Query 007104
Match_columns 618
No_of_seqs 614 out of 3608
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 17:15:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007104.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007104hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ul1_B Importin subunit alpha- 100.0 4.1E-39 1.4E-43 338.8 33.2 402 58-517 58-477 (510)
2 3tpo_A Importin subunit alpha- 100.0 5.7E-39 1.9E-43 339.8 34.3 402 58-517 77-496 (529)
3 4b8j_A Importin subunit alpha- 100.0 9.5E-38 3.3E-42 331.9 35.6 449 13-520 26-498 (528)
4 1wa5_B Importin alpha subunit; 100.0 2.3E-36 7.8E-41 321.1 37.9 405 57-519 87-511 (530)
5 3now_A UNC-45 protein, SD10334 100.0 3.3E-37 1.1E-41 329.7 30.0 441 51-519 240-738 (810)
6 3now_A UNC-45 protein, SD10334 100.0 2.1E-36 7.2E-41 323.5 32.9 415 58-520 291-784 (810)
7 3ul1_B Importin subunit alpha- 100.0 3.9E-36 1.3E-40 316.1 32.2 373 58-477 101-478 (510)
8 1jdh_A Beta-catenin; beta-cate 100.0 1.2E-35 4E-40 316.6 35.4 432 57-517 59-529 (529)
9 3tpo_A Importin subunit alpha- 100.0 1.2E-35 4.2E-40 314.3 33.4 366 58-476 120-496 (529)
10 2z6h_A Catenin beta-1, beta-ca 100.0 2.3E-35 7.9E-40 320.3 36.0 435 57-520 56-529 (644)
11 3l6x_A Catenin delta-1; cateni 100.0 2.4E-35 8.2E-40 305.3 30.0 365 101-521 45-479 (584)
12 3nmz_A APC variant protein; pr 100.0 1.7E-35 5.9E-40 300.2 27.8 365 82-480 48-453 (458)
13 3l6x_A Catenin delta-1; cateni 100.0 3.4E-35 1.2E-39 304.1 29.9 372 58-490 49-489 (584)
14 2z6g_A B-catenin; FULL-length, 100.0 5.6E-35 1.9E-39 321.7 33.0 435 58-521 193-666 (780)
15 2jdq_A Importin alpha-1 subuni 100.0 1.2E-34 4.1E-39 302.2 32.4 402 59-519 22-444 (450)
16 1jdh_A Beta-catenin; beta-cate 100.0 1.2E-34 4.1E-39 308.7 32.3 434 57-519 17-490 (529)
17 1xm9_A Plakophilin 1; armadill 100.0 5E-35 1.7E-39 302.7 28.2 359 105-520 3-451 (457)
18 3nmz_A APC variant protein; pr 100.0 4E-35 1.4E-39 297.5 25.0 367 105-520 33-452 (458)
19 1xm9_A Plakophilin 1; armadill 100.0 4.2E-34 1.4E-38 295.8 28.7 362 59-483 4-455 (457)
20 2z6h_A Catenin beta-1, beta-ca 100.0 2.7E-33 9.2E-38 304.0 35.4 433 58-519 15-487 (644)
21 4b8j_A Importin subunit alpha- 100.0 9.9E-33 3.4E-37 293.3 34.2 377 58-480 118-499 (528)
22 2z6g_A B-catenin; FULL-length, 100.0 1.2E-32 4.3E-37 303.0 34.8 434 57-519 150-623 (780)
23 1wa5_B Importin alpha subunit; 100.0 1.9E-32 6.6E-37 290.9 34.4 364 76-480 144-513 (530)
24 2jdq_A Importin alpha-1 subuni 100.0 6.3E-32 2.1E-36 281.6 32.8 377 57-479 64-445 (450)
25 3nmw_A APC variant protein; AR 100.0 4.4E-31 1.5E-35 260.3 26.8 283 124-407 41-338 (354)
26 3nmw_A APC variant protein; AR 100.0 2.4E-30 8.2E-35 255.1 23.9 281 78-367 47-339 (354)
27 4hxt_A De novo protein OR329; 100.0 2.8E-26 9.7E-31 218.9 25.8 243 104-366 2-245 (252)
28 4hxt_A De novo protein OR329; 99.9 1.9E-25 6.4E-30 213.2 24.8 243 157-407 2-245 (252)
29 4db8_A Armadillo-repeat protei 99.9 2.4E-25 8.3E-30 212.3 23.7 238 104-362 12-251 (252)
30 4db8_A Armadillo-repeat protei 99.9 7.4E-25 2.5E-29 209.0 24.1 239 157-403 12-251 (252)
31 3opb_A SWI5-dependent HO expre 99.9 1.6E-24 5.6E-29 226.9 24.4 387 78-519 271-729 (778)
32 3opb_A SWI5-dependent HO expre 99.9 1.1E-22 3.8E-27 213.1 30.9 381 81-519 230-684 (778)
33 4db6_A Armadillo repeat protei 99.9 1.9E-22 6.6E-27 186.4 22.1 199 205-403 10-209 (210)
34 4db6_A Armadillo repeat protei 99.9 3.5E-22 1.2E-26 184.6 22.8 200 155-362 10-209 (210)
35 1xqr_A HSPBP1 protein; armadil 99.9 1.5E-21 5.2E-26 187.0 25.2 245 56-319 27-286 (296)
36 1xqr_A HSPBP1 protein; armadil 99.9 1E-20 3.5E-25 181.3 22.1 224 131-362 55-287 (296)
37 3tt9_A Plakophilin-2; cell adh 99.8 5.9E-20 2E-24 167.9 18.5 196 250-478 9-230 (233)
38 3tt9_A Plakophilin-2; cell adh 99.8 5.4E-20 1.9E-24 168.1 17.1 195 208-404 9-230 (233)
39 1b3u_A Protein (protein phosph 99.8 9.3E-17 3.2E-21 172.9 26.5 414 61-517 164-586 (588)
40 1b3u_A Protein (protein phosph 99.8 1.5E-16 5.1E-21 171.3 27.0 416 60-520 48-472 (588)
41 4fdd_A Transportin-1; heat rep 99.7 2.1E-17 7.1E-22 185.6 16.5 434 53-521 124-661 (852)
42 3grl_A General vesicular trans 99.7 6E-15 2E-19 150.8 30.7 341 52-418 16-409 (651)
43 2if5_A Zinc finger and BTB dom 99.7 1.1E-17 3.9E-22 138.2 7.5 77 541-617 17-93 (120)
44 4fdd_A Transportin-1; heat rep 99.7 2.1E-16 7.3E-21 177.4 20.0 384 75-521 60-474 (852)
45 3grl_A General vesicular trans 99.7 5.9E-15 2E-19 150.8 28.5 374 105-521 22-452 (651)
46 2vkp_A BTB/POZ domain-containi 99.7 1.3E-17 4.5E-22 135.3 7.2 74 543-617 2-79 (109)
47 1r29_A B-cell lymphoma 6 prote 99.7 4.2E-17 1.5E-21 136.1 8.4 76 541-617 21-97 (127)
48 2ppi_A Gigaxonin; BTB domain, 99.7 4.8E-17 1.7E-21 138.3 7.8 77 541-617 39-117 (144)
49 3b84_A Zinc finger and BTB dom 99.7 6.6E-17 2.3E-21 132.9 6.6 73 541-617 16-88 (119)
50 3ohu_A Transcription regulator 99.7 9.2E-17 3.1E-21 133.6 7.2 75 541-617 24-99 (125)
51 1ibr_B P95, importin beta-1 su 99.7 1.1E-14 3.7E-19 151.7 23.6 391 62-521 3-440 (462)
52 2yy9_A Zinc finger and BTB dom 99.6 1.6E-16 5.6E-21 133.6 6.6 73 541-617 17-89 (135)
53 4eoz_A Speckle-type POZ protei 99.6 9.1E-17 3.1E-21 138.0 4.7 86 531-617 8-93 (145)
54 2ihc_A Transcription regulator 99.6 1.6E-16 5.4E-21 131.8 5.7 75 541-617 21-96 (124)
55 2vpk_A Myoneurin; transcriptio 99.6 3.5E-16 1.2E-20 128.2 7.7 73 541-617 14-88 (116)
56 2z8h_A Transcription regulator 99.6 3.1E-16 1.1E-20 132.7 7.3 75 541-617 28-103 (138)
57 3fkc_A Transcriptional regulat 99.6 3.1E-16 1.1E-20 127.9 6.9 71 541-616 23-94 (116)
58 1buo_A POZ domain, protein (pr 99.6 3.8E-16 1.3E-20 128.9 6.5 72 541-617 20-91 (121)
59 3htm_A Speckle-type POZ protei 99.6 5.2E-16 1.8E-20 137.6 7.2 87 530-617 16-102 (172)
60 3ga1_A Nucleus accumbens-assoc 99.6 5.7E-16 2E-20 129.4 6.9 73 541-617 25-98 (129)
61 1oyz_A Hypothetical protein YI 99.6 1.2E-13 4.1E-18 133.2 24.3 259 100-474 19-279 (280)
62 2q81_A MIZ-1 protein; BTB/POZ 99.6 5.2E-16 1.8E-20 127.6 5.8 72 541-617 19-90 (119)
63 1oyz_A Hypothetical protein YI 99.6 2.7E-13 9.1E-18 130.8 24.5 229 205-518 21-250 (280)
64 1qgr_A Protein (importin beta 99.6 4.7E-14 1.6E-18 159.3 20.0 436 59-521 170-682 (876)
65 2bpt_A Importin beta-1 subunit 99.6 5.1E-13 1.7E-17 150.5 27.8 434 60-521 178-671 (861)
66 2vgl_B AP-2 complex subunit be 99.6 3.2E-13 1.1E-17 144.2 24.5 390 76-520 62-459 (591)
67 2vgl_B AP-2 complex subunit be 99.6 1.5E-13 5E-18 146.9 20.9 397 63-520 88-495 (591)
68 3hve_A Gigaxonin; ubiquitin, c 99.6 2.5E-15 8.6E-20 142.2 6.3 77 541-617 23-101 (256)
69 3m5b_A Zinc finger and BTB dom 99.5 3.3E-15 1.1E-19 122.0 5.0 66 543-617 24-89 (119)
70 2bpt_A Importin beta-1 subunit 99.5 4.4E-13 1.5E-17 151.1 21.8 428 60-518 368-857 (861)
71 3hqi_A Speckle-type POZ protei 99.5 1.9E-14 6.4E-19 140.7 7.5 85 531-616 157-241 (312)
72 3i3n_A Kelch-like protein 11; 99.5 5.4E-15 1.9E-19 141.8 3.0 78 540-617 23-109 (279)
73 1qgr_A Protein (importin beta 99.5 1.4E-12 4.8E-17 147.2 22.4 386 76-521 50-482 (876)
74 3ltm_A Alpha-REP4; protein eng 99.5 1.3E-12 4.4E-17 120.1 17.9 190 248-522 18-207 (211)
75 1w63_A Adapter-related protein 99.5 5.1E-12 1.8E-16 135.4 24.7 273 76-403 120-414 (618)
76 1w63_A Adapter-related protein 99.5 5.5E-11 1.9E-15 127.4 31.4 357 105-520 71-453 (618)
77 1ibr_B P95, importin beta-1 su 99.5 1.1E-12 3.9E-17 136.3 17.6 356 59-479 37-439 (462)
78 3ltm_A Alpha-REP4; protein eng 99.4 7.3E-12 2.5E-16 115.0 20.0 189 206-480 18-206 (211)
79 3ltj_A Alpharep-4; protein eng 99.4 1.7E-11 5.9E-16 111.5 20.6 184 207-476 14-197 (201)
80 3ltj_A Alpharep-4; protein eng 99.4 9.6E-12 3.3E-16 113.3 18.5 185 249-518 14-198 (201)
81 1u6g_C TIP120 protein, CAND1; 99.4 1.7E-11 5.9E-16 143.1 22.7 412 76-519 19-507 (1230)
82 4gmo_A Putative uncharacterize 99.4 3.3E-10 1.1E-14 122.6 29.7 197 61-276 38-256 (684)
83 1u6g_C TIP120 protein, CAND1; 99.3 5.5E-11 1.9E-15 138.8 23.1 403 60-521 132-601 (1230)
84 2vgl_A Adaptor protein complex 99.2 1.5E-08 5.2E-13 108.0 31.9 363 104-520 74-472 (621)
85 2vgl_A Adaptor protein complex 99.2 1.2E-08 4.1E-13 108.8 29.0 393 76-522 87-513 (621)
86 4gmo_A Putative uncharacterize 99.0 6.4E-09 2.2E-13 112.5 15.1 193 106-319 36-257 (684)
87 4ady_A RPN2, 26S proteasome re 98.8 6E-06 2E-10 89.3 30.6 305 130-518 409-719 (963)
88 2qk2_A LP04448P; mini spindles 98.8 2.1E-08 7E-13 93.9 9.9 188 294-521 18-208 (242)
89 2db0_A 253AA long hypothetical 98.8 4E-06 1.4E-10 70.3 21.6 215 103-362 31-246 (253)
90 3b2a_A TON_1937, putative unch 98.7 8.4E-07 2.9E-11 77.8 17.4 221 249-512 33-255 (265)
91 4ajy_C Transcription elongatio 98.7 2.4E-08 8.3E-13 77.5 6.6 57 552-609 4-63 (97)
92 1ho8_A Vacuolar ATP synthase s 98.7 4.3E-06 1.5E-10 82.8 24.0 345 156-519 76-477 (480)
93 2qk2_A LP04448P; mini spindles 98.7 1.4E-07 4.7E-12 88.2 13.1 186 210-404 18-206 (242)
94 2db0_A 253AA long hypothetical 98.7 7.3E-06 2.5E-10 68.7 21.3 213 207-476 32-245 (253)
95 3b2a_A TON_1937, putative unch 98.7 4E-06 1.4E-10 73.6 19.7 188 157-364 33-220 (265)
96 4ady_A RPN2, 26S proteasome re 98.7 3.7E-05 1.3E-09 83.2 31.5 306 75-479 407-721 (963)
97 2qk1_A Protein STU2; STU2P, XM 98.6 5.7E-08 2E-12 90.7 8.5 195 295-521 20-223 (249)
98 3tjz_B Coatomer subunit gamma; 98.6 1.2E-06 4.1E-11 84.9 17.9 278 159-515 70-350 (355)
99 3tjz_B Coatomer subunit gamma; 98.6 2.8E-06 9.6E-11 82.4 19.3 246 209-521 70-319 (355)
100 2ast_A S-phase kinase-associat 98.5 1.7E-07 5.8E-12 80.3 6.7 60 552-612 3-65 (159)
101 1te4_A Conserved protein MTH18 98.5 2.6E-08 9E-13 83.1 1.1 121 332-516 11-131 (131)
102 1wa5_C Importin alpha RE-expor 98.4 4.7E-05 1.6E-09 86.2 26.7 377 132-520 205-672 (960)
103 2qk1_A Protein STU2; STU2P, XM 98.4 1.4E-06 4.8E-11 81.2 11.8 191 211-403 20-220 (249)
104 1te4_A Conserved protein MTH18 98.4 2.8E-08 9.7E-13 82.9 -0.7 121 206-360 11-131 (131)
105 1ho8_A Vacuolar ATP synthase s 98.3 0.00015 5.2E-09 71.9 23.0 317 58-402 78-475 (480)
106 1wa5_C Importin alpha RE-expor 98.2 0.00033 1.1E-08 79.3 27.3 382 77-519 99-583 (960)
107 3dad_A FH1/FH2 domain-containi 98.0 0.00017 5.9E-09 67.8 15.5 143 131-281 133-289 (339)
108 2iw3_A Elongation factor 3A; a 98.0 0.0024 8.3E-08 70.1 26.0 263 61-361 54-323 (986)
109 3dad_A FH1/FH2 domain-containi 97.9 0.00044 1.5E-08 65.1 17.0 184 160-351 121-325 (339)
110 2iw3_A Elongation factor 3A; a 97.8 0.00015 5E-09 79.6 14.2 295 212-521 19-327 (986)
111 1hv2_A Elongin C, ELC1; protei 97.8 4.9E-05 1.7E-09 58.7 7.3 58 552-611 6-64 (99)
112 2x1g_F Cadmus; transport prote 97.7 0.00096 3.3E-08 75.7 19.2 292 180-519 259-616 (971)
113 2x19_B Importin-13; nuclear tr 97.7 0.0012 4.1E-08 74.9 19.3 331 131-519 217-600 (963)
114 2fnj_C Transcription elongatio 97.7 6.1E-05 2.1E-09 57.8 5.8 58 552-610 3-63 (96)
115 3ibv_A Exportin-T; karyopherin 97.7 0.003 1E-07 70.9 21.5 318 59-404 191-567 (980)
116 3m1i_C Exportin-1; heat repeat 97.6 0.0092 3.1E-07 68.1 24.2 338 131-519 210-619 (1049)
117 2x1g_F Cadmus; transport prote 97.5 0.0036 1.2E-07 70.9 19.9 394 78-521 22-538 (971)
118 4hat_C Exportin-1; heat repeat 97.5 0.0092 3.1E-07 67.1 22.5 318 56-403 189-569 (1023)
119 3oc3_A Helicase MOT1, MOT1; re 97.5 0.00098 3.4E-08 66.5 12.5 243 208-514 175-432 (800)
120 2x19_B Importin-13; nuclear tr 97.5 0.041 1.4E-06 62.2 27.9 335 130-520 463-848 (963)
121 3ibv_A Exportin-T; karyopherin 97.4 0.072 2.5E-06 59.8 28.9 258 76-361 56-360 (980)
122 1lrv_A LRV, leucine-rich repea 97.4 6.1E-05 2.1E-09 69.1 3.4 165 210-513 77-241 (244)
123 1fs1_B SKP1, cyclin A/CDK2-ass 97.4 0.00012 4E-09 61.0 4.7 56 552-612 4-60 (141)
124 3m1i_C Exportin-1; heat repeat 97.3 0.031 1.1E-06 63.8 23.7 316 59-404 192-570 (1049)
125 4hat_C Exportin-1; heat repeat 97.3 0.065 2.2E-06 60.3 25.6 336 131-520 210-620 (1023)
126 4ffb_C Protein STU2; tubulin f 97.2 0.0076 2.6E-07 57.0 15.2 189 209-404 12-213 (278)
127 1lrv_A LRV, leucine-rich repea 97.2 0.00025 8.5E-09 65.0 4.6 116 211-398 126-241 (244)
128 1upk_A MO25 protein; transfera 97.2 0.031 1E-06 52.6 18.4 206 203-411 74-291 (341)
129 4ffb_C Protein STU2; tubulin f 97.2 0.0037 1.3E-07 59.1 12.7 188 296-521 14-215 (278)
130 2of3_A ZYG-9; multifunctional 97.1 0.0077 2.6E-07 55.5 12.9 178 210-403 49-236 (266)
131 2p1m_A SKP1-like protein 1A; F 97.1 0.00012 4E-09 62.5 0.7 57 552-612 6-63 (160)
132 2fv2_A RCD1 required for cell 97.0 0.0075 2.6E-07 54.1 12.2 177 80-276 73-266 (268)
133 2of3_A ZYG-9; multifunctional 96.9 0.023 7.8E-07 52.3 14.3 178 295-520 50-238 (266)
134 3drz_A BTB/POZ domain-containi 96.9 0.0026 8.8E-08 49.9 6.9 66 551-617 7-77 (107)
135 3oc3_A Helicase MOT1, MOT1; re 96.8 0.0078 2.7E-07 60.2 11.2 237 130-399 188-432 (800)
136 1upk_A MO25 protein; transfera 96.8 0.096 3.3E-06 49.3 17.6 204 151-365 72-286 (341)
137 1vcb_B Protein (elongin C); tu 96.7 0.002 7E-08 50.7 5.3 59 551-610 18-79 (112)
138 2fv2_A RCD1 required for cell 96.2 0.46 1.6E-05 42.7 17.4 173 181-360 72-266 (268)
139 3l9t_A Putative uncharacterize 96.1 0.051 1.7E-06 48.4 11.1 142 251-412 73-217 (240)
140 3gjx_A Exportin-1; transport, 96.0 2.6 9E-05 47.3 27.2 177 76-279 74-276 (1073)
141 3gjx_A Exportin-1; transport, 95.9 2.7 9.1E-05 47.3 26.5 319 59-403 204-595 (1073)
142 3a6p_A Exportin-5; exportin-5, 95.8 2.4 8.1E-05 48.9 26.6 260 75-364 59-382 (1204)
143 3l9t_A Putative uncharacterize 95.8 0.081 2.8E-06 47.2 11.0 136 334-521 72-210 (240)
144 3ebb_A Phospholipase A2-activa 95.7 1.4 4.7E-05 41.6 19.8 178 105-302 104-287 (304)
145 3c2g_A SYS-1 protein; beta-cat 95.2 0.5 1.7E-05 44.3 14.1 136 180-318 258-401 (619)
146 3v7d_A Suppressor of kinetocho 95.1 0.034 1.2E-06 47.5 6.1 60 551-611 8-72 (169)
147 3ebb_A Phospholipase A2-activa 94.4 0.57 2E-05 44.2 13.1 140 212-352 152-296 (304)
148 3u0r_A Apoptosis inhibitor 5; 94.4 4.5 0.00015 40.1 26.0 162 76-276 41-204 (507)
149 3a6p_A Exportin-5; exportin-5, 94.1 2.6 8.8E-05 48.6 20.2 135 131-279 222-381 (1204)
150 2f31_A Diaphanous protein homo 93.9 3.6 0.00012 37.1 18.1 162 145-307 32-215 (233)
151 3c2g_A SYS-1 protein; beta-cat 93.7 0.75 2.6E-05 43.1 11.8 135 81-235 261-402 (619)
152 3eg5_B Protein diaphanous homo 93.4 2.1 7.2E-05 41.9 15.4 162 145-307 98-281 (383)
153 1lsh_A Lipovitellin (LV-1N, LV 92.3 6.8 0.00023 44.3 19.7 174 159-366 393-580 (1056)
154 3drx_A BTB/POZ domain-containi 92.3 0.11 3.6E-06 45.2 3.9 67 550-617 12-83 (202)
155 2bnx_A Diaphanous protein homo 92.1 4.8 0.00017 39.4 16.2 162 146-308 37-220 (386)
156 3kvt_A Potassium channel prote 91.9 0.086 2.9E-06 41.6 2.7 66 551-617 6-73 (115)
157 3eg5_B Protein diaphanous homo 91.7 1.5 5E-05 43.1 11.9 137 346-505 133-281 (383)
158 1lsh_A Lipovitellin (LV-1N, LV 91.6 5.8 0.0002 44.8 18.2 101 293-404 393-508 (1056)
159 2f31_A Diaphanous protein homo 91.6 1.5 5.1E-05 39.7 11.0 138 346-506 67-216 (233)
160 3u0r_A Apoptosis inhibitor 5; 91.5 4 0.00014 40.5 14.3 118 180-317 43-160 (507)
161 1s1g_A Potassium voltage-gated 88.1 0.76 2.6E-05 36.6 5.3 64 550-617 13-80 (124)
162 2nz0_B Potassium voltage-gated 87.2 0.8 2.7E-05 37.4 5.0 64 550-617 35-102 (140)
163 1t1d_A Protein (potassium chan 87.0 0.39 1.3E-05 36.7 2.8 65 552-617 3-70 (100)
164 2bnx_A Diaphanous protein homo 86.5 6.5 0.00022 38.5 12.1 138 346-506 71-220 (386)
165 1nn7_A Potassium channel KV4.2 86.2 0.37 1.3E-05 37.2 2.4 62 552-617 2-67 (105)
166 3qml_C Protein SLS1, nucleotid 86.1 22 0.00074 33.0 14.7 161 58-235 23-188 (315)
167 3qml_C Protein SLS1, nucleotid 82.8 15 0.00051 34.1 11.7 134 264-403 43-189 (315)
168 3gs3_A Symplekin, LD45768P; he 78.9 38 0.0013 30.8 19.7 148 55-235 10-172 (257)
169 3o2t_A Symplekin; heat repeat, 72.2 44 0.0015 32.4 12.2 129 223-361 41-182 (386)
170 1x5b_A Signal transducing adap 71.2 28 0.00095 29.1 9.4 71 208-278 53-125 (163)
171 3ldz_A STAM-1, signal transduc 67.0 7.7 0.00026 31.6 5.0 74 448-521 42-117 (140)
172 1mhq_A ADP-ribosylation factor 65.0 26 0.00088 28.7 7.8 72 208-279 39-117 (148)
173 3zyq_A Hepatocyte growth facto 63.8 40 0.0014 29.9 9.5 99 171-278 18-118 (226)
174 1juq_A ADP-ribosylation factor 62.8 27 0.00092 29.4 7.7 72 208-279 51-129 (171)
175 1vsy_5 Proteasome activator BL 62.7 58 0.002 36.3 12.4 218 292-519 134-366 (997)
176 3s4w_B Protein FACD2, fanconi 62.2 2.2E+02 0.0075 32.6 19.6 69 332-403 395-467 (1323)
177 3o2t_A Symplekin; heat repeat, 59.9 1.3E+02 0.0044 29.1 14.8 86 181-276 41-127 (386)
178 1x5b_A Signal transducing adap 56.0 18 0.00061 30.3 5.4 73 448-520 52-127 (163)
179 3ldz_A STAM-1, signal transduc 54.6 17 0.00058 29.5 4.9 71 208-278 43-114 (140)
180 3g2s_A C-terminal fragment of 50.6 1E+02 0.0035 25.2 10.3 72 208-279 49-127 (149)
181 3gae_A Protein DOA1; UFD3, CDC 49.3 28 0.00096 31.6 6.0 62 342-403 99-169 (253)
182 1mhq_A ADP-ribosylation factor 46.0 39 0.0013 27.6 5.8 72 292-363 39-117 (148)
183 3g2s_A C-terminal fragment of 45.9 38 0.0013 27.7 5.7 71 334-404 49-127 (149)
184 1elk_A Target of MYB1; superhe 44.4 1.3E+02 0.0045 24.7 9.7 104 166-278 21-130 (157)
185 1dvp_A HRS, hepatocyte growth 43.4 1.1E+02 0.0038 26.8 8.9 70 208-277 43-114 (220)
186 1vsy_5 Proteasome activator BL 42.7 3E+02 0.01 30.6 14.0 102 250-361 134-244 (997)
187 1juq_A ADP-ribosylation factor 39.5 43 0.0015 28.2 5.2 70 250-319 51-127 (171)
188 3pst_A Protein DOA1; protein d 39.1 1.6E+02 0.0056 28.8 9.8 131 184-325 245-394 (425)
189 2r9r_B Paddle chimera voltage 34.4 27 0.00094 35.6 3.8 66 551-617 53-121 (514)
190 3gae_A Protein DOA1; UFD3, CDC 31.5 35 0.0012 30.9 3.7 106 130-238 104-219 (253)
191 3l3f_X Protein DOA1, DOA1/UFD3 29.8 66 0.0022 30.8 5.3 100 180-282 214-330 (362)
192 3s4w_B Protein FACD2, fanconi 28.9 7.1E+02 0.024 28.6 19.2 71 333-403 344-429 (1323)
193 2npp_B PP2A, B subunit, serine 26.8 4.7E+02 0.016 25.8 12.7 244 93-364 151-401 (449)
194 3zyq_A Hepatocyte growth facto 25.6 78 0.0027 28.0 4.8 70 106-194 47-118 (226)
195 3pst_A Protein DOA1; protein d 25.2 74 0.0025 31.2 4.8 104 130-236 276-389 (425)
196 2xpp_A IWS1, ECU08_0440; trans 25.2 2.7E+02 0.0093 22.5 9.7 78 196-277 50-135 (145)
197 3fga_B Serine/threonine-protei 24.4 4.9E+02 0.017 25.2 15.8 272 168-480 87-369 (403)
198 2b6c_A Hypothetical protein EF 23.6 3.6E+02 0.012 23.4 13.0 127 131-288 70-198 (220)
199 2xpp_A IWS1, ECU08_0440; trans 23.2 3E+02 0.01 22.2 9.2 76 238-317 50-133 (145)
200 4atg_A TAF6; transcription, TF 22.8 57 0.002 28.1 3.2 117 58-194 41-162 (196)
201 4atg_A TAF6; transcription, TF 22.4 3.7E+02 0.013 23.0 8.6 71 334-404 41-120 (196)
202 3l3f_X Protein DOA1, DOA1/UFD3 21.8 69 0.0023 30.7 3.8 104 130-236 213-326 (362)
203 3gs3_A Symplekin, LD45768P; he 20.5 4.7E+02 0.016 23.5 20.9 92 180-277 68-172 (257)
No 1
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=4.1e-39 Score=338.76 Aligned_cols=402 Identities=18% Similarity=0.277 Sum_probs=348.7
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHhcc--ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHH
Q 007104 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (618)
Q Consensus 58 ~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (618)
.++.+|+.+.+. |.+.|..|+..++.+.+ .....+.+++.|+||.|+++|+..+. +++|..
T Consensus 58 ~i~~~v~~l~s~------d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~-----------~~lq~~ 120 (510)
T 3ul1_B 58 SVEDIVKGINSN------NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC-----------SPIQFE 120 (510)
T ss_dssp CHHHHHHHHTSS------CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTC-----------HHHHHH
T ss_pred hHHHHHHHhcCC------CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCC-----------HHHHHH
Confidence 478888888876 77889999999998765 23346789999999999999987654 389999
Q ss_pred HHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHH
Q 007104 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (618)
Q Consensus 136 a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ 214 (618)
|+|+|+||+ .+++.+..+++.|++|.|+.+|++.+. ++++.|+++|+||+.+++..+..+...|+++.|+.
T Consensus 121 Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~--------~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~ 192 (510)
T 3ul1_B 121 SAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA--------HISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLA 192 (510)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHH
Confidence 999999998 899999999999999999999998765 99999999999999988999999999999999999
Q ss_pred hhcCCC-----HHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHh
Q 007104 215 LLEFTD-----TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (618)
Q Consensus 215 ll~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 289 (618)
++.+++ ..+.+.++++|.+++.............++++.|+.++.+++++++..++|+|++|+..+.+....+..
T Consensus 193 lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~ 272 (510)
T 3ul1_B 193 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK 272 (510)
T ss_dssp HTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHT
T ss_pred HHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHh
Confidence 998754 457889999999999855454444555688999999999999999999999999999988888788889
Q ss_pred cCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCc-ch
Q 007104 290 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN-QA 368 (618)
Q Consensus 290 ~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~ 368 (618)
.|+++.|+.++.+.+..++..++++|+|++..++.....+.+.|+++.|+.+|.+++..++..++|+|+||+.+... ..
T Consensus 273 ~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~ 352 (510)
T 3ul1_B 273 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ 352 (510)
T ss_dssp TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHH
Confidence 99999999999999999999999999999988888889999999999999999999999999999999999986655 45
Q ss_pred hhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcC--CcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHh
Q 007104 369 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 446 (618)
Q Consensus 369 ~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (618)
.+.+.++++.|+.++.+.+..++..|+++|.|++.+ .+....+++.
T Consensus 353 ~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~-------------------------------- 400 (510)
T 3ul1_B 353 QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHC-------------------------------- 400 (510)
T ss_dssp HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHT--------------------------------
T ss_pred HHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHC--------------------------------
Confidence 577889999999999999999999999999999853 3344444444
Q ss_pred hhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCC-------ccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhh
Q 007104 447 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-------DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 517 (618)
Q Consensus 447 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-------~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 517 (618)
++++.|+.+|+++++.++..++.+|.++.... ..+..+.+.||+..|..+..+++.++...|...|-..-
T Consensus 401 -g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 401 -GIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477 (510)
T ss_dssp -TCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred -CCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 56777999999999999999999999986311 12345668899999999999999999999988886554
No 2
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=5.7e-39 Score=339.80 Aligned_cols=402 Identities=18% Similarity=0.280 Sum_probs=348.2
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHhcc--ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHH
Q 007104 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (618)
Q Consensus 58 ~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (618)
.++.+++.+.+. |.+.|..|+..+..+.+ .....+.+++.|+||.|+++|...+. +.++..
T Consensus 77 ~l~~lv~~l~s~------d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~-----------~~~q~~ 139 (529)
T 3tpo_A 77 SVEDIVKGINSN------NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC-----------SPIQFE 139 (529)
T ss_dssp CHHHHHHHHTSS------CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTC-----------HHHHHH
T ss_pred HHHHHHHHhcCC------CHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCC-----------HHHHHH
Confidence 467777777665 67789999999998765 34456789999999999999987654 389999
Q ss_pred HHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHH
Q 007104 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (618)
Q Consensus 136 a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ 214 (618)
|+|+|++++ .+++.+..+++.|++|.|+.+|.+.+. ++++.|+++|+||+.+++..+..+...|+++.|+.
T Consensus 140 Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~--------~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~ 211 (529)
T 3tpo_A 140 SAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA--------HISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLA 211 (529)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHH
Confidence 999999999 788889999999999999999998876 99999999999999989999999999999999999
Q ss_pred hhcCCC-----HHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHh
Q 007104 215 LLEFTD-----TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (618)
Q Consensus 215 ll~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 289 (618)
++..++ ..+.+.++++|.+++.+...........++++.|+.++.+++++++..++|+|.+++....+....+..
T Consensus 212 lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~ 291 (529)
T 3tpo_A 212 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK 291 (529)
T ss_dssp TTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHT
T ss_pred HHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHh
Confidence 998654 457889999999999855555445555678999999999999999999999999999988888888889
Q ss_pred cCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcc-h
Q 007104 290 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ-A 368 (618)
Q Consensus 290 ~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-~ 368 (618)
.|+++.|+.++.+.+..++..++.+|+|++.+++.....+.+.|+++.|+.+|.++++.++..|+|+|+||+.+...+ .
T Consensus 292 ~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~ 371 (529)
T 3tpo_A 292 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ 371 (529)
T ss_dssp TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred ccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHH
Confidence 999999999999999999999999999999888888889999999999999999999999999999999999876554 5
Q ss_pred hhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcC--CcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHh
Q 007104 369 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 446 (618)
Q Consensus 369 ~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (618)
.+.+.|+++.|+.++.+.+..++..|+++|.|++.+ .+....+++.
T Consensus 372 ~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~-------------------------------- 419 (529)
T 3tpo_A 372 QVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHC-------------------------------- 419 (529)
T ss_dssp HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT--------------------------------
T ss_pred HHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHC--------------------------------
Confidence 577889999999999999999999999999999853 3344445444
Q ss_pred hhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCC-----C--ccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhh
Q 007104 447 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSP-----D--DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 517 (618)
Q Consensus 447 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-----~--~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 517 (618)
++++.|+.+|.++++.++..++.+|.++... . ..+..+.+.||+..|..+..+++.++...|...|-..-
T Consensus 420 -g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 420 -GIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 496 (529)
T ss_dssp -TCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC
T ss_pred -cCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 4667799999999999999999999998521 1 12345668899999999999999999999988886543
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=9.5e-38 Score=331.92 Aligned_cols=449 Identities=18% Similarity=0.239 Sum_probs=356.1
Q ss_pred cccccccccchhhccchhhhhhhhhhhccccCCCC-C---chhhhhhHHHHHHHHHHhhccccchHHhHHHHHHHHHHHH
Q 007104 13 ERKGQKRKLDEETVIGDEQQQMQQREISSSSAGTS-S---SDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLA 88 (618)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~ 88 (618)
+.|.+|+...-+.+....++.+..|+-.....+.. . ..........++.+++.|.+. +..++..|++.|.
T Consensus 26 ~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~s~------~~~~~~~A~~~L~ 99 (528)
T 4b8j_A 26 EGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAATGVDKKLESLPAMIGGVYSD------DNNLQLEATTQFR 99 (528)
T ss_dssp -CCCCC-----------------CCCC----------------------CHHHHHHHHTSS------CHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhccCCCcccccccccccchhhhHHHHHHHHHHHcCC------CHHHHHHHHHHHH
Confidence 34445555555556666666665554321111110 0 011112234577788777654 5678999999999
Q ss_pred Hhcc-C-hhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHH
Q 007104 89 ELAK-N-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNL 165 (618)
Q Consensus 89 ~l~~-~-~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~l 165 (618)
+++. + ......++..|++|.|+.+|.+++. +.++..|+++|++++ .+++.+..++..|+++.|+.+
T Consensus 100 ~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~-----------~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 168 (528)
T 4b8j_A 100 KLLSIERSPPIEEVIQSGVVPRFVQFLTREDF-----------PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL 168 (528)
T ss_dssp HHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTC-----------HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH
T ss_pred HHhcCCCCchHHHHHHCCCHHHHHHHhCCCCC-----------HHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHH
Confidence 9976 3 3678889999999999999988763 299999999999999 679999999999999999999
Q ss_pred HhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCcccHHH
Q 007104 166 LKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQ 244 (618)
Q Consensus 166 L~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 244 (618)
|.+.+. +++..|+++|++++..++..+..+...|+++.|+.++ .+.++.++..++++|.+++...+.. ..
T Consensus 169 L~~~~~--------~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~ 239 (528)
T 4b8j_A 169 LGSSSD--------DVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SF 239 (528)
T ss_dssp TTCSCH--------HHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CH
T ss_pred hcCCCH--------HHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cH
Confidence 998654 9999999999999998888888899999999999999 6678999999999999999854333 34
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChh
Q 007104 245 IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 324 (618)
Q Consensus 245 ~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 324 (618)
....++++.|+.++.++++.++..++++|++++...+...+.++..|+++.|+.+|.+.++.++..|+++|+|++..++.
T Consensus 240 ~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~ 319 (528)
T 4b8j_A 240 EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDA 319 (528)
T ss_dssp HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHH
Confidence 44578999999999999999999999999999988877778888999999999999999999999999999999988888
Q ss_pred hHHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCCc-chhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 007104 325 CKVHIVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 402 (618)
Q Consensus 325 ~~~~l~~~~~~~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~-~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 402 (618)
....+.+.|+++.|+.+|.++ ++.++..|+++|+||+.+... ...+...++++.|+.++.+.+..++..|+++|.|++
T Consensus 320 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~ 399 (528)
T 4b8j_A 320 QTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNAT 399 (528)
T ss_dssp HHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 888889999999999999998 999999999999999985443 356778899999999999999999999999999998
Q ss_pred cC--CcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCc
Q 007104 403 DN--EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 480 (618)
Q Consensus 403 ~~--~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 480 (618)
.. ++....+++ .++++.|+.+|.++++.++..++.+|.+++...+
T Consensus 400 ~~~~~~~~~~l~~---------------------------------~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 446 (528)
T 4b8j_A 400 SGGSHDQIKYLVS---------------------------------EGCIKPLCDLLICPDIRIVTVCLEGLENILKVGE 446 (528)
T ss_dssp HHSCHHHHHHHHH---------------------------------TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHH---------------------------------CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 65 344444433 3567789999999999999999999999974332
Q ss_pred ------------cccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhhh
Q 007104 481 ------------QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (618)
Q Consensus 481 ------------~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (618)
....+.+.|+++.|..+..+.+++++..|..+|.++....
T Consensus 447 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e 498 (528)
T 4b8j_A 447 TDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDE 498 (528)
T ss_dssp HHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred HhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 3556678899999999999999999999999999887653
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=2.3e-36 Score=321.13 Aligned_cols=405 Identities=18% Similarity=0.250 Sum_probs=350.9
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHhccC--hhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHH
Q 007104 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (618)
Q Consensus 57 ~~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~ 134 (618)
..++.+++.|.+. +..++..|++.|.++... ......+++.|++|.|+.+|.+++. +.++.
T Consensus 87 ~~i~~lv~~L~s~------~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~-----------~~v~~ 149 (530)
T 1wa5_B 87 QELPQMTQQLNSD------DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQP-----------EMLQL 149 (530)
T ss_dssp CCHHHHHHHHSCS------SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSC-----------HHHHH
T ss_pred HHHHHHHHHHcCC------CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCC-----------HHHHH
Confidence 3466777777654 567899999999999763 4556778899999999999988632 28999
Q ss_pred HHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHH
Q 007104 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (618)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~ 213 (618)
.|+++|++++ .+++.+..++..|+++.|+.+|++.+. +++..|+++|.+++..++..+..+...|+++.|+
T Consensus 150 ~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~--------~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~ 221 (530)
T 1wa5_B 150 EAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV--------EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPIL 221 (530)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHH
Confidence 9999999999 678899999999999999999997654 9999999999999998888888888899999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCH
Q 007104 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (618)
Q Consensus 214 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l 293 (618)
.++.+.++.++..++++|.+++.+...........++++.|+.++.++++.++..++++|.+++...+.....++..|++
T Consensus 222 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v 301 (530)
T 1wa5_B 222 GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIP 301 (530)
T ss_dssp HGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCH
T ss_pred HHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcH
Confidence 99999999999999999999997543444455667899999999999999999999999999998888777888889999
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCc-chhhHh
Q 007104 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN-QAGIAH 372 (618)
Q Consensus 294 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~l~~ 372 (618)
+.|+.++.+.++.++..++++|++++..++.....+.+.|+++.|+.+|.++++.++..|+++|++++.+... ...+.+
T Consensus 302 ~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~ 381 (530)
T 1wa5_B 302 KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVID 381 (530)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999988888888888899999999999999999999999999999985433 345677
Q ss_pred cCCHHHHHHhhcCCChhHHHHHHHHHHHhhcC--C--cchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhh
Q 007104 373 NGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--E--DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR 448 (618)
Q Consensus 373 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~--~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (618)
.++++.|+.++.++++.++..|+++|.+++.. + +....+. ..+
T Consensus 382 ~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~---------------------------------~~~ 428 (530)
T 1wa5_B 382 ANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLV---------------------------------SQG 428 (530)
T ss_dssp TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHH---------------------------------HTT
T ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHH---------------------------------HCC
Confidence 89999999999999999999999999999854 2 3333333 345
Q ss_pred hHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCc------------cccceecCCchHHHHHHhcCCChhhhhhHHHHHHHh
Q 007104 449 VLNHLLYLMRVAEKGVQRRVALALAHLCSPDD------------QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL 516 (618)
Q Consensus 449 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~------------~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L 516 (618)
+++.|+.++.++++.++..++++|.+++...+ ....+.+.|+++.|..+..++++.++..|..+|.++
T Consensus 429 ~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~ 508 (530)
T 1wa5_B 429 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETY 508 (530)
T ss_dssp CHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 77889999999999999999999999975322 234567889999999999999999999999999988
Q ss_pred hhh
Q 007104 517 ANK 519 (618)
Q Consensus 517 ~~~ 519 (618)
...
T Consensus 509 ~~~ 511 (530)
T 1wa5_B 509 FGE 511 (530)
T ss_dssp SSS
T ss_pred CCc
Confidence 765
No 5
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=3.3e-37 Score=329.66 Aligned_cols=441 Identities=19% Similarity=0.215 Sum_probs=349.2
Q ss_pred hhhhhHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHhcc-ChhhHHHHH-hCCCHHHHHHhhcCCCCCccccCCCcc
Q 007104 51 ARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIV-EGGAVPALVKHLQAPPTSEADRNLKPF 128 (618)
Q Consensus 51 ~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~-~~g~v~~Lv~lL~~~~~~~~~~~~~~~ 128 (618)
..+.+...+..++...... .+.+-...|++++.++.. .++....++ ..|+++.|+.++.+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~---------- 304 (810)
T 3now_A 240 AKARFTDQIDEYIKDKLLA-----PDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDE---------- 304 (810)
T ss_dssp HHHHHHHHHHHHHHHHHSS-----CCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCH----------
T ss_pred hHHHHHHHHHHHHHHHhcc-----CChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCH----------
Confidence 3344444444444433221 233346799999999998 566666566 78999999999998876
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCc-hhhHHHHhcC
Q 007104 129 EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-SIKTRVRMEG 207 (618)
Q Consensus 129 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~ 207 (618)
.+++.|++++++++.++++|+.+.+.|+ +.|..++++.+. .++..|+.+|+++..... +........|
T Consensus 305 --~~q~~A~~al~~aa~~~~~R~~I~~~gv-~~L~~Ll~s~~~--------~vr~~Al~~L~kl~s~~~~d~~~~~~~~g 373 (810)
T 3now_A 305 --LQQRVACECLIAASSKKDKAKALCEQGV-DILKRLYHSKND--------GIRVRALVGLCKLGSYGGQDAAIRPFGDG 373 (810)
T ss_dssp --HHHHHHHHHHHHHTTSHHHHHTTHHHHH-HHHHHHTTCSCH--------HHHHHHHHHHHHHHTTTTTTTSCCSSTTT
T ss_pred --HHHHHHHHHHHHHcCCcHHHHHHHHcCc-HHHHHHHcCCCH--------HHHHHHHHHHHHhccccccCccccchhhc
Confidence 8999999999999988999999999885 999999986554 788999999999975221 1111122233
Q ss_pred C----hHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCcccHHHHH-hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 007104 208 G----IPPLVELLEFT--DTKVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS 280 (618)
Q Consensus 208 ~----i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 280 (618)
. ++.++.+|.++ +++++..|+++|.+|+. .+..+..++ +.|+++.|+.+++++++.+++.|+++|.|++.+.
T Consensus 374 ~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~-~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~ 452 (810)
T 3now_A 374 AALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTL-DAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAY 452 (810)
T ss_dssp HHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTT-SHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCS
T ss_pred cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCc
Confidence 3 56788888887 88999999999999997 566666666 5799999999999999999999999999998754
Q ss_pred h-----------------------------hH---HHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHH
Q 007104 281 P-----------------------------NI---KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328 (618)
Q Consensus 281 ~-----------------------------~~---~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 328 (618)
+ .. .+.+++.|+++.|+.++.++++.+++.|+|+|+|++ .+++++..
T Consensus 453 d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA-~d~~~r~~ 531 (810)
T 3now_A 453 EKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVC-GLKELRGK 531 (810)
T ss_dssp CCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHH-TSHHHHHH
T ss_pred hhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 2 12 267889999999999999999999999999999998 56779999
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhh---HhcCCHHHHHHhhcCCCh-hHHHHHHHHHHHhhcC
Q 007104 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI---AHNGGLVPLLKLLDSKNG-SLQHNAAFALYGLADN 404 (618)
Q Consensus 329 l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l---~~~~~l~~L~~ll~~~~~-~v~~~a~~~L~~l~~~ 404 (618)
+++.|+++.|+.+|.++++..++.|+++|.||+.+..+...+ ...+++++|+.+|.+... ..+..|+++|.||+..
T Consensus 532 Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~ 611 (810)
T 3now_A 532 VVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM 611 (810)
T ss_dssp HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS
T ss_pred HHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999754433222 124689999999986533 4457899999999977
Q ss_pred -CcchhHHHhhcccccccccchhh-----hhHHHHHHHHH---HHHHHHHh-hhhHHHHHHHHhhCCHhHHHHHHHHHHh
Q 007104 405 -EDNVADFIRVGGVQKLQDGEFIV-----QATKDCVAKTL---KRLEEKIH-GRVLNHLLYLMRVAEKGVQRRVALALAH 474 (618)
Q Consensus 405 -~~~~~~l~~~~~~~~L~~~~~~~-----~~~~~~~~~~~---~~~~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 474 (618)
++++..+++.|+++.|....... .....++.+.. ........ .+.++.|+.++.+++..+|..|+++|.+
T Consensus 612 ~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALan 691 (810)
T 3now_A 612 NESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAI 691 (810)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 57788899999999987743321 12233333321 11112223 6899999999999999999999999999
Q ss_pred hcC-CCccccceec-CCchHHHHHHhcCCChhhhhhHHHHHHHhhhh
Q 007104 475 LCS-PDDQRTIFID-GGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (618)
Q Consensus 475 l~~-~~~~~~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (618)
++. ++.....+.+ .|+++.|++++.+++.++|..|+|+|.|++.+
T Consensus 692 Lt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 692 ITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp HHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred HhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 987 5556666667 89999999999999999999999999999985
No 6
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=2.1e-36 Score=323.51 Aligned_cols=415 Identities=16% Similarity=0.190 Sum_probs=344.9
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCC---------------ccc
Q 007104 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTS---------------EAD 122 (618)
Q Consensus 58 ~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~---------------~~~ 122 (618)
.++.+++++.+. +..+|..|++++.+++.+++.+..+++.|+ |.|+.++++.+.. ...
T Consensus 291 ~v~~li~Ll~s~------~~~~q~~A~~al~~aa~~~~~R~~I~~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~ 363 (810)
T 3now_A 291 ILQMILAMATTD------DELQQRVACECLIAASSKKDKAKALCEQGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQ 363 (810)
T ss_dssp HHHHHHHHHHSS------CHHHHHHHHHHHHHHTTSHHHHHTTHHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTT
T ss_pred hHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCcHHHHHHHHcCc-HHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 456666666655 666889999999999999999999998875 9999998755420 000
Q ss_pred cCC-Cc---------------------chhHHHHHHHHHHHHhcCChhhHHHHH-hCCcHHHHHHHHhhccCCCCcccch
Q 007104 123 RNL-KP---------------------FEHEVEKGSAFALGLLAVKPEHQQLIV-DNGALSHLVNLLKRHMDSNCSRAVN 179 (618)
Q Consensus 123 ~~~-~~---------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~g~l~~L~~lL~~~~~~~~~~~~~ 179 (618)
.++ .+ .+++++..|+++|.+|+.+++.+..++ +.|++|.|+.+|+..+.
T Consensus 364 d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~-------- 435 (810)
T 3now_A 364 DAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQ-------- 435 (810)
T ss_dssp TTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCG--------
T ss_pred CccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCCh--------
Confidence 011 11 156899999999999998888888888 47999999999997654
Q ss_pred HHHHHHHHHHHHhhhcCc-----------------------------hhh---HHHHhcCChHHHHHhhcCCCHHHHHHH
Q 007104 180 SVIRRAADAITNLAHENS-----------------------------SIK---TRVRMEGGIPPLVELLEFTDTKVQRAA 227 (618)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~-----------------------------~~~---~~~~~~~~i~~L~~ll~~~~~~v~~~a 227 (618)
.++..++++|.|++.+.+ ..+ ..+.+.|++|.|+.++.++++.++..|
T Consensus 436 ~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~A 515 (810)
T 3now_A 436 SCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELI 515 (810)
T ss_dssp GGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHH
Confidence 889999999999998542 122 567788999999999999999999999
Q ss_pred HHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-ChhHHH-HHHhcCCHHHHHHhhcCCCh
Q 007104 228 AGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS-SPNIKK-EVLAAGALQPVIGLLSSCCS 305 (618)
Q Consensus 228 ~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~-~~~~~~~l~~L~~ll~~~~~ 305 (618)
+|+|.|++. +++++..+++.|+++.|+.+|+++++..+..|+|+|.+++.+ ++...- .....|++++|+.+|.+...
T Consensus 516 a~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~ 594 (810)
T 3now_A 516 ARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCT 594 (810)
T ss_dssp HHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSC
T ss_pred HHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCc
Confidence 999999996 678999999999999999999999999999999999999865 332210 00124699999999986533
Q ss_pred -hHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHh-cCCHHHHHHhh
Q 007104 306 -ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAH-NGGLVPLLKLL 383 (618)
Q Consensus 306 -~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~-~~~l~~L~~ll 383 (618)
..+..|+++|.|++..+++.+..+++.|+++.|+.+|.++++.++..|+++|+||+.+++.+..+.. .+.++.|+.++
T Consensus 595 ~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL 674 (810)
T 3now_A 595 ALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLC 674 (810)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHh
Confidence 3457899999999988888888999999999999999999999999999999999998887777775 57899999999
Q ss_pred cCCChhHHHHHHHHHHHhhc-CCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCH
Q 007104 384 DSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEK 462 (618)
Q Consensus 384 ~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 462 (618)
.+.+..++..|+++|.||+. ++.....+++. .++++.|+.++.+++.
T Consensus 675 ~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~--------------------------------~g~I~~Lv~LL~s~d~ 722 (810)
T 3now_A 675 EDEDEETATACAGALAIITSVSVKCCEKILAI--------------------------------ASWLDILHTLIANPSP 722 (810)
T ss_dssp GCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTS--------------------------------TTHHHHHHHHHTCSSH
T ss_pred cCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHH--------------------------------cCCHHHHHHHHCCCCH
Confidence 99999999999999999997 55565566551 3467779999999999
Q ss_pred hHHHHHHHHHHhhcCC-CccccceecCCchHHHHHHhcCC---ChhhhhhHHHHHHHhhhhh
Q 007104 463 GVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGST---NPKQQLDGAVALFKLANKA 520 (618)
Q Consensus 463 ~v~~~a~~~L~~l~~~-~~~~~~~~~~~~l~~L~~ll~~~---~~~v~~~a~~~L~~L~~~~ 520 (618)
.+|..|+++|.|++.+ .+....+.+.|+++.|..+++.+ +.++...|..+|.++....
T Consensus 723 ~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 723 AVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 9999999999999764 44677888999999999999754 7899999999999998763
No 7
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=3.9e-36 Score=316.09 Aligned_cols=373 Identities=22% Similarity=0.311 Sum_probs=318.6
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHH
Q 007104 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (618)
Q Consensus 58 ~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (618)
.+|.++++|... +++.+|.+|+|+|.|++. +++.+..+++.|+||.|+.+|.+++. ++++.|
T Consensus 101 ~ip~LV~lL~~~-----~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~------------~v~e~A 163 (510)
T 3ul1_B 101 LIPKFVSFLGKT-----DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA------------HISEQA 163 (510)
T ss_dssp HHHHHHHHTTCT-----TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHH
T ss_pred CHHHHHHHHCCC-----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCH------------HHHHHH
Confidence 467777777543 356799999999999988 78999999999999999999998776 999999
Q ss_pred HHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHh
Q 007104 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (618)
Q Consensus 137 ~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~l 215 (618)
+++|+||+ ++++++..+.+.|+++.|+.+|...+..... ..+++.+++++.+++.............++++.|+.+
T Consensus 164 ~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~---~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~L 240 (510)
T 3ul1_B 164 VWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLA---CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240 (510)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSC---HHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhh---HHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHH
Confidence 99999999 7899999999999999999999876543221 2678899999999998666555555557889999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHH
Q 007104 216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (618)
Q Consensus 216 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 295 (618)
+.+++++++..++++|.+++...++....+.+.|+++.|+.++.+++..++..++++|++++..++..+..+++.|+++.
T Consensus 241 L~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~ 320 (510)
T 3ul1_B 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAV 320 (510)
T ss_dssp TTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGG
T ss_pred HhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHH
Confidence 99999999999999999999877777778889999999999999999999999999999999998998899999999999
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC--cchhhHhc
Q 007104 296 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH--NQAGIAHN 373 (618)
Q Consensus 296 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~l~~~ 373 (618)
|+.++.+++..+++.++|+|+|++..++.....+.+.|+++.|+.++.+++..++..|+++|+|++.+.. ....+++.
T Consensus 321 L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~ 400 (510)
T 3ul1_B 321 FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHC 400 (510)
T ss_dssp CC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHC
Confidence 9999999999999999999999999889999999999999999999999999999999999999987433 34568899
Q ss_pred CCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHH-HHHhhhhHHH
Q 007104 374 GGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE-EKIHGRVLNH 452 (618)
Q Consensus 374 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 452 (618)
|++++|+++|.+++++++..++.+|.||....+.... . ..+. ...+.+.+..
T Consensus 401 g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~------~---------------------~~~~~~iee~ggl~~ 453 (510)
T 3ul1_B 401 GIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE------T---------------------EKLSIMIEECGGLDK 453 (510)
T ss_dssp TCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTC------H---------------------HHHHHHHHHTTHHHH
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccc------h---------------------HHHHHHHHHcCcHHH
Confidence 9999999999999999999999999999742211000 0 0000 1123456667
Q ss_pred HHHHHhhCCHhHHHHHHHHHHhhcC
Q 007104 453 LLYLMRVAEKGVQRRVALALAHLCS 477 (618)
Q Consensus 453 L~~ll~~~~~~v~~~a~~~L~~l~~ 477 (618)
+-.+..+++.+++..|..+|-..-.
T Consensus 454 ie~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 454 IEALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 7777788899999999999987754
No 8
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.2e-35 Score=316.57 Aligned_cols=432 Identities=22% Similarity=0.223 Sum_probs=367.4
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHH
Q 007104 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (618)
Q Consensus 57 ~~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (618)
..++.+++.|.+. .+..++..|+..|.+++.+++++..+++.|++|.|+++|++++. .++..|
T Consensus 59 ~~i~~Lv~~L~~~-----~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~------------~v~~~a 121 (529)
T 1jdh_A 59 QMVSAIVRTMQNT-----NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD------------SVLFYA 121 (529)
T ss_dssp HHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHH
T ss_pred chHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCH------------HHHHHH
Confidence 4566677776542 25668999999999999988899999999999999999998765 999999
Q ss_pred HHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHh
Q 007104 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (618)
Q Consensus 137 ~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~l 215 (618)
+++|.+++ .++..+..+.+.|+++.|+.+|++.+. +++..++.+|.+++..++..+..+...|+++.++.+
T Consensus 122 ~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~--------~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~l 193 (529)
T 1jdh_A 122 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV--------KFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 193 (529)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 99999999 667788888899999999999998654 888999999999999888899999999999999999
Q ss_pred hcCCC-HHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHH
Q 007104 216 LEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (618)
Q Consensus 216 l~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 294 (618)
+++++ ...+..++.+|.+++. .+.++..+.+.|+++.|+.++.++++.++..++++|.+++...+... ...++++
T Consensus 194 l~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~ 269 (529)
T 1jdh_A 194 MRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLG 269 (529)
T ss_dssp HHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHH
Confidence 98765 5677788999999997 68888999999999999999999999999999999999987654321 1246799
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCCc----ch
Q 007104 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQDMHN----QA 368 (618)
Q Consensus 295 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~----~~ 368 (618)
.|+.++.+.+++++..++++|++++..++..+..+.+.|+++.|+.+|.+ .++.++..++++|+||+.+... +.
T Consensus 270 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 349 (529)
T 1jdh_A 270 TLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 349 (529)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 99999999999999999999999998878888999999999999999975 3489999999999999876432 45
Q ss_pred hhHhcCCHHHHHHhhcCCC-hhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhh-hH----------------
Q 007104 369 GIAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ-AT---------------- 430 (618)
Q Consensus 369 ~l~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~-~~---------------- 430 (618)
.+...++++.|++++.+++ +.++..++++|.|++.++++...+.+.|+++.|.+...... ..
T Consensus 350 ~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~ 429 (529)
T 1jdh_A 350 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 429 (529)
T ss_dssp HHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTT
T ss_pred HHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhcc
Confidence 7888899999999999876 59999999999999999888899999999998876432211 00
Q ss_pred ------HHHHHHHHHH-------HHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHH
Q 007104 431 ------KDCVAKTLKR-------LEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGL 497 (618)
Q Consensus 431 ------~~~~~~~~~~-------~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~l 497 (618)
.......+.+ -....+.++++.|+.++.++++.++..++++|.+++.+++.+..+.+.|+++.|..+
T Consensus 430 ~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l 509 (529)
T 1jdh_A 430 VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTEL 509 (529)
T ss_dssp BCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHG
T ss_pred ccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHH
Confidence 0011112211 123457789999999999999999999999999999877777888899999999999
Q ss_pred hcCCChhhhhhHHHHHHHhh
Q 007104 498 LGSTNPKQQLDGAVALFKLA 517 (618)
Q Consensus 498 l~~~~~~v~~~a~~~L~~L~ 517 (618)
+.+++++++..|.++|.+|+
T Consensus 510 ~~~~~~~v~~~a~~aL~~l~ 529 (529)
T 1jdh_A 510 LHSRNEGVATYAAAVLFRMS 529 (529)
T ss_dssp GGCSSHHHHHHHHHHHHHHC
T ss_pred hcCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999874
No 9
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.2e-35 Score=314.28 Aligned_cols=366 Identities=22% Similarity=0.304 Sum_probs=317.7
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHH
Q 007104 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (618)
Q Consensus 58 ~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (618)
.+|.++++|... .++.+|.+|+++|.+++. +++.+..+++.|+||.|+.+|.+++. ++++.|
T Consensus 120 ~ip~Lv~lL~~~-----~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~------------~v~e~A 182 (529)
T 3tpo_A 120 LIPKFVSFLGKT-----DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA------------HISEQA 182 (529)
T ss_dssp HHHHHHHHHTCT-----TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHH
T ss_pred CHHHHHHHHcCC-----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH------------HHHHHH
Confidence 456677766543 356789999999999998 68888999999999999999998887 999999
Q ss_pred HHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHh
Q 007104 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (618)
Q Consensus 137 ~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~l 215 (618)
+++|++|+ ++++++..++..|+++.|+.+|......... ..+++.++++|.+++.............++++.|+.+
T Consensus 183 ~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~---~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~L 259 (529)
T 3tpo_A 183 VWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLA---CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 259 (529)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSC---HHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhH---HHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHH
Confidence 99999999 7899999999999999999999876543211 2678899999999998766655555667889999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHH
Q 007104 216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (618)
Q Consensus 216 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 295 (618)
+.+++++++..++++|.+++.+.++....+.+.|+++.|+.+|.+++..++..++++|++++.+++..+..++..|+++.
T Consensus 260 L~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~ 339 (529)
T 3tpo_A 260 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAV 339 (529)
T ss_dssp TTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGG
T ss_pred hcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHH
Confidence 99999999999999999999877777788889999999999999999999999999999999998988899999999999
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC--cchhhHhc
Q 007104 296 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH--NQAGIAHN 373 (618)
Q Consensus 296 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~l~~~ 373 (618)
|+.++.+++..++..|+|+|+|++.+++.....+.+.|+++.|+.+|.+++..++..|+|+|+|++.+.. ....+++.
T Consensus 340 L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~ 419 (529)
T 3tpo_A 340 FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHC 419 (529)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHC
Confidence 9999999999999999999999999889999999999999999999999999999999999999987433 34568899
Q ss_pred CCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCc-------chhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHh
Q 007104 374 GGLVPLLKLLDSKNGSLQHNAAFALYGLADNED-------NVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 446 (618)
Q Consensus 374 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-------~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (618)
|++++|+++|.+++++++..++.+|.||....+ ....+. +
T Consensus 420 g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~ie---------------------------------e 466 (529)
T 3tpo_A 420 GIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIE---------------------------------E 466 (529)
T ss_dssp TCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH---------------------------------H
T ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHH---------------------------------H
Confidence 999999999999999999999999999963211 111122 3
Q ss_pred hhhHHHHHHHHhhCCHhHHHHHHHHHHhhc
Q 007104 447 GRVLNHLLYLMRVAEKGVQRRVALALAHLC 476 (618)
Q Consensus 447 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 476 (618)
.+.+..+-.+..+.+.+++..|..+|-..-
T Consensus 467 ~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 467 CGGLDKIEALQRHENESVYKASLNLIEKYF 496 (529)
T ss_dssp TTCHHHHTGGGGCSSHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 345556667778889999999999997764
No 10
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.3e-35 Score=320.28 Aligned_cols=435 Identities=22% Similarity=0.222 Sum_probs=371.2
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHH
Q 007104 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (618)
Q Consensus 57 ~~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (618)
..++.+++.|.+. .+.+++..|+.+|.+++.+++++..+.+.|+++.|+.+|++++. .++..|
T Consensus 56 ~~i~~Lv~~L~~~-----~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~------------~v~~~A 118 (644)
T 2z6h_A 56 QMVSAIVRTMQNT-----NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD------------SVLFYA 118 (644)
T ss_dssp HHHHHHHHHHHSC-----CCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSH------------HHHHHH
T ss_pred ChHHHHHHHHhcC-----CCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCH------------HHHHHH
Confidence 4567777777643 25678999999999999988899999999999999999998765 999999
Q ss_pred HHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHh
Q 007104 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (618)
Q Consensus 137 ~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~l 215 (618)
+++|.+++ ..+..+..+.+.|+++.|+.+|++.+. .++..++.+|.+++..++..+..+...|+++.|+.+
T Consensus 119 ~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~--------~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~l 190 (644)
T 2z6h_A 119 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV--------KFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 190 (644)
T ss_dssp HHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCH--------HHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHH
Confidence 99999999 667788888899999999999998754 788888999999998888889999999999999999
Q ss_pred hcCCC-HHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHH
Q 007104 216 LEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (618)
Q Consensus 216 l~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 294 (618)
+++.+ ..++..++.+|.+++. .+.++..+.+.|+++.|+.++.+++..++..++++|.+++...+.. ....++++
T Consensus 191 L~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~ 266 (644)
T 2z6h_A 191 MRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLG 266 (644)
T ss_dssp HTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHH
Confidence 98765 6788899999999996 7888999999999999999999999999999999999998764331 11236799
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-C-CHHHHHHHHHHHHHhhcCCC----cch
Q 007104 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-P-DVQLREMSAFALGRLAQDMH----NQA 368 (618)
Q Consensus 295 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~-~-~~~v~~~a~~~L~~l~~~~~----~~~ 368 (618)
.|+.++.+.+++++..++++|++++..++..+..+.+.|+++.|+.+|.+ + .+.++..++++|+||+.... .+.
