Query 007106
Match_columns 618
No_of_seqs 491 out of 3152
Neff 9.6
Searched_HMMs 46136
Date Thu Mar 28 19:00:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007106.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007106hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 5.3E-68 1.2E-72 540.3 36.8 377 99-475 91-473 (519)
2 KOG0330 ATP-dependent RNA heli 100.0 6.2E-63 1.3E-67 470.8 32.7 367 95-470 57-427 (476)
3 PRK10590 ATP-dependent RNA hel 100.0 6.5E-60 1.4E-64 501.8 49.8 365 100-467 2-369 (456)
4 PTZ00110 helicase; Provisional 100.0 5.5E-60 1.2E-64 509.2 44.7 381 93-475 124-509 (545)
5 KOG0336 ATP-dependent RNA heli 100.0 1.1E-60 2.4E-65 456.9 26.0 428 52-480 166-602 (629)
6 COG0513 SrmB Superfamily II DN 100.0 4E-59 8.6E-64 497.6 40.3 364 99-467 29-398 (513)
7 PRK04537 ATP-dependent RNA hel 100.0 1E-56 2.2E-61 485.3 56.3 367 99-468 9-382 (572)
8 KOG0328 Predicted ATP-dependen 100.0 1.2E-58 2.5E-63 423.1 27.6 366 97-471 25-394 (400)
9 KOG0339 ATP-dependent RNA heli 100.0 2.1E-57 4.6E-62 445.1 35.2 380 93-474 217-599 (731)
10 KOG0333 U5 snRNP-like RNA heli 100.0 9.3E-58 2E-62 450.0 32.6 368 93-463 239-637 (673)
11 KOG0342 ATP-dependent RNA heli 100.0 1.3E-57 2.9E-62 447.3 32.7 360 98-459 81-446 (543)
12 PRK04837 ATP-dependent RNA hel 100.0 1.8E-56 4E-61 472.6 43.8 369 97-468 6-380 (423)
13 PLN00206 DEAD-box ATP-dependen 100.0 3.9E-56 8.5E-61 478.3 45.6 380 92-474 114-499 (518)
14 PRK11634 ATP-dependent RNA hel 100.0 2.1E-56 4.5E-61 485.1 43.0 361 99-468 6-370 (629)
15 PRK11776 ATP-dependent RNA hel 100.0 2.5E-56 5.5E-61 476.6 42.6 360 99-468 4-367 (460)
16 KOG0326 ATP-dependent RNA heli 100.0 2.9E-58 6.4E-63 427.2 22.4 389 75-473 59-452 (459)
17 KOG0345 ATP-dependent RNA heli 100.0 7.1E-56 1.5E-60 432.0 33.4 357 100-458 5-372 (567)
18 KOG0340 ATP-dependent RNA heli 100.0 3.6E-56 7.7E-61 419.6 29.4 371 97-473 5-384 (442)
19 PRK11192 ATP-dependent RNA hel 100.0 5E-54 1.1E-58 456.3 43.3 363 100-467 2-369 (434)
20 KOG0343 RNA Helicase [RNA proc 100.0 2E-55 4.3E-60 435.6 29.9 367 90-460 60-433 (758)
21 KOG0338 ATP-dependent RNA heli 100.0 1.2E-55 2.6E-60 433.4 27.5 360 98-461 180-544 (691)
22 KOG0335 ATP-dependent RNA heli 100.0 1.5E-55 3.3E-60 441.1 27.9 374 100-475 75-469 (482)
23 PRK01297 ATP-dependent RNA hel 100.0 5.6E-53 1.2E-57 451.9 47.2 367 97-466 85-458 (475)
24 KOG0341 DEAD-box protein abstr 100.0 5.1E-56 1.1E-60 422.1 16.6 381 92-477 163-556 (610)
25 KOG0346 RNA helicase [RNA proc 100.0 5.7E-53 1.2E-57 408.0 30.7 364 99-463 19-423 (569)
26 KOG0348 ATP-dependent RNA heli 100.0 2.5E-53 5.4E-58 419.4 28.9 365 97-461 134-565 (708)
27 PTZ00424 helicase 45; Provisio 100.0 2.3E-51 5E-56 432.9 40.7 363 99-470 28-394 (401)
28 KOG0334 RNA helicase [RNA proc 100.0 6.8E-52 1.5E-56 442.5 29.0 390 91-483 357-753 (997)
29 KOG0347 RNA helicase [RNA proc 100.0 1.2E-50 2.7E-55 401.6 20.3 365 97-465 179-585 (731)
30 TIGR03817 DECH_helic helicase/ 100.0 3.1E-48 6.8E-53 429.4 40.9 348 105-468 20-406 (742)
31 COG1200 RecG RecG-like helicas 100.0 1E-48 2.2E-53 404.7 29.9 377 42-451 191-592 (677)
32 KOG0327 Translation initiation 100.0 9.5E-49 2.1E-53 375.4 25.3 362 100-472 27-392 (397)
33 PRK10917 ATP-dependent DNA hel 100.0 4.2E-48 9.1E-53 427.1 34.1 377 39-448 187-587 (681)
34 PLN03137 ATP-dependent DNA hel 100.0 7E-47 1.5E-51 414.5 38.7 340 103-460 441-797 (1195)
35 TIGR00643 recG ATP-dependent D 100.0 1E-47 2.3E-52 421.5 32.2 379 38-448 159-564 (630)
36 KOG0332 ATP-dependent RNA heli 100.0 6.4E-48 1.4E-52 365.9 25.5 370 91-471 82-465 (477)
37 KOG0337 ATP-dependent RNA heli 100.0 5.4E-48 1.2E-52 371.8 19.7 364 98-468 20-386 (529)
38 TIGR00614 recQ_fam ATP-depende 100.0 7.3E-46 1.6E-50 395.3 36.6 325 116-460 6-343 (470)
39 KOG4284 DEAD box protein [Tran 100.0 5.6E-47 1.2E-51 381.3 24.0 356 93-458 19-388 (980)
40 KOG0350 DEAD-box ATP-dependent 100.0 8.2E-46 1.8E-50 363.9 26.6 350 108-463 146-553 (620)
41 TIGR00580 mfd transcription-re 100.0 1.5E-44 3.2E-49 403.2 36.8 321 104-450 434-770 (926)
42 PRK11057 ATP-dependent DNA hel 100.0 5.2E-44 1.1E-48 390.7 38.5 331 105-458 8-351 (607)
43 PRK13767 ATP-dependent helicas 100.0 9.8E-44 2.1E-48 401.5 38.0 337 106-448 18-396 (876)
44 PRK02362 ski2-like helicase; P 100.0 1.6E-43 3.4E-48 396.8 35.9 333 100-450 2-397 (737)
45 TIGR01389 recQ ATP-dependent D 100.0 4.6E-43 9.9E-48 384.8 36.7 325 113-458 4-339 (591)
46 KOG0344 ATP-dependent RNA heli 100.0 4.4E-44 9.6E-49 360.5 25.1 367 95-464 128-509 (593)
47 PRK10689 transcription-repair 100.0 2E-42 4.2E-47 394.4 38.7 320 104-449 583-918 (1147)
48 PRK00254 ski2-like helicase; P 100.0 7.2E-42 1.6E-46 382.4 35.4 337 100-451 2-389 (720)
49 KOG0329 ATP-dependent RNA heli 100.0 1.1E-43 2.3E-48 320.4 16.1 332 99-472 42-378 (387)
50 PRK01172 ski2-like helicase; P 100.0 5.9E-41 1.3E-45 373.6 33.8 331 100-450 2-378 (674)
51 COG1201 Lhr Lhr-like helicases 100.0 7.7E-41 1.7E-45 360.5 31.0 340 106-450 8-362 (814)
52 TIGR02621 cas3_GSU0051 CRISPR- 100.0 3.6E-40 7.9E-45 357.3 32.4 317 110-447 4-388 (844)
53 COG0514 RecQ Superfamily II DN 100.0 6.8E-40 1.5E-44 341.0 29.0 324 112-458 7-345 (590)
54 PRK09751 putative ATP-dependen 100.0 1.7E-39 3.7E-44 371.6 34.1 323 141-468 1-405 (1490)
55 PHA02653 RNA helicase NPH-II; 100.0 6.8E-38 1.5E-42 338.4 31.5 314 124-458 167-522 (675)
56 COG1197 Mfd Transcription-repa 100.0 6.8E-38 1.5E-42 341.8 30.1 353 69-450 536-913 (1139)
57 COG1111 MPH1 ERCC4-like helica 100.0 8.8E-37 1.9E-41 303.2 34.7 320 120-450 14-481 (542)
58 TIGR01970 DEAH_box_HrpB ATP-de 100.0 4.5E-37 9.8E-42 339.9 33.6 305 124-455 5-341 (819)
59 TIGR01587 cas3_core CRISPR-ass 100.0 2.7E-37 5.9E-42 320.4 24.2 300 138-450 1-336 (358)
60 PRK11664 ATP-dependent RNA hel 100.0 1.6E-36 3.4E-41 336.6 30.3 304 123-453 7-342 (812)
61 COG1202 Superfamily II helicas 100.0 9.2E-37 2E-41 304.6 25.0 338 97-450 192-553 (830)
62 PHA02558 uvsW UvsW helicase; P 100.0 9.8E-36 2.1E-40 319.0 32.9 305 119-446 112-449 (501)
63 COG1204 Superfamily II helicas 100.0 1.3E-35 2.8E-40 325.0 29.0 334 103-449 13-407 (766)
64 PRK09401 reverse gyrase; Revie 100.0 7.1E-35 1.5E-39 333.3 32.5 302 109-436 68-430 (1176)
65 PRK14701 reverse gyrase; Provi 100.0 4.8E-35 1E-39 341.2 30.7 327 108-458 66-464 (1638)
66 KOG0349 Putative DEAD-box RNA 100.0 4E-35 8.7E-40 283.3 21.5 301 172-473 285-670 (725)
67 TIGR03158 cas3_cyano CRISPR-as 100.0 2E-33 4.4E-38 288.0 30.6 288 125-435 1-357 (357)
68 TIGR00603 rad25 DNA repair hel 100.0 1.6E-33 3.6E-38 302.8 30.4 305 120-451 254-608 (732)
69 PRK13766 Hef nuclease; Provisi 100.0 8.7E-33 1.9E-37 314.0 37.8 321 119-450 13-479 (773)
70 PRK12898 secA preprotein trans 100.0 1.6E-33 3.5E-38 299.4 29.3 315 118-452 101-588 (656)
71 KOG0351 ATP-dependent DNA heli 100.0 1.5E-33 3.3E-38 310.3 28.7 331 109-459 251-601 (941)
72 COG1205 Distinct helicase fami 100.0 3.5E-33 7.5E-38 310.3 31.4 336 106-450 55-422 (851)
73 KOG0354 DEAD-box like helicase 100.0 3.4E-33 7.4E-38 294.0 28.5 337 106-452 47-531 (746)
74 KOG0352 ATP-dependent DNA heli 100.0 9.8E-34 2.1E-38 273.5 20.7 333 109-458 6-370 (641)
75 PRK09694 helicase Cas3; Provis 100.0 2.7E-32 5.7E-37 301.8 33.3 403 12-439 184-664 (878)
76 TIGR01054 rgy reverse gyrase. 100.0 5.8E-32 1.3E-36 310.0 32.6 290 108-422 65-409 (1171)
77 PRK09200 preprotein translocas 100.0 6.6E-32 1.4E-36 293.3 30.8 316 118-452 76-543 (790)
78 KOG0353 ATP-dependent DNA heli 100.0 1.7E-32 3.8E-37 261.0 22.4 336 102-452 74-469 (695)
79 KOG0952 DNA/RNA helicase MER3/ 100.0 5.3E-32 1.1E-36 287.7 27.4 334 117-456 106-497 (1230)
80 TIGR03714 secA2 accessory Sec 100.0 7.5E-32 1.6E-36 289.9 29.0 316 121-452 68-539 (762)
81 PRK11131 ATP-dependent RNA hel 100.0 1.6E-31 3.4E-36 301.1 31.5 303 123-454 76-415 (1294)
82 TIGR00963 secA preprotein tran 100.0 2.8E-31 6.2E-36 283.5 30.1 316 118-453 54-520 (745)
83 PRK04914 ATP-dependent helicas 100.0 3.8E-31 8.3E-36 294.4 32.4 329 120-458 151-611 (956)
84 PRK05580 primosome assembly pr 100.0 3E-30 6.5E-35 284.1 36.8 312 119-450 142-549 (679)
85 COG1061 SSL2 DNA or RNA helica 100.0 1.8E-30 3.9E-35 272.8 27.2 296 120-437 35-376 (442)
86 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.5E-29 3.3E-34 286.3 28.4 306 124-454 70-408 (1283)
87 TIGR00595 priA primosomal prot 100.0 7.8E-29 1.7E-33 263.3 29.5 289 140-448 1-379 (505)
88 KOG0947 Cytoplasmic exosomal R 100.0 6.2E-29 1.3E-33 261.4 25.6 314 117-450 293-723 (1248)
89 cd00268 DEADc DEAD-box helicas 100.0 2.7E-28 5.8E-33 232.2 24.5 200 101-304 1-202 (203)
90 PLN03142 Probable chromatin-re 100.0 1.2E-27 2.5E-32 267.4 32.0 315 121-447 169-594 (1033)
91 COG4098 comFA Superfamily II D 100.0 4E-27 8.8E-32 222.5 30.4 300 121-449 97-415 (441)
92 KOG0951 RNA helicase BRR2, DEA 100.0 2.7E-27 5.8E-32 254.9 24.6 343 106-457 296-709 (1674)
93 KOG0948 Nuclear exosomal RNA h 100.0 3.2E-27 6.9E-32 242.8 19.2 313 118-450 126-539 (1041)
94 PRK11448 hsdR type I restricti 99.9 6.8E-26 1.5E-30 258.3 28.6 316 120-448 412-814 (1123)
95 PRK13104 secA preprotein trans 99.9 7.8E-26 1.7E-30 245.2 27.1 316 122-452 83-589 (896)
96 COG4581 Superfamily II RNA hel 99.9 1.2E-25 2.7E-30 246.3 28.2 311 118-448 116-535 (1041)
97 COG1643 HrpA HrpA-like helicas 99.9 1.7E-25 3.6E-30 244.1 27.3 306 122-453 51-390 (845)
98 PRK12904 preprotein translocas 99.9 6.6E-25 1.4E-29 237.9 29.1 312 122-452 82-575 (830)
99 KOG0922 DEAH-box RNA helicase 99.9 6.9E-25 1.5E-29 225.7 26.5 306 122-455 52-395 (674)
100 PRK12906 secA preprotein trans 99.9 2.8E-25 6.1E-30 239.9 24.4 317 121-452 80-555 (796)
101 KOG0385 Chromatin remodeling c 99.9 4.1E-25 9E-30 228.3 24.3 318 121-450 167-597 (971)
102 COG1203 CRISPR-associated heli 99.9 3.6E-25 7.8E-30 246.3 23.4 321 122-450 196-550 (733)
103 PF00270 DEAD: DEAD/DEAH box h 99.9 7.5E-25 1.6E-29 202.1 19.8 163 123-292 1-168 (169)
104 KOG0950 DNA polymerase theta/e 99.9 2.6E-24 5.6E-29 228.6 25.4 351 106-473 207-631 (1008)
105 PRK12899 secA preprotein trans 99.9 9.9E-24 2.2E-28 228.3 29.5 145 103-258 66-228 (970)
106 KOG0920 ATP-dependent RNA heli 99.9 2.1E-24 4.6E-29 234.2 24.4 331 108-453 160-547 (924)
107 KOG0923 mRNA splicing factor A 99.9 1.3E-24 2.9E-29 221.0 19.6 310 117-451 261-607 (902)
108 KOG0921 Dosage compensation co 99.9 2.5E-23 5.4E-28 217.7 27.7 326 110-449 367-773 (1282)
109 KOG0387 Transcription-coupled 99.9 8.9E-23 1.9E-27 212.3 23.9 316 120-447 204-653 (923)
110 KOG0384 Chromodomain-helicase 99.9 4.2E-23 9.2E-28 223.5 21.5 318 120-450 369-811 (1373)
111 PRK13107 preprotein translocas 99.9 1.5E-22 3.2E-27 219.1 25.0 316 122-452 83-593 (908)
112 KOG0924 mRNA splicing factor A 99.9 8.4E-23 1.8E-27 208.3 21.5 308 118-451 353-698 (1042)
113 KOG0925 mRNA splicing factor A 99.9 2.6E-22 5.6E-27 197.8 19.0 327 98-450 24-387 (699)
114 COG1198 PriA Primosomal protei 99.9 3.5E-21 7.5E-26 207.4 27.3 312 120-451 197-604 (730)
115 TIGR00631 uvrb excinuclease AB 99.9 2E-20 4.3E-25 203.8 31.5 123 332-455 430-558 (655)
116 TIGR01407 dinG_rel DnaQ family 99.9 5.6E-20 1.2E-24 209.3 31.9 331 107-450 232-814 (850)
117 KOG0389 SNF2 family DNA-depend 99.9 2.4E-21 5.3E-26 201.4 18.1 318 121-449 399-885 (941)
118 KOG0392 SNF2 family DNA-depend 99.9 7.7E-21 1.7E-25 205.3 22.2 320 121-446 975-1448(1549)
119 TIGR00348 hsdR type I site-spe 99.9 6.6E-20 1.4E-24 202.2 29.9 300 122-437 239-634 (667)
120 COG0556 UvrB Helicase subunit 99.9 1.4E-19 2.9E-24 181.4 28.4 165 276-449 386-556 (663)
121 PRK05298 excinuclease ABC subu 99.9 1.3E-19 2.8E-24 199.1 31.2 142 332-474 434-590 (652)
122 COG4096 HsdR Type I site-speci 99.9 9.2E-21 2E-25 199.9 20.3 295 121-437 165-525 (875)
123 KOG0926 DEAH-box RNA helicase 99.9 3.2E-21 7E-26 200.1 16.1 304 127-450 262-704 (1172)
124 COG1110 Reverse gyrase [DNA re 99.9 9E-20 1.9E-24 195.3 27.2 286 109-421 70-416 (1187)
125 COG4889 Predicted helicase [Ge 99.9 1.8E-21 3.9E-26 203.3 11.9 339 96-447 137-583 (1518)
126 KOG0390 DNA repair protein, SN 99.8 2.8E-19 6E-24 191.5 26.6 320 121-448 238-703 (776)
127 KOG1123 RNA polymerase II tran 99.8 8.6E-21 1.9E-25 187.6 13.9 293 120-438 301-635 (776)
128 smart00487 DEXDc DEAD-like hel 99.8 2.1E-19 4.6E-24 170.1 20.4 182 117-305 4-189 (201)
129 PRK12326 preprotein translocas 99.8 1.3E-18 2.9E-23 184.2 27.7 312 121-452 78-549 (764)
130 KOG1000 Chromatin remodeling p 99.8 1.5E-19 3.2E-24 178.9 19.0 327 118-462 195-617 (689)
131 KOG4150 Predicted ATP-dependen 99.8 1.9E-19 4.1E-24 180.5 18.7 326 114-448 279-638 (1034)
132 KOG0949 Predicted helicase, DE 99.8 6.1E-19 1.3E-23 187.0 23.3 157 121-288 511-673 (1330)
133 PRK12900 secA preprotein trans 99.8 6.1E-19 1.3E-23 191.9 20.8 123 329-453 582-714 (1025)
134 PRK13103 secA preprotein trans 99.8 2.6E-18 5.7E-23 186.5 24.3 314 122-452 83-593 (913)
135 KOG0386 Chromatin remodeling c 99.8 1.6E-18 3.5E-23 184.9 15.0 319 121-450 394-836 (1157)
136 PRK07246 bifunctional ATP-depe 99.8 1.5E-16 3.3E-21 178.6 28.5 117 343-462 646-797 (820)
137 KOG0953 Mitochondrial RNA heli 99.8 1.3E-17 2.7E-22 167.8 16.9 282 137-470 192-493 (700)
138 TIGR03117 cas_csf4 CRISPR-asso 99.8 1.1E-15 2.5E-20 163.9 31.2 106 343-450 469-616 (636)
139 PRK08074 bifunctional ATP-depe 99.7 1.1E-15 2.3E-20 175.0 30.7 108 343-450 751-893 (928)
140 KOG0391 SNF2 family DNA-depend 99.7 2.1E-16 4.5E-21 169.8 22.5 117 332-448 1263-1383(1958)
141 KOG0388 SNF2 family DNA-depend 99.7 3.6E-16 7.7E-21 160.8 20.2 118 329-446 1028-1148(1185)
142 PF04851 ResIII: Type III rest 99.7 1.5E-16 3.3E-21 148.6 16.0 150 121-288 3-184 (184)
143 PRK12903 secA preprotein trans 99.7 5.6E-16 1.2E-20 166.7 21.7 315 121-451 78-540 (925)
144 cd00046 DEXDc DEAD-like helica 99.7 3.3E-16 7.1E-21 139.4 16.8 143 137-286 1-144 (144)
145 CHL00122 secA preprotein trans 99.7 1.7E-15 3.7E-20 164.1 22.9 124 122-258 77-209 (870)
146 cd00079 HELICc Helicase superf 99.7 2.6E-16 5.6E-21 138.3 13.1 118 329-446 12-131 (131)
147 KOG4439 RNA polymerase II tran 99.7 1.6E-15 3.5E-20 156.4 18.2 117 331-447 731-853 (901)
148 TIGR02562 cas3_yersinia CRISPR 99.7 1.7E-14 3.6E-19 158.4 23.7 309 120-439 407-881 (1110)
149 PRK14873 primosome assembly pr 99.6 2.7E-14 5.9E-19 155.6 23.6 283 142-450 166-539 (665)
150 PF00271 Helicase_C: Helicase 99.6 6.1E-16 1.3E-20 122.3 8.1 72 367-438 7-78 (78)
151 KOG1002 Nucleotide excision re 99.6 1.5E-14 3.3E-19 143.5 17.7 107 344-450 638-749 (791)
152 PRK12902 secA preprotein trans 99.6 7.8E-14 1.7E-18 151.0 23.9 124 122-258 86-218 (939)
153 PRK11747 dinG ATP-dependent DN 99.6 2.9E-13 6.3E-18 150.3 29.1 105 343-450 533-674 (697)
154 COG1199 DinG Rad3-related DNA 99.6 7.1E-13 1.5E-17 148.5 29.6 103 344-449 479-616 (654)
155 KOG0951 RNA helicase BRR2, DEA 99.6 2.5E-13 5.5E-18 148.3 20.6 309 122-457 1144-1501(1674)
156 COG0553 HepA Superfamily II DN 99.5 2.6E-13 5.7E-18 158.1 21.4 321 120-449 337-819 (866)
157 PF02399 Herpes_ori_bp: Origin 99.5 9.6E-13 2.1E-17 141.3 22.6 290 138-450 51-388 (824)
158 KOG1015 Transcription regulato 99.5 1.6E-12 3.5E-17 138.0 22.3 119 330-448 1127-1273(1567)
159 PF06862 DUF1253: Protein of u 99.5 2.2E-11 4.7E-16 124.7 27.5 286 172-458 36-423 (442)
160 smart00490 HELICc helicase sup 99.5 1.8E-13 3.8E-18 109.3 7.9 80 359-438 2-82 (82)
161 TIGR00604 rad3 DNA repair heli 99.5 3.1E-11 6.7E-16 135.4 28.6 73 118-196 7-83 (705)
162 PRK12901 secA preprotein trans 99.5 3.6E-12 7.8E-17 139.7 19.8 117 333-451 617-742 (1112)
163 PF07652 Flavi_DEAD: Flaviviru 99.4 3.4E-12 7.3E-17 108.9 9.3 135 136-290 4-140 (148)
164 PF00176 SNF2_N: SNF2 family N 99.4 6.2E-12 1.3E-16 127.3 12.8 154 125-288 1-174 (299)
165 KOG2340 Uncharacterized conser 99.3 6.7E-10 1.4E-14 112.1 20.8 340 118-458 213-676 (698)
166 COG0610 Type I site-specific r 99.2 2.3E-09 5E-14 122.6 25.1 284 137-437 274-636 (962)
167 KOG1016 Predicted DNA helicase 99.2 1.4E-09 3.1E-14 113.8 20.6 109 344-452 719-849 (1387)
168 smart00488 DEXDc2 DEAD-like he 99.1 7.2E-10 1.6E-14 110.3 14.2 74 120-196 7-84 (289)
169 smart00489 DEXDc3 DEAD-like he 99.1 7.2E-10 1.6E-14 110.3 14.2 74 120-196 7-84 (289)
170 COG0653 SecA Preprotein transl 99.1 3E-09 6.5E-14 115.6 16.2 317 122-451 79-546 (822)
171 KOG0921 Dosage compensation co 98.9 2.9E-08 6.4E-13 106.1 14.0 46 120-165 405-450 (1282)
172 PF07517 SecA_DEAD: SecA DEAD- 98.8 4.6E-08 1E-12 94.6 12.9 126 120-258 76-210 (266)
173 PRK15483 type III restriction- 98.7 1.7E-07 3.8E-12 104.4 12.4 141 137-288 60-240 (986)
174 PF02562 PhoH: PhoH-like prote 98.6 3.8E-07 8.3E-12 84.7 10.3 149 119-285 2-155 (205)
175 KOG1001 Helicase-like transcri 98.6 4.4E-07 9.5E-12 99.0 12.4 101 346-446 541-644 (674)
176 PF13604 AAA_30: AAA domain; P 98.5 4.4E-07 9.6E-12 85.1 10.2 123 121-285 1-130 (196)
177 PF13872 AAA_34: P-loop contai 98.5 1.5E-06 3.3E-11 84.2 13.2 171 103-292 25-226 (303)
178 PF13086 AAA_11: AAA domain; P 98.5 1.3E-06 2.8E-11 84.8 11.9 74 121-195 1-75 (236)
179 COG3587 Restriction endonuclea 98.5 5.5E-06 1.2E-10 89.2 16.6 46 392-437 482-527 (985)
180 TIGR00596 rad1 DNA repair prot 98.4 7.2E-06 1.6E-10 91.7 17.3 67 221-287 7-73 (814)
181 KOG0952 DNA/RNA helicase MER3/ 98.4 2.3E-07 5.1E-12 101.3 4.4 243 137-395 944-1207(1230)
182 KOG1802 RNA helicase nonsense 98.4 5.2E-06 1.1E-10 86.7 13.5 83 113-205 402-484 (935)
183 PRK10536 hypothetical protein; 98.2 1.8E-05 3.9E-10 75.6 12.8 143 117-282 55-209 (262)
184 PRK10875 recD exonuclease V su 98.2 2.4E-05 5.2E-10 85.4 15.3 143 122-285 153-301 (615)
185 TIGR00376 DNA helicase, putati 98.2 0.00019 4.2E-09 79.3 22.2 68 120-196 156-224 (637)
186 KOG1803 DNA helicase [Replicat 98.2 1E-05 2.2E-10 84.4 10.3 66 120-194 184-250 (649)
187 PF09848 DUF2075: Uncharacteri 98.2 1E-05 2.2E-10 83.6 10.2 108 138-272 3-117 (352)
188 PF12340 DUF3638: Protein of u 98.1 2.2E-05 4.8E-10 73.5 11.2 126 100-236 4-145 (229)
189 PF13307 Helicase_C_2: Helicas 98.1 1.1E-05 2.4E-10 73.5 8.9 104 344-449 9-149 (167)
190 TIGR01447 recD exodeoxyribonuc 98.1 4.3E-05 9.3E-10 83.3 14.4 142 123-284 147-294 (586)
191 TIGR01448 recD_rel helicase, p 98.1 4E-05 8.7E-10 86.0 14.3 131 114-284 316-451 (720)
192 KOG1132 Helicase of the DEAD s 98.0 3.2E-05 6.9E-10 83.9 11.4 140 119-258 19-260 (945)
193 KOG3973 Uncharacterized conser 98.0 8.5E-05 1.8E-09 71.4 12.4 29 108-136 6-34 (465)
194 COG3421 Uncharacterized protei 97.9 0.00012 2.6E-09 76.1 11.4 140 141-288 2-167 (812)
195 PRK13889 conjugal transfer rel 97.9 0.00024 5.2E-09 81.3 14.9 124 120-285 345-470 (988)
196 COG1875 NYN ribonuclease and A 97.8 0.00012 2.6E-09 72.1 10.2 146 117-283 224-385 (436)
197 TIGR02768 TraA_Ti Ti-type conj 97.8 0.00041 8.9E-09 78.3 15.2 122 120-283 351-474 (744)
198 PF13245 AAA_19: Part of AAA d 97.8 0.00012 2.6E-09 56.6 7.4 60 129-193 2-62 (76)
199 PRK04296 thymidine kinase; Pro 97.7 0.00011 2.4E-09 68.6 7.1 107 138-284 4-113 (190)
200 PRK13826 Dtr system oriT relax 97.7 0.001 2.2E-08 76.7 15.8 137 106-285 367-505 (1102)
201 KOG1805 DNA replication helica 97.6 0.00038 8.2E-09 76.5 10.4 125 120-259 668-810 (1100)
202 KOG0298 DEAD box-containing he 97.5 0.00035 7.7E-09 78.8 8.6 154 136-293 374-557 (1394)
203 PRK08181 transposase; Validate 97.4 0.0019 4.1E-08 63.4 12.1 109 132-288 102-211 (269)
204 KOG0383 Predicted helicase [Ge 97.4 7.2E-06 1.6E-10 88.6 -5.2 74 333-406 619-696 (696)
205 PRK06526 transposase; Provisio 97.4 0.00074 1.6E-08 65.8 8.9 110 131-288 93-203 (254)
206 KOG3973 Uncharacterized conser 97.4 0.0021 4.6E-08 62.1 11.2 10 381-390 241-250 (465)
207 PF13401 AAA_22: AAA domain; P 97.3 0.00073 1.6E-08 58.8 7.5 18 136-153 4-21 (131)
208 TIGR02760 TraI_TIGR conjugativ 97.3 0.012 2.5E-07 73.3 19.9 238 120-394 428-687 (1960)
209 cd00009 AAA The AAA+ (ATPases 97.3 0.0027 5.8E-08 56.0 11.0 18 136-153 19-36 (151)
210 PHA02533 17 large terminase pr 97.2 0.0022 4.8E-08 69.2 11.0 146 120-285 58-209 (534)
211 PF13871 Helicase_C_4: Helicas 97.2 0.00094 2E-08 64.9 6.9 59 384-442 52-118 (278)
212 PF05970 PIF1: PIF1-like helic 97.2 0.00091 2E-08 69.2 7.3 59 122-189 2-66 (364)
213 PRK12723 flagellar biosynthesi 97.1 0.0097 2.1E-07 61.5 13.9 130 137-297 175-309 (388)
214 PRK11634 ATP-dependent RNA hel 97.0 0.4 8.8E-06 53.4 26.8 71 173-251 245-319 (629)
215 PF00580 UvrD-helicase: UvrD/R 97.0 0.0014 3E-08 66.6 7.1 123 122-255 1-125 (315)
216 PRK14974 cell division protein 97.0 0.009 1.9E-07 60.5 12.7 55 244-298 221-276 (336)
217 PRK12377 putative replication 97.0 0.012 2.5E-07 57.1 12.4 46 137-192 102-147 (248)
218 KOG1131 RNA polymerase II tran 96.9 0.0035 7.5E-08 64.5 8.7 73 118-195 13-89 (755)
219 PF14617 CMS1: U3-containing 9 96.9 0.002 4.4E-08 61.8 6.5 85 172-256 125-212 (252)
220 KOG0989 Replication factor C, 96.9 0.004 8.7E-08 60.3 8.4 57 241-298 125-184 (346)
221 PRK08116 hypothetical protein; 96.9 0.012 2.6E-07 58.0 12.2 107 138-290 116-225 (268)
222 PRK06921 hypothetical protein; 96.9 0.015 3.2E-07 57.2 12.8 26 136-162 117-142 (266)
223 PRK06893 DNA replication initi 96.8 0.0043 9.3E-08 59.8 8.3 46 243-288 89-136 (229)
224 PRK13709 conjugal transfer nic 96.8 0.014 3E-07 70.8 13.6 127 120-285 966-1099(1747)
225 PRK07952 DNA replication prote 96.8 0.024 5.2E-07 54.8 12.8 46 243-288 160-207 (244)
226 PRK05703 flhF flagellar biosyn 96.8 0.022 4.9E-07 59.9 13.6 67 227-297 285-354 (424)
227 PRK05642 DNA replication initi 96.8 0.0057 1.2E-07 59.1 8.5 46 243-288 95-141 (234)
228 smart00492 HELICc3 helicase su 96.8 0.0091 2E-07 52.4 8.9 50 373-422 27-79 (141)
229 PRK14712 conjugal transfer nic 96.7 0.013 2.7E-07 70.2 12.5 65 120-189 834-900 (1623)
230 smart00382 AAA ATPases associa 96.7 0.0027 5.9E-08 55.5 5.6 18 136-153 2-19 (148)
231 cd00561 CobA_CobO_BtuR ATP:cor 96.7 0.014 3.1E-07 52.0 9.9 139 139-294 5-146 (159)
232 PRK11054 helD DNA helicase IV; 96.7 0.016 3.4E-07 64.8 12.3 79 112-197 187-265 (684)
233 cd01124 KaiC KaiC is a circadi 96.7 0.018 4E-07 53.4 11.0 48 139-196 2-49 (187)
234 PRK11889 flhF flagellar biosyn 96.6 0.037 8.1E-07 56.5 13.1 127 137-297 242-374 (436)
235 PRK14722 flhF flagellar biosyn 96.6 0.009 1.9E-07 61.2 8.8 126 136-297 137-269 (374)
236 PRK08084 DNA replication initi 96.6 0.0088 1.9E-07 57.9 8.4 17 137-153 46-62 (235)
237 COG2256 MGS1 ATPase related to 96.6 0.027 5.9E-07 56.8 11.7 37 247-288 106-142 (436)
238 COG1435 Tdk Thymidine kinase [ 96.5 0.02 4.4E-07 52.1 9.6 113 139-287 7-119 (201)
239 cd01120 RecA-like_NTPases RecA 96.5 0.046 1E-06 49.2 12.5 37 139-184 2-38 (165)
240 PRK07764 DNA polymerase III su 96.5 0.0093 2E-07 67.7 9.2 40 243-283 118-157 (824)
241 TIGR01547 phage_term_2 phage t 96.5 0.008 1.7E-07 63.3 8.1 143 138-298 3-152 (396)