T Consensus 267 ~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~ 346 (644)
T 2z6h_A 267 TLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 346 (644)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 99999999999999999999999998878888889999999999999986 3 38999999999999987533 234
Q ss_pred hhHhcCCHHHHHHhhcCCC-hhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhh--------------------
Q 007104 369 GIAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIV-------------------- 427 (618)
Q Consensus 369 ~l~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~-------------------- 427 (618)
.+...++++.|++++.+.+ +.++..++++|.||+.++++...+.+.|+++.|.+.....
T Consensus 347 ~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~ 426 (644)
T 2z6h_A 347 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 426 (644)
T ss_dssp HHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCS
T ss_pred HHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhccc
Confidence 5778899999999998875 6999999999999999988989999999999887643321
Q ss_pred ---hhHHHHHHHHHHHH-------HHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHH
Q 007104 428 ---QATKDCVAKTLKRL-------EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGL 497 (618)
Q Consensus 428 ---~~~~~~~~~~~~~~-------~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~l 497 (618)
..+.......+.++ ......++++.|+.++.+.++.++..++++|.+++..++.+..+.+.|+++.|..+
T Consensus 427 ~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~l 506 (644)
T 2z6h_A 427 VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTEL 506 (644)
T ss_dssp SCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHH
Confidence 11111222222222 23447789999999999999999999999999999877788888899999999999
Q ss_pred hcCCChhhhhhHHHHHHHhhhhh
Q 007104 498 LGSTNPKQQLDGAVALFKLANKA 520 (618)
Q Consensus 498 l~~~~~~v~~~a~~~L~~L~~~~ 520 (618)
+.++++++|..|+++|.+|+.+.
T Consensus 507 l~~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 507 LHSRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTTS
T ss_pred HcCCCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999998864
No 11
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=2.4e-35 Score=305.29 Aligned_cols=365 Identities=19% Similarity=0.198 Sum_probs=307.5
Q ss_pred HhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccch
Q 007104 101 VEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVN 179 (618)
Q Consensus 101 ~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~ 179 (618)
.+.+.+|.|+.+|.+++. +++..|+++|.+++ .+++++..+++.|+||.|+.+|+..+.
T Consensus 45 ~~~~~i~~LV~~L~s~~~------------~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~-------- 104 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLD------------AVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK-------- 104 (584)
T ss_dssp CCCCCHHHHHHHTTCSCH------------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSH--------
T ss_pred cccccHHHHHHHHCCCCH------------HHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCH--------
Confidence 457889999999998776 99999999999999 799999999999999999999998765
Q ss_pred HHHHHHHHHHHHhhhc-CchhhHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHh
Q 007104 180 SVIRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 257 (618)
Q Consensus 180 ~~~~~a~~~L~~L~~~-~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l 257 (618)
++++.|+++|.||+.. +++++..+.+.|+|+.|+.+|.+ .+.++++.++++|++|+. +++++..+++ ++++.|+++
T Consensus 105 ~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~L 182 (584)
T 3l6x_A 105 EVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDE 182 (584)
T ss_dssp HHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHH
Confidence 9999999999999985 68899999999999999999997 678999999999999997 6888888885 579999997
Q ss_pred hc------------------CCCHHHHHHHHHHHHHHhcCChhHHHHHHhc-CCHHHHHHhhcC------CChhHHHHHH
Q 007104 258 LR------------------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLSS------CCSESQREAA 312 (618)
Q Consensus 258 l~------------------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~------~~~~~~~~a~ 312 (618)
+. ..++.++..|+++|.||+..+++.++.+.+. |+++.|+.++.+ .+....+.|+
T Consensus 183 L~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav 262 (584)
T 3l6x_A 183 VIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCV 262 (584)
T ss_dssp THHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHH
T ss_pred HhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHH
Confidence 61 2357999999999999999888878888875 556799999874 4567899999
Q ss_pred HHHHHHhcCChh-------------------------hHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCCc
Q 007104 313 LLLGQFAATDSD-------------------------CKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHN 366 (618)
Q Consensus 313 ~~L~~l~~~~~~-------------------------~~~~l~~~~~~~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~ 366 (618)
++|.||+..... ....+++.++++.|+.+|+ +.++.+++.|+++|.|||.+...
T Consensus 263 ~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~ 342 (584)
T 3l6x_A 263 CLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWT 342 (584)
T ss_dssp HHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSH
T ss_pred HHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcc
Confidence 999999844110 0111223345678889896 46899999999999999986532
Q ss_pred -----chhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHH
Q 007104 367 -----QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRL 441 (618)
Q Consensus 367 -----~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 441 (618)
+..+.+.++++.|+++|.+++..++..|+++|.||+.+..++..+ .
T Consensus 343 ~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~---------------------------- 393 (584)
T 3l6x_A 343 YGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-G---------------------------- 393 (584)
T ss_dssp HHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-H----------------------------
T ss_pred ccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-H----------------------------
Confidence 334556788999999999999999999999999999988775544 3
Q ss_pred HHHHhhhhHHHHHHHHhhC--------CHhHHHHHHHHHHhhcC-CCccccceecCCchHHHHHHhcCC--ChhhhhhHH
Q 007104 442 EEKIHGRVLNHLLYLMRVA--------EKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGST--NPKQQLDGA 510 (618)
Q Consensus 442 ~~~~~~~~l~~L~~ll~~~--------~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~ 510 (618)
.++++.|+.+|.++ +.+++..|+++|.|++. ++.++..+.+.|+++.|+++++++ .+.+++.|+
T Consensus 394 -----~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa 468 (584)
T 3l6x_A 394 -----KHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAA 468 (584)
T ss_dssp -----HHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHH
T ss_pred -----hCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHH
Confidence 24678899999886 46889999999999965 456888888999999999999986 889999999
Q ss_pred HHHHHhhhhhc
Q 007104 511 VALFKLANKAT 521 (618)
Q Consensus 511 ~~L~~L~~~~~ 521 (618)
++|++|..+..
T Consensus 469 ~vL~nl~~~~e 479 (584)
T 3l6x_A 469 LVLQTIWGYKE 479 (584)
T ss_dssp HHHHHHHTSHH
T ss_pred HHHHHHHcCHH
Confidence 99999987643
No 12
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.7e-35 Score=300.16 Aligned_cols=365 Identities=19% Similarity=0.217 Sum_probs=298.4
Q ss_pred HHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHHHhCCcH-
Q 007104 82 RATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGAL- 159 (618)
Q Consensus 82 ~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l- 159 (618)
+..+.|..+..+++.+..+++.|++|.|+++|+..+.+....++...+++++..|+|+|.||+ ..++......+.+++
T Consensus 48 ~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~ 127 (458)
T 3nmz_A 48 DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLH 127 (458)
T ss_dssp HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHH
Confidence 368889999999999999999999999999999754422222233345699999999999999 777777777777777
Q ss_pred ---------HHHHHHHhhccCCCC------cccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcC------
Q 007104 160 ---------SHLVNLLKRHMDSNC------SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF------ 218 (618)
Q Consensus 160 ---------~~L~~lL~~~~~~~~------~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~------ 218 (618)
+.+++++........ ..+......+|+++|.|++. ++++|..+.+.|+++.|+.++..
T Consensus 128 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~ 206 (458)
T 3nmz_A 128 LLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYG 206 (458)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHST
T ss_pred HHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccc
Confidence 556666666531111 01111334489999999987 58899999999999999999952
Q ss_pred -----CCHHHHHHHHHHHHHhhcCCcccHHHHHh-cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-ChhHHHHHHhcC
Q 007104 219 -----TDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRSEDSAIHYEAVGVIGNLVHS-SPNIKKEVLAAG 291 (618)
Q Consensus 219 -----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~ 291 (618)
.++.++..|+++|.+|+.+++.++..+.. .|+++.|+.+|++++++++..|+|+|+||+.. ++..+..+.+.|
T Consensus 207 ~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~G 286 (458)
T 3nmz_A 207 LTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVG 286 (458)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTT
T ss_pred cccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcC
Confidence 34679999999999999866667766654 56699999999999999999999999999885 567888899999
Q ss_pred CHHHHHHhh-cCCChhHHHHHHHHHHHHhcCChhhHHHHH-hcCChHHHHHhhCCCCH----HHHHHHHHHHHHhhc---
Q 007104 292 ALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIV-QRGAVRPLIEMLQSPDV----QLREMSAFALGRLAQ--- 362 (618)
Q Consensus 292 ~l~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~-~~~~~~~L~~lL~~~~~----~v~~~a~~~L~~l~~--- 362 (618)
+++.|+.+| .+.+..+++.++.+|+|++..+++.+..+. ..|+++.|+.+|.+++. .+++.++++|.||+.
T Consensus 287 aI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a 366 (458)
T 3nmz_A 287 SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA 366 (458)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhccc
Confidence 999999975 556788999999999999975666677776 78999999999987543 589999999999995
Q ss_pred -CCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhh-cCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHH
Q 007104 363 -DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKR 440 (618)
Q Consensus 363 -~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 440 (618)
+++++..+.+.|+++.|+.+|.+++..+++.|+++|+||+ .+++++..+++.|
T Consensus 367 ~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G------------------------- 421 (458)
T 3nmz_A 367 TNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG------------------------- 421 (458)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHT-------------------------
T ss_pred CCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCC-------------------------
Confidence 5566777889999999999999999999999999999999 5677777776665
Q ss_pred HHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCc
Q 007104 441 LEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 480 (618)
Q Consensus 441 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 480 (618)
+++.|+.+|++.++.++..|+++|.||+....
T Consensus 422 --------~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 422 --------AVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp --------HHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred --------CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 56668899999999999999999999987654
No 13
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=3.4e-35 Score=304.09 Aligned_cols=372 Identities=19% Similarity=0.230 Sum_probs=305.9
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHH
Q 007104 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (618)
Q Consensus 58 ~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (618)
.++.+|++|.+. +..+|..|++.|.+++. +++++..+++.|+||.|+.+|.+++. ++++.|
T Consensus 49 ~i~~LV~~L~s~------~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~------------~vq~~A 110 (584)
T 3l6x_A 49 ELPEVIAMLGFR------LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK------------EVHLGA 110 (584)
T ss_dssp CHHHHHHHTTCS------CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSH------------HHHHHH
T ss_pred cHHHHHHHHCCC------CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCH------------HHHHHH
Confidence 478888888765 56789999999999997 89999999999999999999998876 999999
Q ss_pred HHHHHHhcC--ChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHH
Q 007104 137 AFALGLLAV--KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (618)
Q Consensus 137 ~~~L~~l~~--~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ 214 (618)
+++|.||+. +++++..+++.|+|+.|+.+|+...+. ++++.++++|+||+. ++.++..+.. ++++.|++
T Consensus 111 a~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~-------~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~ 181 (584)
T 3l6x_A 111 CGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDM-------DLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTD 181 (584)
T ss_dssp HHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSH-------HHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCH-------HHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHH
Confidence 999999994 599999999999999999999985332 889999999999998 6777887874 67999999
Q ss_pred hhc------------------CCCHHHHHHHHHHHHHhhcCCcccHHHHHhc-CCHHHHHHhhcC------CCHHHHHHH
Q 007104 215 LLE------------------FTDTKVQRAAAGALRTLAFKNDENKNQIVEC-NALPTLILMLRS------EDSAIHYEA 269 (618)
Q Consensus 215 ll~------------------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~L~~ll~~------~~~~v~~~a 269 (618)
++. ..++.++..|+++|.||+..+++.+..+.+. |+++.|+.++++ .+...++.|
T Consensus 182 LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~ena 261 (584)
T 3l6x_A 182 EVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENC 261 (584)
T ss_dssp HTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHH
T ss_pred HHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHH
Confidence 872 2357999999999999998767778888875 556899999874 467889999
Q ss_pred HHHHHHHhcCChhH-------------------------HHHHHhcCCHHHHHHhhc-CCChhHHHHHHHHHHHHhcCCh
Q 007104 270 VGVIGNLVHSSPNI-------------------------KKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDS 323 (618)
Q Consensus 270 ~~~L~~l~~~~~~~-------------------------~~~~~~~~~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~ 323 (618)
+++|+||+...... ...+...++++.++.+|. +.+..+++.|+++|.|++.+..
T Consensus 262 v~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~ 341 (584)
T 3l6x_A 262 VCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRW 341 (584)
T ss_dssp HHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCS
T ss_pred HHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCc
Confidence 99999998652100 001112234677888996 4578999999999999987652
Q ss_pred ----hhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCC--------ChhHH
Q 007104 324 ----DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK--------NGSLQ 391 (618)
Q Consensus 324 ----~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~--------~~~v~ 391 (618)
..+..+.+.++++.|+.+|.+++..++..++++|+||+.+..++..+ ..++++.|+++|.+. +.+++
T Consensus 342 ~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~ 420 (584)
T 3l6x_A 342 TYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTV 420 (584)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHH
T ss_pred cccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhcCCcccccccchHHHH
Confidence 23334455788999999999999999999999999999988887655 678999999999875 35788
Q ss_pred HHHHHHHHHhh-cCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhC--CHhHHHHH
Q 007104 392 HNAAFALYGLA-DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA--EKGVQRRV 468 (618)
Q Consensus 392 ~~a~~~L~~l~-~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a 468 (618)
..|+++|.||+ .++++...+.+.| .++.|+.++++. .+.++..|
T Consensus 421 ~~a~~tL~NL~a~~~~~~~~I~~~g---------------------------------~I~~Lv~LL~s~~~~~~v~k~A 467 (584)
T 3l6x_A 421 ISILNTINEVIAENLEAAKKLRETQ---------------------------------GIEKLVLINKSGNRSEKEVRAA 467 (584)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTT---------------------------------HHHHHHHHHTCSSSCHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCC---------------------------------ChHHHHHHHhCCCCChHHHHHH
Confidence 99999999996 5577777776665 556688999886 88999999
Q ss_pred HHHHHhhcCCCccccceecCCc
Q 007104 469 ALALAHLCSPDDQRTIFIDGGG 490 (618)
Q Consensus 469 ~~~L~~l~~~~~~~~~~~~~~~ 490 (618)
+++|+++....+.+..+.+.|+
T Consensus 468 a~vL~nl~~~~elr~~~kk~G~ 489 (584)
T 3l6x_A 468 ALVLQTIWGYKELRKPLEKEGW 489 (584)
T ss_dssp HHHHHHHHTSHHHHHHHHTTTC
T ss_pred HHHHHHHHcCHHHHHHHHHcCC
Confidence 9999999988876666555444
No 14
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=5.6e-35 Score=321.68 Aligned_cols=435 Identities=22% Similarity=0.228 Sum_probs=367.6
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHH
Q 007104 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (618)
Q Consensus 58 ~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (618)
.++.+++.|.+. .+..++..|+.+|.+++.+++++..+.+.|+++.|+.+|++++. .++..|+
T Consensus 193 ~i~~Lv~~L~~~-----~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~------------~v~~~A~ 255 (780)
T 2z6g_A 193 MVSAIVRTMQNT-----NDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVD------------SVLFHAI 255 (780)
T ss_dssp HHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHHH
T ss_pred hHHHHHHHHcCC-----CCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCH------------HHHHHHH
Confidence 344455555432 26678999999999999988889999999999999999998765 9999999
Q ss_pred HHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhh
Q 007104 138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216 (618)
Q Consensus 138 ~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll 216 (618)
++|.+|+ ..+..+..+.+.|+++.|+.+|++.+. .++..++.+|.+++..+++.+..+...|+++.|+.++
T Consensus 256 ~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~--------~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL 327 (780)
T 2z6g_A 256 TTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV--------KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM 327 (780)
T ss_dssp HHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHH
Confidence 9999999 667888888899999999999998544 8889999999999988888899899999999999999
Q ss_pred cCCC-HHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHH
Q 007104 217 EFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (618)
Q Consensus 217 ~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 295 (618)
++.+ ...+..++.+|.+++. .+.++..+++.|+++.|+.++.+.+..++..++++|.+++...... ....++++.
T Consensus 328 ~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~ 403 (780)
T 2z6g_A 328 RTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGT 403 (780)
T ss_dssp TTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHH
Confidence 8865 4566788999999996 6788889999999999999999999999999999999998765331 112457899
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-C-CHHHHHHHHHHHHHhhcCCCc----chh
Q 007104 296 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-P-DVQLREMSAFALGRLAQDMHN----QAG 369 (618)
Q Consensus 296 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~-~-~~~v~~~a~~~L~~l~~~~~~----~~~ 369 (618)
|+.++.+.+++++..++++|++++..++..+..+.+.|+++.|+.+|.+ + ...++..++++|+||+..... +..
T Consensus 404 Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~ 483 (780)
T 2z6g_A 404 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNA 483 (780)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 9999999999999999999999998888888889999999999999976 3 358999999999999875433 346
Q ss_pred hHhcCCHHHHHHhhcCCCh-hHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhh--------------------
Q 007104 370 IAHNGGLVPLLKLLDSKNG-SLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ-------------------- 428 (618)
Q Consensus 370 l~~~~~l~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~-------------------- 428 (618)
+...++++.|++++.+.+. .++..|+++|.||+.++.+...+.+.|+++.|++......
T Consensus 484 v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~ 563 (780)
T 2z6g_A 484 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 563 (780)
T ss_dssp HHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTC
T ss_pred HHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhccc
Confidence 7788999999999988764 9999999999999998888888889999888876432211
Q ss_pred ---hHHHHHHHHHHHH-------HHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHh
Q 007104 429 ---ATKDCVAKTLKRL-------EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLL 498 (618)
Q Consensus 429 ---~~~~~~~~~~~~~-------~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll 498 (618)
.++......+.++ ......++++.|+.++.++++.++..++.+|.+++..++.+..+.+.|+++.|+.++
T Consensus 564 ~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll 643 (780)
T 2z6g_A 564 RMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 643 (780)
T ss_dssp CHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGG
T ss_pred ChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHH
Confidence 1122222222222 224478899999999999999999999999999998877888888999999999999
Q ss_pred cCCChhhhhhHHHHHHHhhhhhc
Q 007104 499 GSTNPKQQLDGAVALFKLANKAT 521 (618)
Q Consensus 499 ~~~~~~v~~~a~~~L~~L~~~~~ 521 (618)
.++++++|..|+++|.+++.+.+
T Consensus 644 ~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 644 HSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp GCSCHHHHHHHHHHHHHHHTTSC
T ss_pred cCCCHHHHHHHHHHHHHHHcCCh
Confidence 99999999999999999998643
No 15
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=1.2e-34 Score=302.22 Aligned_cols=402 Identities=16% Similarity=0.214 Sum_probs=341.8
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHhcc--ChhhHHHHHhC-CCHHHHHHhhcCCCCCccccCCCcchhHHHHH
Q 007104 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (618)
Q Consensus 59 v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~-g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (618)
++.+++.+.+. +..++..|+..|..+.. .......+++. |++|.|+++|++++. +.++..
T Consensus 22 l~~l~~~l~s~------~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~-----------~~v~~~ 84 (450)
T 2jdq_A 22 TSDMIEMIFSK------SPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKEN-----------CTLQFE 84 (450)
T ss_dssp CHHHHHHHHSS------CHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTC-----------HHHHHH
T ss_pred HHHHHHHhcCC------CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCC-----------HHHHHH
Confidence 67777777654 56789999999999753 22233456677 999999999988732 299999
Q ss_pred HHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHH
Q 007104 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (618)
Q Consensus 136 a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ 214 (618)
|+++|.+++ .+++....+++.|+++.|+.+|++.+. +++..|+++|.+++..++..+..+...|+++.++.
T Consensus 85 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~--------~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 156 (450)
T 2jdq_A 85 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE--------DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQ 156 (450)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHH
Confidence 999999999 678888888899999999999998654 99999999999999988888888888999999999
Q ss_pred hhcC-CCHHHHHHHHHHHHHhhcCC-cccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCC
Q 007104 215 LLEF-TDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 292 (618)
Q Consensus 215 ll~~-~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 292 (618)
++.+ .++.++..++++|.+++... +.....+. .++++.|+.++.++++.++..++++|.+++...+.....+...|+
T Consensus 157 ~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 235 (450)
T 2jdq_A 157 LFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGV 235 (450)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTT
T ss_pred HhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCc
Confidence 9996 78999999999999999754 33333333 789999999999999999999999999999887777788888999
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC-cchhhH
Q 007104 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH-NQAGIA 371 (618)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~l~ 371 (618)
++.|+.++.+.++.++..++++|++++..++.....+.+.|+++.|+.+|.++++.++..++++|++++.+.. ....+.
T Consensus 236 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~ 315 (450)
T 2jdq_A 236 CRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVI 315 (450)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999998877777778889999999999999999999999999999997543 344567
Q ss_pred hcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcC--CcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhh
Q 007104 372 HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRV 449 (618)
Q Consensus 372 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (618)
+.++++.|++++.++++.++..|+++|.+++.. ++....++ +.++
T Consensus 316 ~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~---------------------------------~~~~ 362 (450)
T 2jdq_A 316 DANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLV---------------------------------ELGC 362 (450)
T ss_dssp HTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHH---------------------------------HHTC
T ss_pred HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHH---------------------------------HCCC
Confidence 789999999999999999999999999999853 33333333 3457
Q ss_pred HHHHHHHHhhCCHhHHHHHHHHHHhhcCCCc------------cccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhh
Q 007104 450 LNHLLYLMRVAEKGVQRRVALALAHLCSPDD------------QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 517 (618)
Q Consensus 450 l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~------------~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 517 (618)
++.|+.++.++++.++..++++|.+++...+ ....+.+.|+++.|..+..++++.++..|..+|.++.
T Consensus 363 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 363 IKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 7889999999999999999999999975332 2245667899999999999999999999999999887
Q ss_pred hh
Q 007104 518 NK 519 (618)
Q Consensus 518 ~~ 519 (618)
..
T Consensus 443 ~~ 444 (450)
T 2jdq_A 443 GT 444 (450)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 16
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.2e-34 Score=308.73 Aligned_cols=434 Identities=21% Similarity=0.245 Sum_probs=357.1
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhC-CCHHHHHHhhcCCCCCccccCCCcchhHHHHH
Q 007104 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (618)
Q Consensus 57 ~~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (618)
..++.++++|.+. ++.++..|+..|.+++.+++.+..++.. |+++.|+++|.+++. ++++..
T Consensus 17 ~~i~~Lv~lL~~~------~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~-----------~~~~~~ 79 (529)
T 1jdh_A 17 RAIPELTKLLNDE------DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND-----------VETARC 79 (529)
T ss_dssp CHHHHHHHHHTCS------CHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCC-----------HHHHHH
T ss_pred hhHHHHHHHhCCC------CHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCC-----------HHHHHH
Confidence 3467777777643 6678999999999999988887777765 899999999976532 289999
Q ss_pred HHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHh
Q 007104 136 SAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (618)
Q Consensus 136 a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~l 215 (618)
|+++|.+++.+++++..+.+.|+++.|+.+|++.+. +++..++++|.+++..++..+..+.+.|+++.|+.+
T Consensus 80 a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~--------~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 151 (529)
T 1jdh_A 80 TAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD--------SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 151 (529)
T ss_dssp HHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHG
T ss_pred HHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHH
Confidence 999999999888899999999999999999998764 899999999999999878888888889999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhHHHHHHhcCCHH
Q 007104 216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (618)
Q Consensus 216 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 294 (618)
+.++++.++..++.+|.+++.++++++..+.+.|+++.|+.++++++ ...+..++.+|.+++.. +..+..+.+.|+++
T Consensus 152 l~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~ 230 (529)
T 1jdh_A 152 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQ 230 (529)
T ss_dssp GGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHH
Confidence 99999999999999999999878889999999999999999998654 55677789999999864 66778888999999
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-CcchhhHhc
Q 007104 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM-HNQAGIAHN 373 (618)
Q Consensus 295 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~l~~~ 373 (618)
.|+.++.+.+.+++..++++|.+++...+... ...++++.|+.++.++++.++..++++|++|+.++ .++..+.+.
T Consensus 231 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 307 (529)
T 1jdh_A 231 ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 307 (529)
T ss_dssp HHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Confidence 99999999999999999999999986543321 12467899999999999999999999999999865 467778889
Q ss_pred CCHHHHHHhhcC--CChhHHHHHHHHHHHhhcCCc----chhHHHhhcccccccccchhhh--hHHHHHHHHHHHH----
Q 007104 374 GGLVPLLKLLDS--KNGSLQHNAAFALYGLADNED----NVADFIRVGGVQKLQDGEFIVQ--ATKDCVAKTLKRL---- 441 (618)
Q Consensus 374 ~~l~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~----~~~~l~~~~~~~~L~~~~~~~~--~~~~~~~~~~~~~---- 441 (618)
++++.|++++.+ .++.++..|+.+|+||+.+.. .+..+.+.|+++.|.+...... ..+......+.++
T Consensus 308 ~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~ 387 (529)
T 1jdh_A 308 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 387 (529)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG
T ss_pred CChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcCh
Confidence 999999999975 347999999999999986532 3567888899988876433321 2333333333333
Q ss_pred ---HHHHhhhhHHHHHHHHhhCCHhHHHHHHHHH----------------------HhhcCCCccccceecCCchHHHHH
Q 007104 442 ---EEKIHGRVLNHLLYLMRVAEKGVQRRVALAL----------------------AHLCSPDDQRTIFIDGGGLELLLG 496 (618)
Q Consensus 442 ---~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L----------------------~~l~~~~~~~~~~~~~~~l~~L~~ 496 (618)
....+.++++.|+.++.++++.+|..++|++ .+++..++.+..+.+.|+++.|+.
T Consensus 388 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ 467 (529)
T 1jdh_A 388 ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQ 467 (529)
T ss_dssp GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHH
T ss_pred hhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHH
Confidence 2345779999999999998888877655544 456666666677889999999999
Q ss_pred HhcCCChhhhhhHHHHHHHhhhh
Q 007104 497 LLGSTNPKQQLDGAVALFKLANK 519 (618)
Q Consensus 497 ll~~~~~~v~~~a~~~L~~L~~~ 519 (618)
++.+++++++..|+++|.+++.+
T Consensus 468 ll~~~~~~v~~~a~~~l~~l~~~ 490 (529)
T 1jdh_A 468 LLYSPIENIQRVAAGVLCELAQD 490 (529)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHcCCchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999864
No 17
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=5e-35 Score=302.75 Aligned_cols=359 Identities=19% Similarity=0.255 Sum_probs=303.0
Q ss_pred CHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHH
Q 007104 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (618)
Q Consensus 105 ~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~ 183 (618)
.+|.|+.+|++++. +++..|+++|.+++ .++..+..+.+.|++|.|+.+|++.+. +++.
T Consensus 3 ~l~~lv~~L~s~~~------------~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~--------~~~~ 62 (457)
T 1xm9_A 3 TIPKAVQYLSSQDE------------KYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ--------NVQQ 62 (457)
T ss_dssp CHHHHHHHHHSSCT------------HHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCH--------HHHH
T ss_pred CHHHHHHHHCCCCH------------HHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCH--------HHHH
Confidence 58999999999877 99999999999999 777788899999999999999997655 8999
Q ss_pred HHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhh----
Q 007104 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML---- 258 (618)
Q Consensus 184 ~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll---- 258 (618)
.|+++|.||+..+++++..+.+.|+++.|+++|. +++++++..++++|.+|+.+ ++++..+.+ |+++.|+.++
T Consensus 63 ~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~ 140 (457)
T 1xm9_A 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPF 140 (457)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccc
Confidence 9999999999977999999999999999999999 88999999999999999985 888888888 9999999999
Q ss_pred ----cC--------CCHHHHHHHHHHHHHHhcCChhHHHHHHhc-CCHHHHHHhhcC------CChhHHHHHHHHHHHHh
Q 007104 259 ----RS--------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLSS------CCSESQREAALLLGQFA 319 (618)
Q Consensus 259 ----~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~------~~~~~~~~a~~~L~~l~ 319 (618)
.+ .++.+...|+|+|+||+.. ++.+..+.+. |+++.|+.++.+ .+..+.+.++.+|.|++
T Consensus 141 s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs 219 (457)
T 1xm9_A 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLS 219 (457)
T ss_dssp HTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHT
T ss_pred cccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcc
Confidence 32 2466778999999999987 7788888887 999999999985 45667888888999986
Q ss_pred cCC--------------------------------------------------hhhHHHHHhcCChHHHHHhhCC-CCHH
Q 007104 320 ATD--------------------------------------------------SDCKVHIVQRGAVRPLIEMLQS-PDVQ 348 (618)
Q Consensus 320 ~~~--------------------------------------------------~~~~~~l~~~~~~~~L~~lL~~-~~~~ 348 (618)
... +.....+++.++++.|+.+|.+ .++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~ 299 (457)
T 1xm9_A 220 YRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDA 299 (457)
T ss_dssp TTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHH
T ss_pred cchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHH
Confidence 210 0111223455678888998875 5799
Q ss_pred HHHHHHHHHHHhhcCCCcc------hhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccc
Q 007104 349 LREMSAFALGRLAQDMHNQ------AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQD 422 (618)
Q Consensus 349 v~~~a~~~L~~l~~~~~~~------~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ 422 (618)
+++.|+|+|+||+.+.... ..+.+.++++.|++++.+++.+++..|+++|.|++.+.++...+
T Consensus 300 ~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i----------- 368 (457)
T 1xm9_A 300 TLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVM----------- 368 (457)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHH-----------
T ss_pred HHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHH-----------
Confidence 9999999999999865432 22346799999999999999999999999999999876654333
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCC------HhHHHHHHHHHHhhcC-CCccccceecCCchHHHH
Q 007104 423 GEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAE------KGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLL 495 (618)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~------~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~l~~L~ 495 (618)
..++++.|+.+|..++ .++...++++|.++.. +++....+.+.|+++.|+
T Consensus 369 -----------------------~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~ 425 (457)
T 1xm9_A 369 -----------------------GNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNII 425 (457)
T ss_dssp -----------------------HHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHH
T ss_pred -----------------------HHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHH
Confidence 2246788999998874 3688899999999975 445677778999999999
Q ss_pred HHhcCC-ChhhhhhHHHHHHHhhhhh
Q 007104 496 GLLGST-NPKQQLDGAVALFKLANKA 520 (618)
Q Consensus 496 ~ll~~~-~~~v~~~a~~~L~~L~~~~ 520 (618)
+++.++ ++++++.|++.|.++..+.
T Consensus 426 ~L~~~~~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 426 NLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHcch
Confidence 999999 9999999999999998764
No 18
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=4e-35 Score=297.47 Aligned_cols=367 Identities=20% Similarity=0.217 Sum_probs=296.9
Q ss_pred CHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCC----CcccchH
Q 007104 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSN----CSRAVNS 180 (618)
Q Consensus 105 ~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~----~~~~~~~ 180 (618)
.++.|+..+.+.+. + ...+.|..+..+++.|..+.+.|++|.|+.+|+..+.+. ......+
T Consensus 33 ~~~~l~~~~~~~~~------------~---~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~ 97 (458)
T 3nmz_A 33 MVYSLLSMLGTHDK------------D---DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKE 97 (458)
T ss_dssp ------------CC------------H---HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHH
T ss_pred HHHHHHHHhcCCCH------------H---HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHH
Confidence 46777777766555 3 377888889999999999999999999999999754310 0111239
Q ss_pred HHHHHHHHHHHhhhcCchhhHHHHhcCCh----------HHHHHhhcCCC--HH-----HHH-------HHHHHHHHhhc
Q 007104 181 VIRRAADAITNLAHENSSIKTRVRMEGGI----------PPLVELLEFTD--TK-----VQR-------AAAGALRTLAF 236 (618)
Q Consensus 181 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~i----------~~L~~ll~~~~--~~-----v~~-------~a~~~L~~l~~ 236 (618)
++..|+|+|.|++.+.++......+.+++ +.+++++.+.. .+ ++. .|.|+|.|++.
T Consensus 98 ~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~ 177 (458)
T 3nmz_A 98 ARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF 177 (458)
T ss_dssp HHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC
Confidence 99999999999999998877777777776 55566665542 11 433 89999999987
Q ss_pred CCcccHHHHHhcCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHHhcCChhHHHHHHh-cCCHHHHHHhhcCCC
Q 007104 237 KNDENKNQIVECNALPTLILMLRS-----------EDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLSSCC 304 (618)
Q Consensus 237 ~~~~~~~~~~~~~~~~~L~~ll~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~ 304 (618)
++++++.+.+.|+++.|+.++.. .++.++..|+|+|.||+.+++..+..+.. .|+++.|+.+|.+++
T Consensus 178 -~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~ 256 (458)
T 3nmz_A 178 -DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 256 (458)
T ss_dssp -SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSC
T ss_pred -CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCC
Confidence 68999999999999999999952 34678999999999999987777666654 556999999999999
Q ss_pred hhHHHHHHHHHHHHhcC-ChhhHHHHHhcCChHHHHHhh-CCCCHHHHHHHHHHHHHhhc-CCCcchhhH-hcCCHHHHH
Q 007104 305 SESQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQ-DMHNQAGIA-HNGGLVPLL 380 (618)
Q Consensus 305 ~~~~~~a~~~L~~l~~~-~~~~~~~l~~~~~~~~L~~lL-~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~-~~~~l~~L~ 380 (618)
.+++..|+++|.|++.. ++.++..+.+.|+++.|+.+| .++++.+++.++.+|+||+. +++++..+. ..|+++.|+
T Consensus 257 ~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv 336 (458)
T 3nmz_A 257 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLV 336 (458)
T ss_dssp HHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHH
Confidence 99999999999999874 567888899999999999975 56789999999999999998 657777777 789999999
Q ss_pred HhhcCCCh----hHHHHHHHHHHHhhc----CCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHH
Q 007104 381 KLLDSKNG----SLQHNAAFALYGLAD----NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNH 452 (618)
Q Consensus 381 ~ll~~~~~----~v~~~a~~~L~~l~~----~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 452 (618)
+++.+.+. ++++.|+++|.||+. +++++..+.+.| .++.
T Consensus 337 ~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G---------------------------------~i~~ 383 (458)
T 3nmz_A 337 GTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN---------------------------------CLQT 383 (458)
T ss_dssp HHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTT---------------------------------HHHH
T ss_pred HHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcc---------------------------------cHHH
Confidence 99987654 489999999999984 677766666655 5677
Q ss_pred HHHHHhhCCHhHHHHHHHHHHhhcC-CCccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhhh
Q 007104 453 LLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (618)
Q Consensus 453 L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (618)
|+.+|++++..++..|+++|.|++. +++++..+.+.|+++.|++++.++++.+++.|+++|.||+.+.
T Consensus 384 Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 384 LLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999984 5678888899999999999999999999999999999999863
No 19
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=4.2e-34 Score=295.82 Aligned_cols=362 Identities=17% Similarity=0.226 Sum_probs=296.7
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHH
Q 007104 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (618)
Q Consensus 59 v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (618)
++.++++|.+. +..+|..|+++|.+++. ++..+..+++.|++|.|+++|++++. +++..|+
T Consensus 4 l~~lv~~L~s~------~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~------------~~~~~A~ 65 (457)
T 1xm9_A 4 IPKAVQYLSSQ------DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ------------NVQQAAA 65 (457)
T ss_dssp HHHHHHHHHSS------CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCH------------HHHHHHH
T ss_pred HHHHHHHHCCC------CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCH------------HHHHHHH
Confidence 57788888876 55689999999999998 56677799999999999999998766 9999999
Q ss_pred HHHHHhc-CChhhHHHHHhCCcHHHHHHHHh-hccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHh
Q 007104 138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLK-RHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (618)
Q Consensus 138 ~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~-~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~l 215 (618)
++|.+|+ .+++++..+++.|++|.|+.+|+ +.+. ++++.++++|+||+.. +..+..+.. |+++.|+.+
T Consensus 66 ~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~--------~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~l 135 (457)
T 1xm9_A 66 GALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNA--------EIQKQLTGLLWNLSST-DELKEELIA-DALPVLADR 135 (457)
T ss_dssp HHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCH--------HHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCH--------HHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHH
Confidence 9999999 66999999999999999999998 4333 9999999999999996 778888888 999999999
Q ss_pred h--------cC--------CCHHHHHHHHHHHHHhhcCCcccHHHHHhc-CCHHHHHHhhcC------CCHHHHHHHHHH
Q 007104 216 L--------EF--------TDTKVQRAAAGALRTLAFKNDENKNQIVEC-NALPTLILMLRS------EDSAIHYEAVGV 272 (618)
Q Consensus 216 l--------~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~L~~ll~~------~~~~v~~~a~~~ 272 (618)
+ .+ .++.+++.|+++|.||+.+ ++++..+.+. |+++.|+.++++ .+..+...++++
T Consensus 136 l~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~ 214 (457)
T 1xm9_A 136 VIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCV 214 (457)
T ss_dssp TTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHH
T ss_pred HhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHH
Confidence 9 32 2467778999999999985 8888999987 999999999985 456788899999
Q ss_pred HHHHhcCC--------------------------------------------------hhHHHHHHhcCCHHHHHHhhcC
Q 007104 273 IGNLVHSS--------------------------------------------------PNIKKEVLAAGALQPVIGLLSS 302 (618)
Q Consensus 273 L~~l~~~~--------------------------------------------------~~~~~~~~~~~~l~~L~~ll~~ 302 (618)
|.+++... +...+.+...|+++.|+.+|.+
T Consensus 215 L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~ 294 (457)
T 1xm9_A 215 LHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK 294 (457)
T ss_dssp HHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHH
T ss_pred HHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhh
Confidence 99986321 0011223345678889999976
Q ss_pred C-ChhHHHHHHHHHHHHhcCChhh-----HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCH
Q 007104 303 C-CSESQREAALLLGQFAATDSDC-----KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGL 376 (618)
Q Consensus 303 ~-~~~~~~~a~~~L~~l~~~~~~~-----~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l 376 (618)
+ ++.+++.|+|+|+|++.++... +..+.+.|+++.|+++|.+++.+++..|+|+|.|++.+..++..+ ..+++
T Consensus 295 ~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i-~~~~i 373 (457)
T 1xm9_A 295 SKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVM-GNQVF 373 (457)
T ss_dssp CCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHH-HHHTH
T ss_pred cCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHH-HHhhh
Confidence 5 6788999999999999765432 223346899999999999999999999999999999976665444 45799
Q ss_pred HHHHHhhcCCCh------hHHHHHHHHHHHhhcC-CcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhh
Q 007104 377 VPLLKLLDSKNG------SLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRV 449 (618)
Q Consensus 377 ~~L~~ll~~~~~------~v~~~a~~~L~~l~~~-~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (618)
++|+++|.+.++ ++...++++|.|+... +++...+.+. +.
T Consensus 374 ~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~---------------------------------g~ 420 (457)
T 1xm9_A 374 PEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSS---------------------------------SM 420 (457)
T ss_dssp HHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCH---------------------------------HH
T ss_pred HHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHc---------------------------------CC
Confidence 999999988643 6888999999999754 4444444443 56
Q ss_pred HHHHHHHHhhC-CHhHHHHHHHHHHhhcCCCcccc
Q 007104 450 LNHLLYLMRVA-EKGVQRRVALALAHLCSPDDQRT 483 (618)
Q Consensus 450 l~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~ 483 (618)
++.|+.++.++ +..++..|+++|.++..+.+.+.
T Consensus 421 l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~~ 455 (457)
T 1xm9_A 421 LNNIINLCRSSASPKAAEAARLLLSDMWSSKELQG 455 (457)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCSS
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhhc
Confidence 77799999999 99999999999999987776543
No 20
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.7e-33 Score=304.04 Aligned_cols=433 Identities=21% Similarity=0.232 Sum_probs=363.2
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhC-CCHHHHHHhhcCCCCCccccCCCcchhHHHHHH
Q 007104 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (618)
Q Consensus 58 ~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (618)
.++.++++|.+. ++.++..|+..|.+++.+...+..++.. |+++.|+++|.+.+. ++++..|
T Consensus 15 ~i~~Lv~lL~~~------~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~-----------~~~~~~A 77 (644)
T 2z6h_A 15 AIPELTKLLNDE------DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND-----------VETARCT 77 (644)
T ss_dssp THHHHHHHHTCS------CHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCC-----------HHHHHHH
T ss_pred hHHHHHHHHcCC------CHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCC-----------HHHHHHH
Confidence 467777777643 6679999999999999977777777765 899999999986532 3899999
Q ss_pred HHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhh
Q 007104 137 AFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216 (618)
Q Consensus 137 ~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll 216 (618)
+.+|.+|+.+++.+..+.+.|+++.|+.+|++.+. .++..|+++|.+++...+..+..+...|+++.|+.++
T Consensus 78 ~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~--------~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL 149 (644)
T 2z6h_A 78 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD--------SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 149 (644)
T ss_dssp HHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSH--------HHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCH--------HHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHH
Confidence 99999999888899999999999999999988754 9999999999999998777788888899999999999
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHH
Q 007104 217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (618)
Q Consensus 217 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 295 (618)
+++++.++..++.+|.+++..+++++..+.+.|+++.|+.++++.+ ..++..++.+|.+++.. +..+..+++.|+++.
T Consensus 150 ~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~ 228 (644)
T 2z6h_A 150 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQA 228 (644)
T ss_dssp GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHH
Confidence 9999999999999999999878889999999999999999999654 67788999999999864 667888999999999
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-CcchhhHhcC
Q 007104 296 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM-HNQAGIAHNG 374 (618)
Q Consensus 296 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~l~~~~ 374 (618)
|+.++.+.+..++..++++|.|++...+.. ....++++.|+.++.+.++.++..++++|++|+.+. .++..+.+.+
T Consensus 229 L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g 305 (644)
T 2z6h_A 229 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 305 (644)
T ss_dssp HHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 999999999999999999999998654331 112367999999999999999999999999999865 4567788889
Q ss_pred CHHHHHHhhcCC--ChhHHHHHHHHHHHhhcCCc----chhHHHhhcccccccccchhh--hhHHHHHHHHHHHH-----
Q 007104 375 GLVPLLKLLDSK--NGSLQHNAAFALYGLADNED----NVADFIRVGGVQKLQDGEFIV--QATKDCVAKTLKRL----- 441 (618)
Q Consensus 375 ~l~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~----~~~~l~~~~~~~~L~~~~~~~--~~~~~~~~~~~~~~----- 441 (618)
+++.|+.++.+. .+.++..|+.+|.||+.... ....+.+.|+++.|.+..... ...+......+.++
T Consensus 306 ~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~ 385 (644)
T 2z6h_A 306 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 385 (644)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred CHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH
Confidence 999999999763 37999999999999986432 234577788888887654432 23333334444443
Q ss_pred --HHHHhhhhHHHHHHHHhhCC----------------------HhHHHHHHHHHHhhcCCCccccceecCCchHHHHHH
Q 007104 442 --EEKIHGRVLNHLLYLMRVAE----------------------KGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGL 497 (618)
Q Consensus 442 --~~~~~~~~l~~L~~ll~~~~----------------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~l 497 (618)
......++++.|+.++.+.+ ..++..++.+|.+++.+...+..+.+.|+++.|+.+
T Consensus 386 ~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~l 465 (644)
T 2z6h_A 386 NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQL 465 (644)
T ss_dssp GHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHH
Confidence 33457899999999998853 456678888889998888888888899999999999
Q ss_pred hcCCChhhhhhHHHHHHHhhhh
Q 007104 498 LGSTNPKQQLDGAVALFKLANK 519 (618)
Q Consensus 498 l~~~~~~v~~~a~~~L~~L~~~ 519 (618)
+.+++++++..|+++|.+++..
T Consensus 466 L~~~~~~v~~~a~~aL~~l~~~ 487 (644)
T 2z6h_A 466 LYSPIENIQRVAAGVLCELAQD 487 (644)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTS
T ss_pred HcCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999864
No 21
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=9.9e-33 Score=293.28 Aligned_cols=377 Identities=20% Similarity=0.278 Sum_probs=315.8
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHH
Q 007104 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (618)
Q Consensus 58 ~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (618)
.++.++++|.+. .+..++..|+++|.+++. +++.+..+++.|++|.|+.+|.+++. .++..|
T Consensus 118 ~v~~Lv~lL~~~-----~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~------------~v~~~a 180 (528)
T 4b8j_A 118 VVPRFVQFLTRE-----DFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSD------------DVREQA 180 (528)
T ss_dssp CHHHHHHHHTCT-----TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHH
T ss_pred CHHHHHHHhCCC-----CCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCH------------HHHHHH
Confidence 345556655543 226789999999999999 58999999999999999999998665 999999
Q ss_pred HHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHh
Q 007104 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (618)
Q Consensus 137 ~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~l 215 (618)
+++|++|+ .++.++..+...|+++.|+.+|....+ ..++..++++|.+|+...+... .....++++.|+.+
T Consensus 181 ~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~-------~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~l~~L~~l 252 (528)
T 4b8j_A 181 VWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTK-------LSMLRNATWTLSNFCRGKPQPS-FEQTRPALPALARL 252 (528)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCC-------HHHHHHHHHHHHHHHCSSSCCC-HHHHTTHHHHHHHH
T ss_pred HHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCC-------HHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHH
Confidence 99999999 788999999999999999999954433 2899999999999998654433 34458999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHH
Q 007104 216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (618)
Q Consensus 216 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 295 (618)
+.++++.++..++++|.+++...+.....+.+.|+++.|+.+|.++++.++..|+++|++++.+++...+.++..|+++.
T Consensus 253 L~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~ 332 (528)
T 4b8j_A 253 IHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPC 332 (528)
T ss_dssp TTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHH
Confidence 99999999999999999999866666678889999999999999999999999999999999988888888999999999
Q ss_pred HHHhhcCC-ChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC--CCcchhhHh
Q 007104 296 VIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD--MHNQAGIAH 372 (618)
Q Consensus 296 L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~l~~ 372 (618)
|+.+|.+. ++.++..|+++|+|++..++.....+.+.|+++.|+.+|.++++.++..|+++|+|++.. ......+.+
T Consensus 333 L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 412 (528)
T 4b8j_A 333 LLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVS 412 (528)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999998 899999999999999988888888888999999999999999999999999999999975 344566788
Q ss_pred cCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHH
Q 007104 373 NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNH 452 (618)
Q Consensus 373 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 452 (618)
.++++.|+.++.+.++.++..++.+|.+|+...+........+ ... ........+.+..
T Consensus 413 ~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~-~~~--------------------~~~~i~~~~~~~~ 471 (528)
T 4b8j_A 413 EGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGD-VNV--------------------FSQMIDEAEGLEK 471 (528)
T ss_dssp TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCS-CCH--------------------HHHHHHHTTHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccccc-ccH--------------------HHHHHHHCCcHHH
Confidence 8999999999999999999999999999985433211111000 000 0011123456777
Q ss_pred HHHHHhhCCHhHHHHHHHHHHhhcCCCc
Q 007104 453 LLYLMRVAEKGVQRRVALALAHLCSPDD 480 (618)
Q Consensus 453 L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 480 (618)
+..+..+++++++..|..+|.++...++
T Consensus 472 l~~L~~~~~~~v~~~a~~il~~~~~~e~ 499 (528)
T 4b8j_A 472 IENLQSHDNNEIYEKAVKILEAYWMDEE 499 (528)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHCC---
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence 8888899999999999999999875543
No 22
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=1.2e-32 Score=303.00 Aligned_cols=434 Identities=21% Similarity=0.238 Sum_probs=358.9
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhC-CCHHHHHHhhcCCCCCccccCCCcchhHHHHH
Q 007104 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (618)
Q Consensus 57 ~~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (618)
..++.++++|.+ ++..++..|+.+|.+++.+...+..+... |+++.|+.+|..+.. ++++..
T Consensus 150 g~ip~Lv~lL~~------~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d-----------~~vr~~ 212 (780)
T 2z6g_A 150 RAIPELTKLLND------EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND-----------VETARC 212 (780)
T ss_dssp HHHHHHHHHHHC------SCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCC-----------HHHHHH
T ss_pred CCHHHHHHHHCC------CCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCC-----------HHHHHH
Confidence 345566666653 36679999999999999987777777754 899999999986532 289999
Q ss_pred HHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHh
Q 007104 136 SAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (618)
Q Consensus 136 a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~l 215 (618)
|+++|.+|+..++++..+...|+++.|+.+|++.+. .++..|+++|.||+...+..+..+...|+++.|+.+
T Consensus 213 Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~--------~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~l 284 (780)
T 2z6g_A 213 TSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVD--------SVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 284 (780)
T ss_dssp HHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG
T ss_pred HHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHH
Confidence 999999999888889999999999999999988754 899999999999999888888888889999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCChhHHHHHHhcCCHH
Q 007104 216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS-AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (618)
Q Consensus 216 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 294 (618)
+.+++..++..++.+|.+++..+++.+..+.+.|+++.|+.++++.+. ..+..++.+|.+++.. +..+..++..|+++
T Consensus 285 L~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~ 363 (780)
T 2z6g_A 285 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQ 363 (780)
T ss_dssp GGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHH
T ss_pred HhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHH
Confidence 999999999999999999998778899999999999999999997654 4566889999999864 56678888999999
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-CcchhhHhc
Q 007104 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM-HNQAGIAHN 373 (618)
Q Consensus 295 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~l~~~ 373 (618)
.|+.++.+.+..++..++++|.+++...... ....++++.|+.+|.+.++.++..++++|++|+.+. .++..+.+.
T Consensus 364 ~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~ 440 (780)
T 2z6g_A 364 ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 440 (780)
T ss_dssp HHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTT
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC
Confidence 9999999999999999999999998654331 112457899999999999999999999999999865 456678888
Q ss_pred CCHHHHHHhhcC-CC-hhHHHHHHHHHHHhhcCCcc----hhHHHhhcccccccccchhhh--hHHHHHHHHHHHH----
Q 007104 374 GGLVPLLKLLDS-KN-GSLQHNAAFALYGLADNEDN----VADFIRVGGVQKLQDGEFIVQ--ATKDCVAKTLKRL---- 441 (618)
Q Consensus 374 ~~l~~L~~ll~~-~~-~~v~~~a~~~L~~l~~~~~~----~~~l~~~~~~~~L~~~~~~~~--~~~~~~~~~~~~~---- 441 (618)
++++.|++++.+ .+ ..++..|+++|+||+..... +..+...++++.|.+...... .++......+.++
T Consensus 441 g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~ 520 (780)
T 2z6g_A 441 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 520 (780)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH
T ss_pred CCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH
Confidence 999999999976 33 48999999999999864332 356778888888876443221 2333333333333
Q ss_pred ---HHHHhhhhHHHHHHHHhhCC----------------------HhHHHHHHHHHHhhcCCCccccceecCCchHHHHH
Q 007104 442 ---EEKIHGRVLNHLLYLMRVAE----------------------KGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLG 496 (618)
Q Consensus 442 ---~~~~~~~~l~~L~~ll~~~~----------------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ 496 (618)
......++++.|+.+|.+.+ .+++..++.+|.+++.++.++..+.+.|+++.|+.
T Consensus 521 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~ 600 (780)
T 2z6g_A 521 ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQ 600 (780)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHH
Confidence 23457789999999998754 34677888999999988778888889999999999
Q ss_pred HhcCCChhhhhhHHHHHHHhhhh
Q 007104 497 LLGSTNPKQQLDGAVALFKLANK 519 (618)
Q Consensus 497 ll~~~~~~v~~~a~~~L~~L~~~ 519 (618)
++.++++.++..|+.+|.+|+.+
T Consensus 601 lL~~~~~~v~~~a~~aL~~L~~~ 623 (780)
T 2z6g_A 601 LLYSPIENIQRVAAGVLCELAQD 623 (780)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHTS
T ss_pred HHcCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999854
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=1.9e-32 Score=290.90 Aligned_cols=364 Identities=17% Similarity=0.244 Sum_probs=311.9
Q ss_pred hHHHHHHHHHHHHHhcc-ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHH
Q 007104 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLI 153 (618)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~ 153 (618)
+..++..|+++|.+++. +++.+..++..|++|.|+.+|.+++. .++..|+++|++|+ .+++.+..+
T Consensus 144 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~------------~vr~~A~~aL~~l~~~~~~~~~~~ 211 (530)
T 1wa5_B 144 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV------------EVKEQAIWALGNVAGDSTDYRDYV 211 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCH------------HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCH------------HHHHHHHHHHHHHhCCCccchHHH
Confidence 56789999999999999 67888899999999999999997665 99999999999999 668899999
Q ss_pred HhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 007104 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233 (618)
Q Consensus 154 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 233 (618)
...|+++.|+.+|.+.+. +++..++++|.+|+....+........++++.|+.++.++++.++..++++|.+
T Consensus 212 ~~~~~l~~L~~ll~~~~~--------~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~ 283 (530)
T 1wa5_B 212 LQCNAMEPILGLFNSNKP--------SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISY 283 (530)
T ss_dssp HHTTCHHHHHHGGGSCCH--------HHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHhccCCH--------HHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999999999988443 899999999999998653333445668999999999999999999999999999
Q ss_pred hhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHH
Q 007104 234 LAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL 313 (618)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~ 313 (618)
++...+.....+.+.|+++.|+.++.++++.++..|+++|++++.+++...+.++..|+++.|+.+|.++++.++..|++
T Consensus 284 L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~ 363 (530)
T 1wa5_B 284 LSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 363 (530)
T ss_dssp HHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHH
Confidence 99876777888888999999999999999999999999999999888888888888999999999999999999999999
Q ss_pred HHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC----CcchhhHhcCCHHHHHHhhcCCChh
Q 007104 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM----HNQAGIAHNGGLVPLLKLLDSKNGS 389 (618)
Q Consensus 314 ~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~----~~~~~l~~~~~l~~L~~ll~~~~~~ 389 (618)
+|++++..++.....+.+.|+++.|+.+|.++++.++..++++|++++... .....+.+.++++.|+.++.+.++.
T Consensus 364 aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~ 443 (530)
T 1wa5_B 364 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNR 443 (530)
T ss_dssp HHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHH
Confidence 999999877887788889999999999999999999999999999998743 3445678889999999999999999
Q ss_pred HHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHH
Q 007104 390 LQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVA 469 (618)
Q Consensus 390 v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~ 469 (618)
++..++++|.+++...+..... ..+.... ........+.++.|..++.++++.++..|.
T Consensus 444 v~~~al~aL~~l~~~~~~~~~~-~~~~~~~--------------------~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~ 502 (530)
T 1wa5_B 444 IIEVTLDALENILKMGEADKEA-RGLNINE--------------------NADFIEKAGGMEKIFNCQQNENDKIYEKAY 502 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HTCSSCH--------------------HHHHHHHTTHHHHHHGGGGCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhc-ccccccH--------------------HHHHHHHcCcHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999998543321111 0000000 001122456788888999999999999999
Q ss_pred HHHHhhcCCCc
Q 007104 470 LALAHLCSPDD 480 (618)
Q Consensus 470 ~~L~~l~~~~~ 480 (618)
.+|.++...++
T Consensus 503 ~il~~~~~~~~ 513 (530)
T 1wa5_B 503 KIIETYFGEEE 513 (530)
T ss_dssp HHHHHHSSSCC
T ss_pred HHHHHHCCccc
Confidence 99999875544
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=6.3e-32 Score=281.61 Aligned_cols=377 Identities=19% Similarity=0.246 Sum_probs=315.0
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHH
Q 007104 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (618)
Q Consensus 57 ~~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (618)
..++.+++.|.+. .+..++..|+++|.+++. +++....+++.|++|.|+++|++++. +++..
T Consensus 64 ~~i~~L~~~L~~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~------------~vr~~ 126 (450)
T 2jdq_A 64 GVVARFVEFLKRK-----ENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE------------DVQEQ 126 (450)
T ss_dssp THHHHHHHHHTCT-----TCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHH
T ss_pred CcHHHHHHHHCCC-----CCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCH------------HHHHH
Confidence 3466666666543 256789999999999998 67888888899999999999998765 99999
Q ss_pred HHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcC-chhhHHHHhcCChHHHH
Q 007104 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN-SSIKTRVRMEGGIPPLV 213 (618)
Q Consensus 136 a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~i~~L~ 213 (618)
|+++|++++ .+++.+..+...|+++.|+.++++..+ .+++..++++|.+++... +.....+. .++++.|+
T Consensus 127 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~-------~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~ 198 (450)
T 2jdq_A 127 AVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNR-------LTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLS 198 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCC-------HHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCC-------HHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHH
Confidence 999999999 778899999999999999999986322 299999999999999755 33333233 78999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCH
Q 007104 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (618)
Q Consensus 214 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l 293 (618)
.++.++++.++..++++|.+++...++....+.+.|+++.|+.++.++++.++..|+++|++++...+...+.+...|++
T Consensus 199 ~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l 278 (450)
T 2jdq_A 199 WLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSAL 278 (450)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHH
T ss_pred HHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccH
Confidence 99999999999999999999998666777888889999999999999999999999999999999888877888889999
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC-C-CcchhhH
Q 007104 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD-M-HNQAGIA 371 (618)
Q Consensus 294 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~-~~~~~l~ 371 (618)
+.|+.++.++++.++..++++|++++.+++.....+.+.++++.|+.+|.++++.++..++++|+|++.+ . .....+.
T Consensus 279 ~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~ 358 (450)
T 2jdq_A 279 QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLV 358 (450)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999999999999999987788888888899999999999999999999999999999874 2 3345577
Q ss_pred hcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHH
Q 007104 372 HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN 451 (618)
Q Consensus 372 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 451 (618)
+.++++.|++++.+++++++..++++|.+++...+..... ..+.+..+ .......+.++
T Consensus 359 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~-~~~~~~~~--------------------~~~l~~~g~~~ 417 (450)
T 2jdq_A 359 ELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKR-NGTGINPY--------------------CALIEEAYGLD 417 (450)
T ss_dssp HHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHH-SCSCCCHH--------------------HHHHHHHHCHH
T ss_pred HCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhc-cccchhHH--------------------HHHHHHcCcHH
Confidence 8899999999999999999999999999998644322111 00111110 01112445677
Q ss_pred HHHHHHhhCCHhHHHHHHHHHHhhcCCC
Q 007104 452 HLLYLMRVAEKGVQRRVALALAHLCSPD 479 (618)
Q Consensus 452 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 479 (618)
.|..++.++++.++..|..+|.++-..+
T Consensus 418 ~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 445 (450)
T 2jdq_A 418 KIEFLQSHENQEIYQKAFDLIEHYFGTE 445 (450)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 8888899999999999999999986544
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=4.4e-31 Score=260.30 Aligned_cols=283 Identities=20% Similarity=0.269 Sum_probs=244.4
Q ss_pred CCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccC---CCCcccchHHHHHHHHHHHHhhhcCchhh
Q 007104 124 NLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMD---SNCSRAVNSVIRRAADAITNLAHENSSIK 200 (618)
Q Consensus 124 ~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~---~~~~~~~~~~~~~a~~~L~~L~~~~~~~~ 200 (618)
.|.|++|.+. +|+++|+|++.++++|..+++.|+++.|+.+|..... ........++++.|+++|.||+..++..+
T Consensus 41 ~~~~~~~~~~-~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k 119 (354)
T 3nmw_A 41 MPAPVEHQIC-PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANK 119 (354)
T ss_dssp CCCGGGGTHH-HHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred CCCcchHHHH-HHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 4777777776 8999999999889999999999999999999964310 00000112799999999999999887788
Q ss_pred HHHHhc-CChHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CcccHHHHHhcCCHHHHHHh-hcCCCHHHHHHHHHHHHHHh
Q 007104 201 TRVRME-GGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLV 277 (618)
Q Consensus 201 ~~~~~~-~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~l-l~~~~~~v~~~a~~~L~~l~ 277 (618)
..+... |++|.|+.+|.+++++++..|+++|.+|+.. ++.++..+.+.|+++.|+++ ++++++++++.|+++|+||+
T Consensus 120 ~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs 199 (354)
T 3nmw_A 120 ATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS 199 (354)
T ss_dssp HHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 777654 5599999999999999999999999999974 56788999999999999997 46778999999999999999
Q ss_pred cCChhHHHHHH-hcCCHHHHHHhhcCCCh----hHHHHHHHHHHHHhc---CChhhHHHHHhcCChHHHHHhhCCCCHHH
Q 007104 278 HSSPNIKKEVL-AAGALQPVIGLLSSCCS----ESQREAALLLGQFAA---TDSDCKVHIVQRGAVRPLIEMLQSPDVQL 349 (618)
Q Consensus 278 ~~~~~~~~~~~-~~~~l~~L~~ll~~~~~----~~~~~a~~~L~~l~~---~~~~~~~~l~~~~~~~~L~~lL~~~~~~v 349 (618)
..+++.+..+. ..|+++.|+.+|.+.+. ++++.++++|.|++. .+++.+..+.+.|+++.|+.+|++++..+
T Consensus 200 ~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 279 (354)
T 3nmw_A 200 AHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTI 279 (354)
T ss_dssp TTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHH
T ss_pred ccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHH
Confidence 86667677777 78999999999987654 489999999999986 67888999999999999999999999999
Q ss_pred HHHHHHHHHHhhc-CCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcc
Q 007104 350 REMSAFALGRLAQ-DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 407 (618)
Q Consensus 350 ~~~a~~~L~~l~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 407 (618)
++.|+++|+||+. +.+++..+.+.|++++|++++.+++..+++.|+++|.||+.+.+.
T Consensus 280 ~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 280 VSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999996 456677889999999999999999999999999999999977544
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=2.4e-30 Score=255.06 Aligned_cols=281 Identities=21% Similarity=0.208 Sum_probs=241.9
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHHHhC
Q 007104 78 AAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDN 156 (618)
Q Consensus 78 ~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~ 156 (618)
..+..|+++|.+++.++++|..+++.|+++.|+.+|..+... .........+.++..|+++|.+|+ .+++++..+...
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~-~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEM-YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHH-HTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhccccc-ccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 345689999999999999999999999999999999632100 000001123589999999999999 666788877655
Q ss_pred -CcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhc-CchhhHHHHhcCChHHHHHhh-cCCCHHHHHHHHHHHHH
Q 007104 157 -GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALRT 233 (618)
Q Consensus 157 -g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~ 233 (618)
|++|.|+.+|++.+. ++++.++++|.||+.. ++.++..+.+.|+++.|+++| +++++++++.++.+|++
T Consensus 126 ~GaIp~LV~LL~s~~~--------~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~n 197 (354)
T 3nmw_A 126 KGCMRALVAQLKSESE--------DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWN 197 (354)
T ss_dssp HHHHHHHHHGGGCSCH--------HHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHCCCCH--------HHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 559999999997655 9999999999999985 567888999999999999975 66789999999999999
Q ss_pred hhcCCcccHHHHH-hcCCHHHHHHhhcCCCH----HHHHHHHHHHHHHhc---CChhHHHHHHhcCCHHHHHHhhcCCCh
Q 007104 234 LAFKNDENKNQIV-ECNALPTLILMLRSEDS----AIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVIGLLSSCCS 305 (618)
Q Consensus 234 l~~~~~~~~~~~~-~~~~~~~L~~ll~~~~~----~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~L~~ll~~~~~ 305 (618)
|+...++++..+. ..|+++.|+.+|+++++ +++..|+++|+|++. .+++.++.+.+.|+++.|+.+|.+.+.
T Consensus 198 Ls~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 277 (354)
T 3nmw_A 198 LSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSL 277 (354)
T ss_dssp HHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCH
T ss_pred HHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCCh
Confidence 9986677787777 78999999999987654 599999999999987 678888999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcc
Q 007104 306 ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ 367 (618)
Q Consensus 306 ~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 367 (618)
++++.|+++|+|++..+++.+..+.+.|+++.|+.+|.+++..+++.|+++|.||+.+.+.+
T Consensus 278 ~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 278 TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999778899999999999999999999999999999999999999876554
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=2.8e-26 Score=218.86 Aligned_cols=243 Identities=31% Similarity=0.380 Sum_probs=228.2
Q ss_pred CCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHH
Q 007104 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (618)
Q Consensus 104 g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~ 182 (618)
|.+|.|+++|++++. +++..|+++|.+++ .+++.+..+.+.|+++.|+.+|++.+. +++
T Consensus 2 ~~i~~L~~~L~~~~~------------~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~--------~v~ 61 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDS------------ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDS--------EVQ 61 (252)
T ss_dssp CHHHHHHHHTTCSCH------------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHH
T ss_pred CcHHHHHHHHcCCCH------------HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCH--------HHH
Confidence 679999999998776 99999999999999 777799999999999999999998765 999
Q ss_pred HHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCC
Q 007104 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (618)
Q Consensus 183 ~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~ 262 (618)
..++++|.+++..++..+..+...|+++.++.+++++++.++..++++|.+++..++..+..+.+.|+++.|++++++++
T Consensus 62 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~ 141 (252)
T 4hxt_A 62 KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD 141 (252)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC
Confidence 99999999999987999999999999999999999999999999999999999778889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhh
Q 007104 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (618)
Q Consensus 263 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL 342 (618)
+.++..++++|++++..++.....+...|+++.|+.++.+.++.++..++++|++++..++.....+.+.|+++.|+.++
T Consensus 142 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll 221 (252)
T 4hxt_A 142 SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLL 221 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999998888888899999999999999999999999999999999987888888999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCc
Q 007104 343 QSPDVQLREMSAFALGRLAQDMHN 366 (618)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~~~~~ 366 (618)
.++++.++..|+++|+||+.....