242 cd01122 GP4d_helicase GP4d_hel 96.5 0.011 2.3E-07 58.7 8.6 119 132-260 26-155 (271)
243 PRK08727 hypothetical protein; 96.5 0.014 3E-07 56.4 9.1 48 243-290 91-140 (233)
244 PRK06835 DNA replication prote 96.5 0.057 1.2E-06 54.7 13.7 45 136-190 183-227 (329)
245 PF00448 SRP54: SRP54-type pro 96.5 0.016 3.4E-07 54.2 9.0 55 244-298 82-137 (196)
246 smart00491 HELICc2 helicase su 96.4 0.015 3.2E-07 51.3 8.1 70 379-448 30-137 (142)
247 PRK10919 ATP-dependent DNA hel 96.4 0.013 2.8E-07 65.9 9.6 71 121-198 2-72 (672)
248 PF13173 AAA_14: AAA domain 96.4 0.034 7.4E-07 48.1 10.0 38 245-285 61-98 (128)
249 PF05127 Helicase_RecD: Helica 96.4 0.0013 2.7E-08 59.7 1.0 124 140-287 1-124 (177)
250 TIGR03420 DnaA_homol_Hda DnaA 96.3 0.026 5.6E-07 54.3 10.1 43 245-287 90-133 (226)
251 PTZ00293 thymidine kinase; Pro 96.3 0.029 6.4E-07 52.4 9.7 35 139-182 7-41 (211)
252 PRK11331 5-methylcytosine-spec 96.3 0.025 5.5E-07 58.9 10.2 35 120-154 178-212 (459)
253 COG1484 DnaC DNA replication p 96.3 0.013 2.9E-07 57.1 7.7 50 135-194 104-153 (254)
254 COG1444 Predicted P-loop ATPas 96.3 0.053 1.1E-06 59.9 12.8 146 114-287 207-357 (758)
255 TIGR01075 uvrD DNA helicase II 96.3 0.022 4.9E-07 64.7 10.5 109 120-256 3-114 (715)
256 PRK05707 DNA polymerase III su 96.3 0.037 8E-07 56.2 11.0 34 122-155 4-41 (328)
257 PF00308 Bac_DnaA: Bacterial d 96.2 0.013 2.9E-07 55.9 7.3 106 138-289 36-143 (219)
258 PRK09183 transposase/IS protei 96.2 0.047 1E-06 53.5 11.3 24 133-156 99-122 (259)
259 PRK05986 cob(I)alamin adenolsy 96.2 0.043 9.4E-07 50.4 10.2 144 135-295 21-167 (191)
260 PRK12727 flagellar biosynthesi 96.2 0.14 2.9E-06 54.7 15.1 65 228-297 415-481 (559)
261 PRK00149 dnaA chromosomal repl 96.2 0.042 9E-07 58.9 11.7 108 137-290 149-258 (450)
262 KOG2028 ATPase related to the 96.2 0.02 4.2E-07 56.8 8.1 49 244-297 221-269 (554)
263 PRK11773 uvrD DNA-dependent he 96.2 0.024 5.2E-07 64.4 10.3 109 120-256 8-119 (721)
264 PF02572 CobA_CobO_BtuR: ATP:c 96.1 0.16 3.5E-06 46.0 13.2 139 139-294 6-147 (172)
265 PHA03333 putative ATPase subun 96.1 0.09 2E-06 57.2 13.4 146 122-286 170-332 (752)
266 PRK12402 replication factor C 96.1 0.035 7.5E-07 57.0 10.3 40 244-284 124-163 (337)
267 PF03354 Terminase_1: Phage Te 96.1 0.02 4.3E-07 61.7 8.7 70 124-198 1-79 (477)
268 TIGR02760 TraI_TIGR conjugativ 96.1 0.036 7.9E-07 69.1 11.9 65 120-189 1018-1084(1960)
269 PRK08903 DnaA regulatory inact 96.1 0.034 7.4E-07 53.5 9.5 43 245-288 90-133 (227)
270 PRK07003 DNA polymerase III su 96.0 0.022 4.7E-07 62.8 8.5 40 244-284 118-157 (830)
271 TIGR02785 addA_Gpos recombinat 96.0 0.042 9.2E-07 66.1 11.8 124 121-256 1-126 (1232)
272 PRK00771 signal recognition pa 96.0 0.11 2.4E-06 54.6 13.6 52 246-297 176-228 (437)
273 PRK14087 dnaA chromosomal repl 96.0 0.051 1.1E-06 57.8 11.1 108 138-289 143-252 (450)
274 TIGR00708 cobA cob(I)alamin ad 96.0 0.074 1.6E-06 48.1 10.3 52 243-294 95-148 (173)
275 TIGR01074 rep ATP-dependent DN 96.0 0.058 1.3E-06 61.0 12.0 108 122-256 2-112 (664)
276 TIGR00362 DnaA chromosomal rep 96.0 0.038 8.3E-07 58.3 9.8 45 138-190 138-182 (405)
277 PRK12422 chromosomal replicati 95.9 0.043 9.4E-07 58.2 10.0 109 137-293 142-252 (445)
278 PRK14088 dnaA chromosomal repl 95.8 0.072 1.6E-06 56.6 11.3 111 138-293 132-244 (440)
279 PRK14086 dnaA chromosomal repl 95.8 0.035 7.5E-07 60.3 8.9 107 138-290 316-424 (617)
280 PRK08769 DNA polymerase III su 95.8 0.037 8E-07 55.7 8.5 143 120-286 3-153 (319)
281 PF00004 AAA: ATPase family as 95.8 0.082 1.8E-06 45.6 9.9 15 139-153 1-15 (132)
282 COG1419 FlhF Flagellar GTP-bin 95.8 0.19 4E-06 51.5 13.4 130 136-297 203-335 (407)
283 PRK13341 recombination factor 95.8 0.094 2E-06 58.9 12.4 43 245-292 109-151 (725)
284 COG4626 Phage terminase-like p 95.8 0.068 1.5E-06 56.5 10.4 148 119-285 59-224 (546)
285 COG3973 Superfamily I DNA and 95.7 0.081 1.8E-06 56.1 10.7 90 105-197 188-284 (747)
286 TIGR01073 pcrA ATP-dependent D 95.7 0.047 1E-06 62.3 10.1 108 120-255 3-113 (726)
287 PRK08533 flagellar accessory p 95.7 0.094 2E-06 50.5 10.7 53 134-196 22-74 (230)
288 PF05621 TniB: Bacterial TniB 95.7 0.091 2E-06 51.7 10.4 113 137-278 62-180 (302)
289 TIGR03877 thermo_KaiC_1 KaiC d 95.7 0.1 2.2E-06 50.6 10.8 52 136-197 21-72 (237)
290 PRK14964 DNA polymerase III su 95.7 0.065 1.4E-06 57.1 10.0 20 137-156 36-55 (491)
291 TIGR00580 mfd transcription-re 95.6 0.13 2.8E-06 59.4 13.0 79 173-257 660-742 (926)
292 PTZ00112 origin recognition co 95.6 0.2 4.4E-06 56.1 13.5 41 244-285 868-909 (1164)
293 PRK14958 DNA polymerase III su 95.6 0.041 8.9E-07 59.4 8.2 39 244-283 118-156 (509)
294 PRK14723 flhF flagellar biosyn 95.6 0.27 5.8E-06 55.1 14.6 68 226-297 248-317 (767)
295 KOG0733 Nuclear AAA ATPase (VC 95.5 0.11 2.4E-06 55.3 10.8 58 93-153 502-562 (802)
296 PHA03368 DNA packaging termina 95.5 0.062 1.4E-06 58.1 9.3 130 137-287 255-391 (738)
297 PRK11823 DNA repair protein Ra 95.5 0.14 3E-06 54.5 12.0 91 136-259 80-170 (446)
298 PHA02544 44 clamp loader, smal 95.5 0.069 1.5E-06 54.3 9.4 41 244-284 99-139 (316)
299 PRK07414 cob(I)yrinic acid a,c 95.5 0.2 4.2E-06 45.5 11.0 141 139-294 24-166 (178)
300 PLN03025 replication factor C 95.5 0.15 3.2E-06 51.9 11.7 40 244-285 98-137 (319)
301 PRK12323 DNA polymerase III su 95.5 0.094 2E-06 57.2 10.4 43 243-286 122-164 (700)
302 PRK06731 flhF flagellar biosyn 95.4 0.27 5.9E-06 48.3 12.8 128 136-297 75-208 (270)
303 PF13177 DNA_pol3_delta2: DNA 95.4 0.055 1.2E-06 48.9 7.4 44 244-288 101-144 (162)
304 PRK10689 transcription-repair 95.4 0.067 1.5E-06 63.3 9.9 79 173-257 809-891 (1147)
305 PRK05973 replicative DNA helic 95.4 0.13 2.8E-06 49.4 10.1 83 104-196 23-114 (237)
306 TIGR03600 phage_DnaB phage rep 95.4 0.16 3.4E-06 54.0 11.8 116 134-259 192-319 (421)
307 PF05496 RuvB_N: Holliday junc 95.4 0.037 8E-07 52.0 6.1 16 138-153 52-67 (233)
308 PRK13342 recombination factor 95.4 0.14 3E-06 54.1 11.3 38 245-287 92-129 (413)
309 cd00984 DnaB_C DnaB helicase C 95.3 0.096 2.1E-06 50.9 9.3 40 134-181 11-50 (242)
310 PRK08939 primosomal protein Dn 95.3 0.22 4.7E-06 50.1 11.9 25 136-161 156-180 (306)
311 TIGR02881 spore_V_K stage V sp 95.3 0.19 4E-06 49.6 11.3 18 137-154 43-60 (261)
312 PRK14956 DNA polymerase III su 95.3 0.021 4.6E-07 60.1 4.7 18 138-155 42-59 (484)
313 PF05876 Terminase_GpA: Phage 95.3 0.028 6.1E-07 61.4 5.8 68 121-196 16-86 (557)
314 TIGR03689 pup_AAA proteasome A 95.2 0.059 1.3E-06 57.7 7.9 18 136-153 216-233 (512)
315 PRK04195 replication factor C 95.2 0.15 3.3E-06 55.0 11.2 18 136-153 39-56 (482)
316 COG2109 BtuR ATP:corrinoid ade 95.2 0.25 5.4E-06 44.8 10.5 142 139-296 31-175 (198)
317 PHA03372 DNA packaging termina 95.2 0.23 4.9E-06 53.3 11.9 130 137-286 203-337 (668)
318 KOG0344 ATP-dependent RNA heli 95.2 0.23 5.1E-06 52.4 11.8 102 140-255 361-466 (593)
319 PRK14960 DNA polymerase III su 95.2 0.094 2E-06 57.3 9.3 39 244-283 117-155 (702)
320 PRK09111 DNA polymerase III su 95.1 0.075 1.6E-06 58.4 8.7 40 243-283 130-169 (598)
321 PRK06871 DNA polymerase III su 95.1 0.15 3.3E-06 51.4 10.2 42 243-285 105-146 (325)
322 TIGR02640 gas_vesic_GvpN gas v 95.1 0.26 5.6E-06 48.5 11.7 28 127-154 12-39 (262)
323 PRK12726 flagellar biosynthesi 95.1 0.56 1.2E-05 48.0 14.1 119 137-288 207-329 (407)
324 PRK06904 replicative DNA helic 95.1 0.27 5.8E-06 52.7 12.6 115 135-258 220-347 (472)
325 PRK10917 ATP-dependent DNA hel 95.1 0.093 2E-06 59.2 9.4 96 326-421 291-393 (681)
326 PRK00411 cdc6 cell division co 95.1 0.16 3.5E-06 53.4 10.8 24 137-161 56-79 (394)
327 COG0593 DnaA ATPase involved i 95.0 0.072 1.6E-06 55.0 7.6 47 245-291 175-223 (408)
328 COG1219 ClpX ATP-dependent pro 95.0 0.039 8.4E-07 53.9 5.3 26 136-163 97-122 (408)
329 PRK08691 DNA polymerase III su 95.0 0.083 1.8E-06 58.1 8.4 40 243-283 117-156 (709)
330 PRK06645 DNA polymerase III su 95.0 0.075 1.6E-06 57.1 8.0 20 137-156 44-63 (507)
331 cd01121 Sms Sms (bacterial rad 95.0 0.3 6.6E-06 50.4 12.1 90 136-258 82-171 (372)
332 KOG0730 AAA+-type ATPase [Post 95.0 0.22 4.9E-06 53.5 11.1 57 94-153 426-485 (693)
333 COG1474 CDC6 Cdc6-related prot 94.9 0.4 8.6E-06 49.5 12.8 29 244-273 122-150 (366)
334 COG2805 PilT Tfp pilus assembl 94.9 0.085 1.9E-06 51.3 7.3 24 139-163 128-151 (353)
335 PHA00729 NTP-binding motif con 94.9 0.31 6.7E-06 46.2 11.0 75 222-296 59-138 (226)
336 PRK06964 DNA polymerase III su 94.9 0.12 2.6E-06 52.6 8.8 34 122-155 2-40 (342)
337 COG1197 Mfd Transcription-repa 94.9 0.31 6.8E-06 56.1 12.7 140 125-274 731-898 (1139)
338 KOG0742 AAA+-type ATPase [Post 94.8 0.045 9.8E-07 55.1 5.3 48 99-153 352-401 (630)
339 PRK14961 DNA polymerase III su 94.8 0.074 1.6E-06 55.1 7.2 39 244-283 118-156 (363)
340 PRK06067 flagellar accessory p 94.7 0.19 4.2E-06 48.5 9.6 51 136-196 25-75 (234)
341 TIGR03881 KaiC_arch_4 KaiC dom 94.7 0.27 5.8E-06 47.3 10.5 51 135-195 19-69 (229)
342 KOG0991 Replication factor C, 94.7 0.12 2.7E-06 48.2 7.4 39 244-283 112-150 (333)
343 CHL00181 cbbX CbbX; Provisiona 94.7 0.47 1E-05 47.3 12.3 20 136-155 59-78 (287)
344 TIGR00064 ftsY signal recognit 94.7 0.6 1.3E-05 46.1 12.9 55 244-298 153-214 (272)
345 PRK14873 primosome assembly pr 94.7 0.17 3.7E-06 56.3 10.0 92 328-420 171-266 (665)
346 PRK07471 DNA polymerase III su 94.7 0.12 2.6E-06 53.3 8.2 43 243-286 139-181 (365)
347 KOG0738 AAA+-type ATPase [Post 94.6 0.16 3.5E-06 51.1 8.6 57 97-153 181-262 (491)
348 PF03796 DnaB_C: DnaB-like hel 94.6 0.07 1.5E-06 52.5 6.2 140 136-285 19-179 (259)
349 COG2909 MalT ATP-dependent tra 94.6 0.1 2.2E-06 57.7 7.8 46 243-288 127-172 (894)
350 PRK14949 DNA polymerase III su 94.6 0.088 1.9E-06 59.4 7.4 38 244-282 118-155 (944)
351 PRK14959 DNA polymerase III su 94.5 0.058 1.3E-06 58.9 5.8 20 137-156 39-58 (624)
352 TIGR01425 SRP54_euk signal rec 94.5 0.54 1.2E-05 49.2 12.7 54 244-297 181-235 (429)
353 PRK05580 primosome assembly pr 94.5 0.2 4.4E-06 56.4 10.3 91 329-420 174-267 (679)
354 COG4098 comFA Superfamily II D 94.5 0.2 4.3E-06 49.5 8.6 81 173-259 305-387 (441)
355 PRK07004 replicative DNA helic 94.5 0.19 4.2E-06 53.6 9.6 112 137-258 214-337 (460)
356 TIGR03015 pepcterm_ATPase puta 94.4 0.15 3.2E-06 50.5 8.1 32 122-153 24-60 (269)
357 TIGR02928 orc1/cdc6 family rep 94.4 0.24 5.2E-06 51.5 9.9 24 137-161 41-64 (365)
358 COG2255 RuvB Holliday junction 94.4 0.23 5E-06 48.0 8.7 16 138-153 54-69 (332)
359 PRK08840 replicative DNA helic 94.4 0.49 1.1E-05 50.5 12.3 117 133-258 214-342 (464)
360 PRK07940 DNA polymerase III su 94.4 0.2 4.4E-06 52.1 9.2 42 243-285 115-156 (394)
361 PF06745 KaiC: KaiC; InterPro 94.3 0.074 1.6E-06 51.1 5.6 130 136-285 19-159 (226)
362 PRK12724 flagellar biosynthesi 94.3 0.57 1.2E-05 48.7 12.1 53 244-296 298-355 (432)
363 KOG0331 ATP-dependent RNA heli 94.3 0.17 3.8E-06 53.5 8.6 72 171-250 339-414 (519)
364 KOG0739 AAA+-type ATPase [Post 94.3 1.4 3E-05 43.0 13.7 142 96-293 127-284 (439)
365 TIGR00643 recG ATP-dependent D 94.3 0.15 3.3E-06 57.0 8.6 95 327-421 266-367 (630)
366 KOG1513 Nuclear helicase MOP-3 94.3 0.063 1.4E-06 58.3 5.2 163 121-294 264-462 (1300)
367 TIGR01243 CDC48 AAA family ATP 94.3 0.24 5.2E-06 56.5 10.4 55 97-153 448-504 (733)
368 COG1222 RPT1 ATP-dependent 26S 94.3 0.66 1.4E-05 46.5 11.8 17 137-153 186-202 (406)
369 PRK07994 DNA polymerase III su 94.3 0.35 7.6E-06 53.4 11.1 38 244-282 118-155 (647)
370 TIGR00595 priA primosomal prot 94.3 0.21 4.6E-06 54.0 9.4 92 328-420 8-102 (505)
371 PRK06090 DNA polymerase III su 94.2 0.19 4.1E-06 50.6 8.3 43 243-286 106-148 (319)
372 PRK14952 DNA polymerase III su 94.2 0.18 3.8E-06 55.2 8.6 40 243-283 116-155 (584)
373 PHA00350 putative assembly pro 94.2 0.33 7.3E-06 50.1 10.2 17 139-155 4-20 (399)
374 PRK08699 DNA polymerase III su 94.2 0.39 8.4E-06 48.7 10.6 42 243-285 111-152 (325)
375 PTZ00454 26S protease regulato 94.2 0.56 1.2E-05 49.0 11.9 57 94-153 137-196 (398)
376 PF03969 AFG1_ATPase: AFG1-lik 94.2 0.41 8.9E-06 49.2 10.7 46 244-290 126-172 (362)
377 KOG0745 Putative ATP-dependent 94.1 0.065 1.4E-06 54.5 4.6 25 137-163 227-251 (564)
378 PRK08506 replicative DNA helic 94.1 0.37 8E-06 51.7 10.8 111 137-258 193-315 (472)
379 PRK04328 hypothetical protein; 94.1 0.18 3.9E-06 49.2 7.7 52 136-197 23-74 (249)
380 PRK03992 proteasome-activating 94.1 0.27 5.8E-06 51.4 9.5 17 137-153 166-182 (389)
381 COG3972 Superfamily I DNA and 94.0 0.26 5.7E-06 51.0 8.8 73 117-197 158-230 (660)
382 PRK06620 hypothetical protein; 94.0 0.14 3.1E-06 48.6 6.6 17 137-153 45-61 (214)
383 cd03115 SRP The signal recogni 94.0 0.76 1.6E-05 41.9 11.4 54 244-297 81-135 (173)
384 PRK05748 replicative DNA helic 94.0 0.44 9.6E-06 51.0 11.1 113 136-258 203-327 (448)
385 PRK08006 replicative DNA helic 94.0 0.71 1.5E-05 49.4 12.5 139 136-283 224-383 (471)
386 PRK09112 DNA polymerase III su 93.9 0.47 1E-05 48.7 10.7 42 243-285 139-180 (351)
387 KOG0741 AAA+-type ATPase [Post 93.9 0.16 3.5E-06 53.1 7.1 57 94-153 211-273 (744)
388 PRK08760 replicative DNA helic 93.9 0.32 6.9E-06 52.2 9.7 111 137-258 230-352 (476)
389 PRK11034 clpA ATP-dependent Cl 93.9 0.47 1E-05 53.7 11.4 45 246-290 279-327 (758)
390 PRK14957 DNA polymerase III su 93.8 0.16 3.4E-06 55.0 7.4 40 243-283 117-156 (546)
391 PRK05896 DNA polymerase III su 93.8 0.16 3.5E-06 55.3 7.3 19 137-155 39-57 (605)
392 PRK14951 DNA polymerase III su 93.8 0.26 5.6E-06 54.2 9.0 17 139-155 41-57 (618)
393 PRK14965 DNA polymerase III su 93.8 0.36 7.8E-06 53.2 10.1 40 243-283 117-156 (576)
394 TIGR02880 cbbX_cfxQ probable R 93.7 0.35 7.5E-06 48.2 9.1 19 136-154 58-76 (284)
395 PRK14721 flhF flagellar biosyn 93.7 0.88 1.9E-05 47.6 12.2 18 137-154 192-209 (420)
396 TIGR03499 FlhF flagellar biosy 93.6 0.2 4.4E-06 49.8 7.3 18 138-155 196-213 (282)
397 PRK14963 DNA polymerase III su 93.6 0.23 5E-06 53.6 8.1 16 139-154 39-54 (504)
398 PRK00440 rfc replication facto 93.6 0.92 2E-05 46.0 12.4 39 244-283 101-139 (319)
399 TIGR00665 DnaB replicative DNA 93.6 0.57 1.2E-05 49.9 11.1 139 136-285 195-354 (434)
400 PF06733 DEAD_2: DEAD_2; Inte 93.6 0.048 1E-06 50.0 2.5 44 216-259 114-159 (174)
401 PRK07993 DNA polymerase III su 93.6 0.17 3.7E-06 51.6 6.7 33 122-154 3-42 (334)
402 PRK05636 replicative DNA helic 93.5 0.39 8.5E-06 51.8 9.6 110 138-258 267-388 (505)
403 PRK07133 DNA polymerase III su 93.5 0.16 3.4E-06 56.5 6.7 18 138-155 42-59 (725)
404 PRK13833 conjugal transfer pro 93.5 0.22 4.9E-06 50.2 7.2 63 114-185 123-186 (323)
405 PRK04841 transcriptional regul 93.4 0.83 1.8E-05 53.8 13.2 44 245-288 121-164 (903)
406 KOG0729 26S proteasome regulat 93.4 1.2 2.7E-05 42.5 11.4 18 136-153 211-228 (435)
407 COG0470 HolB ATPase involved i 93.4 0.62 1.3E-05 47.4 10.7 39 244-283 108-146 (325)
408 TIGR00416 sms DNA repair prote 93.4 0.63 1.4E-05 49.6 10.8 91 136-259 94-184 (454)
409 TIGR00678 holB DNA polymerase 93.3 1.1 2.4E-05 41.5 11.3 39 243-282 94-132 (188)
410 PF05729 NACHT: NACHT domain 93.3 0.56 1.2E-05 42.1 9.2 16 138-153 2-17 (166)
411 PF01695 IstB_IS21: IstB-like 93.2 0.2 4.3E-06 46.1 6.0 48 132-189 43-90 (178)
412 PF01443 Viral_helicase1: Vira 93.2 0.072 1.6E-06 51.4 3.2 13 139-151 1-13 (234)
413 COG3267 ExeA Type II secretory 93.2 0.77 1.7E-05 43.9 9.7 27 133-160 47-74 (269)
414 KOG0732 AAA+-type ATPase conta 93.2 0.47 1E-05 54.4 9.8 147 96-288 259-416 (1080)
415 TIGR03878 thermo_KaiC_2 KaiC d 93.1 0.97 2.1E-05 44.4 11.1 37 136-181 36-72 (259)
416 PRK14969 DNA polymerase III su 93.1 0.51 1.1E-05 51.4 9.9 40 243-283 117-156 (527)
417 PRK10867 signal recognition pa 93.1 0.76 1.7E-05 48.4 10.8 55 244-298 182-237 (433)
418 PRK10416 signal recognition pa 93.0 4.3 9.3E-05 41.1 15.7 55 243-297 194-255 (318)
419 TIGR01243 CDC48 AAA family ATP 93.0 0.63 1.4E-05 53.2 10.9 54 97-153 173-229 (733)
420 TIGR02782 TrbB_P P-type conjug 93.0 0.38 8.2E-06 48.3 8.0 64 113-185 110-174 (299)
421 KOG1133 Helicase of the DEAD s 92.9 2.3 5E-05 46.2 13.9 102 344-448 629-778 (821)
422 KOG0740 AAA+-type ATPase [Post 92.9 0.6 1.3E-05 48.4 9.4 45 244-288 244-300 (428)
423 PRK07399 DNA polymerase III su 92.8 0.5 1.1E-05 47.7 8.7 57 226-285 106-162 (314)
424 TIGR01241 FtsH_fam ATP-depende 92.7 0.74 1.6E-05 50.0 10.5 55 96-153 49-105 (495)
425 PF04665 Pox_A32: Poxvirus A32 92.7 2 4.3E-05 41.3 12.0 35 138-181 15-49 (241)
426 PRK00080 ruvB Holliday junctio 92.7 0.58 1.3E-05 47.8 9.1 18 137-154 52-69 (328)
427 TIGR03346 chaperone_ClpB ATP-d 92.7 1 2.3E-05 52.2 12.2 18 137-154 195-212 (852)
428 COG1110 Reverse gyrase [DNA re 92.7 0.33 7.2E-06 54.8 7.6 77 343-419 124-211 (1187)
429 TIGR00635 ruvB Holliday juncti 92.6 0.22 4.8E-06 50.3 6.0 17 137-153 31-47 (305)
430 PRK06321 replicative DNA helic 92.6 0.98 2.1E-05 48.4 11.0 111 137-258 227-349 (472)
431 COG1702 PhoH Phosphate starvat 92.6 0.17 3.8E-06 50.2 4.9 57 118-181 125-181 (348)
432 TIGR03880 KaiC_arch_3 KaiC dom 92.6 0.83 1.8E-05 43.7 9.6 52 136-197 16-67 (224)
433 PF02456 Adeno_IVa2: Adenoviru 92.5 0.45 9.7E-06 46.5 7.4 41 139-186 90-130 (369)
434 PRK08451 DNA polymerase III su 92.5 0.24 5.2E-06 53.4 6.3 40 243-283 115-154 (535)
435 TIGR02639 ClpA ATP-dependent C 92.5 1.2 2.7E-05 50.7 12.4 17 137-153 204-220 (731)
436 KOG0737 AAA+-type ATPase [Post 92.5 0.43 9.3E-06 47.9 7.4 56 98-153 88-144 (386)
437 PRK13894 conjugal transfer ATP 92.4 0.43 9.3E-06 48.2 7.6 65 112-185 125-190 (319)
438 PRK14962 DNA polymerase III su 92.4 1.1 2.4E-05 48.0 11.0 18 138-155 38-55 (472)
439 PF00265 TK: Thymidine kinase; 92.2 0.12 2.6E-06 47.2 3.1 35 139-182 4-38 (176)
440 KOG0741 AAA+-type ATPase [Post 92.0 1.2 2.7E-05 46.8 10.2 69 103-182 493-573 (744)
441 PRK14955 DNA polymerase III su 92.0 0.56 1.2E-05 49.3 8.1 18 138-155 40-57 (397)
442 CHL00176 ftsH cell division pr 91.9 1.2 2.6E-05 49.6 10.9 17 137-153 217-233 (638)
443 cd03239 ABC_SMC_head The struc 91.9 0.33 7.1E-06 44.6 5.6 42 244-285 115-157 (178)
444 PRK05595 replicative DNA helic 91.9 0.48 1E-05 50.6 7.7 112 137-259 202-325 (444)
445 TIGR00602 rad24 checkpoint pro 91.9 1.3 2.9E-05 48.9 11.1 16 138-153 112-127 (637)
446 TIGR00959 ffh signal recogniti 91.8 1.3 2.8E-05 46.6 10.6 55 244-298 181-236 (428)
447 PF03237 Terminase_6: Terminas 91.8 3 6.5E-05 43.1 13.6 145 140-301 1-154 (384)
448 TIGR02655 circ_KaiC circadian 91.7 1.2 2.6E-05 48.1 10.5 60 128-197 250-314 (484)
449 PRK04537 ATP-dependent RNA hel 91.7 1.2 2.5E-05 49.3 10.6 71 173-251 257-331 (572)
450 TIGR02688 conserved hypothetic 91.6 0.96 2.1E-05 46.9 9.0 25 131-155 204-228 (449)
451 TIGR00767 rho transcription te 91.6 0.92 2E-05 46.8 8.8 20 133-152 165-184 (415)
452 PRK07413 hypothetical protein; 91.6 18 0.0004 37.2 19.8 53 243-295 123-177 (382)
453 KOG0298 DEAD box-containing he 91.6 0.29 6.3E-06 56.3 5.7 101 343-447 1220-1321(1394)
454 PRK05563 DNA polymerase III su 91.5 0.26 5.6E-06 54.0 5.2 19 138-156 40-58 (559)
455 TIGR02012 tigrfam_recA protein 91.5 0.37 8E-06 48.5 5.9 44 136-188 55-98 (321)
456 PRK09165 replicative DNA helic 91.5 1.2 2.6E-05 48.1 10.3 119 137-258 218-354 (497)
457 KOG0333 U5 snRNP-like RNA heli 91.5 0.86 1.9E-05 47.7 8.4 70 173-250 517-590 (673)
458 TIGR01242 26Sp45 26S proteasom 91.4 1.3 2.7E-05 46.1 10.0 18 136-153 156-173 (364)
459 PRK14950 DNA polymerase III su 91.4 1.4 3E-05 48.9 10.8 18 138-155 40-57 (585)
460 cd01128 rho_factor Transcripti 91.4 0.48 1E-05 46.0 6.4 19 133-151 13-31 (249)
461 PRK06995 flhF flagellar biosyn 91.4 4.2 9.1E-05 43.4 13.8 21 137-157 257-277 (484)
462 TIGR03345 VI_ClpV1 type VI sec 91.3 2 4.4E-05 49.7 12.3 28 126-153 192-225 (852)
463 COG0552 FtsY Signal recognitio 91.3 2.4 5.1E-05 42.4 11.0 55 243-297 219-280 (340)
464 cd00983 recA RecA is a bacter 91.3 0.43 9.3E-06 48.1 6.0 46 136-190 55-100 (325)
465 PRK10865 protein disaggregatio 91.2 1.1 2.3E-05 52.1 9.9 17 137-153 200-216 (857)
466 PRK13851 type IV secretion sys 91.1 0.26 5.7E-06 50.2 4.5 44 132-185 158-201 (344)
467 PRK09087 hypothetical protein; 91.0 0.68 1.5E-05 44.4 7.0 40 247-288 89-129 (226)
468 PRK06647 DNA polymerase III su 91.0 1.2 2.5E-05 48.9 9.6 18 138-155 40-57 (563)
469 PRK14954 DNA polymerase III su 91.0 1.4 3.1E-05 48.7 10.3 18 138-155 40-57 (620)
470 PF01637 Arch_ATPase: Archaeal 91.0 0.89 1.9E-05 43.5 8.0 56 227-286 104-165 (234)
471 COG4962 CpaF Flp pilus assembl 91.0 0.35 7.6E-06 48.3 5.0 60 118-187 154-214 (355)
472 PRK14953 DNA polymerase III su 90.9 0.87 1.9E-05 49.0 8.3 17 139-155 41-57 (486)
473 PHA00012 I assembly protein 90.9 1.4 3.1E-05 43.8 8.9 26 138-163 3-28 (361)
474 TIGR00631 uvrb excinuclease AB 90.8 4.6 0.0001 45.2 14.2 77 173-257 442-522 (655)
475 COG1485 Predicted ATPase [Gene 90.8 2.4 5.1E-05 42.6 10.5 109 137-290 66-175 (367)
476 PRK09376 rho transcription ter 90.8 1.4 3.1E-05 45.3 9.3 27 134-161 167-193 (416)
477 PRK10263 DNA translocase FtsK; 90.8 1.5 3.2E-05 51.6 10.4 41 137-182 1011-1051(1355)
478 PRK08058 DNA polymerase III su 90.8 0.98 2.1E-05 46.1 8.3 41 243-284 108-148 (329)
479 TIGR02237 recomb_radB DNA repa 90.6 1.3 2.9E-05 41.8 8.6 38 136-182 12-49 (209)
480 PRK07773 replicative DNA helic 90.6 1 2.2E-05 52.5 9.3 110 138-258 219-340 (886)
481 COG2804 PulE Type II secretory 90.6 0.49 1.1E-05 49.8 5.9 39 122-161 242-282 (500)
482 TIGR00763 lon ATP-dependent pr 90.6 3.8 8.3E-05 47.1 13.7 17 137-153 348-364 (775)
483 KOG0701 dsRNA-specific nucleas 90.6 0.17 3.8E-06 60.3 2.9 92 346-437 294-398 (1606)
484 KOG2543 Origin recognition com 90.5 7.1 0.00015 39.7 13.5 138 121-289 9-161 (438)
485 PRK07413 hypothetical protein; 90.5 2.6 5.7E-05 43.2 10.9 52 243-294 303-357 (382)
486 PRK12608 transcription termina 90.5 1.8 3.9E-05 44.3 9.7 37 124-161 118-157 (380)
487 PTZ00110 helicase; Provisional 90.5 1.7 3.7E-05 47.8 10.3 71 173-251 377-451 (545)
488 PLN00020 ribulose bisphosphate 90.4 0.33 7.1E-06 49.3 4.3 16 138-153 150-165 (413)
489 COG0466 Lon ATP-dependent Lon 90.3 3.6 7.8E-05 45.3 12.1 65 205-274 382-446 (782)
490 PRK13900 type IV secretion sys 90.3 0.62 1.3E-05 47.4 6.3 29 132-161 156-184 (332)
491 cd01393 recA_like RecA is a b 90.3 0.67 1.4E-05 44.4 6.3 44 136-182 19-62 (226)
492 CHL00095 clpC Clp protease ATP 90.3 1.7 3.7E-05 50.3 10.6 18 137-154 201-218 (821)
493 PF05707 Zot: Zonular occluden 90.2 0.64 1.4E-05 43.4 6.0 43 245-287 79-127 (193)
494 KOG0652 26S proteasome regulat 90.1 3.8 8.3E-05 39.1 10.6 17 137-153 206-222 (424)
495 PRK14948 DNA polymerase III su 90.1 0.6 1.3E-05 51.8 6.4 130 127-283 29-158 (620)
496 COG1198 PriA Primosomal protei 90.0 1.2 2.7E-05 49.7 8.7 82 319-400 219-303 (730)
497 TIGR02868 CydC thiol reductant 89.9 0.82 1.8E-05 50.2 7.4 134 133-283 358-526 (529)
498 PRK09354 recA recombinase A; P 89.9 0.61 1.3E-05 47.4 5.7 87 133-252 57-145 (349)
499 PRK10590 ATP-dependent RNA hel 89.8 2 4.3E-05 46.1 10.1 80 157-250 235-318 (456)
500 COG4371 Predicted membrane pro 89.7 0.76 1.7E-05 42.9 5.7 53 538-593 49-105 (334)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-68 Score=540.27 Aligned_cols=377 Identities=42% Similarity=0.708 Sum_probs=352.1
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEE
Q 007106 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (618)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~li 178 (618)
..|+.+++++++...|+..+|..|||+|.+.||.++.++|++.++.||||||++|++|++.++.+......+..++.+||
T Consensus 91 ~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLV 170 (519)
T KOG0331|consen 91 AAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLV 170 (519)
T ss_pred hhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEE
Confidence 37999999999999999999999999999999999999999999999999999999999999987656666777999999
Q ss_pred EcCcHHHHHHHHHHHHHhCCCCc--EEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhh
Q 007106 179 LAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (618)
Q Consensus 179 l~Pt~~La~q~~~~l~~~~~~~~--~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~ 256 (618)
++||||||.|+.+++.++..... .+|++|+.+...+.+.++++++|+|+||++|.++++...+.++++.++|+||||+
T Consensus 171 L~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADr 250 (519)
T KOG0331|consen 171 LAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADR 250 (519)
T ss_pred EcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHh
Confidence 99999999999999999886554 8999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCcHHHHHHHHHhC-CCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHH
Q 007106 257 MLSVGFAEDVEVILERL-PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335 (618)
Q Consensus 257 ~~~~~~~~~~~~il~~l-~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 335 (618)
|++++|.++++.|+..+ ++..|+|++|||||.+++.++..|+.++..+.+...........+.++...++...|...+.
T Consensus 251 MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~ 330 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLG 330 (519)
T ss_pred hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHH
Confidence 99999999999999999 56668999999999999999999999999998876656666777888888888888999999
Q ss_pred HHHHHhc--cCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCc
Q 007106 336 QLITEHA--KGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (618)
Q Consensus 336 ~ll~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~ 412 (618)
.+|.... ++.++||||++++.|+.|+..|.+. +++..|||+.+|.+|+.+++.|++|++.|||||+++++|||||+|
T Consensus 331 ~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV 410 (519)
T KOG0331|consen 331 KLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDV 410 (519)
T ss_pred HHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccc
Confidence 9988875 5679999999999999999999875 999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCcccCCccccc
Q 007106 413 DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVE 475 (618)
Q Consensus 413 ~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 475 (618)
++||+||+|.++++|+||+||+||++++|.+++|++..++.....+.+.+....++++..+..
T Consensus 411 ~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~ 473 (519)
T KOG0331|consen 411 DLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLE 473 (519)
T ss_pred cEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHH
Confidence 999999999999999999999999999999999999999999999999998888887765433
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.2e-63 Score=470.77 Aligned_cols=367 Identities=35% Similarity=0.584 Sum_probs=337.0
Q ss_pred CCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007106 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (618)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~ 174 (618)
.+...+|.++++.+++.++++..++..||++|+++||.++.++|+|..|+||||||.+|++|+++.++..+ ..+
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p------~~~ 130 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP------KLF 130 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC------CCc
Confidence 34566799999999999999999999999999999999999999999999999999999999999998732 247
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHH-hcCCCCCCccEEEE
Q 007106 175 LCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIK-RNALNLSEVQFVVL 251 (618)
Q Consensus 175 ~~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~-~~~~~l~~~~~vVi 251 (618)
.++|++||||||.|+.+.+..+.. ++++.++.|+.....+...+.+.++|||+||++|.+++. .+.++++.++++|+
T Consensus 131 ~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVl 210 (476)
T KOG0330|consen 131 FALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVL 210 (476)
T ss_pred eEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhh
Confidence 899999999999999999999865 466788999999998888999999999999999999998 46688999999999
Q ss_pred chhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchh
Q 007106 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331 (618)
Q Consensus 252 DEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~ 331 (618)
||||++++++|.+.+..|++.+|..+|++++|||+++.+.++....+.+|..+.. .....+...+.++++......|.
T Consensus 211 DEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~--s~ky~tv~~lkQ~ylfv~~k~K~ 288 (476)
T KOG0330|consen 211 DEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAV--SSKYQTVDHLKQTYLFVPGKDKD 288 (476)
T ss_pred chHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEec--cchhcchHHhhhheEeccccccc
Confidence 9999999999999999999999999999999999999999999988999988865 23344555667777778888899
Q ss_pred HHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCC
Q 007106 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410 (618)
Q Consensus 332 ~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~ 410 (618)
..+..++++. .+..+||||++...++.++-.|... +.+..+||+|++..|.-++++|+++.+.||||||++++|+|+|
T Consensus 289 ~yLV~ll~e~-~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip 367 (476)
T KOG0330|consen 289 TYLVYLLNEL-AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIP 367 (476)
T ss_pred hhHHHHHHhh-cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCC
Confidence 9999999876 4589999999999999999999764 9999999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCcccCC
Q 007106 411 NVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLP 470 (618)
Q Consensus 411 ~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 470 (618)
.+++|||||.|.+..+|+||+||++|+|..|.++.+++..|.+.+..|+..+.+..+.++
T Consensus 368 ~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~ 427 (476)
T KOG0330|consen 368 HVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYK 427 (476)
T ss_pred CceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccC
Confidence 999999999999999999999999999999999999999999999999999998887644
No 3
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=6.5e-60 Score=501.85 Aligned_cols=365 Identities=36% Similarity=0.634 Sum_probs=319.0
Q ss_pred CccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEE
Q 007106 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (618)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil 179 (618)
+|+++++++.+++.|.+.+|..|||+|+++|+.+++++|+|+++|||+|||++|++|+++.+.............++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 57889999999999999999999999999999999999999999999999999999999998653322112234589999
Q ss_pred cCcHHHHHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhh
Q 007106 180 APTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (618)
Q Consensus 180 ~Pt~~La~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~ 257 (618)
+||++||.|+.+.+.++.. .+.+..++++.+...+...+...++|+|+||++|++++....+.++++++|||||||++
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 9999999999999998754 45677888988888777777788999999999999999888888999999999999999
Q ss_pred ccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHHHH
Q 007106 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337 (618)
Q Consensus 258 ~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~l 337 (618)
++++|...+..++..++...|++++|||+++.+..+...++.++..+.+.... .....+.......+...+..++..+
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~~i~~~~~~~~~~~k~~~l~~l 239 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN--TASEQVTQHVHFVDKKRKRELLSQM 239 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc--ccccceeEEEEEcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888877653322 2223344444555555566666666
Q ss_pred HHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEE
Q 007106 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLII 416 (618)
Q Consensus 338 l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI 416 (618)
+... ...++||||++++.++.+++.|.+. +.+..+|++|++++|.++++.|++|+++|||||+++++|||+|++++||
T Consensus 240 ~~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI 318 (456)
T PRK10590 240 IGKG-NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVV 318 (456)
T ss_pred HHcC-CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEE
Confidence 6543 4568999999999999999999654 8899999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCcc
Q 007106 417 HYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFT 467 (618)
Q Consensus 417 ~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 467 (618)
+|++|.++++|+||+||+||.+..|.|++|++..|...++.+++.+...++
T Consensus 319 ~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~ 369 (456)
T PRK10590 319 NYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIP 369 (456)
T ss_pred EeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999999999999999999998887664
No 4
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=5.5e-60 Score=509.25 Aligned_cols=381 Identities=34% Similarity=0.550 Sum_probs=333.5
Q ss_pred CCCCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCC
Q 007106 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172 (618)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~ 172 (618)
..+.+...|+++++++.+++.|.+.+|.+|||+|.++||.+++++|+|+++|||||||++|++|++..+..... .....
T Consensus 124 ~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~-~~~~~ 202 (545)
T PTZ00110 124 NVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL-LRYGD 202 (545)
T ss_pred CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-ccCCC
Confidence 34567788999999999999999999999999999999999999999999999999999999999988765221 22234
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vV 250 (618)
++.+|||+||++||.|+.++++++.. .+++.+++++.+...+...+...++|||+||++|++++......+.++++||
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lV 282 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLV 282 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEE
Confidence 78999999999999999999998764 4677888999888888888888999999999999999998888899999999
Q ss_pred EchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccC-CceEeeccCCcccccCCeEEEEEeccCcc
Q 007106 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATSMYE 329 (618)
Q Consensus 251 iDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (618)
|||||+|++++|..++..++..+++++|++++|||+|+.+..+...++.. +..+.+. .........+.+.........
T Consensus 283 iDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg-~~~l~~~~~i~q~~~~~~~~~ 361 (545)
T PTZ00110 283 LDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVG-SLDLTACHNIKQEVFVVEEHE 361 (545)
T ss_pred eehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEEC-CCccccCCCeeEEEEEEechh
Confidence 99999999999999999999999999999999999999999998888753 5544432 222222334555555556667
Q ss_pred hhHHHHHHHHHhc-cCCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCC
Q 007106 330 KPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGL 407 (618)
Q Consensus 330 k~~~l~~ll~~~~-~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gi 407 (618)
|...+..++.... ...++||||++++.++.+++.|.. .+.+..+|+++++++|+++++.|++|+++|||||+++++||
T Consensus 362 k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGI 441 (545)
T PTZ00110 362 KRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGL 441 (545)
T ss_pred HHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCC
Confidence 7777888887765 577999999999999999999965 48899999999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCcccCCccccc
Q 007106 408 DVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVE 475 (618)
Q Consensus 408 di~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 475 (618)
|+|++++||+||+|.++++|+||+||+||.|++|.|++|+++.+...++.+.+.+....+++|..+..
T Consensus 442 Di~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~ 509 (545)
T PTZ00110 442 DVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEK 509 (545)
T ss_pred CcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888888887765543
No 5
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-60 Score=456.85 Aligned_cols=428 Identities=33% Similarity=0.522 Sum_probs=367.3
Q ss_pred cccCCcccccccccc---CCCCccchhHHhhhhhc--cccccccC-CCCCCCCCCccC-CCCCHHHHHHHHHcCCCCChH
Q 007106 52 KSRFSAGTREFHAIS---RPLDFKSSIAWQHAQSA--VDDYVAYD-DSSKDEGLDISK-LDISQDIVAALARRGISKLFP 124 (618)
Q Consensus 52 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~l~~ 124 (618)
....|+..+.+..+. ..+...+...|...... .++...-+ ...+.+...|++ +...+++++++++.+|.+|+|
T Consensus 166 W~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtP 245 (629)
T KOG0336|consen 166 WAKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTP 245 (629)
T ss_pred cccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCc
Confidence 344444444443332 33444455566654221 22222221 224556666764 578899999999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh-CCCCcEE
Q 007106 125 IQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES-APSLDTI 203 (618)
Q Consensus 125 ~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~-~~~~~~~ 203 (618)
+|.+|||.++++.|++..+.||+|||++||+|.+.++...........++.+|+++||++||.|+.-+++++ +..++.+
T Consensus 246 IqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksv 325 (629)
T KOG0336|consen 246 IQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSV 325 (629)
T ss_pred chhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceE
Confidence 999999999999999999999999999999999988877666666677899999999999999999887764 4678899
Q ss_pred EEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEE
Q 007106 204 CVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 204 ~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
|++++.+...+.+.++.+.+|+++||.+|.++.....+++..+.+||+||||+|++++|.+++++|+-.+++++|+++.|
T Consensus 326 c~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTS 405 (629)
T KOG0336|consen 326 CVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTS 405 (629)
T ss_pred EEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHH
Q 007106 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHA 363 (618)
Q Consensus 284 AT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~ 363 (618)
||||+.++.++..|+.+|..+.+ ...+......+.+..+...+.+|..++..+++......++||||..+..++.|...
T Consensus 406 ATWP~~VrrLa~sY~Kep~~v~v-GsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd 484 (629)
T KOG0336|consen 406 ATWPEGVRRLAQSYLKEPMIVYV-GSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSD 484 (629)
T ss_pred ccCchHHHHHHHHhhhCceEEEe-cccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccch
Confidence 99999999999999999988754 33333444556666688888899999999999999999999999999999999887
Q ss_pred HH-ccCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcce
Q 007106 364 MA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGS 442 (618)
Q Consensus 364 L~-~~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~ 442 (618)
|. +.+....+||.-.|.+|+..++.|++|+++|||||+++++|||+++++||++||+|.+++.|+||+||+||+|++|.
T Consensus 485 ~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~ 564 (629)
T KOG0336|consen 485 FCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGT 564 (629)
T ss_pred hhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcc
Confidence 74 55889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecchhHHHHHHHHHHhCCCcccCCcccccCCCcc
Q 007106 443 AILIYTDQQARQVKSIERDVGCRFTQLPRIAVEGGGDM 480 (618)
Q Consensus 443 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 480 (618)
++.|++..|...++.|.+.|+..-+++|.-+...+..+
T Consensus 565 sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAery 602 (629)
T KOG0336|consen 565 SISFLTRNDWSMAEELIQILERAEQEVPDELVRMAERY 602 (629)
T ss_pred eEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHHHH
Confidence 99999999999999999999988888888766655433
No 6
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-59 Score=497.59 Aligned_cols=364 Identities=43% Similarity=0.737 Sum_probs=330.7
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEE
Q 007106 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (618)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~li 178 (618)
..|+++++++++++.|.+.+|..|||+|.++||.++.++|++++++||||||++|++|+++.+... .. .....+||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~-~~---~~~~~aLi 104 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKS-VE---RKYVSALI 104 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcc-cc---cCCCceEE
Confidence 568899999999999999999999999999999999999999999999999999999999997532 00 11111999
Q ss_pred EcCcHHHHHHHHHHHHHhCC---CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhh
Q 007106 179 LAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (618)
Q Consensus 179 l~Pt~~La~q~~~~l~~~~~---~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH 255 (618)
++||+|||.|+++.+.++.. .+++.+++|+.+...+...++.+++|||+||++|++++....+.+..+.++|+||||
T Consensus 105 l~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD 184 (513)
T COG0513 105 LAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD 184 (513)
T ss_pred ECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh
Confidence 99999999999999998765 577899999999999999898889999999999999999999999999999999999
Q ss_pred hhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcc-hhHHH
Q 007106 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-KPSII 334 (618)
Q Consensus 256 ~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l 334 (618)
+|++++|.+.+..|+..++.+.|++++|||+|+.+..+...++.+|..+.+...........+.++++.+.... |...+
T Consensus 185 rmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L 264 (513)
T COG0513 185 RMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELL 264 (513)
T ss_pred hhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887754444446677788777777665 88999
Q ss_pred HHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCcc
Q 007106 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVD 413 (618)
Q Consensus 335 ~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~ 413 (618)
..+++.... .++||||++++.++.+++.|... +.+..+||++++++|.++++.|++|+++|||||+++++|||||+++
T Consensus 265 ~~ll~~~~~-~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~ 343 (513)
T COG0513 265 LKLLKDEDE-GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVS 343 (513)
T ss_pred HHHHhcCCC-CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccc
Confidence 998887644 37999999999999999999765 9999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecch-hHHHHHHHHHHhCCCcc
Q 007106 414 LIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ-QARQVKSIERDVGCRFT 467 (618)
Q Consensus 414 ~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~ 467 (618)
+|||||+|.+++.|+||+||+||+|..|.+++|+++. +...+..+++.+...++
T Consensus 344 ~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 344 HVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred eeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999986 88899999988876644
No 7
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1e-56 Score=485.33 Aligned_cols=367 Identities=34% Similarity=0.589 Sum_probs=316.9
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhc-CCCCCCeEE
Q 007106 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH-GRGRNPLCL 177 (618)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~-~~~~~~~~l 177 (618)
.+|+++++++.+++.|.+.+|..|||+|+++||.+++++|+|+++|||||||++|++|++..+.+..... .....+++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 4689999999999999999999999999999999999999999999999999999999999887532211 112257899
Q ss_pred EEcCcHHHHHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhc-CCCCCCccEEEEchh
Q 007106 178 VLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDEA 254 (618)
Q Consensus 178 il~Pt~~La~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~-~~~l~~~~~vViDEa 254 (618)
||+||++|+.|+++.+.++.. .+.+..++++.....+...+...++|||+||++|++++... .+.+..+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 999999999999999988765 45678889999888888888888999999999999988765 466888999999999
Q ss_pred hhhccCCcHHHHHHHHHhCCC--CCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhH
Q 007106 255 DQMLSVGFAEDVEVILERLPQ--NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332 (618)
Q Consensus 255 H~~~~~~~~~~~~~il~~l~~--~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 332 (618)
|+|++++|...+..++..++. ..|+++||||++..+..+...++.++..+.+... ......+.+.........+..
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~--~~~~~~i~q~~~~~~~~~k~~ 246 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETE--TITAARVRQRIYFPADEEKQT 246 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccc--cccccceeEEEEecCHHHHHH
Confidence 999999999999999999986 7899999999999999999888888766644222 122233444444455556666
Q ss_pred HHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCC
Q 007106 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN 411 (618)
Q Consensus 333 ~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~ 411 (618)
.+..++... ...++||||++++.++.+++.|.+. +.+..+|++|++.+|+++++.|++|+++|||||+++++|||+|+
T Consensus 247 ~L~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~ 325 (572)
T PRK04537 247 LLLGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDG 325 (572)
T ss_pred HHHHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccC
Confidence 666666543 4679999999999999999999654 88999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCccc
Q 007106 412 VDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQ 468 (618)
Q Consensus 412 ~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 468 (618)
+++||+||+|.++++|+||+||+||.|++|.|++|+++.+...++.+++.++..++.