T Consensus 222 ~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 222 TSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp GCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred CCCcHHHHHHHHHHHHHHHcCCCc
Confidence 999999999999999999986544
No 28
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=1.9e-25 Score=213.16 Aligned_cols=243 Identities=30% Similarity=0.386 Sum_probs=225.3
Q ss_pred CcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007104 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (618)
Q Consensus 157 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 236 (618)
|.++.|+.+|++.+. +++..|+++|.+++..++..+..+.+.|+++.|+.+++++++.++..++++|.+++.
T Consensus 2 ~~i~~L~~~L~~~~~--------~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 73 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDS--------ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 73 (252)
T ss_dssp CHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHcCCCH--------HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 678999999998764 999999999999999888788889999999999999999999999999999999998
Q ss_pred CCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHH
Q 007104 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 316 (618)
Q Consensus 237 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~ 316 (618)
.+++.+..+.+.|+++.|+.++++++++++..|+++|++++..++..+..+...|+++.|+.++.+.++.++..++++|+
T Consensus 74 ~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~ 153 (252)
T 4hxt_A 74 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALA 153 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999888888899999999999999999999999999999999
Q ss_pred HHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC-cchhhHhcCCHHHHHHhhcCCChhHHHHHH
Q 007104 317 QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH-NQAGIAHNGGLVPLLKLLDSKNGSLQHNAA 395 (618)
Q Consensus 317 ~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 395 (618)
+++..++.....+.+.|+++.|+.++.++++.++..++++|++++.+.+ ....+.+.++++.|++++.++++.++..|+
T Consensus 154 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 233 (252)
T 4hxt_A 154 NIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQ 233 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHH
Confidence 9998888888889999999999999999999999999999999998544 355678889999999999999999999999
Q ss_pred HHHHHhhcCCcc
Q 007104 396 FALYGLADNEDN 407 (618)
Q Consensus 396 ~~L~~l~~~~~~ 407 (618)
++|.||+.....
T Consensus 234 ~~L~~l~~~~~~ 245 (252)
T 4hxt_A 234 RALENIKSGGWL 245 (252)
T ss_dssp HHHHHHHHTCBC
T ss_pred HHHHHHHcCCCc
Confidence 999999866543
No 29
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=2.4e-25 Score=212.32 Aligned_cols=238 Identities=24% Similarity=0.351 Sum_probs=220.5
Q ss_pred CCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHH
Q 007104 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (618)
Q Consensus 104 g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~ 182 (618)
...+.++..|++++. +++..|+++|.++. .+++.+..+.+.|+++.|+.+|++.+. +++
T Consensus 12 ~~~~~~~~~L~s~~~------------~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~--------~v~ 71 (252)
T 4db8_A 12 SELPQMTQQLNSDDM------------QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNE--------QIL 71 (252)
T ss_dssp CSHHHHHHHHHSSCS------------SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCH--------HHH
T ss_pred chHHHHHHHHcCCCH------------HHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCH--------HHH
Confidence 457889999999888 89999999998766 677888899999999999999998764 999
Q ss_pred HHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccH-HHHHhcCCHHHHHHhhcCC
Q 007104 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK-NQIVECNALPTLILMLRSE 261 (618)
Q Consensus 183 ~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~~L~~ll~~~ 261 (618)
..++++|.+++.+++..+..+...|+++.|+.+++++++.++..++++|.+++.. +..+ ..+.+.|+++.|+.+++++
T Consensus 72 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~lL~~~ 150 (252)
T 4db8_A 72 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSP 150 (252)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHGGGCS
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CchHHHHHHHCCCHHHHHHHHhCC
Confidence 9999999999998889999999999999999999999999999999999999984 4444 8889999999999999999
Q ss_pred CHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHh
Q 007104 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM 341 (618)
Q Consensus 262 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~l 341 (618)
++.++..|+++|++++..++.....+...|+++.|+.++.++++.++..++++|++++..++.....+.+.|+++.|+.+
T Consensus 151 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 230 (252)
T 4db8_A 151 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 230 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHH
Confidence 99999999999999999888888888999999999999999999999999999999998888888889999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhc
Q 007104 342 LQSPDVQLREMSAFALGRLAQ 362 (618)
Q Consensus 342 L~~~~~~v~~~a~~~L~~l~~ 362 (618)
+.++++.++..|+++|.||+.
T Consensus 231 l~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 231 QSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp TTCSSSHHHHTHHHHHHTTC-
T ss_pred hCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999975
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=7.4e-25 Score=208.95 Aligned_cols=239 Identities=24% Similarity=0.340 Sum_probs=218.4
Q ss_pred CcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007104 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (618)
Q Consensus 157 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 236 (618)
...+.+...|.+.+. +++..|+++|.++...++..+..+.+.|+++.|+.+++++++.++..++++|.+++.
T Consensus 12 ~~~~~~~~~L~s~~~--------~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 83 (252)
T 4db8_A 12 SELPQMTQQLNSDDM--------QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 83 (252)
T ss_dssp CSHHHHHHHHHSSCS--------SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHcCCCH--------HHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 457889999998877 899999999988766566777788899999999999999999999999999999998
Q ss_pred CCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHH
Q 007104 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 316 (618)
Q Consensus 237 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~ 316 (618)
++++++..+.+.|+++.|+.+++++++.++..|+++|++++...+.....+...|+++.|+.++.+.++.++..++++|+
T Consensus 84 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~ 163 (252)
T 4db8_A 84 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999998887665588889999999999999999999999999999
Q ss_pred HHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-CcchhhHhcCCHHHHHHhhcCCChhHHHHHH
Q 007104 317 QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM-HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAA 395 (618)
Q Consensus 317 ~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 395 (618)
+++..++.....+.+.|+++.|+.+|.++++.++..++++|+|++... ..+..+.+.++++.|++++.+.++.++..|+
T Consensus 164 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~ 243 (252)
T 4db8_A 164 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQ 243 (252)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHH
T ss_pred HHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHH
Confidence 999888888888899999999999999999999999999999999754 3456678889999999999999999999999
Q ss_pred HHHHHhhc
Q 007104 396 FALYGLAD 403 (618)
Q Consensus 396 ~~L~~l~~ 403 (618)
++|.||+.
T Consensus 244 ~~L~~l~~ 251 (252)
T 4db8_A 244 EALEKLQS 251 (252)
T ss_dssp HHHHTTC-
T ss_pred HHHHHHhc
Confidence 99999974
No 31
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.6e-24 Score=226.94 Aligned_cols=387 Identities=16% Similarity=0.135 Sum_probs=295.9
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhh-HHHHHhC
Q 007104 78 AAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEH-QQLIVDN 156 (618)
Q Consensus 78 ~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~ 156 (618)
.....+++.|...|.++..|..+ ..++++.|.++++. . +++..|+-+|.++...+.. ...+.
T Consensus 271 ~~~~a~L~lLsaACi~~~cR~~I-~~~~~~~L~~~l~~--~------------~ir~lAavvL~KL~~~~~~~~~si~-- 333 (778)
T 3opb_A 271 QFTKELLRLLSSACIDETMRTYI-TENYLQLLERSLNV--E------------DVQIYSALVLVKTWSFTKLTCINLK-- 333 (778)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHH-HHHHHHHHHHHTTS--G------------GGHHHHHHHHHHHTGGGTCTTCCHH--
T ss_pred HHHHHHHHHHHHHhCCcHHHHHH-HHhHHHHHHHHhcc--H------------HHHHHHHHHHHHHhcCCCCCcCcHH--
Confidence 34455566666666677776655 67778999999864 3 7888999999998833221 11111
Q ss_pred CcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhc-CChHHHHHhhcC-CCHHHHHHHHHHHHHh
Q 007104 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME-GGIPPLVELLEF-TDTKVQRAAAGALRTL 234 (618)
Q Consensus 157 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~-~~i~~L~~ll~~-~~~~v~~~a~~~L~~l 234 (618)
...+.+.+.|.+... +.+..|+..|..++. ++..|..++.. ++++.|+.+++. .+..+...++.+|.|+
T Consensus 334 ~La~~~~~~L~~~~~--------~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NL 404 (778)
T 3opb_A 334 QLSEIFINAISRRIV--------PKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANL 404 (778)
T ss_dssp HHHHHHHHHTTTCCH--------HHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCc--------cHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Confidence 134556666665433 558999999999998 77778877774 569999999995 6778999999999999
Q ss_pred hcCCcc--------------------------------------cHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 007104 235 AFKNDE--------------------------------------NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL 276 (618)
Q Consensus 235 ~~~~~~--------------------------------------~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l 276 (618)
+...+. ++..+.+.|+++.|+.+++++++.++..++++|.++
T Consensus 405 t~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nL 484 (778)
T 3opb_A 405 STLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNI 484 (778)
T ss_dssp TCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHH
T ss_pred cCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 974331 345567889999999999999999999999999999
Q ss_pred hcCChhHHHHHHhcCCHHHHHHhhcCCChh---HHHHHHHHHHHHhcCChhhHHHHHh---cCChHHHHHhhCC-CCH--
Q 007104 277 VHSSPNIKKEVLAAGALQPVIGLLSSCCSE---SQREAALLLGQFAATDSDCKVHIVQ---RGAVRPLIEMLQS-PDV-- 347 (618)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~---~~~~a~~~L~~l~~~~~~~~~~l~~---~~~~~~L~~lL~~-~~~-- 347 (618)
+.. +..+..++++|+++.|+.++.+.... .+..|+.+|.+++....... .+.. .++++.|+.+|.. +..
T Consensus 485 S~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~-~f~~~~~~~aI~pLv~LL~~~~~~~~ 562 (778)
T 3opb_A 485 TRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL-IFKKYSALNAIPFLFELLPRSTPVDD 562 (778)
T ss_dssp HTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH-HSSSSCSTTHHHHHHHTSCCSSSCSS
T ss_pred cCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH-HcCCCccccchHHHHHHcCCCCCccc
Confidence 765 78889999999999999999887544 78999999999984332221 1111 3889999999983 211
Q ss_pred -----------HHHHHHHHHHHHhhcCCCc-----chhhHhc-CCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcch-h
Q 007104 348 -----------QLREMSAFALGRLAQDMHN-----QAGIAHN-GGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV-A 409 (618)
Q Consensus 348 -----------~v~~~a~~~L~~l~~~~~~-----~~~l~~~-~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~ 409 (618)
.-+..|+.+|.||+..+.+ +..++.. ++++.|.+++.+.+..++.+|+++++||+.+++.. .
T Consensus 563 ~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~ 642 (778)
T 3opb_A 563 NPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAA 642 (778)
T ss_dssp CC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGG
T ss_pred ccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHH
Confidence 2377999999999997633 5667774 89999999999999999999999999999877764 3
Q ss_pred HHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcC-CCccccceecC
Q 007104 410 DFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFIDG 488 (618)
Q Consensus 410 ~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~ 488 (618)
.++..+. + ...+-++.|+.+++..+.++|.+|+++|.+++. .+.....+.+.
T Consensus 643 k~~~~~~-~--------------------------~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~ 695 (778)
T 3opb_A 643 KFFNLEN-P--------------------------QSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTK 695 (778)
T ss_dssp GTSCCSS-H--------------------------HHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTC
T ss_pred HHHhhcC-c--------------------------hhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHc
Confidence 4433220 0 011246789999999999999999999999964 44444555555
Q ss_pred -CchHHHHHHhcC--CChhhhhhHHHHHHHhhhh
Q 007104 489 -GGLELLLGLLGS--TNPKQQLDGAVALFKLANK 519 (618)
Q Consensus 489 -~~l~~L~~ll~~--~~~~v~~~a~~~L~~L~~~ 519 (618)
++++.|+.++.+ ++++++..++.++.||+..
T Consensus 696 ~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 696 KELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 899999999998 8999999999999999974
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.1e-22 Score=213.14 Aligned_cols=381 Identities=15% Similarity=0.112 Sum_probs=291.6
Q ss_pred HHHHHHHHHhcc-ChhhHH-HHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCc
Q 007104 81 KRATHVLAELAK-NEEVVN-WIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGA 158 (618)
Q Consensus 81 ~~a~~~L~~l~~-~~~~~~-~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~ 158 (618)
..++.++..+.- .|+.+. .|...|.++.|.+.+.+... ..+...+++.|...|.+..+|..+. .++
T Consensus 230 ~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~-----------~~~~~a~L~lLsaACi~~~cR~~I~-~~~ 297 (778)
T 3opb_A 230 SIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQD-----------LQFTKELLRLLSSACIDETMRTYIT-ENY 297 (778)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCC-----------HHHHHHHHHHHHHHCCSHHHHHHHH-HHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccc-----------hHHHHHHHHHHHHHhCCcHHHHHHH-HhH
Confidence 345556666655 455444 55578899999998865433 2677788888888889989988884 567
Q ss_pred HHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 007104 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN 238 (618)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 238 (618)
++.|..+++.. .++..|+-+|..+..........+. ...+.+.+.+.+++..-+..|++.|..++. .
T Consensus 298 ~~~L~~~l~~~----------~ir~lAavvL~KL~~~~~~~~~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~ 364 (778)
T 3opb_A 298 LQLLERSLNVE----------DVQIYSALVLVKTWSFTKLTCINLK--QLSEIFINAISRRIVPKVEMSVEALAYLSL-K 364 (778)
T ss_dssp HHHHHHHTTSG----------GGHHHHHHHHHHHTGGGTCTTCCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-S
T ss_pred HHHHHHHhccH----------HHHHHHHHHHHHHhcCCCCCcCcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhC-C
Confidence 79999888652 6778888888888764332211121 245777888877776669999999999997 6
Q ss_pred cccHHHHHh-cCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChh----------------------------------
Q 007104 239 DENKNQIVE-CNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN---------------------------------- 282 (618)
Q Consensus 239 ~~~~~~~~~-~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~---------------------------------- 282 (618)
++.++.+.+ .++++.|+.+++. .+..+.+.++.+|.|++...+.
T Consensus 365 ~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~ 444 (778)
T 3opb_A 365 ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKED 444 (778)
T ss_dssp SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHH
Confidence 777777765 5779999999995 7888999999999999874221
Q ss_pred ----HHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHH---HHHHHHH
Q 007104 283 ----IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ---LREMSAF 355 (618)
Q Consensus 283 ----~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~---v~~~a~~ 355 (618)
++..+.+.|+++.|+.++.+.++.++..++++|.|++ .++.++..+++.|+++.|+.+|.+.... ++..|+.
T Consensus 445 v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS-~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ 523 (778)
T 3opb_A 445 ILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNIT-RSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCR 523 (778)
T ss_dssp HHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHH-TSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHH
Confidence 3456668899999999999999999999999999997 5688999999999999999999986544 8999999
Q ss_pred HHHHhhcCCCcchhhH---hcCCHHHHHHhhcC-CCh-------------hHHHHHHHHHHHhhcCCcc-----hhHHHh
Q 007104 356 ALGRLAQDMHNQAGIA---HNGGLVPLLKLLDS-KNG-------------SLQHNAAFALYGLADNEDN-----VADFIR 413 (618)
Q Consensus 356 ~L~~l~~~~~~~~~l~---~~~~l~~L~~ll~~-~~~-------------~v~~~a~~~L~~l~~~~~~-----~~~l~~ 413 (618)
+|.+|+....+...+. ..+++++|+.+|.. +.. .-+..|+.+|.||+..+.+ +..+++
T Consensus 524 ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~ 603 (778)
T 3opb_A 524 ALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVS 603 (778)
T ss_dssp HHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHH
Confidence 9999986544332221 13789999999983 211 1267999999999987643 344443
Q ss_pred hcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccc-cceecCC---
Q 007104 414 VGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR-TIFIDGG--- 489 (618)
Q Consensus 414 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~--- 489 (618)
. .++++.|..+|.+++..+|..|+++++|++.+++.. ..+...+
T Consensus 604 ~--------------------------------~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~ 651 (778)
T 3opb_A 604 T--------------------------------KVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ 651 (778)
T ss_dssp S--------------------------------HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHH
T ss_pred h--------------------------------cCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCch
Confidence 2 246778999999999999999999999999888753 2332222
Q ss_pred ---chHHHHHHhcCCChhhhhhHHHHHHHhhhh
Q 007104 490 ---GLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (618)
Q Consensus 490 ---~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (618)
.++.|+.++.+++.++|.+|+++|.+++..
T Consensus 652 ~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 652 SLRNFNILVKLLQLSDVESQRAVAAIFANIATT 684 (778)
T ss_dssp HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence 388999999999999999999999999754
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.90 E-value=1.9e-22 Score=186.35 Aligned_cols=199 Identities=26% Similarity=0.372 Sum_probs=184.9
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHH
Q 007104 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (618)
Q Consensus 205 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 284 (618)
..+..+.+..++.++++.++..|+++|.+++..+++.+..+.+.|+++.|+.+|+++++.++..|+++|++++..++..+
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 46788999999999999999999999999998788899999999999999999999999999999999999998888888
Q ss_pred HHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC-
Q 007104 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD- 363 (618)
Q Consensus 285 ~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~- 363 (618)
..+.+.|+++.|+.+|.++++.++..++++|+|++..++.....+.+.|+++.|+.++.++++.++..++++|.|++.+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999988888888889999999999999999999999999999999987
Q ss_pred CCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhc
Q 007104 364 MHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 403 (618)
Q Consensus 364 ~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 403 (618)
...+..+.+.|+++.|++++.+.++.+++.|+++|.+|+.
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 4556678888999999999999999999999999999975
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.90 E-value=3.5e-22 Score=184.56 Aligned_cols=200 Identities=24% Similarity=0.336 Sum_probs=186.8
Q ss_pred hCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 007104 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (618)
Q Consensus 155 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 234 (618)
..+..+.|..+|++.+. +++..|+++|.+++..++..+..+.+.|+++.|+.++.++++.++..|+++|.++
T Consensus 10 ~~~~~~~l~~LL~s~~~--------~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 81 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQ--------QELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 81 (210)
T ss_dssp ---CHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHhcCCCH--------HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 45788999999988765 9999999999999988888888999999999999999999999999999999999
Q ss_pred hcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHH
Q 007104 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (618)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~ 314 (618)
+.+++..+..+.+.|+++.|+.+|+++++.++..|+++|++++..++.....+.+.|+++.|+.++.+++.+++..++++
T Consensus 82 ~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a 161 (210)
T 4db6_A 82 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161 (210)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 98788899999999999999999999999999999999999998888888888999999999999999999999999999
Q ss_pred HHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 007104 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (618)
Q Consensus 315 L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~ 362 (618)
|.|++..++..+..+.+.|+++.|+.++.++++.+++.|+++|.+|+.
T Consensus 162 L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 162 LSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 999998878888899999999999999999999999999999999985
No 35
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.89 E-value=1.5e-21 Score=187.02 Aligned_cols=245 Identities=22% Similarity=0.224 Sum_probs=198.3
Q ss_pred HHHHHHHHHHhhccccc------hHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHH-hhcCCCCCccccCCCcc
Q 007104 56 LSEVSAQVNVLNTTFSW------LEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVK-HLQAPPTSEADRNLKPF 128 (618)
Q Consensus 56 ~~~v~~l~~~l~~~~~~------~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~-lL~~~~~~~~~~~~~~~ 128 (618)
...+...+++|.+.... .+.+.+.+..|+..|.+++.+.++...+.+.|++|.|+. +|.+++.
T Consensus 27 ~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~---------- 96 (296)
T 1xqr_A 27 VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAA---------- 96 (296)
T ss_dssp HHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSH----------
T ss_pred HHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCH----------
Confidence 45556677777664110 134556789999999999999889999999999999999 9988766
Q ss_pred hhHHHHHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcC
Q 007104 129 EHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207 (618)
Q Consensus 129 ~~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~ 207 (618)
.++..|+|+|++++ +++.++..+++.|+++.|+.+|+...+. .+++.|+|+|+|++.+++.....+...|
T Consensus 97 --~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~-------~v~~~A~~ALsnl~~~~~~~~~~~~~~g 167 (296)
T 1xqr_A 97 --GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACD-------TVRVKALFAISCLVREQEAGLLQFLRLD 167 (296)
T ss_dssp --HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCH-------HHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCH-------HHHHHHHHHHHHHHcCCcHHHHHHHHCC
Confidence 99999999999999 8899999999999999999999974321 8999999999999998888777888899
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHH
Q 007104 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (618)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 287 (618)
+++.|+.+|++++..++..|+++|.+++.++++.+..+++.|+++.|+.+|.++++.++..++++|++++...+......
T Consensus 168 gi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~ 247 (296)
T 1xqr_A 168 GFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVREC 247 (296)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHH
Confidence 99999999999999999999999999998888899999999999999999999999999999999999988855443332
Q ss_pred Hhc-CCH-HH---HHHhhcCC--ChhHHHHHHHHHHHHh
Q 007104 288 LAA-GAL-QP---VIGLLSSC--CSESQREAALLLGQFA 319 (618)
Q Consensus 288 ~~~-~~l-~~---L~~ll~~~--~~~~~~~a~~~L~~l~ 319 (618)
... ..+ .. -++-++.. +.+..+.+..++.++.
T Consensus 248 ~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 248 REPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred hccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence 221 112 11 12223322 2455556666666665
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.87 E-value=1e-20 Score=181.27 Aligned_cols=224 Identities=16% Similarity=0.139 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHH-HHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCCh
Q 007104 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVN-LLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (618)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~-lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i 209 (618)
+-+..|+..|.+++.+.++...+...|+++.|+. +|++.+. +++..|+++|++++.+++..+..+...|++
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~--------~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l 126 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAA--------GLRWRAAQLIGTCSQNVAAIQEQVLGLGAL 126 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHhCCHHHHHHHHHCCCH
Confidence 6788999999999988889999999999999999 9987655 999999999999999999999999999999
Q ss_pred HHHHHhhcC-CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHH
Q 007104 210 PPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (618)
Q Consensus 210 ~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (618)
+.|+.+|++ ++..++..|+|+|.+++.+++...+.+.+.|+++.|+.+|++++..++..|+|+|++++.++++.+..++
T Consensus 127 ~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv 206 (296)
T 1xqr_A 127 RKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLC 206 (296)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 999999986 5789999999999999987778888899999999999999999999999999999999998888899999
Q ss_pred hcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhc-CChHH----HHHhhCCC--CHHHHHHHHHHHHHhh
Q 007104 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR-GAVRP----LIEMLQSP--DVQLREMSAFALGRLA 361 (618)
Q Consensus 289 ~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~-~~~~~----L~~lL~~~--~~~v~~~a~~~L~~l~ 361 (618)
+.|+++.|+.+|.+.+..+++.++.+|++++...+......... ..+.. -++-++.. ..++.+.+...+.++.
T Consensus 207 ~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 207 SMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999997755443332221 11211 22334422 3566667666666665
Q ss_pred c
Q 007104 362 Q 362 (618)
Q Consensus 362 ~ 362 (618)
.
T Consensus 287 ~ 287 (296)
T 1xqr_A 287 S 287 (296)
T ss_dssp C
T ss_pred C
Confidence 3
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.84 E-value=5.9e-20 Score=167.88 Aligned_cols=196 Identities=16% Similarity=0.177 Sum_probs=171.1
Q ss_pred CHHHHHHhhcCCCH--HHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHH
Q 007104 250 ALPTLILMLRSEDS--AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 327 (618)
Q Consensus 250 ~~~~L~~ll~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 327 (618)
.++.++++|+++++ .++..|+++|.+++..++..+..+...|++|.|+.+|.+++.++++.|+++|.|++..+++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999998887 8999999999999988888899999999999999999999999999999999999987889999
Q ss_pred HHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhc----------------CCChhH
Q 007104 328 HIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD----------------SKNGSL 390 (618)
Q Consensus 328 ~l~~~~~~~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~----------------~~~~~v 390 (618)
.+.+.|+++.|+.+|. +++..+++.++.+|+||+..+.++..+.+. ++++|++++. ..+..+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence 9999999999999998 579999999999999999988888888764 6899888662 136689
Q ss_pred HHHHHHHHHHhhc-CCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhC------CHh
Q 007104 391 QHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA------EKG 463 (618)
Q Consensus 391 ~~~a~~~L~~l~~-~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~------~~~ 463 (618)
+++|..+|.||+. ++++++.+.+.+ |+++.|+.+++.. +..
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~--------------------------------Gli~~Lv~~l~~~~~~~~~~~k 215 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCD--------------------------------GLIDSLVHYVRGTIADYQPDDK 215 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTST--------------------------------THHHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCC--------------------------------CcHHHHHHHHHhhhhcccchhH
Confidence 9999999999986 458888888764 3455677777653 557
Q ss_pred HHHHHHHHHHhhcCC
Q 007104 464 VQRRVALALAHLCSP 478 (618)
Q Consensus 464 v~~~a~~~L~~l~~~ 478 (618)
.++.++.+|.||+..
T Consensus 216 ~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 216 ATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhh
Confidence 899999999999864
No 38
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.84 E-value=5.4e-20 Score=168.11 Aligned_cols=195 Identities=16% Similarity=0.210 Sum_probs=170.0
Q ss_pred ChHHHHHhhcCCCH--HHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHH
Q 007104 208 GIPPLVELLEFTDT--KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (618)
Q Consensus 208 ~i~~L~~ll~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 285 (618)
.++.++++|.++++ .++..++++|.+++..+++++..+.+.|+++.|+.+|++++++++..|+|+|.||+.++++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 57999999999887 8999999999999987889999999999999999999999999999999999999988889999
Q ss_pred HHHhcCCHHHHHHhhc-CCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhC----------------CCCHH
Q 007104 286 EVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ----------------SPDVQ 348 (618)
Q Consensus 286 ~~~~~~~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~----------------~~~~~ 348 (618)
.+.+.|+++.|+.+|. +.+.++++.++.+|+|++.. +..+..+.+. .++.|+.++. ..++.
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence 9999999999999998 46889999999999999854 5666666664 5888887653 13779
Q ss_pred HHHHHHHHHHHhhcCC-CcchhhHhcC-CHHHHHHhhcC------CChhHHHHHHHHHHHhhcC
Q 007104 349 LREMSAFALGRLAQDM-HNQAGIAHNG-GLVPLLKLLDS------KNGSLQHNAAFALYGLADN 404 (618)
Q Consensus 349 v~~~a~~~L~~l~~~~-~~~~~l~~~~-~l~~L~~ll~~------~~~~v~~~a~~~L~~l~~~ 404 (618)
+++++.++|.||+..+ +.|..+.+.+ +++.|+.+++. .+...+++|+.+|.||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999999854 7788888765 57999999864 2567899999999999843
No 39
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.76 E-value=9.3e-17 Score=172.89 Aligned_cols=414 Identities=14% Similarity=0.086 Sum_probs=286.4
Q ss_pred HHHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHH
Q 007104 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFAL 140 (618)
Q Consensus 61 ~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L 140 (618)
.+++.+...+. +++..++..|+..|..++..-... ......+|.|..++++++. .+|..|+.+|
T Consensus 164 ~l~~~l~~l~~--d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~------------~vr~~a~~~l 227 (588)
T 1b3u_A 164 ELRQYFRNLCS--DDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQD------------SVRLLAVEAC 227 (588)
T ss_dssp HHHHHHHHHHT--CSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCH------------HHHTTHHHHH
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcH------------HHHHHHHHHH
Confidence 34444443332 346678999999999998731111 1234678889998877665 9999999999
Q ss_pred HHhc--CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcC
Q 007104 141 GLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218 (618)
Q Consensus 141 ~~l~--~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~ 218 (618)
+.++ ..++. ....+++.+..++.+.+ +.++..++.+|+.++..... .......++.+..++++
T Consensus 228 ~~l~~~~~~~~----~~~~~~~~l~~~~~d~~--------~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d 292 (588)
T 1b3u_A 228 VNIAQLLPQED----LEALVMPTLRQAAEDKS--------WRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKD 292 (588)
T ss_dssp HHHHHHSCHHH----HHHHTHHHHHHHHTCSS--------HHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTC
T ss_pred HHHHHhCCHHH----HHHHHHHHHHHHccCCC--------HHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCC
Confidence 9998 23221 22345777777776543 38999999999999863221 12234568999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCCccc-HHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHH
Q 007104 219 TDTKVQRAAAGALRTLAFKNDEN-KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297 (618)
Q Consensus 219 ~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 297 (618)
+++.+|..++.+|..++...+.. ........+++.+..+++++++.+|..++++|..++..... ......+++.+.
T Consensus 293 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~ 369 (588)
T 1b3u_A 293 CEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFL 369 (588)
T ss_dssp SSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHH
Confidence 99999999999999998643221 11122345678888999999999999999999998653221 112234789999
Q ss_pred HhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHH
Q 007104 298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLV 377 (618)
Q Consensus 298 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~ 377 (618)
.++.+.+++++..++.++..+....... .....++|.+..++.++++.+|..++.++..++..-.. .......++
T Consensus 370 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~ 444 (588)
T 1b3u_A 370 AQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNS 444 (588)
T ss_dssp HHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCH--HHHHHHHHH
Confidence 9999999999999999888886432211 12234678888999999999999999999998752111 122234577
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccch-hhhhHHHHHHHHHHHHHHH-----HhhhhHH
Q 007104 378 PLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEF-IVQATKDCVAKTLKRLEEK-----IHGRVLN 451 (618)
Q Consensus 378 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~l~ 451 (618)
.+..++.++++.+|..|+.++..++...... ......++.+..... .....+......+..+... +...+++
T Consensus 445 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~ 522 (588)
T 1b3u_A 445 LCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLP 522 (588)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 7888999999999999999999997542221 112233443332111 1122333333333333222 3467889
Q ss_pred HHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhh
Q 007104 452 HLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 517 (618)
Q Consensus 452 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 517 (618)
.++.+++++++.+|..++++|+.++..-... +.....+|.|..++.+.++++|..|+.++..+.
T Consensus 523 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 523 TVLRMAGDPVANVRFNVAKSLQKIGPILDNS--TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH--HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHhhCCCCCchHHHHHHHHHHHHHHHhchh--hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 9999999999999999999999997543221 123456788888888999999999999998765
No 40
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.76 E-value=1.5e-16 Score=171.29 Aligned_cols=416 Identities=13% Similarity=0.056 Sum_probs=284.9
Q ss_pred HHHHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHH
Q 007104 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA 139 (618)
Q Consensus 60 ~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~ 139 (618)
..+++.|.... +.+.+++..++..|..+...-... -.....++.|..++.+++. .+|..|..+
T Consensus 48 ~~l~~~L~~~~---d~~~~vr~~~~~~L~~~~~~~~~~--~~~~~ll~~L~~l~~~~~~------------~vR~~a~~~ 110 (588)
T 1b3u_A 48 SELLPFLTDTI---YDEDEVLLALAEQLGTFTTLVGGP--EYVHCLLPPLESLATVEET------------VVRDKAVES 110 (588)
T ss_dssp HTHHHHHHHTC---CCCHHHHHHHHHHHTTCSGGGTSG--GGGGGGHHHHHHHTTSSCH------------HHHHHHHHH
T ss_pred HHHHHHHHHhc---CCcHHHHHHHHHHHHHHHhccCcH--HHHHHHHHHHHHHHhCchH------------HHHHHHHHH
Confidence 34555555443 234568888899888776521000 0123457777777766554 999999999
Q ss_pred HHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcC
Q 007104 140 LGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218 (618)
Q Consensus 140 L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~ 218 (618)
|.+++ ..+.. ......++.+..+..+.+. ..+..++.++..++...+.. .....++.+..++.+
T Consensus 111 L~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~--------~~R~~a~~~l~~~~~~~~~~----~~~~l~~~l~~l~~d 175 (588)
T 1b3u_A 111 LRAISHEHSPS---DLEAHFVPLVKRLAGGDWF--------TSRTSACGLFSVCYPRVSSA----VKAELRQYFRNLCSD 175 (588)
T ss_dssp HHHHHTTSCHH---HHHHTHHHHHHHHHTCSSH--------HHHHHHGGGHHHHTTTSCHH----HHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCHH---HHHHHHHHHHHHHhcCCCc--------HHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHHhCC
Confidence 99999 33321 1222345666666554322 78888999999888654432 123457888889999
Q ss_pred CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHH
Q 007104 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 298 (618)
Q Consensus 219 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 298 (618)
+++.+|..++.+|..++...+. + .....+++.+..+++++++.+|..|+.+|..++...+. ......+++.+..
T Consensus 176 ~~~~VR~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~ 249 (588)
T 1b3u_A 176 DTPMVRRAAASKLGEFAKVLEL--D-NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ---EDLEALVMPTLRQ 249 (588)
T ss_dssp SCHHHHHHHHHHHHHHHHTSCH--H-HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH---HHHHHHTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcH--H-hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHH
Confidence 9999999999999999863222 1 22346788899999999999999999999999765332 1223447888999
Q ss_pred hhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcc--hhhHhcCCH
Q 007104 299 LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ--AGIAHNGGL 376 (618)
Q Consensus 299 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~--~~l~~~~~l 376 (618)
++.+.++.+|..++.+|+.++..... ......+++.++.+++++++.+|..++.+|..++...... ........+
T Consensus 250 ~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~ 326 (588)
T 1b3u_A 250 AAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQIL 326 (588)
T ss_dssp HHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHH
T ss_pred HccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHH
Confidence 99999999999999999999742111 1233567899999999999999999999999998743322 112344567
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccch-hhhhHHHHHHHHHHHHHHH-----HhhhhH
Q 007104 377 VPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEF-IVQATKDCVAKTLKRLEEK-----IHGRVL 450 (618)
Q Consensus 377 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~l 450 (618)
+.+..++.++++.+|..++.+|..++..-... ......++.+..... ....++......+..+... ....++
T Consensus 327 p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~l 404 (588)
T 1b3u_A 327 PCIKELVSDANQHVKSALASVIMGLSPILGKD--NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLL 404 (588)
T ss_dssp HHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH--HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh--HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 78889999999999999999999987432111 111122222222111 1122333333333333221 235688
Q ss_pred HHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhhh
Q 007104 451 NHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (618)
Q Consensus 451 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (618)
+.+..++.+.++.+|..++.+|..++..-... +.....++.+..++.+++..+|..|+.++..++...
T Consensus 405 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 472 (588)
T 1b3u_A 405 PAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF 472 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999986432211 123457889999999999999999999999998764
No 41
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.73 E-value=2.1e-17 Score=185.59 Aligned_cols=434 Identities=14% Similarity=0.127 Sum_probs=275.0
Q ss_pred hhhHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHhccC-hhhHHH-HH---hCCCHHHHHHhhcCCCCCccccCCCc
Q 007104 53 QALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNW-IV---EGGAVPALVKHLQAPPTSEADRNLKP 127 (618)
Q Consensus 53 ~~~~~~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~-~~---~~g~v~~Lv~lL~~~~~~~~~~~~~~ 127 (618)
..|...++.+++.+.+. +..++..++.+|..++.+ +..... .. -...+|.|++++++++.
T Consensus 124 ~~wp~ll~~L~~~l~~~------~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~--------- 188 (852)
T 4fdd_A 124 QNWPDLLPKLCSLLDSE------DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSP--------- 188 (852)
T ss_dssp TTCTTHHHHHHHHHSCS------SHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSH---------
T ss_pred cccHHHHHHHHHHHcCC------CHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCH---------
Confidence 34555666666665543 456788899999998873 222110 00 12356777777775544
Q ss_pred chhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcC
Q 007104 128 FEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207 (618)
Q Consensus 128 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~ 207 (618)
.+|..|+++|..+...........-.+.++.+..++.+.+. +++..++++|..++...+..-.... .+
T Consensus 189 ---~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~--------~vr~~a~~~L~~l~~~~~~~~~~~l-~~ 256 (852)
T 4fdd_A 189 ---KIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEP--------EVRKNVCRALVMLLEVRMDRLLPHM-HN 256 (852)
T ss_dssp ---HHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCH--------HHHHHHHHHHHHHHHHCHHHHGGGH-HH
T ss_pred ---HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCH--------HHHHHHHHHHHHHHHhCHHHHHHHH-HH
Confidence 99999999999888322111000011356777777665544 8999999999999986664322211 24
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHh---cCCHHHHHHhh-----------cC-----------CC
Q 007104 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE---CNALPTLILML-----------RS-----------ED 262 (618)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~---~~~~~~L~~ll-----------~~-----------~~ 262 (618)
.++.+...+.+.++.++..|+..+..++.. ...+. ... ..+++.++..+ .+ .+
T Consensus 257 l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~-~~~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~ 334 (852)
T 4fdd_A 257 IVEYMLQRTQDQDENVALEACEFWLTLAEQ-PICKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISD 334 (852)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHTTS-TTHHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CC
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHhcc-hhHHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccccccccc
Confidence 678888888889999999999999999863 22222 222 13456666665 22 12
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhh
Q 007104 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (618)
Q Consensus 263 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL 342 (618)
..++..+..+|..++...+. .++ ..+++.+..++.+.++.+|..|++++++++.+....... .-.++++.++..+
T Consensus 335 ~~vr~~a~~~L~~la~~~~~---~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l 409 (852)
T 4fdd_A 335 WNLRKCSAAALDVLANVYRD---ELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCL 409 (852)
T ss_dssp CCHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHc
Confidence 34688899999998764332 111 235778888888899999999999999998765542221 2245789999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCc-chhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcch-hHHHhhcccccc
Q 007104 343 QSPDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV-ADFIRVGGVQKL 420 (618)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~~~~~-~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~l~~~~~~~~L 420 (618)
.++++.+|..+++++++++..... .........++.|++.+.+.++.++..|+++|.+++...... ..+. .+.++.|
T Consensus 410 ~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l-~~ll~~L 488 (852)
T 4fdd_A 410 SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL-AYILDTL 488 (852)
T ss_dssp TCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH-HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH-HHHHHHH
Confidence 999999999999999999863211 111122345777888888889999999999999998432211 1110 1122222
Q ss_pred cccchhh--------------------------------------------------hhHHHHHHHHHHHHHH---HHhh
Q 007104 421 QDGEFIV--------------------------------------------------QATKDCVAKTLKRLEE---KIHG 447 (618)
Q Consensus 421 ~~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~~---~~~~ 447 (618)
....... ....+|+......+.. .+-.
T Consensus 489 ~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~ 568 (852)
T 4fdd_A 489 VFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCE 568 (852)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 1110000 0011111111111111 0123
Q ss_pred hhHHHHHHHHhh-----------------CCHhHHHHHHHHHHhhcCCCc--cccceecCCchHHHHHHhcCCChhhhhh
Q 007104 448 RVLNHLLYLMRV-----------------AEKGVQRRVALALAHLCSPDD--QRTIFIDGGGLELLLGLLGSTNPKQQLD 508 (618)
Q Consensus 448 ~~l~~L~~ll~~-----------------~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~l~~L~~ll~~~~~~v~~~ 508 (618)
.+++.++.++.. ++.+++..++.+++.++..-+ ....+...+.++.+...+.++++.+|..
T Consensus 569 ~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~ 648 (852)
T 4fdd_A 569 PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQS 648 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHH
Confidence 344444445442 256688888999998875333 2233335688999999999999999999
Q ss_pred HHHHHHHhhhhhc
Q 007104 509 GAVALFKLANKAT 521 (618)
Q Consensus 509 a~~~L~~L~~~~~ 521 (618)
+..++..++....
T Consensus 649 a~~~l~~l~~~~~ 661 (852)
T 4fdd_A 649 SFALLGDLTKACF 661 (852)
T ss_dssp HHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHhh
Confidence 9999999997643
No 42
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.72 E-value=6e-15 Score=150.79 Aligned_cols=341 Identities=14% Similarity=0.140 Sum_probs=254.5
Q ss_pred hhhhHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhH
Q 007104 52 RQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHE 131 (618)
Q Consensus 52 ~~~~~~~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~ 131 (618)
.+.....++.+.+.+.+.-- -+| +..|+..|..+++. ++.. +..++++.|+..|+....+ .+
T Consensus 16 ~qs~~etI~~L~~Rl~~~tl--~eD---RR~Av~~Lk~~sk~--y~~~-Vg~~~l~~li~~L~~d~~D----------~e 77 (651)
T 3grl_A 16 QHTEAETIQKLCDRVASSTL--LDD---RRNAVRALKSLSKK--YRLE-VGIQAMEHLIHVLQTDRSD----------SE 77 (651)
T ss_dssp --CHHHHHHHHHHHHHHCCS--HHH---HHHHHHHHHHTTTT--TTTH-HHHHTHHHHHHHHHSCTTC----------HH
T ss_pred CCChhhHHHHHHHHHhhccc--hhH---HHHHHHHHHHHHHH--hHHH-hhhhhHHHHHHHHhccccc----------HH
Confidence 34456677888888877521 223 45788888888863 3333 3467799999999887653 38
Q ss_pred HHHHHHHHHHHhc-CChh-----------------hHHHH-HhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHh
Q 007104 132 VEKGSAFALGLLA-VKPE-----------------HQQLI-VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNL 192 (618)
Q Consensus 132 v~~~a~~~L~~l~-~~~~-----------------~~~~~-~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L 192 (618)
+...++.+|.++. .+++ +.+.+ .+.+.++.|+.+|+..+. .++.+++.+|..|
T Consensus 78 ~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df--------~vR~~alqlL~~L 149 (651)
T 3grl_A 78 IIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDF--------HVRWPGVKLLTSL 149 (651)
T ss_dssp HHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccH--------HHHHHHHHHHHHH
Confidence 8889999998766 3321 22233 356789999999987655 8999999999999
Q ss_pred hhcCch-hhHHHHh-cCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCC----HHHH
Q 007104 193 AHENSS-IKTRVRM-EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED----SAIH 266 (618)
Q Consensus 193 ~~~~~~-~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~----~~v~ 266 (618)
+...+. .+..+.. .++++.|+.+|.++...+|..++..|.+++.++.+.++.+.-.|+++.|+.+++.+. ..+.
T Consensus 150 ~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv 229 (651)
T 3grl_A 150 LKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVV 229 (651)
T ss_dssp HHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHH
T ss_pred HhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhH
Confidence 998887 6777774 599999999999999999999999999999988889999999999999999998544 3788
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCC----hhHH--HH---HHHHHHHHhcC------ChhhHHHHHh
Q 007104 267 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC----SESQ--RE---AALLLGQFAAT------DSDCKVHIVQ 331 (618)
Q Consensus 267 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~----~~~~--~~---a~~~L~~l~~~------~~~~~~~l~~ 331 (618)
..|+.+|.+|...++.++..+.+.|+++.|..++.... |..+ .+ +..++.-+... ...++..+.+
T Consensus 230 ~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~ 309 (651)
T 3grl_A 230 EDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQ 309 (651)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 99999999999999999899999999999999997542 2222 22 44455555543 2356778889
Q ss_pred cCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCCC-cchhhHhcC---------CHHHHHHhhcCC-ChhHHHHHHHHH
Q 007104 332 RGAVRPLIEMLQSP--DVQLREMSAFALGRLAQDMH-NQAGIAHNG---------GLVPLLKLLDSK-NGSLQHNAAFAL 398 (618)
Q Consensus 332 ~~~~~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~-~~~~l~~~~---------~l~~L~~ll~~~-~~~v~~~a~~~L 398 (618)
.|+++.|++++..+ ...++..|..+++.+.+++. ++..+.... .+..|+.++.+. ...+|.+|+.++
T Consensus 310 ~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl 389 (651)
T 3grl_A 310 CGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCF 389 (651)
T ss_dssp TTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHH
Confidence 99999999998865 67899999999999988654 455554432 222344445553 578899999999
Q ss_pred HHhhcCCcchhHHHhhcccc
Q 007104 399 YGLADNEDNVADFIRVGGVQ 418 (618)
Q Consensus 399 ~~l~~~~~~~~~l~~~~~~~ 418 (618)
..+..+.+..+..+....++
T Consensus 390 ~ay~~~N~~~Q~~i~~~llp 409 (651)
T 3grl_A 390 QCFLYKNQKGQGEIVSTLLP 409 (651)
T ss_dssp HHHHTTCHHHHHHHHHTTSS
T ss_pred HHHHhCCHHHHHHHHHhcCC
Confidence 99876554433333333333
No 43
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.71 E-value=1.1e-17 Score=138.16 Aligned_cols=77 Identities=30% Similarity=0.427 Sum_probs=68.7
Q ss_pred HhhhcCCCcccEEEEECCeEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhCCccccCC
Q 007104 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFDEFCAFNLSS 617 (618)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~~ 617 (618)
+.+++++.++||++.++|+.|+|||.||+++|+||++||.++|.|+....|.++++++++|+.+|+|+|||++.+++
T Consensus 17 ~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~~~~ 93 (120)
T 2if5_A 17 NEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVST 93 (120)
T ss_dssp HHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSCCCCCG
T ss_pred HHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCCCccCH
Confidence 56888999999999999999999999999999999999999999999999999999999999999999999998764
No 44
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.71 E-value=2.1e-16 Score=177.36 Aligned_cols=384 Identities=14% Similarity=0.082 Sum_probs=266.9
Q ss_pred HhHHHHHHHHHHHHHhccChhh-HHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHH
Q 007104 75 ADRAAAKRATHVLAELAKNEEV-VNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL 152 (618)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~ 152 (618)
.+..+|..|+-.|.+....... ...-.+..+-+.+++.|.+++. .+|..++.+++.++ .+...
T Consensus 60 ~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~~~~------------~vr~~~a~~i~~ia~~~~~~--- 124 (852)
T 4fdd_A 60 EDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSP------------LIRATVGILITTIASKGELQ--- 124 (852)
T ss_dssp SCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTTCSSH------------HHHHHHHHHHHHHHHHTTTT---
T ss_pred CChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHcCCCH------------HHHHHHHHHHHHHHHhcCcc---
Confidence 4667888999999988752110 0001112334567777765544 89999999999998 32110
Q ss_pred HHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHH----hcCChHHHHHhhcCCCHHHHHHHH
Q 007104 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR----MEGGIPPLVELLEFTDTKVQRAAA 228 (618)
Q Consensus 153 ~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~----~~~~i~~L~~ll~~~~~~v~~~a~ 228 (618)
.-.+.++.++..+.+.+. .+++.++.+|..++...+.....-. ....++.++.+++++++.+|..|+
T Consensus 125 -~wp~ll~~L~~~l~~~~~--------~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~ 195 (852)
T 4fdd_A 125 -NWPDLLPKLCSLLDSEDY--------NTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAV 195 (852)
T ss_dssp -TCTTHHHHHHHHHSCSSH--------HHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHH
T ss_pred -ccHHHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 124578888888877654 8899999999999975543211000 123567788888889999999999
Q ss_pred HHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHH
Q 007104 229 GALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ 308 (618)
Q Consensus 229 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~ 308 (618)
++|..+....+....... .++++.+..++.++++.++..++++|..++...+......+ .++++.+..++.+.+..++
T Consensus 196 ~aL~~~~~~~~~~~~~~~-~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~vr 273 (852)
T 4fdd_A 196 ACVNQFIISRTQALMLHI-DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQDENVA 273 (852)
T ss_dssp HHHHTTTTTTCHHHHTSH-HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHhcccHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCcHHHH
Confidence 999988753322111111 24678888888999999999999999999876654322222 2467888888898889999
Q ss_pred HHHHHHHHHHhcCChhhHHHHH--hcCChHHHHHhh-----------CC-----------CCHHHHHHHHHHHHHhhcCC
Q 007104 309 REAALLLGQFAATDSDCKVHIV--QRGAVRPLIEML-----------QS-----------PDVQLREMSAFALGRLAQDM 364 (618)
Q Consensus 309 ~~a~~~L~~l~~~~~~~~~~l~--~~~~~~~L~~lL-----------~~-----------~~~~v~~~a~~~L~~l~~~~ 364 (618)
..|+..+..++... ..+..+. -..+++.++..+ .+ .+..+|..+..+|..++...
T Consensus 274 ~~a~e~l~~l~~~~-~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~ 352 (852)
T 4fdd_A 274 LEACEFWLTLAEQP-ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVY 352 (852)
T ss_dssp HHHHHHHHHHTTST-THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhc
Confidence 99999999997432 2222111 123456666666 23 22347889999999998643
Q ss_pred CcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHH
Q 007104 365 HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 444 (618)
Q Consensus 365 ~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 444 (618)
. ..+ -...++.+.+++.+.++.+|..|+.+|++++.+... .+ . .
T Consensus 353 ~--~~~-~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~--~~-~-~----------------------------- 396 (852)
T 4fdd_A 353 R--DEL-LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ--GM-I-P----------------------------- 396 (852)
T ss_dssp G--GGG-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH--HH-G-G-----------------------------
T ss_pred c--HHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH--HH-H-H-----------------------------
Confidence 2 111 223566777888889999999999999999865432 11 1 0
Q ss_pred HhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCc-cccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhhhc
Q 007104 445 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (618)
Q Consensus 445 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (618)
...++++.++.++.++++.+|..++++|++++.... ......-.+.++.|+..+.++++.+|..|+++|.+++....
T Consensus 397 ~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~ 474 (852)
T 4fdd_A 397 YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC 474 (852)
T ss_dssp GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 123578889999999999999999999999985321 11111234678899999999999999999999999998654
No 45
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.71 E-value=5.9e-15 Score=150.79 Aligned_cols=374 Identities=15% Similarity=0.145 Sum_probs=271.3
Q ss_pred CHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHH
Q 007104 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184 (618)
Q Consensus 105 ~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~ 184 (618)
.|+.|+.-+.+... ++=|+.|+..|..++. +++.. +..++++.|+..|++...+. ++...
T Consensus 22 tI~~L~~Rl~~~tl-----------~eDRR~Av~~Lk~~sk--~y~~~-Vg~~~l~~li~~L~~d~~D~------e~v~~ 81 (651)
T 3grl_A 22 TIQKLCDRVASSTL-----------LDDRRNAVRALKSLSK--KYRLE-VGIQAMEHLIHVLQTDRSDS------EIIGY 81 (651)
T ss_dssp HHHHHHHHHHHCCS-----------HHHHHHHHHHHHHTTT--TTTTH-HHHHTHHHHHHHHHSCTTCH------HHHHH
T ss_pred HHHHHHHHHhhccc-----------hhHHHHHHHHHHHHHH--HhHHH-hhhhhHHHHHHHHhcccccH------HHHHH
Confidence 47778887877665 3779999999999982 23333 34567999999999876543 89999
Q ss_pred HHHHHHHhhhcCchh-----------------h-HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc-cHHHH
Q 007104 185 AADAITNLAHENSSI-----------------K-TRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-NKNQI 245 (618)
Q Consensus 185 a~~~L~~L~~~~~~~-----------------~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~ 245 (618)
++.+|.++...++.. . ..+.+.+.++.|+.+|++.+..+|.+++.+|..++..++. .++.+
T Consensus 82 ~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~I 161 (651)
T 3grl_A 82 ALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQII 161 (651)
T ss_dssp HHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 999998877544321 1 1223467899999999999999999999999999987777 67777
Q ss_pred Hh-cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCCh----hHHHHHHHHHHHHhc
Q 007104 246 VE-CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS----ESQREAALLLGQFAA 320 (618)
Q Consensus 246 ~~-~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~----~~~~~a~~~L~~l~~ 320 (618)
.. .++++.|+.+|++..+.+|..++..|.+|+.++++.++.+.-+|+++.|+.++..... .+...++.+|.|+..
T Consensus 162 l~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr 241 (651)
T 3grl_A 162 LVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLK 241 (651)
T ss_dssp HHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHT
T ss_pred HhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHh
Confidence 74 5999999999999999999999999999999999998888889999999999986543 677889999999999
Q ss_pred CChhhHHHHHhcCChHHHHHhhCCCC------HHHHHH---HHHHHHHhhcCC-------CcchhhHhcCCHHHHHHhhc
Q 007104 321 TDSDCKVHIVQRGAVRPLIEMLQSPD------VQLREM---SAFALGRLAQDM-------HNQAGIAHNGGLVPLLKLLD 384 (618)
Q Consensus 321 ~~~~~~~~l~~~~~~~~L~~lL~~~~------~~v~~~---a~~~L~~l~~~~-------~~~~~l~~~~~l~~L~~ll~ 384 (618)
.++.++..+.+.++++.|..+|+.++ .....+ +..++.-|+... .++..+.+.|++..|++++.
T Consensus 242 ~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~ 321 (651)
T 3grl_A 242 NNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILM 321 (651)
T ss_dssp TCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHT
T ss_pred cCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHc
Confidence 99999999999999999999997532 122233 445555555432 24667899999999999987
Q ss_pred CC--ChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhC-C
Q 007104 385 SK--NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-E 461 (618)
Q Consensus 385 ~~--~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~-~ 461 (618)
+. +..++..|+.++..+.++....+..+..--++.... ...++.-|+.++.+. .
T Consensus 322 ~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~-----------------------~p~li~lL~~~~~~~~~ 378 (651)
T 3grl_A 322 ATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPP-----------------------RPAIVVLLMSMVNERQP 378 (651)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSC-----------------------EEHHHHHHHHHTCTTSC
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCC-----------------------cChHHHHHHHHhccccc
Confidence 65 678999999999999876555444433222221100 011223344444443 5
Q ss_pred HhHHHHHHHHHHhhcCCCc-cccceecC----------C---chHHHHHHhcCCChhhhhhHHHHHHHhhhhhc
Q 007104 462 KGVQRRVALALAHLCSPDD-QRTIFIDG----------G---GLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (618)
Q Consensus 462 ~~v~~~a~~~L~~l~~~~~-~~~~~~~~----------~---~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (618)
..+|.+|+.++..+..+.+ .+..+... + .-..|..-+-+.++---..|+.++.++..+..
T Consensus 379 ~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~ 452 (651)
T 3grl_A 379 FVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENA 452 (651)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCH
Confidence 7889999999998875553 11111100 1 11234455556677555678888888887643
No 46
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.70 E-value=1.3e-17 Score=135.27 Aligned_cols=74 Identities=30% Similarity=0.490 Sum_probs=64.5
Q ss_pred hhcCCCcccEEEEECC----eEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhCCccccCC
Q 007104 543 FVNNATLSDVTFLVEG----RRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFDEFCAFNLSS 617 (618)
Q Consensus 543 ~~~~~~~~Dv~~~~~~----~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~~ 617 (618)
+++++.++||++.+++ +.|+|||.||+++|+||++||.++|.|+. ..|.++++++++|+.+|+|+|||++.+++
T Consensus 2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~ 79 (109)
T 2vkp_A 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEIDLEA 79 (109)
T ss_dssp CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCT
T ss_pred cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCccCCH
Confidence 5678899999999998 89999999999999999999999999988 89999999999999999999999998874
No 47
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.69 E-value=4.2e-17 Score=136.11 Aligned_cols=76 Identities=26% Similarity=0.471 Sum_probs=72.1
Q ss_pred HhhhcCCCcccEEEEECCeEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceec-CCCCHHHHHHHHHHHhCCccccCC
Q 007104 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI-PNIRWEVFELMMRFDEFCAFNLSS 617 (618)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~-~~~~~~~~~~~l~~~Yt~~~~~~~ 617 (618)
+.+++++.++||++.++|+.|+|||.||+++|+||++||.++|.| ....|.+ +++++++|+.+|+|+|||++.+++
T Consensus 21 ~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~~~~ 97 (127)
T 1r29_A 21 NRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDPEINPEGFNILLDFMYTSRLNLRE 97 (127)
T ss_dssp HHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCTTSCHHHHHHHHHHHHHSCCCCCT
T ss_pred HHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCCCCCHHHHHHHHHHHcCCCcCcCH
Confidence 578899999999999999999999999999999999999999998 7789999 999999999999999999998875
No 48
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.68 E-value=4.8e-17 Score=138.33 Aligned_cols=77 Identities=16% Similarity=0.225 Sum_probs=68.1
Q ss_pred HhhhcCCCcccEEEEECCeEEehhHHHHhcCCHHHHHhhcCCCCC--CCCCceecCCCCHHHHHHHHHHHhCCccccCC
Q 007104 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYRE--KDARDIEIPNIRWEVFELMMRFDEFCAFNLSS 617 (618)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e--~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~~ 617 (618)
+.++.++.++||++.++|+.|+|||.||+++|+||++||.++|.| +....|.++++++++|+.+|+|+|||++.+++
T Consensus 39 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~~i~~ 117 (144)
T 2ppi_A 39 SSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNE 117 (144)
T ss_dssp HHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSCCCCCT
T ss_pred HHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCCCCCCH
Confidence 578889999999999999999999999999999999999998876 66779999999999999999999999998875
No 49
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.66 E-value=6.6e-17 Score=132.93 Aligned_cols=73 Identities=25% Similarity=0.340 Sum_probs=68.2
Q ss_pred HhhhcCCCcccEEEEECCeEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhCCccccCC
Q 007104 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFDEFCAFNLSS 617 (618)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~~ 617 (618)
+.+++++.++||++.++|+.|+|||.||+++|+||++||.+++ ...|.++++++++|+.+|+|+|||++.+++
T Consensus 16 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l~~~~~~~f~~ll~~iYtg~~~~~~ 88 (119)
T 3b84_A 16 NKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVLPAGFAEIFGLLLDFFYTGHLALTS 88 (119)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEECGGGHHHHHHHHHHHHHSCCCCCT
T ss_pred HHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEeCCCCHHHHHHHHHHHcCCCCccCH
Confidence 5688899999999999999999999999999999999999876 568999999999999999999999998875
No 50
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.66 E-value=9.2e-17 Score=133.65 Aligned_cols=75 Identities=27% Similarity=0.391 Sum_probs=70.0
Q ss_pred HhhhcCCCcccEEEEECCeEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceecCC-CCHHHHHHHHHHHhCCccccCC
Q 007104 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPN-IRWEVFELMMRFDEFCAFNLSS 617 (618)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~~~-~~~~~~~~~l~~~Yt~~~~~~~ 617 (618)
+.+++++.++||++.++|+.|+|||.||+++|+||++||.+++.| ...|.+++ +++++|+.+|+|+|||++.+++
T Consensus 24 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~~~~~~~f~~~l~~iYtg~~~~~~ 99 (125)
T 3ohu_A 24 NDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSLPEEVTARGFGPLLQFAYTAKLLLSR 99 (125)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEECCTTCCHHHHHHHHHHHTTSEEEECT
T ss_pred HHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEeCCCCCHHHHHHHHHhHcCCceEECH
Confidence 578889999999999999999999999999999999999998876 67899998 9999999999999999998865
No 51
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.65 E-value=1.1e-14 Score=151.72 Aligned_cols=391 Identities=12% Similarity=0.053 Sum_probs=256.6
Q ss_pred HHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHH
Q 007104 62 QVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141 (618)
Q Consensus 62 l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~ 141 (618)
+.+.|...++ .|..++..|-..|..+..+. ..+.+..|+.++.+.+. ++.+|..|+..|.
T Consensus 3 l~~~L~~~~s---~d~~~r~~Ae~~L~~~~~~~-------~~~~~~~L~~il~~~~~----------~~~vR~~a~~~Lk 62 (462)
T 1ibr_B 3 LITILEKTVS---PDRLELEAAQKFLERAAVEN-------LPTFLVELSRVLANPGN----------SQVARVAAGLQIK 62 (462)
T ss_dssp HHHHHHHTTC---SCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTTS----------CHHHHHHHHHHHH
T ss_pred HHHHHHHhcC---CCHHHHHHHHHHHHHHHhhC-------hHHHHHHHHHHHHcCCC----------ChHHHHHHHHHHH
Confidence 3444544432 25567888888888765420 12346778888876533 1389999999999
Q ss_pred HhcCCh-hhHH-----HH------HhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCCh
Q 007104 142 LLAVKP-EHQQ-----LI------VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (618)
Q Consensus 142 ~l~~~~-~~~~-----~~------~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i 209 (618)
++.... .... .. ....+-..++..|.+.+. .+ ..++.++..++....+... -.+.+
T Consensus 63 ~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~--------~v-~~~~~~i~~ia~~~~~~~~---w~~ll 130 (462)
T 1ibr_B 63 NSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETY--------RP-SSASQCVAGIACAEIPVNQ---WPELI 130 (462)
T ss_dssp HHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCS--------SS-CSHHHHHHHHHHHHGGGTC---CTTHH
T ss_pred HhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCc--------hh-hHHHHHHHHHHHHhccccc---cHHHH
Confidence 987221 0000 00 011123456666666544 45 6678888888764322111 14578
Q ss_pred HHHHHhhcCC--CHHHHHHHHHHHHHhhcCC-cccHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhHH
Q 007104 210 PPLVELLEFT--DTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPNIK 284 (618)
Q Consensus 210 ~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~ 284 (618)
+.++..+.++ ++.++..++.+|..++... +....... ..+++.++..++++ ++.+|..|++++.++........
T Consensus 131 ~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~ 209 (462)
T 1ibr_B 131 PQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF 209 (462)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999888 8999999999999998632 22111112 23678888888877 78999999999999754322111
Q ss_pred H-HHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 007104 285 K-EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 363 (618)
Q Consensus 285 ~-~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 363 (618)
. .....-+++.+...+.+.+.+++..++.+|..++...+.........++++.++..+++.++.++..++..+..++..
T Consensus 210 ~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 210 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (462)
T ss_dssp TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 0 011111466677777888899999999999999855443211111115677788888889999999999999988753
Q ss_pred CC------------------cchhhHh---cCCHHHHHHhhcC-------CChhHHHHHHHHHHHhhcCCcchhHHHhhc
Q 007104 364 MH------------------NQAGIAH---NGGLVPLLKLLDS-------KNGSLQHNAAFALYGLADNEDNVADFIRVG 415 (618)
Q Consensus 364 ~~------------------~~~~l~~---~~~l~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~ 415 (618)
.. ....+.. ...++.+++.+.. .++.++..|+.+|..++..-.. .+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~---- 363 (462)
T 1ibr_B 290 EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DI---- 363 (462)
T ss_dssp HHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--TH----
T ss_pred HHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--HH----
Confidence 20 0011111 2335555555532 3467888888888888743221 11
Q ss_pred ccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCc-cccceecCCchHHH
Q 007104 416 GVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELL 494 (618)
Q Consensus 416 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~L 494 (618)
-..+++.+...+.++++.+|..++.+|+.++.+.. ....-.-...+|.|
T Consensus 364 ------------------------------~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l 413 (462)
T 1ibr_B 364 ------------------------------VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTL 413 (462)
T ss_dssp ------------------------------HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHH
T ss_pred ------------------------------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 12366777788889999999999999999987543 11111125689999
Q ss_pred HHHhcCCChhhhhhHHHHHHHhhhhhc
Q 007104 495 LGLLGSTNPKQQLDGAVALFKLANKAT 521 (618)
Q Consensus 495 ~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (618)
+..+.++++.+|..|+++|.+++....
T Consensus 414 ~~~l~d~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 414 IELMKDPSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999998753
No 52
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.64 E-value=1.6e-16 Score=133.62 Aligned_cols=73 Identities=25% Similarity=0.331 Sum_probs=65.7
Q ss_pred HhhhcCCCcccEEEEECCeEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhCCccccCC
Q 007104 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFDEFCAFNLSS 617 (618)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~~ 617 (618)
+.+++++.++||++.++|+.|+|||.||+++|+||++||.+++ ...|.++++++++|+.+|+|+|||++.++.
T Consensus 17 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l~~~~~~~f~~lL~fiYtg~~~i~~ 89 (135)
T 2yy9_A 17 NKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVLPAGFAEIFGLLLDFFYTGHLALTS 89 (135)
T ss_dssp HHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC--------CCEEECGGGHHHHHHHHHHHHHSCCCCCT
T ss_pred HHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEeCCCCHHHHHHHHHHHhCCCCCCCH
Confidence 6788999999999999999999999999999999999999876 568999999999999999999999998875
No 53
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.64 E-value=9.1e-17 Score=138.02 Aligned_cols=86 Identities=30% Similarity=0.368 Sum_probs=78.1
Q ss_pred CCCCcccchhHhhhcCCCcccEEEEECCeEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhC
Q 007104 531 PSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFDEF 610 (618)
Q Consensus 531 ~~~~~~~~l~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt 610 (618)
|++++...+. .+++++.++|+++.++|+.|+|||.||+++|+||++||.++|.|+....|.++++++++|+.+|+|+||
T Consensus 8 p~~~l~~~l~-~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~ 86 (145)
T 4eoz_A 8 PECRLADELG-GLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYT 86 (145)
T ss_dssp CCCCHHHHHH-HHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHH-HHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhcc
Confidence 4556666664 678889999999999999999999999999999999999999998889999999999999999999999
Q ss_pred CccccCC
Q 007104 611 CAFNLSS 617 (618)
Q Consensus 611 ~~~~~~~ 617 (618)
|++.+++
T Consensus 87 ~~~~~~~ 93 (145)
T 4eoz_A 87 GKAPNLD 93 (145)
T ss_dssp SCCTTGG
T ss_pred CccCCcH
Confidence 9998753
No 54
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.63 E-value=1.6e-16 Score=131.75 Aligned_cols=75 Identities=32% Similarity=0.464 Sum_probs=66.4
Q ss_pred HhhhcCCCcccEEEEECCeEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceecC-CCCHHHHHHHHHHHhCCccccCC
Q 007104 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRFDEFCAFNLSS 617 (618)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~~-~~~~~~~~~~l~~~Yt~~~~~~~ 617 (618)
+.+++++.++||++.++|+.|+|||.||+++|+||++||.+++.|+ ..|.++ ++++++|+.+|+|+|||++.+++
T Consensus 21 ~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~~~v~~~~f~~lL~~iYtg~~~i~~ 96 (124)
T 2ihc_A 21 NDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLPEEVTVKGFEPLIQFAYTAKLILSK 96 (124)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C--EEEECCTTSCHHHHHHHHHHHHHSEEEEET
T ss_pred HHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeecCCcCHHHHHHHHHHhcCCCcccCH
Confidence 5788899999999999999999999999999999999999988764 578884 89999999999999999998764
No 55
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.63 E-value=3.5e-16 Score=128.21 Aligned_cols=73 Identities=22% Similarity=0.342 Sum_probs=66.8
Q ss_pred HhhhcCCCcccEEEEECCeEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceecC--CCCHHHHHHHHHHHhCCccccCC
Q 007104 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP--NIRWEVFELMMRFDEFCAFNLSS 617 (618)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~~--~~~~~~~~~~l~~~Yt~~~~~~~ 617 (618)
+.+++++.++||++.++|+.|+|||.||+++|+||++||.++ ....|.++ ++++++|+.+|+|+|||++.+++
T Consensus 14 ~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~~~ 88 (116)
T 2vpk_A 14 NKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST----SENNVFLDQSQVKADGFQKLLEFIYTGTLNLDS 88 (116)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC----CCSCEECCTTTCCHHHHHHHHHHHHHSCCCCCT
T ss_pred HHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC----CCCeEEeecCCCCHHHHHHHHHHHcCCCcccCH
Confidence 568888999999999999999999999999999999999886 35677777 99999999999999999998875
No 56
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.63 E-value=3.1e-16 Score=132.71 Aligned_cols=75 Identities=32% Similarity=0.460 Sum_probs=69.0
Q ss_pred HhhhcCCCcccEEEEECCeEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceecC-CCCHHHHHHHHHHHhCCccccCC
Q 007104 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRFDEFCAFNLSS 617 (618)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~~-~~~~~~~~~~l~~~Yt~~~~~~~ 617 (618)
+.+++++.++||++.++|+.|+|||.||+++|+||++||.+++.|. ..|.++ ++++++|+.+|+|+|||++.+++
T Consensus 28 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--~~i~l~~~v~~~~~~~lL~~~Ytg~~~i~~ 103 (138)
T 2z8h_A 28 NDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE--LTVTLPEEVTVKGFEPLIQFAYTAKLILSK 103 (138)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT--EEEECCTTSCHHHHHHHHHHHHHSCCCCCT
T ss_pred HHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC--ceEEeCCCCCHHHHHHHHHHhcCCCcccCH
Confidence 5788899999999999999999999999999999999999988763 578885 89999999999999999998875
No 57
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.63 E-value=3.1e-16 Score=127.92 Aligned_cols=71 Identities=28% Similarity=0.423 Sum_probs=65.9
Q ss_pred HhhhcCCCcccEEEEECCeEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhCCcc-ccC
Q 007104 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFDEFCAF-NLS 616 (618)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~-~~~ 616 (618)
+.+++++.++|+++.++|+.|+|||.||+++|+||++||.++ ...|.++++++++|+.+|+|+|||++ .++
T Consensus 23 ~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l~~~~~~~f~~~l~~~Ytg~~~~~~ 94 (116)
T 3fkc_A 23 NEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSFIRAEIFAEILNYIYSSKIVRVR 94 (116)
T ss_dssp HHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHTTSCCCSCC
T ss_pred HHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCCCCHHHHHHHHHhhcCCCcCCCC
Confidence 578889999999999999999999999999999999999874 56899999999999999999999998 565
No 58
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.62 E-value=3.8e-16 Score=128.92 Aligned_cols=72 Identities=21% Similarity=0.397 Sum_probs=66.7
Q ss_pred HhhhcCCCcccEEEEECCeEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhCCccccCC
Q 007104 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFDEFCAFNLSS 617 (618)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~~ 617 (618)
+.+++++.++||++.++|+.|+|||.||+++|+||++||.++ ...|.++++++++|+.+|+|+|||++.+++
T Consensus 20 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~~~~~~f~~ll~~~Ytg~~~~~~ 91 (121)
T 1buo_A 20 NQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLDFLSPKTFQQILEYAYTATLQAKA 91 (121)
T ss_dssp HHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHHHSCCCCCG
T ss_pred HHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEeCCCCHHHHHHHHHhhcCCCcCCCH
Confidence 678889999999999999999999999999999999999863 568999999999999999999999998764
No 59
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.61 E-value=5.2e-16 Score=137.58 Aligned_cols=87 Identities=29% Similarity=0.332 Sum_probs=78.7
Q ss_pred CCCCCcccchhHhhhcCCCcccEEEEECCeEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHh
Q 007104 530 PPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFDE 609 (618)
Q Consensus 530 ~~~~~~~~~l~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Y 609 (618)
.|++++...+ ..+++++.++|+++.++|+.|+|||.||+++|+||++||.++|.|+....|.++++++++|+.+|+|+|
T Consensus 16 ~p~~~l~~~l-~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Y 94 (172)
T 3htm_A 16 VPECRLADEL-GGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIY 94 (172)
T ss_dssp CCCCCHHHHH-HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHh
Confidence 3455666666 468888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCC
Q 007104 610 FCAFNLSS 617 (618)
Q Consensus 610 t~~~~~~~ 617 (618)
||++.+++
T Consensus 95 t~~~~~~~ 102 (172)
T 3htm_A 95 TGKAPNLD 102 (172)
T ss_dssp HSCCTTGG
T ss_pred CCCCCCcH
Confidence 99998753
No 60
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.61 E-value=5.7e-16 Score=129.44 Aligned_cols=73 Identities=26% Similarity=0.443 Sum_probs=68.0
Q ss_pred HhhhcCCCcccEEEEECCeEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceecC-CCCHHHHHHHHHHHhCCccccCC
Q 007104 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRFDEFCAFNLSS 617 (618)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~~-~~~~~~~~~~l~~~Yt~~~~~~~ 617 (618)
+.+++++.++|+++.++|+.|+|||.||+++|+||++||.++ ....|.++ ++++++|+.+|+|+|||++.+++
T Consensus 25 ~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~~ 98 (129)
T 3ga1_A 25 NEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS----RSAVVELPAAVQPQSFQQILSFCYTGRLSMNV 98 (129)
T ss_dssp HHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC----CCSEEECCTTCCHHHHHHHHHHHHHSEEECCT
T ss_pred HHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC----CCCEEEECCCCCHHHHHHHHHHHhCCccccCH
Confidence 578889999999999999999999999999999999999886 66789997 89999999999999999998875
No 61
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.61 E-value=1.2e-13 Score=133.22 Aligned_cols=259 Identities=14% Similarity=0.033 Sum_probs=198.0
Q ss_pred HHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccch
Q 007104 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVN 179 (618)
Q Consensus 100 ~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~ 179 (618)
..+.+.++.|+..|.+++. .+|..|+++|+++.. + +.++.|+.+|.+.+.
T Consensus 19 ~~~~~~i~~L~~~L~~~~~------------~vr~~A~~~L~~~~~-~---------~~~~~L~~~l~d~~~-------- 68 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNS------------LKRISSARVLQLRGG-Q---------DAVRLAIEFCSDKNY-------- 68 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSH------------HHHHHHHHHHHHHCC-H---------HHHHHHHHHHTCSSH--------
T ss_pred HHHHhhHHHHHHHHHcCCH------------HHHHHHHHHHHccCC-c---------hHHHHHHHHHcCCCH--------
Confidence 3456789999999988766 999999999998872 1 357889999987655
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHH-HhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhh
Q 007104 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV-ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (618)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll 258 (618)
.++..++++|..+........ ..++.+. .++.++++.++..++++|..+...++... ..+++.|+.++
T Consensus 69 ~vR~~A~~aL~~l~~~~~~~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l 137 (280)
T 1oyz_A 69 IRRDIGAFILGQIKICKKCED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITA 137 (280)
T ss_dssp HHHHHHHHHHHHSCCCTTTHH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccccccch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHh
Confidence 899999999998874222111 1234444 24577899999999999999975332221 23578899999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHH
Q 007104 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 338 (618)
Q Consensus 259 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L 338 (618)
+++++.++..++++|+++.. .+.++.|+.++.++++.++..++++|+++....+ ..++.|
T Consensus 138 ~d~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L 197 (280)
T 1oyz_A 138 FDKSTNVRRATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCF 197 (280)
T ss_dssp TCSCHHHHHHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHH
T ss_pred hCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHH
Confidence 99999999999999998742 2478999999999999999999999999853332 247889
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccc
Q 007104 339 IEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQ 418 (618)
Q Consensus 339 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~ 418 (618)
+.++.++++.+|..++++|+++.. ...++.|+.++.+++ ++..++.+|..+...
T Consensus 198 ~~~l~d~~~~vR~~A~~aL~~~~~----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~~-------------- 251 (280)
T 1oyz_A 198 VEMLQDKNEEVRIEAIIGLSYRKD----------KRVLSVLCDELKKNT--VYDDIIEAAGELGDK-------------- 251 (280)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHTTC----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCCG--------------
T ss_pred HHHhcCCCHHHHHHHHHHHHHhCC----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCch--------------
Confidence 999999999999999999999862 356888999998754 888999999887531
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh-CCHhHHHHHHHHHHh
Q 007104 419 KLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAH 474 (618)
Q Consensus 419 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~ 474 (618)
.+++.|..++.+ .++++...+..+|.+
T Consensus 252 -----------------------------~~~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 252 -----------------------------TLLPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp -----------------------------GGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred -----------------------------hhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence 245667777765 466777777776653
No 62
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.60 E-value=5.2e-16 Score=127.55 Aligned_cols=72 Identities=25% Similarity=0.337 Sum_probs=66.3
Q ss_pred HhhhcCCCcccEEEEECCeEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhCCccccCC
Q 007104 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFDEFCAFNLSS 617 (618)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~~ 617 (618)
+.+++++.++||++.++|+.|+|||.||+++|+||++||.+ ....|.++++++++|+.+|+|+|||++.+++
T Consensus 19 ~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~-----~~~~i~l~~~~~~~f~~ll~~~Ytg~~~i~~ 90 (119)
T 2q81_A 19 NQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVD-----QKDVVHLDISNAAGLGQVLEFMYTAKLSLSP 90 (119)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHH-----CCSGGGGGGCCHHHHHHHHHHHHHSCCCCCT
T ss_pred HHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcC-----CCCEEEeCCCCHHHHHHHHHHHcCCCCccCH
Confidence 57888899999999999999999999999999999999986 3457889999999999999999999998875
No 63
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.59 E-value=2.7e-13 Score=130.80 Aligned_cols=229 Identities=15% Similarity=0.081 Sum_probs=181.2
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHH
Q 007104 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (618)
Q Consensus 205 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 284 (618)
..+.++.|+..|.++++.+|..|+++|.++.. .+.++.|+.+++++++.++..|+++|+.+.......
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~- 88 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE- 88 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH-
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc-
Confidence 45688999999999999999999999998863 245788999999999999999999999985432211
Q ss_pred HHHHhcCCHHHHH-HhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 007104 285 KEVLAAGALQPVI-GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 363 (618)
Q Consensus 285 ~~~~~~~~l~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 363 (618)
.. +++.|. .++.+.++.++..++++|+++...++... ...++.|+..+.++++.+|..++++|+++..
T Consensus 89 ~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~- 157 (280)
T 1oyz_A 89 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIND- 157 (280)
T ss_dssp HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred hH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-
Confidence 11 234444 34577889999999999999974333222 2357889999999999999999999998754
Q ss_pred CCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHH
Q 007104 364 MHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE 443 (618)
Q Consensus 364 ~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 443 (618)
...++.|+.++.++++.++..|+++|..+....+
T Consensus 158 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~------------------------------------- 191 (280)
T 1oyz_A 158 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS------------------------------------- 191 (280)
T ss_dssp ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH-------------------------------------
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH-------------------------------------
Confidence 2478999999999999999999999998842211
Q ss_pred HHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhh
Q 007104 444 KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 518 (618)
Q Consensus 444 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 518 (618)
.+++.|+.++.++++.+|..++++|+++. ....++.|+.++.++ +++..|+++|..+..
T Consensus 192 ----~~~~~L~~~l~d~~~~vR~~A~~aL~~~~----------~~~~~~~L~~~l~d~--~vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 192 ----DIRDCFVEMLQDKNEEVRIEAIIGLSYRK----------DKRVLSVLCDELKKN--TVYDDIIEAAGELGD 250 (280)
T ss_dssp ----HHHHHHHHHTTCSCHHHHHHHHHHHHHTT----------CGGGHHHHHHHHTSS--SCCHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHHHHHhC----------CHhhHHHHHHHhcCc--cHHHHHHHHHHhcCc
Confidence 25667888889999999999999999885 345789999999764 488999999988754
No 64
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.57 E-value=4.7e-14 Score=159.30 Aligned_cols=436 Identities=16% Similarity=0.105 Sum_probs=265.8
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHhccC-hhhH-HHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHH
Q 007104 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVV-NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (618)
Q Consensus 59 v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~-~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (618)
++.++..+...+...+.+..++..|+.++.++... .... .......+++.+..++.+.+. +++..+
T Consensus 170 ~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~------------~vr~~a 237 (876)
T 1qgr_A 170 SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT------------RVRVAA 237 (876)
T ss_dssp HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSH------------HHHHHH
T ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCH------------HHHHHH
Confidence 34444445444433322456888999999988752 2111 111111256777777655444 899999
Q ss_pred HHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCch-----------------
Q 007104 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS----------------- 198 (618)
Q Consensus 137 ~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~----------------- 198 (618)
+++|..++ ..+..-...+...+++.++..+.+.+. +++..++.++.+++.....
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 309 (876)
T 1qgr_A 238 LQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDID--------EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEH 309 (876)
T ss_dssp HHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSS
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCch--------HHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccc
Confidence 99999999 444432223333667777777655443 8899999999888863210
Q ss_pred -hhHHH--HhcCChHHHHHhhc-------CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHH
Q 007104 199 -IKTRV--RMEGGIPPLVELLE-------FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 268 (618)
Q Consensus 199 -~~~~~--~~~~~i~~L~~ll~-------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~ 268 (618)
..... .-...++.++..+. +.++.+|..+..+|..++...++ .+. ..+++.+...+.+++..+|..
T Consensus 310 ~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~~l~~l~~~l~~~~~~~r~~ 385 (876)
T 1qgr_A 310 TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDA 385 (876)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHTTCSSHHHHHH
T ss_pred hhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhH-HHHHHHHHHHccCCChHHHHH
Confidence 00000 01234566777764 23578999999999998863221 222 235666777788899999999
Q ss_pred HHHHHHHHhcCCh-hHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhH-HHHHhcCChHHHHHhhCCCC
Q 007104 269 AVGVIGNLVHSSP-NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK-VHIVQRGAVRPLIEMLQSPD 346 (618)
Q Consensus 269 a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-~~l~~~~~~~~L~~lL~~~~ 346 (618)
++++++.++.+.. ...... -..+++.++..+.+.++.++..+++++++++...+... ..-.-..+++.++..+.++
T Consensus 386 a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~- 463 (876)
T 1qgr_A 386 AVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE- 463 (876)
T ss_dssp HHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-
T ss_pred HHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-
Confidence 9999999987643 322222 24478899999999999999999999999985433210 0001124577888888775
Q ss_pred HHHHHHHHHHHHHhhcCCC------------cchhh--HhcCCHHHHHHhhcCC---ChhHHHHHHHHHHHhhcCCcc-h
Q 007104 347 VQLREMSAFALGRLAQDMH------------NQAGI--AHNGGLVPLLKLLDSK---NGSLQHNAAFALYGLADNEDN-V 408 (618)
Q Consensus 347 ~~v~~~a~~~L~~l~~~~~------------~~~~l--~~~~~l~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~-~ 408 (618)
+.++..++++|.+++.... ....+ .-...++.|..++... +..++..+..++..++..... .
T Consensus 464 ~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~ 543 (876)
T 1qgr_A 464 PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDC 543 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTT
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhh
Confidence 8999999999999986321 00011 1123566677777654 457888889999888754321 1
Q ss_pred hHHHhhcccccccccchh----------------hhhHHHHHHHHHHHHH--------HHHhhhhHHHHHHHHhhCC--H
Q 007104 409 ADFIRVGGVQKLQDGEFI----------------VQATKDCVAKTLKRLE--------EKIHGRVLNHLLYLMRVAE--K 462 (618)
Q Consensus 409 ~~l~~~~~~~~L~~~~~~----------------~~~~~~~~~~~~~~~~--------~~~~~~~l~~L~~ll~~~~--~ 462 (618)
..+. ...++.++..... ....+..+...+..+. ..+...+++.++.++++.+ +
T Consensus 544 ~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 622 (876)
T 1qgr_A 544 YPAV-QKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSG 622 (876)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CC
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCC
Confidence 1111 1122222211000 0111222222222221 1123567788888888764 4
Q ss_pred hHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhcCC-ChhhhhhHHHHHHHhhhhhc
Q 007104 463 GVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGST-NPKQQLDGAVALFKLANKAT 521 (618)
Q Consensus 463 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~ 521 (618)
.++..++.++..++........-+-...++.|...+.+. ++.+|..|++++..|++...
T Consensus 623 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 682 (876)
T 1qgr_A 623 GVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ 682 (876)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG
T ss_pred CccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH
Confidence 789999999999875432222111234678888888876 89999999999999988653
No 65
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.57 E-value=5.1e-13 Score=150.50 Aligned_cols=434 Identities=14% Similarity=0.094 Sum_probs=268.7
Q ss_pred HHHHHHhhccccchHHhHHHHHHHHHHHHHhcc-ChhhH-HHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHH
Q 007104 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVV-NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (618)
Q Consensus 60 ~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~-~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (618)
+.+++.+...+...+.+..++..|+.++..+.. -.... ........++.|...+.+.+. ++|..++
T Consensus 178 ~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~------------~~r~~a~ 245 (861)
T 2bpt_A 178 NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDI------------EVQAAAF 245 (861)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCH------------HHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCH------------HHHHHHH
Confidence 334444443333322256789999999988754 11110 000111246667777765554 9999999
Q ss_pred HHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCch-----------------h
Q 007104 138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS-----------------I 199 (618)
Q Consensus 138 ~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~-----------------~ 199 (618)
.+|..++ ..++.-...+....++.+...+.+.+. +++..++.++..++..... .
T Consensus 246 ~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--------~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 317 (861)
T 2bpt_A 246 GCLCKIMSKYYTFMKPYMEQALYALTIATMKSPND--------KVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNF 317 (861)
T ss_dssp HHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSH--------HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH--------HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHH
Confidence 9999998 333221111111455556666655433 8999999999988864211 0
Q ss_pred hHHHHhcCChHHHHHhhcC-------CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHH
Q 007104 200 KTRVRMEGGIPPLVELLEF-------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGV 272 (618)
Q Consensus 200 ~~~~~~~~~i~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~ 272 (618)
..... ...++.++..+.. +++.++..+..+|..++...+ ..+. ..+++.+...+++.+..++..++++
T Consensus 318 ~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~---~~~~-~~l~~~l~~~l~~~~~~~r~~a~~~ 392 (861)
T 2bpt_A 318 ALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG---NHIL-EPVLEFVEQNITADNWRNREAAVMA 392 (861)
T ss_dssp HHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG---GGGH-HHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc---HhHH-HHHHHHHHHHcCCCChhHHHHHHHH
Confidence 01111 3456777777764 236899999999999886322 1111 1346667777788899999999999
Q ss_pred HHHHhcCCh-hHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhH-HHHHhcCChHHHHHhhCCCCHHHH
Q 007104 273 IGNLVHSSP-NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK-VHIVQRGAVRPLIEMLQSPDVQLR 350 (618)
Q Consensus 273 L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-~~l~~~~~~~~L~~lL~~~~~~v~ 350 (618)
++.++.+.. ......+ ..+++.++..+.+.++.++..+++++++++....... ..-.-..+++.++..+.++ +.++
T Consensus 393 l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~ 470 (861)
T 2bpt_A 393 FGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVA 470 (861)
T ss_dssp HHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHH
T ss_pred HHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHH
Confidence 999987642 2222222 2478889999999999999999999999974311100 0001123577888888776 9999
Q ss_pred HHHHHHHHHhhcCCCc--chhh--HhcCCHHHHHHhhcCC--ChhHHHHHHHHHHHhhcCCcc-hhHHHhhccccccccc
Q 007104 351 EMSAFALGRLAQDMHN--QAGI--AHNGGLVPLLKLLDSK--NGSLQHNAAFALYGLADNEDN-VADFIRVGGVQKLQDG 423 (618)
Q Consensus 351 ~~a~~~L~~l~~~~~~--~~~l--~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~-~~~l~~~~~~~~L~~~ 423 (618)
..+++++.+++..... ...+ .-...++.|++++.+. ++.++..++.++..++..... ....+. ..++.+.+.
T Consensus 471 ~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~ 549 (861)
T 2bpt_A 471 TNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDK 549 (861)
T ss_dssp HHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHH
Confidence 9999999999864210 1111 1123466778888754 378999999999999744322 111111 122222221
Q ss_pred chh----------------hhhHHHHHHHHHHHHHHH-------HhhhhHHHHHHHHhhCCH-hHHHHHHHHHHhhcCCC
Q 007104 424 EFI----------------VQATKDCVAKTLKRLEEK-------IHGRVLNHLLYLMRVAEK-GVQRRVALALAHLCSPD 479 (618)
Q Consensus 424 ~~~----------------~~~~~~~~~~~~~~~~~~-------~~~~~l~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~ 479 (618)
... ....+..+...+..+... +...+++.++..+.+.+. .++..++.++..++...
T Consensus 550 l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~ 629 (861)
T 2bpt_A 550 LGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASL 629 (861)
T ss_dssp HHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHH
Confidence 110 111222233333333332 234677888888888877 89999999999987543
Q ss_pred ccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhhhc
Q 007104 480 DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (618)
Q Consensus 480 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (618)
......+-...+|.|...+.++++.++..++.++..+++...
T Consensus 630 ~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~ 671 (861)
T 2bpt_A 630 GKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLE 671 (861)
T ss_dssp GGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG
T ss_pred hhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc
Confidence 322221233478888888888889999999999999988643
No 66
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.56 E-value=3.2e-13 Score=144.24 Aligned_cols=390 Identities=15% Similarity=0.106 Sum_probs=264.9
Q ss_pred hHHHHHHHHHHHHHhcc-ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHH
Q 007104 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (618)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 154 (618)
+..++..+.-.+..++. +++.. .-++..|.+-|++++. .+|..|+++|+++. .++....
T Consensus 62 ~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~n~------------~ir~~AL~~L~~i~-~~~~~~~-- 121 (591)
T 2vgl_B 62 NLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDPNP------------LIRALAVRTMGCIR-VDKITEY-- 121 (591)
T ss_dssp CHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSSSH------------HHHHHHHHHHHTCC-SGGGHHH--
T ss_pred CHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCCCH------------HHHHHHHHHHHcCC-hHHHHHH--
Confidence 45556666666666666 44442 2235677777777665 89999999999987 4443332
Q ss_pred hCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 007104 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (618)
Q Consensus 155 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 234 (618)
.++.+..+|.+.+. .++..|+.++.+++..+++. +...++++.+..++.++++.|+..|+.+|..+
T Consensus 122 ---l~~~l~~~L~d~~~--------~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i 187 (591)
T 2vgl_B 122 ---LCEPLRKCLKDEDP--------YVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEI 187 (591)
T ss_dssp ---HHHHHHHHSSCSCH--------HHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHcCCCCh--------HHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 35778888876554 99999999999999866653 22346789999999999999999999999999
Q ss_pred hcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHH
Q 007104 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (618)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~ 314 (618)
+..+++........+.+..|+..+.+.++-.+...++++..++..++... ..+++.+..++++.++.++.+|+++
T Consensus 188 ~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~ 262 (591)
T 2vgl_B 188 SESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKV 262 (591)
T ss_dssp TTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHH
T ss_pred HhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHH
Confidence 97554331111112346677777778888888889999988865544322 2357788888999999999999999
Q ss_pred HHHHhcC---ChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHH
Q 007104 315 LGQFAAT---DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQ 391 (618)
Q Consensus 315 L~~l~~~---~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 391 (618)
+..+... +++....+ -..+.+.|+.++ ++++.+|..++.+|..++...+.. +.. .+..+. .+.+.+..++
T Consensus 263 i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~---~~~-~~~~~~-~~~~d~~~Ir 335 (591)
T 2vgl_B 263 LMKFLELLPKDSDYYNML-LKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEI---LKQ-EIKVFF-VKYNDPIYVK 335 (591)
T ss_dssp HHHSCCSCCBTTBSHHHH-HHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCST---TTT-CTTTTS-CCTTSCHHHH
T ss_pred HHHHhhccCCCHHHHHHH-HHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHH---HHH-HHHhhe-eccCChHHHH
Confidence 9998632 23333322 234667777665 488999999999999998643221 111 111222 2224458999
Q ss_pred HHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHH---HhhhhHHHHHHHHhhCCHhHHHHH
Q 007104 392 HNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK---IHGRVLNHLLYLMRVAEKGVQRRV 468 (618)
Q Consensus 392 ~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~L~~ll~~~~~~v~~~a 468 (618)
..++.+|.+++. +.+...++.. ..+.+.+. ....+..+...+..+... ....+++.|+.++.+.+..++..+
T Consensus 336 ~~al~~L~~l~~-~~nv~~iv~~-L~~~l~~~---d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~ 410 (591)
T 2vgl_B 336 LEKLDIMIRLAS-QANIAQVLAE-LKEYATEV---DVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEA 410 (591)
T ss_dssp HHHHHHHHHTCC-SSTHHHHHHH-HHHHTTSS---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHCC-hhhHHHHHHH-HHHHHhcC---CHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHH
Confidence 999999999884 3444443331 11111111 112233333333333322 246788999999999999999999
Q ss_pred HHHHHhhcCCCccccceecCCchHHHHHHhcC-CChhhhhhHHHHHHHhhhhh
Q 007104 469 ALALAHLCSPDDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAVALFKLANKA 520 (618)
Q Consensus 469 ~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~ 520 (618)
+.++..+...... ....+++.|.+.+.+ ..+.++..++|+|...+...
T Consensus 411 i~~l~~ii~~~p~----~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~ 459 (591)
T 2vgl_B 411 IVVIRDIFRKYPN----KYESIIATLCENLDSLDEPDARAAMIWIVGEYAERI 459 (591)
T ss_dssp HHHHHHHHHHSCS----SCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHCcc----hHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccc
Confidence 9999988643221 147789999999874 67889999999998887664
No 67
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.56 E-value=1.5e-13 Score=146.90 Aligned_cols=397 Identities=16% Similarity=0.125 Sum_probs=261.2
Q ss_pred HHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHH
Q 007104 63 VNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGL 142 (618)
Q Consensus 63 ~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~ 142 (618)
+..+...+. ++++.++..|+++|+++. +++.... .+|.+.++|.+++. .||..|+.++.+
T Consensus 88 ~n~l~kdL~--~~n~~ir~~AL~~L~~i~-~~~~~~~-----l~~~l~~~L~d~~~------------~VRk~A~~al~~ 147 (591)
T 2vgl_B 88 VNSFVKDCE--DPNPLIRALAVRTMGCIR-VDKITEY-----LCEPLRKCLKDEDP------------YVRKTAAVCVAK 147 (591)
T ss_dssp HHHHGGGSS--SSSHHHHHHHHHHHHTCC-SGGGHHH-----HHHHHHHHSSCSCH------------HHHHHHHHHHHH
T ss_pred HHHHHHHcC--CCCHHHHHHHHHHHHcCC-hHHHHHH-----HHHHHHHHcCCCCh------------HHHHHHHHHHHH
Confidence 334444443 346678888888888776 3443333 36788899987665 999999999999
Q ss_pred hc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCH
Q 007104 143 LA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDT 221 (618)
Q Consensus 143 l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~ 221 (618)
+. .+++.. .+.+.++.+..+|.+.+. .++..|+.+|..++..++.........+.+..|+..+.+.++
T Consensus 148 i~~~~p~~~---~~~~~~~~l~~lL~d~d~--------~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~ 216 (591)
T 2vgl_B 148 LHDINAQMV---EDQGFLDSLRDLIADSNP--------MVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTE 216 (591)
T ss_dssp HHHSSCCCH---HHHHHHHHHHHTTSCSCH--------HHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCH
T ss_pred HHhhChhhc---ccccHHHHHHHHhCCCCh--------hHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCc
Confidence 99 566532 224678899999986654 899999999999998766431000012235667777777888
Q ss_pred HHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC---ChhHHHHHHhcCCHHHHHH
Q 007104 222 KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS---SPNIKKEVLAAGALQPVIG 298 (618)
Q Consensus 222 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~l~~L~~ 298 (618)
-.+...+.++..++..++... ..+++.+..++++.++.|+..|++++..+... +++..+.+ ...+.+.|+.
T Consensus 217 ~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~~ 290 (591)
T 2vgl_B 217 WGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLVT 290 (591)
T ss_dssp HHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHHH
T ss_pred hHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHHH
Confidence 888888888888874322221 23567788888999999999999999998642 23332322 2345677777
Q ss_pred hhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHH
Q 007104 299 LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP 378 (618)
Q Consensus 299 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~ 378 (618)
++. +++.++..++.+|..+....+.... . .+..+. .+.+.+..+|..++..+.+++... +-. ..++.
T Consensus 291 L~~-~d~~vr~~aL~~l~~i~~~~p~~~~----~-~~~~~~-~~~~d~~~Ir~~al~~L~~l~~~~-nv~-----~iv~~ 357 (591)
T 2vgl_B 291 LLS-GEPEVQYVALRNINLIVQKRPEILK----Q-EIKVFF-VKYNDPIYVKLEKLDIMIRLASQA-NIA-----QVLAE 357 (591)
T ss_dssp HTT-SCHHHHHHHHHHHHHHHHHCCSTTT----T-CTTTTS-CCTTSCHHHHHHHHHHHHHTCCSS-THH-----HHHHH
T ss_pred Hhc-CCccHHHHHHHHHHHHHHhChHHHH----H-HHHhhe-eccCChHHHHHHHHHHHHHHCChh-hHH-----HHHHH
Confidence 664 7789999999999999754443211 1 111121 222445899999999999988543 221 24566
Q ss_pred HHHhhcCCChhHHHHHHHHHHHhhcCCc-chhHHHhhcccccccccchh-h-hhHHHHHHHHHHHHHHHH---hhhhHHH
Q 007104 379 LLKLLDSKNGSLQHNAAFALYGLADNED-NVADFIRVGGVQKLQDGEFI-V-QATKDCVAKTLKRLEEKI---HGRVLNH 452 (618)
Q Consensus 379 L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~l~~~~~~~~L~~~~~~-~-~~~~~~~~~~~~~~~~~~---~~~~l~~ 452 (618)
|...+.+.+.+++..++.+++.++..-. .... .++.|.+.... . ....++ ...+..+.... ...+++.
T Consensus 358 L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~-----~v~~Ll~ll~~~~~~v~~e~-i~~l~~ii~~~p~~~~~~v~~ 431 (591)
T 2vgl_B 358 LKEYATEVDVDFVRKAVRAIGRCAIKVEQSAER-----CVSTLLDLIQTKVNYVVQEA-IVVIRDIFRKYPNKYESIIAT 431 (591)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHH-----HHHHHHHHHHTCCHHHHHHH-HHHHHHHHHHSCSSCCTTHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHH-----HHHHHHHHHcccchHHHHHH-HHHHHHHHHHCcchHHHHHHH
Confidence 7788888899999999999999985432 1122 22333221110 0 111111 12233332222 3567888
Q ss_pred HHHHHhh-CCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhhh
Q 007104 453 LLYLMRV-AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (618)
Q Consensus 453 L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (618)
|...+.+ .++.++..++|+|+..+...... ...+..+++.+...++.+|..++.++..+....
T Consensus 432 L~~~l~~~~~~~~~~~~~wilGey~~~~~~~-----~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~ 495 (591)
T 2vgl_B 432 LCENLDSLDEPDARAAMIWIVGEYAERIDNA-----DELLESFLEGFHDESTQVQLTLLTAIVKLFLKK 495 (591)
T ss_dssp HHHTTTTCCSHHHHHHHHHHHHTTCTTCTTH-----HHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccCHHHHHHHHHHHHcccccccCH-----HHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC
Confidence 8888875 47899999999999997654321 234444444444578899999999999998763
No 68
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.55 E-value=2.5e-15 Score=142.22 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=62.8
Q ss_pred HhhhcCCCcccEEEEECCeEEehhHHHHhcCCHHHHHhhcCCCC--CCCCCceecCCCCHHHHHHHHHHHhCCccccCC
Q 007104 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYR--EKDARDIEIPNIRWEVFELMMRFDEFCAFNLSS 617 (618)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~--e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~~ 617 (618)
+.+++++.++||++.++|+.|+|||.||+++|+||++||.+++. |+....|.++++++++|+.+++|+|||++.+++
T Consensus 23 ~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~i~~ 101 (256)
T 3hve_A 23 SSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNE 101 (256)
T ss_dssp HTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCCCCC-
T ss_pred HHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCCcccH
Confidence 67889999999999999999999999999999999999999887 677789999999999999999999999998875
No 69
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.54 E-value=3.3e-15 Score=121.98 Aligned_cols=66 Identities=18% Similarity=0.128 Sum_probs=60.1
Q ss_pred hhcCCCcccEEEEECCeEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhCCccccCC
Q 007104 543 FVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFDEFCAFNLSS 617 (618)
Q Consensus 543 ~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~~ 617 (618)
.+.++.+|||++.++|+.|+|||.||+++|+||++ ....|.++++++++|+.+|+|+|||++.+++
T Consensus 24 ~r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~---------~~~~i~l~~v~~~~f~~ll~fiYtg~~~i~~ 89 (119)
T 3m5b_A 24 ARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR---------RGQWALGEGISPSTFAQLLNFVYGESVELQP 89 (119)
T ss_dssp HHHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC---------CEEEECCSSCCHHHHHHHHHHHTTCCEEECG
T ss_pred HHhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc---------CCCEEEeCCCCHHHHHHHHHHHcCCCcCcCH
Confidence 36778999999999999999999999999999985 3467899999999999999999999998864
No 70
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.52 E-value=4.4e-13 Score=151.06 Aligned_cols=428 Identities=11% Similarity=0.083 Sum_probs=264.3
Q ss_pred HHHHHHhhccccchHHhHHHHHHHHHHHHHhccCh--hhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHH
Q 007104 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNE--EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (618)
Q Consensus 60 ~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (618)
+.+++.+...+.. .+...+..|+.++..++.+. +...... ..+++.|++.+.+++. .+|..++
T Consensus 368 ~~l~~~l~~~l~~--~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~------------~vr~~a~ 432 (861)
T 2bpt_A 368 EPVLEFVEQNITA--DNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSL------------QVKETTA 432 (861)
T ss_dssp HHHHHHHHHHTTC--SSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCH------------HHHHHHH
T ss_pred HHHHHHHHHHcCC--CChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcH------------HHHHHHH
Confidence 4455555444432 24557889999999999742 3322222 2478888998887655 9999999
Q ss_pred HHHHHhcCC--hhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCc-----hhhHHHHhcCChH
Q 007104 138 FALGLLAVK--PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-----SIKTRVRMEGGIP 210 (618)
Q Consensus 138 ~~L~~l~~~--~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~-----~~~~~~~~~~~i~ 210 (618)
++|+.++.. +.....-.-...++.++..+.+. . .++..++++|.+++.... .....+ ...++
T Consensus 433 ~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~--------~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~ 501 (861)
T 2bpt_A 433 WCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-P--------KVATNCSWTIINLVEQLAEATPSPIYNFY--PALVD 501 (861)
T ss_dssp HHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-H--------HHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHH
T ss_pred HHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-h--------HHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHH
Confidence 999999821 11000000113467777777553 2 899999999999987421 111111 23567
Q ss_pred HHHHhhcCCC--HHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcC---------------CCHHHHHHHHHHH
Q 007104 211 PLVELLEFTD--TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS---------------EDSAIHYEAVGVI 273 (618)
Q Consensus 211 ~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~---------------~~~~v~~~a~~~L 273 (618)
.++..+.+.+ +.++..++.++..++...+........ .+++.++..+.. ....++..++.+|
T Consensus 502 ~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 580 (861)
T 2bpt_A 502 GLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVL 580 (861)
T ss_dssp HHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHH
Confidence 7888887544 789999999999998754433222222 356666666542 1346788899999
Q ss_pred HHHhcCChhHHHHHHhcCCHHHHHHhhcCCCh-hHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHH
Q 007104 274 GNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS-ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREM 352 (618)
Q Consensus 274 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~ 352 (618)
.+++...+...... ...+++.+..++.+.+. .++..++.+++.++........... ..+++.++..+.++++.++..
T Consensus 581 ~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~vr~~ 658 (861)
T 2bpt_A 581 AAVIRKSPSSVEPV-ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQVDSPVSIT 658 (861)
T ss_dssp HHHHHHCGGGTGGG-HHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHhhhhhHHH-HHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccccHHHHHH
Confidence 99876544311111 12366778888888776 8899999999988743222111111 347888888888888899999
Q ss_pred HHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCC--hhHHHHHHHHHHHhhcCC-cchhHHHhhcccccccccch----
Q 007104 353 SAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN--GSLQHNAAFALYGLADNE-DNVADFIRVGGVQKLQDGEF---- 425 (618)
Q Consensus 353 a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~-~~~~~l~~~~~~~~L~~~~~---- 425 (618)
++.++..++......-.-.-...++.+.+.+.+.+ ..++..++.++..++... +....+. ...++.+.....
T Consensus 659 a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l-~~~l~~l~~~~~~~~~ 737 (861)
T 2bpt_A 659 AVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYL-NDIMALCVAAQNTKPE 737 (861)
T ss_dssp HHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHhcCCC
Confidence 99999999864332211122345666777777654 889999999999997532 2221111 122333222110
Q ss_pred --------hhhhHHHHHHHHHHHHHHH----------HhhhhHHHHHHHHhhC----CHhHHHHHHHHHHhhcC---CCc
Q 007104 426 --------IVQATKDCVAKTLKRLEEK----------IHGRVLNHLLYLMRVA----EKGVQRRVALALAHLCS---PDD 480 (618)
Q Consensus 426 --------~~~~~~~~~~~~~~~~~~~----------~~~~~l~~L~~ll~~~----~~~v~~~a~~~L~~l~~---~~~ 480 (618)
....++....+.+..+... +-..+++.+...+.+. +..++..|+.+++.++. ++.
T Consensus 738 ~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~ 817 (861)
T 2bpt_A 738 NGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGS 817 (861)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTST
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCch
Confidence 0112233333333222211 1234455555555553 78999999999999974 332
Q ss_pred cccceecCCchHHHHHHhc---CCChhhhhhHHHHHHHhhh
Q 007104 481 QRTIFIDGGGLELLLGLLG---STNPKQQLDGAVALFKLAN 518 (618)
Q Consensus 481 ~~~~~~~~~~l~~L~~ll~---~~~~~v~~~a~~~L~~L~~ 518 (618)
.. .+.....++.|++.+. +.+..++..|.|++..+.+
T Consensus 818 ~~-~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 818 IK-QFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKR 857 (861)
T ss_dssp TG-GGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred HH-HHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 22 2223357888888776 4667899999999998875
No 71
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.50 E-value=1.9e-14 Score=140.67 Aligned_cols=85 Identities=31% Similarity=0.370 Sum_probs=72.5
Q ss_pred CCCCcccchhHhhhcCCCcccEEEEECCeEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhC
Q 007104 531 PSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFDEF 610 (618)
Q Consensus 531 ~~~~~~~~l~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt 610 (618)
|++++..++. .+++++.++||+|.++|+.|+|||.||+++|+||++||.++|.|+...+|.++++++++|+.+|+|+||
T Consensus 157 p~~~l~~~l~-~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt 235 (312)
T 3hqi_A 157 PECRLADELG-GLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYT 235 (312)
T ss_dssp CCCCHHHHHH-HHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHH
T ss_pred CCchHHHHHH-HHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcC
Confidence 4456666664 677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccC
Q 007104 611 CAFNLS 616 (618)
Q Consensus 611 ~~~~~~ 616 (618)
|++.++
T Consensus 236 ~~~~~~ 241 (312)
T 3hqi_A 236 GKAPNL 241 (312)
T ss_dssp SCCTTH
T ss_pred CCCCCh
Confidence 998753
No 72
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.49 E-value=5.4e-15 Score=141.78 Aligned_cols=78 Identities=21% Similarity=0.368 Sum_probs=65.0
Q ss_pred hHhhhcCCCcccEEEEEC---CeEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceecC------CCCHHHHHHHHHHHhC
Q 007104 540 GDQFVNNATLSDVTFLVE---GRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP------NIRWEVFELMMRFDEF 610 (618)
Q Consensus 540 ~~~~~~~~~~~Dv~~~~~---~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~~------~~~~~~~~~~l~~~Yt 610 (618)
.+.++.++.++||++.++ |+.|+|||.||+++|+||++||.++|+|+....|.++ ++++++|+.+++|+||
T Consensus 23 l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Yt 102 (279)
T 3i3n_A 23 QNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYT 102 (279)
T ss_dssp HHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCc
Confidence 367889999999999998 8999999999999999999999999999999999998 8999999999999999
Q ss_pred CccccCC
Q 007104 611 CAFNLSS 617 (618)
Q Consensus 611 ~~~~~~~ 617 (618)
|++.++.
T Consensus 103 g~~~i~~ 109 (279)
T 3i3n_A 103 GRIRVST 109 (279)
T ss_dssp SEEEEET
T ss_pred CCcccCH
Confidence 9998764
No 73
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.48 E-value=1.4e-12 Score=147.22 Aligned_cols=386 Identities=12% Similarity=0.070 Sum_probs=254.5
Q ss_pred hHHHHHHHHHHHHHhcc-ChhhH-----HHH------HhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHh
Q 007104 76 DRAAAKRATHVLAELAK-NEEVV-----NWI------VEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLL 143 (618)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~-----~~~------~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l 143 (618)
+..++..|+..|.+... ..+.+ ... ....+.+.|++.|.+.+. .+ ..++.+++.+
T Consensus 50 ~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~------------~~-~~~~~~l~~i 116 (876)
T 1qgr_A 50 SQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETY------------RP-SSASQCVAGI 116 (876)
T ss_dssp CHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCS------------SS-CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcH------------HH-HHHHHHHHHH
Confidence 56688889999998654 21110 000 011123347788876655 66 7888899888
Q ss_pred cCChhhHHHHHhCCcHHHHHHHHhhc--cCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCC--
Q 007104 144 AVKPEHQQLIVDNGALSHLVNLLKRH--MDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-- 219 (618)
Q Consensus 144 ~~~~~~~~~~~~~g~l~~L~~lL~~~--~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~-- 219 (618)
+....... .-...++.++..+.+. +. .++..++.+|..++.........-.....++.+...+.++
T Consensus 117 ~~~~~~~~--~w~~ll~~l~~~l~~~~~~~--------~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~ 186 (876)
T 1qgr_A 117 ACAEIPVN--QWPELIPQLVANVTNPNSTE--------HMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP 186 (876)
T ss_dssp HHHHGGGT--CCTTHHHHHHHHHHCTTCCH--------HHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCS
T ss_pred HHhhCccc--ccHHHHHHHHHHHhCCCCCH--------HHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCC
Confidence 82211000 1235688888888765 33 8899999999999975321100000123456777778776
Q ss_pred CHHHHHHHHHHHHHhhcCCcccHH-HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHH
Q 007104 220 DTKVQRAAAGALRTLAFKNDENKN-QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 298 (618)
Q Consensus 220 ~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 298 (618)
+..+|..++.++..++..-..... ......+++.+...+.+.+.+++..++.+|..++...+......+...+++.+..
T Consensus 187 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~ 266 (876)
T 1qgr_A 187 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE 266 (876)
T ss_dssp CHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 689999999999998753221110 0111125677777788889999999999999998765543333333467888888
Q ss_pred hhcCCChhHHHHHHHHHHHHhcCChh---------------------hHHHHHhcCChHHHHHhhC-------CCCHHHH
Q 007104 299 LLSSCCSESQREAALLLGQFAATDSD---------------------CKVHIVQRGAVRPLIEMLQ-------SPDVQLR 350 (618)
Q Consensus 299 ll~~~~~~~~~~a~~~L~~l~~~~~~---------------------~~~~l~~~~~~~~L~~lL~-------~~~~~v~ 350 (618)
.+.+.+..++..++..+.+++..... ..... -..+++.++..+. +.+..+|
T Consensus 267 ~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ll~~ll~~l~~~~~d~~~~~~~~r 345 (876)
T 1qgr_A 267 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA-LQYLVPILTQTLTKQDENDDDDDWNPC 345 (876)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHH-HHHHHHHHHHHTTCCCSSCCTTCCCHH
T ss_pred HhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHH-HHHHhHHHHHHhhcccccccccccHHH
Confidence 88888888999999888888642110 00000 1235677777775 2356789
Q ss_pred HHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhH
Q 007104 351 EMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQAT 430 (618)
Q Consensus 351 ~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~ 430 (618)
..+..+|..++..... .+ -...++.+...+.+.++.+|..++.+|..++.+... ..+ .
T Consensus 346 ~~a~~~l~~l~~~~~~--~~-~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~-~~~-~----------------- 403 (876)
T 1qgr_A 346 KAAGVCLMLLATCCED--DI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP-SQL-K----------------- 403 (876)
T ss_dssp HHHHHHHHHHHHHHGG--GG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH-HHH-H-----------------
T ss_pred HHHHHHHHHHHHHCcH--hh-HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCH-HHH-H-----------------
Confidence 9999999998864321 12 123455667778889999999999999999865321 000 0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccc--cceecCCchHHHHHHhcCCChhhhhh
Q 007104 431 KDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR--TIFIDGGGLELLLGLLGSTNPKQQLD 508 (618)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~~l~~L~~ll~~~~~~v~~~ 508 (618)
.....+++.++..+.++++.+|..|+++|++++...... ..-.-...++.|+..+.++ +.++..
T Consensus 404 -------------~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~ 469 (876)
T 1qgr_A 404 -------------PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASN 469 (876)
T ss_dssp -------------HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHH
T ss_pred -------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHH
Confidence 012357888999999999999999999999997543211 0011235678888888775 899999
Q ss_pred HHHHHHHhhhhhc
Q 007104 509 GAVALFKLANKAT 521 (618)
Q Consensus 509 a~~~L~~L~~~~~ 521 (618)
|+++|.+++....
T Consensus 470 a~~al~~l~~~~~ 482 (876)
T 1qgr_A 470 VCWAFSSLAEAAY 482 (876)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998753
No 74
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.48 E-value=1.3e-12 Score=120.10 Aligned_cols=190 Identities=23% Similarity=0.246 Sum_probs=158.8
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHH
Q 007104 248 CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 327 (618)
Q Consensus 248 ~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 327 (618)
.+.++.|+..|+++++.++..|++.|+.+.. .+.++.|+.++.+.++.++..++.+|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 4678999999999999999999999998832 2468899999999999999999999999842
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcc
Q 007104 328 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 407 (618)
Q Consensus 328 ~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 407 (618)
.+.++.|+.+|.++++.+|..++++|+++.. ...++.|+.++.++++.++..|+.+|.++...
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--- 142 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE--- 142 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG---
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH---
Confidence 2468899999999999999999999999853 24678899999999999999999999998421
Q ss_pred hhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceec
Q 007104 408 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID 487 (618)
Q Consensus 408 ~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 487 (618)
..++.|..++.++++.++..++.+|..+..
T Consensus 143 ----------------------------------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------- 172 (211)
T 3ltm_A 143 ----------------------------------------RAVEPLIKALKDEDGWVRQSAADALGEIGG---------- 172 (211)
T ss_dssp ----------------------------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------
T ss_pred ----------------------------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------
Confidence 245668888999999999999999999842
Q ss_pred CCchHHHHHHhcCCChhhhhhHHHHHHHhhhhhcc
Q 007104 488 GGGLELLLGLLGSTNPKQQLDGAVALFKLANKATT 522 (618)
Q Consensus 488 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 522 (618)
..+++.|..++.++++.+|..|..+|.++..+...
T Consensus 173 ~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~ 207 (211)
T 3ltm_A 173 ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNHH 207 (211)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHC-------
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCC
Confidence 45788999999999999999999999999887543
No 75
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.47 E-value=5.1e-12 Score=135.38 Aligned_cols=273 Identities=18% Similarity=0.178 Sum_probs=185.1
Q ss_pred hHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHHH
Q 007104 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIV 154 (618)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~ 154 (618)
++.++..|+++|+++.. ++.. ...++.+..+|.+.++ .||..|+.++.++. .+|+..
T Consensus 120 n~~vr~lAL~~L~~i~~-~~~~-----~~l~~~l~~~L~~~~~------------~VRk~A~~al~~l~~~~p~~v---- 177 (618)
T 1w63_A 120 TQFVQGLALCTLGCMGS-SEMC-----RDLAGEVEKLLKTSNS------------YLRKKAALCAVHVIRKVPELM---- 177 (618)
T ss_dssp SSHHHHHHHHHHHHHCC-HHHH-----HHHHHHHHHHHHSCCH------------HHHHHHHHHHHHHHHHCGGGG----
T ss_pred CHhHHHHHHHHHHhcCC-HHHH-----HHHHHHHHHHHcCCCH------------HHHHHHHHHHHHHHHHChHHH----
Confidence 55678888899988874 3322 2457888899988766 99999999999999 666543
Q ss_pred hCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcC---------------C
Q 007104 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF---------------T 219 (618)
Q Consensus 155 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~---------------~ 219 (618)
.+.++.+..+|.+.+. .++..|+.+|..++..+++....+ ...++.++.+|.+ .
T Consensus 178 -~~~~~~l~~lL~D~d~--------~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~ 246 (618)
T 1w63_A 178 -EMFLPATKNLLNEKNH--------GVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGIS 246 (618)
T ss_dssp -GGGGGGTTTSTTCCCH--------HHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSS
T ss_pred -HHHHHHHHHHhCCCCH--------hHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCC
Confidence 2567777778876654 899999999999997655432222 3567888877653 4
Q ss_pred CHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhc------CCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCH
Q 007104 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (618)
Q Consensus 220 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l 293 (618)
++-.+...+.+|..++..++... ....+.|..+++ +.+..+...|++++..+.. .+.... .++
T Consensus 247 ~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~-~~~l~~-----~a~ 315 (618)
T 1w63_A 247 DPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS-ESGLRV-----LAI 315 (618)
T ss_dssp CHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC-CHHHHH-----HHH
T ss_pred CChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC-CHHHHH-----HHH
Confidence 78888889999999986543322 223444555543 2345777888888877633 222111 245
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhc
Q 007104 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHN 373 (618)
Q Consensus 294 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~ 373 (618)
..|..++.+.++.++..++.+|..++...+.. + ......++.++.+++..+|..++.+|..++.... -..
T Consensus 316 ~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~---~--~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n-v~~---- 385 (618)
T 1w63_A 316 NILGRFLLNNDKNIRYVALTSLLKTVQTDHNA---V--QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN-IRG---- 385 (618)
T ss_dssp HHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHH---H--GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS-THH----
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHhhCHHH---H--HHHHHHHHHHccCCChhHHHHHHHHHHHHccccc-HHH----
Confidence 67777777777788888888888877543321 1 2245677777777788888888888888776432 222
Q ss_pred CCHHHHHHhhcCCChhHHHHHHHHHHHhhc
Q 007104 374 GGLVPLLKLLDSKNGSLQHNAAFALYGLAD 403 (618)
Q Consensus 374 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 403 (618)
.+..|...+.+.+.+++..++.+++.++.
T Consensus 386 -iv~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 386 -MMKELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp -HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 24566666766777777777777777764
No 76
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.46 E-value=5.5e-11 Score=127.40 Aligned_cols=357 Identities=13% Similarity=0.110 Sum_probs=235.0
Q ss_pred CHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHH
Q 007104 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (618)
Q Consensus 105 ~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~ 183 (618)
+....++++.+++. ..++.+--.+..++ .+++.... ++..+.+-|++.+. .++.
T Consensus 71 ~~~~vik~~~s~~~------------~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL~~~n~--------~vr~ 125 (618)
T 1w63_A 71 GQLECLKLIASQKF------------TDKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDLNHSTQ--------FVQG 125 (618)
T ss_dssp GHHHHHHHHHSSSH------------HHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHSCSSS--------HHHH
T ss_pred hHHHHHHHHcCCch------------HHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhcCCCCH--------hHHH
Confidence 44556677776655 78888888888888 55553221 25667777766555 8999
Q ss_pred HHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCH
Q 007104 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 263 (618)
Q Consensus 184 ~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~ 263 (618)
.|+++|+++.. ++ +. ...++.+..++.++++.+|..|+.++.++...+++..+ ++++.+..++.+.++
T Consensus 126 lAL~~L~~i~~--~~----~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~ 193 (618)
T 1w63_A 126 LALCTLGCMGS--SE----MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNH 193 (618)
T ss_dssp HHHHHHHHHCC--HH----HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCH
T ss_pred HHHHHHHhcCC--HH----HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCH
Confidence 99999999984 22 21 34568899999999999999999999999976665432 567778889999999
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcC---------------CChhHHHHHHHHHHHHhcCChhhHHH
Q 007104 264 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS---------------CCSESQREAALLLGQFAATDSDCKVH 328 (618)
Q Consensus 264 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~---------------~~~~~~~~a~~~L~~l~~~~~~~~~~ 328 (618)
.|+..|+.+|..++..+++....+ ...++.++.+|.+ .++-.+..++.+|+.++..++...
T Consensus 194 ~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-- 269 (618)
T 1w63_A 194 GVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-- 269 (618)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH--
T ss_pred hHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH--
Confidence 999999999999987655432222 3578888877653 355577788889999986655432
Q ss_pred HHhcCChHHHHHhhC------CCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 007104 329 IVQRGAVRPLIEMLQ------SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 402 (618)
Q Consensus 329 l~~~~~~~~L~~lL~------~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 402 (618)
..+.+.|..++. +.+..+...+++++.++.... .+. ..++..|..++.++++.++..|+.+|..++
T Consensus 270 ---~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~----~l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~ 341 (618)
T 1w63_A 270 ---EAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSES----GLR-VLAINILGRFLLNNDKNIRYVALTSLLKTV 341 (618)
T ss_dssp ---HTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCH----HHH-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCH----HHH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 234555555542 235678889999998875421 121 235677888899999999999999999998
Q ss_pred cCCcchhHHHhh---cccccccccchhhhhHHHHHHHHHHHHHHHH-hhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCC
Q 007104 403 DNEDNVADFIRV---GGVQKLQDGEFIVQATKDCVAKTLKRLEEKI-HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP 478 (618)
Q Consensus 403 ~~~~~~~~l~~~---~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 478 (618)
...+. ++.. ..+..+.+ ....++....+.+-.+...- -..+++.++..+.+.+.+++..++.+|+.++..
T Consensus 342 ~~~p~---~~~~~~~~i~~~l~d---~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 342 QTDHN---AVQRHRSTIVDCLKD---LDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp HHHHH---HHGGGHHHHHHGGGS---SCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred hhCHH---HHHHHHHHHHHHccC---CChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 54221 1111 11111111 11112222112111111100 134677777888778888888888888888643
Q ss_pred CccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhhh
Q 007104 479 DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (618)
Q Consensus 479 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (618)
.... ....++.|++++......++..+...+..+....
T Consensus 416 ~~~~----~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~ 453 (618)
T 1w63_A 416 YAPS----KRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNS 453 (618)
T ss_dssp SCCC----HHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHS
T ss_pred hCcc----HHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcC
Confidence 2110 1224677778877766677777777777777653
No 77
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.46 E-value=1.1e-12 Score=136.34 Aligned_cols=356 Identities=11% Similarity=0.074 Sum_probs=234.2
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHhccChh--hHH----------HHHhCCCHHHHHHhhcCCCCCccccCCC
Q 007104 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEE--VVN----------WIVEGGAVPALVKHLQAPPTSEADRNLK 126 (618)
Q Consensus 59 v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~--~~~----------~~~~~g~v~~Lv~lL~~~~~~~~~~~~~ 126 (618)
...++.++.+. +.+..++..|+..|.++..... ... .=.+..+-..|++.|.+.+.
T Consensus 37 ~~~L~~il~~~----~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~-------- 104 (462)
T 1ibr_B 37 LVELSRVLANP----GNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETY-------- 104 (462)
T ss_dssp HHHHHHHHHCT----TSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCS--------
T ss_pred HHHHHHHHHcC----CCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCc--------
Confidence 34455555432 2356688999999999875210 000 00112234557788877665
Q ss_pred cchhHHHHHHHHHHHHhcCC--hhhHHHHHhCCcHHHHHHHHhhc--cCCCCcccchHHHHHHHHHHHHhhhcC-chhhH
Q 007104 127 PFEHEVEKGSAFALGLLAVK--PEHQQLIVDNGALSHLVNLLKRH--MDSNCSRAVNSVIRRAADAITNLAHEN-SSIKT 201 (618)
Q Consensus 127 ~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~g~l~~L~~lL~~~--~~~~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~ 201 (618)
.+ ..++.+++.++.. +.. .-.+.++.|+..+.+. +. .++..++.+|..++... +..-.
T Consensus 105 ----~v-~~~~~~i~~ia~~~~~~~----~w~~ll~~L~~~l~~~~~~~--------~~r~~al~~l~~l~~~~~~~~~~ 167 (462)
T 1ibr_B 105 ----RP-SSASQCVAGIACAEIPVN----QWPELIPQLVANVTNPNSTE--------HMKESTLEAIGYICQDIDPEQLQ 167 (462)
T ss_dssp ----SS-CSHHHHHHHHHHHHGGGT----CCTTHHHHHHHHHHCTTCCH--------HHHHHHHHHHHHHHHHSCGGGTG
T ss_pred ----hh-hHHHHHHHHHHHHhcccc----ccHHHHHHHHHHhccCCCCH--------HHHHHHHHHHHHHHHhCCchhhH
Confidence 67 7899999999822 211 1246788999998776 33 88999999999999754 22111
Q ss_pred HHHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCcccHH-HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 007104 202 RVRMEGGIPPLVELLEFT--DTKVQRAAAGALRTLAFKNDENKN-QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (618)
Q Consensus 202 ~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 278 (618)
... ...++.+...+.+. ++.+|..+++++.++...-..... .....-+++.+...+.+++++++..++++|..++.
T Consensus 168 ~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~ 246 (462)
T 1ibr_B 168 DKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMS 246 (462)
T ss_dssp GGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred hHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 111 23568888888887 799999999999987642111110 00111135666677778899999999999999976
Q ss_pred CChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhH-----------------HHHH---hcCChHHH
Q 007104 279 SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK-----------------VHIV---QRGAVRPL 338 (618)
Q Consensus 279 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-----------------~~l~---~~~~~~~L 338 (618)
..+..-...+..++++.++..+.+.+.+++..++..+..++....... ..+. -..+++.+
T Consensus 247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l 326 (462)
T 1ibr_B 247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 326 (462)
T ss_dssp HCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHH
Confidence 554321111111567778888888889999999998888874310000 0000 13356777
Q ss_pred HHhhCC-------CCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHH
Q 007104 339 IEMLQS-------PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF 411 (618)
Q Consensus 339 ~~lL~~-------~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l 411 (618)
+..+.. .+..+|..++.+|..++..... .+ -...++.+...+.+.++.+|..|+.+|+.++.+...
T Consensus 327 ~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~-~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~---- 399 (462)
T 1ibr_B 327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP---- 399 (462)
T ss_dssp HHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--TH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCT----
T ss_pred HHHHHhcccccccccchHHHHHHHHHHHHHHhccH--HH-HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcH----
Confidence 777753 2457899999999999874331 11 234566677888899999999999999999965321
Q ss_pred HhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCC
Q 007104 412 IRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD 479 (618)
Q Consensus 412 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 479 (618)
..+.. .-..+++.++..+.++++.+|..|+++|++++...
T Consensus 400 ---~~~~~-------------------------~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 400 ---SQLKP-------------------------LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp ---TTTCT-------------------------TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred ---HHHHH-------------------------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 00110 11357888999999999999999999999998543
No 78
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.44 E-value=7.3e-12 Score=115.04 Aligned_cols=189 Identities=28% Similarity=0.309 Sum_probs=158.4
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHH
Q 007104 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (618)
Q Consensus 206 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 285 (618)
.+.++.|+..|+++++.+|..++.+|..+.. .+.++.|+.++.++++.++..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 4568999999999999999999999998763 3568999999999999999999999999842
Q ss_pred HHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC
Q 007104 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH 365 (618)
Q Consensus 286 ~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 365 (618)
.+.++.|+.++.++++.++..++.+|+++.. .+.++.|+.++.++++.+|..++.+|+++..
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence 2367889999999999999999999999842 2368899999999999999999999999853
Q ss_pred cchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHH
Q 007104 366 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 445 (618)
Q Consensus 366 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (618)
...++.|..++.++++.++..++.+|..+..
T Consensus 142 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------------------------------------ 172 (211)
T 3ltm_A 142 -------ERAVEPLIKALKDEDGWVRQSAADALGEIGG------------------------------------------ 172 (211)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------------------------------------------
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------------------------------------
Confidence 2467889999999999999999999999842
Q ss_pred hhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCc
Q 007104 446 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 480 (618)
Q Consensus 446 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 480 (618)
...++.|..++.++++.+|..|..+|.++.....
T Consensus 173 -~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 173 -ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred -hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 1256678889999999999999999999976544
No 79
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.42 E-value=1.7e-11 Score=111.55 Aligned_cols=184 Identities=28% Similarity=0.316 Sum_probs=158.0
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHH
Q 007104 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (618)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (618)
+..+.+++.|+++++.+|..++.+|..+.. .+.++.|+.++.++++.++..++++|+.+.. +
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~----- 75 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E----- 75 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G-----
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H-----
Confidence 456899999999999999999999998763 2568999999999999999999999999832 2
Q ss_pred HHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCc
Q 007104 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN 366 (618)
Q Consensus 287 ~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 366 (618)
..++.|+.++.+.++.++..++++|+++.. ...++.|+.++.++++.+|..++++|+++..
T Consensus 76 ----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 76 ----RAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 367889999999999999999999999842 2368889999999999999999999999853
Q ss_pred chhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHh
Q 007104 367 QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 446 (618)
Q Consensus 367 ~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (618)
...++.|..++.++++.++..|+.+|..+..
T Consensus 137 ------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~------------------------------------------- 167 (201)
T 3ltj_A 137 ------ERAVEPLIKALKDEDGWVRQSAADALGEIGG------------------------------------------- 167 (201)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------------------------------------------
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------------------------------------
Confidence 3467889999999999999999999999831
Q ss_pred hhhHHHHHHHHhhCCHhHHHHHHHHHHhhc
Q 007104 447 GRVLNHLLYLMRVAEKGVQRRVALALAHLC 476 (618)
Q Consensus 447 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 476 (618)
...++.|..++.++++.++..|..+|..+.
T Consensus 168 ~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 168 ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 124667888899999999999999999874
No 80
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.41 E-value=9.6e-12 Score=113.25 Aligned_cols=185 Identities=24% Similarity=0.265 Sum_probs=158.1
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHH
Q 007104 249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328 (618)
Q Consensus 249 ~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 328 (618)
+..+.++.+|+++++.++..|+++|+.+.. .+.++.|+.++.++++.++..++.+|+.+.. +
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~----- 75 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E----- 75 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G-----
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H-----
Confidence 457889999999999999999999998842 2367889999999999999999999999842 2
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcch
Q 007104 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV 408 (618)
Q Consensus 329 l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 408 (618)
..++.|+.+|.++++.+|..++++|+++.. ...++.|+.++.++++.++..|+.+|..+...
T Consensus 76 ----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---- 137 (201)
T 3ltj_A 76 ----RAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE---- 137 (201)
T ss_dssp ----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG----
T ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH----
Confidence 368899999999999999999999999853 24678899999999999999999999998521
Q ss_pred hHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecC
Q 007104 409 ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDG 488 (618)
Q Consensus 409 ~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 488 (618)
..++.|..++.++++.++..++.+|+.+. ..