T Consensus 326 V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~ 382 (572)
T PRK04537 326 VKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPV 382 (572)
T ss_pred CCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCc
Confidence 999999999999999999999999999999999999999988899998888776543
No 8
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-58 Score=423.08 Aligned_cols=366 Identities=34% Similarity=0.593 Sum_probs=328.9
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeE
Q 007106 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~ 176 (618)
....|+++++.+++++.++..+|++|..+|++|++.|++++|++.++..|+|||.+|-+.+++.+.- ..+..++
T Consensus 25 v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~------~~r~tQ~ 98 (400)
T KOG0328|consen 25 VIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI------SVRETQA 98 (400)
T ss_pred cccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc------ccceeeE
Confidence 4457899999999999999999999999999999999999999999999999999998888776532 1224689
Q ss_pred EEEcCcHHHHHHHHHHHHHhCCC--CcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchh
Q 007106 177 LVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (618)
Q Consensus 177 lil~Pt~~La~q~~~~l~~~~~~--~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEa 254 (618)
+|+.||++||.|+.+.+..+... +.+..+.|+.+..+.++.+..+.+++.+||++++++++...+..+.++++|+||+
T Consensus 99 lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEa 178 (400)
T KOG0328|consen 99 LILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEA 178 (400)
T ss_pred EEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccH
Confidence 99999999999999999987654 5567778999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCc-chhHH
Q 007106 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY-EKPSI 333 (618)
Q Consensus 255 H~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~ 333 (618)
|.|++.+|..++..+++.+|+.+|++++|||+|.++.++...|+.+|..+-+.. +......+.++++..+.+ .|...
T Consensus 179 DemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkr--deltlEgIKqf~v~ve~EewKfdt 256 (400)
T KOG0328|consen 179 DEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKR--DELTLEGIKQFFVAVEKEEWKFDT 256 (400)
T ss_pred HHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEec--CCCchhhhhhheeeechhhhhHhH
Confidence 999999999999999999999999999999999999999999999999886532 233334455555555544 48888
Q ss_pred HHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCc
Q 007106 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (618)
Q Consensus 334 l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~ 412 (618)
+.++...+.- .+.+|||+++..++.|.+.+.+. +.+..+||+|++++|++++..|++++.+||++|++.++|+|+|.+
T Consensus 257 LcdLYd~LtI-tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qV 335 (400)
T KOG0328|consen 257 LCDLYDTLTI-TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQV 335 (400)
T ss_pred HHHHhhhheh-heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCccee
Confidence 8888776543 48899999999999999999765 889999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCcccCCc
Q 007106 413 DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPR 471 (618)
Q Consensus 413 ~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 471 (618)
++|||||+|.+.+.|+||+||.||.|++|.++-|+..+|...++.+++.+...+.++|.
T Consensus 336 slviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~ 394 (400)
T KOG0328|consen 336 SLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPM 394 (400)
T ss_pred EEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999998888775
No 9
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-57 Score=445.08 Aligned_cols=380 Identities=34% Similarity=0.544 Sum_probs=344.5
Q ss_pred CCCCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCC
Q 007106 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172 (618)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~ 172 (618)
..+.+...|+.++++..|..++.+..|.++||+|.+++|..+.+++++-+|.||||||.+|+.|++.+++...+.. .+.
T Consensus 217 s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~-~g~ 295 (731)
T KOG0339|consen 217 SPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELK-PGE 295 (731)
T ss_pred CCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhc-CCC
Confidence 3456777899999999999999999999999999999999999999999999999999999999999998755543 467
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vV 250 (618)
+|..||+|||++||.|++.++++++. +++++++|++.+..++...|+.++.||||||++|++++..+.+++.++.++|
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV 375 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLV 375 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEE
Confidence 99999999999999999999999864 6789999999999999999999999999999999999999999999999999
Q ss_pred EchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcch
Q 007106 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330 (618)
Q Consensus 251 iDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k 330 (618)
|||+++|++++|..+++.|...+++++|+|+||||++..+..++..+|.+|..+....- .....+......+..+...|
T Consensus 376 ~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~v-gean~dITQ~V~V~~s~~~K 454 (731)
T KOG0339|consen 376 LDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEV-GEANEDITQTVSVCPSEEKK 454 (731)
T ss_pred EechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeeh-hccccchhheeeeccCcHHH
Confidence 99999999999999999999999999999999999999999999999999999866532 22333334445566667778
Q ss_pred hHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCC
Q 007106 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409 (618)
Q Consensus 331 ~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi 409 (618)
..++...|......+++|||+..+..++.++..|+. .+.|..+|++|.|.+|.+++.+|++..+.|||+|+++.+|+||
T Consensus 455 l~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI 534 (731)
T KOG0339|consen 455 LNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDI 534 (731)
T ss_pred HHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCc
Confidence 888877777777778999999999999999999964 5999999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCcccCCcccc
Q 007106 410 PNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAV 474 (618)
Q Consensus 410 ~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 474 (618)
+++..||+||.-.+++.|.||+||+||+|.+|.+++++++.|....-.|.+.|+-.-+.+|.-+.
T Consensus 535 ~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~ 599 (731)
T KOG0339|consen 535 PSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELM 599 (731)
T ss_pred cccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccccCChHHH
Confidence 99999999999999999999999999999999999999999999888888888877777766443
No 10
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=9.3e-58 Score=450.04 Aligned_cols=368 Identities=37% Similarity=0.597 Sum_probs=329.9
Q ss_pred CCCCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhc---C
Q 007106 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH---G 169 (618)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~---~ 169 (618)
..+.+..+|++.++|.++++.+.+.++..|+|+|+.+||..++++|+|..++||||||++|++|++..|....+.. .
T Consensus 239 ~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en 318 (673)
T KOG0333|consen 239 RLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLEN 318 (673)
T ss_pred CCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhh
Confidence 3457888999999999999999999999999999999999999999999999999999999999999987754321 2
Q ss_pred CCCCCeEEEEcCcHHHHHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcc
Q 007106 170 RGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (618)
Q Consensus 170 ~~~~~~~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~ 247 (618)
...++.++|++||++|++|+.++-.++.. .++++.+.|+....++--.+..+|+|+|+||++|.+.|.+..+.++++.
T Consensus 319 ~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qct 398 (673)
T KOG0333|consen 319 NIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCT 398 (673)
T ss_pred cccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCc
Confidence 34588999999999999999999988765 4567888999998888778889999999999999999999988899999
Q ss_pred EEEEchhhhhccCCcHHHHHHHHHhCCC-------------------------CCcEEEEEecCChHHHHHHHHhccCCc
Q 007106 248 FVVLDEADQMLSVGFAEDVEVILERLPQ-------------------------NRQSMMFSATMPPWIRSLTNKYLKNPL 302 (618)
Q Consensus 248 ~vViDEaH~~~~~~~~~~~~~il~~l~~-------------------------~~~~l~lSAT~~~~~~~~~~~~l~~~~ 302 (618)
+||+|||++|.+++|.+++..++..+|. -+|.++||||+|+.+..++..||.+|.
T Consensus 399 yvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv 478 (673)
T KOG0333|consen 399 YVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPV 478 (673)
T ss_pred eEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCe
Confidence 9999999999999999999999999863 158999999999999999999999999
Q ss_pred eEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHH
Q 007106 303 TVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQ 381 (618)
Q Consensus 303 ~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~ 381 (618)
.+.+- ........+++.......+.+...|..+++.. -..++|||+|+++.|+.|++.|.+. ++|..|||+-++++
T Consensus 479 ~vtig--~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQ 555 (673)
T KOG0333|consen 479 VVTIG--SAGKPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQ 555 (673)
T ss_pred EEEec--cCCCCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHH
Confidence 88763 23344456667777777778888888888876 3459999999999999999999764 99999999999999
Q ss_pred HHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHH
Q 007106 382 RERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERD 461 (618)
Q Consensus 382 r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~ 461 (618)
|+.++..|+++..+|||||+++++|||||+|.+||+||++.++++|+|||||+||+|+.|.++.|+++.|...+..|.+.
T Consensus 556 Re~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~ 635 (673)
T KOG0333|consen 556 RENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQA 635 (673)
T ss_pred HHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877776665
Q ss_pred hC
Q 007106 462 VG 463 (618)
Q Consensus 462 l~ 463 (618)
+-
T Consensus 636 l~ 637 (673)
T KOG0333|consen 636 LR 637 (673)
T ss_pred HH
Confidence 53
No 11
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.3e-57 Score=447.30 Aligned_cols=360 Identities=31% Similarity=0.522 Sum_probs=330.5
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEE
Q 007106 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (618)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~l 177 (618)
...|+...+++..+++++..+|..+|++|+.+|+.++.++|+++.|.||+|||++|++|+++.+.+...... .+..+|
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r--~~~~vl 158 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR--NGTGVL 158 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC--CCeeEE
Confidence 445788999999999999999999999999999999999999999999999999999999999987554432 467899
Q ss_pred EEcCcHHHHHHHHHHHHHhC---CCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcC-CCCCCccEEEEch
Q 007106 178 VLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA-LNLSEVQFVVLDE 253 (618)
Q Consensus 178 il~Pt~~La~q~~~~l~~~~---~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~-~~l~~~~~vViDE 253 (618)
||||||+||.|++.+++++. +.+.+..+.|+.......+.+..+++|+|+||++|++++++.. +.+++++++|+||
T Consensus 159 Ii~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDE 238 (543)
T KOG0342|consen 159 IICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDE 238 (543)
T ss_pred EecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeec
Confidence 99999999999999988764 3677888999999888888888899999999999999998854 5577889999999
Q ss_pred hhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccC-CceEeeccCCcccccCCeEEEEEeccCcchhH
Q 007106 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332 (618)
Q Consensus 254 aH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 332 (618)
||++++.+|...++.|+..++..+|.+++|||.++.++.+....+.. +..+..+..........+++-++......+..
T Consensus 239 ADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ 318 (543)
T KOG0342|consen 239 ADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFS 318 (543)
T ss_pred chhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHH
Confidence 99999999999999999999999999999999999999999887765 78888888888888888898777777777788
Q ss_pred HHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCC
Q 007106 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN 411 (618)
Q Consensus 333 ~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~ 411 (618)
++..+++++....+++|||+|......+++.|... ++|..+||+++|..|..+..+|.+.+.-|||||++++||+|+|+
T Consensus 319 ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~ 398 (543)
T KOG0342|consen 319 LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPD 398 (543)
T ss_pred HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCC
Confidence 88899998877789999999999999999999764 89999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHH
Q 007106 412 VDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459 (618)
Q Consensus 412 ~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~ 459 (618)
|++||+|++|.++++|+||+||++|.|+.|.++++..+.+...+..++
T Consensus 399 V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 399 VDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred ceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 999999999999999999999999999999999999999999888887
No 12
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.8e-56 Score=472.59 Aligned_cols=369 Identities=36% Similarity=0.583 Sum_probs=320.6
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhc-CCCCCCe
Q 007106 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH-GRGRNPL 175 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~-~~~~~~~ 175 (618)
+...|+++++++.+++.|...+|..|+|+|+++||.+++++|+++++|||||||++|++|++..+....... ....+++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 346799999999999999999999999999999999999999999999999999999999999887633221 1123578
Q ss_pred EEEEcCcHHHHHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEch
Q 007106 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (618)
Q Consensus 176 ~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDE 253 (618)
+|||+||++||.|+++.+..+.. ++++.+++++.....+...+...++|||+||++|.+++....+.+.++++|||||
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDE 165 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDE 165 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEec
Confidence 99999999999999999887654 4677888888887777777888899999999999999988888899999999999
Q ss_pred hhhhccCCcHHHHHHHHHhCCC--CCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchh
Q 007106 254 ADQMLSVGFAEDVEVILERLPQ--NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331 (618)
Q Consensus 254 aH~~~~~~~~~~~~~il~~l~~--~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~ 331 (618)
||++++++|...+..++..++. ..+.+++|||++..+..+...++.++..+.+.... .....+...........|.
T Consensus 166 ad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~--~~~~~i~~~~~~~~~~~k~ 243 (423)
T PRK04837 166 ADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQ--KTGHRIKEELFYPSNEEKM 243 (423)
T ss_pred HHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCC--cCCCceeEEEEeCCHHHHH
Confidence 9999999999999999999974 45689999999999999988888888777653222 2223344444455555677
Q ss_pred HHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCC
Q 007106 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410 (618)
Q Consensus 332 ~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~ 410 (618)
..+..++... ...++||||++++.|+.+++.|.. .+.+..+|++|++++|.++++.|++|+++|||||+++++|||+|
T Consensus 244 ~~l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip 322 (423)
T PRK04837 244 RLLQTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIP 322 (423)
T ss_pred HHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCcc
Confidence 7777777654 357999999999999999999965 48999999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCccc
Q 007106 411 NVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQ 468 (618)
Q Consensus 411 ~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 468 (618)
++++||+||+|.++++|+||+||+||.|+.|.|++|+++.+...++.+++.+...++.
T Consensus 323 ~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~ 380 (423)
T PRK04837 323 AVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPV 380 (423)
T ss_pred ccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCC
Confidence 9999999999999999999999999999999999999999999999998888877643
No 13
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.9e-56 Score=478.26 Aligned_cols=380 Identities=28% Similarity=0.496 Sum_probs=325.9
Q ss_pred CCCCCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhc-CC
Q 007106 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH-GR 170 (618)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~-~~ 170 (618)
...+.+...|+++++++.+++.|.+.+|..|||+|.++|+.+++++|+|+++|||||||++|++|++..+....... ..
T Consensus 114 ~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~ 193 (518)
T PLN00206 114 EAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSE 193 (518)
T ss_pred CCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccc
Confidence 34557788899999999999999999999999999999999999999999999999999999999998886532211 12
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHhCCC--CcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccE
Q 007106 171 GRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 171 ~~~~~~lil~Pt~~La~q~~~~l~~~~~~--~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~ 248 (618)
..++++|||+||++||.|+++.++.+... +++.+++++.....+...+..+++|+|+||++|.+++....+.+.++++
T Consensus 194 ~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~ 273 (518)
T PLN00206 194 QRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSV 273 (518)
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeE
Confidence 24689999999999999999998877643 4667788888877777778888999999999999999988888999999
Q ss_pred EEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCc
Q 007106 249 VVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328 (618)
Q Consensus 249 vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 328 (618)
|||||||+|++++|...+..++..++ +.|++++|||+++.+..+...++.++..+...... .....+.+........
T Consensus 274 lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~--~~~~~v~q~~~~~~~~ 350 (518)
T PLN00206 274 LVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPN--RPNKAVKQLAIWVETK 350 (518)
T ss_pred EEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCC--CCCcceeEEEEeccch
Confidence 99999999999999999999998884 68999999999999999999888888777653222 2223344444555555
Q ss_pred chhHHHHHHHHHhcc-CCeEEEEecchhHHHHHHHHHHc--cCCccccccCCCHHHHHHHHHHHhcCCccEEEEcccccc
Q 007106 329 EKPSIIGQLITEHAK-GGKCIVFTQTKRDADRLAHAMAK--SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAAR 405 (618)
Q Consensus 329 ~k~~~l~~ll~~~~~-~~~~lVf~~~~~~~~~l~~~L~~--~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~ 405 (618)
.+...+.+++..... ..++||||+++..++.+++.|.. .+.+..+||+|++++|..+++.|++|+++|||||+++++
T Consensus 351 ~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~r 430 (518)
T PLN00206 351 QKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGR 430 (518)
T ss_pred hHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhc
Confidence 566667777665432 35899999999999999999964 578999999999999999999999999999999999999
Q ss_pred CCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCcccCCcccc
Q 007106 406 GLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAV 474 (618)
Q Consensus 406 Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 474 (618)
|||+|++++||+||+|.++++|+||+||+||.|..|.+++|+++++...+..+.+.+...-+.+|..+.
T Consensus 431 GiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~ 499 (518)
T PLN00206 431 GVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPRELA 499 (518)
T ss_pred cCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 999999999999999999999999999999999999999999999988888888888776666666443
No 14
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.1e-56 Score=485.12 Aligned_cols=361 Identities=40% Similarity=0.662 Sum_probs=318.3
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEE
Q 007106 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (618)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~li 178 (618)
..|+++++++.++++|.+.+|.+|+|+|.++|+.+++++++|+++|||+|||++|++|++..+... ...+++||
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~------~~~~~~LI 79 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE------LKAPQILV 79 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc------cCCCeEEE
Confidence 358899999999999999999999999999999999999999999999999999999999887431 23578999
Q ss_pred EcCcHHHHHHHHHHHHHhC---CCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhh
Q 007106 179 LAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (618)
Q Consensus 179 l~Pt~~La~q~~~~l~~~~---~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH 255 (618)
||||++||.|+++++.++. +.+.++.++++.....+...+...++|||+||++|++++....+.++++++|||||||
T Consensus 80 L~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH
Confidence 9999999999999987754 4678888999998888888888889999999999999999888889999999999999
Q ss_pred hhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHH
Q 007106 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335 (618)
Q Consensus 256 ~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 335 (618)
+|++++|...+..++..++...|+++||||+|+.+..+...++.++..+.+.... .....+.+.+.......|...+.
T Consensus 160 ~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~--~~~~~i~q~~~~v~~~~k~~~L~ 237 (629)
T PRK11634 160 EMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSV--TTRPDISQSYWTVWGMRKNEALV 237 (629)
T ss_pred HHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCcc--ccCCceEEEEEEechhhHHHHHH
Confidence 9999999999999999999999999999999999999999999998877654322 22234445455555556777777
Q ss_pred HHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccE
Q 007106 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDL 414 (618)
Q Consensus 336 ~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~ 414 (618)
.++... ...++||||+++..++.+++.|.+. +.+..+|++|++.+|+++++.|++|+++|||||+++++|||+|++++
T Consensus 238 ~~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~ 316 (629)
T PRK11634 238 RFLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISL 316 (629)
T ss_pred HHHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCE
Confidence 777654 3468999999999999999999764 88999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCccc
Q 007106 415 IIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQ 468 (618)
Q Consensus 415 VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 468 (618)
||+||+|.+++.|+||+||+||.|+.|.|++|+++.+...++.+++.+...++.
T Consensus 317 VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~ 370 (629)
T PRK11634 317 VVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 (629)
T ss_pred EEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcce
Confidence 999999999999999999999999999999999998888888877766655433
No 15
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.5e-56 Score=476.64 Aligned_cols=360 Identities=35% Similarity=0.634 Sum_probs=322.4
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEE
Q 007106 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (618)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~li 178 (618)
.+|+.+++++.+.+.|.+.+|..|+|+|+++|+.+++++|+|+++|||||||++|++|++..+... ...+++||
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~------~~~~~~li 77 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK------RFRVQALV 77 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc------cCCceEEE
Confidence 468899999999999999999999999999999999999999999999999999999999987431 12458999
Q ss_pred EcCcHHHHHHHHHHHHHhC---CCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhh
Q 007106 179 LAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (618)
Q Consensus 179 l~Pt~~La~q~~~~l~~~~---~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH 255 (618)
++||++||.|++++++.+. +.+++..++++.+...+...+...++|+|+||++|.+++....+.+.++++||+||||
T Consensus 78 l~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad 157 (460)
T PRK11776 78 LCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD 157 (460)
T ss_pred EeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH
Confidence 9999999999999988764 3678888999999888888888889999999999999999888889999999999999
Q ss_pred hhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHH
Q 007106 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335 (618)
Q Consensus 256 ~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 335 (618)
++++++|...+..++..+++..|++++|||+++.+..+...++.++..+.+.... ....+.+.........+...+.
T Consensus 158 ~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~---~~~~i~~~~~~~~~~~k~~~l~ 234 (460)
T PRK11776 158 RMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH---DLPAIEQRFYEVSPDERLPALQ 234 (460)
T ss_pred HHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC---CCCCeeEEEEEeCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998888764332 2233555555666666777788
Q ss_pred HHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccE
Q 007106 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDL 414 (618)
Q Consensus 336 ~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~ 414 (618)
.++... ...++||||++++.++.+++.|.+. +.+..+|++|++.+|+.+++.|++|+.+|||||+++++|||+|++++
T Consensus 235 ~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~ 313 (460)
T PRK11776 235 RLLLHH-QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEA 313 (460)
T ss_pred HHHHhc-CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCe
Confidence 877654 3568999999999999999999664 88999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCccc
Q 007106 415 IIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQ 468 (618)
Q Consensus 415 VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 468 (618)
||+|++|.+++.|+||+||+||.|+.|.|++++.+.+...+..+++.++..++.
T Consensus 314 VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~ 367 (460)
T PRK11776 314 VINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNW 367 (460)
T ss_pred EEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCce
Confidence 999999999999999999999999999999999999999999998888765543
No 16
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-58 Score=427.24 Aligned_cols=389 Identities=30% Similarity=0.566 Sum_probs=349.1
Q ss_pred hHHhhhhhc--cccccccCCCCCCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHH
Q 007106 75 IAWQHAQSA--VDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152 (618)
Q Consensus 75 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~ 152 (618)
..|...... .+.....+++.......|+++.+..+++..+.+.+|+.|.|+|+++||.++.++|+|..+..|+|||.+
T Consensus 59 ~dwk~~l~lpp~d~R~~t~DVt~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a 138 (459)
T KOG0326|consen 59 KDWKATLKLPPKDTRYKTEDVTATKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAA 138 (459)
T ss_pred hhhHHhccCCCCCccccccccccccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccc
Confidence 356654332 223344566777888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC--CcEEEEEcCcchhhhhHHhhcCCCEEEEChH
Q 007106 153 FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPG 230 (618)
Q Consensus 153 ~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~--~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~ 230 (618)
|++|+++.+.. ....-+++|++||++||-|+.+.++++... +.+.+.+|+.+..+.+-.+....+++|+||+
T Consensus 139 ~~IP~Lekid~------~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPG 212 (459)
T KOG0326|consen 139 YCIPVLEKIDP------KKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPG 212 (459)
T ss_pred eechhhhhcCc------cccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCCh
Confidence 99999998743 223568999999999999988888776653 5677788999988888888899999999999
Q ss_pred HHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCC
Q 007106 231 RVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310 (618)
Q Consensus 231 ~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~ 310 (618)
+++++.+...-.+++..++|+||||.+++..|...++.++..+|+++|++++|||+|-.+..+...++.+|..+++.+
T Consensus 213 RIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~-- 290 (459)
T KOG0326|consen 213 RILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLME-- 290 (459)
T ss_pred hHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhh--
Confidence 999999998888999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred cccccCCeEEEEEeccCcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHH
Q 007106 311 DQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAF 389 (618)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f 389 (618)
+.....+.+++..+.+..|...+..+...+.- .+.+|||++.+.++.+++.+.+. +.|..+|+.|-++.|.++++.|
T Consensus 291 -eLtl~GvtQyYafV~e~qKvhCLntLfskLqI-NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdF 368 (459)
T KOG0326|consen 291 -ELTLKGVTQYYAFVEERQKVHCLNTLFSKLQI-NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDF 368 (459)
T ss_pred -hhhhcchhhheeeechhhhhhhHHHHHHHhcc-cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhh
Confidence 33445677777778888898888888777643 47899999999999999999764 9999999999999999999999
Q ss_pred hcCCccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCcccC
Q 007106 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469 (618)
Q Consensus 390 ~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 469 (618)
++|.|+.||||+.+.+|||++++++||+||.|.+.+.|+||+||.||.|..|.++.+++.+|...+..+++.|+.+++++
T Consensus 369 r~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pi 448 (459)
T KOG0326|consen 369 RNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPI 448 (459)
T ss_pred hccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cccc
Q 007106 470 PRIA 473 (618)
Q Consensus 470 ~~~~ 473 (618)
|...
T Consensus 449 p~~i 452 (459)
T KOG0326|consen 449 PSNI 452 (459)
T ss_pred CCcC
Confidence 8643
No 17
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.1e-56 Score=431.99 Aligned_cols=357 Identities=34% Similarity=0.596 Sum_probs=318.0
Q ss_pred CccCCC--CCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEE
Q 007106 100 DISKLD--ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (618)
Q Consensus 100 ~~~~~~--l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~l 177 (618)
.|+.+. +++++++++...+|..+||+|..+||.+++++|+++.++||||||++|++|++..+.+.....+.. ..-+|
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~-~vgal 83 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPG-QVGAL 83 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCcc-ceeEE
Confidence 455554 559999999999999999999999999999999999999999999999999999997755544332 35799
Q ss_pred EEcCcHHHHHHHHHHHHH---hCCCCcEEEEEcCcchhhhhHHhhc-CCCEEEEChHHHHHHHHhcC--CCCCCccEEEE
Q 007106 178 VLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQMRALDY-GVDAVVGTPGRVIDLIKRNA--LNLSEVQFVVL 251 (618)
Q Consensus 178 il~Pt~~La~q~~~~l~~---~~~~~~~~~~~g~~~~~~~~~~l~~-~~~Ilv~T~~~l~~~l~~~~--~~l~~~~~vVi 251 (618)
||+||+||+.|+.+.+.. .++++.+.++.|+.+.......+.+ +++|+|+||++|.+++.... ++++++.++|+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 999999999999887654 4567889999999888888777664 58899999999999998744 45669999999
Q ss_pred chhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchh
Q 007106 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331 (618)
Q Consensus 252 DEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~ 331 (618)
||||++++++|...+..|+..+|+.+++=++|||....+..+....+.+|..+.+........+.....++..+...+|.
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~ 243 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKL 243 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHH
Confidence 99999999999999999999999999999999999999999999999999999876666555667788888899999999
Q ss_pred HHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHc---cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCC
Q 007106 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK---SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLD 408 (618)
Q Consensus 332 ~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~---~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gid 408 (618)
..+.+++.+. ...++|||++|...++.++..+.. ...+..+||.|.+..|..+++.|.+-...+|+|||++++|||
T Consensus 244 ~~lv~~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlD 322 (567)
T KOG0345|consen 244 SQLVHLLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLD 322 (567)
T ss_pred HHHHHHHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCC
Confidence 9999998874 567999999999999999988854 467889999999999999999999988899999999999999
Q ss_pred CCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHH
Q 007106 409 VPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458 (618)
Q Consensus 409 i~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 458 (618)
||++++||+||+|.++..|+||+||++|.|+.|.+++|+.+.+..+++-+
T Consensus 323 ip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl 372 (567)
T KOG0345|consen 323 IPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFL 372 (567)
T ss_pred CCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHH
Confidence 99999999999999999999999999999999999999999776666544
No 18
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-56 Score=419.64 Aligned_cols=371 Identities=34% Similarity=0.535 Sum_probs=331.1
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeE
Q 007106 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~ 176 (618)
...+|+.+++++++.+.|+..++..|||+|..|||.|+.++|+|-+|.||||||++|.+|+++.+.++ ..+..+
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed------P~giFa 78 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED------PYGIFA 78 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC------CCcceE
Confidence 45679999999999999999999999999999999999999999999999999999999999998652 236789
Q ss_pred EEEcCcHHHHHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhc----CCCCCCccEEE
Q 007106 177 LVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN----ALNLSEVQFVV 250 (618)
Q Consensus 177 lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~----~~~l~~~~~vV 250 (618)
+|++||++||.|+.+.|..+.. .+++.+++|+...-.+...+...++|||+||++|.+++... .+.+++++++|
T Consensus 79 lvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflV 158 (442)
T KOG0340|consen 79 LVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLV 158 (442)
T ss_pred EEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEE
Confidence 9999999999999999987654 56788899999988888888899999999999999888775 34588999999
Q ss_pred EchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcch
Q 007106 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330 (618)
Q Consensus 251 iDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k 330 (618)
+|||+++++..|.+.++.+.+.+|..+|.++||||+.+.+..+.......+..+.........+.....+.++.++.+.+
T Consensus 159 lDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vk 238 (442)
T KOG0340|consen 159 LDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVK 238 (442)
T ss_pred ecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhh
Confidence 99999999999999999999999999999999999999888876655554433333333444555666777788888888
Q ss_pred hHHHHHHHHHhcc--CCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCC
Q 007106 331 PSIIGQLITEHAK--GGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGL 407 (618)
Q Consensus 331 ~~~l~~ll~~~~~--~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gi 407 (618)
...+..++..... ...++||+++..+|+.|+..|+.. +.+..+|+.|+|.+|-..+.+|+++..+|||||+++++|+
T Consensus 239 daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGL 318 (442)
T KOG0340|consen 239 DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGL 318 (442)
T ss_pred HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCC
Confidence 8888888887655 679999999999999999999764 8899999999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCcccCCccc
Q 007106 408 DVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIA 473 (618)
Q Consensus 408 di~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 473 (618)
|||.++.|||+|.|+++.+|+||+||+.|+|+.|.++.++++.|.+.+..+++..++.+.+++...
T Consensus 319 DIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~~ 384 (442)
T KOG0340|consen 319 DIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKVQ 384 (442)
T ss_pred CCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999988876543
No 19
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=5e-54 Score=456.28 Aligned_cols=363 Identities=34% Similarity=0.607 Sum_probs=314.5
Q ss_pred CccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEE
Q 007106 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (618)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil 179 (618)
+|+++++++.+++.|...+|.+|+++|.++|+.++.++|+|+++|||+|||++|++|++..+...... .....++||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~--~~~~~~~lil 79 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR--KSGPPRILIL 79 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc--CCCCceEEEE
Confidence 58899999999999999999999999999999999999999999999999999999999988753221 1235689999
Q ss_pred cCcHHHHHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhh
Q 007106 180 APTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (618)
Q Consensus 180 ~Pt~~La~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~ 257 (618)
+||++|+.|+++.+..+.. ++.+..++++.....+...+...++|||+||++|++++....+.+.++++|||||||++
T Consensus 80 ~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~ 159 (434)
T PRK11192 80 TPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRM 159 (434)
T ss_pred CCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHH
Confidence 9999999999999888754 46788889998888877777788999999999999999988888999999999999999
Q ss_pred ccCCcHHHHHHHHHhCCCCCcEEEEEecCCh-HHHHHHHHhccCCceEeeccCCcccccCCeEEEEEec-cCcchhHHHH
Q 007106 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPP-WIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT-SMYEKPSIIG 335 (618)
Q Consensus 258 ~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~-~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~ 335 (618)
++++|...+..+...++...|+++||||++. .+..+...++.++..+..... ......+.++.... ....+..++.
T Consensus 160 l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~i~~~~~~~~~~~~k~~~l~ 237 (434)
T PRK11192 160 LDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPS--RRERKKIHQWYYRADDLEHKTALLC 237 (434)
T ss_pred hCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCC--cccccCceEEEEEeCCHHHHHHHHH
Confidence 9999999999999999989999999999985 577777778878877755322 22223333333333 3455667777
Q ss_pred HHHHHhccCCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccE
Q 007106 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDL 414 (618)
Q Consensus 336 ~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~ 414 (618)
.+++.. ...++||||++++.++.+++.|.+ .+.+..+|++|++.+|..+++.|++|+++|||||+++++|||+|++++
T Consensus 238 ~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~ 316 (434)
T PRK11192 238 HLLKQP-EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSH 316 (434)
T ss_pred HHHhcC-CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCE
Confidence 776542 456999999999999999999975 488999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCcc
Q 007106 415 IIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFT 467 (618)
Q Consensus 415 VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 467 (618)
||+|++|.+++.|+||+||+||.|.+|.++++++..|...+..+++.+...+.
T Consensus 317 VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~ 369 (434)
T PRK11192 317 VINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLK 369 (434)
T ss_pred EEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999887766543
No 20
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2e-55 Score=435.62 Aligned_cols=367 Identities=31% Similarity=0.519 Sum_probs=329.7
Q ss_pred cCCCCCCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcC
Q 007106 90 YDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169 (618)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~ 169 (618)
+.+........|.+++++...++.|+...|..+|.+|+.+||..++++|+|-.+.||||||++|++|+++.+.. .+|.
T Consensus 60 y~ei~~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r--~kWs 137 (758)
T KOG0343|consen 60 YAEIDSTTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYR--LKWS 137 (758)
T ss_pred HHHhhhhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHH--cCCC
Confidence 33344455667999999999999999999999999999999999999999999999999999999999999976 4455
Q ss_pred CCCCCeEEEEcCcHHHHHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhc-CCCCCCc
Q 007106 170 RGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEV 246 (618)
Q Consensus 170 ~~~~~~~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~-~~~l~~~ 246 (618)
...+.-+|||.|||+||.|+++.+.+... .+...++.|+.....+...+ ..++|+||||++|+.++... .++..++
T Consensus 138 ~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~l 216 (758)
T KOG0343|consen 138 PTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNL 216 (758)
T ss_pred CCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcc
Confidence 56688899999999999999999998754 45677788888866655544 45899999999999998775 4678899
Q ss_pred cEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEecc
Q 007106 247 QFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326 (618)
Q Consensus 247 ~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 326 (618)
.++|+||||+|++++|...+..|+..+|+.+|+++||||.+..+..++...+.+|..+.+.......++....++++.+.
T Consensus 217 QmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~ 296 (758)
T KOG0343|consen 217 QMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVP 296 (758)
T ss_pred eEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999887777788888899999999
Q ss_pred CcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHc---cCCccccccCCCHHHHHHHHHHHhcCCccEEEEcccc
Q 007106 327 MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK---SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403 (618)
Q Consensus 327 ~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~---~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~ 403 (618)
...|...|...|+.+.+ .++|||+.+.+++..+++.+.+ .+++..+||.|+|..|.++..+|...+..||+||+++
T Consensus 297 l~~Ki~~L~sFI~shlk-~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~ 375 (758)
T KOG0343|consen 297 LEDKIDMLWSFIKSHLK-KKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVA 375 (758)
T ss_pred hhhHHHHHHHHHHhccc-cceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhh
Confidence 99999999999998854 5899999999999999998865 4788999999999999999999999999999999999
Q ss_pred ccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhH-HHHHHHHH
Q 007106 404 ARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA-RQVKSIER 460 (618)
Q Consensus 404 ~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~-~~~~~l~~ 460 (618)
++|+|+|.+++||.+|+|.++++|+||+||+.|....|.+++++++.+. ..+..|++
T Consensus 376 aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~ 433 (758)
T KOG0343|consen 376 ARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQK 433 (758)
T ss_pred hccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999884 44444443
No 21
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-55 Score=433.43 Aligned_cols=360 Identities=34% Similarity=0.551 Sum_probs=316.3
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEE
Q 007106 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (618)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~l 177 (618)
..+|.++.|+..+++++...||..|||+|..+||..+-++|++.+|.||||||.+|++|+|..++-.+.. -...++|
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~---~~~TRVL 256 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK---VAATRVL 256 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc---CcceeEE
Confidence 3468899999999999999999999999999999999999999999999999999999999998764333 2246899
Q ss_pred EEcCcHHHHHHHHHHHHHhC--CCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhc-CCCCCCccEEEEchh
Q 007106 178 VLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDEA 254 (618)
Q Consensus 178 il~Pt~~La~q~~~~l~~~~--~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~-~~~l~~~~~vViDEa 254 (618)
|+|||++|+.|++...+++. ..+.+.+..|+-+...+...|+..++|||+||++|.+++.+. .+++.++.++|+|||
T Consensus 257 VL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEA 336 (691)
T KOG0338|consen 257 VLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEA 336 (691)
T ss_pred EEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechH
Confidence 99999999999999888754 357788889999999999999999999999999999999774 578999999999999
Q ss_pred hhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEE-eccCcchhHH
Q 007106 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI-ATSMYEKPSI 333 (618)
Q Consensus 255 H~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~ 333 (618)
|+|++.+|..++.+|+..+++++|.++||||++..+..++...|..|..+.+.+..........+...+ +.....+..+
T Consensus 337 DRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~ 416 (691)
T KOG0338|consen 337 DRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAM 416 (691)
T ss_pred HHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHH
Confidence 999999999999999999999999999999999999999999999999987644433322222222222 2334456667
Q ss_pred HHHHHHHhccCCeEEEEecchhHHHHHHHHHH-ccCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCc
Q 007106 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (618)
Q Consensus 334 l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~ 412 (618)
+..++.... ..+++||+.+++.|..+.-.|- -.+++.-+||.++|.+|-+.++.|++.+++|||||+++++||||+.+
T Consensus 417 l~~l~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV 495 (691)
T KOG0338|consen 417 LASLITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGV 495 (691)
T ss_pred HHHHHHHhc-ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccce
Confidence 777776654 4689999999999999988774 35889999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHH
Q 007106 413 DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERD 461 (618)
Q Consensus 413 ~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~ 461 (618)
.+||||++|.+.+.|+||+||+.|+|+.|.+++|+.+.+...++.+.+.
T Consensus 496 ~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 496 QTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred eEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999988887665
No 22
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-55 Score=441.08 Aligned_cols=374 Identities=36% Similarity=0.613 Sum_probs=326.9
Q ss_pred CccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcC----CCCCCe
Q 007106 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG----RGRNPL 175 (618)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~----~~~~~~ 175 (618)
.|+...+.+.+..+++..++..|||+|+.+||.+..+++++++|+||||||.+|++|++..+++...... ....+.
T Consensus 75 ~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~ 154 (482)
T KOG0335|consen 75 TFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPR 154 (482)
T ss_pred cccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCc
Confidence 6777788999999999999999999999999999999999999999999999999999999987544321 112589
Q ss_pred EEEEcCcHHHHHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEch
Q 007106 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (618)
Q Consensus 176 ~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDE 253 (618)
+||++||++|+.|++++.+++.. .++++.++++.+...+.+.+.++|+|+|+||++|.++++...+.+.+++++|+||
T Consensus 155 ~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDE 234 (482)
T KOG0335|consen 155 ALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDE 234 (482)
T ss_pred eEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecc
Confidence 99999999999999999998753 5678889999999999999999999999999999999999999999999999999
Q ss_pred hhhhcc-CCcHHHHHHHHHhCCC----CCcEEEEEecCChHHHHHHHHhccCC-ceEeeccCCcccccCCeEEEEEeccC
Q 007106 254 ADQMLS-VGFAEDVEVILERLPQ----NRQSMMFSATMPPWIRSLTNKYLKNP-LTVDLVGDSDQKLADGISLYSIATSM 327 (618)
Q Consensus 254 aH~~~~-~~~~~~~~~il~~l~~----~~~~l~lSAT~~~~~~~~~~~~l~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~ 327 (618)
||+|++ ++|.+.+++|+..... +.|.++||||.|+.+..++..++.+. ..+.+ .. .......+.+....+..
T Consensus 235 ADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV-~r-vg~~~~ni~q~i~~V~~ 312 (482)
T KOG0335|consen 235 ADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAV-GR-VGSTSENITQKILFVNE 312 (482)
T ss_pred hHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEE-ee-eccccccceeEeeeecc
Confidence 999999 9999999999988754 78999999999999999999988873 33332 22 22233444444455555
Q ss_pred cchhHHHHHHHHHhc---cC-----CeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEE
Q 007106 328 YEKPSIIGQLITEHA---KG-----GKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILI 398 (618)
Q Consensus 328 ~~k~~~l~~ll~~~~---~~-----~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLV 398 (618)
.+|...+.+++.... .. ++++|||.+++.+..++..|... +++..+|+..++.+|.+.++.|++|++.|||
T Consensus 313 ~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlV 392 (482)
T KOG0335|consen 313 MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLV 392 (482)
T ss_pred hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEE
Confidence 566666666666443 23 38999999999999999999764 9999999999999999999999999999999
Q ss_pred EccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCcccCCccccc
Q 007106 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVE 475 (618)
Q Consensus 399 aT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 475 (618)
||+++++|+|||+|+|||+||+|.+..+|+|||||+||.|+.|.++.|++..+....+.|.+.+...-+.+|.|+.+
T Consensus 393 aT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~vP~wl~~ 469 (482)
T KOG0335|consen 393 ATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQEVPQWLSE 469 (482)
T ss_pred EehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhcccCcHHHHh
Confidence 99999999999999999999999999999999999999999999999999888888999999888888888887765
No 23
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.6e-53 Score=451.90 Aligned_cols=367 Identities=32% Similarity=0.568 Sum_probs=314.2
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcC-CCCCCe
Q 007106 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG-RGRNPL 175 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~-~~~~~~ 175 (618)
....|.++.+++.++++|.+.+|..|+++|.++|+.+++++|+|++++||||||++|++|++..+.+...... ....++
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 3456888999999999999999999999999999999999999999999999999999999999876322111 111468
Q ss_pred EEEEcCcHHHHHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhh-cCCCEEEEChHHHHHHHHhcCCCCCCccEEEEc
Q 007106 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (618)
Q Consensus 176 ~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~-~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViD 252 (618)
+|||+||++|+.|+++.++.+.. ++.+..++++.....+.+.+. ..++|||+||++|+.++..+...++++++||||
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViD 244 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLD 244 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEec
Confidence 99999999999999999988764 456777888877666666554 458999999999999888888889999999999
Q ss_pred hhhhhccCCcHHHHHHHHHhCCC--CCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcch
Q 007106 253 EADQMLSVGFAEDVEVILERLPQ--NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330 (618)
Q Consensus 253 EaH~~~~~~~~~~~~~il~~l~~--~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k 330 (618)
|+|++++++|...+..++..++. +.|++++|||++..+..+...++.++..+.+.... .....+..........++
T Consensus 245 Eah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~k 322 (475)
T PRK01297 245 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPEN--VASDTVEQHVYAVAGSDK 322 (475)
T ss_pred hHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCc--CCCCcccEEEEEecchhH
Confidence 99999999999999999998864 57999999999999999999998888776553322 122233344444455567
Q ss_pred hHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCC
Q 007106 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409 (618)
Q Consensus 331 ~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi 409 (618)
...+..++... ...++||||++++.++.+++.|.+. +.+..+|+++++++|.++++.|++|+++|||||+++++||||
T Consensus 323 ~~~l~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi 401 (475)
T PRK01297 323 YKLLYNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHI 401 (475)
T ss_pred HHHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcc
Confidence 77777777653 3469999999999999999999654 888999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCc
Q 007106 410 PNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRF 466 (618)
Q Consensus 410 ~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 466 (618)
+++++||++++|.++.+|+||+||+||.|++|.+++|+.++|...+..+++.++..+
T Consensus 402 ~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~ 458 (475)
T PRK01297 402 DGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKI 458 (475)
T ss_pred cCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999998888899999888765
No 24
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=5.1e-56 Score=422.05 Aligned_cols=381 Identities=31% Similarity=0.547 Sum_probs=325.8
Q ss_pred CCCCCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcC--
Q 007106 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG-- 169 (618)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~-- 169 (618)
+..+.+..+|.++.+|..+++.|+++++.+|||+|.+-+|.+++++|+|-++-||||||++|.+|++...+...-..+
T Consensus 163 d~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~ 242 (610)
T KOG0341|consen 163 DDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFA 242 (610)
T ss_pred CCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccc
Confidence 445567788999999999999999999999999999999999999999999999999999999999887776544433
Q ss_pred CCCCCeEEEEcCcHHHHHHHHHHHHHhC--------CCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCC
Q 007106 170 RGRNPLCLVLAPTRELAKQVEKEFHESA--------PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL 241 (618)
Q Consensus 170 ~~~~~~~lil~Pt~~La~q~~~~l~~~~--------~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~ 241 (618)
++.++..||+||+++||.|.++.+..++ |.++..++.|+.+...+.+.++.+.+|+|+||++|.++|..+.+
T Consensus 243 ~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~ 322 (610)
T KOG0341|consen 243 RGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIM 322 (610)
T ss_pred cCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhc
Confidence 4568999999999999999998876653 56778888999999999999999999999999999999999999
Q ss_pred CCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEE
Q 007106 242 NLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY 321 (618)
Q Consensus 242 ~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~ 321 (618)
++.-+.++++||||+|.+++|...++.++..++..+|+++||||+|..+..++...+..|..+++-......+.. +. .
T Consensus 323 sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldV-iQ-e 400 (610)
T KOG0341|consen 323 SLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDV-IQ-E 400 (610)
T ss_pred cHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhH-HH-H
Confidence 999999999999999999999999999999999999999999999999999999999999998763322222111 10 0
Q ss_pred EEeccCcchhHHHHHHHHHhcc-CCeEEEEecchhHHHHHHHHH-HccCCccccccCCCHHHHHHHHHHHhcCCccEEEE
Q 007106 322 SIATSMYEKPSIIGQLITEHAK-GGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399 (618)
Q Consensus 322 ~~~~~~~~k~~~l~~ll~~~~~-~~~~lVf~~~~~~~~~l~~~L-~~~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVa 399 (618)
...+..+.| +..+++++.+ .-++||||..+..++.+.++| -+.+.+..+||+..+++|...++.|+.|+.+||||
T Consensus 401 vEyVkqEaK---iVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVA 477 (610)
T KOG0341|consen 401 VEYVKQEAK---IVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVA 477 (610)
T ss_pred HHHHHhhhh---hhhHHHHhccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEE
Confidence 011122222 3344555443 458999999999999999988 46688999999999999999999999999999999
Q ss_pred ccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecch-hHHHHHHHHHHhCCCcccCCcccccCC
Q 007106 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ-QARQVKSIERDVGCRFTQLPRIAVEGG 477 (618)
Q Consensus 400 T~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~ 477 (618)
|++++.|+|+|++.||||||+|..+++|+|||||+||.|++|.+.+|++.. +...+..+...|....+.+|..+.+-.
T Consensus 478 TDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L~ 556 (610)
T KOG0341|consen 478 TDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAELA 556 (610)
T ss_pred ecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCHHHHHhC
Confidence 999999999999999999999999999999999999999999999999865 445566777777777777776655433
No 25
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.7e-53 Score=407.99 Aligned_cols=364 Identities=28% Similarity=0.455 Sum_probs=324.9
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEE
Q 007106 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (618)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~li 178 (618)
..|+++++++.+++++.+.+|..||-+|+.+||.+++++|++..|.||||||.+|++|+++.+++.........++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 57999999999999999999999999999999999999999999999999999999999999998776655566889999
Q ss_pred EcCcHHHHHHHHHHHHHhC---C-CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcC-CCCCCccEEEEch
Q 007106 179 LAPTRELAKQVEKEFHESA---P-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA-LNLSEVQFVVLDE 253 (618)
Q Consensus 179 l~Pt~~La~q~~~~l~~~~---~-~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~-~~l~~~~~vViDE 253 (618)
++||++||+|++..+.++. + .++++-+....+.......+...++|||+||..|+.++.... ..+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 9999999999999887653 2 455555665666666667777889999999999999998876 5678899999999
Q ss_pred hhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHH
Q 007106 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333 (618)
Q Consensus 254 aH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 333 (618)
||.++..++.+.+..+...+|+..|.++||||+.+++..+...++.+|..+.+.+... .......++.+.++..+|..+
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el-~~~dqL~Qy~v~cse~DKfll 257 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGEL-PNPDQLTQYQVKCSEEDKFLL 257 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccC-CCcccceEEEEEeccchhHHH
Confidence 9999999999999999999999999999999999999999999999999988765443 366788999999999999999
Q ss_pred HHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEcc-----------
Q 007106 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATD----------- 401 (618)
Q Consensus 334 l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~----------- 401 (618)
+..+++...-.+++|||+|+++.|..|.-.|.+. ++..++.+.++...|..|+++|+.|-++|+||||
T Consensus 258 lyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee 337 (569)
T KOG0346|consen 258 LYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEE 337 (569)
T ss_pred HHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcc
Confidence 9888887666789999999999999999888764 8888999999999999999999999999999999
Q ss_pred ------------------------ccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHH
Q 007106 402 ------------------------VAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457 (618)
Q Consensus 402 ------------------------~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~ 457 (618)
-.++|||+.++..|||||+|.++..|+||+||++|++++|.++.|+.+.+..-...
T Consensus 338 ~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~ 417 (569)
T KOG0346|consen 338 VKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKES 417 (569)
T ss_pred ccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhH
Confidence 14689999999999999999999999999999999999999999999987764455
Q ss_pred HHHHhC
Q 007106 458 IERDVG 463 (618)
Q Consensus 458 l~~~l~ 463 (618)
++..+.
T Consensus 418 le~~~~ 423 (569)
T KOG0346|consen 418 LESILK 423 (569)
T ss_pred HHHHHh
Confidence 544443
No 26
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-53 Score=419.42 Aligned_cols=365 Identities=30% Similarity=0.514 Sum_probs=307.0
Q ss_pred CCCCccCCCCCHHHHHHHHH-cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCe
Q 007106 97 EGLDISKLDISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~ 175 (618)
....|..+++++.+...|+. +++..||.+|+++||.+++++|++|.++||||||++|++|+++.+.+...+..+..++.
T Consensus 134 ts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ 213 (708)
T KOG0348|consen 134 TSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPY 213 (708)
T ss_pred ccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCce
Confidence 44568899999999999965 69999999999999999999999999999999999999999999999888777888999
Q ss_pred EEEEcCcHHHHHHHHHHHHHhCCC---CcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhc-CCCCCCccEEEE
Q 007106 176 CLVLAPTRELAKQVEKEFHESAPS---LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVL 251 (618)
Q Consensus 176 ~lil~Pt~~La~q~~~~l~~~~~~---~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~-~~~l~~~~~vVi 251 (618)
+|||+||||||.|+++.++++... +-...+.|+.....+...++++++|+|+||++|++++++. .+.+.++.+||+
T Consensus 214 ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVl 293 (708)
T KOG0348|consen 214 ALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVL 293 (708)
T ss_pred EEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEe
Confidence 999999999999999999998643 3445678888888888889999999999999999999874 467888999999
Q ss_pred chhhhhccCCcHHHHHHHHHhCC-------------CCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcc------
Q 007106 252 DEADQMLSVGFAEDVEVILERLP-------------QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ------ 312 (618)
Q Consensus 252 DEaH~~~~~~~~~~~~~il~~l~-------------~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~------ 312 (618)
||+|++++.+|...+..|++.+. ...|.+++|||+.+.+..+....+.||..|.+......
T Consensus 294 DEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~ 373 (708)
T KOG0348|consen 294 DEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDK 373 (708)
T ss_pred cchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchh
Confidence 99999999999999999998872 13578999999999999999999999988872211111
Q ss_pred -----------------cccCCeEEEEEeccCcchhHHHHHHHHHh---ccCCeEEEEecchhHHHHHHHHHHc------
Q 007106 313 -----------------KLADGISLYSIATSMYEKPSIIGQLITEH---AKGGKCIVFTQTKRDADRLAHAMAK------ 366 (618)
Q Consensus 313 -----------------~~~~~~~~~~~~~~~~~k~~~l~~ll~~~---~~~~~~lVf~~~~~~~~~l~~~L~~------ 366 (618)
.++....+.+..+...-+...|..+|.+. ....++|||+.+.+.++.-++.|..
T Consensus 374 a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~ 453 (708)
T KOG0348|consen 374 AVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHL 453 (708)
T ss_pred hhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhccc
Confidence 01111222333344444444444444433 2356899999999999998887754
Q ss_pred -----------------cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCCCChhHHHH
Q 007106 367 -----------------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVH 429 (618)
Q Consensus 367 -----------------~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Q 429 (618)
..++..+||.|+|++|..++..|...+..||+|||++++|||+|++++||.||+|.++++|+|
T Consensus 454 e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylH 533 (708)
T KOG0348|consen 454 EGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLH 533 (708)
T ss_pred ccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHH
Confidence 123566899999999999999999998889999999999999999999999999999999999
Q ss_pred hhhccCCCCCcceEEEEecchhHHHHHHHHHH
Q 007106 430 RTGRTGRAGKKGSAILIYTDQQARQVKSIERD 461 (618)
Q Consensus 430 r~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~ 461 (618)
|+||+.|+|.+|.+++|..+.+.+++..+...
T Consensus 534 RvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 534 RVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred HhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 99999999999999999999998877766543
No 27
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.3e-51 Score=432.95 Aligned_cols=363 Identities=35% Similarity=0.579 Sum_probs=308.7
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEE
Q 007106 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (618)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~li 178 (618)
..|+++++++.+.+.|.+.++..|+|+|.++|+.+++++|+++++|||||||++|++|++..+.. .....++||
T Consensus 28 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~------~~~~~~~li 101 (401)
T PTZ00424 28 DSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY------DLNACQALI 101 (401)
T ss_pred CCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC------CCCCceEEE
Confidence 46888999999999999999999999999999999999999999999999999999999987632 123568999
Q ss_pred EcCcHHHHHHHHHHHHHhCCC--CcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhh
Q 007106 179 LAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (618)
Q Consensus 179 l~Pt~~La~q~~~~l~~~~~~--~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~ 256 (618)
++||++|+.|+.+.+..+... +.+..+.++.....+...+...++|+|+||++|.+.+....+.++++++|||||+|+
T Consensus 102 l~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~ 181 (401)
T PTZ00424 102 LAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE 181 (401)
T ss_pred ECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH
Confidence 999999999999998887643 445556777776666677777789999999999999988888899999999999999
Q ss_pred hccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccC-cchhHHHH
Q 007106 257 MLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM-YEKPSIIG 335 (618)
Q Consensus 257 ~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~ 335 (618)
+.+.++...+..++..++++.|++++|||+++....+...++.++..+...... .....+..+...... ..+...+.
T Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~ 259 (401)
T PTZ00424 182 MLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDE--LTLEGIRQFYVAVEKEEWKFDTLC 259 (401)
T ss_pred HHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCC--cccCCceEEEEecChHHHHHHHHH
Confidence 999889889999999999999999999999999888888888877665432221 112233333333222 23444455
Q ss_pred HHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccE
Q 007106 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDL 414 (618)
Q Consensus 336 ~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~ 414 (618)
.+++.. ...++||||++++.++.+++.|.+. +.+..+|++|++++|+.+++.|++|+++|||||+++++|||+|++++
T Consensus 260 ~~~~~~-~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~ 338 (401)
T PTZ00424 260 DLYETL-TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSL 338 (401)
T ss_pred HHHHhc-CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCE
Confidence 554433 3468999999999999999999764 88999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCcccCC
Q 007106 415 IIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLP 470 (618)
Q Consensus 415 VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 470 (618)
||++++|.+..+|+||+||+||.|+.|.|++++++++...++.+++.+...+++++
T Consensus 339 VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~ 394 (401)
T PTZ00424 339 VINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMP 394 (401)
T ss_pred EEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccC
Confidence 99999999999999999999999999999999999999999999998887777654
No 28
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.8e-52 Score=442.51 Aligned_cols=390 Identities=36% Similarity=0.610 Sum_probs=346.0
Q ss_pred CCCCCCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCC
Q 007106 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGR 170 (618)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~ 170 (618)
....+.+...|.+.++...++..+++.++.+++|+|.+|||+|+.++++|.++.||||||++|++|++.++... .....
T Consensus 357 g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQ-r~~~~ 435 (997)
T KOG0334|consen 357 GKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQ-RPLEE 435 (997)
T ss_pred cCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcC-CChhh
Confidence 33456788889999999999999999999999999999999999999999999999999999999999777553 33345
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcC---CCCCC
Q 007106 171 GRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA---LNLSE 245 (618)
Q Consensus 171 ~~~~~~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~---~~l~~ 245 (618)
+.+|.+|||+||++|+.|+.+++.++.. ++++++++++....+++..+++++.|+||||+++++.+-... .++.+
T Consensus 436 gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR 515 (997)
T KOG0334|consen 436 GDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRR 515 (997)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccc
Confidence 6699999999999999999999988764 578899999999999999999999999999999999886654 34566
Q ss_pred ccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEec
Q 007106 246 VQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325 (618)
Q Consensus 246 ~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~ 325 (618)
+.+||+||||+|++++|.+++..|+..+++.+|++++|||+|..+..++...+..|..+.+. ....+...+.+....+
T Consensus 516 ~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~--~~svV~k~V~q~v~V~ 593 (997)
T KOG0334|consen 516 VTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVG--GRSVVCKEVTQVVRVC 593 (997)
T ss_pred cceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEc--cceeEeccceEEEEEe
Confidence 67999999999999999999999999999999999999999999999999999988886543 4445566666666666
Q ss_pred c-CcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEcccc
Q 007106 326 S-MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403 (618)
Q Consensus 326 ~-~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~ 403 (618)
. ..+|...+.++|.+.....++||||...+.|+.+.+.|.+. +.|..+||+.++.+|..+++.|+++.+.+||||+++
T Consensus 594 ~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvv 673 (997)
T KOG0334|consen 594 AIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVV 673 (997)
T ss_pred cCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhh
Confidence 6 78899999999999888899999999999999999999764 899999999999999999999999999999999999
Q ss_pred ccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCcccCCcccccCCCccccc
Q 007106 404 ARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVEGGGDMYND 483 (618)
Q Consensus 404 ~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 483 (618)
++|+|++.+..||+||+|...++|+||+||++|+|++|.|++|.++++......|.+.++..-++.|..+.....++...
T Consensus 674 arGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l~~~f~~~ 753 (997)
T KOG0334|consen 674 ARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLLQALSERFKAK 753 (997)
T ss_pred hcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCchHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999776666675554433444333
No 29
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-50 Score=401.58 Aligned_cols=365 Identities=35% Similarity=0.562 Sum_probs=294.6
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCC-CCEEEEccCCChhHHHHHHHHHHHHHHHhh-----hcCC
Q 007106 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNE-----KHGR 170 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~-~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~-----~~~~ 170 (618)
....|..+.++.+++++|...+|..||++|..+||++..+ .|+|-.|+||||||++|-+||++.+..... ....