T Consensus 138 ---------------------------------------~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----------~~ 168 (201)
T 3ltj_A 138 ---------------------------------------RAVEPLIKALKDEDGWVRQSAADALGEIG----------GE 168 (201)
T ss_dssp ---------------------------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------SH
T ss_pred ---------------------------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------ch
Confidence 24567888999999999999999999983 23
Q ss_pred CchHHHHHHhcCCChhhhhhHHHHHHHhhh
Q 007104 489 GGLELLLGLLGSTNPKQQLDGAVALFKLAN 518 (618)
Q Consensus 489 ~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 518 (618)
.+++.|..++.++++.+|..|..+|..+..
T Consensus 169 ~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 169 RVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 478899999999999999999999988754
No 81
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.38 E-value=1.7e-11 Score=143.06 Aligned_cols=412 Identities=15% Similarity=0.077 Sum_probs=254.2
Q ss_pred hHHHHHHHHHHHHHhccChhh-HHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChh-hHHH
Q 007104 76 DRAAAKRATHVLAELAKNEEV-VNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPE-HQQL 152 (618)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~-~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~-~~~~ 152 (618)
|..++..|...|.+....+.. ...-.....++.|++.|.+.+. ++|..|+.+|+.++ ..++ ..
T Consensus 19 d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~------------~vR~~A~~~L~~l~~~~~~~~~-- 84 (1230)
T 1u6g_C 19 DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNG------------EVQNLAVKCLGPLVSKVKEYQV-- 84 (1230)
T ss_dssp SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSH------------HHHHHHHHHHHHHHTTSCHHHH--
T ss_pred CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCH------------HHHHHHHHHHHHHHHhCCHHHH--
Confidence 677888998888877653210 0000112357888888875544 99999999999999 3222 11
Q ss_pred HHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhh-----HHHHhcCChHHHHHhhc-CCCHHHHHH
Q 007104 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK-----TRVRMEGGIPPLVELLE-FTDTKVQRA 226 (618)
Q Consensus 153 ~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~-----~~~~~~~~i~~L~~ll~-~~~~~v~~~ 226 (618)
..+++.++..+.+.+. .++..++.+|..++....... ..-.....++.|...+. ++++.++..
T Consensus 85 ---~~i~~~Ll~~l~d~~~--------~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~ 153 (1230)
T 1u6g_C 85 ---ETIVDTLCTNMLSDKE--------QLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLE 153 (1230)
T ss_dssp ---HHHHHHHHHHTTCSSS--------HHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHH
T ss_pred ---HHHHHHHHHHhcCCcH--------HHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHH
Confidence 1245667777666554 888999999999886544320 01112356789999998 588999999
Q ss_pred HHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCC-h
Q 007104 227 AAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-S 305 (618)
Q Consensus 227 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~ 305 (618)
++.+|..++...+....... ..+++.++..+.++++.+|..|+.+|+.++...+.. . -...++.++..+.+.. .
T Consensus 154 al~~l~~~~~~~~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~~~~ 228 (1230)
T 1u6g_C 154 ALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSM 228 (1230)
T ss_dssp HHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhccCCch
Confidence 99999999853222111111 235677777888889999999999999998764421 1 2345777887776543 4
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhc-
Q 007104 306 ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD- 384 (618)
Q Consensus 306 ~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~- 384 (618)
..+..++.+++.++...+..... .-..+++.++..+.+.++.+|..+..++..++........-.-...++.+++.+.
T Consensus 229 ~~r~~a~~~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~ 307 (1230)
T 1u6g_C 229 STTRTYIQCIAAISRQAGHRIGE-YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTY 307 (1230)
T ss_dssp CSCTTHHHHHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCC
T ss_pred hHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCC
Confidence 56777888888887433321100 1146789999999998999999999999998874322110011122333333221
Q ss_pred ------------------------------------CCChhHHHHHHHHHHHhhcCCcc-hhHHHhhcccccccccc-hh
Q 007104 385 ------------------------------------SKNGSLQHNAAFALYGLADNEDN-VADFIRVGGVQKLQDGE-FI 426 (618)
Q Consensus 385 ------------------------------------~~~~~v~~~a~~~L~~l~~~~~~-~~~l~~~~~~~~L~~~~-~~ 426 (618)
+..+++|..|+.+|..++..... ...++. ..++.+.... ..
T Consensus 308 d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~d~ 386 (1230)
T 1u6g_C 308 DPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK-TVSPALISRFKER 386 (1230)
T ss_dssp C------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHT-TTHHHHHSTTSCS
T ss_pred CCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHH-HHHHHHHHHcCCC
Confidence 12356899999999998853221 122221 2223332211 11
Q ss_pred hhhHHHHHHH----HHHHH----------------------HHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCc
Q 007104 427 VQATKDCVAK----TLKRL----------------------EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 480 (618)
Q Consensus 427 ~~~~~~~~~~----~~~~~----------------------~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 480 (618)
...++..+.. .+... ....-..+++.+...++++++.+|..++.+|+.++....
T Consensus 387 ~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~ 466 (1230)
T 1u6g_C 387 EENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLP 466 (1230)
T ss_dssp SSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHch
Confidence 1222222222 22111 122334566667777899999999999999998864322
Q ss_pred cccceecCCchHHHHHHhcCCCh--hhhhhHHHHHHHhhhh
Q 007104 481 QRTIFIDGGGLELLLGLLGSTNP--KQQLDGAVALFKLANK 519 (618)
Q Consensus 481 ~~~~~~~~~~l~~L~~ll~~~~~--~v~~~a~~~L~~L~~~ 519 (618)
....-.-...++.++..+.+.++ .++..++..+..+...
T Consensus 467 ~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~ 507 (1230)
T 1u6g_C 467 GALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCN 507 (1230)
T ss_dssp TTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHS
T ss_pred hhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHh
Confidence 11111124567888888887664 8899999999888753
No 82
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.37 E-value=3.3e-10 Score=122.61 Aligned_cols=197 Identities=16% Similarity=0.143 Sum_probs=147.7
Q ss_pred HHHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHH-HhhcCCCCCccccCCCcchhHHHHHHHHH
Q 007104 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALV-KHLQAPPTSEADRNLKPFEHEVEKGSAFA 139 (618)
Q Consensus 61 ~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv-~lL~~~~~~~~~~~~~~~~~~v~~~a~~~ 139 (618)
.+++.|.+. ++..|..|+.+|.+++.++..+..+...|+|+.++ .+|.+++. +||..|+++
T Consensus 38 Pll~~L~S~------~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~------------~Vr~~A~ga 99 (684)
T 4gmo_A 38 PVLKDLKSP------DAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNI------------DSRAAGWEI 99 (684)
T ss_dssp HHHHHHSSS------CCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCH------------HHHHHHHHH
T ss_pred HHHHHcCCC------CHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCH------------HHHHHHHHH
Confidence 344555544 55678899999999999999999999999998765 56777766 999999999
Q ss_pred HHHhc--CChhhHHHHHhCCcHHHHHHHHhhccCCC------C-------cccchHHHHHHHHHHHHhhhcCchhhHHHH
Q 007104 140 LGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSN------C-------SRAVNSVIRRAADAITNLAHENSSIKTRVR 204 (618)
Q Consensus 140 L~~l~--~~~~~~~~~~~~g~l~~L~~lL~~~~~~~------~-------~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 204 (618)
|.||+ ..++.+..+...|+++.|..+++...... . ....+++...++.+|++||..+......+.
T Consensus 100 LrnL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~ 179 (684)
T 4gmo_A 100 LKVLAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVA 179 (684)
T ss_dssp HHHHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999 67899999999999999999987532110 0 011235667788999999998888877888
Q ss_pred hcCChHHHHHhhcC---CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHH---HHHHhhcCCCHHHHHHHHHHHHHH
Q 007104 205 MEGGIPPLVELLEF---TDTKVQRAAAGALRTLAFKNDENKNQIVECNALP---TLILMLRSEDSAIHYEAVGVIGNL 276 (618)
Q Consensus 205 ~~~~i~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~---~L~~ll~~~~~~v~~~a~~~L~~l 276 (618)
..++++.++..|.+ ...+++..++.+|..++.+++.....+.+.+... .+..+.++. ...+..+++.|.|+
T Consensus 180 ~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~-~~~~~la~giL~Ni 256 (684)
T 4gmo_A 180 TKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGT-DPRAVMACGVLHNV 256 (684)
T ss_dssp TCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSS-CTTHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCC-cHHHHHHHHHHHhH
Confidence 88999999998854 3468999999999999998887777777765432 233332232 22345556666654
No 83
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.34 E-value=5.5e-11 Score=138.83 Aligned_cols=403 Identities=12% Similarity=0.094 Sum_probs=255.1
Q ss_pred HHHHHHhhccccchHHhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHH
Q 007104 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (618)
Q Consensus 60 ~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~ 138 (618)
+.+++.|...+.. .++..++..|+.++..++. .+...... -...++.|+..|.+++. .+|..|+.
T Consensus 132 ~~llp~L~~~l~~-~~~~~~~~~al~~l~~~~~~~~~~l~~~-~~~ll~~l~~~L~~~~~------------~vR~~a~~ 197 (1230)
T 1u6g_C 132 KKITGRLTSAIAK-QEDVSVQLEALDIMADMLSRQGGLLVNF-HPSILTCLLPQLTSPRL------------AVRKRTII 197 (1230)
T ss_dssp HHHHHHHHHHHSC-CSCHHHHHHHHHHHHHHHHHTCSSCTTT-HHHHHHHHGGGGGCSSH------------HHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHHhHhHHHHH-HHHHHHHHHHHHcCCcH------------HHHHHHHH
Confidence 3444444433321 1245688899999999875 11111000 12356778888876554 89999999
Q ss_pred HHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcC
Q 007104 139 ALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218 (618)
Q Consensus 139 ~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~ 218 (618)
+|+.++..... .+ -...++.++..|...... ..+..++.++..++...+..-. -.-...++.++..+.+
T Consensus 198 al~~l~~~~~~--~~-~~~~l~~l~~~L~~~~~~-------~~r~~a~~~l~~l~~~~~~~~~-~~l~~l~~~ll~~l~d 266 (1230)
T 1u6g_C 198 ALGHLVMSCGN--IV-FVDLIEHLLSELSKNDSM-------STTRTYIQCIAAISRQAGHRIG-EYLEKIIPLVVKFCNV 266 (1230)
T ss_dssp HHHHHTTTC-------CTTHHHHHHHHHHHTCSS-------CSCTTHHHHHHHHHHHSSGGGT-TSCTTHHHHHHHHHSS
T ss_pred HHHHHHHhcCH--HH-HHHHHHHHHHHhccCCch-------hHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHhcC
Confidence 99999932211 11 335688899888776431 4556678888888765443111 0113567888899988
Q ss_pred CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcC-------------------------------------C
Q 007104 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-------------------------------------E 261 (618)
Q Consensus 219 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-------------------------------------~ 261 (618)
.++++|..++.++..++...+....... ..+++.++..+.. .
T Consensus 267 ~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 345 (1230)
T 1u6g_C 267 DDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDM 345 (1230)
T ss_dssp CCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC------------------------------------C
T ss_pred CCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhccccccccccc
Confidence 8899999999999988864332211111 1233444433321 1
Q ss_pred CHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCCh----------------hh
Q 007104 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS----------------DC 325 (618)
Q Consensus 262 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~----------------~~ 325 (618)
...+|..|+.+|..++...+...... -..+++.++..+.+.+..++..++.++..+..... .+
T Consensus 346 ~~~vR~~A~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (1230)
T 1u6g_C 346 SWKVRRAAAKCLDAVVSTRHEMLPEF-YKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETP 424 (1230)
T ss_dssp TTHHHHHHHHHHHHHHTTCCTTHHHH-HTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCH
T ss_pred CHHHHHHHHHHHHHHHHhchhHHHHH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccch
Confidence 13568889999999876544322222 24578888888888888999999888877753100 01
Q ss_pred HH--HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCCh--hHHHHHHHHHHHh
Q 007104 326 KV--HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNG--SLQHNAAFALYGL 401 (618)
Q Consensus 326 ~~--~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~--~v~~~a~~~L~~l 401 (618)
.. ...-..+++.+...++++++.+|..++.+++.++........-.-...++.++..+.+.++ .++..++..+..+
T Consensus 425 ~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~ 504 (1230)
T 1u6g_C 425 LTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVI 504 (1230)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH
Confidence 11 1112345666777799999999999999999988643221111123456778888887654 8899999999888
Q ss_pred hcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCC--C
Q 007104 402 ADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--D 479 (618)
Q Consensus 402 ~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~ 479 (618)
...... ..+. .+-..+++.++..+.+.++.++..++.++..++.. +
T Consensus 505 ~~~~~~-~~~~-------------------------------~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~ 552 (1230)
T 1u6g_C 505 LCNHSP-QVFH-------------------------------PHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRP 552 (1230)
T ss_dssp HHSSCG-GGGH-------------------------------HHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhCCH-HHHH-------------------------------hHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcC
Confidence 643211 0000 01235778888889999999988898888887621 1
Q ss_pred -----ccccceecCCchHHHHHHh--cCCChhhhhhHHHHHHHhhhhhc
Q 007104 480 -----DQRTIFIDGGGLELLLGLL--GSTNPKQQLDGAVALFKLANKAT 521 (618)
Q Consensus 480 -----~~~~~~~~~~~l~~L~~ll--~~~~~~v~~~a~~~L~~L~~~~~ 521 (618)
......+-...++.++..+ .+.++.+|..|+.++..|+...+
T Consensus 553 ~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g 601 (1230)
T 1u6g_C 553 LDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLG 601 (1230)
T ss_dssp SSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTG
T ss_pred cccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 0111112245678888888 56788999999999999998754
No 84
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.21 E-value=1.5e-08 Score=108.05 Aligned_cols=363 Identities=12% Similarity=0.092 Sum_probs=224.9
Q ss_pred CCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHH
Q 007104 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (618)
Q Consensus 104 g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~ 182 (618)
.+.+..++++.+++. ..++.+--++..++ .+++.-.. ++..+.+=|.+.+. -++
T Consensus 74 ~~~~~vvkl~~s~~~------------~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n~--------~ir 128 (621)
T 2vgl_A 74 FGHMEAVNLLSSNRY------------TEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRNP--------TFM 128 (621)
T ss_dssp SCHHHHHHGGGCSCH------------HHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCCH--------HHH
T ss_pred hhHHHHHHHhcCCCH------------HHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCCH--------HHH
Confidence 456777788887776 88989999999988 55553211 24555555555443 788
Q ss_pred HHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhh--cCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcC
Q 007104 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELL--EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS 260 (618)
Q Consensus 183 ~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll--~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~ 260 (618)
..|+.+|+++.. ++. . ...++.+..++ .+.++.||..|+.++..+...+++... ..+.++.+..+|.+
T Consensus 129 ~lALr~L~~i~~--~e~----~-~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~d 198 (621)
T 2vgl_A 129 GLALHCIANVGS--REM----A-EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLND 198 (621)
T ss_dssp HHHHHHHHHHCC--HHH----H-HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTTC
T ss_pred HHHHHHhhccCC--HHH----H-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhCC
Confidence 899999999864 322 2 24568888999 889999999999999999875554332 24789999999999
Q ss_pred CCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHH----HhhcCC-------------ChhHHHHHHHHHHHHhcC-C
Q 007104 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI----GLLSSC-------------CSESQREAALLLGQFAAT-D 322 (618)
Q Consensus 261 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~----~ll~~~-------------~~~~~~~a~~~L~~l~~~-~ 322 (618)
.++.|+..|+.++..++..++..- ...++.++ +++... ++=.+...+..+..++.. +
T Consensus 199 ~d~~V~~~a~~~l~~i~~~~~~~~-----~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d 273 (621)
T 2vgl_A 199 QHLGVVTAATSLITTLAQKNPEEF-----KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPED 273 (621)
T ss_dssp SCHHHHHHHHHHHHHHHHHCHHHH-----TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSS
T ss_pred CCccHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCC
Confidence 999999999999999987665421 12333333 443321 234566677777777643 2
Q ss_pred hhhHHHHHhcCChHHHHHhhC---------CCC--HHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHH
Q 007104 323 SDCKVHIVQRGAVRPLIEMLQ---------SPD--VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQ 391 (618)
Q Consensus 323 ~~~~~~l~~~~~~~~L~~lL~---------~~~--~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 391 (618)
+.....+.+ ++..++..+. +.+ ..+..+++.++..+.... .+. ..++..|..++.+++++++
T Consensus 274 ~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~----~~~-~~~~~~L~~~L~~~~~nir 346 (621)
T 2vgl_A 274 PAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEP----NLL-VRACNQLGQFLQHRETNLR 346 (621)
T ss_dssp HHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCH----HHH-HHHHHHHHHHSSCSCHHHH
T ss_pred HHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcH----HHH-HHHHHHHHHHhcCCCcchH
Confidence 333333322 3444443321 112 377888888888885211 111 1346678888888999999
Q ss_pred HHHHHHHHHhhcCCcchhHHHhh--ccccccc-ccchhhhhHHHHHHHHHHHHHH-HHhhhhHHHHHHHHhhCCHhHHHH
Q 007104 392 HNAAFALYGLADNEDNVADFIRV--GGVQKLQ-DGEFIVQATKDCVAKTLKRLEE-KIHGRVLNHLLYLMRVAEKGVQRR 467 (618)
Q Consensus 392 ~~a~~~L~~l~~~~~~~~~l~~~--~~~~~L~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~L~~ll~~~~~~v~~~ 467 (618)
..++..|..++........+..+ ..+..|. +.. ..++....+.+-.+.. .--..++..|...+...+.+++..
T Consensus 347 y~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d---~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~~~~~~ 423 (621)
T 2vgl_A 347 YLALESMCTLASSEFSHEAVKTHIETVINALKTERD---VSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREE 423 (621)
T ss_dssp HHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCC---HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999998654321222111 1111111 111 1111111111111110 012456677777777778888888
Q ss_pred HHHHHHhhcCCCccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhhh
Q 007104 468 VALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (618)
Q Consensus 468 a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (618)
++.+++.++..... .....+..|++++......+..++...+..+....
T Consensus 424 ~v~~I~~la~k~~~----~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~ 472 (621)
T 2vgl_A 424 IVLKVAILAEKYAV----DYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINR 472 (621)
T ss_dssp HHHHHHHHHHHHCS----STHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhcCC----cHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCC
Confidence 88888777632110 11234777777777655567777777777776653
No 85
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.18 E-value=1.2e-08 Score=108.85 Aligned_cols=393 Identities=17% Similarity=0.189 Sum_probs=245.4
Q ss_pred hHHHHHHHHHHHHHhcc-ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHH
Q 007104 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (618)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 154 (618)
+...+..+--.+..++. +++.... ++..+.+=|++++. .++-.|+++|+++.. ++..+
T Consensus 87 ~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n~------------~ir~lALr~L~~i~~-~e~~~--- 145 (621)
T 2vgl_A 87 RYTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRNP------------TFMGLALHCIANVGS-REMAE--- 145 (621)
T ss_dssp CHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCCH------------HHHHHHHHHHHHHCC-HHHHH---
T ss_pred CHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCCH------------HHHHHHHHHhhccCC-HHHHH---
Confidence 44445555556666666 3443222 24566666776665 899999999999964 44332
Q ss_pred hCCcHHHHHHHH--hhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 007104 155 DNGALSHLVNLL--KRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR 232 (618)
Q Consensus 155 ~~g~l~~L~~lL--~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 232 (618)
..++.+.++| .+.+. .++..|+.++.++...+++... ..++++.+..+|.+.++.|+..|+.++.
T Consensus 146 --~l~~~v~~~l~~~d~~~--------~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~ 212 (621)
T 2vgl_A 146 --AFAGEIPKILVAGDTMD--------SVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLNDQHLGVVTAATSLIT 212 (621)
T ss_dssp --HHTTHHHHHHHCSSSCH--------HHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhCCCCCH--------HHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 3467888888 44443 8999999999999987765332 2478999999999999999999999999
Q ss_pred HhhcCCcccHHHHHhcCCHHHHHHhhcCC-------------CHHHHHHHHHHHHHHhcC-ChhHHHHHHhcCCHHHHHH
Q 007104 233 TLAFKNDENKNQIVECNALPTLILMLRSE-------------DSAIHYEAVGVIGNLVHS-SPNIKKEVLAAGALQPVIG 298 (618)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-------------~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~ 298 (618)
.++..++.....+. ...+..|-+++..+ ++-.+...+..|..++.. +++....+.+ .+..++.
T Consensus 213 ~i~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~ 289 (621)
T 2vgl_A 213 TLAQKNPEEFKTSV-SLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILN 289 (621)
T ss_dssp HHHHHCHHHHTTHH-HHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHH
T ss_pred HHHHhChHHHHHHH-HHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHH
Confidence 99875443211111 11233333443321 567888888888888753 3343333322 2333333
Q ss_pred hhc---------CCCh--hHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcc
Q 007104 299 LLS---------SCCS--ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ 367 (618)
Q Consensus 299 ll~---------~~~~--~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 367 (618)
.+. +.+. .+..+++.++..+. ..+.... .++..|..+|.++++.+|..++.+|..++...+..
T Consensus 290 ~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~-~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~ 363 (621)
T 2vgl_A 290 KAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD-SEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSH 363 (621)
T ss_dssp HHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC-CCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH
T ss_pred hhccCcccccccccchHHHHHHHHHHHHHhcC-CcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH
Confidence 221 1122 56777888888875 2233222 24677888898999999999999999998754322
Q ss_pred hhhHhcCCHHHHHHhhc-CCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHH-
Q 007104 368 AGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI- 445 (618)
Q Consensus 368 ~~l~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~- 445 (618)
. .+ ......++.++. +++..++..++.+|..++. +.|...++.. ....+.+. ....+.-+...+..+...+
T Consensus 364 ~-~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~-~~Nv~~Iv~e-L~~yl~~~---d~~~~~~~v~~I~~la~k~~ 436 (621)
T 2vgl_A 364 E-AV-KTHIETVINALKTERDVSVRQRAVDLLYAMCD-RSNAQQIVAE-MLSYLETA---DYSIREEIVLKVAILAEKYA 436 (621)
T ss_dssp H-HH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC-HHHHHHHHHH-HHHHHHHC---CHHHHHHHHHHHHHHHHHHC
T ss_pred H-HH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC-hhhHHHHHHH-HHHHHHhc---CHHHHHHHHHHHHHHHHhcC
Confidence 2 22 234667888888 8999999999999999984 4455554432 11111111 1111222222233333332
Q ss_pred --hhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhcCCC--hhhhhhHHHHHHHhhhhhc
Q 007104 446 --HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTN--PKQQLDGAVALFKLANKAT 521 (618)
Q Consensus 446 --~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~--~~v~~~a~~~L~~L~~~~~ 521 (618)
....+..|+.++......+...++..+..+... ... ....++..|+..+.++. ..+-..++|.+...+....
T Consensus 437 ~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~---~~~-~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~ 512 (621)
T 2vgl_A 437 VDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVIN---RDD-VQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIA 512 (621)
T ss_dssp SSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGG---GCS-CHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHH
T ss_pred CcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhC---Chh-HHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhc
Confidence 456778888888887666777777777776531 122 23446777888887643 2344566688888776654
Q ss_pred c
Q 007104 522 T 522 (618)
Q Consensus 522 ~ 522 (618)
.
T Consensus 513 ~ 513 (621)
T 2vgl_A 513 G 513 (621)
T ss_dssp S
T ss_pred c
Confidence 3
No 86
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.95 E-value=6.4e-09 Score=112.52 Aligned_cols=193 Identities=12% Similarity=0.130 Sum_probs=151.8
Q ss_pred HHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHH-HHhhccCCCCcccchHHHHH
Q 007104 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVN-LLKRHMDSNCSRAVNSVIRR 184 (618)
Q Consensus 106 v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~-lL~~~~~~~~~~~~~~~~~~ 184 (618)
+.++++.|++++. +.|..|+++|++|+.++..+..+...+++..++. +|.+.+. +++..
T Consensus 36 i~Pll~~L~S~~~------------~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~--------~Vr~~ 95 (684)
T 4gmo_A 36 ILPVLKDLKSPDA------------KSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNI--------DSRAA 95 (684)
T ss_dssp THHHHHHHSSSCC------------SHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCH--------HHHHH
T ss_pred HHHHHHHcCCCCH------------HHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCH--------HHHHH
Confidence 4446677888877 8999999999999999999999999999988765 5666555 99999
Q ss_pred HHHHHHHhhhc-CchhhHHHHhcCChHHHHHhhcCCC---------------------HHHHHHHHHHHHHhhcCCcccH
Q 007104 185 AADAITNLAHE-NSSIKTRVRMEGGIPPLVELLEFTD---------------------TKVQRAAAGALRTLAFKNDENK 242 (618)
Q Consensus 185 a~~~L~~L~~~-~~~~~~~~~~~~~i~~L~~ll~~~~---------------------~~v~~~a~~~L~~l~~~~~~~~ 242 (618)
|+++|.||+.+ .++....+...|++++|..+++... ..+...++.+|++|+..+....
T Consensus 96 A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~ 175 (684)
T 4gmo_A 96 GWEILKVLAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIH 175 (684)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999975 4567777888999999998885311 2344567889999998777778
Q ss_pred HHHHhcCCHHHHHHhhcC---CCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHH---HHHHhhcCCChhHHHHHHHHHH
Q 007104 243 NQIVECNALPTLILMLRS---EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ---PVIGLLSSCCSESQREAALLLG 316 (618)
Q Consensus 243 ~~~~~~~~~~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~---~L~~ll~~~~~~~~~~a~~~L~ 316 (618)
..+...+.++.|+..|.+ ...+++..|+.+|..++.+++...+.+...+... .+..+.. .....+..++++|.
T Consensus 176 ~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~~~~~~~la~giL~ 254 (684)
T 4gmo_A 176 EAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-GTDPRAVMACGVLH 254 (684)
T ss_dssp HHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-SSCTTHHHHHHHHH
T ss_pred HHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-CCcHHHHHHHHHHH
Confidence 888888999999988753 3468999999999999999998888888766433 3333223 33446778888999
Q ss_pred HHh
Q 007104 317 QFA 319 (618)
Q Consensus 317 ~l~ 319 (618)
|+.
T Consensus 255 Ni~ 257 (684)
T 4gmo_A 255 NVF 257 (684)
T ss_dssp HHH
T ss_pred hHh
Confidence 874
No 87
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.79 E-value=6e-06 Score=89.25 Aligned_cols=305 Identities=15% Similarity=0.108 Sum_probs=199.0
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCCh
Q 007104 130 HEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (618)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i 209 (618)
+.++..|+.+|+.+..+... .++..|...|.+.+..........++..|+..|+-...+... . .++
T Consensus 409 ~~ik~GAllaLGli~ag~~~-------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~--e-----ev~ 474 (963)
T 4ady_A 409 RFIKGGSLYGLGLIYAGFGR-------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN--I-----EVY 474 (963)
T ss_dssp HHHHHHHHHHHHHHTTTTTH-------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC--H-----HHH
T ss_pred HHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC--H-----HHH
Confidence 48899999999988833221 146778888877651000000015777788888876553321 1 135
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCChhHHHHHH
Q 007104 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (618)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (618)
..|..++.+++..++..++.+|..+-.+. .+. .++..|+..+ .+.+..+++.++.+|+.+..+.++
T Consensus 475 e~L~~~L~dd~~~~~~~AalALGli~vGT-gn~------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e------ 541 (963)
T 4ady_A 475 EALKEVLYNDSATSGEAAALGMGLCMLGT-GKP------EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE------ 541 (963)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHTTC-CCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG------
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhccc-CCH------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH------
Confidence 67788887777777777888877663321 121 1234455443 466789999999999998777665
Q ss_pred hcCCHHHHHHhhc-CCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhh-CCCCHHHHHHHHHHHHHhhcCCCc
Q 007104 289 AAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQDMHN 366 (618)
Q Consensus 289 ~~~~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~ 366 (618)
.++.++..|. +.++.+|..++.+++--..+..+.. .++.|+..+ .+.+..+|..|+.+|+.+..+.+
T Consensus 542 ---~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~-------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~- 610 (963)
T 4ady_A 542 ---LADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS-------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY- 610 (963)
T ss_dssp ---GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH-------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC-
T ss_pred ---HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH-
Confidence 3556666665 4577788888887765544433321 356555544 46788999999999999876543
Q ss_pred chhhHhcCCHHHHHH-hhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHH
Q 007104 367 QAGIAHNGGLVPLLK-LLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 445 (618)
Q Consensus 367 ~~~l~~~~~l~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (618)
..++.++. +.++.++.+|..++.+|+.++.+..+.
T Consensus 611 -------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~------------------------------------- 646 (963)
T 4ady_A 611 -------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ------------------------------------- 646 (963)
T ss_dssp -------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------------------------------------
T ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------------------------------------
Confidence 24566666 446789999999999999998654431
Q ss_pred hhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhcC--CChhhhhhHHHHHHHhhh
Q 007104 446 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS--TNPKQQLDGAVALFKLAN 518 (618)
Q Consensus 446 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~L~~ 518 (618)
.++..|..++++++..|+..|+.+|+.+.........-.-...+..|.....+ .++..+.-+.-+..-+.-
T Consensus 647 --~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~a 719 (963)
T 4ady_A 647 --SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNA 719 (963)
T ss_dssp --HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhc
Confidence 24556778889999999999999999997554433111112345556666654 456677766666555443
No 88
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.77 E-value=2.1e-08 Score=93.92 Aligned_cols=188 Identities=14% Similarity=0.067 Sum_probs=140.8
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCCcchhhHh
Q 007104 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHNQAGIAH 372 (618)
Q Consensus 294 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~l~~ 372 (618)
+.+.+.+.+.+|..|..++..|..+....+.....- -..+++.|...+. +.+..++..++.+++.|+..-...-.-..
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 457788889999999999999999975522211000 0235677888884 99999999999999999963222111223
Q ss_pred cCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHH
Q 007104 373 NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNH 452 (618)
Q Consensus 373 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 452 (618)
...++.++..+.+++..+|..+..+|..++..... ..+++.
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~---------------------------------------~~ll~~ 137 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL---------------------------------------EAQQES 137 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH---------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH---------------------------------------HHHHHH
Confidence 34688899999999999999999999999764310 135677
Q ss_pred HHHHHhhCCHhHHHHHHHHHHhhcCCC--ccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhhhc
Q 007104 453 LLYLMRVAEKGVQRRVALALAHLCSPD--DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (618)
Q Consensus 453 L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (618)
+...+.+.++.+|..++..|..+.... +......-...+|.|..++.++++++|..|..++..++...+
T Consensus 138 l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 138 IVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 888899999999999999999965432 211111123678999999999999999999999999998754
No 89
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.76 E-value=4e-06 Score=70.29 Aligned_cols=215 Identities=19% Similarity=0.183 Sum_probs=170.2
Q ss_pred CCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHH
Q 007104 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (618)
Q Consensus 103 ~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~ 181 (618)
..++..++.+|.++-- .|+..|+..+.+++ ..|+..+.+ +..|+-+++.+.. .+.
T Consensus 31 ~~~l~~lI~~LDDDlw------------tV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEa-------Ipl 86 (253)
T 2db0_A 31 ESVLKKLIELLDDDLW------------TVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEA-------IPL 86 (253)
T ss_dssp HHHHHHHHHHTTCSCH------------HHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCS-------HHH
T ss_pred HHHHHHHHHHhccHHH------------HHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhccc-------Cch
Confidence 4567888898876543 89999999999999 777765544 5677777777654 266
Q ss_pred HHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCC
Q 007104 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 261 (618)
Q Consensus 182 ~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~ 261 (618)
.......++.++...|+.-. +.+|.+..-..-+++.++.....+|..++..+|.... +++.-+..++.++
T Consensus 87 tqeIa~a~G~la~i~Pe~v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltsk 156 (253)
T 2db0_A 87 TQEIAKAFGQMAKEKPELVK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSK 156 (253)
T ss_dssp HHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCS
T ss_pred HHHHHHHHhHHHHhCHHHHH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCC
Confidence 67788999999987776433 4568888888888999999999999999986666543 3456688999999
Q ss_pred CHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHh
Q 007104 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM 341 (618)
Q Consensus 262 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~l 341 (618)
+..-+..|+.+++.+....... -...+|.|..+|.+.+.-+|..+..+|.+++..++..+.. +..-++-
T Consensus 157 d~~Dkl~aLnFi~alGen~~~y-----v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e 225 (253)
T 2db0_A 157 NREDKLTALNFIEAMGENSFKY-----VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEE 225 (253)
T ss_dssp SHHHHHHHHHHHHTCCTTTHHH-----HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHH
T ss_pred ChHHHHHHHHHHHHHhccCccc-----cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHH
Confidence 9999999999999886554432 2457899999999999999999999999999888876553 4455667
Q ss_pred hCCCCHHHHHHHHHHHHHhhc
Q 007104 342 LQSPDVQLREMSAFALGRLAQ 362 (618)
Q Consensus 342 L~~~~~~v~~~a~~~L~~l~~ 362 (618)
+.+.+..++.....+|+.++.
T Consensus 226 ~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 226 LNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp CCCSCHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHH
Confidence 888899999988888888764
No 90
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.72 E-value=8.4e-07 Score=77.84 Aligned_cols=221 Identities=14% Similarity=0.122 Sum_probs=160.0
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHH
Q 007104 249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328 (618)
Q Consensus 249 ~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 328 (618)
+.+..|..++.+.|+.++..++.+|..+...-+.......-..+++.++.++.+.+..+...|+.+|..+..+.+-....
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 46788999999999999999999999997764444444444568999999999999999999999999998665533333
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcch
Q 007104 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV 408 (618)
Q Consensus 329 l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 408 (618)
+. .+...+.+++.++++-++.+++..++.+---... ...+..+..++.+++.+++..++.+|.+++...+..
T Consensus 113 y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~ 184 (265)
T 3b2a_A 113 FL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS 184 (265)
T ss_dssp HH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred HH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence 32 2578899999999999999999999999221111 234566888889999999999999999998544321
Q ss_pred hHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecC
Q 007104 409 ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDG 488 (618)
Q Consensus 409 ~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 488 (618)
. .+ ..++..+-.++++.|+.++..|+.++-.+.+.+-....+-+-
T Consensus 185 ~------i~-----------------------------~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~ 229 (265)
T 3b2a_A 185 G------HL-----------------------------TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIEL 229 (265)
T ss_dssp C------CG-----------------------------GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHH
T ss_pred H------HH-----------------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHH
Confidence 1 11 124455778999999999999999999998765432222222
Q ss_pred CchHHHH-HHh-cCCChhhhhhHHHH
Q 007104 489 GGLELLL-GLL-GSTNPKQQLDGAVA 512 (618)
Q Consensus 489 ~~l~~L~-~ll-~~~~~~v~~~a~~~ 512 (618)
-.+-..+ .+. ..+.|.++..|-..
T Consensus 230 ~~~~~~v~~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 230 LKISRIVDGLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp HHHHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 2222222 222 24667776665443
No 91
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=98.70 E-value=2.4e-08 Score=77.49 Aligned_cols=57 Identities=19% Similarity=0.406 Sum_probs=45.7
Q ss_pred EEEEE-CCeEEehhHHHHhcCCHHHHHhhcC--CCCCCCCCceecCCCCHHHHHHHHHHHh
Q 007104 552 VTFLV-EGRRFYAHRICLLASSDAFRAMFDG--GYREKDARDIEIPNIRWEVFELMMRFDE 609 (618)
Q Consensus 552 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~--~~~e~~~~~i~~~~~~~~~~~~~l~~~Y 609 (618)
|++.. +|..|.+||.+ ++.|+||++||.+ ++.|+....|.++++++.+++.+++|+|
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~ 63 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 63 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHH
Confidence 44444 68999999999 9999999999987 6788888899999999999999999999
No 92
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.70 E-value=4.3e-06 Score=82.78 Aligned_cols=345 Identities=12% Similarity=0.129 Sum_probs=208.3
Q ss_pred CCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCc---hhhHHHHhcCCh-H-HHHHhhcCCCHHHHHHHHHH
Q 007104 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS---SIKTRVRMEGGI-P-PLVELLEFTDTKVQRAAAGA 230 (618)
Q Consensus 156 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~---~~~~~~~~~~~i-~-~L~~ll~~~~~~v~~~a~~~ 230 (618)
..+...++++|+..... ++.++.+..+..+...++ ..-..+....-. . .+...+..+++-....++.+
T Consensus 76 ~~~~~~~l~lL~~~~~~-------d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l 148 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNE-------DCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNV 148 (480)
T ss_dssp STTHHHHHHHHHSCCCH-------HHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhcChH-------HHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHH
Confidence 34678899999886653 899999999999988766 332333333222 1 22223344455566667766
Q ss_pred HHHhhcCCcccHHHHHhcCCHH--HHHHhhcC-CCHHHHHHHHHHHHHHhcCChhHHHHHHhcC--CHHHHHHhhcC---
Q 007104 231 LRTLAFKNDENKNQIVECNALP--TLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG--ALQPVIGLLSS--- 302 (618)
Q Consensus 231 L~~l~~~~~~~~~~~~~~~~~~--~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~l~~L~~ll~~--- 302 (618)
+..++.......+.+- .++. .++..|+. .+.+.+.-++.+|..|... +..|..+...+ .++.++.++..
T Consensus 149 ~~ll~~~~~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~ 225 (480)
T 1ho8_A 149 VSLLVQNGLHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATD 225 (480)
T ss_dssp HHHHTSTTTCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC
T ss_pred HHHHhccCCccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhc
Confidence 6666532222211111 1223 35555554 3455577789999988765 66666666432 35666544331
Q ss_pred ------------C--ChhHHHHHHHHHHHHhcCChhhHHHHHhcCCh--HHHHHhhCC-CCHHHHHHHHHHHHHhhcCCC
Q 007104 303 ------------C--CSESQREAALLLGQFAATDSDCKVHIVQRGAV--RPLIEMLQS-PDVQLREMSAFALGRLAQDMH 365 (618)
Q Consensus 303 ------------~--~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~--~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~ 365 (618)
+ ....+.+++.+++-++. ++.....+...++. +.|+.+++. ..+.+.+-++.++.|+.....
T Consensus 226 ~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~ 304 (480)
T 1ho8_A 226 SQLATRIVATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRV 304 (480)
T ss_dssp -------------CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSS
T ss_pred cccccccccccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccc
Confidence 1 23457889999999974 45566666655533 566666765 678999999999999987542
Q ss_pred -cch----h-hHhcCCHHHHHHhhcC---CChhHHHHHHHHHHHh-------hcCCcchhHHHhhcccccccccchhhhh
Q 007104 366 -NQA----G-IAHNGGLVPLLKLLDS---KNGSLQHNAAFALYGL-------ADNEDNVADFIRVGGVQKLQDGEFIVQA 429 (618)
Q Consensus 366 -~~~----~-l~~~~~l~~L~~ll~~---~~~~v~~~a~~~L~~l-------~~~~~~~~~l~~~~~~~~L~~~~~~~~~ 429 (618)
... . ++..++ .++++.|.. .|+++....-.....| +..+++..++.. |-+ +.... +.
T Consensus 305 ~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~s-G~L----~WSP~-H~ 377 (480)
T 1ho8_A 305 KQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDS-KLL----CWSPP-HV 377 (480)
T ss_dssp TTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH-TCC----CCCGG-GG
T ss_pred hhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhc-CCc----ccCCC-cc
Confidence 111 1 222334 455555543 3666554433333222 222333333322 221 11111 11
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhh----------CCHhHHHHHHHHHHhhcC-CCccccceecCCchHHHHHHh
Q 007104 430 TKDCVAKTLKRLEEKIHGRVLNHLLYLMRV----------AEKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLL 498 (618)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~----------~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~l~~L~~ll 498 (618)
...-..+...++.. -...+++.|+.+|.+ .++.+..-||.=|+.++. .+..+.++-+.|+-..+.+++
T Consensus 378 se~FW~ENa~kf~e-~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm 456 (480)
T 1ho8_A 378 DNGFWSDNIDEFKK-DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELL 456 (480)
T ss_dssp CHHHHHHHSGGGSS-GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHT
T ss_pred chhHHHHHHHHHHh-cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHh
Confidence 11122222222222 355788999999984 368888889999999974 556777777889999999999
Q ss_pred cCCChhhhhhHHHHHHHhhhh
Q 007104 499 GSTNPKQQLDGAVALFKLANK 519 (618)
Q Consensus 499 ~~~~~~v~~~a~~~L~~L~~~ 519 (618)
.++|++||..|..|+..+..+
T Consensus 457 ~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 457 NHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp SCSSHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999988765
No 93
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.70 E-value=1.4e-07 Score=88.25 Aligned_cols=186 Identities=12% Similarity=0.080 Sum_probs=139.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhHHHHHH
Q 007104 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (618)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (618)
+.+.+.+.+.++..|..++..|..+..+.+....... ..+++.|...+. +.+..++..|+.+++.++..-...-. -.
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~-~~ 95 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFS-NY 95 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGH-HH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHH-HH
Confidence 4577888899999999999999999875332111001 234677888884 99999999999999999854221111 11
Q ss_pred hcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC-cc
Q 007104 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH-NQ 367 (618)
Q Consensus 289 ~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~ 367 (618)
-..+++.++..+.+.+..++..+..+|.+++...+ . ..+++.+...+++.++.+|..++.+|..+..... ..
T Consensus 96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 23478999999999999999999999999975432 1 1257888999999999999999999999765432 11
Q ss_pred -hhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcC
Q 007104 368 -AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 404 (618)
Q Consensus 368 -~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 404 (618)
..-.-...++.|..++.+.++++|..|..++..++..
T Consensus 169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 1112235688899999999999999999999999744
No 94
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.69 E-value=7.3e-06 Score=68.73 Aligned_cols=213 Identities=17% Similarity=0.191 Sum_probs=161.1
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhHHH
Q 007104 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKK 285 (618)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~ 285 (618)
.++..++.+|.++-+.|+.+|+..+.+++...++..+-+ +..|+-+++ ++....-.+..++++.++.-.|+...
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~ 106 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVK 106 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHH
Confidence 467888999998889999999999999998666665443 344666655 66777778889999999887776533
Q ss_pred HHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC
Q 007104 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH 365 (618)
Q Consensus 286 ~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 365 (618)
. .+|.+..-..-+++..+.....+|..++..+|.... +++..+..++.+++..=+..++..+..+..+
T Consensus 107 ~-----vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen-- 174 (253)
T 2db0_A 107 S-----MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGEN-- 174 (253)
T ss_dssp H-----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT--
T ss_pred h-----hHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhcc--
Confidence 3 567777777778999999999999999987776543 3567889999999988788877777766543
Q ss_pred cchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHH
Q 007104 366 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 445 (618)
Q Consensus 366 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (618)
+.. .-...++.|..+|++++.-||..|..+|.+++.-.+....+
T Consensus 175 -~~~-yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki---------------------------------- 218 (253)
T 2db0_A 175 -SFK-YVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV---------------------------------- 218 (253)
T ss_dssp -THH-HHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH----------------------------------
T ss_pred -Ccc-ccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH----------------------------------
Confidence 222 22357899999999999999999999999999654433222
Q ss_pred hhhhHHHHHHHHhhCCHhHHHHHHHHHHhhc
Q 007104 446 HGRVLNHLLYLMRVAEKGVQRRVALALAHLC 476 (618)
Q Consensus 446 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 476 (618)
+..-+.-+++.+..++..+...|+.++
T Consensus 219 ----i~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 219 ----VIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp ----HHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 222344456677778887777777764
No 95
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.65 E-value=4e-06 Score=73.61 Aligned_cols=188 Identities=17% Similarity=0.110 Sum_probs=152.2
Q ss_pred CcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007104 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (618)
Q Consensus 157 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 236 (618)
+.+..+..+|.+.+. .++..++.+|..+....+.......-...++.++.++++.|..+...|+++|..+..
T Consensus 33 ~~l~~L~~LL~dkD~--------~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe 104 (265)
T 3b2a_A 33 RALFLILELAGEDDE--------TTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVK 104 (265)
T ss_dssp HHHHHHHHHTTSSCH--------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhccch--------HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc
Confidence 357888899977766 999999999999998765554545556789999999999999999999999999998
Q ss_pred CCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHH
Q 007104 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 316 (618)
Q Consensus 237 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~ 316 (618)
+.|-....+.. +...+..+++++++-.+..++..++.+--.+.. .+++..+.+++.+.+.+++..+..++.
T Consensus 105 ~vpL~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~ 175 (265)
T 3b2a_A 105 DVPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFL 175 (265)
T ss_dssp TCCBCHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 77766666654 367889999999999999999999999333222 125678889998899999999999999
Q ss_pred HHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 007104 317 QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM 364 (618)
Q Consensus 317 ~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 364 (618)
++++.+.+.. .-.+++..+-.+|++.|+.+++-|..++-.+...+
T Consensus 176 eia~~S~D~~---i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 176 NMLNSSADSG---HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp HHGGGCSSCC---CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HhhcccCCHH---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 9986543211 11346777888999999999999999999998764
No 96
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.65 E-value=3.7e-05 Score=83.19 Aligned_cols=306 Identities=16% Similarity=0.135 Sum_probs=200.8
Q ss_pred HhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHH
Q 007104 75 ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLI 153 (618)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~ 153 (618)
+++.++-.|+..|.-+..+... .++..|.+.|.+++...++ .-.+.++..|+-.|+.+. .+..
T Consensus 407 ~~~~ik~GAllaLGli~ag~~~-------~~~~lL~~~L~~~~~~~~~----~~~~~ir~gAaLGLGla~~GS~~----- 470 (963)
T 4ady_A 407 SSRFIKGGSLYGLGLIYAGFGR-------DTTDYLKNIIVENSGTSGD----EDVDVLLHGASLGIGLAAMGSAN----- 470 (963)
T ss_dssp SCHHHHHHHHHHHHHHTTTTTH-------HHHHHHHHHHHHHSSCCSC----HHHHHHHHHHHHHHHHHSTTCCC-----
T ss_pred CcHHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHcCccccccc----cccHHHHHHHHHHHHHHhcCCCC-----
Confidence 3456777788888777664221 1467788888765410000 001268889999999876 2211
Q ss_pred HhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhh-cCCCHHHHHHHHHHHH
Q 007104 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALR 232 (618)
Q Consensus 154 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~ 232 (618)
..++..|..+|.+.+. ..+..++.+|+.+..+.... . ++..|+..+ ...+..+++.++.+|.
T Consensus 471 --eev~e~L~~~L~dd~~--------~~~~~AalALGli~vGTgn~-~------ai~~LL~~~~e~~~e~vrR~aalgLG 533 (963)
T 4ady_A 471 --IEVYEALKEVLYNDSA--------TSGEAAALGMGLCMLGTGKP-E------AIHDMFTYSQETQHGNITRGLAVGLA 533 (963)
T ss_dssp --HHHHHHHHHHHHTCCH--------HHHHHHHHHHHHHHTTCCCH-H------HHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhcCCH--------HHHHHHHHHHhhhhcccCCH-H------HHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 1136677788876543 55667788888764433221 1 234444443 4567889999999999
Q ss_pred HhhcCCcccHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhh-cCCChhHHHH
Q 007104 233 TLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-SSCCSESQRE 310 (618)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~~~~~ 310 (618)
.+..++++. ++.+++.|. +.++-+|..++.+++.-..+..+.. .+..|+..+ .+.+..+|+.
T Consensus 534 ll~~g~~e~---------~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~-------aIq~LL~~~~~d~~d~VRra 597 (963)
T 4ady_A 534 LINYGRQEL---------ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS-------AVKRLLHVAVSDSNDDVRRA 597 (963)
T ss_dssp HHTTTCGGG---------GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH-------HHHHHHHHHHHCSCHHHHHH
T ss_pred hhhCCChHH---------HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHhccCCcHHHHHH
Confidence 887654433 566666665 6789999999888876554433321 344444444 4567789999
Q ss_pred HHHHHHHHhcCChhhHHHHHhcCChHHHHHhh-CCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChh
Q 007104 311 AALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGS 389 (618)
Q Consensus 311 a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~ 389 (618)
|+.+|+.+..++++ .++.++.+| ++.++.+|..++.+|+.++.+.... .++..|..+.++.+..
T Consensus 598 AViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~------~aid~L~~L~~D~d~~ 662 (963)
T 4ady_A 598 AVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ------SAIDVLDPLTKDPVDF 662 (963)
T ss_dssp HHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH------HHHHHHHHHHTCSSHH
T ss_pred HHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH------HHHHHHHHHccCCCHH
Confidence 99999998766542 466677644 5689999999999999998765442 2466788889999999
Q ss_pred HHHHHHHHHHHhhcCCcch--hHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh--CCHhHH
Q 007104 390 LQHNAAFALYGLADNEDNV--ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV--AEKGVQ 465 (618)
Q Consensus 390 v~~~a~~~L~~l~~~~~~~--~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~ 465 (618)
|+..|+.+|+.+.....+. ..+. +++..|.....+ .++..+
T Consensus 663 Vrq~Ai~ALG~Ig~gtnna~~~rva-----------------------------------~~l~~L~~~~~dk~~d~~~~ 707 (963)
T 4ady_A 663 VRQAAMIALSMILIQQTEKLNPQVA-----------------------------------DINKNFLSVITNKHQEGLAK 707 (963)
T ss_dssp HHHHHHHHHHHHSTTCCTTTCTTHH-----------------------------------HHHHHHHHHHHCSSSCHHHH
T ss_pred HHHHHHHHHHHHhcCCccccchHHH-----------------------------------HHHHHHHHHHhcccccHHHH
Confidence 9999999999997543321 1111 234456666654 467888
Q ss_pred HHHHHHHHhhcCCC
Q 007104 466 RRVALALAHLCSPD 479 (618)
Q Consensus 466 ~~a~~~L~~l~~~~ 479 (618)
..+..+.+-+..+.
T Consensus 708 fga~iAqGll~aG~ 721 (963)
T 4ady_A 708 FGACVAQGIMNAGG 721 (963)
T ss_dssp HHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHhcCC
Confidence 88888888875443
No 97
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.64 E-value=5.7e-08 Score=90.69 Aligned_cols=195 Identities=11% Similarity=0.067 Sum_probs=140.8
Q ss_pred HHHHhhcCCChhHHHHHHHHHHH-HhcCChhhHHHHHh-cCChHHHHHhh-CCCCHHHHHHHHHHHHHhhcCCC-cchh-
Q 007104 295 PVIGLLSSCCSESQREAALLLGQ-FAATDSDCKVHIVQ-RGAVRPLIEML-QSPDVQLREMSAFALGRLAQDMH-NQAG- 369 (618)
Q Consensus 295 ~L~~ll~~~~~~~~~~a~~~L~~-l~~~~~~~~~~l~~-~~~~~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~-~~~~- 369 (618)
-+...+.+.+|..|.+++..|.. +..+++.....-.+ ..++..|...+ ++.+..++..|+.+|+.|+.+-. ..-.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35667788999999999999999 87443321100000 13467788888 78999999999999999996332 2211
Q ss_pred hHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhh
Q 007104 370 IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRV 449 (618)
Q Consensus 370 l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (618)
-.....++.++..+.++...|+..+..+|..++..... ....+. -..+
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~---~~~~~~-----------------------------l~~l 147 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP---LASSGR-----------------------------NEDM 147 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT---TCTTCT-----------------------------THHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc---cccCCc-----------------------------HHHH
Confidence 22234688899999999999999999999998753211 000000 1136
Q ss_pred HHHHHHHHhhCCHhHHHHHHHHHHhhcCCCcc---ccceec-CCchHHHHHHhcCCChhhhhhHHHHHHHhhhhhc
Q 007104 450 LNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ---RTIFID-GGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (618)
Q Consensus 450 l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~---~~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (618)
++.|+..|.+.++.+|..++.+|..++..... .....- ...+|.|..++.+.++++|..|..++..+++..+
T Consensus 148 l~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 148 LKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFG 223 (249)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 77889999999999999999999999744332 111122 5789999999999999999999999999998754
No 98
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.64 E-value=1.2e-06 Score=84.93 Aligned_cols=278 Identities=13% Similarity=0.023 Sum_probs=156.7
Q ss_pred HHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 007104 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN 238 (618)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 238 (618)
...+++++.+.+. ++++..--.+.+++...++. +. ++..+..=++++++-+|..|+++|+++..
T Consensus 70 f~~v~kl~~s~d~--------~lKrLvYLyl~~~~~~~~e~---iL---v~Nsl~kDl~~~N~~iR~lALRtL~~I~~-- 133 (355)
T 3tjz_B 70 FFAMTKLFQSNDP--------TLRRMCYLTIKEMSCIAEDV---II---VTSSLTKDMTGKEDSYRGPAVRALCQITD-- 133 (355)
T ss_dssp HHHHHGGGGCCCH--------HHHHHHHHHHHHHTTTSSCG---GG---GHHHHHHHHHSSCHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHhcCCCH--------HHHHHHHHHHHHhCCCHHHH---HH---HHHHHHhhcCCCcHhHHHHHHHHHhcCCC--
Confidence 4556667776655 78887777777777753321 22 45778888889999999999999999985
Q ss_pred cccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHH
Q 007104 239 DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQF 318 (618)
Q Consensus 239 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l 318 (618)
++..+. +.+.+.+.+.+.++.|+..|+-+...+....++.. .+++..+..++.+.++.+...|..+|..+
T Consensus 134 ~~m~~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll~d~n~~V~~~Al~lL~ei 203 (355)
T 3tjz_B 134 STMLQA-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAASSDNIMVQYHALGLLYHV 203 (355)
T ss_dssp TTTHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 444332 34557788889999999999999999988777642 36899999999999999999999999999
Q ss_pred hcCChhhHHHHHhcCChHHHHHhhCC---CCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHH
Q 007104 319 AATDSDCKVHIVQRGAVRPLIEMLQS---PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAA 395 (618)
Q Consensus 319 ~~~~~~~~~~l~~~~~~~~L~~lL~~---~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 395 (618)
...+.. .+..++..+.. .++-.+......+..++..++. -.....++.+..++++.++.|...|+
T Consensus 204 ~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~---~~~~~~~~~l~~~L~~~~~aVvyEa~ 271 (355)
T 3tjz_B 204 RKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG---SRDSPLFDFIESCLRNKHEMVVYEAA 271 (355)
T ss_dssp HTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHH
T ss_pred HhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch---hhHHHHHHHHHHHHcCCChHHHHHHH
Confidence 754432 13333443333 2455555544444444443211 12234567788888999999999999
Q ss_pred HHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhh
Q 007104 396 FALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHL 475 (618)
Q Consensus 396 ~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 475 (618)
.++..+...+.. ... .++..|..++.++++++|..|+..|..+
T Consensus 272 k~I~~l~~~~~~---~~~----------------------------------~a~~~L~~fLss~d~niryvaLr~L~~l 314 (355)
T 3tjz_B 272 SAIVNLPGCSAK---ELA----------------------------------PAVSVLQLFCSSPKAALRYAAVRTLNKV 314 (355)
T ss_dssp HHHTC------------------------------------------------CCCTHHHHHHSSSSSSHHHHHHCC---
T ss_pred HHHHhccCCCHH---HHH----------------------------------HHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 999998642211 111 1123356678899999999999999998
Q ss_pred cCCCccccceecCCchHHHHHHhcCCChhhhhhHHHHHHH
Q 007104 476 CSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFK 515 (618)
Q Consensus 476 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 515 (618)
....+.... ..-.-+.+++.++|..+...|..+|..
T Consensus 315 ~~~~P~~v~----~~n~~ie~li~d~n~sI~t~Aittllk 350 (355)
T 3tjz_B 315 AMKHPSAVT----ACNLDLENLVTDANRSIATLAITTLLK 350 (355)
T ss_dssp ----------------------------------------
T ss_pred HHHCcHHHH----HHHHHHHHHccCCcHhHHHHHHHHhhh
Confidence 765442221 134567788889998888777766654
No 99
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.60 E-value=2.8e-06 Score=82.39 Aligned_cols=246 Identities=11% Similarity=0.055 Sum_probs=161.3
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHH
Q 007104 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (618)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (618)
...++.++.++|..+++.+.-.+.+++...++ .+ =++..|.+=++++++-+|-.|+++|+++... +..+.
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e---~i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~~-- 139 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED---VI---IVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQA-- 139 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC---GG---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHHH--
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH---HH---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHHH--
Confidence 46678899999999999999999888864222 22 1367788888899999999999999999543 22222
Q ss_pred hcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcch
Q 007104 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA 368 (618)
Q Consensus 289 ~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 368 (618)
+.+.+.+.+.+.++-+++.|+.+...+....++.. .+++..+-+++.+.++.++.+|..+|..+...+..
T Consensus 140 ---l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~-- 209 (355)
T 3tjz_B 140 ---IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL-- 209 (355)
T ss_dssp ---HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH--
T ss_pred ---HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH--
Confidence 46778899999999999999999999987766642 36899999999999999999999999999875311
Q ss_pred hhHhcCCHHHHHHhhcCC---ChhHHHHHHHHHHHhhcCC-cchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHH
Q 007104 369 GIAHNGGLVPLLKLLDSK---NGSLQHNAAFALYGLADNE-DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 444 (618)
Q Consensus 369 ~l~~~~~l~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~-~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 444 (618)
.+..++..+... ++-.+...+.++..+...+ +.
T Consensus 210 ------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~------------------------------------- 246 (355)
T 3tjz_B 210 ------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS------------------------------------- 246 (355)
T ss_dssp ------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------------------------------
T ss_pred ------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-------------------------------------
Confidence 233344444332 3333333344443333222 11
Q ss_pred HhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhhhc
Q 007104 445 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (618)
Q Consensus 445 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (618)
....+++.+.+.|++.++.|..+|++++..+...+.. . -..++..|..++.++++++|..|...|..+....+
T Consensus 247 ~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~--~--~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P 319 (355)
T 3tjz_B 247 RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK--E--LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP 319 (355)
T ss_dssp ----------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC--------
T ss_pred hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH--H--HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc
Confidence 0123455566777888999999999999998653221 1 12356677788889999999999999999888643
No 100
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=98.49 E-value=1.7e-07 Score=80.31 Aligned_cols=60 Identities=15% Similarity=0.322 Sum_probs=50.3
Q ss_pred EEEEE-CCeEEehhHHHHhcCCHHHHHhhcC-CCC-CCCCCceecCCCCHHHHHHHHHHHhCCc
Q 007104 552 VTFLV-EGRRFYAHRICLLASSDAFRAMFDG-GYR-EKDARDIEIPNIRWEVFELMMRFDEFCA 612 (618)
Q Consensus 552 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~-~~~-e~~~~~i~~~~~~~~~~~~~l~~~Yt~~ 612 (618)
|++.. +|..|.+|+.+ ++.|+||++||.+ ++. |+....|.+++|++.+++.+++|+|++.
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~ 65 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHK 65 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcC
Confidence 56654 78999999999 8899999999998 777 7777899999999999999999999987
No 101
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.47 E-value=2.6e-08 Score=83.09 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=93.1
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHH
Q 007104 332 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF 411 (618)
Q Consensus 332 ~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l 411 (618)
...++.+..+|+++++.+|..++++|+++.. ..++.|+.++.++++.+|..|+++|.++...
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~~------- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQDE------- 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCSH-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCH-------
Confidence 4567889999999999999998888876632 1368899999999999999999999987520
Q ss_pred HhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCch
Q 007104 412 IRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGL 491 (618)
Q Consensus 412 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l 491 (618)
..++.|+.+++++++.+|..++++|+++. ...++
T Consensus 73 ------------------------------------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~ 106 (131)
T 1te4_A 73 ------------------------------------RAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVR 106 (131)
T ss_dssp ------------------------------------HHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHH
T ss_pred ------------------------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHH
Confidence 24567888899999999999999999985 23478
Q ss_pred HHHHHHhcCCChhhhhhHHHHHHHh
Q 007104 492 ELLLGLLGSTNPKQQLDGAVALFKL 516 (618)
Q Consensus 492 ~~L~~ll~~~~~~v~~~a~~~L~~L 516 (618)
+.|+.+++++++.+|..|+++|..|
T Consensus 107 ~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 107 AAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp HHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 9999999999999999999998653
No 102
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.43 E-value=4.7e-05 Score=86.20 Aligned_cols=377 Identities=9% Similarity=0.005 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHhc--CChhhHHHHHhCCcHHHHHHHHhhccC-------CCCcccchHHHHHHHHHHHHhhhcCchhhHH
Q 007104 132 VEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMD-------SNCSRAVNSVIRRAADAITNLAHENSSIKTR 202 (618)
Q Consensus 132 v~~~a~~~L~~l~--~~~~~~~~~~~~g~l~~L~~lL~~~~~-------~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 202 (618)
+...+++++..+. ..++.-... -...++.+..++..... +......+.++..++.+|..+....+..-..
T Consensus 205 ~~~~~~k~~~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~ 283 (960)
T 1wa5_C 205 VLLVLIKLYYDFNCQDIPEFFEDN-IQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGP 283 (960)
T ss_dssp HHHHHHHHHHHHHSSCCCHHHHHT-HHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHhhccchHHHHHH-HHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445777777765 333321110 01234555666654211 0111122357778888888888655542221
Q ss_pred HHhcCChHHHHHhhc-----CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHH-----Hhhc----C-----CC-
Q 007104 203 VRMEGGIPPLVELLE-----FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-----LMLR----S-----ED- 262 (618)
Q Consensus 203 ~~~~~~i~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~-----~ll~----~-----~~- 262 (618)
.. ...++.+...+. ..+..++..++..+..++. .+..+..+...+.++.++ ..+. + .+
T Consensus 284 ~~-~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~-~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp 361 (960)
T 1wa5_C 284 MI-NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTR-IPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDP 361 (960)
T ss_dssp HH-HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHT-SHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCH
T ss_pred HH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhC-cHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCH
Confidence 11 234555555554 3457888899999988875 222222221112233333 3332 0 11
Q ss_pred -------------HHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhc------CCChhHHHHHHHHHHHHhcCCh
Q 007104 263 -------------SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS------SCCSESQREAALLLGQFAATDS 323 (618)
Q Consensus 263 -------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~------~~~~~~~~~a~~~L~~l~~~~~ 323 (618)
...|..|..+|..++...+. .+. ..+++.+...+. +.+|..++.|+.+++.++....
T Consensus 362 ~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~---~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~ 437 (960)
T 1wa5_C 362 IEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV---LVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGN 437 (960)
T ss_dssp HHHHHHHHHC----CHHHHHHHHHHHHHHHCHH---HHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSC
T ss_pred HHHHHhccCcccccCcHHHHHHHHHHHHHHcch---hHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhc
Confidence 14677788888888765432 111 113444555555 5678899999999999974321
Q ss_pred hhHHHHH----hcCCh----HHHHHhhCCC---CHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHH
Q 007104 324 DCKVHIV----QRGAV----RPLIEMLQSP---DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQH 392 (618)
Q Consensus 324 ~~~~~l~----~~~~~----~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~ 392 (618)
....... ...+. ..++..+.++ ++.+|..++|+++.++..-. .. .-...++.+++.+.+.+..|+.
T Consensus 438 ~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~-~l~~~l~~l~~~L~d~~~~V~~ 514 (960)
T 1wa5_C 438 ITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KA-QLIELMPILATFLQTDEYVVYT 514 (960)
T ss_dssp CBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HH-HHHHHHHHHHHHTTCSCHHHHH
T ss_pred cccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HH-HHHHHHHHHHHHhCCCChhHHH
Confidence 0000000 00111 2233445565 89999999999999987431 11 2234567788888888899999
Q ss_pred HHHHHHHHhhcCCc---------chhHHHhhcccccccccch----hh----------hhHHHHHHHHHHHHHHH---Hh
Q 007104 393 NAAFALYGLADNED---------NVADFIRVGGVQKLQDGEF----IV----------QATKDCVAKTLKRLEEK---IH 446 (618)
Q Consensus 393 ~a~~~L~~l~~~~~---------~~~~l~~~~~~~~L~~~~~----~~----------~~~~~~~~~~~~~~~~~---~~ 446 (618)
.|+.+|.+++.... ....+. ..++.++...+ .. .....++...+...... +-
T Consensus 515 ~A~~Al~~~~~~~~~~~~~~~~~~~~~l~--p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~ 592 (960)
T 1wa5_C 515 YAAITIEKILTIRESNTSPAFIFHKEDIS--NSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF 592 (960)
T ss_dssp HHHHHHHHHTTCBSCSSSCCBSSCGGGTT--TTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH
T ss_pred HHHHHHHHHHhcccccccccccccHHHhh--hhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH
Confidence 99999999986421 111111 11122221111 10 11223333333222221 12
Q ss_pred hhhHHHHHHHHhh-----CCHhHHHHHHHHHHhhcCC-CccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhhh
Q 007104 447 GRVLNHLLYLMRV-----AEKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (618)
Q Consensus 447 ~~~l~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (618)
..+++.|...+.. .++..+..++.+|+.++.. ......-.....+|.+...+.....+....+...+..+....