T Consensus 179 DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~ 258 (731)
T KOG0347|consen 179 DVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTS 258 (731)
T ss_pred ChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHH
Confidence 3445888999999999999999999999999999999998 799999999999999999999995443111 0011
Q ss_pred CCCC--eEEEEcCcHHHHHHHHHHHHHhC--CCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCC---CC
Q 007106 171 GRNP--LCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL---NL 243 (618)
Q Consensus 171 ~~~~--~~lil~Pt~~La~q~~~~l~~~~--~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~---~l 243 (618)
...+ .+||++|||+||.|+.+-+.... +.+++..++|+.....+.+.+...++|||+||++|+.++..... .+
T Consensus 259 ~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~ 338 (731)
T KOG0347|consen 259 AKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNF 338 (731)
T ss_pred hccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhh
Confidence 1233 49999999999999999998765 46788999999999999999999999999999999999987654 47
Q ss_pred CCccEEEEchhhhhccCCcHHHHHHHHHhCC-----CCCcEEEEEecCChH---------------------HHHHHHH-
Q 007106 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLP-----QNRQSMMFSATMPPW---------------------IRSLTNK- 296 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~-----~~~~~l~lSAT~~~~---------------------~~~~~~~- 296 (618)
++++++|+||+|+|++.+....+..++..+. ..+|++++|||++-. +..++..
T Consensus 339 k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~i 418 (731)
T KOG0347|consen 339 KKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKI 418 (731)
T ss_pred hhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHh
Confidence 7889999999999999999899999888875 467999999998521 1111111
Q ss_pred -hccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccc
Q 007106 297 -YLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLH 374 (618)
Q Consensus 297 -~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lh 374 (618)
+...|..+.+... ..+...+....+.+...+|.-.+..+|.. -++++|||||++..+..|+-+|..- ++...+|
T Consensus 419 g~~~kpkiiD~t~q--~~ta~~l~Es~I~C~~~eKD~ylyYfl~r--yPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LH 494 (731)
T KOG0347|consen 419 GFRGKPKIIDLTPQ--SATASTLTESLIECPPLEKDLYLYYFLTR--YPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLH 494 (731)
T ss_pred CccCCCeeEecCcc--hhHHHHHHHHhhcCCccccceeEEEEEee--cCCceEEEechHHHHHHHHHHHhhcCCCCchhh
Confidence 2234444433211 11111111112223333343333333333 2579999999999999999999764 8888999
Q ss_pred cCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHH
Q 007106 375 GDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454 (618)
Q Consensus 375 g~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 454 (618)
+.|.|.+|-+.+++|++....|||||+++++|||||.++|||||-.|++.+.|+||.||+.|++..|..++++.|.+...
T Consensus 495 A~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~ 574 (731)
T KOG0347|consen 495 ASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGP 574 (731)
T ss_pred HHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q 007106 455 VKSIERDVGCR 465 (618)
Q Consensus 455 ~~~l~~~l~~~ 465 (618)
+..|.+.|+..
T Consensus 575 ~~KL~ktL~k~ 585 (731)
T KOG0347|consen 575 LKKLCKTLKKK 585 (731)
T ss_pred HHHHHHHHhhc
Confidence 99998888653
No 30
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=3.1e-48 Score=429.45 Aligned_cols=348 Identities=22% Similarity=0.327 Sum_probs=270.7
Q ss_pred CCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHH
Q 007106 105 DISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (618)
Q Consensus 105 ~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~ 184 (618)
.+++++.+.|++.++.+|+++|.++|+.+++++|+++++|||||||++|++|+++.+.+ ....++|||+||++
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~-------~~~~~aL~l~Ptra 92 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD-------DPRATALYLAPTKA 92 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh-------CCCcEEEEEcChHH
Confidence 47899999999999999999999999999999999999999999999999999999865 12578999999999
Q ss_pred HHHHHHHHHHHhCC-CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhc----CCCCCCccEEEEchhhhhcc
Q 007106 185 LAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN----ALNLSEVQFVVLDEADQMLS 259 (618)
Q Consensus 185 La~q~~~~l~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~----~~~l~~~~~vViDEaH~~~~ 259 (618)
|++|+++.++++.. ++++..+.|+.+. .+...+...++|||+||++|...+... ...++++++|||||+|+|.+
T Consensus 93 La~q~~~~l~~l~~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 93 LAADQLRAVRELTLRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHHHhccCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 99999999998752 4566666666554 444556667899999999997543221 12378899999999999876
Q ss_pred CCcHHHHHHHHHhC-------CCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEecc------
Q 007106 260 VGFAEDVEVILERL-------PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS------ 326 (618)
Q Consensus 260 ~~~~~~~~~il~~l-------~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~------ 326 (618)
. |...+..++.++ +.++|+|++|||+++... ....++..+..+ +..+. ..............
T Consensus 172 ~-fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~--~~~~~~~~~~~~p~~~~~~~ 246 (742)
T TIGR03817 172 V-FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDG--SPRGARTVALWEPPLTELTG 246 (742)
T ss_pred c-cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCC--CCcCceEEEEecCCcccccc
Confidence 4 777766655544 467899999999998755 455666665433 21111 11111111111111
Q ss_pred ----------CcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHc---------cCCccccccCCCHHHHHHHHH
Q 007106 327 ----------MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK---------SYNCEPLHGDISQSQRERTLS 387 (618)
Q Consensus 327 ----------~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~---------~~~~~~lhg~~~~~~r~~i~~ 387 (618)
..++...+..+++ .+.++||||++++.++.++..|.+ ...+..+|+++++++|+++++
T Consensus 247 ~~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~ 323 (742)
T TIGR03817 247 ENGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELER 323 (742)
T ss_pred ccccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHH
Confidence 0123333444443 367999999999999999998764 246789999999999999999
Q ss_pred HHhcCCccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecc--hhHHHHHHHHHHhCCC
Q 007106 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTD--QQARQVKSIERDVGCR 465 (618)
Q Consensus 388 ~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~--~~~~~~~~l~~~l~~~ 465 (618)
.|++|++++||||+++++||||+++++||+++.|.+.++|+||+||+||.|+.+.++++... .|...+..++..++..
T Consensus 324 ~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~ 403 (742)
T TIGR03817 324 ALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRP 403 (742)
T ss_pred HHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999863 4555556566666655
Q ss_pred ccc
Q 007106 466 FTQ 468 (618)
Q Consensus 466 ~~~ 468 (618)
++.
T Consensus 404 ~e~ 406 (742)
T TIGR03817 404 VEA 406 (742)
T ss_pred Ccc
Confidence 443
No 31
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=1e-48 Score=404.70 Aligned_cols=377 Identities=19% Similarity=0.283 Sum_probs=306.5
Q ss_pred CCCCCCCccccccCCccccccccccCCCCccchhHHhhhhhccccccccCCCCCCCCCCccCCCCCHHHHHHHHHcCCCC
Q 007106 42 PVIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISK 121 (618)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 121 (618)
.+++...++..+|+|+....++.+++++.|++++..|......+....... ...++...++++.+....+++
T Consensus 191 ~l~~~~~al~~lH~P~~~~~~~~~~rRL~f~Ell~~ql~l~~~r~~~~~~~--------~~~~~~~~~l~~~~~~~LPF~ 262 (677)
T COG1200 191 GLPSLDEALRTLHFPKDEEDLKRARRRLAFEELLALQLSLLLRRAKRQKRS--------GIPLPANGELLAKFLAALPFK 262 (677)
T ss_pred cCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------CCCCCccHHHHHHHHHhCCCC
Confidence 355678899999999999999999999999999998877653222222211 114566778888888888888
Q ss_pred ChHHHHHHHHHHhCC------CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007106 122 LFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~------~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
||..|++++..|..+ ++.|+++++|||||++++++++..+.+ +.++.+++||..||+|+++.+.+
T Consensus 263 LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~---------G~Q~ALMAPTEILA~QH~~~~~~ 333 (677)
T COG1200 263 LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA---------GYQAALMAPTEILAEQHYESLRK 333 (677)
T ss_pred ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc---------CCeeEEeccHHHHHHHHHHHHHH
Confidence 999999999999876 468999999999999999999999866 89999999999999999999999
Q ss_pred hCC--CCcEEEEEcCcchhhhhHHhh---cC-CCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHH
Q 007106 196 SAP--SLDTICVYGGTPISHQMRALD---YG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269 (618)
Q Consensus 196 ~~~--~~~~~~~~g~~~~~~~~~~l~---~~-~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~i 269 (618)
+++ ++++..++|......+...+. ++ ++|||+|+. |..+.+.++++.+||+||.|| |+...+..
T Consensus 334 ~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA-----LiQd~V~F~~LgLVIiDEQHR-----FGV~QR~~ 403 (677)
T COG1200 334 WLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA-----LIQDKVEFHNLGLVIIDEQHR-----FGVHQRLA 403 (677)
T ss_pred HhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcch-----hhhcceeecceeEEEEecccc-----ccHHHHHH
Confidence 987 567788888877665544433 34 899999954 455567799999999999999 88888888
Q ss_pred HHhCCC-CCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHHhccCCeEE
Q 007106 270 LERLPQ-NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCI 348 (618)
Q Consensus 270 l~~l~~-~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~l 348 (618)
+..... .+++++|||||.|.+..+ ..+.|...-.+ . ..+....++.........+..++..+.++..++.+++
T Consensus 404 L~~KG~~~Ph~LvMTATPIPRTLAl--t~fgDldvS~I-d---ElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~~GrQaY 477 (677)
T COG1200 404 LREKGEQNPHVLVMTATPIPRTLAL--TAFGDLDVSII-D---ELPPGRKPITTVVIPHERRPEVYERIREEIAKGRQAY 477 (677)
T ss_pred HHHhCCCCCcEEEEeCCCchHHHHH--HHhccccchhh-c---cCCCCCCceEEEEeccccHHHHHHHHHHHHHcCCEEE
Confidence 888877 799999999999955444 44444333222 1 1222223333344455667777888888888999999
Q ss_pred EEecchhHHH--------HHHHHHHc---cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEE
Q 007106 349 VFTQTKRDAD--------RLAHAMAK---SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH 417 (618)
Q Consensus 349 Vf~~~~~~~~--------~l~~~L~~---~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~ 417 (618)
|+||-+++.+ .+++.|.. .+++.++||+|+.++++++|..|++|+++|||||+++|+|||+|+++++|+
T Consensus 478 ~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI 557 (677)
T COG1200 478 VVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI 557 (677)
T ss_pred EEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE
Confidence 9999987765 44555553 356889999999999999999999999999999999999999999999999
Q ss_pred cCCCC-ChhHHHHhhhccCCCCCcceEEEEecchh
Q 007106 418 YELPN-TSETFVHRTGRTGRAGKKGSAILIYTDQQ 451 (618)
Q Consensus 418 ~~~p~-~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 451 (618)
.++.+ .+.+++|.+||+||...+++|++++.+..
T Consensus 558 e~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 558 ENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred echhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 99987 99999999999999999999999998776
No 32
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.5e-49 Score=375.36 Aligned_cols=362 Identities=34% Similarity=0.603 Sum_probs=323.6
Q ss_pred CccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEE
Q 007106 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (618)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil 179 (618)
+|++++|+++|++.++..||++|+.+|+.||..+.++.|+++++++|+|||.+|.+++++.+.- .....+++++
T Consensus 27 sfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~------~~ke~qalil 100 (397)
T KOG0327|consen 27 SFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM------SVKETQALIL 100 (397)
T ss_pred hhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc------chHHHHHHHh
Confidence 7899999999999999999999999999999999999999999999999999999999988732 1225689999
Q ss_pred cCcHHHHHHHHHHHHHhCCCC--cEEEEEcCcchhhhhHHh-hcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhh
Q 007106 180 APTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRAL-DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (618)
Q Consensus 180 ~Pt~~La~q~~~~l~~~~~~~--~~~~~~g~~~~~~~~~~l-~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~ 256 (618)
+|+++||.|..+....++... .+..+.++.+...+...+ ...++|+|+||+++.+.+....+..+.++++|+||++.
T Consensus 101 aPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDE 180 (397)
T KOG0327|consen 101 APTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADE 180 (397)
T ss_pred cchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHh
Confidence 999999999998887776544 455566777766444444 44589999999999999998888888899999999999
Q ss_pred hccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHHH
Q 007106 257 MLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336 (618)
Q Consensus 257 ~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 336 (618)
++..+|.+++..++..++++.|++++|||.|+++......|+.+|..+....+. .....+.++++.....+|...+.+
T Consensus 181 mLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~--ltl~gikq~~i~v~k~~k~~~l~d 258 (397)
T KOG0327|consen 181 MLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDE--LTLEGIKQFYINVEKEEKLDTLCD 258 (397)
T ss_pred hhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchh--hhhhheeeeeeeccccccccHHHH
Confidence 999999999999999999999999999999999999999999999998764333 445566777777777778888888
Q ss_pred HHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEE
Q 007106 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLI 415 (618)
Q Consensus 337 ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~V 415 (618)
+.+ .-.+.+|||++++.++.+...|... +.+..+|++|.+.+|+.++..|+.|..+|||+|+.+++|+|+..+..|
T Consensus 259 l~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slv 335 (397)
T KOG0327|consen 259 LYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLV 335 (397)
T ss_pred HHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhccee
Confidence 877 3458899999999999999999554 889999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCcccCCcc
Q 007106 416 IHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRI 472 (618)
Q Consensus 416 I~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 472 (618)
|+|++|.+.++|+||+||+||.|.+|.++.++++.+...+++++++++..++++|..
T Consensus 336 inydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~ 392 (397)
T KOG0327|consen 336 VNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSN 392 (397)
T ss_pred eeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccc
Confidence 999999999999999999999999999999999999999999999999999988763
No 33
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=4.2e-48 Score=427.13 Aligned_cols=377 Identities=18% Similarity=0.276 Sum_probs=286.5
Q ss_pred cCCCCCCCCCccccccCCccccccccccCCCCccchhHHhhhhhccccccccCCCCCCCCCCccCCCCCHHHHHHHHHcC
Q 007106 39 KSGPVIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRG 118 (618)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 118 (618)
....+++...|++.+|+|.+.+.++.+++++.|+|++..|............... . .+.....+.+.+....
T Consensus 187 ~~~~l~~~~~al~~iH~P~~~~~~~~a~~rl~~~El~~~q~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~l 258 (681)
T PRK10917 187 EKYGLLSLAEALRAIHFPPSDEDLHPARRRLKFEELFALQLSLLLLRAGRRSKKA-----G---PLPYDGELLKKFLASL 258 (681)
T ss_pred HhcCCCCHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----C---CCCCChHHHHHHHHhC
Confidence 3345778889999999999999999999999999999988665332222211110 0 1223456777776666
Q ss_pred CCCChHHHHHHHHHHhCC------CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHH
Q 007106 119 ISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192 (618)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~------~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~ 192 (618)
.++||++|+++++.+.++ +++|++++||||||++|++|++..+.+ +.+++|++||++||.|+++.
T Consensus 259 ~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---------g~q~lilaPT~~LA~Q~~~~ 329 (681)
T PRK10917 259 PFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---------GYQAALMAPTEILAEQHYEN 329 (681)
T ss_pred CCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---------CCeEEEEeccHHHHHHHHHH
Confidence 667999999999999886 479999999999999999999988744 78999999999999999999
Q ss_pred HHHhCCC--CcEEEEEcCcchhhhhHH---hhc-CCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHH
Q 007106 193 FHESAPS--LDTICVYGGTPISHQMRA---LDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDV 266 (618)
Q Consensus 193 l~~~~~~--~~~~~~~g~~~~~~~~~~---l~~-~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~ 266 (618)
++++++. +++.+++++.+...+... +.. .++|+|+||+.+.+ .+.+.++++|||||+|++ ....
T Consensus 330 l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrf-----g~~q 399 (681)
T PRK10917 330 LKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRF-----GVEQ 399 (681)
T ss_pred HHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhh-----hHHH
Confidence 9998864 678888888876544333 333 48999999987753 345789999999999994 4445
Q ss_pred HHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHHhccCCe
Q 007106 267 EVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGK 346 (618)
Q Consensus 267 ~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~ 346 (618)
...+......+++|+|||||.+....+.. +.+.. +..+...... ...+.... .....+...+..+.+...++.+
T Consensus 400 r~~l~~~~~~~~iL~~SATp~prtl~~~~--~g~~~-~s~i~~~p~~-r~~i~~~~--~~~~~~~~~~~~i~~~~~~g~q 473 (681)
T PRK10917 400 RLALREKGENPHVLVMTATPIPRTLAMTA--YGDLD-VSVIDELPPG-RKPITTVV--IPDSRRDEVYERIREEIAKGRQ 473 (681)
T ss_pred HHHHHhcCCCCCEEEEeCCCCHHHHHHHH--cCCCc-eEEEecCCCC-CCCcEEEE--eCcccHHHHHHHHHHHHHcCCc
Confidence 55566666678999999999876554433 22222 1111111110 11222222 2223334444555555567889
Q ss_pred EEEEecchh--------HHHHHHHHHHcc---CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEE
Q 007106 347 CIVFTQTKR--------DADRLAHAMAKS---YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLI 415 (618)
Q Consensus 347 ~lVf~~~~~--------~~~~l~~~L~~~---~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~V 415 (618)
++|||+.++ .++.+++.|.+. +++..+||+|++++|++++++|++|+.+|||||+++++|||+|++++|
T Consensus 474 ~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~V 553 (681)
T PRK10917 474 AYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVM 553 (681)
T ss_pred EEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEE
Confidence 999999654 445667777654 569999999999999999999999999999999999999999999999
Q ss_pred EEcCCCC-ChhHHHHhhhccCCCCCcceEEEEec
Q 007106 416 IHYELPN-TSETFVHRTGRTGRAGKKGSAILIYT 448 (618)
Q Consensus 416 I~~~~p~-~~~~~~Qr~GR~gR~g~~g~~~~~~~ 448 (618)
|++++|. ...+|+|++||+||.+.++.|++++.
T Consensus 554 Ii~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 554 VIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred EEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 9999997 68999999999999999999999995
No 34
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=7e-47 Score=414.52 Aligned_cols=340 Identities=21% Similarity=0.316 Sum_probs=263.7
Q ss_pred CCCCCHHHHHHHHH-cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcC
Q 007106 103 KLDISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (618)
Q Consensus 103 ~~~l~~~l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~P 181 (618)
.++....+...++. +++..|+|+|+++|+.++.++|+|+++|||+|||++|++|++.. ...+|||+|
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------------~GiTLVISP 508 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------------PGITLVISP 508 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------------CCcEEEEeC
Confidence 46777778777755 68999999999999999999999999999999999999999854 457999999
Q ss_pred cHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh------cCCCEEEEChHHHHH--HHHhc--CC-CCCCccEEE
Q 007106 182 TRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD------YGVDAVVGTPGRVID--LIKRN--AL-NLSEVQFVV 250 (618)
Q Consensus 182 t~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~------~~~~Ilv~T~~~l~~--~l~~~--~~-~l~~~~~vV 250 (618)
+++|+.++...+... .+....+.++.....+...+. ..++|||+||++|.. .+... .+ ....+.+||
T Consensus 509 LiSLmqDQV~~L~~~--GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIV 586 (1195)
T PLN03137 509 LVSLIQDQIMNLLQA--NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFV 586 (1195)
T ss_pred HHHHHHHHHHHHHhC--CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceec
Confidence 999998776666654 577788888777665544433 358999999999852 12211 11 134588999
Q ss_pred EchhhhhccCC--cHHHHHHH--HHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEecc
Q 007106 251 LDEADQMLSVG--FAEDVEVI--LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326 (618)
Q Consensus 251 iDEaH~~~~~~--~~~~~~~i--l~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 326 (618)
|||||++++|+ |.+.+..+ +....+..++++||||+++.+...+...+.-...+.+..... ..++. +.+...
T Consensus 587 IDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~---RpNL~-y~Vv~k 662 (1195)
T PLN03137 587 IDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFN---RPNLW-YSVVPK 662 (1195)
T ss_pred cCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccC---ccceE-EEEecc
Confidence 99999999986 66666553 444446788999999999988887666654322222111111 11121 222222
Q ss_pred CcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCCccEEEEcccccc
Q 007106 327 MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAAR 405 (618)
Q Consensus 327 ~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~ 405 (618)
.......+..++.........||||.++++++.+++.|.+ .+.+..+|++|++++|..+++.|.+++++|||||+++++
T Consensus 663 ~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGM 742 (1195)
T PLN03137 663 TKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGM 742 (1195)
T ss_pred chhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhc
Confidence 2122334455555444456889999999999999999965 489999999999999999999999999999999999999
Q ss_pred CCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHH
Q 007106 406 GLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460 (618)
Q Consensus 406 Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 460 (618)
|||+|++++||||++|.+++.|+||+|||||.|.++.|++||...|...++.+..
T Consensus 743 GIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 743 GINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred CCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999888776666543
No 35
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1e-47 Score=421.50 Aligned_cols=379 Identities=22% Similarity=0.253 Sum_probs=278.4
Q ss_pred ccCCCCCCCCCccccccCCccccccccccCCCCccchhHHhhhhhccccccccCCCCCCCCCCccCCCCCHHHHHHHHHc
Q 007106 38 AKSGPVIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARR 117 (618)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 117 (618)
++...+++...++..+|+|.+.+.++.+++++.|+|++.+|............... .. .+.....+.+.+.+.
T Consensus 159 ~~~~~l~~~~~al~~iH~P~~~~~~~~a~~rl~~~E~~~~ql~l~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~ 231 (630)
T TIGR00643 159 REKYGLLSLEDALRAIHFPKTLSLLELARRRLIFDEFFYLQLAMLARRLGEKQQFS----AP---PANPSEELLTKFLAS 231 (630)
T ss_pred HhhcCCCCHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CC---CCCCChHHHHHHHHh
Confidence 34455778899999999999999999999999999999988765332221111100 00 122333454445444
Q ss_pred CCCCChHHHHHHHHHHhCC------CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHH
Q 007106 118 GISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (618)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~------~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~ 191 (618)
..++||+.|+++++.++++ +++|++++||||||++|++|++..+.+ +.+++|++||++||.|+++
T Consensus 232 lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---------g~qvlilaPT~~LA~Q~~~ 302 (630)
T TIGR00643 232 LPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---------GYQVALMAPTEILAEQHYN 302 (630)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---------CCcEEEECCHHHHHHHHHH
Confidence 4447999999999999876 368999999999999999999988754 7789999999999999999
Q ss_pred HHHHhCC--CCcEEEEEcCcchhhhhHH---hh-cCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHH
Q 007106 192 EFHESAP--SLDTICVYGGTPISHQMRA---LD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265 (618)
Q Consensus 192 ~l~~~~~--~~~~~~~~g~~~~~~~~~~---l~-~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~ 265 (618)
.++++++ ++++.+++++.....+... +. ..++|||+||..+.+ .+.+.++++|||||+|++ ...
T Consensus 303 ~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~f-----g~~ 372 (630)
T TIGR00643 303 SLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRF-----GVE 372 (630)
T ss_pred HHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhc-----cHH
Confidence 9999886 4778888988776554333 22 347999999987753 345789999999999985 223
Q ss_pred HHHHH-HhCC--CCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHHhc
Q 007106 266 VEVIL-ERLP--QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA 342 (618)
Q Consensus 266 ~~~il-~~l~--~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~ 342 (618)
....+ .... ..+++|+|||||++....+......+...+.... . ....+.... .....+...+..+.+...
T Consensus 373 qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p---~-~r~~i~~~~--~~~~~~~~~~~~i~~~l~ 446 (630)
T TIGR00643 373 QRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELP---P-GRKPITTVL--IKHDEKDIVYEFIEEEIA 446 (630)
T ss_pred HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCC---C-CCCceEEEE--eCcchHHHHHHHHHHHHH
Confidence 33333 3332 2689999999987754443321111111111111 0 011222222 222333444555555556
Q ss_pred cCCeEEEEecchh--------HHHHHHHHHHc---cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCC
Q 007106 343 KGGKCIVFTQTKR--------DADRLAHAMAK---SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN 411 (618)
Q Consensus 343 ~~~~~lVf~~~~~--------~~~~l~~~L~~---~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~ 411 (618)
++.+++|||+.++ .++.+++.|.+ .+.+..+||+|++++|+++++.|++|+.+|||||+++++|||+|+
T Consensus 447 ~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~ 526 (630)
T TIGR00643 447 KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPN 526 (630)
T ss_pred hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCC
Confidence 6789999999764 45567777764 367899999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCC-ChhHHHHhhhccCCCCCcceEEEEec
Q 007106 412 VDLIIHYELPN-TSETFVHRTGRTGRAGKKGSAILIYT 448 (618)
Q Consensus 412 ~~~VI~~~~p~-~~~~~~Qr~GR~gR~g~~g~~~~~~~ 448 (618)
+++||++++|. +..+|+|++||+||.+++|.|++++.
T Consensus 527 v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 527 ATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred CcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 99999999997 78999999999999999999999993
No 36
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.4e-48 Score=365.91 Aligned_cols=370 Identities=31% Similarity=0.484 Sum_probs=305.5
Q ss_pred CCCCCCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCC--CCEEEEccCCChhHHHHHHHHHHHHHHHhhhc
Q 007106 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168 (618)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~--~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~ 168 (618)
.+.+-.....|++|.+.+++++.|+.++|..|+.+|..++|.++.. +++|.++..|+|||.+|.+.||.++..
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~----- 156 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP----- 156 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc-----
Confidence 4555567778999999999999999999999999999999999987 689999999999999999999988733
Q ss_pred CCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcE--EEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHh-cCCCCCC
Q 007106 169 GRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSE 245 (618)
Q Consensus 169 ~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~--~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~-~~~~l~~ 245 (618)
.-..|++++|+||++||.|..+.+.++.....+ ....-+.. ..+.-.-..+|+|+||+.+.+++.. ..+.+..
T Consensus 157 -~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk---~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~k 232 (477)
T KOG0332|consen 157 -DVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSK---AKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEK 232 (477)
T ss_pred -cccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcc---cccCCcchhheeeCCCccHHHHHHHHHhhChhh
Confidence 233678999999999999999999988764433 22222221 1111111258999999999999988 6678899
Q ss_pred ccEEEEchhhhhccC-CcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEe
Q 007106 246 VQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA 324 (618)
Q Consensus 246 ~~~vViDEaH~~~~~-~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~ 324 (618)
++++|+|||+.|++. +|.++-..|+..++.+.|+|++|||....+..++..++.++..+.+. ..+..+....+.+..+
T Consensus 233 ikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk-~eel~L~~IkQlyv~C 311 (477)
T KOG0332|consen 233 IKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILK-REELALDNIKQLYVLC 311 (477)
T ss_pred ceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeee-hhhccccchhhheeec
Confidence 999999999988875 58888899999999999999999999999999999999999888653 2333333444445555
Q ss_pred ccCcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCCccEEEEcccc
Q 007106 325 TSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403 (618)
Q Consensus 325 ~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~ 403 (618)
....+|...+..+.... .-++.+|||.+++.+..++..|.. ...+.++||+|..++|..+++.|+.|..+|||+|+++
T Consensus 312 ~~~~~K~~~l~~lyg~~-tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ 390 (477)
T KOG0332|consen 312 ACRDDKYQALVNLYGLL-TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVC 390 (477)
T ss_pred cchhhHHHHHHHHHhhh-hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechh
Confidence 56667888777754433 346899999999999999999965 4899999999999999999999999999999999999
Q ss_pred ccCCCCCCccEEEEcCCCC------ChhHHHHhhhccCCCCCcceEEEEecchhH-HHHHHHHHHhCCCcccCCc
Q 007106 404 ARGLDVPNVDLIIHYELPN------TSETFVHRTGRTGRAGKKGSAILIYTDQQA-RQVKSIERDVGCRFTQLPR 471 (618)
Q Consensus 404 ~~Gidi~~~~~VI~~~~p~------~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~ 471 (618)
+||||++.+++||+||+|. +.+.|+||+||+||.|++|.++-++...+. ..+..|++..+..+..+..
T Consensus 391 ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~ 465 (477)
T KOG0332|consen 391 ARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDP 465 (477)
T ss_pred hcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCC
Confidence 9999999999999999996 789999999999999999999998877655 4455787777666555443
No 37
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.4e-48 Score=371.81 Aligned_cols=364 Identities=31% Similarity=0.513 Sum_probs=334.8
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEE
Q 007106 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (618)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~l 177 (618)
.-.|+.++++..+++++.+.+|..|||+|++.+|.++++++++-.+-||||||.+|++||++.+..+. ..+.+++
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-----~~g~Ral 94 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-----QTGLRAL 94 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-----cccccee
Confidence 45789999999999999999999999999999999999999999999999999999999999987744 2367899
Q ss_pred EEcCcHHHHHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhh
Q 007106 178 VLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (618)
Q Consensus 178 il~Pt~~La~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH 255 (618)
++.||++|+.|..+.++++.. +++..+++++....++...+..++|||++||++++++.-.-.+.++.+.|||+||++
T Consensus 95 ilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad 174 (529)
T KOG0337|consen 95 ILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD 174 (529)
T ss_pred eccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh
Confidence 999999999999999998765 567888999999999999999899999999999988777766889999999999999
Q ss_pred hhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHH
Q 007106 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335 (618)
Q Consensus 256 ~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 335 (618)
+++.++|.+++.+++.+++...|+++||||+|+.+..+...-+.+|..+.+ +.+..+..........+...+|...|.
T Consensus 175 rlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRl--dvetkise~lk~~f~~~~~a~K~aaLl 252 (529)
T KOG0337|consen 175 RLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRL--DVETKISELLKVRFFRVRKAEKEAALL 252 (529)
T ss_pred HHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEe--ehhhhcchhhhhheeeeccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999985 445566666777777788888999999
Q ss_pred HHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccE
Q 007106 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDL 414 (618)
Q Consensus 336 ~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~ 414 (618)
.++.......+++|||.+...++.+...|... +.+..+.+.|++.-|...+..|..++..+||.|+++++|+|||-.+.
T Consensus 253 ~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldn 332 (529)
T KOG0337|consen 253 SILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDN 332 (529)
T ss_pred HHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccc
Confidence 99998877789999999999999999999764 88999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCccc
Q 007106 415 IIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQ 468 (618)
Q Consensus 415 VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 468 (618)
||+||.|.+..-|+||+||+.|+|+.|.+|.++.+++..++-+|...+...+..
T Consensus 333 vinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~ 386 (529)
T KOG0337|consen 333 VINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIF 386 (529)
T ss_pred cccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceee
Confidence 999999999999999999999999999999999999999999988888776554
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=7.3e-46 Score=395.32 Aligned_cols=325 Identities=21% Similarity=0.367 Sum_probs=251.0
Q ss_pred HcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007106 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 116 ~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
..++..|+|+|.++|+.+++++|+++++|||+|||++|++|++.. ...+|||+|+++|+.|+++.+..
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------------~~~~lVi~P~~~L~~dq~~~l~~ 73 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------------DGITLVISPLISLMEDQVLQLKA 73 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------------CCcEEEEecHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999998743 45799999999999999999987
Q ss_pred hCCCCcEEEEEcCcchhhhhHH---h-hcCCCEEEEChHHHHHHH-HhcCC-CCCCccEEEEchhhhhccCC--cHHHHH
Q 007106 196 SAPSLDTICVYGGTPISHQMRA---L-DYGVDAVVGTPGRVIDLI-KRNAL-NLSEVQFVVLDEADQMLSVG--FAEDVE 267 (618)
Q Consensus 196 ~~~~~~~~~~~g~~~~~~~~~~---l-~~~~~Ilv~T~~~l~~~l-~~~~~-~l~~~~~vViDEaH~~~~~~--~~~~~~ 267 (618)
. ++.+..+.+.....+.... + ...++|+++||+++.... ....+ ...++++|||||||++.+|+ |...+.
T Consensus 74 ~--gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~ 151 (470)
T TIGR00614 74 S--GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYK 151 (470)
T ss_pred c--CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHH
Confidence 5 4666666666554433222 2 234899999999985322 11111 46789999999999999876 555544
Q ss_pred HH--HHhCCCCCcEEEEEecCChHHHHHHHHhcc--CCceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHHhcc
Q 007106 268 VI--LERLPQNRQSMMFSATMPPWIRSLTNKYLK--NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343 (618)
Q Consensus 268 ~i--l~~l~~~~~~l~lSAT~~~~~~~~~~~~l~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~ 343 (618)
.+ +....++.++++||||+++.+...+...+. ++..+.. .... .++. +.+..........+..++....+
T Consensus 152 ~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~-s~~r----~nl~-~~v~~~~~~~~~~l~~~l~~~~~ 225 (470)
T TIGR00614 152 ALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT-SFDR----PNLY-YEVRRKTPKILEDLLRFIRKEFK 225 (470)
T ss_pred HHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC-CCCC----CCcE-EEEEeCCccHHHHHHHHHHHhcC
Confidence 43 222335788999999999988776655542 3333321 1111 1111 11222222233344455544445
Q ss_pred CCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCCC
Q 007106 344 GGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN 422 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~ 422 (618)
+..+||||+++++++.+++.|.+ .+.+..+|++|++++|+++++.|++|+++|||||+++++|||+|++++||++++|.
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~ 305 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPK 305 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCC
Confidence 66779999999999999999965 48899999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHH
Q 007106 423 TSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460 (618)
Q Consensus 423 ~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 460 (618)
+++.|+||+||+||.|.++.|++++.+.|...++.+..
T Consensus 306 s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 306 SMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred CHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 99999999999999999999999999998877766543
No 39
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=5.6e-47 Score=381.27 Aligned_cols=356 Identities=29% Similarity=0.494 Sum_probs=305.7
Q ss_pred CCCCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCC
Q 007106 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172 (618)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~ 172 (618)
+......+|+++.+..+++..|+..+|..||++|..|||.++.++|+||++..|+|||++|.+.+++.+.. +..
T Consensus 19 V~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~------~~~ 92 (980)
T KOG4284|consen 19 VQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS------RSS 92 (980)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc------ccC
Confidence 34445567889999999999999999999999999999999999999999999999999998888877632 334
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCC---CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~---~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~v 249 (618)
..+++||+|||++|.|+.+.+.++++ +.++.+..|++........++. ++|+|+||++|.++++...++..+++++
T Consensus 93 ~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vrlf 171 (980)
T KOG4284|consen 93 HIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVRLF 171 (980)
T ss_pred cceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccceeEE
Confidence 67899999999999999999998876 6778889999887776665544 6899999999999999999999999999
Q ss_pred EEchhhhhcc-CCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCc
Q 007106 250 VLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328 (618)
Q Consensus 250 ViDEaH~~~~-~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 328 (618)
|+||||.+++ ..|..++..|+..+|+.+|++++|||-|..+.+++..|+.+|..+.+-.+.... ..+.++.......
T Consensus 172 VLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L--~GikQyv~~~~s~ 249 (980)
T KOG4284|consen 172 VLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQL--FGIKQYVVAKCSP 249 (980)
T ss_pred EeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCcee--echhheeeeccCC
Confidence 9999999998 569999999999999999999999999999999999999999999875443322 2233333322222
Q ss_pred --------chhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCCccEEEE
Q 007106 329 --------EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399 (618)
Q Consensus 329 --------~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVa 399 (618)
.|...|.++++.+ +-.+.||||+....|+-++.+|.. .+.|.++.|.|++.+|..+++.++.-.++|||+
T Consensus 250 nnsveemrlklq~L~~vf~~i-py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVs 328 (980)
T KOG4284|consen 250 NNSVEEMRLKLQKLTHVFKSI-PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVS 328 (980)
T ss_pred cchHHHHHHHHHHHHHHHhhC-chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEe
Confidence 2445555555554 345899999999999999999965 599999999999999999999999999999999
Q ss_pred ccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhH-HHHHHH
Q 007106 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA-RQVKSI 458 (618)
Q Consensus 400 T~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~-~~~~~l 458 (618)
|+..++|||-++++.||+.|+|.+.+.|.||||||||.|..|.+++|+..... ..+..+
T Consensus 329 TDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 329 TDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred cchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999986644 443333
No 40
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.2e-46 Score=363.88 Aligned_cols=350 Identities=31% Similarity=0.502 Sum_probs=279.6
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHhC---------CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEE
Q 007106 108 QDIVAALARRGISKLFPIQKAVLEPAMQ---------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (618)
Q Consensus 108 ~~l~~~l~~~~~~~l~~~Q~~~i~~i~~---------~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~li 178 (618)
..+.+++.++.+..+.|+|..++|+++. .+|+.|.||||||||++|.+||++.+.+.. -+..++||
T Consensus 146 a~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~-----v~~LRavV 220 (620)
T KOG0350|consen 146 ATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP-----VKRLRAVV 220 (620)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC-----ccceEEEE
Confidence 3344558889999999999999999853 368999999999999999999999986522 22468999
Q ss_pred EcCcHHHHHHHHHHHHHhCCCCc--EEEEEcCcchhhhhHHhhcC-----CCEEEEChHHHHHHHHh-cCCCCCCccEEE
Q 007106 179 LAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYG-----VDAVVGTPGRVIDLIKR-NALNLSEVQFVV 250 (618)
Q Consensus 179 l~Pt~~La~q~~~~l~~~~~~~~--~~~~~g~~~~~~~~~~l~~~-----~~Ilv~T~~~l~~~l~~-~~~~l~~~~~vV 250 (618)
|+||++|+.|+++.|.++.+... ++.+.+..+...+.+.+... +||||+||++|.+++.+ ..+++++++++|
T Consensus 221 ivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLV 300 (620)
T KOG0350|consen 221 IVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLV 300 (620)
T ss_pred EeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEE
Confidence 99999999999999999987544 45556666666666666543 58999999999999985 668899999999
Q ss_pred EchhhhhccCCcHHHHHHHHHhCC----------------------------------CCCcEEEEEecCChHHHHHHHH
Q 007106 251 LDEADQMLSVGFAEDVEVILERLP----------------------------------QNRQSMMFSATMPPWIRSLTNK 296 (618)
Q Consensus 251 iDEaH~~~~~~~~~~~~~il~~l~----------------------------------~~~~~l~lSAT~~~~~~~~~~~ 296 (618)
|||||||++..|...+..++..+. +..+.+++|||+......+...
T Consensus 301 IDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l 380 (620)
T KOG0350|consen 301 IDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDL 380 (620)
T ss_pred echHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhh
Confidence 999999988766655555544431 1223577788877666666666
Q ss_pred hccCCceEeeccC--CcccccCCeEEEEEeccCcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHc-----cCC
Q 007106 297 YLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-----SYN 369 (618)
Q Consensus 297 ~l~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-----~~~ 369 (618)
-+..|....+... ....+...+....+..+...+...+..+|... +..++|+|+++...+..++..|+- .+.
T Consensus 381 ~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~-k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~ 459 (620)
T KOG0350|consen 381 TLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN-KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFK 459 (620)
T ss_pred hcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh-hcceEEEEecchHHHHHHHHHHHHHhccccch
Confidence 6666644443321 22233444555566666667777777777654 567999999999999999998862 356
Q ss_pred ccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecc
Q 007106 370 CEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTD 449 (618)
Q Consensus 370 ~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~ 449 (618)
+..+.|.++...|.+.++.|..|++.||||+|+++||||+.+++.||+||+|.+...|+||+||++|+|+.|.|+.+.+.
T Consensus 460 ~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~ 539 (620)
T KOG0350|consen 460 VSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDK 539 (620)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeecc
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhC
Q 007106 450 QQARQVKSIERDVG 463 (618)
Q Consensus 450 ~~~~~~~~l~~~l~ 463 (618)
.+...+.++.+...
T Consensus 540 ~~~r~F~klL~~~~ 553 (620)
T KOG0350|consen 540 HEKRLFSKLLKKTN 553 (620)
T ss_pred ccchHHHHHHHHhc
Confidence 98877766655443
No 41
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.5e-44 Score=403.22 Aligned_cols=321 Identities=19% Similarity=0.264 Sum_probs=253.7
Q ss_pred CCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCC------CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEE
Q 007106 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (618)
Q Consensus 104 ~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~------~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~l 177 (618)
++.+..+.+.+.....++||+.|.+||+.++++ +|+|++++||+|||.+|++|++..+.+ +.+++
T Consensus 434 ~~~~~~~~~~~~~~~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---------g~qvl 504 (926)
T TIGR00580 434 FPPDLEWQQEFEDSFPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---------GKQVA 504 (926)
T ss_pred CCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---------CCeEE
Confidence 445667777776654446999999999999885 689999999999999999999988755 67899
Q ss_pred EEcCcHHHHHHHHHHHHHhCCC--CcEEEEEcCcchhhhhH---Hhhc-CCCEEEEChHHHHHHHHhcCCCCCCccEEEE
Q 007106 178 VLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR---ALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (618)
Q Consensus 178 il~Pt~~La~q~~~~l~~~~~~--~~~~~~~g~~~~~~~~~---~l~~-~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vVi 251 (618)
||+||++||.|+++.+++++.. +++..+++..+..++.. .+.. .++|||+||..+ ...+.++++++|||
T Consensus 505 vLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVI 579 (926)
T TIGR00580 505 VLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLII 579 (926)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEe
Confidence 9999999999999999998764 45566666655443332 3333 489999999533 24466899999999
Q ss_pred chhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchh
Q 007106 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331 (618)
Q Consensus 252 DEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~ 331 (618)
||+|+ |.......+..++.++|+|+|||||++.+..+....+.++..+...+.. ...+..+.... ...
T Consensus 580 DEahr-----fgv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~----R~~V~t~v~~~---~~~ 647 (926)
T TIGR00580 580 DEEQR-----FGVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED----RLPVRTFVMEY---DPE 647 (926)
T ss_pred ecccc-----cchhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC----ccceEEEEEec---CHH
Confidence 99999 4556677778888899999999999887766655555555555432111 11222222221 122
Q ss_pred HHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHc---cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCC
Q 007106 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK---SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLD 408 (618)
Q Consensus 332 ~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~---~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gid 408 (618)
.+...+..+..++++++|||++++.++.+++.|.+ .+++..+||+|++.+|++++++|++|+++|||||+++++|||
T Consensus 648 ~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GID 727 (926)
T TIGR00580 648 LVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGID 727 (926)
T ss_pred HHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccc
Confidence 22334445556788999999999999999999976 467899999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCCCC-ChhHHHHhhhccCCCCCcceEEEEecch
Q 007106 409 VPNVDLIIHYELPN-TSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 409 i~~~~~VI~~~~p~-~~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
+|++++||++++|. ++.+|+||+||+||.+++|.|++++.+.
T Consensus 728 Ip~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 728 IPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred cccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 99999999999976 7889999999999999999999998653
No 42
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=5.2e-44 Score=390.65 Aligned_cols=331 Identities=21% Similarity=0.364 Sum_probs=252.7
Q ss_pred CCCHHHHHHHHH-cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcH
Q 007106 105 DISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (618)
Q Consensus 105 ~l~~~l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~ 183 (618)
+.+....+.|++ .++..++|+|+++++.+++++|+++.+|||+|||++|++|++.. ...+|||+|++
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------------~g~tlVisPl~ 75 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------------DGLTLVVSPLI 75 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------------CCCEEEEecHH
Confidence 344445555644 69999999999999999999999999999999999999998754 35799999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHH---h-hcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhcc
Q 007106 184 ELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA---L-DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (618)
Q Consensus 184 ~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~---l-~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~ 259 (618)
+|+.|+.+.++.. ++.+.++.+.......... + ....+++++||++|........+...++++|||||||++.+
T Consensus 76 sL~~dqv~~l~~~--gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~ 153 (607)
T PRK11057 76 SLMKDQVDQLLAN--GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQ 153 (607)
T ss_pred HHHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccccc
Confidence 9999999999876 4666666666554433222 2 23478999999998643222233455789999999999998
Q ss_pred CC--cHHHHHHH---HHhCCCCCcEEEEEecCChHHHHHHHHhcc--CCceEeeccCCcccccCCeEEEEEeccCcchhH
Q 007106 260 VG--FAEDVEVI---LERLPQNRQSMMFSATMPPWIRSLTNKYLK--NPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332 (618)
Q Consensus 260 ~~--~~~~~~~i---l~~l~~~~~~l~lSAT~~~~~~~~~~~~l~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 332 (618)
|+ |.+.+..+ ...+ ++.++++||||+++.+...+...+. ++.... ..... .++. +.+ .....+..
T Consensus 154 ~G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~--~~~~r---~nl~-~~v-~~~~~~~~ 225 (607)
T PRK11057 154 WGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI--SSFDR---PNIR-YTL-VEKFKPLD 225 (607)
T ss_pred ccCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE--CCCCC---Ccce-eee-eeccchHH
Confidence 75 55444333 3333 5788999999999887765544432 333221 11110 1111 111 11222333
Q ss_pred HHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCC
Q 007106 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN 411 (618)
Q Consensus 333 ~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~ 411 (618)
.+..++.. ..+.++||||+++++++.+++.|.+. +.+..+|++|++++|+++++.|++++++|||||+++++|||+|+
T Consensus 226 ~l~~~l~~-~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~ 304 (607)
T PRK11057 226 QLMRYVQE-QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPN 304 (607)
T ss_pred HHHHHHHh-cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCC
Confidence 34444443 34679999999999999999999664 88999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHH
Q 007106 412 VDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458 (618)
Q Consensus 412 ~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 458 (618)
+++||+|++|.+++.|+||+||+||.|.++.|++|+++.|...++.+
T Consensus 305 V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~ 351 (607)
T PRK11057 305 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (607)
T ss_pred cCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887665544
No 43
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=9.8e-44 Score=401.54 Aligned_cols=337 Identities=20% Similarity=0.349 Sum_probs=251.1
Q ss_pred CCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHH
Q 007106 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (618)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~L 185 (618)
+++.+.+++.+ ++..|+|+|+++|+.+++++|+|+++|||||||++|++|++..+...........+.++|||+|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56777777765 68889999999999999999999999999999999999999988753322111346789999999999
Q ss_pred HHHHHHHHHH-------hC-------CCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCC--CCCCccEE
Q 007106 186 AKQVEKEFHE-------SA-------PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL--NLSEVQFV 249 (618)
Q Consensus 186 a~q~~~~l~~-------~~-------~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~--~l~~~~~v 249 (618)
++|+++.+.+ ++ +.+++.+.+|+.+...+.+.+.+.++|+||||++|..++....+ .+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999876542 21 25677888898888877777888899999999999877755432 37889999
Q ss_pred EEchhhhhccCCcHHHHHHHHHhC----CCCCcEEEEEecCChHHHHHHHHhccC------CceEeeccCCcccccCCeE
Q 007106 250 VLDEADQMLSVGFAEDVEVILERL----PQNRQSMMFSATMPPWIRSLTNKYLKN------PLTVDLVGDSDQKLADGIS 319 (618)
Q Consensus 250 ViDEaH~~~~~~~~~~~~~il~~l----~~~~~~l~lSAT~~~~~~~~~~~~l~~------~~~i~~~~~~~~~~~~~~~ 319 (618)
||||+|.+.+..++..+..++.++ ++..|+|++|||+++. ..+ ..++.. +..+.++..... ..+.
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~v-a~~L~~~~~~~~~r~~~iv~~~~~---k~~~ 251 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEV-AKFLVGYEDDGEPRDCEIVDARFV---KPFD 251 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHH-HHHhcCccccCCCCceEEEccCCC---ccce
Confidence 999999998776666655554443 3678999999999763 222 233321 212222211110 1111
Q ss_pred EEEEe-------ccCcchhH-HHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-------CCccccccCCCHHHHHH
Q 007106 320 LYSIA-------TSMYEKPS-IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-------YNCEPLHGDISQSQRER 384 (618)
Q Consensus 320 ~~~~~-------~~~~~k~~-~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-------~~~~~lhg~~~~~~r~~ 384 (618)
..... ........ ....+.+......++||||++++.++.++..|.+. ..+..+|+++++++|..
T Consensus 252 i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ 331 (876)
T PRK13767 252 IKVISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLE 331 (876)
T ss_pred EEEeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHH
Confidence 11000 01111112 22222233344679999999999999999999763 46889999999999999
Q ss_pred HHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCC-CCcceEEEEec
Q 007106 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRA-GKKGSAILIYT 448 (618)
Q Consensus 385 i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~-g~~g~~~~~~~ 448 (618)
+++.|++|+++|||||+++++|||+|++++||+++.|.++..|+||+||+||. +..+.++++..
T Consensus 332 ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 332 VEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred HHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 99999999999999999999999999999999999999999999999999986 44445554444
No 44
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.6e-43 Score=396.78 Aligned_cols=333 Identities=25% Similarity=0.396 Sum_probs=256.7
Q ss_pred CccCCCCCHHHHHHHHHcCCCCChHHHHHHHHH-HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEE
Q 007106 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (618)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~-i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~li 178 (618)
.|+++++++.+++.|++.++.+|+|+|.++++. +..++|+++++|||||||++|.+|++..+.. +.++||
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---------~~kal~ 72 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---------GGKALY 72 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---------CCcEEE
Confidence 577899999999999999999999999999998 7789999999999999999999999988743 668999
Q ss_pred EcCcHHHHHHHHHHHHHhCC-CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhh
Q 007106 179 LAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (618)
Q Consensus 179 l~Pt~~La~q~~~~l~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~ 257 (618)
|+|+++|+.|+++.++++.+ ++++..++|+...... ....++|+|+||+++..++.+....++++++|||||+|.+
T Consensus 73 i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l 149 (737)
T PRK02362 73 IVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLI 149 (737)
T ss_pred EeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcccc
Confidence 99999999999999987643 5677777776543321 1234799999999999888765555789999999999999
Q ss_pred ccCCcHHHHHHHHHhC---CCCCcEEEEEecCChHHHHHHHHhccCCc--------eEe--eccCCcccccCCeEEEEEe
Q 007106 258 LSVGFAEDVEVILERL---PQNRQSMMFSATMPPWIRSLTNKYLKNPL--------TVD--LVGDSDQKLADGISLYSIA 324 (618)
Q Consensus 258 ~~~~~~~~~~~il~~l---~~~~~~l~lSAT~~~~~~~~~~~~l~~~~--------~i~--~~~~~~~~~~~~~~~~~~~ 324 (618)
.+..++..++.++.++ .++.|+|+||||+++. .. +..|+.... .+. +.......... ....
T Consensus 150 ~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~-la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~--~~~~-- 223 (737)
T PRK02362 150 DSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DE-LADWLDAELVDSEWRPIDLREGVFYGGAIHFDD--SQRE-- 223 (737)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HH-HHHHhCCCcccCCCCCCCCeeeEecCCeecccc--cccc--
Confidence 8888888888877665 4678999999999863 22 233332111 100 00000000000 0000
Q ss_pred ccCcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-------------------------------------
Q 007106 325 TSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS------------------------------------- 367 (618)
Q Consensus 325 ~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~------------------------------------- 367 (618)
.....+...+..++.....++++||||++++.++.+++.|...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~ 303 (737)
T PRK02362 224 VEVPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVA 303 (737)
T ss_pred CCCccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHH
Confidence 0111112233333334446789999999999999988877432
Q ss_pred CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEE----cC-----CCCChhHHHHhhhccCCCC
Q 007106 368 YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH----YE-----LPNTSETFVHRTGRTGRAG 438 (618)
Q Consensus 368 ~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~----~~-----~p~~~~~~~Qr~GR~gR~g 438 (618)
..+..+|++|++++|+.+++.|++|.++|||||+++++|||+|..++||+ || .|.+..+|+||+|||||.|
T Consensus 304 ~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g 383 (737)
T PRK02362 304 KGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPG 383 (737)
T ss_pred hCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCC
Confidence 24677899999999999999999999999999999999999999999997 65 5789999999999999987
Q ss_pred Cc--ceEEEEecch
Q 007106 439 KK--GSAILIYTDQ 450 (618)
Q Consensus 439 ~~--g~~~~~~~~~ 450 (618)
.+ |.|++++...
T Consensus 384 ~d~~G~~ii~~~~~ 397 (737)
T PRK02362 384 LDPYGEAVLLAKSY 397 (737)
T ss_pred CCCCceEEEEecCc
Confidence 64 8899988664
No 45
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=4.6e-43 Score=384.78 Aligned_cols=325 Identities=22% Similarity=0.371 Sum_probs=255.2
Q ss_pred HHHH-cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHH
Q 007106 113 ALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (618)
Q Consensus 113 ~l~~-~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~ 191 (618)
.|++ +++.+++|+|+++|+.++.++|+++++|||+|||++|++|++.. ...+|||+|+++|+.|+.+
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------------~g~~lVisPl~sL~~dq~~ 71 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------------KGLTVVISPLISLMKDQVD 71 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------------CCcEEEEcCCHHHHHHHHH
Confidence 4543 78999999999999999999999999999999999999998743 4568999999999999999
Q ss_pred HHHHhCCCCcEEEEEcCcchhhhhHH----hhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCC--cHHH
Q 007106 192 EFHESAPSLDTICVYGGTPISHQMRA----LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG--FAED 265 (618)
Q Consensus 192 ~l~~~~~~~~~~~~~g~~~~~~~~~~----l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~--~~~~ 265 (618)
.++.. ++.+..+++.......... .....+|+++||++|........+...++++|||||||++.+|+ |.+.
T Consensus 72 ~l~~~--gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~ 149 (591)
T TIGR01389 72 QLRAA--GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPE 149 (591)
T ss_pred HHHHc--CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHH
Confidence 99886 4677777777665544332 22458999999999965443334456789999999999998865 5555
Q ss_pred HHHH---HHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHHhc
Q 007106 266 VEVI---LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA 342 (618)
Q Consensus 266 ~~~i---l~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~ 342 (618)
+..+ ...++ +.+++++|||+++.+...+...+.-+....+..... ..++ .........+...+.+++....
T Consensus 150 y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~nl--~~~v~~~~~~~~~l~~~l~~~~ 223 (591)
T TIGR01389 150 YQRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFITSFD---RPNL--RFSVVKKNNKQKFLLDYLKKHR 223 (591)
T ss_pred HHHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCC---CCCc--EEEEEeCCCHHHHHHHHHHhcC
Confidence 5444 34443 455999999999988877776664322211111111 1111 1222223345555666666543
Q ss_pred cCCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCC
Q 007106 343 KGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELP 421 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p 421 (618)
+.++||||++++.++.+++.|.. .+.+..+|++|++++|+.+++.|.+|+.+|||||+++++|||+|++++||++++|
T Consensus 224 -~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p 302 (591)
T TIGR01389 224 -GQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMP 302 (591)
T ss_pred -CCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCC
Confidence 57899999999999999999965 4889999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHH
Q 007106 422 NTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458 (618)
Q Consensus 422 ~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 458 (618)
.+++.|+|++||+||.|+++.|++++.+.|...++.+
T Consensus 303 ~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~ 339 (591)
T TIGR01389 303 GNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRR 339 (591)
T ss_pred CCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHH
Confidence 9999999999999999999999999998876655544
No 46
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-44 Score=360.49 Aligned_cols=367 Identities=29% Similarity=0.443 Sum_probs=299.6
Q ss_pred CCCCCCccC----CCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCC
Q 007106 95 KDEGLDISK----LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGR 170 (618)
Q Consensus 95 ~~~~~~~~~----~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~ 170 (618)
+.+...|.+ ..+.+.+++++...+|..|+|+|++|+|.++..++++.++|||+|||++|++|++..+..... ...
T Consensus 128 ~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~-~~~ 206 (593)
T KOG0344|consen 128 PPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ-EKH 206 (593)
T ss_pred CCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc-ccC
Confidence 344455555 457888999999999999999999999999999999999999999999999999999877553 122
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHhC--CCCc--EEEEEcCcchhh-hhHHhhcCCCEEEEChHHHHHHHHhcC--CCC
Q 007106 171 GRNPLCLVLAPTRELAKQVEKEFHESA--PSLD--TICVYGGTPISH-QMRALDYGVDAVVGTPGRVIDLIKRNA--LNL 243 (618)
Q Consensus 171 ~~~~~~lil~Pt~~La~q~~~~l~~~~--~~~~--~~~~~g~~~~~~-~~~~l~~~~~Ilv~T~~~l~~~l~~~~--~~l 243 (618)
..+.+++|+.||++|+.|++.++.++. +... +..........+ ........++|+|.||.++..++.... +.+
T Consensus 207 ~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl 286 (593)
T KOG0344|consen 207 KVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDL 286 (593)
T ss_pred ccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchh
Confidence 347799999999999999999999986 3221 111111111111 122223458999999999999998765 678
Q ss_pred CCccEEEEchhhhhccC-CcHHHHHHHHHhCC-CCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEE
Q 007106 244 SEVQFVVLDEADQMLSV-GFAEDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY 321 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~-~~~~~~~~il~~l~-~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~ 321 (618)
..+..+|+||+|++++. .|..++..|+..+. ++..+-+||||.+..+++.+.....++..+.+-.. ........+..
T Consensus 287 ~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~-~sa~~~V~Qel 365 (593)
T KOG0344|consen 287 SKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLR-NSANETVDQEL 365 (593)
T ss_pred heeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecc-hhHhhhhhhhh
Confidence 89999999999999998 88999999988775 46677889999999999999998888877754322 22222222233
Q ss_pred EEeccCcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHH--ccCCccccccCCCHHHHHHHHHHHhcCCccEEEE
Q 007106 322 SIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA--KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399 (618)
Q Consensus 322 ~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~--~~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVa 399 (618)
.+..+...|...+.+++....+ -++|||+++.+.|..|++.|. ..+.+.++|+..++.+|++.++.|+.|++.||||
T Consensus 366 vF~gse~~K~lA~rq~v~~g~~-PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLic 444 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASGFK-PPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLIC 444 (593)
T ss_pred eeeecchhHHHHHHHHHhccCC-CCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEe
Confidence 4556666778888888887654 499999999999999999883 4588999999999999999999999999999999
Q ss_pred ccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCC
Q 007106 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGC 464 (618)
Q Consensus 400 T~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 464 (618)
|+++++|+|+.+++.||+||.|.+...|+||+||+||+|+.|.+++||+++|...++.+...+..