T Consensus 593 ~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 593 PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence 3455555555543 3667777788888888654 111222234567888888888777777878888888887654
No 103
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.43 E-value=1.4e-06 Score=81.23 Aligned_cols=191 Identities=7% Similarity=0.016 Sum_probs=137.1
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHH-hhcCCcccHHHHHh-cCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCh--hHH-
Q 007104 211 PLVELLEFTDTKVQRAAAGALRT-LAFKNDENKNQIVE-CNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSP--NIK- 284 (618)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~-l~~~~~~~~~~~~~-~~~~~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~--~~~- 284 (618)
-+.+.+.+.++.-|..++..|.. ++.+.+.......+ ..++..|.+.+ ++.+..++..|+.+|+.++.+-. ...
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35567789999999999999999 87543332200001 13467788888 69999999999999999975421 221
Q ss_pred HHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 007104 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM 364 (618)
Q Consensus 285 ~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 364 (618)
... ..+++.++..+.+....++..+..++..++...+.......-..+++.|+..|++.++.+|..++.+|..++...
T Consensus 100 ~y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 111 226889999999988999998888888887433111000000125778888999999999999999999998644
Q ss_pred Ccc-hhh--Hh-cCCHHHHHHhhcCCChhHHHHHHHHHHHhhc
Q 007104 365 HNQ-AGI--AH-NGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 403 (618)
Q Consensus 365 ~~~-~~l--~~-~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 403 (618)
... ..+ .- ...++.|.+++.+.+.++|..|..+|..++.
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 321 221 22 5678889999999999999999999999873
No 104
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.39 E-value=2.8e-08 Score=82.90 Aligned_cols=121 Identities=22% Similarity=0.220 Sum_probs=92.7
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHH
Q 007104 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (618)
Q Consensus 206 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 285 (618)
...++.+..+|+++++.+|..++++|..+.. ..++.|+.+|+++++.+|..|+++|+++.. +
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---- 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H----
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H----
Confidence 4567889999999999999998888876642 126889999999999999999999999842 1
Q ss_pred HHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 007104 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360 (618)
Q Consensus 286 ~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l 360 (618)
..++.|+.++.+.++.++..++++|+++. ++ ..++.|..+++++++.++..++.+|.++
T Consensus 73 -----~a~~~L~~~L~d~~~~VR~~A~~aL~~~~--~~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 -----RAVEPLIKLLEDDSGFVRSGAARSLEQIG--GE---------RVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -----HHHHHHHHHHHHCCTHHHHHHHHHHHHHC--SH---------HHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--cH---------HHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 14788999999999999999999999984 22 2478899999999999999999988653
No 105
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.29 E-value=0.00015 Score=71.86 Aligned_cols=317 Identities=16% Similarity=0.182 Sum_probs=187.0
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHhcc-Ch---hhHHHHHhCCCHHH-HHHhhcCCCCCccccCCCcchhHH
Q 007104 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NE---EVVNWIVEGGAVPA-LVKHLQAPPTSEADRNLKPFEHEV 132 (618)
Q Consensus 58 ~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~---~~~~~~~~~g~v~~-Lv~lL~~~~~~~~~~~~~~~~~~v 132 (618)
.+..++.+|.... ..++....+..+.++.. ++ .....+.+..-... +.......+ ++-.
T Consensus 78 ~~~~~l~lL~~~~-----~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~d-----------d~~~ 141 (480)
T 1ho8_A 78 TLIPLIHLLSTSD-----NEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGD-----------FQTV 141 (480)
T ss_dssp THHHHHHHHHSCC-----CHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSS-----------HHHH
T ss_pred HHHHHHHHHhhcC-----hHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhccc-----------chHH
Confidence 3455677776641 22355666778888877 44 44445555443322 222111111 2356
Q ss_pred HHHHHHHHHHhc-CChhhHHHHHhCCcHH--HHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcC--
Q 007104 133 EKGSAFALGLLA-VKPEHQQLIVDNGALS--HLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG-- 207 (618)
Q Consensus 133 ~~~a~~~L~~l~-~~~~~~~~~~~~g~l~--~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~-- 207 (618)
...+..++..++ ..+...+.. ...+. -++..|...... +.+..++.+|..|.. .+..|..+...+
T Consensus 142 ll~a~~l~~ll~~~~~~~~~~l--~~l~~~~~~~~~L~~~~~~-------~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~ 211 (480)
T 1ho8_A 142 LISGFNVVSLLVQNGLHNVKLV--EKLLKNNNLINILQNIEQM-------DTCYVCIRLLQELAV-IPEYRDVIWLHEKK 211 (480)
T ss_dssp HHHHHHHHHHHTSTTTCCHHHH--HHHHHCHHHHHHHHCTTCH-------HHHHHHHHHHHHHHT-SHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHhccCCccHhHH--HHHhhhHHHHHHhccccCC-------chHHHHHHHHHHHhc-chhHHHHHHHcccc
Confidence 667777766665 222211111 01122 344555442211 445578888888888 667777776543
Q ss_pred ChHHHHHhhcC-----------------CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCH--HHHHHhhc-CCCHHHHH
Q 007104 208 GIPPLVELLEF-----------------TDTKVQRAAAGALRTLAFKNDENKNQIVECNAL--PTLILMLR-SEDSAIHY 267 (618)
Q Consensus 208 ~i~~L~~ll~~-----------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~--~~L~~ll~-~~~~~v~~ 267 (618)
.++.++.++.. ....++..++-+++.++. +++..+.+...++. ..|+.+++ +..+.+.+
T Consensus 212 ~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvR 290 (480)
T 1ho8_A 212 FMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSR 290 (480)
T ss_dssp HHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHH
T ss_pred hhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHhcchHHHHHHHHHHHhhccchhHH
Confidence 25566543321 125678999999999998 56666777666543 55666676 56789999
Q ss_pred HHHHHHHHHhcCCh----hHHH-HHHhcCCHHHHHHhhcCC---ChhHHHHHHHHHHHH-------h-------------
Q 007104 268 EAVGVIGNLVHSSP----NIKK-EVLAAGALQPVIGLLSSC---CSESQREAALLLGQF-------A------------- 319 (618)
Q Consensus 268 ~a~~~L~~l~~~~~----~~~~-~~~~~~~l~~L~~ll~~~---~~~~~~~a~~~L~~l-------~------------- 319 (618)
-++.+|.|+....+ .... .++..++++ +++.|... ++++....-.....+ +
T Consensus 291 v~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~ 369 (480)
T 1ho8_A 291 LCISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKL 369 (480)
T ss_dssp HHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCC
Confidence 99999999987652 1112 233344444 55555432 444433222211111 1
Q ss_pred -cCChhhHH-HHHh----------cCChHHHHHhhCC----------CCHHHHHHHHHHHHHhhcCCCcc-hhhHhcCCH
Q 007104 320 -ATDSDCKV-HIVQ----------RGAVRPLIEMLQS----------PDVQLREMSAFALGRLAQDMHNQ-AGIAHNGGL 376 (618)
Q Consensus 320 -~~~~~~~~-~l~~----------~~~~~~L~~lL~~----------~~~~v~~~a~~~L~~l~~~~~~~-~~l~~~~~l 376 (618)
.-+|..+. .++. ..++..|+++|++ .++.+..-||.=++.++++.+.. ..+-+.|+=
T Consensus 370 L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K 449 (480)
T 1ho8_A 370 LCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGK 449 (480)
T ss_dssp CCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHH
T ss_pred cccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcH
Confidence 11121111 1221 2366888888873 36888888999999999865554 445555777
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHhh
Q 007104 377 VPLLKLLDSKNGSLQHNAAFALYGLA 402 (618)
Q Consensus 377 ~~L~~ll~~~~~~v~~~a~~~L~~l~ 402 (618)
..+.+++.++|++|+..|+.++..+.
T Consensus 450 ~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 450 ADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 77999999999999999999998775
No 106
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.22 E-value=0.00033 Score=79.30 Aligned_cols=382 Identities=10% Similarity=0.095 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHHHhccC--hhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCCh-------
Q 007104 77 RAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKP------- 147 (618)
Q Consensus 77 ~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~------- 147 (618)
..++...+.+++.++.. ++.- .+.++.|++.+++++. ..+..++.+|..++..-
T Consensus 99 ~~ir~~l~~~ia~ia~~d~p~~W-----p~ll~~L~~~l~s~~~------------~~~~~aL~~l~~i~~~~~~~~~~~ 161 (960)
T 1wa5_C 99 NNLQVQIGEAISSIADSDFPDRW-----PTLLSDLASRLSNDDM------------VTNKGVLTVAHSIFKRWRPLFRSD 161 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHTTCCSSCT------------THHHHHHHHHHHHHGGGTTSCCCH
T ss_pred HHHHHHHHHHHHHHHHhhCccch-----hHHHHHHHHHhCCCCH------------HHHHHHHHHHHHHHHHHHHhhcCh
Confidence 45677777778877762 2110 4568888888877655 67788999999988321
Q ss_pred hhHHHH--HhCCcHHHHHHHHhh-------ccCCC-CcccchHHHHHHHHHHHHhhhcC-chh-hHHHHhcCChHHHHHh
Q 007104 148 EHQQLI--VDNGALSHLVNLLKR-------HMDSN-CSRAVNSVIRRAADAITNLAHEN-SSI-KTRVRMEGGIPPLVEL 215 (618)
Q Consensus 148 ~~~~~~--~~~g~l~~L~~lL~~-------~~~~~-~~~~~~~~~~~a~~~L~~L~~~~-~~~-~~~~~~~~~i~~L~~l 215 (618)
+.+..+ +-....+.++.++.. ..... ..+...++...++.++.++...+ +.. ...+ ...++.+..+
T Consensus 162 ~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~--~~~~~~~~~~ 239 (960)
T 1wa5_C 162 ELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI--QVGMGIFHKY 239 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH--HHHHHHHHHH
Confidence 222211 111234444444432 11100 00001134445667776665322 211 1101 1233455555
Q ss_pred hcCC------C---------HHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhc-----CCCHHHHHHHHHHHHH
Q 007104 216 LEFT------D---------TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-----SEDSAIHYEAVGVIGN 275 (618)
Q Consensus 216 l~~~------~---------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-----~~~~~v~~~a~~~L~~ 275 (618)
+... + +.++..++.+|..+....+..-.... ..+++..+..+. ..++.++..++..+..
T Consensus 240 l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~ 318 (960)
T 1wa5_C 240 LSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMI-NEFIQITWNLLTSISNQPKYDILVSKSLSFLTA 318 (960)
T ss_dssp HSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHH
T ss_pred HcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHH
Confidence 5321 1 35777888888888753332211111 234555555554 3467889999999988
Q ss_pred HhcCChhHHHHHHhcCCHHHHH-----Hhhc-----------------------CCChhHHHHHHHHHHHHhcCChhhHH
Q 007104 276 LVHSSPNIKKEVLAAGALQPVI-----GLLS-----------------------SCCSESQREAALLLGQFAATDSDCKV 327 (618)
Q Consensus 276 l~~~~~~~~~~~~~~~~l~~L~-----~ll~-----------------------~~~~~~~~~a~~~L~~l~~~~~~~~~ 327 (618)
++.. +..+..+...+.++.++ ..+. +.....|..|..+|..++...++
T Consensus 319 ~~~~-~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~--- 394 (960)
T 1wa5_C 319 VTRI-PKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV--- 394 (960)
T ss_dssp HHTS-HHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHH---
T ss_pred HhCc-HhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcch---
Confidence 8654 22111110012222222 2221 01123566677777777744332
Q ss_pred HHHhcCChHHHHHhhC------CCCHHHHHHHHHHHHHhhcCCCcchhhHhc-----CCHH----HHHHhhcCC---Chh
Q 007104 328 HIVQRGAVRPLIEMLQ------SPDVQLREMSAFALGRLAQDMHNQAGIAHN-----GGLV----PLLKLLDSK---NGS 389 (618)
Q Consensus 328 ~l~~~~~~~~L~~lL~------~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~-----~~l~----~L~~ll~~~---~~~ 389 (618)
.+. ..+++.+...+. +.+...++.|..+++.++.+......-... ...+ .++..+.++ ++.
T Consensus 395 ~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~ 473 (960)
T 1wa5_C 395 LVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHII 473 (960)
T ss_dssp HHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHH
T ss_pred hHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCce
Confidence 111 113444444454 567889999999999998642211100000 1112 233344555 889
Q ss_pred HHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHH
Q 007104 390 LQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVA 469 (618)
Q Consensus 390 v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~ 469 (618)
+|..|+++++.++..-. .. ....+++.++..|.++++.|+..|+
T Consensus 474 vr~~a~~~lg~~~~~~~--~~----------------------------------~l~~~l~~l~~~L~d~~~~V~~~A~ 517 (960)
T 1wa5_C 474 LRVDAIKYIYTFRNQLT--KA----------------------------------QLIELMPILATFLQTDEYVVYTYAA 517 (960)
T ss_dssp HHHHHHHHHHHTGGGSC--HH----------------------------------HHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred ehHHHHHHHHHHHhhCC--HH----------------------------------HHHHHHHHHHHHhCCCChhHHHHHH
Confidence 99999999999985321 00 1234677788888888999999999
Q ss_pred HHHHhhcCCCc---------cccce--ecCCchHHHHHHhcCCC---h--hhhhhHHHHHHHhhhh
Q 007104 470 LALAHLCSPDD---------QRTIF--IDGGGLELLLGLLGSTN---P--KQQLDGAVALFKLANK 519 (618)
Q Consensus 470 ~~L~~l~~~~~---------~~~~~--~~~~~l~~L~~ll~~~~---~--~v~~~a~~~L~~L~~~ 519 (618)
++|.+++...+ .+..+ .-...++.|+.++.... + .....+..+|..++..
T Consensus 518 ~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~ 583 (960)
T 1wa5_C 518 ITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQT 583 (960)
T ss_dssp HHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHH
Confidence 99999986421 12211 11234556666666541 1 1345666777666554
No 107
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.99 E-value=0.00017 Score=67.82 Aligned_cols=143 Identities=16% Similarity=0.112 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHH-hcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCCh
Q 007104 131 EVEKGSAFALGL-LAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (618)
Q Consensus 131 ~v~~~a~~~L~~-l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i 209 (618)
+.++.++.-|.. +..+..+...++..+++..|++....... +.+.+++.++.++..........+.....|
T Consensus 133 ~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~g--------N~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI 204 (339)
T 3dad_A 133 PELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADH--------NYQSYILRALGQLMLFVDGMLGVVAHSDTI 204 (339)
T ss_dssp HHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCH--------HHHHHHHHHHHHHTTSHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcCh--------HHHHHHHHHHHHHHhccccccchhCCHHHH
Confidence 667889999998 55889999999999999999999988755 899999999999998544443434455678
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhc----------CCHHHHHHhhc---CCCHHHHHHHHHHHHHH
Q 007104 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC----------NALPTLILMLR---SEDSAIHYEAVGVIGNL 276 (618)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----------~~~~~L~~ll~---~~~~~v~~~a~~~L~~l 276 (618)
..+..++.+.+..|.+.|+..|..++..++.+...+.+. ..++.|+.+|+ +.+.+++..|...|-.+
T Consensus 205 ~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~l 284 (339)
T 3dad_A 205 QWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKT 284 (339)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 889999998889999999999999998666665554332 23678999997 67899999998887776
Q ss_pred hcCCh
Q 007104 277 VHSSP 281 (618)
Q Consensus 277 ~~~~~ 281 (618)
....+
T Consensus 285 L~~ap 289 (339)
T 3dad_A 285 LAALP 289 (339)
T ss_dssp HHHCS
T ss_pred HhcCC
Confidence 55433
No 108
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.95 E-value=0.0024 Score=70.11 Aligned_cols=263 Identities=18% Similarity=0.158 Sum_probs=175.9
Q ss_pred HHHHHhhccccchHHhHHHHHHHHHHHHHhccC---hhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHH
Q 007104 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKN---EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (618)
Q Consensus 61 ~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~---~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (618)
.++..+...+..+... ..|+..+..++.. ....+.+. .+.+|.++..+.+... .|+..|.
T Consensus 54 ~~~~~~~~~~~~k~~~----~~a~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~~~~~dk~~------------~v~~aa~ 116 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA----ANAMQAVAHIANQSNLSPSVEPYI-VQLVPAICTNAGNKDK------------EIQSVAS 116 (986)
T ss_dssp HHHHHHHHHHTSHHHH----HHHHHHHHHHTCTTTCCTTTHHHH-HTTHHHHHHHTTCSSH------------HHHHHHH
T ss_pred hHHHHHHHHHhccCCH----HHHHHHHHHHHHhcCCCCCcccch-HHHHHHHHHHhcCCch------------HHHHHHH
Confidence 3444455444333222 5778888888852 11223333 2578888888877766 8999988
Q ss_pred HHHHHhc--CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHh
Q 007104 138 FALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (618)
Q Consensus 138 ~~L~~l~--~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~l 215 (618)
.++..+. .+++... .++|.|+..|+.... |..+..|+.++..|+...+. .-...-...+|.+.+.
T Consensus 117 ~~~~~~~~~~~~~a~~-----~~~~~~~~~~~~~~k-------w~~k~~~l~~~~~~~~~~~~-~~~~~~~~~~p~~~~~ 183 (986)
T 2iw3_A 117 ETLISIVNAVNPVAIK-----ALLPHLTNAIVETNK-------WQEKIAILAAFSAMVDAAKD-QVALRMPELIPVLSET 183 (986)
T ss_dssp HHHHHHHHHSCGGGHH-----HHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHSHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHH-----HHHHHHHHHhccccc-------hHHHHHHHHHHHHHHHHhHH-HHHHhccchhcchHhh
Confidence 8888888 5555432 348999999976544 68999999999999986643 2323335688999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHH
Q 007104 216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (618)
Q Consensus 216 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 295 (618)
+.+..++|...|..++..+|. --.|.+. ...+|.|++.+.+++. ...++..|+.-+.-..-....+ +=.+|.
T Consensus 184 ~~d~k~~v~~~~~~~~~~~~~-~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l--~~~~p~ 255 (986)
T 2iw3_A 184 MWDTKKEVKAAATAAMTKATE-TVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATL--SIMVPL 255 (986)
T ss_dssp TTCSSHHHHHHHHHHHHHHGG-GCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHH--HHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHHh-cCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhH--HHHHHH
Confidence 999999999999999999986 2333222 2468999999988754 4444555544322211111111 114577
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHhcCChhh-HHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhh
Q 007104 296 VIGLLSSCCSESQREAALLLGQFAATDSDC-KVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLA 361 (618)
Q Consensus 296 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~l~~~~~~~~L~~lL~~-~~~~v~~~a~~~L~~l~ 361 (618)
|..-|......+++.++.++.|+|.--++- .....-..++|.+-..... .+|++|+.+..++..|-
T Consensus 256 l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 256 LSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLR 323 (986)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred HHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 777777778889999999999998543222 1222335677777776665 79999999998888874
No 109
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.93 E-value=0.00044 Score=65.11 Aligned_cols=184 Identities=17% Similarity=0.155 Sum_probs=129.2
Q ss_pred HHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 007104 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 239 (618)
Q Consensus 160 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 239 (618)
..++.-|.+.+. +.++.++..|..+...+...-..|+..+|+..|+..+...+...+.+++.+|.++-....
T Consensus 121 ~~iiekL~~~~~--------~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~ 192 (339)
T 3dad_A 121 NAILEKLYSSSG--------PELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVD 192 (339)
T ss_dssp HHHHHHHHHCCH--------HHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHhcCCc--------HHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccc
Confidence 445555665544 677889999998665678888889999999999999999999999999999999987433
Q ss_pred ccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhc----------CCHHHHHHhhc---CCChh
Q 007104 240 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA----------GALQPVIGLLS---SCCSE 306 (618)
Q Consensus 240 ~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----------~~l~~L~~ll~---~~~~~ 306 (618)
..-..+.....+..+..++.+.+..|.+.|+..|..++..++.....+..+ ..+..++.+|. +.+.+
T Consensus 193 Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~e 272 (339)
T 3dad_A 193 GMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPE 272 (339)
T ss_dssp HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHH
T ss_pred cccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHH
Confidence 333333356678899999998899999999999999988776543333221 13778999997 56788
Q ss_pred HHHHHHHHHHHHhcCCh--hhHHH----HHhcCChHHHHHhhCCC--CHHHHH
Q 007104 307 SQREAALLLGQFAATDS--DCKVH----IVQRGAVRPLIEMLQSP--DVQLRE 351 (618)
Q Consensus 307 ~~~~a~~~L~~l~~~~~--~~~~~----l~~~~~~~~L~~lL~~~--~~~v~~ 351 (618)
++..+...+-.+....+ +.... +...|+-..+...+... +++.++
T Consensus 273 lq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 273 LLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp HHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 88887765554443322 21222 22344444555566653 555544
No 110
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.84 E-value=0.00015 Score=79.62 Aligned_cols=295 Identities=13% Similarity=0.089 Sum_probs=183.4
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh-HHHHHHhc
Q 007104 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN-IKKEVLAA 290 (618)
Q Consensus 212 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~ 290 (618)
++.-+...+..-+..++..+..+..+.... .....+++..|.+.+.+.... +.|+.++..++..... ...+..--
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~ 94 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV 94 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH
T ss_pred HHhhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH
Confidence 333343333333455666677766432111 111235677788888766544 8889999999854321 00122223
Q ss_pred CCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCCcchh
Q 007104 291 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDMHNQAG 369 (618)
Q Consensus 291 ~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 369 (618)
+.++.++..+.+....++..|..++..+...-+.... ..++|.|+..|.+. .+..+..|+.++..|+.....+..
T Consensus 95 ~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~ 170 (986)
T 2iw3_A 95 QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVA 170 (986)
T ss_dssp TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHH
Confidence 6889999999988888988877776666533232222 22588899888754 699999999999999975544444
Q ss_pred hHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHH-----
Q 007104 370 IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK----- 444 (618)
Q Consensus 370 l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~----- 444 (618)
..-...+|.+...+.+..++|...|..++..+|.--.|...- ..++.|++..-....+.+| +..+...
T Consensus 171 ~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~---~~~~~~~~~~~~p~~~~~~----~~~l~~~tfv~~ 243 (986)
T 2iw3_A 171 LRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE---RFIPSLIQCIADPTEVPET----VHLLGATTFVAE 243 (986)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG---GGHHHHHHHHHCTTHHHHH----HHHHTTCCCCSC
T ss_pred HhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh---hhHHHHHHHhcChhhhHHH----HHHhhcCeeEee
Confidence 444567888999999999999999999999998544442111 1122222211111222222 2222111
Q ss_pred HhhhhHHHHHHHH----hhCCHhHHHHHHHHHHhhcCCCccccc--eecCCchHHHHHHhcC-CChhhhhhHHHHHHHhh
Q 007104 445 IHGRVLNHLLYLM----RVAEKGVQRRVALALAHLCSPDDQRTI--FIDGGGLELLLGLLGS-TNPKQQLDGAVALFKLA 517 (618)
Q Consensus 445 ~~~~~l~~L~~ll----~~~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~ 517 (618)
++...+..++++| +.....+++.++.++.|+|.--+.... ..-...+|.|....+. .+|++|..|.+++..|-
T Consensus 244 v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 244 VTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLR 323 (986)
T ss_dssp CCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred ecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 2344444455554 455889999999999999854442221 1134566677666654 89999999999999987
Q ss_pred hhhc
Q 007104 518 NKAT 521 (618)
Q Consensus 518 ~~~~ 521 (618)
+...
T Consensus 324 ~~~~ 327 (986)
T 2iw3_A 324 RVGN 327 (986)
T ss_dssp HHHT
T ss_pred Hhhc
Confidence 6543
No 111
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=97.82 E-value=4.9e-05 Score=58.70 Aligned_cols=58 Identities=17% Similarity=0.374 Sum_probs=50.6
Q ss_pred EEEEE-CCeEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhCC
Q 007104 552 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFDEFC 611 (618)
Q Consensus 552 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~ 611 (618)
+++.. +|..|.+++.+ +..|.+++.||.+++ |.....|.+++++..+++.+++|+|.-
T Consensus 6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~~~~~Iplp~V~~~iL~kVieyc~~h 64 (99)
T 1hv2_A 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RESKGRIELKQFDSHILEKAVEYLNYN 64 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TTCTTEEEETTSCHHHHHHHHHHHHHH
T ss_pred EEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-ccCCCceecCCcCHHHHHHHHHHHHHh
Confidence 55665 88999999997 889999999998866 666678999999999999999999863
No 112
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.72 E-value=0.00096 Score=75.71 Aligned_cols=292 Identities=9% Similarity=-0.013 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHhhhcCchh-hHHHHhcCChHHHHHh-------hcCCCH---HHHHHHHHHHHHhhcCCcccH------
Q 007104 180 SVIRRAADAITNLAHENSSI-KTRVRMEGGIPPLVEL-------LEFTDT---KVQRAAAGALRTLAFKNDENK------ 242 (618)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~-~~~~~~~~~i~~L~~l-------l~~~~~---~v~~~a~~~L~~l~~~~~~~~------ 242 (618)
+++..|+.++..+....+.. ..... ...++.++.+ +...+. +.....+..+..+........
T Consensus 259 ~~~~~a~~~l~~i~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 337 (971)
T 2x1g_F 259 ELAESCLKTMVNIIIQPDCHNYPKTA-FVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITS 337 (971)
T ss_dssp HHHHHHHHHHHHHHHCSGGGGCHHHH-HHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCccccccHHHH-HHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88899999999998743211 11111 1122333322 233342 666667777777764222111
Q ss_pred ------HHHHhcCCHHHHHHhhcC-----CCHHHHHHHHHHHHHHhcCC---------hhHHHHHH--hcCCHHHHHHhh
Q 007104 243 ------NQIVECNALPTLILMLRS-----EDSAIHYEAVGVIGNLVHSS---------PNIKKEVL--AAGALQPVIGLL 300 (618)
Q Consensus 243 ------~~~~~~~~~~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~---------~~~~~~~~--~~~~l~~L~~ll 300 (618)
..+ ...++.++.+... .++++...+++.+..++... ........ -..+++.++..+
T Consensus 338 ~~~~~~~~l--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 415 (971)
T 2x1g_F 338 ADPELSILV--HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKS 415 (971)
T ss_dssp CCHHHHHHH--HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccccHHH--HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 1345555555533 47788999999888875411 11111111 113444455444
Q ss_pred cCCCh---------------hHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-----CCHHHHHHHHHHHHHh
Q 007104 301 SSCCS---------------ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-----PDVQLREMSAFALGRL 360 (618)
Q Consensus 301 ~~~~~---------------~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~-----~~~~v~~~a~~~L~~l 360 (618)
..++. ..|..+..+|..++...+...... +++.+-..+.. .+...++.++.+++.+
T Consensus 416 ~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~----~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~i 491 (971)
T 2x1g_F 416 EQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEI----LAAMLDEAIADLQRHPTHWTKLEACIYSFQSV 491 (971)
T ss_dssp SCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHH----HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHT
T ss_pred cCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence 32211 234556666766664333111111 22333333332 5778999999999999
Q ss_pred hcCCCcchhhHhcCCHHHHHHhh---c--CCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHH
Q 007104 361 AQDMHNQAGIAHNGGLVPLLKLL---D--SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVA 435 (618)
Q Consensus 361 ~~~~~~~~~l~~~~~l~~L~~ll---~--~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~ 435 (618)
+.+..... ...++.+++++ . +.++.++..++++++.++..-.... .
T Consensus 492 ae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-----~-------------------- 542 (971)
T 2x1g_F 492 AEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-----A-------------------- 542 (971)
T ss_dssp TTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----------------------------
T ss_pred HhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-----H--------------------
Confidence 87543221 12233333332 3 3488999999999999874311100 1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhcC--CChhhhhhHHHHH
Q 007104 436 KTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS--TNPKQQLDGAVAL 513 (618)
Q Consensus 436 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~L 513 (618)
....+++.++..| + +.++..|+.++.+++..-...-.-.-...+..|..++.. -+.+.+..+..++
T Consensus 543 ---------~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai 610 (971)
T 2x1g_F 543 ---------YIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSI 610 (971)
T ss_dssp ---------CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 1123566677777 3 789999999999998432211111223455566677766 3467888888888
Q ss_pred HHhhhh
Q 007104 514 FKLANK 519 (618)
Q Consensus 514 ~~L~~~ 519 (618)
..++..
T Consensus 611 ~~i~~~ 616 (971)
T 2x1g_F 611 GKLMSL 616 (971)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 888764
No 113
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.69 E-value=0.0012 Score=74.91 Aligned_cols=331 Identities=10% Similarity=-0.001 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchh--hHHHH---h
Q 007104 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSI--KTRVR---M 205 (618)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~---~ 205 (618)
.++..+++++.....-... .......++.+++.+... +++..++.++..+....... ...+. .
T Consensus 217 ~~~~~~l~~l~~wi~~~~~--~~~~~~ll~~l~~~l~~~----------~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~ 284 (963)
T 2x19_B 217 CVRQKVLKCFSSWVQLEVP--LQDCEALIQAAFAALQDS----------ELFDSSVEAIVNAISQPDAQRYVNTLLKLIP 284 (963)
T ss_dssp HHHHHHHHHHHHHHTSSCC--GGGTHHHHHHHHHHTTST----------TTHHHHHHHHHHHHTCTTGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCC--cccchHHHHHHHHHhCCc----------hHHHHHHHHHHHHHcccccccCHHHHHHHHH
Confidence 4777888888654421000 001123355555555321 78889999999988743211 11111 0
Q ss_pred --cCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccc-------HHHHHhcCCHHHHHHhhcC-----CCHHHHHHHHH
Q 007104 206 --EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN-------KNQIVECNALPTLILMLRS-----EDSAIHYEAVG 271 (618)
Q Consensus 206 --~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~~~~~~~~~~L~~ll~~-----~~~~v~~~a~~ 271 (618)
.+..+.+...+...+.......+..+..+....... ...+ ..+++.++..... .++.+...++.
T Consensus 285 ~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~ 362 (963)
T 2x19_B 285 LVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSF--LALVNMIMFCTGIPGHYPVNETTSSLTLT 362 (963)
T ss_dssp HHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHH--HHHHHHHHHHHTCSSCTTTTCGGGGGGHH
T ss_pred HHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHH--HHHHHHHHHHHcCCCCCCchhhhhhhhHH
Confidence 111222222234455566666677777665421110 1111 1345555555553 35566777777
Q ss_pred HHHHHhcCC--------hhHHHHHH--hcCCHHHHHHhhcCCCh---------------hHHHHHHHHHHHHhcCChhhH
Q 007104 272 VIGNLVHSS--------PNIKKEVL--AAGALQPVIGLLSSCCS---------------ESQREAALLLGQFAATDSDCK 326 (618)
Q Consensus 272 ~L~~l~~~~--------~~~~~~~~--~~~~l~~L~~ll~~~~~---------------~~~~~a~~~L~~l~~~~~~~~ 326 (618)
.+..++... +.....+. -..+++.++..+..++. +.+..+..+|..++...+..
T Consensus 363 fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~- 441 (963)
T 2x19_B 363 FWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAE- 441 (963)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHH-
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHH-
Confidence 777665421 11111110 01233444444432211 11233444554444211111
Q ss_pred HHHHhcCChHHHHHhh----CCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhh---cCCChhHHHHHHHHHH
Q 007104 327 VHIVQRGAVRPLIEML----QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL---DSKNGSLQHNAAFALY 399 (618)
Q Consensus 327 ~~l~~~~~~~~L~~lL----~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll---~~~~~~v~~~a~~~L~ 399 (618)
+. .-+++.+...+ .+.+...++.++++++.++.+..... ...++.+++.+ .++++.++..++++++
T Consensus 442 --~l-~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~ 514 (963)
T 2x19_B 442 --LL-SNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY----SDVVPGLIGLIPRISISNVQLADTVMFTIG 514 (963)
T ss_dssp --HH-HHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHH
T ss_pred --HH-HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 10 11233444445 55788999999999999987543211 12233444333 3357889999999999
Q ss_pred HhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCC
Q 007104 400 GLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD 479 (618)
Q Consensus 400 ~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 479 (618)
.++..-..... +-..+++.++..|++ +.++..|+.++.+++..-
T Consensus 515 ~~~~~l~~~~~----------------------------------~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~ 558 (963)
T 2x19_B 515 ALSEWLADHPV----------------------------------MINSVLPLVLHALGN--PELSVSSVSTLKKICREC 558 (963)
T ss_dssp HTHHHHHHCHH----------------------------------HHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCHH----------------------------------HHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHH
Confidence 98742111001 122466677777754 889999999999998432
Q ss_pred ccccceecCCchHHHHHHhcC--CChhhhhhHHHHHHHhhhh
Q 007104 480 DQRTIFIDGGGLELLLGLLGS--TNPKQQLDGAVALFKLANK 519 (618)
Q Consensus 480 ~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~L~~~ 519 (618)
.....-.-...+..|..++.. -+.+.+..+..++..++..
T Consensus 559 ~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~ 600 (963)
T 2x19_B 559 KYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSA 600 (963)
T ss_dssp GGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhc
Confidence 211111122345555566664 2467788888888887754
No 114
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=97.68 E-value=6.1e-05 Score=57.82 Aligned_cols=58 Identities=19% Similarity=0.428 Sum_probs=45.4
Q ss_pred EEEEE-CCeEEehhHHHHhcCCHHHHHhhcC--CCCCCCCCceecCCCCHHHHHHHHHHHhC
Q 007104 552 VTFLV-EGRRFYAHRICLLASSDAFRAMFDG--GYREKDARDIEIPNIRWEVFELMMRFDEF 610 (618)
Q Consensus 552 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~--~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt 610 (618)
+++.. +|..|.+++.+ +..|.+++.||.+ .+.|+....|.+++++..+++.+++|+|.
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~ 63 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTY 63 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHH
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHH
Confidence 44554 78999999997 7899999999985 33566667999999999999999999986
No 115
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.66 E-value=0.003 Score=70.89 Aligned_cols=318 Identities=12% Similarity=0.089 Sum_probs=167.1
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHH
Q 007104 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (618)
Q Consensus 59 v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~ 138 (618)
++..+.+|..... ..+..+...++.++.....--. ...++..+.++.+..+|.. . +++..|+.
T Consensus 191 ~~~~~~iL~~~~~--~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l~~~L~~--~------------~~r~~A~e 253 (980)
T 3ibv_A 191 VSFVYEMMLAYSN--AKNYGTVGLCLQVYAQWVSWIN-INLIVNEPCMNLLYSFLQI--E------------ELRCAACE 253 (980)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHHHHHTTS--H------------HHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHhhcC-HHhhhcchHHHHHHHHcCC--h------------HHHHHHHH
Confidence 4445555554321 1244567788888888877211 2345566788888888864 2 89999999
Q ss_pred HHHHhc---CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhh------cCc-----hhh--HH
Q 007104 139 ALGLLA---VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH------ENS-----SIK--TR 202 (618)
Q Consensus 139 ~L~~l~---~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~------~~~-----~~~--~~ 202 (618)
+|..+. ..++.+..++.. + .+...+..-... ..+.++.+..+..+..++. ..+ +.+ ..
T Consensus 254 cL~ei~~k~~~~~~k~~li~~--l-~L~~~~~~l~~~---~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~ 327 (980)
T 3ibv_A 254 TMTEIVNKKMKPLEKLNLLNI--L-NLNLFFSKSQEQ---STDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCS 327 (980)
T ss_dssp HHHHHHHSCCCHHHHHHHHHH--H-HHHHHHCC--------CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHH
T ss_pred HHHHHHHcCCChhhHHHHHHH--H-hHHHHHHHHhcc---cccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHH
Confidence 999998 334444333322 1 122222221100 0112555444444433321 121 000 00
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCC---cc---cHHHHHh--cCCHHHHHHhhcCC-----------C-
Q 007104 203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN---DE---NKNQIVE--CNALPTLILMLRSE-----------D- 262 (618)
Q Consensus 203 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~---~~---~~~~~~~--~~~~~~L~~ll~~~-----------~- 262 (618)
-.-.+.++.++.++.+++.++...++..+..+.... +. ....... ..+++.++.-++-+ +
T Consensus 328 ~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed 407 (980)
T 3ibv_A 328 FQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEE 407 (980)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSST
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhH
Confidence 111367889999998888888877777766655310 00 1111110 12344444444311 1
Q ss_pred ----HHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhc---CCChhHHHHHHHHHHHHhcCChhhHHHH-Hhc--
Q 007104 263 ----SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS---SCCSESQREAALLLGQFAATDSDCKVHI-VQR-- 332 (618)
Q Consensus 263 ----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~~~~~a~~~L~~l~~~~~~~~~~l-~~~-- 332 (618)
.+.|......+..++.-.++..-...-.-+.+.+.+.+. +.+|...+.++.+|+.++.+........ -..
T Consensus 408 ~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~ 487 (980)
T 3ibv_A 408 EAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKS 487 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccch
Confidence 123444442222332222222111000012222333342 3468889999999999985533211110 001
Q ss_pred --CChHHHHHhhC-----CCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhh------cCCChhHHHHHHHHHH
Q 007104 333 --GAVRPLIEMLQ-----SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL------DSKNGSLQHNAAFALY 399 (618)
Q Consensus 333 --~~~~~L~~lL~-----~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll------~~~~~~v~~~a~~~L~ 399 (618)
.+++.+..++. .+++.++..++++++..+..-..+ ...++++++.+ .+++..++..|+.++.
T Consensus 488 lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~-----~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~ 562 (980)
T 3ibv_A 488 PTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE-----SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFY 562 (980)
T ss_dssp BCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC-----CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC-----chhHHHHHHHHhccccccCCChhHHHHHHHHHH
Confidence 13455555554 678999999999999998754332 24455555544 4567889999999999
Q ss_pred HhhcC
Q 007104 400 GLADN 404 (618)
Q Consensus 400 ~l~~~ 404 (618)
+++..
T Consensus 563 ~f~~~ 567 (980)
T 3ibv_A 563 RFVKS 567 (980)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99843
No 116
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.56 E-value=0.0092 Score=68.11 Aligned_cols=338 Identities=12% Similarity=0.049 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchh-----hHHHHh
Q 007104 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSI-----KTRVRM 205 (618)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~-----~~~~~~ 205 (618)
.++..++.++.....--.. ..+.....++.+.+.+.. +. +++..++.+|..+.....+. ...+..
T Consensus 210 ~~~~~aL~~l~~~l~wi~~-~~~~~~~ll~~l~~~~l~-~~--------~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~ 279 (1049)
T 3m1i_C 210 SLIVATLESLLRYLHWIPY-RYIYETNILELLSTKFMT-SP--------DTRAITLKCLTEVSNLKIPQDNDLIKRQTVL 279 (1049)
T ss_dssp HHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHHTHHHH-SH--------HHHHHHHHHHHHHHHCCCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCH-HHHhhhhHHHHHHHHhCC-CH--------hHHHHHHHHHHHHHhCCCCcchhhHHHHHHH
Confidence 7899999999887621111 224556677777733322 22 88899999999998652111 111110
Q ss_pred --cCChHHHHH-h-------------hcCCCHHHHHHHHHHHHHhhcC-------CcccHHHHHhcCCHHHHHHhhcCCC
Q 007104 206 --EGGIPPLVE-L-------------LEFTDTKVQRAAAGALRTLAFK-------NDENKNQIVECNALPTLILMLRSED 262 (618)
Q Consensus 206 --~~~i~~L~~-l-------------l~~~~~~v~~~a~~~L~~l~~~-------~~~~~~~~~~~~~~~~L~~ll~~~~ 262 (618)
.+.+..+.. + ..+.+.+.....+..+..+... .+.....+ ..+++.++.....++
T Consensus 280 l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~d 357 (1049)
T 3m1i_C 280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKIEE 357 (1049)
T ss_dssp HHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcCCc
Confidence 111222211 1 1122344444555555444321 11111111 134666677667778
Q ss_pred HHHHHHHHHHHHHHhc----CC--hhHHHHHHhcCCHHHHHHhhcCCC-------------------h---hHHHHHHHH
Q 007104 263 SAIHYEAVGVIGNLVH----SS--PNIKKEVLAAGALQPVIGLLSSCC-------------------S---ESQREAALL 314 (618)
Q Consensus 263 ~~v~~~a~~~L~~l~~----~~--~~~~~~~~~~~~l~~L~~ll~~~~-------------------~---~~~~~a~~~ 314 (618)
.++...++..+..++. .. .......+ ..+++.++..+..++ . ..+..+..+
T Consensus 358 ~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l-~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~ 436 (1049)
T 3m1i_C 358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEIC-SQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV 436 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHH-HHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH-HHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHH
Confidence 8999999988888765 11 11111111 123344444442210 0 123345556
Q ss_pred HHHHhcCChhhHHHHHhcCChHHHHHhhC--CCCHHHHHHHHHHHHHhhcCCCcc-hhhHhcCCHHHHHHhhcC-----C
Q 007104 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQDMHNQ-AGIAHNGGLVPLLKLLDS-----K 386 (618)
Q Consensus 315 L~~l~~~~~~~~~~l~~~~~~~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~-~~l~~~~~l~~L~~ll~~-----~ 386 (618)
|..++...+...... +.+.+-..+. ..++..++.++++++.++..-... ..-.-...++.|..+... +
T Consensus 437 L~~l~~~~~~~~l~~----v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~ 512 (1049)
T 3m1i_C 437 LVYLTHLNVIDTEEI----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDN 512 (1049)
T ss_dssp HHHHHHHCHHHHHHH----HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHH
T ss_pred HHHHHccCHHHHHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccc
Confidence 666653222211111 2344444554 368899999999999998542221 111111233334443321 2
Q ss_pred ChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHH
Q 007104 387 NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQR 466 (618)
Q Consensus 387 ~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~ 466 (618)
++.++..++++++.++..-..... +-..+++.++..+.++++.++.
T Consensus 513 ~~~v~~~~~~~lgry~~~~~~~~~----------------------------------~l~~vl~~ll~~l~~~~~~V~~ 558 (1049)
T 3m1i_C 513 KAVVASDIMYVVGQYPRFLKAHWN----------------------------------FLRTVILKLFEFMHETHEGVQD 558 (1049)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHCHH----------------------------------HHHHHHHHHHHHTTSSCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHH----------------------------------HHHHHHHHHHHHhcCCCHHHHH
Confidence 344554677888877632111011 1224677788888888999999
Q ss_pred HHHHHHHhhcCCCccccc--------eecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhh
Q 007104 467 RVALALAHLCSPDDQRTI--------FIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (618)
Q Consensus 467 ~a~~~L~~l~~~~~~~~~--------~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (618)
.|+.++.+++........ ..-...+..|..++..-+.+.......++..+...
T Consensus 559 ~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~ 619 (1049)
T 3m1i_C 559 MACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1049)
T ss_dssp HHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc
Confidence 999999999864221100 01122334444555554455555666677666654
No 117
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.51 E-value=0.0036 Score=70.93 Aligned_cols=394 Identities=10% Similarity=0.030 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-C-----ChhhHH
Q 007104 78 AAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-V-----KPEHQQ 151 (618)
Q Consensus 78 ~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~-----~~~~~~ 151 (618)
..+.+|-..|..+-.+|+. ...+..+|..+.. +.+|..|+.+|.+.. . .++.+.
T Consensus 22 ~~r~~A~~~L~~~~~~p~~---------w~~~~~lL~~~~~-----------~~vr~~aa~~L~~~i~~~w~~l~~~~~~ 81 (971)
T 2x1g_F 22 QNQAITHEWLTDAEASPQA---------WQFSWQLMQLGKS-----------QEVQFFGAITLHSKLMKHWHEVPPENRE 81 (971)
T ss_dssp TC----CHHHHHTTTSTHH---------HHHHHHHTCTTSC-----------HHHHHHHHHHHHHHHHHCGGGCCGGGHH
T ss_pred HHHHHHHHHHHHHHcCHHH---------HHHHHHHHhcCCc-----------HHHHHHHHHHHHHHHHccHhhCCHHHHH
Confidence 3456677777776666543 4456677755322 389999999999876 2 223333
Q ss_pred HHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCC------CHHHHH
Q 007104 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT------DTKVQR 225 (618)
Q Consensus 152 ~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~------~~~v~~ 225 (618)
.+ + ..++..+......+ ..++...+.+|..++....+ . -.+.++.++..++++ ++....
T Consensus 82 ~i-r----~~ll~~l~~~~~~~-----~~vr~kl~~~la~i~~~~~p--~---Wp~~l~~l~~~~~~~~~~~~~~~~~~~ 146 (971)
T 2x1g_F 82 EL-K----QKILESIVRFAGGP-----KIVLNRLCISLGAYIVHMLG--E---WPGAIEEVINTFQNQRMPNVSADVQLW 146 (971)
T ss_dssp HH-H----HHHHHHHHHHTTSC-----HHHHHHHHHHHHHHHHHTTC--C---------HHHHHHHHTC----CHHHHHH
T ss_pred HH-H----HHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHHHccc--c---ccHHHHHHHHHHhccccccCCCHHHHH
Confidence 32 2 23444443322110 17888899999998875543 1 245778888888765 566778
Q ss_pred HHHHHHHHhhcC----Ccc-cH----HHHHhcCCHHHHHHh----hcC-CCH-------HHHHHHHHHHHHHhc--CChh
Q 007104 226 AAAGALRTLAFK----NDE-NK----NQIVECNALPTLILM----LRS-EDS-------AIHYEAVGVIGNLVH--SSPN 282 (618)
Q Consensus 226 ~a~~~L~~l~~~----~~~-~~----~~~~~~~~~~~L~~l----l~~-~~~-------~v~~~a~~~L~~l~~--~~~~ 282 (618)
.++.+|..++.. .+. .+ +.+. ..++.++.+ +.. .++ .++..++.++..... ..+.
T Consensus 147 ~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~--~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~ 224 (971)
T 2x1g_F 147 IMLEVLTAIPEEAQVIHTSVKRVVLRAEIA--KRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTI 224 (971)
T ss_dssp HHHHHHHHHHHHHHHCCCSSCHHHHHHHHH--TTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCG
T ss_pred HHHHHHHHhHHHHhccCcHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCc
Confidence 888888887741 111 11 1122 224444443 331 121 688889999887654 2222
Q ss_pred HHHHHHhcCCHHHHHHhhc----------------CCChhHHHHHHHHHHHHhcCChh--hHHHHHhcCChHHHHH----
Q 007104 283 IKKEVLAAGALQPVIGLLS----------------SCCSESQREAALLLGQFAATDSD--CKVHIVQRGAVRPLIE---- 340 (618)
Q Consensus 283 ~~~~~~~~~~l~~L~~ll~----------------~~~~~~~~~a~~~L~~l~~~~~~--~~~~l~~~~~~~~L~~---- 340 (618)
. .....++.+.. +. ..+++.+..|+.++..+....+. ....+ ..+++.++.
T Consensus 225 ~----~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~--~~l~~~~~~~~~~ 297 (971)
T 2x1g_F 225 E----GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTA--FVLIKMFLDSLSE 297 (971)
T ss_dssp G----GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHH--HHHHHHHHHHHHH
T ss_pred c----ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHH--HHHHHHHHHhHHH
Confidence 1 22335565655 41 13467788999999998864321 11111 112233332
Q ss_pred ---hhCCCCH---HHHHHHHHHHHHhhcCCCcchhhH-------------hcCCHHHHHHhhcC-----CChhHHHHHHH
Q 007104 341 ---MLQSPDV---QLREMSAFALGRLAQDMHNQAGIA-------------HNGGLVPLLKLLDS-----KNGSLQHNAAF 396 (618)
Q Consensus 341 ---lL~~~~~---~v~~~a~~~L~~l~~~~~~~~~l~-------------~~~~l~~L~~ll~~-----~~~~v~~~a~~ 396 (618)
.+.+.+. ......+..+..++.... ..+. -...++.++.+... .+.++...++.
T Consensus 298 ~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~ 375 (971)
T 2x1g_F 298 ITKTEWKRENDNEDIIVHIYMLFVSSVERHS--TLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALA 375 (971)
T ss_dssp HHHHHSSSSCSCSHHHHHHHHHHHHHHHHTH--HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHH
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHHH--HHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHH
Confidence 2234442 666666777776664211 0111 01234445554433 47788899999
Q ss_pred HHHHhhcC---------CcchhHHHhh---cccccccc------c------ch----hhhhHHHHHHHHHHHHHHHHhhh
Q 007104 397 ALYGLADN---------EDNVADFIRV---GGVQKLQD------G------EF----IVQATKDCVAKTLKRLEEKIHGR 448 (618)
Q Consensus 397 ~L~~l~~~---------~~~~~~l~~~---~~~~~L~~------~------~~----~~~~~~~~~~~~~~~~~~~~~~~ 448 (618)
.+..++.. .......... ..++.++. . .. .....+.+..+.+..+.......
T Consensus 376 fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~ 455 (971)
T 2x1g_F 376 FWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDY 455 (971)
T ss_dssp HHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 88877641 0111111000 11111110 0 00 11122334444444443333333
Q ss_pred hHHHH----HHHHhh-----CCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHh---c--CCChhhhhhHHHHHH
Q 007104 449 VLNHL----LYLMRV-----AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLL---G--STNPKQQLDGAVALF 514 (618)
Q Consensus 449 ~l~~L----~~ll~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll---~--~~~~~v~~~a~~~L~ 514 (618)
+++.+ ...+.. .+...++.++.+++.++....... ...++.++.++ . +.++.+|..+++++.
T Consensus 456 ~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~ 531 (971)
T 2x1g_F 456 ILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMG 531 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHH
Confidence 44433 344443 567789999999999986544221 13344444433 2 358899999999999
Q ss_pred Hhhhhhc
Q 007104 515 KLANKAT 521 (618)
Q Consensus 515 ~L~~~~~ 521 (618)
.++....
T Consensus 532 ~~~~~l~ 538 (971)
T 2x1g_F 532 SYCNWLM 538 (971)
T ss_dssp HTHHHHC
T ss_pred HHHHHHh
Confidence 9987643
No 118
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.49 E-value=0.0092 Score=67.09 Aligned_cols=318 Identities=11% Similarity=0.090 Sum_probs=164.7
Q ss_pred HHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHH-HhhcCCCCCccccCCCcchhHHHH
Q 007104 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALV-KHLQAPPTSEADRNLKPFEHEVEK 134 (618)
Q Consensus 56 ~~~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv-~lL~~~~~~~~~~~~~~~~~~v~~ 134 (618)
....+.+++++...+... .+..+...++.++....+--. ...++..+.++.+. .+|.. |+++.
T Consensus 189 ~~~~~~I~~ll~~iL~~~-~~~~l~~~~L~~l~s~l~WI~-i~~i~~~~ll~~l~~~~L~~--------------~~~r~ 252 (1023)
T 4hat_C 189 SKEFEQIFKLCFQVLEQG-ASSSLIVATLESLLRYLHWIP-YRYIYETNILELLSTKFMTS--------------PDTRA 252 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTTSC-THHHHSSSHHHHHHTHHHHS--------------HHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhCC-HHHhcchhHHHHHHHHHcCC--------------HHHHH
Confidence 334555666655554322 233456677888887776211 33466788899999 88852 38899
Q ss_pred HHHHHHHHhcC-C---h--hhHHHHHhCCcHHHHHHHH---------------hhccCCCCcccchHHHHHHHHHHHHhh
Q 007104 135 GSAFALGLLAV-K---P--EHQQLIVDNGALSHLVNLL---------------KRHMDSNCSRAVNSVIRRAADAITNLA 193 (618)
Q Consensus 135 ~a~~~L~~l~~-~---~--~~~~~~~~~g~l~~L~~lL---------------~~~~~~~~~~~~~~~~~~a~~~L~~L~ 193 (618)
.|+.+|..+.. . + .....+.. .++.++..+ ...+. .+.+.....+..+..+.
T Consensus 253 ~A~ecL~eIv~~~~~~~~~~~~~~l~~--lf~~~l~~l~~~i~p~~~~l~~~~~~~~~-----~D~e~~~~l~~l~~~~~ 325 (1023)
T 4hat_C 253 ITLKCLTEVSNLKIPQDNDLIKRQTVL--FFQNTLQQIATSVMPVTADLKATYANANG-----NDQSFLQDLAMFLTTYL 325 (1023)
T ss_dssp HHHHHHHHHHTSCCCSSCHHHHHHHHH--HHHHHHHHHHHHTCCTTCCHHHHHHHTCT-----THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccCCchHHHHHHHHH--HHHHHHHHHHHHhCCCcchHHHHHhcccc-----chHHHHHHHHHHHHHHH
Confidence 99999999984 2 2 12211111 111211111 11110 01256666666665555
Q ss_pred hcCch-------hhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC--CcccHHHHHh---cCCHHHHHHhhcCC
Q 007104 194 HENSS-------IKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK--NDENKNQIVE---CNALPTLILMLRSE 261 (618)
Q Consensus 194 ~~~~~-------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~---~~~~~~L~~ll~~~ 261 (618)
..... .+. +. ..++..++.+...++.++...++..-..++.. .+..+..... ..+++.++.-+.-+
T Consensus 326 e~~~~li~~~~~~~~-~l-~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P 403 (1023)
T 4hat_C 326 ARNRALLESDESLRE-LL-LNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRP 403 (1023)
T ss_dssp HHHGGGGTSCGGGHH-HH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHhCCcchhH-HH-HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 42221 111 11 11234555555567788877777665556531 0100111111 12345555544422
Q ss_pred C--------------------HH-HHHHHH-HHHHHHhcCChhHHHHHHhcCCHHHHHHhhcC--CChhHHHHHHHHHHH
Q 007104 262 D--------------------SA-IHYEAV-GVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQREAALLLGQ 317 (618)
Q Consensus 262 ~--------------------~~-v~~~a~-~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~~~~~a~~~L~~ 317 (618)
+ .+ ...... .+|..++.-....... -.++.+.+.+.+ .+|..++.++++++.
T Consensus 404 ~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~----~~~~~l~~~l~~~~~~W~~~EA~~~a~ga 479 (1023)
T 4hat_C 404 EEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEE----IMISKLARQIDGSEWSWHNINTLSWAIGS 479 (1023)
T ss_dssp TTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHSSTTCCHHHHHHHHHHHHH
T ss_pred cccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHH----HHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 1 00 111111 2232332211111000 023334444443 579999999999999
Q ss_pred HhcCChhhHHHHHhcCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHH
Q 007104 318 FAATDSDCKVHIVQRGAVRPLIEMLQS-----PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQH 392 (618)
Q Consensus 318 l~~~~~~~~~~l~~~~~~~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~ 392 (618)
++.+.......-.-..+++.|+.++.. +...++..++|+++..+..-...... -...+..|++.+.++++.++.
T Consensus 480 Ia~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~-L~~vl~~L~~~l~~~~~~v~~ 558 (1023)
T 4hat_C 480 ISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF-LRTVILKLFEFMHETHEGVQD 558 (1023)
T ss_dssp TTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH-HHHHHHHHHHHTTCSCHHHHH
T ss_pred HHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHhhcCCHHHHH
Confidence 986543322222224467778887753 34456678889999887632222222 112344455666677889999
Q ss_pred HHHHHHHHhhc
Q 007104 393 NAAFALYGLAD 403 (618)
Q Consensus 393 ~a~~~L~~l~~ 403 (618)
.|++++.+|+.
T Consensus 559 ~A~~al~~l~~ 569 (1023)
T 4hat_C 559 MACDTFIKIVQ 569 (1023)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999995
No 119
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.48 E-value=0.00098 Score=66.47 Aligned_cols=243 Identities=14% Similarity=0.086 Sum_probs=149.4
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHh--cCCHHHHHHhh--c---C--C---CHHHHHHHHHHHHH
Q 007104 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILML--R---S--E---DSAIHYEAVGVIGN 275 (618)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~~~~L~~ll--~---~--~---~~~v~~~a~~~L~~ 275 (618)
....|+.-|-++.+++|.-|+.+|+.+............. ..+.-.|+-++ . + + -..||+.|+.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 3456666666899999999999999987643211110011 11222222222 1 1 1 24799999999999
Q ss_pred HhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHH
Q 007104 276 LVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAF 355 (618)
Q Consensus 276 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~ 355 (618)
+ ..-+.. ..++..++..+....|+++..++..|..+. +-.. . -.++++.++..|.+.+.+|+..|+.
T Consensus 255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~-~--Ld~Vv~aVL~GL~D~DDDVRAVAAe 321 (800)
T 3oc3_A 255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVE-D--KDGLCRKLVSLLSSPDEDIKLLSAE 321 (800)
T ss_dssp H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCC-C--HHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHH-H--HHHHHHHHHhhcCCcccHHHHHHHH
Confidence 8 543332 334555555567889999999999999882 1111 1 2456888888999999999999999
Q ss_pred HHHHhhcCCCcchhhHhcCCHHHHHHhhcCC-Ch-hHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHH
Q 007104 356 ALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK-NG-SLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDC 433 (618)
Q Consensus 356 ~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~-~~-~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~ 433 (618)
+|.-++. ...-. ..+..+-.+|.+. +- .-.......|..|+..+.. ..
T Consensus 322 tLiPIA~-p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~------a~------------------ 371 (800)
T 3oc3_A 322 LLCHFPI-TDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE------LS------------------ 371 (800)
T ss_dssp HHTTSCC-SSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT------CC------------------
T ss_pred Hhhhhcc-hhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc------cc------------------
Confidence 9999881 11100 1122222333221 11 1123344455555544421 00
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCchHHHH-HHhcCCChhhhhhHHHH
Q 007104 434 VAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLL-GLLGSTNPKQQLDGAVA 512 (618)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~-~ll~~~~~~v~~~a~~~ 512 (618)
..+..+|+|.++++++-+.||..++.+|..+. ....+..+. +++-..+++++..+..+
T Consensus 372 -----------~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL----------~~~~LRLIFQNILLE~neeIl~lS~~V 430 (800)
T 3oc3_A 372 -----------IPPERLKDIFPCFTSPVPEVRTSILNMVKNLS----------EESIDFLVAEVVLIEEKDEIREMAIKL 430 (800)
T ss_dssp -----------CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC----------CHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred -----------cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 01246788999999999999999999998887 223444444 45567889998877766
Q ss_pred HH
Q 007104 513 LF 514 (618)
Q Consensus 513 L~ 514 (618)
..
T Consensus 431 Wk 432 (800)
T 3oc3_A 431 LK 432 (800)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 120
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.47 E-value=0.041 Score=62.23 Aligned_cols=335 Identities=12% Similarity=0.078 Sum_probs=180.4
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCCh
Q 007104 130 HEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (618)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i 209 (618)
+..++.++.+++.++..... -....++.++..+..-..+ .+.++..++++++.++..-..... . -...+
T Consensus 463 w~~~eaal~al~~i~~~~~~----~~~~~l~~l~~~l~~l~~~-----~~~vr~~~~~~l~~~~~~l~~~~~-~-l~~vl 531 (963)
T 2x19_B 463 WQHTEALLYGFQSIAETIDV----NYSDVVPGLIGLIPRISIS-----NVQLADTVMFTIGALSEWLADHPV-M-INSVL 531 (963)
T ss_dssp HHHHHHHHHHHHHHTTSCCS----SCCSHHHHHHHHGGGSCCC-----SHHHHHHHHHHHHHTHHHHHHCHH-H-HTTTH
T ss_pred hHHHHHHHHHHHHHHhhcCc----hhhHHHHHHHHHHHhCCCC-----cHHHHHHHHHHHHHHHHHHHhCHH-H-HHHHH
Confidence 58899999999999933211 0123455666655433221 127899999999998863222211 2 24678
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHh--cCCHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCh-hHH
Q 007104 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSP-NIK 284 (618)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~~~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~-~~~ 284 (618)
+.++..+.+ +.++..|+.++.+++... ...+.. ..++..+..++.. .+...+..+..+++.++...+ +..
T Consensus 532 ~~l~~~l~~--~~V~~~A~~al~~l~~~~---~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~ 606 (963)
T 2x19_B 532 PLVLHALGN--PELSVSSVSTLKKICREC---KYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEI 606 (963)
T ss_dssp HHHHHHTTC--GGGHHHHHHHHHHHHHHT---GGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHhCC--chHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHH
Confidence 888888854 789999999999999632 222221 1233444455554 356888889999999876543 322
Q ss_pred HHHHhcCCHHHHHHhhc----CC-ChhHHHH---HHHHHHHHhcC----Ch-h----------------hHHHHHhcCCh
Q 007104 285 KEVLAAGALQPVIGLLS----SC-CSESQRE---AALLLGQFAAT----DS-D----------------CKVHIVQRGAV 335 (618)
Q Consensus 285 ~~~~~~~~l~~L~~ll~----~~-~~~~~~~---a~~~L~~l~~~----~~-~----------------~~~~l~~~~~~ 335 (618)
...+ ..+++++...+. .. +++.+.. ...+|+.+... .+ . .........++
T Consensus 607 ~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (963)
T 2x19_B 607 LKNL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVF 685 (963)
T ss_dssp HHHH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHH
Confidence 2222 224444444432 22 3444432 33334333311 00 0 00111223355
Q ss_pred HHHHHhhCC--CCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhh----cC-CChhHHHHHHHHHHHhhc----C
Q 007104 336 RPLIEMLQS--PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL----DS-KNGSLQHNAAFALYGLAD----N 404 (618)
Q Consensus 336 ~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll----~~-~~~~v~~~a~~~L~~l~~----~ 404 (618)
+.+..++.. .+..+.+.++.++..++..-.... ...+++++..+ .. ..+. .+.++..+.. +
T Consensus 686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~----~~~l~~~~~~l~~~~~~~~~~~----~l~l~~~li~~f~~~ 757 (963)
T 2x19_B 686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF----APMVPQLCEMLGRMYSTIPQAS----ALDLTRQLVHIFAHE 757 (963)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT----GGGHHHHHHHHHHHHHHSCCHH----HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccc----cccHHHHHHHHHHHHHcCCccH----HHHHHHHHHHHhCCC
Confidence 666665542 577899999999998864211110 12244444332 21 2222 2333333322 1
Q ss_pred CcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh---CCHhHHHHHHHHHHhhcCCCcc
Q 007104 405 EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV---AEKGVQRRVALALAHLCSPDDQ 481 (618)
Q Consensus 405 ~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~ 481 (618)
+.....+.. +-..++..++.++.. ..|+++......+..+......
T Consensus 758 ~~~~~~~~~-------------------------------~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~ 806 (963)
T 2x19_B 758 PAHFPPIEA-------------------------------LFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPD 806 (963)
T ss_dssp TTTCHHHHH-------------------------------HHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGG
T ss_pred cchHHHHHH-------------------------------HHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcH
Confidence 100000000 011223344444442 3689999988888887643221
Q ss_pred ccc---eecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhhh
Q 007104 482 RTI---FIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (618)
Q Consensus 482 ~~~---~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (618)
... ..-...++.++..++..++.+...++..+..+....
T Consensus 807 ~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~ 848 (963)
T 2x19_B 807 LFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRC 848 (963)
T ss_dssp GGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGT
T ss_pred HHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC
Confidence 111 001123455666777889999999999999998763
No 121
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.45 E-value=0.072 Score=59.76 Aligned_cols=258 Identities=14% Similarity=0.055 Sum_probs=140.9
Q ss_pred hHHHHHHHHHHHHHhcc--Chh----hHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc--CCh
Q 007104 76 DRAAAKRATHVLAELAK--NEE----VVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKP 147 (618)
Q Consensus 76 ~~~~~~~a~~~L~~l~~--~~~----~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~ 147 (618)
+..++.-|+.+|.+... +++ .+ ..++...+..+...-....+ +-++...+.++..++ .-|
T Consensus 56 ~~~vr~fa~~~L~~~I~~l~~e~~~~~~-~~lr~~ll~~l~~~~~~~~~-----------~~IrnKL~~~la~l~~~~~p 123 (980)
T 3ibv_A 56 KPSTRLICLQTLSEKVREWNNESNLLEL-QMIRDSVWSYIKELSFLDEP-----------AYISNAVQHLLTLLFLQLYP 123 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHCCTTTSHHHH-HHHHHHHHHHHHHCCSTTSC-----------THHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhCChhhhHHHH-HHHHHHHHHHHHHhcCCCCc-----------HHHHHHHHHHHHHHHHHhCc
Confidence 56789999999888765 333 33 33333344444431000111 278999999998888 222
Q ss_pred hhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCch----------h-----hHHHHhc------
Q 007104 148 EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS----------I-----KTRVRME------ 206 (618)
Q Consensus 148 ~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~----------~-----~~~~~~~------ 206 (618)
+ .-.+.++.++.++...+.. ......+.+|..++.+-.. . +..+...
T Consensus 124 ~-----~Wp~~i~~l~~~~~~~~~~-------~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~ 191 (980)
T 3ibv_A 124 S-----NWNDFFASLQGVIAASSQS-------EFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIV 191 (980)
T ss_dssp T-----TCTTHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred c-----cCchHHHHHHHHhcCCChh-------HHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHH
Confidence 2 1234577777777654320 2333445555544432100 0 1222211
Q ss_pred -CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh--hH
Q 007104 207 -GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP--NI 283 (618)
Q Consensus 207 -~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~ 283 (618)
.++..+.....+.++.++..++.++..... --....+.+.+.++.+..++.+ ++++..|+.||..+..... +.
T Consensus 192 ~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~--wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~ 267 (980)
T 3ibv_A 192 SFVYEMMLAYSNAKNYGTVGLCLQVYAQWVS--WININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLE 267 (980)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHh--hcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhh
Confidence 122223333334678899999999998875 2334556667788888888875 7899999999999976532 33
Q ss_pred HHHHHhcCCHHHHHHhhc--CCChhHHHHHHHHHHHHh------cCCh-----hhHHH--HHhcCChHHHHHhhCCCCHH
Q 007104 284 KKEVLAAGALQPVIGLLS--SCCSESQREAALLLGQFA------ATDS-----DCKVH--IVQRGAVRPLIEMLQSPDVQ 348 (618)
Q Consensus 284 ~~~~~~~~~l~~L~~ll~--~~~~~~~~~a~~~L~~l~------~~~~-----~~~~~--l~~~~~~~~L~~lL~~~~~~ 348 (618)
+..++..=.+...+..+. ..+.+..+..+..+..++ ...+ +.... -.-.++++.++.++.+++.+
T Consensus 268 k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~de 347 (980)
T 3ibv_A 268 KLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDE 347 (980)
T ss_dssp HHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHH
T ss_pred HHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchh
Confidence 333332201111222222 345555544444333221 1111 11111 11136889999999998888
Q ss_pred HHHHHHHHHHHhh
Q 007104 349 LREMSAFALGRLA 361 (618)
Q Consensus 349 v~~~a~~~L~~l~ 361 (618)
+...++..+..+.
T Consensus 348 Vs~~t~~Fw~~~l 360 (980)
T 3ibv_A 348 TSTAVFPFLSDLL 360 (980)
T ss_dssp HHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8887777766654
No 122
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.44 E-value=6.1e-05 Score=69.10 Aligned_cols=165 Identities=20% Similarity=0.178 Sum_probs=114.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHh
Q 007104 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (618)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 289 (618)
..+..+++++++.||..++..| . .+.|..++++++..||..++..+ .
T Consensus 77 ~~l~~L~~D~~~~VR~~aA~~L---~---------------~~~L~~ll~D~d~~VR~~aA~~l------~--------- 123 (244)
T 1lrv_A 77 EALTPLIRDSDEVVRRAVAYRL---P---------------REQLSALMFDEDREVRITVADRL------P--------- 123 (244)
T ss_dssp GGGGGGTTCSSHHHHHHHHTTS---C---------------SGGGGGTTTCSCHHHHHHHHHHS------C---------
T ss_pred HHHHHHccCcCHHHHHHHHHHC---C---------------HHHHHHHHcCCCHHHHHHHHHhC------C---------
Confidence 3467778888999998887542 1 13466778889999998887742 1
Q ss_pred cCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchh
Q 007104 290 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG 369 (618)
Q Consensus 290 ~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 369 (618)
.+.+..++.++++.++..++.. +. .+.+..+++++++.||..++.. +.
T Consensus 124 ---~~~L~~L~~D~d~~VR~~aA~~---l~---------------~~~l~~l~~D~d~~VR~~aa~~---l~-------- 171 (244)
T 1lrv_A 124 ---LEQLEQMAADRDYLVRAYVVQR---IP---------------PGRLFRFMRDEDRQVRKLVAKR---LP-------- 171 (244)
T ss_dssp ---TGGGGGGTTCSSHHHHHHHHHH---SC---------------GGGGGGTTTCSCHHHHHHHHHH---SC--------
T ss_pred ---HHHHHHHHcCCCHHHHHHHHHh---cC---------------HHHHHHHHcCCCHHHHHHHHHc---CC--------
Confidence 1235566788888888887762 21 1234567788999999987774 11
Q ss_pred hHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhh
Q 007104 370 IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRV 449 (618)
Q Consensus 370 l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (618)
-+.+..+++++++.||..++..+ . .
T Consensus 172 ------~~ll~~ll~D~d~~VR~aaa~~l---~--~-------------------------------------------- 196 (244)
T 1lrv_A 172 ------EESLGLMTQDPEPEVRRIVASRL---R--G-------------------------------------------- 196 (244)
T ss_dssp ------GGGGGGSTTCSSHHHHHHHHHHC---C--G--------------------------------------------
T ss_pred ------HHHHHHHHcCCCHHHHHHHHHhC---C--H--------------------------------------------
Confidence 13355677889999999888753 1 1
Q ss_pred HHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhcCCChhhhhhHHHHH
Q 007104 450 LNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVAL 513 (618)
Q Consensus 450 l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L 513 (618)
+.|..++.++++.||..++..+. .+.|..+ .++++.||..+...|
T Consensus 197 -~~L~~Ll~D~d~~VR~~aa~~l~-----------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 197 -DDLLELLHDPDWTVRLAAVEHAS-----------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp -GGGGGGGGCSSHHHHHHHHHHSC-----------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred -HHHHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 11455678899999999998853 3566666 889999998887544
No 123
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=97.43 E-value=0.00012 Score=60.98 Aligned_cols=56 Identities=11% Similarity=0.214 Sum_probs=48.4
Q ss_pred EEEEE-CCeEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhCCc
Q 007104 552 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFDEFCA 612 (618)
Q Consensus 552 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~ 612 (618)
|++.. +|..|.+|+.+ +..|.+|+.||.+.- ...|.+++++..+++.+++|+|+..
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~----~~~Ipl~~V~~~iL~kVieyc~~h~ 60 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG----MDPVPLPNVNAAILKKVIQWCTHHK 60 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC----CSSEECTTCCHHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC----CCceecCCcCHHHHHHHHHHHHHhc
Confidence 56665 78999999998 889999999997631 4589999999999999999999865
No 124
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.26 E-value=0.031 Score=63.79 Aligned_cols=316 Identities=9% Similarity=0.075 Sum_probs=163.1
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHH-hhcCCCCCccccCCCcchhHHHHHHH
Q 007104 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVK-HLQAPPTSEADRNLKPFEHEVEKGSA 137 (618)
Q Consensus 59 v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~-lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (618)
.+.++..+...+... .+..++..++.++......-. ...+.....++.+.+ ++. + ++++..|+
T Consensus 192 ~~~i~~~~~~~l~~~-~~~~~~~~aL~~l~~~l~wi~-~~~~~~~~ll~~l~~~~l~--~------------~~~~~~a~ 255 (1049)
T 3m1i_C 192 FEQIFKLCFQVLEQG-SSSSLIVATLESLLRYLHWIP-YRYIYETNILELLSTKFMT--S------------PDTRAITL 255 (1049)
T ss_dssp HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTTSC-THHHHSSSHHHHHHTHHHH--S------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhhCC-HHHHhhhhHHHHHHHHhCC--C------------HhHHHHHH
Confidence 344444444333211 234567777887777665211 122445666777663 332 2 38999999
Q ss_pred HHHHHhc-C--Chh---hHHHHHhCCcHHHHHHHHhh---------------ccCCCCcccchHHHHHHHHHHHHhhhc-
Q 007104 138 FALGLLA-V--KPE---HQQLIVDNGALSHLVNLLKR---------------HMDSNCSRAVNSVIRRAADAITNLAHE- 195 (618)
Q Consensus 138 ~~L~~l~-~--~~~---~~~~~~~~g~l~~L~~lL~~---------------~~~~~~~~~~~~~~~~a~~~L~~L~~~- 195 (618)
.+|..+. . .+. ....+.. .++.++..+.. ..+ .+.+.....+..+..+...
T Consensus 256 ~~L~~i~~~~~~~~~~~~~~~~~~--l~~~~l~~l~~si~p~~~~l~~~~~~~~~-----~d~~~~~~l~~~~~~~~~~~ 328 (1049)
T 3m1i_C 256 KCLTEVSNLKIPQDNDLIKRQTVL--FFQNTLQQIATSVMPVTADLKATYANANG-----NDQSFLQDLAMFLTTYLARN 328 (1049)
T ss_dssp HHHHHHHHCCCCTTCHHHHHHHHH--HHHHHHHHHHHHTCCTTSCHHHHHHHTCT-----THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcchhhHHHHHHH--HHHHHHHHHHHhhCCCcccHHHHhccCCc-----chHHHHHHHHHHHHHHHHHH
Confidence 9999998 3 122 1111111 11223332221 110 0114444444444433321
Q ss_pred ------CchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC---CcccHHHHHh--cCCHHHHHHhhcCC---
Q 007104 196 ------NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK---NDENKNQIVE--CNALPTLILMLRSE--- 261 (618)
Q Consensus 196 ------~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~--~~~~~~L~~ll~~~--- 261 (618)
.+.....+ ..+++.++.....++.++...++..+..++.. .+.....+.. ..+++.++..+..+
T Consensus 329 ~~~~~~~~~~~~~l--~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~ 406 (1049)
T 3m1i_C 329 RALLESDESLRELL--LNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEV 406 (1049)
T ss_dssp HHHHHSCGGGHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTC
T ss_pred HHHHcCChhhHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcce
Confidence 11111111 23566677766777888888888888777651 0111111111 12344555544311
Q ss_pred ----------------CH---HHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhc--CCChhHHHHHHHHHHHHhc
Q 007104 262 ----------------DS---AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS--SCCSESQREAALLLGQFAA 320 (618)
Q Consensus 262 ----------------~~---~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~~~~~~a~~~L~~l~~ 320 (618)
+. ..+..+..+|..++...+...-. -+.+.+...+. ..+|..++.++++++.++.
T Consensus 407 ~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~----~v~~~l~~~l~~~~~~W~~~eaal~algsia~ 482 (1049)
T 3m1i_C 407 LVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEE----IMISKLARQIDGSEWSWHNINTLSWAIGSISG 482 (1049)
T ss_dssp CEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTT
T ss_pred eeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhc
Confidence 11 22445556666665433321111 12344445554 3578899999999999975
Q ss_pred CChhhHHHHHhcCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHH
Q 007104 321 TDSDCKVHIVQRGAVRPLIEMLQS-----PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAA 395 (618)
Q Consensus 321 ~~~~~~~~l~~~~~~~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 395 (618)
........-.-..+++.+..+... +.+.++..++++++.++..-....... ...++.++..++++++.|+..|+
T Consensus 483 ~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l-~~vl~~ll~~l~~~~~~V~~~A~ 561 (1049)
T 3m1i_C 483 TMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVILKLFEFMHETHEGVQDMAC 561 (1049)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH-HHHHHHHHHHTTSSCHHHHHHHH
T ss_pred ccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhcCCCHHHHHHHH
Confidence 432221111112345555554332 345566578899998875322222221 23466677788888999999999
Q ss_pred HHHHHhhcC
Q 007104 396 FALYGLADN 404 (618)
Q Consensus 396 ~~L~~l~~~ 404 (618)
.++.+++..
T Consensus 562 ~al~~l~~~ 570 (1049)
T 3m1i_C 562 DTFIKIVQK 570 (1049)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999963
No 125
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.26 E-value=0.065 Score=60.26 Aligned_cols=336 Identities=13% Similarity=0.064 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHH-HHHhhccCCCCcccchHHHHHHHHHHHHhhhcC---c--hhhHHHH
Q 007104 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLV-NLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN---S--SIKTRVR 204 (618)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~-~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~---~--~~~~~~~ 204 (618)
++...+++++.....--. -..+...+.++.+. .+|... +++..|+.+|..+.... + .....+.
T Consensus 210 ~l~~~~L~~l~s~l~WI~-i~~i~~~~ll~~l~~~~L~~~----------~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~ 278 (1023)
T 4hat_C 210 SLIVATLESLLRYLHWIP-YRYIYETNILELLSTKFMTSP----------DTRAITLKCLTEVSNLKIPQDNDLIKRQTV 278 (1023)
T ss_dssp HHHHHHHHHHHHHTTTSC-THHHHSSSHHHHHHTHHHHSH----------HHHHHHHHHHHHHHTSCCCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-HHHhcchhHHHHHHHHHcCCH----------HHHHHHHHHHHHHHccccCCchHHHHHHHH
Confidence 788889999988773211 24566778899999 888644 88999999999998632 2 1111111
Q ss_pred h--cCChHHH--------------HHhhcCCCHHHHHHHHHHHHHhhcCCc-------ccHHHHHhcCCHHHHHHhhcCC
Q 007104 205 M--EGGIPPL--------------VELLEFTDTKVQRAAAGALRTLAFKND-------ENKNQIVECNALPTLILMLRSE 261 (618)
Q Consensus 205 ~--~~~i~~L--------------~~ll~~~~~~v~~~a~~~L~~l~~~~~-------~~~~~~~~~~~~~~L~~ll~~~ 261 (618)
. .+.+..+ .......+.+.....+..+..+..... ..+..+. .++..|+..-..+
T Consensus 279 ~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~~~~ 356 (1023)
T 4hat_C 279 LFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLSKIE 356 (1023)
T ss_dssp HHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhhCCC
Confidence 0 0111111 111122345555566666655543111 1111110 1233444444566
Q ss_pred CHHHHHHHHHHHHHHhcC---ChhHH---HHHHhcCCHHHHHHhhcCCC-----------h--------h--HHH-HHHH
Q 007104 262 DSAIHYEAVGVIGNLVHS---SPNIK---KEVLAAGALQPVIGLLSSCC-----------S--------E--SQR-EAAL 313 (618)
Q Consensus 262 ~~~v~~~a~~~L~~l~~~---~~~~~---~~~~~~~~l~~L~~ll~~~~-----------~--------~--~~~-~a~~ 313 (618)
+.++-..++..-..++.. .+..+ ..+. ..+++.++.-+..+. + + ..- ..-.
T Consensus 357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~-~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd 435 (1023)
T 4hat_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEIC-SQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSERE 435 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHH-HHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH-HHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHH
Confidence 788877777776666531 00000 0000 113333443333322 0 0 000 0112
Q ss_pred HHHHHhcCChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCCcc-hhhHhcCCHHHHHHhhcC-----
Q 007104 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQDMHNQ-AGIAHNGGLVPLLKLLDS----- 385 (618)
Q Consensus 314 ~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~-~~l~~~~~l~~L~~ll~~----- 385 (618)
+|..++.-....... -+++.+.+.+.. .+...+++++++++.++.+.... ..-.-...++.|+++..+
T Consensus 436 ~L~~l~~l~~~~~~~----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d 511 (1023)
T 4hat_C 436 VLVYLTHLNVIDTEE----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD 511 (1023)
T ss_dssp HHHHHHHHCHHHHHH----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHhccCHHHHHH----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc
Confidence 333332111111100 123444444443 68999999999999999754332 222223456677777753
Q ss_pred CChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHH
Q 007104 386 KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQ 465 (618)
Q Consensus 386 ~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~ 465 (618)
....++..++++++..+.--.....+ -..++..|+..+.++++.++
T Consensus 512 ~k~~v~~t~~~~lGry~~wl~~~~~~----------------------------------L~~vl~~L~~~l~~~~~~v~ 557 (1023)
T 4hat_C 512 NKAVVASDIMYVVGQYPRFLKAHWNF----------------------------------LRTVILKLFEFMHETHEGVQ 557 (1023)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHCHHH----------------------------------HHHHHHHHHHHTTCSCHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHH----------------------------------HHHHHHHHHHHhhcCCHHHH
Confidence 23446667788888776422111111 12356667777777889999
Q ss_pred HHHHHHHHhhcCCCccccceec------CCchH----HHHHHhcCCChhhhhhHHHHHHHhhhhh
Q 007104 466 RRVALALAHLCSPDDQRTIFID------GGGLE----LLLGLLGSTNPKQQLDGAVALFKLANKA 520 (618)
Q Consensus 466 ~~a~~~L~~l~~~~~~~~~~~~------~~~l~----~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (618)
..|++++.++|..-. ..+.. ...++ .+......-++..+..+..++..+....
T Consensus 558 ~~A~~al~~l~~~c~--~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~ 620 (1023)
T 4hat_C 558 DMACDTFIKIVQKCK--YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1023)
T ss_dssp HHHHHHHHHHHHHHT--HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHH--HHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 999999999985322 11110 11233 3334444455666677778888777764
No 126
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.0076 Score=56.98 Aligned_cols=189 Identities=12% Similarity=0.088 Sum_probs=124.9
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccH--HHHH--hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh---
Q 007104 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK--NQIV--ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP--- 281 (618)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~--~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--- 281 (618)
+| +-+-|.+.++..|..++..|..+....+... +... -....+.+-..+.+.+..++..++.++..++....
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 44 6678899999999999999988875332211 1111 12345667788889999999999999998865321
Q ss_pred --hHHHHHHhcCCHHHHHH-hhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHH
Q 007104 282 --NIKKEVLAAGALQPVIG-LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG 358 (618)
Q Consensus 282 --~~~~~~~~~~~l~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~ 358 (618)
..........+++.|+. .+.+....++..+..++..++....... .+++.++..+.+.++.++..++..|.
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~------~~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT------QSVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH------HHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 11111222345666665 4677778888888887777653322111 13466777888999999999999999
Q ss_pred HhhcCC--Ccc-hhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcC
Q 007104 359 RLAQDM--HNQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 404 (618)
Q Consensus 359 ~l~~~~--~~~-~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 404 (618)
++.... ... ....-..+++.+..++.+.++.||..|..++..+-..
T Consensus 165 ~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 886531 111 1111122344577788999999999999999888643
No 127
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.20 E-value=0.00025 Score=65.04 Aligned_cols=116 Identities=21% Similarity=0.163 Sum_probs=75.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhc
Q 007104 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (618)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 290 (618)
.+..+++++++.||..++.. +. .+.+..+++++++.||..++.. +
T Consensus 126 ~L~~L~~D~d~~VR~~aA~~---l~---------------~~~l~~l~~D~d~~VR~~aa~~---l-------------- 170 (244)
T 1lrv_A 126 QLEQMAADRDYLVRAYVVQR---IP---------------PGRLFRFMRDEDRQVRKLVAKR---L-------------- 170 (244)
T ss_dssp GGGGGTTCSSHHHHHHHHHH---SC---------------GGGGGGTTTCSCHHHHHHHHHH---S--------------
T ss_pred HHHHHHcCCCHHHHHHHHHh---cC---------------HHHHHHHHcCCCHHHHHHHHHc---C--------------
Confidence 34556677778888776652 11 1234456667788888777664 1
Q ss_pred CCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhh
Q 007104 291 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI 370 (618)
Q Consensus 291 ~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l 370 (618)
..+.+..++.+.++.++..++..+ ..+.|..++.++++.||..++..+.
T Consensus 171 -~~~ll~~ll~D~d~~VR~aaa~~l------------------~~~~L~~Ll~D~d~~VR~~aa~~l~------------ 219 (244)
T 1lrv_A 171 -PEESLGLMTQDPEPEVRRIVASRL------------------RGDDLLELLHDPDWTVRLAAVEHAS------------ 219 (244)
T ss_dssp -CGGGGGGSTTCSSHHHHHHHHHHC------------------CGGGGGGGGGCSSHHHHHHHHHHSC------------
T ss_pred -CHHHHHHHHcCCCHHHHHHHHHhC------------------CHHHHHHHHcCCCHHHHHHHHHcCC------------
Confidence 113455677788888887777542 1345777788888888888777642
Q ss_pred HhcCCHHHHHHhhcCCChhHHHHHHHHH
Q 007104 371 AHNGGLVPLLKLLDSKNGSLQHNAAFAL 398 (618)
Q Consensus 371 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L 398 (618)
.+.|..+ .++++.|+..+...|
T Consensus 220 -----~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 220 -----LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp -----HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred -----HHHHHHc-cCCCHHHHHHHHHHh
Confidence 2445555 888888888876654
No 128
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.19 E-value=0.031 Score=52.62 Aligned_cols=206 Identities=15% Similarity=0.167 Sum_probs=154.7
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccc----HHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHh
Q 007104 203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN----KNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLV 277 (618)
Q Consensus 203 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~----~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~ 277 (618)
+...+.+..|+..+..=+.+.|..+..++.++....... .+.+.. -.+.+..++. .+++++...+-..|+.+.
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLReci 151 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRECI 151 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHHH
Confidence 445678889999998889999999999999998754332 223332 2333444444 235667777777788876
Q ss_pred cCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhc---CChHHHHHhhCCCCHHHHHHHH
Q 007104 278 HSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR---GAVRPLIEMLQSPDVQLREMSA 354 (618)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~---~~~~~L~~lL~~~~~~v~~~a~ 354 (618)
.. +...+.++..+.+-.+...+..++-++...|..++..+-.........++.. .++..+-.+|.+++.-++..++
T Consensus 152 r~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 152 RH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp TS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred Hh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 65 6666777777788889999999999999999999888876555554455443 3567777899999999999999
Q ss_pred HHHHHhhcCCCcchh----hHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHH
Q 007104 355 FALGRLAQDMHNQAG----IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF 411 (618)
Q Consensus 355 ~~L~~l~~~~~~~~~----l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l 411 (618)
..|+.+..+..+... +.+...+..+..+|.+++..++..|..+..-+..++..-..+
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I 291 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPI 291 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHH
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHH
Confidence 999999988777544 333455788999999999999999999999888777654444
No 129
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.0037 Score=59.15 Aligned_cols=188 Identities=11% Similarity=0.026 Sum_probs=124.6
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHhcCChhhH--HHHH--hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCc----c
Q 007104 296 VIGLLSSCCSESQREAALLLGQFAATDSDCK--VHIV--QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN----Q 367 (618)
Q Consensus 296 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~l~--~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~----~ 367 (618)
|-.-|.+.+|..|.+|+..|..+....+... .... -....+.+...+.+.+..++..++.++..++..... .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5677889999999999998888764432211 1111 123566777889999999999999999998763221 1
Q ss_pred h--hhHhcCCHHHHHH-hhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHH
Q 007104 368 A--GIAHNGGLVPLLK-LLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 444 (618)
Q Consensus 368 ~--~l~~~~~l~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 444 (618)
. ...-...++.|+. .+.+....++..+..++..++.......
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~----------------------------------- 138 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT----------------------------------- 138 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-----------------------------------
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-----------------------------------
Confidence 1 1122334666664 4777888899999888887764332211
Q ss_pred HhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccc---eecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhhhc
Q 007104 445 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTI---FIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (618)
Q Consensus 445 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~---~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (618)
.++..++..+.+.+|.++..++..|..+......... ..-..+++.+..++.+.++.||..|..++..+.+..+
T Consensus 139 ---~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 139 ---QSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp ---HHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred ---HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 1334466667888999999999988887532211110 0011245567788999999999999999999987643
No 130
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.06 E-value=0.0077 Score=55.49 Aligned_cols=178 Identities=11% Similarity=0.055 Sum_probs=120.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhh----cCCCHHHHHHHHHHHHHHhcCChhH--
Q 007104 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML----RSEDSAIHYEAVGVIGNLVHSSPNI-- 283 (618)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll----~~~~~~v~~~a~~~L~~l~~~~~~~-- 283 (618)
+.+...+-+.|..-+..++..|......+ .+.+.. .++.+++.+ .+.+..+...++.+|..+...-.+.
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~---~~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTS---PRSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHC---HHHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhC---hHHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 45555666677787888888777766432 223332 244455543 3788999988888888874311000
Q ss_pred -HHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 007104 284 -KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (618)
Q Consensus 284 -~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~ 362 (618)
-..-...-++|.|+.-+.+....+|..+-.++..+....+. ..+++.++.-+++.++.+|..++..+..+..
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 00000122689999999888888888777777666532122 2257788888999999999999999999865
Q ss_pred CCCcchhhHhcCCH---HHHHHhhcCCChhHHHHHHHHHHHhhc
Q 007104 363 DMHNQAGIAHNGGL---VPLLKLLDSKNGSLQHNAAFALYGLAD 403 (618)
Q Consensus 363 ~~~~~~~l~~~~~l---~~L~~ll~~~~~~v~~~a~~~L~~l~~ 403 (618)
..... ...++ +.+..++.+.|..||..|+.++..+-.
T Consensus 197 ~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 197 NAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred hcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 32221 23467 889999999999999999999987753
No 131
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=97.05 E-value=0.00012 Score=62.48 Aligned_cols=57 Identities=11% Similarity=0.264 Sum_probs=27.6
Q ss_pred EEEEE-CCeEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhCCc
Q 007104 552 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFDEFCA 612 (618)
Q Consensus 552 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~ 612 (618)
|++.. +|..|.+|+.+ +..|++|+.||.+.. ....|.+++|+..+++.+++|+|+..
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~~Ipl~~V~~~iL~kVieyc~~h~ 63 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC---VDNGVPLPNVTSKILAKVIEYCKRHV 63 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC---------------CCTTSCHHHHHHHHHC-----
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC---CCCceeCCcCcHHHHHHHHHHHHHcc
Confidence 44443 68999999998 789999999997642 34589999999999999999999975
No 132
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.04 E-value=0.0075 Score=54.07 Aligned_cols=177 Identities=13% Similarity=0.172 Sum_probs=127.6
Q ss_pred HHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc--CChhhHHHHHhCC
Q 007104 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNG 157 (618)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~~~~~g 157 (618)
...|+..|..++++++.+..|+++++.-.|-++|+..+... |++ -+|..++..++.+. ++++.-..+...+
T Consensus 73 VcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r------~fE-~LRLtsLGVIgaLvK~dd~eVi~fLL~tE 145 (268)
T 2fv2_A 73 VCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTR------PFE-YLRLTSLGVIGALVKTDEQEVINFLLTTE 145 (268)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSH------HHH-HHHHHHHHHHHHHGGGCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCC------cch-hhhhhHHHHHHHHhccCcHHHHHHHHhhh
Confidence 45667777888899999999999999889999998876532 222 68999999999999 8888888888999
Q ss_pred cHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhH------HHH-hcCChH-HHHHhhcCCCHHHHHHHHH
Q 007104 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT------RVR-MEGGIP-PLVELLEFTDTKVQRAAAG 229 (618)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~------~~~-~~~~i~-~L~~ll~~~~~~v~~~a~~ 229 (618)
.+|..++.+...+. -.+..|..++..+..++..... .+. -...+. .+..+.+.+++.+..+..+
T Consensus 146 iiplCLrime~Gse--------lSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiir 217 (268)
T 2fv2_A 146 IIPLCLRIMESGSE--------LSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVR 217 (268)
T ss_dssp HHHHHHHHHHHSCH--------HHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhhccH--------HHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 99999999999876 6677788888887764433221 111 112232 3334556788999999999
Q ss_pred HHHHhhcCCcccHHHHHhc-------CCHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 007104 230 ALRTLAFKNDENKNQIVEC-------NALPTLILMLRSEDSAIHYEAVGVIGNL 276 (618)
Q Consensus 230 ~L~~l~~~~~~~~~~~~~~-------~~~~~L~~ll~~~~~~v~~~a~~~L~~l 276 (618)
+-..|+. ++..++.+... |.+. .++ .+|+.++.+-...+.|+
T Consensus 218 cYlRLsd-n~rar~aL~~~LP~~Lrd~tf~---~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 218 CYLRLSD-NPRAREALRQCLPDQLKDTTFA---QVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHHHHTT-SHHHHHHHHHHSCGGGTSSTTH---HHH-TSCHHHHHHHHHHHHHS
T ss_pred HHHHHhc-CHHHHHHHHHhCcHHhhChHHH---HHH-hcCHHHHHHHHHHHHhc
Confidence 9999996 67776665432 2222 222 34677777766666665
No 133
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.87 E-value=0.023 Score=52.35 Aligned_cols=178 Identities=10% Similarity=-0.007 Sum_probs=119.4
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhh----CCCCHHHHHHHHHHHHHhhc---CCCcc
Q 007104 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML----QSPDVQLREMSAFALGRLAQ---DMHNQ 367 (618)
Q Consensus 295 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL----~~~~~~v~~~a~~~L~~l~~---~~~~~ 367 (618)
.+...+-+.++.-+..++..|.......+. .+. ..++.++.++ .++++.+...++.+|..+.. ....+
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPR---SLL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 455556666777777777777666533332 221 1334444443 47899999888888888642 11111
Q ss_pred hhhH-hcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHh
Q 007104 368 AGIA-HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 446 (618)
Q Consensus 368 ~~l~-~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (618)
..-. ....+|.|+.-+.+....+|..+-.++..++.... .
T Consensus 125 ~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~---------------------------------------~ 165 (266)
T 2of3_A 125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG---------------------------------------P 165 (266)
T ss_dssp CCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC---------------------------------------H
T ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC---------------------------------------H
Confidence 1111 12357788888888888899988888877652110 1
Q ss_pred hhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCch---HHHHHHhcCCChhhhhhHHHHHHHhhhhh
Q 007104 447 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGL---ELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (618)
Q Consensus 447 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l---~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (618)
+.+++.+++-+.+.+...+..++..+..+....... ...++ +.+..++.+.|..||.+|..++..+-++.
T Consensus 166 ~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 166 LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 235566777788889999999999998885333222 23478 99999999999999999999999888764
No 134
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=96.86 E-value=0.0026 Score=49.88 Aligned_cols=66 Identities=12% Similarity=0.119 Sum_probs=52.7
Q ss_pred cEEEEECCeEEehhHHHHhcCC-HHHHHhhcCCCC----CCCCCceecCCCCHHHHHHHHHHHhCCccccCC
Q 007104 551 DVTFLVEGRRFYAHRICLLASS-DAFRAMFDGGYR----EKDARDIEIPNIRWEVFELMMRFDEFCAFNLSS 617 (618)
Q Consensus 551 Dv~~~~~~~~~~~h~~il~~~s-~~f~~~~~~~~~----e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~~ 617 (618)
-|.+.|+|..|...+..|.... .+|.+||.+... ....+++-+ |-+|..|+.+|+|+.+|++.++.
T Consensus 7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~~p~ 77 (107)
T 3drz_A 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINK 77 (107)
T ss_dssp EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCCCCT
T ss_pred EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeCCCC
Confidence 4778999999999999999776 478999976421 123456666 78999999999999999987753
No 135
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.81 E-value=0.0078 Score=60.24 Aligned_cols=237 Identities=16% Similarity=0.097 Sum_probs=146.4
Q ss_pred hHHHHHHHHHHHHhc--CChh-hHHHHHhCC-cHHHHHHHHhhccCCCC-cccchHHHHHHHHHHHHhhhcCchhhHHHH
Q 007104 130 HEVEKGSAFALGLLA--VKPE-HQQLIVDNG-ALSHLVNLLKRHMDSNC-SRAVNSVIRRAADAITNLAHENSSIKTRVR 204 (618)
Q Consensus 130 ~~v~~~a~~~L~~l~--~~~~-~~~~~~~~g-~l~~L~~lL~~~~~~~~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 204 (618)
|++|..|+-+|..+. .... .+....+.. ++..++-+.-+.-.+.. .+..-++|+.|+.+|+.+ ..-+..
T Consensus 188 WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e----- 261 (800)
T 3oc3_A 188 WYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP----- 261 (800)
T ss_dssp HHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS-----
T ss_pred hhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh-----
Confidence 499999999998887 2110 000000001 12333323223222211 123338999999999999 544432
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHH
Q 007104 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (618)
Q Consensus 205 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 284 (618)
..++..++..+..+.++++..++-.|..+.. -.. . -.++++.++..|++.+.+|+..|+.+|.-++ .+...
T Consensus 262 -~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~D---LL~-~--Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~l 332 (800)
T 3oc3_A 262 -NDIIEQLVGFLDSGDWQVQFSGLIALGYLKE---FVE-D--KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDSL 332 (800)
T ss_dssp -CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGG---GCC-C--HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSSTH
T ss_pred -HHHHHHHHhhcCCCCeeehhhhHHHHHHHHH---HHH-H--HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhhH
Confidence 2345555566678889999999999999821 111 1 2356788888899999999999999999997 22222
Q ss_pred HHHHhcCCHHHHHHhhcCCC--hhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 007104 285 KEVLAAGALQPVIGLLSSCC--SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (618)
Q Consensus 285 ~~~~~~~~l~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~ 362 (618)
.. ++..+...|.+.+ ..........|+.+++..... -.+...+|.|..++.++-+.||.+++.+|..+.
T Consensus 333 ~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL- 403 (800)
T 3oc3_A 333 DL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS- 403 (800)
T ss_dssp HH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC-
T ss_pred HH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH-
Confidence 22 3445556665432 223344455666666443211 112368899999999999999999999987776
Q ss_pred CCCcchhhHhcCCHHH-HHHhhcCCChhHHHHHHHHHH
Q 007104 363 DMHNQAGIAHNGGLVP-LLKLLDSKNGSLQHNAAFALY 399 (618)
Q Consensus 363 ~~~~~~~l~~~~~l~~-L~~ll~~~~~~v~~~a~~~L~ 399 (618)
+ ...+.. +.+++-..+.+++..+..+..
T Consensus 404 ---~------~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 404 ---E------ESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp ---C------HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred ---h------hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1 112222 335566778888887777664
No 136
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.76 E-value=0.096 Score=49.31 Aligned_cols=204 Identities=14% Similarity=0.122 Sum_probs=147.5
Q ss_pred HHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHH----Hh-cCChHHHHHhhcCCCHHHHH
Q 007104 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRV----RM-EGGIPPLVELLEFTDTKVQR 225 (618)
Q Consensus 151 ~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~----~~-~~~i~~L~~ll~~~~~~v~~ 225 (618)
..+...+.+..|+..|..-+- +.+..+..++.++.......+... .. ...+..|+..-+ ++++..
T Consensus 72 ~ei~~~dll~~Li~~l~~L~f--------E~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl 141 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDF--------EGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIAL 141 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCH--------HHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHH
T ss_pred HHHHHhCHHHHHHHhcccCCc--------hhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHh
Confidence 344556778888888877654 889999999999887555432222 11 122233333333 345555
Q ss_pred HHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcC---CHHHHHHhhcC
Q 007104 226 AAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG---ALQPVIGLLSS 302 (618)
Q Consensus 226 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~l~~L~~ll~~ 302 (618)
.+-..|+.+.. .+.....+...+.+..+.+.++.++-++...|..++..+...........+... ++.....++.+
T Consensus 142 ~~G~mLRecir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S 220 (341)
T 1upk_A 142 NCGIMLRECIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHS 220 (341)
T ss_dssp HHHHHHHHHHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence 66677777776 566777777888889999999999999999999999998776666656666543 56778889999
Q ss_pred CChhHHHHHHHHHHHHhcCChhhH---HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC
Q 007104 303 CCSESQREAALLLGQFAATDSDCK---VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH 365 (618)
Q Consensus 303 ~~~~~~~~a~~~L~~l~~~~~~~~---~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 365 (618)
++.-+++.++..|+.+........ +.+.+..-+..++.+|++....++..|.....-...++.
T Consensus 221 ~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 221 ENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred CcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence 999999999999999975432221 222345567889999999999999999999888776543
No 137
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=96.73 E-value=0.002 Score=50.70 Aligned_cols=59 Identities=19% Similarity=0.405 Sum_probs=45.0
Q ss_pred cEEEE-ECCeEEehhHHHHhcCCHHHHHhhcC--CCCCCCCCceecCCCCHHHHHHHHHHHhC
Q 007104 551 DVTFL-VEGRRFYAHRICLLASSDAFRAMFDG--GYREKDARDIEIPNIRWEVFELMMRFDEF 610 (618)
Q Consensus 551 Dv~~~-~~~~~~~~h~~il~~~s~~f~~~~~~--~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt 610 (618)
-|++. .+|..|.+++.+ +..|..++.|+.. .+.|.....|.+++|+..+++.+++|+|.
T Consensus 18 ~v~L~SsDG~~F~V~~~~-A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~ 79 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTY 79 (112)
T ss_dssp EEEEECTTSCEEEEEHHH-HHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEECHHH-HHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHH
Confidence 35555 478999999995 6799999999974 34565567899999999999999999975
No 138
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.16 E-value=0.46 Score=42.74 Aligned_cols=173 Identities=12% Similarity=0.105 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCC-----HHHHHHHHHHHHHhhcC-CcccHHHHHhcCCHHHH
Q 007104 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD-----TKVQRAAAGALRTLAFK-NDENKNQIVECNALPTL 254 (618)
Q Consensus 181 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~-----~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L 254 (618)
-..+|+..|..++. +++.+..+...++.-.|..+++..+ +.+|..++++++.+... +++....+.+.+++|..
T Consensus 72 RVcnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplC 150 (268)
T 2fv2_A 72 RVCNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLC 150 (268)
T ss_dssp HHHHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHH
Confidence 34566777777786 8889999999988888888886543 57999999999999863 44556667889999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHh--------cCCHHH-HHHhhcCCChhHHHHHHHHHHHHhcCChhh
Q 007104 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA--------AGALQP-VIGLLSSCCSESQREAALLLGQFAATDSDC 325 (618)
Q Consensus 255 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--------~~~l~~-L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 325 (618)
++.++.+++-.+..|..++..+..++... ..+.. ..++.. +..+..++++...+...++-..++ .++..
T Consensus 151 Lrime~GselSKtvAtfIlqKIL~dd~GL-~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLs-dn~ra 228 (268)
T 2fv2_A 151 LRIMESGSELSKTVATFILQKILLDDTGL-AYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS-DNPRA 228 (268)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHSHHHH-HHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-TSHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHHhccchhH-HHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh-cCHHH
Confidence 99999999999999999888886553321 21111 012222 223445667788888888888885 44555
Q ss_pred HHHHHh-------cCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 007104 326 KVHIVQ-------RGAVRPLIEMLQSPDVQLREMSAFALGRL 360 (618)
Q Consensus 326 ~~~l~~-------~~~~~~L~~lL~~~~~~v~~~a~~~L~~l 360 (618)
+..+.. .|.+. .++ .+|+.++.+-...+.|+
T Consensus 229 r~aL~~~LP~~Lrd~tf~---~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 229 REALRQCLPDQLKDTTFA---QVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHHHHHHSCGGGTSSTTH---HHH-TSCHHHHHHHHHHHHHS
T ss_pred HHHHHHhCcHHhhChHHH---HHH-hcCHHHHHHHHHHHHhc
Confidence 554432 12222 222 24677777766666665
No 139
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.12 E-value=0.051 Score=48.42 Aligned_cols=142 Identities=15% Similarity=0.086 Sum_probs=98.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHH-hhcCCChhHHHHHHHHHHHHhc-CChhhHHH
Q 007104 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG-LLSSCCSESQREAALLLGQFAA-TDSDCKVH 328 (618)
Q Consensus 251 ~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~-ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~~ 328 (618)
++....+.+++..++|..|+..|+.+ .... ..++.+.. +..+.++.+++.++.++..++. .+++
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---- 138 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---- 138 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----
Confidence 34455666788889999999998887 3221 14566666 5567899999999999999874 3333
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcC-Ccc
Q 007104 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDN 407 (618)
Q Consensus 329 l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~ 407 (618)
..++.+..++.++++.+|..|...+.-.+..... ..--...++.|..+..+++.-||....+.|..++.. ++-
T Consensus 139 ----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~--k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 139 ----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYF--KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp ----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTT--TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchh--hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHH
Confidence 2578889999999999999988887654432111 000111345556667778899999999999999965 443
Q ss_pred hhHHH
Q 007104 408 VADFI 412 (618)
Q Consensus 408 ~~~l~ 412 (618)
...++
T Consensus 213 V~~~~ 217 (240)
T 3l9t_A 213 VKIEL 217 (240)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33443
No 140
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.05 E-value=2.6 Score=47.34 Aligned_cols=177 Identities=14% Similarity=0.080 Sum_probs=107.2
Q ss_pred hHHHHHHHHHHHHHhccC-----hhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc--CChh
Q 007104 76 DRAAAKRATHVLAELAKN-----EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPE 148 (618)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~-----~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~ 148 (618)
+..++.-|+.+|.+.... +......++...+..+...-..+.. ...++.++.+.+.++..++ .-|+
T Consensus 74 ~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~-------~e~~~~vinKLa~~La~I~k~~~P~ 146 (1073)
T 3gjx_A 74 NMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTC-------VEKEKVYIGKLNMILVQILKQEWPK 146 (1073)
T ss_dssp SHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTCGGG-------GTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHccCccc-------cccchHHHHHHHHHHHHHHHHhChh
Confidence 567899999999887652 2233333444445555444322210 0012366778888888887 2222
Q ss_pred hHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCc-------------hhhHHHHhcCChHHHHHh
Q 007104 149 HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-------------SIKTRVRMEGGIPPLVEL 215 (618)
Q Consensus 149 ~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~-------------~~~~~~~~~~~i~~L~~l 215 (618)
. -.+.++.++.+++.+. ......+.+|..|+.+-- ..+..+.. ..+.++.+
T Consensus 147 ~-----Wp~fi~dLv~~~~~~~---------~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~--~~~~Il~l 210 (1073)
T 3gjx_A 147 H-----WPTFISDIVGASRTSE---------SLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCN--EFSQIFQL 210 (1073)
T ss_dssp T-----CTTHHHHHHHHHHHCH---------HHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHH--TCHHHHHH
T ss_pred h-----ccHHHHHHHHHhCCCH---------HHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH--HHHHHHHH
Confidence 1 2356777777775431 455667788887776411 01122222 24445444
Q ss_pred h----c-CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHH-HhhcCCCHHHHHHHHHHHHHHhcC
Q 007104 216 L----E-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSEDSAIHYEAVGVIGNLVHS 279 (618)
Q Consensus 216 l----~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~-~ll~~~~~~v~~~a~~~L~~l~~~ 279 (618)
+ . ..++.+...++.+|..... . -....+.+.+.++.++ ..| .+++++..|+.||..+...
T Consensus 211 l~~iL~~~~~~~lv~~~L~~L~~~~s-W-I~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 211 CQFVMENSQNAPLVHATLETLLRFLN-W-IPLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHTT-T-SCTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHH-h-cCHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 3 2 3577888888999988875 2 2345677788888774 666 4678999999999998764
No 141
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=95.93 E-value=2.7 Score=47.31 Aligned_cols=319 Identities=9% Similarity=0.095 Sum_probs=157.9
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHH-HHhhcCCCCCccccCCCcchhHHHHHHH
Q 007104 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPAL-VKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (618)
Q Consensus 59 v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L-v~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (618)
.+.+++++...+... .+..+...++.+|....+--. ...++..+.++.| ..+|. + |+++..|+
T Consensus 204 ~~~Il~ll~~iL~~~-~~~~lv~~~L~~L~~~~sWI~-i~~i~~~~ll~~L~~~~L~--~------------~~~r~aA~ 267 (1073)
T 3gjx_A 204 FSQIFQLCQFVMENS-QNAPLVHATLETLLRFLNWIP-LGYIFETKLISTLIYKFLN--V------------PMFRNVSL 267 (1073)
T ss_dssp CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTTSC-THHHHSSSHHHHHHHHTSS--S------------HHHHHHHH
T ss_pred HHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHhcC-HHHhccchHHHHHHHHhcC--C------------hHHHHHHH
Confidence 445555555444322 234456667788888877311 2356778888887 46663 2 38999999
Q ss_pred HHHHHhc-C-ChhhHHHHHh--CCcHHHHHHHHhhccCC-----CCcccchHHHHHHHHHHHHhhhcC-------chhhH
Q 007104 138 FALGLLA-V-KPEHQQLIVD--NGALSHLVNLLKRHMDS-----NCSRAVNSVIRRAADAITNLAHEN-------SSIKT 201 (618)
Q Consensus 138 ~~L~~l~-~-~~~~~~~~~~--~g~l~~L~~lL~~~~~~-----~~~~~~~~~~~~a~~~L~~L~~~~-------~~~~~ 201 (618)
.+|..+. . .+++...+.. .+.+..+..++....+- .....+.+.....+.++..+.... +..+.
T Consensus 268 dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~ 347 (1073)
T 3gjx_A 268 KCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLRE 347 (1073)
T ss_dssp HHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchH
Confidence 9999988 3 2333333221 11222222222111000 000111255555666666555422 11111
Q ss_pred HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC----Cc-----c------------cHHHHHh---cCCHHHHHHh
Q 007104 202 RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK----ND-----E------------NKNQIVE---CNALPTLILM 257 (618)
Q Consensus 202 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~-----~------------~~~~~~~---~~~~~~L~~l 257 (618)
.+ ..++..++.+...++.++...+...-..+... .+ . .+..+.. ..+...++.-
T Consensus 348 ~l--~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~ 425 (1073)
T 3gjx_A 348 AL--MEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSR 425 (1073)
T ss_dssp HH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHT
T ss_pred HH--HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHh
Confidence 11 11344455666678888887777665545431 10 0 0111110 1122233333
Q ss_pred hcCCC--------------------H-----HHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcC--CChhHHHH
Q 007104 258 LRSED--------------------S-----AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQRE 310 (618)
Q Consensus 258 l~~~~--------------------~-----~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~~~~~ 310 (618)
+..++ . .+...++..+.++ .......+ .++.+.+.+.. .+|...+.
T Consensus 426 m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l---~~~~~~~i----~~~~l~~~~~~~~~sW~~lea 498 (1073)
T 3gjx_A 426 MAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHL---DYVDTEII----MTKKLQNQVNGTEWSWKNLNT 498 (1073)
T ss_dssp CCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHH---CHHHHHHH----HHHHHHHHHTSCCCCHHHHHH
T ss_pred cCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcC---CHHHHHHH----HHHHHHHHhcCCCCCHHHHhH
Confidence 32111 0 1222233333333 22211111 23334443443 46889999
Q ss_pred HHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCC-----CHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcC
Q 007104 311 AALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-----DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS 385 (618)
Q Consensus 311 a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~-----~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~ 385 (618)
++|+++.++..-......-.-..+++.|+.+...+ .+.++...+++++..+..-.....+. ...+..|++.+.+
T Consensus 499 ~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L-~~vl~~L~~~m~~ 577 (1073)
T 3gjx_A 499 LCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFL-KTVVNKLFEFMHE 577 (1073)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH-HHHHHHHHHHTTC
T ss_pred HHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHH-HHHHHHHHHHHhc
Confidence 99999999743222111111133566666666433 23455566688888765322222222 1234556677788
Q ss_pred CChhHHHHHHHHHHHhhc
Q 007104 386 KNGSLQHNAAFALYGLAD 403 (618)
Q Consensus 386 ~~~~v~~~a~~~L~~l~~ 403 (618)
.++.|+.+|+.++..++.
T Consensus 578 ~~~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 578 THDGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp CSTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 899999999999999984
No 142
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.85 E-value=2.4 Score=48.87 Aligned_cols=260 Identities=13% Similarity=0.085 Sum_probs=138.8
Q ss_pred HhHHHHHHHHHHHHHhccC-----hhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc--CCh
Q 007104 75 ADRAAAKRATHVLAELAKN-----EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKP 147 (618)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~-----~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~ 147 (618)
.+..++..|+..|.+.... ++.....++..++..+...-..... .++.++...+.++..++ +-|
T Consensus 59 ~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~---------~~~~vr~kla~~la~Ia~~d~p 129 (1204)
T 3a6p_A 59 QVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILE---------EENHIKDALSRIVVEMIKREWP 129 (1204)
T ss_dssp SCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTS---------SCHHHHHHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhcccccc---------ccHHHHHHHHHHHHHHHHHhCc
Confidence 3667899999999987641 2223333333344443332111000 01389999999999988 223
Q ss_pred hhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCc------hhhH-----HHHhc--CChHHHHH
Q 007104 148 EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS------SIKT-----RVRME--GGIPPLVE 214 (618)
Q Consensus 148 ~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~------~~~~-----~~~~~--~~i~~L~~ 214 (618)
+. -.+.++.++.++... . ...+.++.+|..++.+.. ..+. .+... .+++.+..
T Consensus 130 ~~-----Wp~ll~~L~~~~~~~-~--------~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~ 195 (1204)
T 3a6p_A 130 QH-----WPDMLIELDTLSKQG-E--------TQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLN 195 (1204)
T ss_dssp TT-----CTTHHHHHHHHHHTC-H--------HHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred cc-----chHHHHHHHHHhcCC-H--------HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 235678888888652 1 456778888888876311 1111 11111 12223333
Q ss_pred hhcC-------------------CCHHHHHHHHHHHHHhhcCCcccHHHHHhcC--CHHHHHHhhcCCCHHHHHHHHHHH
Q 007104 215 LLEF-------------------TDTKVQRAAAGALRTLAFKNDENKNQIVECN--ALPTLILMLRSEDSAIHYEAVGVI 273 (618)
Q Consensus 215 ll~~-------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~~~~L~~ll~~~~~~v~~~a~~~L 273 (618)
++.. .+..+...++.++.+... . .....+.+.. .++.+..++. +++++..|+.||
T Consensus 196 iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~-W-i~~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL 271 (1204)
T 3a6p_A 196 TLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYID-W-VSMSHITAENCKLLEILCLLLN--EQELQLGAAECL 271 (1204)
T ss_dssp HHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTT-T-SCHHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHh-c-cCHHHHHhccchHHHHHHHHcC--CHHHHHHHHHHH
Confidence 3322 123466677777766543 1 1222333332 6677776665 467899999999
Q ss_pred HHHhcCC--hhHHHHHHhc---CCHHHHHHhhc--------CCChhHHHHHHHHHHHHhcCChhhHHHHHh---------
Q 007104 274 GNLVHSS--PNIKKEVLAA---GALQPVIGLLS--------SCCSESQREAALLLGQFAATDSDCKVHIVQ--------- 331 (618)
Q Consensus 274 ~~l~~~~--~~~~~~~~~~---~~l~~L~~ll~--------~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~--------- 331 (618)
..+.... +..+..++.. ..+..++..+. +.+.+..+..+.++..+.. .....+..
T Consensus 272 ~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~---~l~~l~~~~~~~~~~~~ 348 (1204)
T 3a6p_A 272 LIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGN---QLCALLGADSDVETPSN 348 (1204)
T ss_dssp HHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHH---HHHHHHHTCSSCCCCTT
T ss_pred HHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHH---HHHHHHhccccccChhH
Confidence 9998653 2222222211 11223444432 1123455566666666641 11111110
Q ss_pred -cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 007104 332 -RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM 364 (618)
Q Consensus 332 -~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 364 (618)
.++++.++.+..+++..+...++..-..+..+.
T Consensus 349 l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~ 382 (1204)
T 3a6p_A 349 FGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHE 382 (1204)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcc
Confidence 245777888888888888777776555566543
No 143
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.81 E-value=0.081 Score=47.15 Aligned_cols=136 Identities=14% Similarity=0.073 Sum_probs=98.2
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHH-hhcCCChhHHHHHHHHHHHhhc--CCcchhH
Q 007104 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLK-LLDSKNGSLQHNAAFALYGLAD--NEDNVAD 410 (618)
Q Consensus 334 ~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~-ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~ 410 (618)
.++....+.+++...+|..|+.+|+.+ . .. ...++.+.. +..+.++.|++.++.++..++. +++.
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~--~~------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--- 139 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-S--KD------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--- 139 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-T--TS------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-c--Cc------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---
Confidence 345566677788889999999988888 3 11 123555555 5567899999999999999874 3321
Q ss_pred HHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCc
Q 007104 411 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGG 490 (618)
Q Consensus 411 l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 490 (618)
.++.+.....++++.+|+.|...+...+..+..+. .-.-+
T Consensus 140 --------------------------------------~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~--dp~~l 179 (240)
T 3l9t_A 140 --------------------------------------ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKE--NPNEA 179 (240)
T ss_dssp --------------------------------------THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTT--CHHHH
T ss_pred --------------------------------------HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhc--CHHHH
Confidence 34557788999999999999998866543221111 11225
Q ss_pred hHHHHHHhcCCChhhhhhHHHHHHHhhhhhc
Q 007104 491 LELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (618)
Q Consensus 491 l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (618)
++.|..+..+++.-||...+++|..++++.+
T Consensus 180 l~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 180 IRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp HHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 6777777788999999999999999999743
No 144
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.69 E-value=1.4 Score=41.61 Aligned_cols=178 Identities=12% Similarity=0.084 Sum_probs=105.2
Q ss_pred CHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHH-HHhhccCCCCcccchHHHH
Q 007104 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVN-LLKRHMDSNCSRAVNSVIR 183 (618)
Q Consensus 105 ~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~-lL~~~~~~~~~~~~~~~~~ 183 (618)
.+..+..+++-+. +.+-.++..+.-++.++.....+...+.-..++. ++....... .+..+-
T Consensus 104 ~l~~l~kil~WP~-------------~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~----~p~n~m 166 (304)
T 3ebb_A 104 QLQILWKAINCPE-------------DIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKG----KPANQL 166 (304)
T ss_dssp HHHHHHHHHTSCT-------------TTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTS----CHHHHH
T ss_pred HHHHHHHHHcCCH-------------HhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCC----ChHHHH
Confidence 3566777764333 3455677777766677776666655444344443 333222111 125578
Q ss_pred HHHHHHHHhhhcCchhhHHHHhc--CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc--cHHHHHhcCCHHHHHHhhc
Q 007104 184 RAADAITNLAHENSSIKTRVRME--GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE--NKNQIVECNALPTLILMLR 259 (618)
Q Consensus 184 ~a~~~L~~L~~~~~~~~~~~~~~--~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~~~~~L~~ll~ 259 (618)
.+++++.|+.. ++..+..+... .+++.+...+.+++..++..++..+.|++..... ..+.. ..++..+..+++
T Consensus 167 l~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~--~~ll~~l~~il~ 243 (304)
T 3ebb_A 167 LALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK--AQCLSLISTILE 243 (304)
T ss_dssp HHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH--HHHHHHHHHHHT
T ss_pred HHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH--HHHHHHHHHHHh
Confidence 89999999998 55555544431 2344555555567889999999999999863111 11111 113444455554
Q ss_pred -CCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcC
Q 007104 260 -SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302 (618)
Q Consensus 260 -~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 302 (618)
..+.+....++-+|+++...+.+..+....-|....+-.+...
T Consensus 244 ~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 244 VVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp TCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred ccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence 4588999999999999998766554433344444444444444
No 145
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=95.15 E-value=0.5 Score=44.27 Aligned_cols=136 Identities=16% Similarity=0.252 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhc
Q 007104 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (618)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~ 259 (618)
.+...+...|.-|. ++...-.-+...+++..+...++-++.++.+..++.|...+.. ...+. .--.+.+|.++..+.
T Consensus 258 QVvtR~FDLL~LLm-HdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDa-ksL~~-t~L~e~LPFi~~~i~ 334 (619)
T 3c2g_A 258 QVIIRTFDLLGLLL-HDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDA-KALAK-TPLENILPFLLRLIE 334 (619)
T ss_dssp HHHHHHHHHHHHHC-CSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTC-GGGGT-SCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecch-HHHhh-ccccccchHHHHHhc
Confidence 34444555554444 4666667788899999999999999999999999999998852 22211 111345788887776
Q ss_pred -CCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCC-------ChhHHHHHHHHHHHH
Q 007104 260 -SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-------CSESQREAALLLGQF 318 (618)
Q Consensus 260 -~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-------~~~~~~~a~~~L~~l 318 (618)
+++.++.+...+.|+|...+....++..+..|+++.|-..+... +..-+..+|.+++|.
T Consensus 335 ~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 335 IHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp HCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred cCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 88999999999999999988777888888899999988877532 223345566666654
No 146
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=95.12 E-value=0.034 Score=47.53 Aligned_cols=60 Identities=20% Similarity=0.356 Sum_probs=45.6
Q ss_pred cEEEEE-CCeEEehhHHHHhcCCHHHHHhhcCCCC----CCCCCceecCCCCHHHHHHHHHHHhCC
Q 007104 551 DVTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYR----EKDARDIEIPNIRWEVFELMMRFDEFC 611 (618)
Q Consensus 551 Dv~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~----e~~~~~i~~~~~~~~~~~~~l~~~Yt~ 611 (618)
.|++.. +|..|.+++.+ +..|.+++.|+..... +.....|.+++|+..+++.+++|+|.-
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h 72 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHH 72 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHT
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHc
Confidence 345544 68899999998 6789999999975322 223468999999999999999999864
No 147
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.41 E-value=0.57 Score=44.20 Aligned_cols=140 Identities=14% Similarity=0.070 Sum_probs=81.8
Q ss_pred HHHhhcC-CCHHHHHHHHHHHHHhhcCCcccHHHHHhc--CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHH
Q 007104 212 LVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVEC--NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (618)
Q Consensus 212 L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (618)
+...+.+ ..+..+..++++++|+-. .+..++.+... .+++.+...+.+.+..++..+..++.|++.........-.
T Consensus 152 l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~ 230 (304)
T 3ebb_A 152 LINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG 230 (304)
T ss_dssp HHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH
T ss_pred HHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH
Confidence 3344432 346678899999999987 56666665542 2344444455567889999999999999753111000000
Q ss_pred hcCCHHHHHHhhcC-CChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHH
Q 007104 289 AAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREM 352 (618)
Q Consensus 289 ~~~~l~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~-~~~~v~~~ 352 (618)
...++..+..++.. .+.+....++.+|+++...+..........++-..+-..... ..+++.+.
T Consensus 231 ~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~ 296 (304)
T 3ebb_A 231 KAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSEC 296 (304)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHH
Confidence 11133444455543 477888999999999987655444333333444444444444 34555444
No 148
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.36 E-value=4.5 Score=40.13 Aligned_cols=162 Identities=15% Similarity=0.116 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHHhcc-ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHH
Q 007104 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (618)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 154 (618)
+...+..|+..|....+ -|+..+. ++..++.++.+.+. .||.+|.+.|..+|.+ ++...
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~------------~IR~qaik~Lp~~ck~-~~i~k-- 100 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDV------------SIRRQAIKELPQFATG-ENLPR-- 100 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSH------------HHHHHHHHHGGGGCCT-TCHHH--
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccH------------HHHHHHHHhhHHHhhh-hhhhh--
Confidence 45578889999999888 4665544 47899999998887 9999999999999955 54333
Q ss_pred hCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 007104 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (618)
Q Consensus 155 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 234 (618)
+...|+++|...+. .-....-.+|..+...++. +.+..+...+..+++.+|..++..|..-
T Consensus 101 ---iaDvL~QlLqtdd~--------~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~k 161 (507)
T 3u0r_A 101 ---VADILTQLLQTDDS--------AEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTK 161 (507)
T ss_dssp ---HHHHHHHHTTCCCH--------HHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhccch--------HHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 35778888887654 5555566677777765553 2345555555557888999888888655
Q ss_pred hcC-CcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 007104 235 AFK-NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL 276 (618)
Q Consensus 235 ~~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l 276 (618)
... ..+....-++.-++..+.++|++-..+--.....+|..+
T Consensus 162 l~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~l 204 (507)
T 3u0r_A 162 LKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGL 204 (507)
T ss_dssp GGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTS
T ss_pred HhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhc
Confidence 432 111111222223445566677665544444445555554
No 149
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=94.06 E-value=2.6 Score=48.56 Aligned_cols=135 Identities=10% Similarity=0.012 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCC--cHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCc--hhhHHHHhc
Q 007104 131 EVEKGSAFALGLLAVKPEHQQLIVDNG--ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS--SIKTRVRME 206 (618)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~g--~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~--~~~~~~~~~ 206 (618)
.++..++.++.+...-... ..+.... .++.+..++... +++..|+.+|..+..... ..+..+...
T Consensus 222 ~l~~~aL~~l~~~l~Wi~~-~~i~~~~~~ll~~l~~~l~~~----------~lr~~A~ecL~~i~s~~~~~~~~~~li~~ 290 (1204)
T 3a6p_A 222 RVGVAALNTLAGYIDWVSM-SHITAENCKLLEILCLLLNEQ----------ELQLGAAECLLIAVSRKGKLEDRKPLMVL 290 (1204)
T ss_dssp HHHHHHHHHHHTTTTTSCH-HHHHTTTSHHHHHHHHGGGCT----------TTHHHHHHHHHHHHTCCSCHHHHGGGGGG
T ss_pred HHHHHHHHHHHHHHhccCH-HHHHhccchHHHHHHHHcCCH----------HHHHHHHHHHHHHHhCCCChhhHHHHHHH
Confidence 5777888888766521111 2223322 566666555432 788999999999997442 222212110
Q ss_pred ---CChHHHHHhhc--------CCCHHHHHHHHHHHHHhhcCCcccHHHHH------h----cCCHHHHHHhhcCCCHHH
Q 007104 207 ---GGIPPLVELLE--------FTDTKVQRAAAGALRTLAFKNDENKNQIV------E----CNALPTLILMLRSEDSAI 265 (618)
Q Consensus 207 ---~~i~~L~~ll~--------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~------~----~~~~~~L~~ll~~~~~~v 265 (618)
.++..++..+. +.+.++.+..+..+..+.. .....+. . .++++.++.+..+++..+
T Consensus 291 l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~---~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~v 367 (1204)
T 3a6p_A 291 FGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGN---QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFL 367 (1204)
T ss_dssp GSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHH---HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHH
T ss_pred HhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHH---HHHHHHhccccccChhHHHHHHHHHHHHHhCccHHh
Confidence 11223444432 1235667777777777662 1111111 0 145777777888888888
Q ss_pred HHHHHHHHHHHhcC
Q 007104 266 HYEAVGVIGNLVHS 279 (618)
Q Consensus 266 ~~~a~~~L~~l~~~ 279 (618)
...++.....+...
T Consensus 368 s~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 368 RSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhc
Confidence 88888776666554
No 150
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.85 E-value=3.6 Score=37.10 Aligned_cols=162 Identities=19% Similarity=0.228 Sum_probs=103.9
Q ss_pred CChhhHHHHHhCCcHHHHHHHHhhccCCCCc---ccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCH
Q 007104 145 VKPEHQQLIVDNGALSHLVNLLKRHMDSNCS---RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDT 221 (618)
Q Consensus 145 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~---~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~ 221 (618)
....+...+ ..+|+..|+.+|......... ....+....++.||..+..........+...+++..++..+.++++
T Consensus 32 ~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~ 110 (233)
T 2f31_A 32 NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP 110 (233)
T ss_dssp SCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSH
T ss_pred CCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCc
Confidence 344566666 468899999998775432211 1123677889999999987555555555556788999999999999
Q ss_pred HHHHHHHHHHHHhhcCCc-cc-HHHHH----------hcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChh------
Q 007104 222 KVQRAAAGALRTLAFKND-EN-KNQIV----------ECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPN------ 282 (618)
Q Consensus 222 ~v~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~------ 282 (618)
.++..++..|..+|..+. .+ ...+. +..-+..++..++ +.+.+.+..+...+-.+..+.++
T Consensus 111 ~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~ 190 (233)
T 2f31_A 111 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVH 190 (233)
T ss_dssp HHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 999999999998887443 23 33332 2234566777776 45567777777766666655443
Q ss_pred HHHHHHhcCCHHHHHHhhcCCChhH
Q 007104 283 IKKEVLAAGALQPVIGLLSSCCSES 307 (618)
Q Consensus 283 ~~~~~~~~~~l~~L~~ll~~~~~~~ 307 (618)
.+..+...|+.+.+-.+-...++++
T Consensus 191 lR~ef~~~Gl~~il~~l~~~~~~~L 215 (233)
T 2f31_A 191 IRSELMRLGLHQVLQELREIENEDM 215 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHCChHHHHHHHhccCCHHH
Confidence 2344555665555554443344443
No 151
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=93.73 E-value=0.75 Score=43.12 Aligned_cols=135 Identities=16% Similarity=0.181 Sum_probs=100.7
Q ss_pred HHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHH
Q 007104 81 KRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALS 160 (618)
Q Consensus 81 ~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~ 160 (618)
.++...|.-+..+.....-+++.++|..+...++-++. ++.+...+.|...++....+..- -...+|
T Consensus 261 tR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~------------~l~RaG~KLLLQVSDaksL~~t~-L~e~LP 327 (619)
T 3c2g_A 261 IRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNN------------DLIRAGCKLLLQVSDAKALAKTP-LENILP 327 (619)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCH------------HHHHHHHHHHHHHTTCGGGGTSC-CTTHHH
T ss_pred HHHHHHHHHHhcccccccceeecccceeEEEEeecCCc------------HHHHhhhheeeeecchHHHhhcc-ccccch
Confidence 34455555555678888999999999999999998888 88889999998888665432211 134688
Q ss_pred HHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcC-------CCHHHHHHHHHHHHH
Q 007104 161 HLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-------TDTKVQRAAAGALRT 233 (618)
Q Consensus 161 ~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~-------~~~~v~~~a~~~L~~ 233 (618)
.++..+....++ ++.......|.|...+....+...+..|+++.|...+.. .+..-+..+|++++|
T Consensus 328 Fi~~~i~~h~eD-------dvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN 400 (619)
T 3c2g_A 328 FLLRLIEIHPDD-------EVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN 400 (619)
T ss_dssp HHHHHHHHCCCH-------HHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCc-------ceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence 899988866553 899999999999999888899988889999988877643 233344455555554
Q ss_pred hh
Q 007104 234 LA 235 (618)
Q Consensus 234 l~ 235 (618)
..
T Consensus 401 ~L 402 (619)
T 3c2g_A 401 CL 402 (619)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 152
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.35 E-value=2.1 Score=41.92 Aligned_cols=162 Identities=20% Similarity=0.225 Sum_probs=105.5
Q ss_pred CChhhHHHHHhCCcHHHHHHHHhhccCCCCc---ccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCH
Q 007104 145 VKPEHQQLIVDNGALSHLVNLLKRHMDSNCS---RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDT 221 (618)
Q Consensus 145 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~---~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~ 221 (618)
....+...+. .+|+..|+++|......... ..+......++.||..+..........+....++..++..+.+..+
T Consensus 98 ~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~ 176 (383)
T 3eg5_B 98 HPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP 176 (383)
T ss_dssp SCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSH
T ss_pred CccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCch
Confidence 4445666666 67899999999754321110 1123677888999999887555555556567788999999999999
Q ss_pred HHHHHHHHHHHHhhcCCc-cc-HHHHH----------hcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChh------
Q 007104 222 KVQRAAAGALRTLAFKND-EN-KNQIV----------ECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN------ 282 (618)
Q Consensus 222 ~v~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~------ 282 (618)
.++..++..|..+|.... .+ ...+. +..-+..++..++. .+.+.+..+...+-.+..+.++
T Consensus 177 ~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~ 256 (383)
T 3eg5_B 177 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVH 256 (383)
T ss_dssp HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 999999999999987443 33 33332 23446778888875 5677777777777777665443
Q ss_pred HHHHHHhcCCHHHHHHhhcCCChhH
Q 007104 283 IKKEVLAAGALQPVIGLLSSCCSES 307 (618)
Q Consensus 283 ~~~~~~~~~~l~~L~~ll~~~~~~~ 307 (618)
.+..+...|+.+.+-.+=...++++
T Consensus 257 lR~ef~~~Gl~~il~~lr~~~~~~L 281 (383)
T 3eg5_B 257 IRSELMRLGLHQVLQELREIENEDM 281 (383)
T ss_dssp HHHHHHHTTHHHHHHHHTTSCCHHH
T ss_pred HHHHHHHCChHHHHHHHhcCCChhH
Confidence 2345555666665555333334433
No 153
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=92.30 E-value=6.8 Score=44.26 Aligned_cols=174 Identities=15% Similarity=0.119 Sum_probs=106.7
Q ss_pred HHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhh----cCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 007104 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH----ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (618)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~----~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 234 (618)
+..+..+++...... .+.++..++-++++|.. .++....... ..+...+.+.+...+.+-+..++++|.|+
T Consensus 393 l~~~~~l~~~~~~~~----~~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 393 LSYARELLNTSFIRN----RPILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRAKEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHTCHHHHT----CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccc----CHHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 566666666543111 01555656666655543 2221111000 11223344455667777888999999999
Q ss_pred hcCCcccHHHHHhcCCHHHHHHhhc-------CCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhc--CCCh
Q 007104 235 AFKNDENKNQIVECNALPTLILMLR-------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS--SCCS 305 (618)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~L~~ll~-------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~ 305 (618)
.. + ..++.|.+++. +....++..|+++|..+....+.. +-+.+..++. ..+.
T Consensus 468 g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~--------v~~il~~i~~n~~e~~ 528 (1056)
T 1lsh_A 468 GQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKS 528 (1056)
T ss_dssp TC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCH
T ss_pred CC--h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH--------HHHHHHHHhcCCCCCh
Confidence 84 2 34666666663 224578899999999997665543 2345677774 3467
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCc
Q 007104 306 ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHN 366 (618)
Q Consensus 306 ~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~ 366 (618)
++|..|+..|.... |.. ..+..+...+.. ++..|.......|.+++.....
T Consensus 529 EvRiaA~~~Lm~t~---P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 529 ELRIRSCIVFFESK---PSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHHHHHHHTC---CCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHC---cCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 88888887775532 322 135666676665 7899999999999999986544
No 154
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=92.27 E-value=0.11 Score=45.21 Aligned_cols=67 Identities=12% Similarity=0.118 Sum_probs=51.7
Q ss_pred ccEEEEECCeEEehhHHHHhcCCH-HHHHhhcCCC--C--CCCCCceecCCCCHHHHHHHHHHHhCCccccCC
Q 007104 550 SDVTFLVEGRRFYAHRICLLASSD-AFRAMFDGGY--R--EKDARDIEIPNIRWEVFELMMRFDEFCAFNLSS 617 (618)
Q Consensus 550 ~Dv~~~~~~~~~~~h~~il~~~s~-~f~~~~~~~~--~--e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~~ 617 (618)
.-|.+.|+|..|...+..|....+ +|..||.+.. . ....+++-+ |-+|..|+.+|+|+.+|++.+++
T Consensus 12 ~~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DRDP~~F~~ILnyLRtG~L~lP~ 83 (202)
T 3drx_A 12 KWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINK 83 (202)
T ss_dssp CEEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-CSCSTTHHHHHHHHHHSCCCCCT
T ss_pred CEEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-cCChHHHHHHHHHhcCCccCCCC
Confidence 347788999999999999986653 7889987642 1 123446666 67999999999999999998754
No 155
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=92.13 E-value=4.8 Score=39.42 Aligned_cols=162 Identities=19% Similarity=0.229 Sum_probs=105.1
Q ss_pred ChhhHHHHHhCCcHHHHHHHHhhccCCCCc---ccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHH
Q 007104 146 KPEHQQLIVDNGALSHLVNLLKRHMDSNCS---RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTK 222 (618)
Q Consensus 146 ~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~---~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~ 222 (618)
...+...+. .+|+..|+.+|......... .........++.||..+..........+...+++..++..+.++++.
T Consensus 37 ~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~ 115 (386)
T 2bnx_A 37 PVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPN 115 (386)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHH
T ss_pred CcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCch
Confidence 345555564 57788888888765322111 11237778899999999875555666666677889999999989999
Q ss_pred HHHHHHHHHHHhhcCCc-cc-HHHHH----------hcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChh------H
Q 007104 223 VQRAAAGALRTLAFKND-EN-KNQIV----------ECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPN------I 283 (618)
Q Consensus 223 v~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~------~ 283 (618)
++..++..|..+|.... .+ ...+. +..-+..++..+. +.+.+.+..++..+-.+..+.++ .
T Consensus 116 ~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~L 195 (386)
T 2bnx_A 116 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHI 195 (386)
T ss_dssp HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 99999999998887443 23 33322 2234566777776 45667777777777777665443 3
Q ss_pred HHHHHhcCCHHHHHHhhcCCChhHH
Q 007104 284 KKEVLAAGALQPVIGLLSSCCSESQ 308 (618)
Q Consensus 284 ~~~~~~~~~l~~L~~ll~~~~~~~~ 308 (618)
+..+...|+.+.+-.+-...++++.
T Consensus 196 R~Ef~~~GL~~il~~Lr~~~~~~L~ 220 (386)
T 2bnx_A 196 RSELMRLGLHQVLQELREIENEDMK 220 (386)
T ss_dssp HHHHHHTTHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHCChHHHHHHHhccCChhHH
Confidence 4455566666665554444444443
No 156
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=91.89 E-value=0.086 Score=41.56 Aligned_cols=66 Identities=12% Similarity=0.117 Sum_probs=49.5
Q ss_pred cEEEEECCeEEehhHHHHhcCCH-HHHHhhcCCC-CCCCCCceecCCCCHHHHHHHHHHHhCCccccCC
Q 007104 551 DVTFLVEGRRFYAHRICLLASSD-AFRAMFDGGY-REKDARDIEIPNIRWEVFELMMRFDEFCAFNLSS 617 (618)
Q Consensus 551 Dv~~~~~~~~~~~h~~il~~~s~-~f~~~~~~~~-~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~~ 617 (618)
-|.+.|||..|...+..|....+ .+.+||.+.. .....+++-+ |=+|..|+.+|+|+.+|++.+++
T Consensus 6 ~V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnylR~G~l~~p~ 73 (115)
T 3kvt_A 6 RVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHYPT 73 (115)
T ss_dssp EEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCCCS
T ss_pred EEEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE-ecChHHHHHHHHHhcCCCCCCCC
Confidence 37888999999999999986643 4566665421 1223456666 67899999999999999987764
No 157
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=91.73 E-value=1.5 Score=43.07 Aligned_cols=137 Identities=14% Similarity=0.124 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHHHhhcCCCcchhhHh-cCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCc--c-hhHHHhhccccccc
Q 007104 346 DVQLREMSAFALGRLAQDMHNQAGIAH-NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED--N-VADFIRVGGVQKLQ 421 (618)
Q Consensus 346 ~~~v~~~a~~~L~~l~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~-~~~l~~~~~~~~L~ 421 (618)
+...+..++.||..+..+..+...+.. ...+..|...+.+.++.++..++..|..+|..++ + ...+.+
T Consensus 133 d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~-------- 204 (383)
T 3eg5_B 133 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLE-------- 204 (383)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHH--------
T ss_pred hHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHH--------
Confidence 557788899999999876655554444 4568889999999999999999999999987653 2 333222
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh-CCHhHHHHHHHHHHhhcCCCc-------cccceecCCchHH
Q 007104 422 DGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDD-------QRTIFIDGGGLEL 493 (618)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~-------~~~~~~~~~~l~~ 493 (618)
++.+....-...-+..++..++. .+.+.+..+...+..+..+.+ -+..+...|..+.
T Consensus 205 ---------------Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~i 269 (383)
T 3eg5_B 205 ---------------AMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQV 269 (383)
T ss_dssp ---------------HHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHH
T ss_pred ---------------HHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHH
Confidence 22222222234455667777776 477777777777777765543 2234445565555
Q ss_pred HHHHhcCCChhh
Q 007104 494 LLGLLGSTNPKQ 505 (618)
Q Consensus 494 L~~ll~~~~~~v 505 (618)
+-.+-...++.+
T Consensus 270 l~~lr~~~~~~L 281 (383)
T 3eg5_B 270 LQELREIENEDM 281 (383)
T ss_dssp HHHHTTSCCHHH
T ss_pred HHHHhcCCChhH
Confidence 555433455554
No 158
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=91.63 E-value=5.8 Score=44.82 Aligned_cols=101 Identities=18% Similarity=0.186 Sum_probs=61.6
Q ss_pred HHHHHHhhcC----CChhHHHHHHHHHHHHhc----CChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 007104 293 LQPVIGLLSS----CCSESQREAALLLGQFAA----TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM 364 (618)
Q Consensus 293 l~~L~~ll~~----~~~~~~~~a~~~L~~l~~----~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 364 (618)
+..+..++.+ .++.++..+..+++.+.. ..+.+....+ ..+...+.+.+...+..-+..++.+|+|+...
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p- 470 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRAKEEEIVLALKALGNAGQP- 470 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-
Confidence 4455666654 345667777777777752 1111110100 11223344445567788888999999999752
Q ss_pred CcchhhHhcCCHHHHHHhhcC-------CChhHHHHHHHHHHHhhcC
Q 007104 365 HNQAGIAHNGGLVPLLKLLDS-------KNGSLQHNAAFALYGLADN 404 (618)
Q Consensus 365 ~~~~~l~~~~~l~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~ 404 (618)
..++.|.+++.. ...+++..|+++|.+++..
T Consensus 471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~ 508 (1056)
T 1lsh_A 471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR 508 (1056)
T ss_dssp ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT
T ss_pred ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhh
Confidence 346677777642 2457889999999999854
No 159
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=91.56 E-value=1.5 Score=39.67 Aligned_cols=138 Identities=14% Similarity=0.127 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHHhhcCCCcchhhHh-cCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCc--c-hhHHHhhccccccc
Q 007104 346 DVQLREMSAFALGRLAQDMHNQAGIAH-NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED--N-VADFIRVGGVQKLQ 421 (618)
Q Consensus 346 ~~~v~~~a~~~L~~l~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~-~~~l~~~~~~~~L~ 421 (618)
+...+..++.+|..+..+......+.. ...+..+...+.++++.++..++..|..+|..++ + ...+.+
T Consensus 67 ~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~-------- 138 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLE-------- 138 (233)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHH--------
T ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHH--------
Confidence 456778899999999876655555444 4568888999999999999999999999886654 2 332222
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh-CCHhHHHHHHHHHHhhcCCCc-------cccceecCCchHH
Q 007104 422 DGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDD-------QRTIFIDGGGLEL 493 (618)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~-------~~~~~~~~~~l~~ 493 (618)
++......-...-+..+++.++. .+.+.+..+...+..+..+++ -+..+...|..+.
T Consensus 139 ---------------Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~i 203 (233)
T 2f31_A 139 ---------------AMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQV 203 (233)
T ss_dssp ---------------HHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHH
T ss_pred ---------------HHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHH
Confidence 11111111123344556666663 466777777777777765553 2234445565555
Q ss_pred HHHHhcCCChhhh
Q 007104 494 LLGLLGSTNPKQQ 506 (618)
Q Consensus 494 L~~ll~~~~~~v~ 506 (618)
+-.+-...++++.
T Consensus 204 l~~l~~~~~~~L~ 216 (233)
T 2f31_A 204 LQELREIENEDMK 216 (233)
T ss_dssp HHHHHHCCCHHHH
T ss_pred HHHHhccCCHHHH
Confidence 5555445565553
No 160
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=91.48 E-value=4 Score=40.47 Aligned_cols=118 Identities=19% Similarity=0.156 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhc
Q 007104 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (618)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~ 259 (618)
..++.|+..|......-|..... ++..++.++++.+..+|..|.+.|..+|.+ +... .+...|+++|+
T Consensus 43 k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~-----kiaDvL~QlLq 110 (507)
T 3u0r_A 43 KEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLP-----RVADILTQLLQ 110 (507)
T ss_dssp HHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHH-----HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhh-----hHHHHHHHHHh
Confidence 88899999999999988887654 468999999999999999999999999974 4433 34577999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHH
Q 007104 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ 317 (618)
Q Consensus 260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~ 317 (618)
..++.-....-++|..+...++.. .+..+..-+..++..+|+.++..|..
T Consensus 111 tdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 111 TDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHH
Confidence 888777777777777775555432 23334433434556677766665543
No 161
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=88.13 E-value=0.76 Score=36.63 Aligned_cols=64 Identities=20% Similarity=0.323 Sum_probs=45.8
Q ss_pred ccEEEEECCeEEehhHHHHhcCCHHHHHhhcCC----CCCCCCCceecCCCCHHHHHHHHHHHhCCccccCC
Q 007104 550 SDVTFLVEGRRFYAHRICLLASSDAFRAMFDGG----YREKDARDIEIPNIRWEVFELMMRFDEFCAFNLSS 617 (618)
Q Consensus 550 ~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~----~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~~ 617 (618)
.-|.+.|+|..|...+..|....+ .||... +.....+++-+ |=++..|+.+|+|+-+|++.+++
T Consensus 13 ~~V~LNVGG~~F~t~~~TL~~~p~---S~L~~~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnflR~G~l~~p~ 80 (124)
T 1s1g_A 13 ELIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPR 80 (124)
T ss_dssp CEEEEEETTEEEEEEHHHHTTSTT---SSTTSSGGGGTBCSSSCSEEE-CSCHHHHHHHHHHHHHSCBCCCT
T ss_pred CEEEEEeCCEEEEEeHHHHhcCCC---ceecccCCcccccCCCCcEEE-cCChHHHHHHHHHHhcCCCCCCC
Confidence 347888999999999999975432 233221 11223456666 67999999999999999987653
No 162
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=87.15 E-value=0.8 Score=37.39 Aligned_cols=64 Identities=20% Similarity=0.323 Sum_probs=45.9
Q ss_pred ccEEEEECCeEEehhHHHHhcCCHHHHHhhcCC----CCCCCCCceecCCCCHHHHHHHHHHHhCCccccCC
Q 007104 550 SDVTFLVEGRRFYAHRICLLASSDAFRAMFDGG----YREKDARDIEIPNIRWEVFELMMRFDEFCAFNLSS 617 (618)
Q Consensus 550 ~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~----~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~~ 617 (618)
.-|.+.|+|..|...+..|....+ .||... +.....+++-+ |=++..|+.+|+|+-+|++.+++
T Consensus 35 ~~V~LNVGG~~F~T~~~TL~~~P~---S~L~~~~~~~~~~~~~g~yFi-DRdp~~F~~ILnflR~G~l~~p~ 102 (140)
T 2nz0_B 35 ELIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPR 102 (140)
T ss_dssp CEEEEEETTEEEEEEHHHHHTCTT---STTTSGGGGGSEETTTTEEEE-CSCHHHHHHHHHHHHHSSBCCCT
T ss_pred CEEEEEECCEEEEeeHHHHhcCCC---eeecccCCcccccCCCCeEEE-eCCcHHHHHHHHHHhcCCcCCCC
Confidence 457889999999999999985432 233221 11123455666 67999999999999999987653
No 163
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=86.95 E-value=0.39 Score=36.65 Aligned_cols=65 Identities=15% Similarity=0.122 Sum_probs=46.1
Q ss_pred EEEEECCeEEehhHHHHhcCCH-HHHHhhcC-CCCCCCCCceecCCCCHHHHHHHHHHHhC-CccccCC
Q 007104 552 VTFLVEGRRFYAHRICLLASSD-AFRAMFDG-GYREKDARDIEIPNIRWEVFELMMRFDEF-CAFNLSS 617 (618)
Q Consensus 552 v~~~~~~~~~~~h~~il~~~s~-~f~~~~~~-~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt-~~~~~~~ 617 (618)
|.+.|+|..|...+..|...-+ .+.+|+.. .......+++-+ |=+|..|+.+|+|+-| |++.+++
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFi-DRdp~~F~~ILnflR~~G~l~~p~ 70 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF-DRNRPSFDAILYFYQSGGRLRRPV 70 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE-CSCSTTHHHHHHHHHTTSCCCCCT
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEE-cCChHHHHHHHHHHhcCCcccCCC
Confidence 6788999999999999975432 33344432 111224456666 6789999999999999 8987654
No 164
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=86.48 E-value=6.5 Score=38.52 Aligned_cols=138 Identities=14% Similarity=0.119 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHHhhcCCCcchhhH-hcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCc--c-hhHHHhhccccccc
Q 007104 346 DVQLREMSAFALGRLAQDMHNQAGIA-HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED--N-VADFIRVGGVQKLQ 421 (618)
Q Consensus 346 ~~~v~~~a~~~L~~l~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~-~~~l~~~~~~~~L~ 421 (618)
+......++.||..+..+..+...+. ...++..+...+.++++.++..++..|..+|..+. + ...+.+
T Consensus 71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~-------- 142 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLE-------- 142 (386)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHH--------
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHH--------
Confidence 45677888999999887665554444 44568888999999999999999999998886653 2 222221
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHh-hCCHhHHHHHHHHHHhhcCCCc-------cccceecCCchHH
Q 007104 422 DGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR-VAEKGVQRRVALALAHLCSPDD-------QRTIFIDGGGLEL 493 (618)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~-------~~~~~~~~~~l~~ 493 (618)
++......-...-+..++..+. +.+.+.+..+...+..+..+++ -+..+...|..+.
T Consensus 143 ---------------Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~i 207 (386)
T 2bnx_A 143 ---------------AMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQV 207 (386)
T ss_dssp ---------------HHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHH
T ss_pred ---------------HHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHH
Confidence 1111111112334455666666 4466777777777777765544 2345545555555
Q ss_pred HHHHhcCCChhhh
Q 007104 494 LLGLLGSTNPKQQ 506 (618)
Q Consensus 494 L~~ll~~~~~~v~ 506 (618)
|-.+-...++.+.
T Consensus 208 l~~Lr~~~~~~L~ 220 (386)
T 2bnx_A 208 LQELREIENEDMK 220 (386)
T ss_dssp HHHHTTCCCHHHH
T ss_pred HHHHhccCChhHH
Confidence 5555444665553
No 165
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=86.20 E-value=0.37 Score=37.23 Aligned_cols=62 Identities=13% Similarity=0.266 Sum_probs=43.9
Q ss_pred EEEEECCeEEehhHHHHhcCCHHHHHhhcCC----CCCCCCCceecCCCCHHHHHHHHHHHhCCccccCC
Q 007104 552 VTFLVEGRRFYAHRICLLASSDAFRAMFDGG----YREKDARDIEIPNIRWEVFELMMRFDEFCAFNLSS 617 (618)
Q Consensus 552 v~~~~~~~~~~~h~~il~~~s~~f~~~~~~~----~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~~ 617 (618)
|.+.|+|..|...+..|....+ .||... +.....+++-+ |=+|..|+.+|+|+-+|++.+++
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~Fi-DRdp~~F~~ILnflR~g~l~~p~ 67 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFF-DRDPDIFRHILNFYRTGKLHYPR 67 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEE-CSCTTTHHHHHHHHHHSCBCCCT
T ss_pred EEEEECCEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEE-eCCcHHHHHHHHHHhcCCCCCCC
Confidence 6788999999999999986432 233221 11123345555 66899999999999999987653
No 166
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=86.06 E-value=22 Score=33.02 Aligned_cols=161 Identities=15% Similarity=0.119 Sum_probs=101.5
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHH
Q 007104 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (618)
Q Consensus 58 ~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (618)
....+..++.+.-+...+|.+....|+..|-.++.+-+.--.++... .+.|-.++..... ++.+++.|+
T Consensus 23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~----------~~~~rE~aa 91 (315)
T 3qml_C 23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENL----------PLTLRELST 91 (315)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTS----------CHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccC----------ChhHHHHHH
Confidence 33445555666422234455567789999999999866655565533 4555555533222 138999999
Q ss_pred HHHHHhc-CChhhHHHHHhC--CcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHH
Q 007104 138 FALGLLA-VKPEHQQLIVDN--GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (618)
Q Consensus 138 ~~L~~l~-~~~~~~~~~~~~--g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ 214 (618)
++++... ++|.....+... ..+..++.-|........ .....++..-+.+|.-|....... ...++..|.+
T Consensus 92 rII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~-~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ 165 (315)
T 3qml_C 92 RVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNH-RSSNILIKRYLSILNELPVTSEDL-----PIYSTVVLQN 165 (315)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHH
Confidence 9999988 899887766643 455555555544211110 011266677788888888754222 2456778888
Q ss_pred hhcCC--CHHHHHHHHHHHHHhh
Q 007104 215 LLEFT--DTKVQRAAAGALRTLA 235 (618)
Q Consensus 215 ll~~~--~~~v~~~a~~~L~~l~ 235 (618)
++... ++.++..++..+..+-
T Consensus 166 ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 166 VYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHccCCCCHHHHHHHHHHHHHHc
Confidence 77766 8889988888777665
No 167
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=82.80 E-value=15 Score=34.07 Aligned_cols=134 Identities=10% Similarity=0.030 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhh--cCCChhHHHHHHHHHHHHhcCChhhHHHHHh--cCChHHHH
Q 007104 264 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL--SSCCSESQREAALLLGQFAATDSDCKVHIVQ--RGAVRPLI 339 (618)
Q Consensus 264 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll--~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~--~~~~~~L~ 339 (618)
+....|+..|-.++.+ -..--.++... ...|-.++ ......+++.++++|+.....+|.....+.+ ..++..++
T Consensus 43 ~~le~aLD~L~ElSHD-i~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf 120 (315)
T 3qml_C 43 ARLEDSFDRIMEFAHD-YKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIM 120 (315)
T ss_dssp HHHHHHHHHHGGGTTS-HHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHHhhhh-HHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHH
Confidence 3455666666666543 22333333321 23333333 3445678899999999998888888776665 34555555
Q ss_pred HhhCC-------CCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCC--ChhHHHHHHHHHHHhhc
Q 007104 340 EMLQS-------PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK--NGSLQHNAAFALYGLAD 403 (618)
Q Consensus 340 ~lL~~-------~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~~ 403 (618)
.-|.. ....++..-+.+|.-|..+.. .+ ...++..|.+++... ++.++..++.++..+-.
T Consensus 121 ~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 121 AALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 44322 244667777888888887652 12 244667777777666 88999999998887763
No 168
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=78.92 E-value=38 Score=30.76 Aligned_cols=148 Identities=12% Similarity=0.068 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHhcc--ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHH
Q 007104 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEV 132 (618)
Q Consensus 55 ~~~~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v 132 (618)
....-.++++.|..+....+ +.+...+....+++- ++..- ..+++.++++-.+.+. ++
T Consensus 10 ~~~~~~~v~~lln~A~~~~~---~~kl~~L~qa~el~~~~dp~ll-----~~~l~~il~~~~~~~~------------~v 69 (257)
T 3gs3_A 10 TATARAKVVDWCNELVIASP---STKCELLAKVQETVLGSCAELA-----EEFLESVLSLAHDSNM------------EV 69 (257)
T ss_dssp HHHHHHHHHHHHHHHTTCCH---HHHHHHHHHHHHHHTTTTGGGH-----HHHHHHHHGGGGCSCH------------HH
T ss_pred cccHHHHHHHHHHHhhhcCc---HHHHHHHHHHHHHHHccCHhHH-----HHHHHHHHHhccCChH------------HH
Confidence 34455667777877644222 356777888888665 34433 3346777886555444 99
Q ss_pred HHHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhh-------cCch-----h
Q 007104 133 EKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH-------ENSS-----I 199 (618)
Q Consensus 133 ~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~-------~~~~-----~ 199 (618)
|...+..|...+ ..++.... .++.|..+|++.+. .+.+.++.+..++.. .++. .
T Consensus 70 rk~~~~Fi~e~~~~k~~l~~~-----~l~~L~~Ll~d~d~--------~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~ 136 (257)
T 3gs3_A 70 RKQVVAFVEQVCKVKVELLPH-----VINVVSMLLRDNSA--------QVIKRVIQACGSIYKNGLQYLCSLMEPGDSAE 136 (257)
T ss_dssp HHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHHHHHHhcCCCCcchHH
Confidence 999999999888 55554332 46777777875433 777877777666542 1221 1
Q ss_pred hHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 007104 200 KTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (618)
Q Consensus 200 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 235 (618)
..+-.-...-..++.+..+.+..++..+.+.+..+.
T Consensus 137 ~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 137 QAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 111111223356677788889999999998887754
No 169
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=72.19 E-value=44 Score=32.41 Aligned_cols=129 Identities=12% Similarity=0.119 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhhcC-CcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhc
Q 007104 223 VQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301 (618)
Q Consensus 223 v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~ 301 (618)
.+...+.-+..+..+ ++. +. .++++.++.+-.+.+.++|.+.+.+|...+....+.. ...++.|..++.
T Consensus 41 ~Kl~~L~q~~EL~l~~dps----Ll-~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~ 110 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPT----LL-DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLR 110 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGG----GG-GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccCHH----HH-HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHc
Confidence 344555555565432 222 22 3578889998889999999999999999876544432 225678888888
Q ss_pred CCChhHHHHHHHHHHHHh--------cCCh--hhHHHHHh--cCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 007104 302 SCCSESQREAALLLGQFA--------ATDS--DCKVHIVQ--RGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (618)
Q Consensus 302 ~~~~~~~~~a~~~L~~l~--------~~~~--~~~~~l~~--~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~ 361 (618)
+.++.+.+.+..+..++. .... ......++ ..+-..++.++.+.+..++..+...+-.+.
T Consensus 111 d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 111 DENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 888888888877776664 1111 01111111 123345666677788888888888877754
No 170
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=71.23 E-value=28 Score=29.09 Aligned_cols=71 Identities=4% Similarity=0.011 Sum_probs=54.6
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-cccHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhc
Q 007104 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVH 278 (618)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~ 278 (618)
++..|...|++.++.++..|+..|-.+.... ......+....++..|+.++.. .++.|+..++..+...+.
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 4567888888999999999999998888632 3345566666778888888874 678999999988877754
No 171
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=66.99 E-value=7.7 Score=31.56 Aligned_cols=74 Identities=9% Similarity=-0.000 Sum_probs=55.7
Q ss_pred hhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCc--cccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhhhc
Q 007104 448 RVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD--QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (618)
Q Consensus 448 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (618)
.++..|..-|.+.++.++..|+..|-.+..+-. ....+.....+..|+.++...++.|+......+...+....
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~ 117 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 117 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC
Confidence 456667777888999999999998888864332 33344556677788888877889999999999988777543
No 172
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=64.95 E-value=26 Score=28.74 Aligned_cols=72 Identities=11% Similarity=0.051 Sum_probs=57.3
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CcccHHHHHhcCCHHHHHHhhcC------CCHHHHHHHHHHHHHHhcC
Q 007104 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLVHS 279 (618)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~ll~~------~~~~v~~~a~~~L~~l~~~ 279 (618)
++..|..-+++.++.++..|+..|-.+... .......+....++..|++++.. .+..|+..++..+...+..
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 467888888999999999999999988863 23455667777888889998864 4789999999988887644
No 173
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=63.82 E-value=40 Score=29.91 Aligned_cols=99 Identities=10% Similarity=0.109 Sum_probs=65.6
Q ss_pred CCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-cccHHHHHhcC
Q 007104 171 DSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECN 249 (618)
Q Consensus 171 ~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~ 249 (618)
++....++|......+..+.. .....+ .++..|..-+++.++.++..|+..|-.+.... ......+....
T Consensus 18 ~~~~~~~dw~~ileicD~I~~---~~~~~k------~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~ 88 (226)
T 3zyq_A 18 SQLLLETDWESILQICDLIRQ---GDTQAK------YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQ 88 (226)
T ss_dssp CTTCSSCCHHHHHHHHHHHHT---TSSCHH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHH
T ss_pred CCCCCCcCHHHHHHHHHHHhC---CCccHH------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHH
Confidence 333344556666665555542 111122 24577888889999999999999998887632 23355566666
Q ss_pred CHHHHHHhhc-CCCHHHHHHHHHHHHHHhc
Q 007104 250 ALPTLILMLR-SEDSAIHYEAVGVIGNLVH 278 (618)
Q Consensus 250 ~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~ 278 (618)
++..|.++++ ..++.|+..++..+...+.
T Consensus 89 fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 89 TMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 7777777776 4567899998888887754
No 174
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=62.77 E-value=27 Score=29.43 Aligned_cols=72 Identities=10% Similarity=0.069 Sum_probs=56.8
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-cccHHHHHhcCCHHHHHHhhcC------CCHHHHHHHHHHHHHHhcC
Q 007104 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLVHS 279 (618)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~------~~~~v~~~a~~~L~~l~~~ 279 (618)
++..|...+++.++.++..|+..|-.+.... ......+....++..|++++.. .+..|+..++..+...+..
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4578888889999999999999999888632 3455567777888889998862 3679999999999887644
No 175
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=62.73 E-value=58 Score=36.32 Aligned_cols=218 Identities=12% Similarity=0.039 Sum_probs=114.2
Q ss_pred CHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhC----CCCHHHHHHHHHHHH--HhhcCCC
Q 007104 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ----SPDVQLREMSAFALG--RLAQDMH 365 (618)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~----~~~~~v~~~a~~~L~--~l~~~~~ 365 (618)
++.-|+.+..+...+++..|-.+|......-+.....+ +|.+++.|+ +.+.+-.+-|+.+|. .+...-
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~i-----ip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~- 207 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVV-----INKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKL- 207 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHH-----HHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHG-
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHH-
Confidence 35567777778889999999999999876555554433 566776664 333333444444433 111000
Q ss_pred cchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcC---CcchhHHHhhcccccccccchhhhhHHHHHHHHHHH-H
Q 007104 366 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN---EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKR-L 441 (618)
Q Consensus 366 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~-~ 441 (618)
.+.--.-...++.|+++.+...+.++..+-.+...+... +.... +.....+..+....-..............+ .
T Consensus 208 ~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~-~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r 286 (997)
T 1vsy_5 208 MTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVC-VISDQAFLPLAPPDGTINLQVEAVKLAKKKKR 286 (997)
T ss_dssp GGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCC-CCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHH
T ss_pred hcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHH-HHHHHHHhccCCCcHHHHHHHHHHHHHHHHHH
Confidence 001111123455667776767777776666555555422 11111 111111111110000000000101111101 1
Q ss_pred H--HHHhhhhHHHHHHHHhh-CC--HhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHh
Q 007104 442 E--EKIHGRVLNHLLYLMRV-AE--KGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL 516 (618)
Q Consensus 442 ~--~~~~~~~l~~L~~ll~~-~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L 516 (618)
. ...-.++...++...++ .. ......++..|.++....+ ......++..+++.+.+++|.+|..|..++..+
T Consensus 287 ~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d---~~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~i 363 (997)
T 1vsy_5 287 EYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLE---SKPDKRAVFSIISQISTKHPEIIHLVVKSLLST 363 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSS---CCCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC---CCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 0 11123455556676633 35 7788888888777654433 222445788899999999999999999988776
Q ss_pred hhh
Q 007104 517 ANK 519 (618)
Q Consensus 517 ~~~ 519 (618)
...
T Consensus 364 l~~ 366 (997)
T 1vsy_5 364 CNK 366 (997)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 176
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=62.16 E-value=2.2e+02 Score=32.60 Aligned_cols=69 Identities=10% Similarity=0.040 Sum_probs=45.0
Q ss_pred cCChHHHHH----hhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhc
Q 007104 332 RGAVRPLIE----MLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 403 (618)
Q Consensus 332 ~~~~~~L~~----lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 403 (618)
...++.++. ++.+.++.++.-+......+-...+ ...+..++..|+..+-+++..-...|+.+|..|+.
T Consensus 395 ~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd---~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~ 467 (1323)
T 3s4w_B 395 KDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFD---TYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIV 467 (1323)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSC---HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcc---chhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHh
Confidence 345555554 5677899999888887777654332 12233456667776666666556678889988874
No 177
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=59.92 E-value=1.3e+02 Score=29.14 Aligned_cols=86 Identities=12% Similarity=0.173 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhhh-cCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhc
Q 007104 181 VIRRAADAITNLAH-ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (618)
Q Consensus 181 ~~~~a~~~L~~L~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~ 259 (618)
.+...+.-+..|.. .++. .-..+++.++.+..+.+.++|+.++..|...+....+.. ..+++.|..+++
T Consensus 41 ~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~ 110 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLR 110 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHc
Confidence 34445555566544 2332 124678999999999999999999999998886333332 234677888888
Q ss_pred CCCHHHHHHHHHHHHHH
Q 007104 260 SEDSAIHYEAVGVIGNL 276 (618)
Q Consensus 260 ~~~~~v~~~a~~~L~~l 276 (618)
+.++.|...++.+..++
T Consensus 111 d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 111 DENVNVVKKAILTMTQL 127 (386)
T ss_dssp CSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 88999999888888776
No 178
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=56.00 E-value=18 Score=30.29 Aligned_cols=73 Identities=7% Similarity=-0.042 Sum_probs=54.6
Q ss_pred hhHHHHHHHHhhCCHhHHHHHHHHHHhhcCC--CccccceecCCchHHHHHHhcC-CChhhhhhHHHHHHHhhhhh
Q 007104 448 RVLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAVALFKLANKA 520 (618)
Q Consensus 448 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~ 520 (618)
.++..|..-|.+.++.++..|+..|-.+..+ ......+.....+..|+.++.. .++.|+..+...+..-+...
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f 127 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF 127 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence 3556677778889999999999998888643 3333344556678888888865 67899999999888777653
No 179
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=54.60 E-value=17 Score=29.50 Aligned_cols=71 Identities=7% Similarity=0.030 Sum_probs=53.5
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-cccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 007104 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (618)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 278 (618)
++..|...+.+.++.++..|+..|-.+.... ......+....++..++.++...++.|+..++..+...+.
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 4577888888899999999998888887632 2334455556677778888877788999999988887753
No 180
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=50.61 E-value=1e+02 Score=25.15 Aligned_cols=72 Identities=10% Similarity=0.046 Sum_probs=56.2
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-cccHHHHHhcCCHHHHHHhhcC------CCHHHHHHHHHHHHHHhcC
Q 007104 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLVHS 279 (618)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~------~~~~v~~~a~~~L~~l~~~ 279 (618)
++..|..-+.+.++.++..|+..|-.+.... ......+....++..|++++.. .++.|+..++..+...+..
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 4678888888999999999999988887632 3345566677788889998863 5788999999998887643
No 181
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=49.35 E-value=28 Score=31.59 Aligned_cols=62 Identities=10% Similarity=0.152 Sum_probs=41.5
Q ss_pred hCCCCHHHHHHHHHHHHHhhcCCC-cchhhHhcCCHHHHHHhhc----C----CChhHHHHHHHHHHHhhc
Q 007104 342 LQSPDVQLREMSAFALGRLAQDMH-NQAGIAHNGGLVPLLKLLD----S----KNGSLQHNAAFALYGLAD 403 (618)
Q Consensus 342 L~~~~~~v~~~a~~~L~~l~~~~~-~~~~l~~~~~l~~L~~ll~----~----~~~~v~~~a~~~L~~l~~ 403 (618)
+.+..+..+..++++++|+-.+.. .+..+........++..+. + .+..++..++..+.|++.
T Consensus 99 ~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av 169 (253)
T 3gae_A 99 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSA 169 (253)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHH
Confidence 335577889999999999998877 4444433322333444331 1 256788899999999974
No 182
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=46.03 E-value=39 Score=27.63 Aligned_cols=72 Identities=11% Similarity=-0.051 Sum_probs=55.7
Q ss_pred CHHHHHHhhcCCChhHHHHHHHHHHHHhcCC-hhhHHHHHhcCChHHHHHhhCC------CCHHHHHHHHHHHHHhhcC
Q 007104 292 ALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQS------PDVQLREMSAFALGRLAQD 363 (618)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~l~~~~~~~~L~~lL~~------~~~~v~~~a~~~L~~l~~~ 363 (618)
++..+..-+.+.++.++..|+..|-.+...+ ......+....++..|+.++.. .++.|+..++..+...+..
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4566777788889999999988888877543 4455666677888889988864 4789999999998888753
No 183
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=45.87 E-value=38 Score=27.73 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=56.5
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCc--chhhHhcCCHHHHHHhhcC------CChhHHHHHHHHHHHhhcC
Q 007104 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN--QAGIAHNGGLVPLLKLLDS------KNGSLQHNAAFALYGLADN 404 (618)
Q Consensus 334 ~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~--~~~l~~~~~l~~L~~ll~~------~~~~v~~~a~~~L~~l~~~ 404 (618)
.+..|..-+.+.++.++..|+..|-.+..+... +..+....++..|++++.. .+..|+..++..+...+..
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 467788888899999999999998888875433 4556666778888888863 5789999999999988743
No 184
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=44.43 E-value=1.3e+02 Score=24.69 Aligned_cols=104 Identities=10% Similarity=0.090 Sum_probs=65.6
Q ss_pred HhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhhcCC-cccHH
Q 007104 166 LKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKN-DENKN 243 (618)
Q Consensus 166 L~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~-~~~~~ 243 (618)
+....++....++|......+..+.. .....+ .++..|...++ +.++.++..|+..|-.+.... +....
T Consensus 21 IekATs~~l~~~Dw~~~leicD~I~~---~~~~~k------~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~ 91 (157)
T 1elk_A 21 IEKATDGSLQSEDWALNMEICDIINE---TEEGPK------DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHV 91 (157)
T ss_dssp HHHHTCTTCSSCCHHHHHHHHHHHHH---SSSHHH------HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHcCCCCCCcCHHHHHHHHHHHhC---CCccHH------HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 33333333344455665555554432 112222 24567888887 478999999999998888632 44455
Q ss_pred HHHhcCCHHH-HHHhhc---CCCHHHHHHHHHHHHHHhc
Q 007104 244 QIVECNALPT-LILMLR---SEDSAIHYEAVGVIGNLVH 278 (618)
Q Consensus 244 ~~~~~~~~~~-L~~ll~---~~~~~v~~~a~~~L~~l~~ 278 (618)
.+....++.. |++++. .++..|+..++..+...+.
T Consensus 92 eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 92 LVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 5666677887 788874 2346889988888877743
No 185
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=43.43 E-value=1.1e+02 Score=26.84 Aligned_cols=70 Identities=3% Similarity=0.061 Sum_probs=51.8
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-cccHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHh
Q 007104 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLV 277 (618)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~ 277 (618)
++..|..-|.+.++.++..|+..|-.+...- ......+....++..|+.++. ..+..|+..++..+...+
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 4567788888999999999999999888632 233455666667777887776 456788888887777664
No 186
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=42.70 E-value=3e+02 Score=30.62 Aligned_cols=102 Identities=15% Similarity=0.024 Sum_probs=61.0
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcC----CChhHHHHHHHHHH-----HHhc
Q 007104 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS----CCSESQREAALLLG-----QFAA 320 (618)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~----~~~~~~~~a~~~L~-----~l~~ 320 (618)
++.-|+++..+.-++||..|-.+|......-+..... +++.+++.|.. .+.+-.+.|+.+|. ....
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~ 208 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLM 208 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGG
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHh
Confidence 4566777777889999999999999987665554433 35666666643 34555555655444 1111
Q ss_pred CChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 007104 321 TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (618)
Q Consensus 321 ~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~ 361 (618)
.+-... ..+++.|++......+.++..+-.+...+.
T Consensus 209 ~d~~~~-----~~~~~ali~~~~~dKpsI~~l~~~l~~~i~ 244 (997)
T 1vsy_5 209 TDYKDI-----GRLIFLLIECCRVNELEIGMYADKILTDIV 244 (997)
T ss_dssp GCHHHH-----HHHHHHHHHTCSCSSSSTTTHHHHHHHHHH
T ss_pred cChHHH-----HHHHHHHHHhCcCCCHHHHHHHHHHHHHHH
Confidence 221211 234566666666666666665555544444
No 187
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=39.54 E-value=43 Score=28.20 Aligned_cols=70 Identities=17% Similarity=0.165 Sum_probs=52.6
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-hHHHHHHhcCCHHHHHHhhcC------CChhHHHHHHHHHHHHh
Q 007104 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-NIKKEVLAAGALQPVIGLLSS------CCSESQREAALLLGQFA 319 (618)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~------~~~~~~~~a~~~L~~l~ 319 (618)
++..|.+-+++.++.++..|+..|-.+..+.. .....+....++..|+.++.. .+..++..++..+..-+
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 36678888899999999999999988877643 344566667788889988863 24677777777766654
No 188
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=39.09 E-value=1.6e+02 Score=28.78 Aligned_cols=131 Identities=11% Similarity=0.100 Sum_probs=75.4
Q ss_pred HHHHHHHHhhhcCchhhHHHHhcCChHHHH-HhhcCCCHHHHHHHHHHHHHhhcCCcc-cHHHHHhcCCHHHHHHhhc--
Q 007104 184 RAADAITNLAHENSSIKTRVRMEGGIPPLV-ELLEFTDTKVQRAAAGALRTLAFKNDE-NKNQIVECNALPTLILMLR-- 259 (618)
Q Consensus 184 ~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~-~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~L~~ll~-- 259 (618)
.++.+|.-+..+.+.. +.+..++ ..+.+..+..+..++++++|+-. ++. ....+........++..+.
T Consensus 245 PaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~-~~~~g~~ll~~~~~~~~i~~~i~~~ 316 (425)
T 3pst_A 245 PAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFN-NENWGVKLLESNQVYKSIFETIDTE 316 (425)
T ss_dssp HHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTT-CTTTHHHHHTSHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcC-CcchHHHHhhCchhHHHHHHHHHHH
Confidence 3666666655533322 1222222 23335568899999999999986 454 3444433223445555442
Q ss_pred ------CCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhc---------CCChhHHHHHHHHHHHHhcCChh
Q 007104 260 ------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS---------SCCSESQREAALLLGQFAATDSD 324 (618)
Q Consensus 260 ------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~---------~~~~~~~~~a~~~L~~l~~~~~~ 324 (618)
..+..++..+...+.|++......+. ....+..+..++. ..+.+....++.+|+++....+.
T Consensus 317 l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~ 393 (425)
T 3pst_A 317 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 393 (425)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHH
T ss_pred hhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 12456888888889998653211000 1123445555555 24778888999999999854443
Q ss_pred h
Q 007104 325 C 325 (618)
Q Consensus 325 ~ 325 (618)
.
T Consensus 394 ~ 394 (425)
T 3pst_A 394 L 394 (425)
T ss_dssp H
T ss_pred H
Confidence 3
No 189
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=34.38 E-value=27 Score=35.59 Aligned_cols=66 Identities=11% Similarity=0.105 Sum_probs=45.4
Q ss_pred cEEEEECCeEEehhHHHHhcCCHH-HHHhhcC-CCCCCCCCceecCCCCHHHHHHHHHHHhC-CccccCC
Q 007104 551 DVTFLVEGRRFYAHRICLLASSDA-FRAMFDG-GYREKDARDIEIPNIRWEVFELMMRFDEF-CAFNLSS 617 (618)
Q Consensus 551 Dv~~~~~~~~~~~h~~il~~~s~~-f~~~~~~-~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt-~~~~~~~ 617 (618)
-|.+.|+|..|...+..|...-+- +-.++.. .+.....+++-+ |=+|..|+.+|+|+.| |++.+++
T Consensus 53 ~v~lNVgG~~f~t~~~tL~~~p~s~l~~~~~~~~~~~~~~~~~f~-DR~~~~F~~IL~~~r~~g~l~~p~ 121 (514)
T 2r9r_B 53 RVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPV 121 (514)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTTSTTTCHHHHGGGEETTTTEEEE-CSCHHHHHHHHHHHHHTSCCCCCT
T ss_pred EEEEEeCCEEEEecHHHHhcCCCCcccccccCCcccCCCCCCEEE-cCChHHHHHHHHHHhcCCccccCC
Confidence 477889999999999998754321 1122211 111233456666 7899999999999999 9987653
No 190
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=31.47 E-value=35 Score=30.90 Aligned_cols=106 Identities=8% Similarity=0.001 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHhcCChh-hHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCC
Q 007104 130 HEVEKGSAFALGLLAVKPE-HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (618)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~-~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~ 208 (618)
|..+..+++++.|+..++. .+..+........++..+.+.-.+........++..++..+.|++......+. +...
T Consensus 104 ~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~ 180 (253)
T 3gae_A 104 ITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLEL 180 (253)
T ss_dssp HHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTH
T ss_pred hhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHH
Confidence 3789999999999997777 45555443233444444322111100001127778888899998863211110 0112
Q ss_pred hHHHHHhhc---------CCCHHHHHHHHHHHHHhhcCC
Q 007104 209 IPPLVELLE---------FTDTKVQRAAAGALRTLAFKN 238 (618)
Q Consensus 209 i~~L~~ll~---------~~~~~v~~~a~~~L~~l~~~~ 238 (618)
...+++.+. ..+++....++.+|.++....
T Consensus 181 ~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 181 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp HHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 233444443 137788888899999998643
No 191
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=29.84 E-value=66 Score=30.82 Aligned_cols=100 Identities=11% Similarity=0.103 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhc--------CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCH
Q 007104 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--------FTDTKVQRAAAGALRTLAFKNDENKNQIVECNAL 251 (618)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~--------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 251 (618)
..+-.+++++.|+.......+..+........+++.+. ..+..++..++..+.|++......+ .+...+
T Consensus 214 ~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~---~~~el~ 290 (362)
T 3l3f_X 214 TLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---SDLELL 290 (362)
T ss_dssp HHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC---SCTTHH
T ss_pred hHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---chHHHH
Confidence 78888999999999844323333321111223333331 1245788888888999885211100 012234
Q ss_pred HHHHHhhc---------CCCHHHHHHHHHHHHHHhcCChh
Q 007104 252 PTLILMLR---------SEDSAIHYEAVGVIGNLVHSSPN 282 (618)
Q Consensus 252 ~~L~~ll~---------~~~~~v~~~a~~~L~~l~~~~~~ 282 (618)
..+..++. ..+++....++-+|++|....+.
T Consensus 291 ~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~ 330 (362)
T 3l3f_X 291 PIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 330 (362)
T ss_dssp HHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 45555555 25888999999999999865443
No 192
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=28.95 E-value=7.1e+02 Score=28.58 Aligned_cols=71 Identities=11% Similarity=0.016 Sum_probs=38.1
Q ss_pred CChHHHHHhh-CCCCHHHHHHHHHHHHHhhcCCCcchhhH----------hcCCHHHHH----HhhcCCChhHHHHHHHH
Q 007104 333 GAVRPLIEML-QSPDVQLREMSAFALGRLAQDMHNQAGIA----------HNGGLVPLL----KLLDSKNGSLQHNAAFA 397 (618)
Q Consensus 333 ~~~~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~l~----------~~~~l~~L~----~ll~~~~~~v~~~a~~~ 397 (618)
..++.++=++ -+.+...+..+-.++.+-.....-...++ -....+.++ .++++.++.++..+...
T Consensus 344 k~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~l 423 (1323)
T 3s4w_B 344 KSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLL 423 (1323)
T ss_dssp CTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred chhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4555544432 23345566677777777665433322211 122233333 34577888888887777
Q ss_pred HHHhhc
Q 007104 398 LYGLAD 403 (618)
Q Consensus 398 L~~l~~ 403 (618)
-..+..
T Consensus 424 Y~~lF~ 429 (1323)
T 3s4w_B 424 YKYAFK 429 (1323)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666643
No 193
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=26.78 E-value=4.7e+02 Score=25.80 Aligned_cols=244 Identities=8% Similarity=-0.010 Sum_probs=0.0
Q ss_pred ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCC
Q 007104 93 NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDS 172 (618)
Q Consensus 93 ~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~ 172 (618)
++......++...+..|+.++.+.+. .-|.....+|+.+-..--....++....-..+.+.+-.....
T Consensus 151 ~~~~~k~~id~~Fi~~Ll~lfdSeDp------------RERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~ 218 (449)
T 2npp_B 151 QPNIAKKYIDQKFVLQLLELFDSEDP------------RERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHH 218 (449)
T ss_dssp CSTTGGGTSCHHHHHHHHHTTTSSTH------------HHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCC
T ss_pred ChhhhhhhCCHHHHHHHHHHcCCCCh------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q ss_pred CCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCC-HHHHHHHHHHHHHhhcCCcccHHHHHhcCCH
Q 007104 173 NCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNAL 251 (618)
Q Consensus 173 ~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 251 (618)
.-....+.+++.+..+-...-+.-...=....|+.+.+... ..-...-..++..+...++.....++..
T Consensus 219 -------nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~--- 288 (449)
T 2npp_B 219 -------NGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMA--- 288 (449)
T ss_dssp -------SCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHHHH---
T ss_pred -------CCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHHHH---
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHH-----HHHHHhcCChhhH
Q 007104 252 PTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL-----LLGQFAATDSDCK 326 (618)
Q Consensus 252 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~-----~L~~l~~~~~~~~ 326 (618)
|++.---.+..=...-+.-|..+...-+...-.-+...+...+..++.+.+..+.+.|+. -+.++...+....
T Consensus 289 --LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~n~~~I 366 (449)
T 2npp_B 289 --LLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKI 366 (449)
T ss_dssp --HHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHH
T ss_pred --HHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHhchhhh
Q ss_pred HHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCC
Q 007104 327 VHIVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDM 364 (618)
Q Consensus 327 ~~l~~~~~~~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~ 364 (618)
..++ ++.|....+.. +..++..+..++.-+..-+
T Consensus 367 lPii----~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d 401 (449)
T 2npp_B 367 LPIM----FPSLYRNSKTHWNKTIHGLIYNALKLFMEMN 401 (449)
T ss_dssp HHHH----HHHHTSCTTCCSSTTHHHHHHHHHHHHHTTC
T ss_pred HHhh----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHC
No 194
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=25.59 E-value=78 Score=28.03 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=50.3
Q ss_pred HHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc--CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHH
Q 007104 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (618)
Q Consensus 106 v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~ 183 (618)
+..|..-|++.++ .++..|+..|-.+. -.+.+...+.....+..|..+++.... ..++.
T Consensus 47 ~ral~krl~~~n~------------~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~-------~~Vk~ 107 (226)
T 3zyq_A 47 VNSIKKKVNDKNP------------HVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVE-------VNVRN 107 (226)
T ss_dssp HHHHHHHHTCSSH------------HHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCC-------HHHHH
T ss_pred HHHHHHHHcCCCH------------HHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCC-------HHHHH
Confidence 4555666776665 88899999988888 445566777777778888888865332 27888
Q ss_pred HHHHHHHHhhh
Q 007104 184 RAADAITNLAH 194 (618)
Q Consensus 184 ~a~~~L~~L~~ 194 (618)
.++..+...+.
T Consensus 108 kil~li~~W~~ 118 (226)
T 3zyq_A 108 KILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888877664
No 195
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=25.21 E-value=74 Score=31.19 Aligned_cols=104 Identities=7% Similarity=-0.008 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHhCC-cHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCC
Q 007104 130 HEVEKGSAFALGLLAVKPEHQQLIVDNG-ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (618)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~~~~g-~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~ 208 (618)
+..+..+++++.|+..++.....++... ....++..+...-..........++..++..+.|++......+. ....
T Consensus 276 ~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el 352 (425)
T 3pst_A 276 ITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLEL 352 (425)
T ss_dssp HHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTH
T ss_pred hhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHH
Confidence 4789999999999998877544444332 24455555432211111011126788888889998863211110 0112
Q ss_pred hHHHHHhhc---------CCCHHHHHHHHHHHHHhhc
Q 007104 209 IPPLVELLE---------FTDTKVQRAAAGALRTLAF 236 (618)
Q Consensus 209 i~~L~~ll~---------~~~~~v~~~a~~~L~~l~~ 236 (618)
+..+.+.+. ..+++....++.+|.+|..
T Consensus 353 ~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 353 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp HHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 334555554 2478888889999999985
No 196
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=25.16 E-value=2.7e+02 Score=22.48 Aligned_cols=78 Identities=14% Similarity=0.214 Sum_probs=58.8
Q ss_pred CchhhHHHHhcCChHHHHHhhcC------CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcC--CCHHHHH
Q 007104 196 NSSIKTRVRMEGGIPPLVELLEF------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHY 267 (618)
Q Consensus 196 ~~~~~~~~~~~~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~ 267 (618)
....+..+.+.|++..+-..|.- ++..+|...+.+|.++- -.++.+.++|+-..++.+-++ +.++.+.
T Consensus 50 k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvv~~l~k~~~et~~nk~ 125 (145)
T 2xpp_A 50 SKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK----IHKEHLVTSGVGKIVYFYSINPKESKEVRA 125 (145)
T ss_dssp CTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHCHHHHHHHHHHCTTSCHHHHH
T ss_pred hHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC----CCHHHhhcCCCCcchhhhhcCCccCHHHHH
Confidence 44556778889999999888863 45789999999988874 446778888877777776664 4567888
Q ss_pred HHHHHHHHHh
Q 007104 268 EAVGVIGNLV 277 (618)
Q Consensus 268 ~a~~~L~~l~ 277 (618)
.|-..+...+
T Consensus 126 la~~Li~~Ws 135 (145)
T 2xpp_A 126 SAKALVQKWT 135 (145)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887777664
No 197
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=24.42 E-value=4.9e+02 Score=25.21 Aligned_cols=272 Identities=13% Similarity=0.062 Sum_probs=0.0
Q ss_pred hccCCCCcccchHHHHHHHHHHHHhhhc---CchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHH
Q 007104 168 RHMDSNCSRAVNSVIRRAADAITNLAHE---NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQ 244 (618)
Q Consensus 168 ~~~~~~~~~~~~~~~~~a~~~L~~L~~~---~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 244 (618)
..++.+...+.|.=...+-..+..+... ++...+...+...+..|+.++.++|+.-|...-.+|..+-. .--....
T Consensus 87 ~eedep~~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~-kf~~~R~ 165 (403)
T 3fga_B 87 PEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYG-KFLGLRA 165 (403)
T ss_dssp GGGCCCCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH-HCHHHHH
T ss_pred ccccccccccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH-hhhhhHH
Q ss_pred HHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhH-HHHHHHHHHHHhcCC
Q 007104 245 IVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES-QREAALLLGQFAATD 322 (618)
Q Consensus 245 ~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~-~~~a~~~L~~l~~~~ 322 (618)
++...+-..+..... .....-....+.+++.+..+-..--+.--..=....|+.+........ ......++..+...+
T Consensus 166 ~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKD 245 (403)
T 3fga_B 166 YIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD 245 (403)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhC
Q ss_pred hhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc-CCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHh
Q 007104 323 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 401 (618)
Q Consensus 323 ~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 401 (618)
+.....+ +..++..-...++.-...-+.-+..+.. -++..-.-+.......+..++.+.+..|.+.|+...
T Consensus 246 p~L~~~v-----i~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~w--- 317 (403)
T 3fga_B 246 STLTEPV-----VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW--- 317 (403)
T ss_dssp GGGHHHH-----HHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGG---
T ss_pred chhHHHH-----HHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHh---
Q ss_pred hcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhC-----CHhHHHHHHHHHHhhc
Q 007104 402 ADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-----EKGVQRRVALALAHLC 476 (618)
Q Consensus 402 ~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~-----~~~v~~~a~~~L~~l~ 476 (618)
+.+....++... ...++|.+.+-+... +..++..+..++..+.
T Consensus 318 --nNe~i~~li~~n------------------------------~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~ 365 (403)
T 3fga_B 318 --NNEYIMSLISDN------------------------------AAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFM 365 (403)
T ss_dssp --GCHHHHHHHHTT------------------------------HHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHH
T ss_pred --ccHHHHHHHHHh------------------------------HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q ss_pred CCCc
Q 007104 477 SPDD 480 (618)
Q Consensus 477 ~~~~ 480 (618)
..+.
T Consensus 366 e~d~ 369 (403)
T 3fga_B 366 EMNQ 369 (403)
T ss_dssp TTSC
T ss_pred HhCH
No 198
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=23.59 E-value=3.6e+02 Score=23.38 Aligned_cols=127 Identities=9% Similarity=-0.055 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhc-C-ChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCC
Q 007104 131 EVEKGSAFALGLLA-V-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (618)
Q Consensus 131 ~v~~~a~~~L~~l~-~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~ 208 (618)
+.+..|+..+.... . .++. ++.+-.++...+. |++....+.++..+....+.. .
T Consensus 70 E~r~la~~~l~~~~~~~~~~~---------l~~~~~~l~~~~n-------Wd~~D~~a~~~~~~~~~~~~~--------~ 125 (220)
T 2b6c_A 70 EYQYVAIDLALQNVQRFSLEE---------VVAFKAYVPQKAW-------WDSVDAWRKFFGSWVALHLTE--------L 125 (220)
T ss_dssp HHHHHHHHHHHHTGGGCCHHH---------HHHGGGGTTTTCS-------HHHHHHHHHHHHHHHHHSGGG--------H
T ss_pred HHHHHHHHHHHHHHhhCCHHH---------HHHHHHHhccCCc-------HHHHHHHHHHHHHHHHHChHH--------H
Confidence 77888888887654 2 2211 2222233333222 466665556666666544321 2
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHH
Q 007104 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (618)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (618)
.+.+...+.+++.-+++.|+..+. .......... .++.+-.++.+++.-|+....|+|..++..+++.....+
T Consensus 126 ~~~i~~W~~s~~~w~rR~ai~~~l--~~~~~~~~~~-----~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 126 PTIFALFYGAENFWNRRVALNLQL--MLKEKTNQDL-----LKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM 198 (220)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHTTT--TCGGGCCHHH-----HHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH--HHHHCCCHHH-----HHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 356778889999989988877553 2211112111 134444577788999999999999999988887544444
No 199
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=23.22 E-value=3e+02 Score=22.24 Aligned_cols=76 Identities=13% Similarity=0.124 Sum_probs=53.7
Q ss_pred CcccHHHHHhcCCHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCC--ChhHHH
Q 007104 238 NDENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQR 309 (618)
Q Consensus 238 ~~~~~~~~~~~~~~~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~ 309 (618)
....+..+++.|++..+-..|.. ++..++...+.+|.++ +-.+..+...|+-..++.+-.++ .++.++
T Consensus 50 k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~l----PI~~e~Lk~SglGkvv~~l~k~~~et~~nk~ 125 (145)
T 2xpp_A 50 SKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTM----KIHKEHLVTSGVGKIVYFYSINPKESKEVRA 125 (145)
T ss_dssp CTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----CCCHHHHHHHCHHHHHHHHHHCTTSCHHHHH
T ss_pred hHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHC----CCCHHHhhcCCCCcchhhhhcCCccCHHHHH
Confidence 46667888999999999999983 4678999999999998 33356677776666665555554 344555
Q ss_pred HHHHHHHH
Q 007104 310 EAALLLGQ 317 (618)
Q Consensus 310 ~a~~~L~~ 317 (618)
.|-..+..
T Consensus 126 la~~Li~~ 133 (145)
T 2xpp_A 126 SAKALVQK 133 (145)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555444
No 200
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=22.83 E-value=57 Score=28.09 Aligned_cols=117 Identities=15% Similarity=0.039 Sum_probs=63.1
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHH
Q 007104 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (618)
Q Consensus 58 ~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (618)
.+|.++.++....+..-.|.......++....+..|+...-..--.-.+|.++..+=...... ..+|+.|+
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~---------~~LRd~AA 111 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVD---------DDVRKMSA 111 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCC---------HHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCH---------HHHHHHHH
Confidence 345555555544322222445555566666667665432111111234777777664443311 17999999
Q ss_pred HHHHHhcCC-----hhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhh
Q 007104 138 FALGLLAVK-----PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194 (618)
Q Consensus 138 ~~L~~l~~~-----~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 194 (618)
..|+.++.. +..+. .++..+.+.+.++..+ .....-|+..|..+-.
T Consensus 112 ~lL~~I~~~~~~~y~~L~~-----RI~~tl~k~l~dp~~~------l~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 112 DIVKYIYDTYSRSYKTLAP-----RVLKTLKGVWMDPNRS------EDSQYGALYCLSILSK 162 (196)
T ss_dssp HHHHHHHHHHTTTSTTHHH-----HHHHHHHHHHTCTTSC------HHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhCccCchHHH-----HHHHHHHHHHcCCCCC------hHHHHHHHHHHHHhHH
Confidence 999999921 22222 2345666666555432 2566667777666554
No 201
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=22.36 E-value=3.7e+02 Score=23.01 Aligned_cols=71 Identities=14% Similarity=0.060 Sum_probs=48.5
Q ss_pred ChHHHHHhhCC------CCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCC---ChhHHHHHHHHHHHhhcC
Q 007104 334 AVRPLIEMLQS------PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK---NGSLQHNAAFALYGLADN 404 (618)
Q Consensus 334 ~~~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~---~~~v~~~a~~~L~~l~~~ 404 (618)
.+|.++.++.+ .+.........+...|..++.-.-...-...+++++.++-.+ ...+|..|+..|..++..
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~ 120 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDT 120 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 56666655432 466777777888888888776554444455678877776332 237999999999999843
No 202
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=21.82 E-value=69 Score=30.70 Aligned_cols=104 Identities=7% Similarity=0.001 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHhCC-cHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCC
Q 007104 130 HEVEKGSAFALGLLAVKPEHQQLIVDNG-ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (618)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~~~~g-~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~ 208 (618)
|..+..+++++.|+..++.....++... ....++..+...-..........++..++..+.|++......+.. ...
T Consensus 213 ~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~---~el 289 (362)
T 3l3f_X 213 ITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD---LEL 289 (362)
T ss_dssp HHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC---TTH
T ss_pred hhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch---HHH
Confidence 4789999999999998777544444322 233344444222111000011267788888889988632111100 112
Q ss_pred hHHHHHhhc---------CCCHHHHHHHHHHHHHhhc
Q 007104 209 IPPLVELLE---------FTDTKVQRAAAGALRTLAF 236 (618)
Q Consensus 209 i~~L~~ll~---------~~~~~v~~~a~~~L~~l~~ 236 (618)
+..+.+.+. ..+++....++.+|.+|..
T Consensus 290 ~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 290 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp HHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 344555554 2578888899999999985
No 203
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=20.54 E-value=4.7e+02 Score=23.49 Aligned_cols=92 Identities=14% Similarity=0.141 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh--------hcCCccc---HHHHHh-
Q 007104 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL--------AFKNDEN---KNQIVE- 247 (618)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l--------~~~~~~~---~~~~~~- 247 (618)
+++++.+..|...+...+.... ..++.|..++++.++.+.+.+..+..++ +. ++.. .+..-+
T Consensus 68 ~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~-~~~~~~~~~~~W~~ 141 (257)
T 3gs3_A 68 EVRKQVVAFVEQVCKVKVELLP-----HVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCS-LMEPGDSAEQAWNI 141 (257)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTT-SSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc-CCCCcchHHHHHHH
Confidence 9999999999999976654332 3567888889988888888877665554 32 2111 111111
Q ss_pred -cCCHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 007104 248 -CNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (618)
Q Consensus 248 -~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 277 (618)
..+=..++.++.+.+..++..|+.++-.+.
T Consensus 142 m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 142 LSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 122345667777889999999999988764
Done!