T Consensus 445 Tdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~ 509 (593)
T KOG0344|consen 445 TDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQ 509 (593)
T ss_pred hhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888777655543
No 47
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=2e-42 Score=394.37 Aligned_cols=320 Identities=16% Similarity=0.222 Sum_probs=253.0
Q ss_pred CCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCC------CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEE
Q 007106 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (618)
Q Consensus 104 ~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~------~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~l 177 (618)
+..+....+.+.....++||+.|.+||+.++.+ +|+|++++||+|||.+|+.+++..+.+ +++++
T Consensus 583 ~~~~~~~~~~~~~~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---------g~qvl 653 (1147)
T PRK10689 583 FKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---------HKQVA 653 (1147)
T ss_pred CCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---------CCeEE
Confidence 344556666665554457999999999999987 789999999999999999888776543 77999
Q ss_pred EEcCcHHHHHHHHHHHHHhCCC--CcEEEEEcCcchhhhhHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCccEEEE
Q 007106 178 VLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (618)
Q Consensus 178 il~Pt~~La~q~~~~l~~~~~~--~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vVi 251 (618)
||+||++||.|+++.+.+.+.. +++.++++..+..++...+. ..++|||+||+.+. ..+.+.++++|||
T Consensus 654 vLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVI 728 (1147)
T PRK10689 654 VLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIV 728 (1147)
T ss_pred EEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEE
Confidence 9999999999999999987653 56667777766665554433 35899999997442 3455789999999
Q ss_pred chhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchh
Q 007106 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331 (618)
Q Consensus 252 DEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~ 331 (618)
||+|++ .......+..++.++|+++|||||++.+..+....+.++..+...... . ..+..+.... ...
T Consensus 729 DEahrf-----G~~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r--~~v~~~~~~~---~~~ 796 (1147)
T PRK10689 729 DEEHRF-----GVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--R--LAVKTFVREY---DSL 796 (1147)
T ss_pred echhhc-----chhHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--C--CCceEEEEec---CcH
Confidence 999995 334456677888899999999999988888777777777766532211 1 1222222211 112
Q ss_pred HHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc---CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCC
Q 007106 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS---YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLD 408 (618)
Q Consensus 332 ~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gid 408 (618)
.....++.+...+++++|||++++.++.+++.|.+. +.+..+||+|++++|++++.+|++|+++|||||+++++|||
T Consensus 797 ~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGID 876 (1147)
T PRK10689 797 VVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGID 876 (1147)
T ss_pred HHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccc
Confidence 233445555556789999999999999999999764 57889999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCCC-CChhHHHHhhhccCCCCCcceEEEEecc
Q 007106 409 VPNVDLIIHYELP-NTSETFVHRTGRTGRAGKKGSAILIYTD 449 (618)
Q Consensus 409 i~~~~~VI~~~~p-~~~~~~~Qr~GR~gR~g~~g~~~~~~~~ 449 (618)
+|++++||+.+++ .++.+|+||+||+||.++.+.|++++.+
T Consensus 877 IP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 877 IPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred cccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 9999999987765 4788999999999999999999999864
No 48
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=7.2e-42 Score=382.39 Aligned_cols=337 Identities=24% Similarity=0.369 Sum_probs=255.7
Q ss_pred CccCCCCCHHHHHHHHHcCCCCChHHHHHHHHH-HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEE
Q 007106 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (618)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~-i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~li 178 (618)
.|+++++++.+.+.|++.++.+|+|+|.++++. ++.++|+++++|||||||++|.+|++..+.. .+.++||
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--------~~~~~l~ 73 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--------EGGKAVY 73 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--------cCCeEEE
Confidence 467889999999999999999999999999986 7889999999999999999999999988754 1568999
Q ss_pred EcCcHHHHHHHHHHHHHhCC-CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhh
Q 007106 179 LAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (618)
Q Consensus 179 l~Pt~~La~q~~~~l~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~ 257 (618)
|+|+++|+.|+++.+.++.. ++++..++++...... ....++|+|+||+++..++......++++++||+||+|.+
T Consensus 74 l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l 150 (720)
T PRK00254 74 LVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLI 150 (720)
T ss_pred EeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCcc
Confidence 99999999999999987532 4667777777653321 2245799999999999888766556889999999999999
Q ss_pred ccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeE-EEEEeccCc--ch-hHH
Q 007106 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS-LYSIATSMY--EK-PSI 333 (618)
Q Consensus 258 ~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~--~k-~~~ 333 (618)
.+..+...++.++..+..+.|+|+||||+++. ..+. .|+......... . .......+. ......... .+ ...
T Consensus 151 ~~~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la-~wl~~~~~~~~~-r-pv~l~~~~~~~~~~~~~~~~~~~~~~~ 226 (720)
T PRK00254 151 GSYDRGATLEMILTHMLGRAQILGLSATVGNA-EELA-EWLNAELVVSDW-R-PVKLRKGVFYQGFLFWEDGKIERFPNS 226 (720)
T ss_pred CCccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHH-HHhCCccccCCC-C-CCcceeeEecCCeeeccCcchhcchHH
Confidence 88889999999999999999999999999863 3333 454432211100 0 000000000 000000000 00 111
Q ss_pred HHHH-HHHhccCCeEEEEecchhHHHHHHHHHHcc----------------------------------CCccccccCCC
Q 007106 334 IGQL-ITEHAKGGKCIVFTQTKRDADRLAHAMAKS----------------------------------YNCEPLHGDIS 378 (618)
Q Consensus 334 l~~l-l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----------------------------------~~~~~lhg~~~ 378 (618)
+..+ .+....+.++||||++++.++.++..|.+. ..+..+|++|+
T Consensus 227 ~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~ 306 (720)
T PRK00254 227 WESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLG 306 (720)
T ss_pred HHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCC
Confidence 1111 222234679999999999998877655321 24778999999
Q ss_pred HHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEE-------cCCCC-ChhHHHHhhhccCCCC--CcceEEEEec
Q 007106 379 QSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH-------YELPN-TSETFVHRTGRTGRAG--KKGSAILIYT 448 (618)
Q Consensus 379 ~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~-------~~~p~-~~~~~~Qr~GR~gR~g--~~g~~~~~~~ 448 (618)
+++|+.+++.|++|.++|||||+++++|||+|.+++||. ++.|. +..+|+||+|||||.+ ..|.+++++.
T Consensus 307 ~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~ 386 (720)
T PRK00254 307 RTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVAT 386 (720)
T ss_pred HHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEec
Confidence 999999999999999999999999999999999999984 44444 6779999999999964 6789999987
Q ss_pred chh
Q 007106 449 DQQ 451 (618)
Q Consensus 449 ~~~ 451 (618)
..+
T Consensus 387 ~~~ 389 (720)
T PRK00254 387 TEE 389 (720)
T ss_pred Ccc
Confidence 654
No 49
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-43 Score=320.36 Aligned_cols=332 Identities=30% Similarity=0.527 Sum_probs=287.7
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEE
Q 007106 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (618)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~li 178 (618)
..|.++-+.+++++++-.++|++|...|.++||...-++|++++|..|.|||.+|.++.++.+. +-.....+|+
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqie------pv~g~vsvlv 115 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE------PVDGQVSVLV 115 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcC------CCCCeEEEEE
Confidence 3577888999999999999999999999999999999999999999999999999999988863 2223567999
Q ss_pred EcCcHHHHHHHHHH---HHHhCCCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhh
Q 007106 179 LAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (618)
Q Consensus 179 l~Pt~~La~q~~~~---l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH 255 (618)
+|+|++||-|+..+ +.++.|.+++.+.+|+..+....+.+++-++|+|+||++++.+.++..+++++++..|+|||+
T Consensus 116 mchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcd 195 (387)
T KOG0329|consen 116 MCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECD 195 (387)
T ss_pred EeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHH
Confidence 99999999999765 556778999999999999999999999989999999999999999999999999999999999
Q ss_pred hhccC-CcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHH
Q 007106 256 QMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334 (618)
Q Consensus 256 ~~~~~-~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 334 (618)
.|+.+ +....+.++++..|...|++++|||++++++.....|+.+|..+-+ .++.........++++.....+|...+
T Consensus 196 kmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~v-DdE~KLtLHGLqQ~YvkLke~eKNrkl 274 (387)
T KOG0329|consen 196 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFV-DDEAKLTLHGLQQYYVKLKENEKNRKL 274 (387)
T ss_pred HHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhc-cchhhhhhhhHHHHHHhhhhhhhhhhh
Confidence 88753 4678888999999999999999999999999999999999998854 444555556677777777888888888
Q ss_pred HHHHHHhccCCeEEEEecchhHHHHHHHHHHccCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccE
Q 007106 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDL 414 (618)
Q Consensus 335 ~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~ 414 (618)
.+++..+. -.+++||+.++..+. | +.+ +|||+++.+|+||..++.
T Consensus 275 ~dLLd~Le-FNQVvIFvKsv~Rl~------------------------------f---~kr-~vat~lfgrgmdiervNi 319 (387)
T KOG0329|consen 275 NDLLDVLE-FNQVVIFVKSVQRLS------------------------------F---QKR-LVATDLFGRGMDIERVNI 319 (387)
T ss_pred hhhhhhhh-hcceeEeeehhhhhh------------------------------h---hhh-hHHhhhhccccCccccee
Confidence 88777653 458999998876610 2 123 899999999999999999
Q ss_pred EEEcCCCCChhHHHHhhhccCCCCCcceEEEEecch-hHHHHHHHHHHhCCCcccCCcc
Q 007106 415 IIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ-QARQVKSIERDVGCRFTQLPRI 472 (618)
Q Consensus 415 VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~ 472 (618)
||+||+|.+..+|+||++||||.|.+|.++.++... +...+..+....++.+.++|..
T Consensus 320 ~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 320 VFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred eeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 999999999999999999999999999999998754 5667778888888888888764
No 50
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=5.9e-41 Score=373.64 Aligned_cols=331 Identities=20% Similarity=0.288 Sum_probs=247.0
Q ss_pred CccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEE
Q 007106 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (618)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil 179 (618)
.|+++++++++.+.+...++. |+++|.++++.+.+++++++++|||||||+++.++++..+.+ +.++||+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~---------~~k~v~i 71 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA---------GLKSIYI 71 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh---------CCcEEEE
Confidence 467889999999999888876 999999999999999999999999999999999999887754 5689999
Q ss_pred cCcHHHHHHHHHHHHHhCC-CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhc
Q 007106 180 APTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 180 ~Pt~~La~q~~~~l~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~ 258 (618)
+|+++||.|++++++++.. +.++...+++..... .....++|+|+||+++..++..+...+.++++||+||+|++.
T Consensus 72 ~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~---~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~ 148 (674)
T PRK01172 72 VPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPP---DFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIG 148 (674)
T ss_pred echHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCh---hhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhcc
Confidence 9999999999999987532 455666666554322 122457999999999998888776668899999999999998
Q ss_pred cCCcHHHHHHHHHh---CCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEE----EEeccCcchh
Q 007106 259 SVGFAEDVEVILER---LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY----SIATSMYEKP 331 (618)
Q Consensus 259 ~~~~~~~~~~il~~---l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~k~ 331 (618)
+..+...++.++.. ++++.|+|+||||+++. .++ ..|+....... ............ ..........
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~l-a~wl~~~~~~~----~~r~vpl~~~i~~~~~~~~~~~~~~~ 222 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVSNA-NEL-AQWLNASLIKS----NFRPVPLKLGILYRKRLILDGYERSQ 222 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHH-HHHhCCCccCC----CCCCCCeEEEEEecCeeeeccccccc
Confidence 87788777777654 45678999999999763 333 33443221110 000000000000 0000011111
Q ss_pred HHHHHHHHH-hccCCeEEEEecchhHHHHHHHHHHcc--------------------------CCccccccCCCHHHHHH
Q 007106 332 SIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAKS--------------------------YNCEPLHGDISQSQRER 384 (618)
Q Consensus 332 ~~l~~ll~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~--------------------------~~~~~lhg~~~~~~r~~ 384 (618)
..+..++.+ ...++++||||++++.++.++..|.+. ..+..+|++|++++|+.
T Consensus 223 ~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ 302 (674)
T PRK01172 223 VDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRF 302 (674)
T ss_pred ccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHH
Confidence 112333333 345789999999999999999888542 13567899999999999
Q ss_pred HHHHHhcCCccEEEEccccccCCCCCCccEEEEcCC---------CCChhHHHHhhhccCCCCC--cceEEEEecch
Q 007106 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYEL---------PNTSETFVHRTGRTGRAGK--KGSAILIYTDQ 450 (618)
Q Consensus 385 i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~---------p~~~~~~~Qr~GR~gR~g~--~g~~~~~~~~~ 450 (618)
+++.|++|.++|||||+++++|||+|+.. ||+.+. |.+..+|.||+|||||.|. .|.+++++...
T Consensus 303 ve~~f~~g~i~VLvaT~~la~Gvnipa~~-VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 303 IEEMFRNRYIKVIVATPTLAAGVNLPARL-VIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred HHHHHHcCCCeEEEecchhhccCCCcceE-EEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 99999999999999999999999999864 444443 4578899999999999874 56677776543
No 51
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=7.7e-41 Score=360.47 Aligned_cols=340 Identities=23% Similarity=0.354 Sum_probs=266.1
Q ss_pred CCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHH
Q 007106 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (618)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~L 185 (618)
+++.+.++|+.+ |..|||.|.+||+.+.+++|+||+||||||||+++++|++..+.+.. ......+..+|||+|.++|
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~-~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG-KGKLEDGIYALYISPLKAL 85 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc-CCCCCCceEEEEeCcHHHH
Confidence 689999999888 99999999999999999999999999999999999999999998853 1122346789999999999
Q ss_pred HHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcC--CCCCCccEEEEchhhhhccCC
Q 007106 186 AKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA--LNLSEVQFVVLDEADQMLSVG 261 (618)
Q Consensus 186 a~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~--~~l~~~~~vViDEaH~~~~~~ 261 (618)
.+.+.+++..+.. ++.+.+.+|.++..++.+..++.+||+|+||+.|.-++.... -.+.++.+|||||+|.+.+..
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 9999999987653 566788899999999999999999999999999987775432 248899999999999998776
Q ss_pred cHHHHHHHHHhCC---CCCcEEEEEecCChHHHHHHHHhccCCc-eEeeccCCcccccCCeEEEEEecc----CcchhHH
Q 007106 262 FAEDVEVILERLP---QNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATS----MYEKPSI 333 (618)
Q Consensus 262 ~~~~~~~il~~l~---~~~~~l~lSAT~~~~~~~~~~~~l~~~~-~i~~~~~~~~~~~~~~~~~~~~~~----~~~k~~~ 333 (618)
.+.++.-.+.++. .+.|.|.+|||..+. .....|+.-.. ...++.....+. ..+........ .......
T Consensus 166 RG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~--~~varfL~g~~~~~~Iv~~~~~k~-~~i~v~~p~~~~~~~~~~~~~~ 242 (814)
T COG1201 166 RGVQLALSLERLRELAGDFQRIGLSATVGPP--EEVAKFLVGFGDPCEIVDVSAAKK-LEIKVISPVEDLIYDEELWAAL 242 (814)
T ss_pred cchhhhhhHHHHHhhCcccEEEeehhccCCH--HHHHHHhcCCCCceEEEEcccCCc-ceEEEEecCCccccccchhHHH
Confidence 6666555554442 388999999999753 23334443221 222221111111 11111111111 1111223
Q ss_pred HHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc--CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCC
Q 007106 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS--YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN 411 (618)
Q Consensus 334 l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~ 411 (618)
+..+.+...+...+|||+||+..++.++..|++. ..+..+||.++.++|..++++|++|+.+++|||+.++-|||+.+
T Consensus 243 ~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~ 322 (814)
T COG1201 243 YERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGD 322 (814)
T ss_pred HHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCC
Confidence 3333333344568999999999999999999876 58889999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCChhHHHHhhhccCC-CCCcceEEEEecch
Q 007106 412 VDLIIHYELPNTSETFVHRTGRTGR-AGKKGSAILIYTDQ 450 (618)
Q Consensus 412 ~~~VI~~~~p~~~~~~~Qr~GR~gR-~g~~g~~~~~~~~~ 450 (618)
++.||++..|.++..++||+||+|. .+...+.+++..+.
T Consensus 323 vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r 362 (814)
T COG1201 323 IDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDR 362 (814)
T ss_pred ceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCH
Confidence 9999999999999999999999986 57777777777663
No 52
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=3.6e-40 Score=357.32 Aligned_cols=317 Identities=21% Similarity=0.227 Sum_probs=234.6
Q ss_pred HHHHHHH-cCCCCChHHHHHHHHHHhCCC-CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEE-EEcCcHHHH
Q 007106 110 IVAALAR-RGISKLFPIQKAVLEPAMQGR-DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL-VLAPTRELA 186 (618)
Q Consensus 110 l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~-~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~l-il~Pt~~La 186 (618)
+.+.++. .+|. |+|||+++++.++.++ ++++++|||||||.++.++++... . ....++.| +++||++|+
T Consensus 4 f~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~-~------~~~~~~rLv~~vPtReLa 75 (844)
T TIGR02621 4 FDEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE-I------GAKVPRRLVYVVNRRTVV 75 (844)
T ss_pred HHHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc-c------cccccceEEEeCchHHHH
Confidence 3444544 4777 9999999999999998 588899999999987655544221 1 11234445 577999999
Q ss_pred HHHHHHHHHhCC-------------------------CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCC
Q 007106 187 KQVEKEFHESAP-------------------------SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL 241 (618)
Q Consensus 187 ~q~~~~l~~~~~-------------------------~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~ 241 (618)
.|+++.+.++.. .+++.+++|+.+...+...+..+++|||+|++.+. +..+
T Consensus 76 ~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~----sr~L 151 (844)
T TIGR02621 76 DQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIG----SRLL 151 (844)
T ss_pred HHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHc----CCcc
Confidence 999999887653 25678889999998999999889999999976553 3222
Q ss_pred ----------------CCCCccEEEEchhhhhccCCcHHHHHHHHHhC--CC---CCcEEEEEecCChHHHHHHHHhccC
Q 007106 242 ----------------NLSEVQFVVLDEADQMLSVGFAEDVEVILERL--PQ---NRQSMMFSATMPPWIRSLTNKYLKN 300 (618)
Q Consensus 242 ----------------~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l--~~---~~~~l~lSAT~~~~~~~~~~~~l~~ 300 (618)
.+.+++++|+|||| ++++|...+..|++.+ ++ .+|+++||||++..+..+...++.+
T Consensus 152 ~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~ 229 (844)
T TIGR02621 152 FSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAE 229 (844)
T ss_pred ccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccC
Confidence 26789999999999 6778999999999975 33 2699999999998888877777767
Q ss_pred CceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHH-HH-hccCCeEEEEecchhHHHHHHHHHHccCCccccccCCC
Q 007106 301 PLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI-TE-HAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDIS 378 (618)
Q Consensus 301 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll-~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~lhg~~~ 378 (618)
+..+.+... ......+.++ +......+...+...+ .. ...++++||||++++.++.+++.|.+. ....+||+|+
T Consensus 230 p~~i~V~~~--~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~-g~~lLHG~m~ 305 (844)
T TIGR02621 230 DYKHPVLKK--RLAAKKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKE-KFELLTGTLR 305 (844)
T ss_pred Cceeecccc--cccccceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhc-CCeEeeCCCC
Confidence 665544221 1122222333 2222222332222211 11 124578999999999999999999764 2388999999
Q ss_pred HHHHH-----HHHHHHhc----CC-------ccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcce
Q 007106 379 QSQRE-----RTLSAFRD----GR-------FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGS 442 (618)
Q Consensus 379 ~~~r~-----~i~~~f~~----g~-------~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~ 442 (618)
+.+|+ .+++.|++ ++ ..|||||+++++||||+. ++||++..| ++.|+||+||++|.|+.+.
T Consensus 306 q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~ 382 (844)
T TIGR02621 306 GAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQA 382 (844)
T ss_pred HHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCC
Confidence 99999 78999987 43 689999999999999975 889987766 6899999999999987533
Q ss_pred E-EEEe
Q 007106 443 A-ILIY 447 (618)
Q Consensus 443 ~-~~~~ 447 (618)
+ +.++
T Consensus 383 ~~i~vv 388 (844)
T TIGR02621 383 CQIAVV 388 (844)
T ss_pred ceEEEE
Confidence 3 4443
No 53
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.8e-40 Score=340.97 Aligned_cols=324 Identities=23% Similarity=0.381 Sum_probs=253.3
Q ss_pred HHHHH-cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHH
Q 007106 112 AALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (618)
Q Consensus 112 ~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 190 (618)
..|+. .++..+++-|.++|..+++++|+|+..|||.||++||.+|++-. ...+|||.|..+|.....
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------------~G~TLVVSPLiSLM~DQV 74 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------------EGLTLVVSPLISLMKDQV 74 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------------CCCEEEECchHHHHHHHH
Confidence 44544 58999999999999999999999999999999999999998755 347999999999999999
Q ss_pred HHHHHhCCCCcEEEEEcCcchhhhhHHhh---c-CCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCC--cHH
Q 007106 191 KEFHESAPSLDTICVYGGTPISHQMRALD---Y-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG--FAE 264 (618)
Q Consensus 191 ~~l~~~~~~~~~~~~~g~~~~~~~~~~l~---~-~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~--~~~ 264 (618)
+.++... +.+..+.+..+..++...+. . ..++++.+|++|..-...+.+.-..+.++||||||++.+|+ |.+
T Consensus 75 ~~l~~~G--i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP 152 (590)
T COG0514 75 DQLEAAG--IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRP 152 (590)
T ss_pred HHHHHcC--ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCH
Confidence 9998873 67777776655444433322 2 37999999999964433333335578899999999999996 777
Q ss_pred HHHHHH---HhCCCCCcEEEEEecCChHHHHHHHHhccCCc--eEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHH
Q 007106 265 DVEVIL---ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPL--TVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339 (618)
Q Consensus 265 ~~~~il---~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~ 339 (618)
.+..+- ..++ ++.++++|||.++.+...+...|.... .+.. ....+.+...+ . .....+... . .+.
T Consensus 153 ~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~-sfdRpNi~~~v--~---~~~~~~~q~-~-fi~ 223 (590)
T COG0514 153 DYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRG-SFDRPNLALKV--V---EKGEPSDQL-A-FLA 223 (590)
T ss_pred hHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEe-cCCCchhhhhh--h---hcccHHHHH-H-HHH
Confidence 766654 4444 889999999999998887776654332 2221 11111111111 1 111111222 2 333
Q ss_pred H--hccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEE
Q 007106 340 E--HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLII 416 (618)
Q Consensus 340 ~--~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI 416 (618)
+ .......||||.|++.++.+++.|... +.+..+|++|+.++|+.+.+.|..++.+|+|||.++++|||.||+++||
T Consensus 224 ~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfVi 303 (590)
T COG0514 224 TVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVI 303 (590)
T ss_pred hhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEE
Confidence 2 334567899999999999999999765 9999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHH
Q 007106 417 HYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458 (618)
Q Consensus 417 ~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 458 (618)
||++|.+++.|.|.+|||||.|.+..|++++.+.|....+.+
T Consensus 304 H~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~ 345 (590)
T COG0514 304 HYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYL 345 (590)
T ss_pred EecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHH
Confidence 999999999999999999999999999999999886654443
No 54
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.7e-39 Score=371.57 Aligned_cols=323 Identities=22% Similarity=0.318 Sum_probs=231.6
Q ss_pred EEccCCChhHHHHHHHHHHHHHHHhhhc----CCCCCCeEEEEcCcHHHHHHHHHHHHHh--------------CCCCcE
Q 007106 141 GRARTGTGKTLAFGIPILDKIIKFNEKH----GRGRNPLCLVLAPTRELAKQVEKEFHES--------------APSLDT 202 (618)
Q Consensus 141 l~~~tGsGKT~~~l~~~l~~i~~~~~~~----~~~~~~~~lil~Pt~~La~q~~~~l~~~--------------~~~~~~ 202 (618)
|++|||||||++|++|++..++...... ....+.++|||+|+++|++|++++++.. ..++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999999987642110 1123679999999999999999988641 125677
Q ss_pred EEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhc-CCCCCCccEEEEchhhhhccCCcHHH----HHHHHHhCCCCC
Q 007106 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDEADQMLSVGFAED----VEVILERLPQNR 277 (618)
Q Consensus 203 ~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~-~~~l~~~~~vViDEaH~~~~~~~~~~----~~~il~~l~~~~ 277 (618)
.+.+|+.+..++.+.+++.++|||+||++|..++.+. ...++++++|||||+|.+.+..++.+ +..+...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 8889999888887778888999999999998877543 23589999999999999987654444 444445556788
Q ss_pred cEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcc---------------------hhHHHHH
Q 007106 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE---------------------KPSIIGQ 336 (618)
Q Consensus 278 ~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------------------k~~~l~~ 336 (618)
|+|++|||+++. .++ ..|+.....+.++...... ...+... ++..... .......
T Consensus 161 QrIgLSATI~n~-eev-A~~L~g~~pv~Iv~~~~~r-~~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~ 236 (1490)
T PRK09751 161 QRIGLSATVRSA-SDV-AAFLGGDRPVTVVNPPAMR-HPQIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIETG 236 (1490)
T ss_pred eEEEEEeeCCCH-HHH-HHHhcCCCCEEEECCCCCc-ccceEEE-EecCchhhccccccccccccchhhhhhhhHHHHHH
Confidence 999999999873 333 3555432112222211111 1112211 1111100 0111223
Q ss_pred HHHHhccCCeEEEEecchhHHHHHHHHHHccC----------------------------------CccccccCCCHHHH
Q 007106 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAKSY----------------------------------NCEPLHGDISQSQR 382 (618)
Q Consensus 337 ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~----------------------------------~~~~lhg~~~~~~r 382 (618)
++.......++||||||+..|+.++..|++.. .+..+||+|++++|
T Consensus 237 il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR 316 (1490)
T PRK09751 237 ILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQR 316 (1490)
T ss_pred HHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHH
Confidence 44444456799999999999999999886431 14578999999999
Q ss_pred HHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCC-CCcceEEEEecchhHHHHH---HH
Q 007106 383 ERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRA-GKKGSAILIYTDQQARQVK---SI 458 (618)
Q Consensus 383 ~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~-g~~g~~~~~~~~~~~~~~~---~l 458 (618)
..+++.|++|++++||||++++.||||+++++||+++.|.++.+|+||+||+||. +..+.++++....+ ..++ .+
T Consensus 317 ~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~r~-dlle~~~~v 395 (1490)
T PRK09751 317 AITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTRR-DLVDSAVIV 395 (1490)
T ss_pred HHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCcHH-HHHhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999996 34455554443322 1121 24
Q ss_pred HHHhCCCccc
Q 007106 459 ERDVGCRFTQ 468 (618)
Q Consensus 459 ~~~l~~~~~~ 468 (618)
+..++..+++
T Consensus 396 e~~l~g~iE~ 405 (1490)
T PRK09751 396 ECMFAGRLEN 405 (1490)
T ss_pred HHHhcCCCCc
Confidence 4555555554
No 55
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=6.8e-38 Score=338.45 Aligned_cols=314 Identities=18% Similarity=0.243 Sum_probs=227.0
Q ss_pred HHHHHHHHHHhCCCCEEEEccCCChhHHHH---------HHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007106 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAF---------GIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (618)
Q Consensus 124 ~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~---------l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~ 194 (618)
.+|+++++.+++++++|++|+||||||.+. +.+.+..+.+.. +.....+++|++||++||.|+..++.
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~---~~~~~~~ilvt~PrreLa~qi~~~i~ 243 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID---PNFIERPIVLSLPRVALVRLHSITLL 243 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc---cccCCcEEEEECcHHHHHHHHHHHHH
Confidence 578999999999999999999999999873 223333321100 12235689999999999999999987
Q ss_pred HhC-----CCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHH
Q 007106 195 ESA-----PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269 (618)
Q Consensus 195 ~~~-----~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~i 269 (618)
+.. ....+.+.+++... ..........+|+|+|+.... ..+.++++|||||||++... .+.+..+
T Consensus 244 ~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~l-------~~L~~v~~VVIDEaHEr~~~--~DllL~l 313 (675)
T PHA02653 244 KSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLTL-------NKLFDYGTVIIDEVHEHDQI--GDIIIAV 313 (675)
T ss_pred HHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcccc-------cccccCCEEEccccccCccc--hhHHHHH
Confidence 643 23456777888762 222222235799999965211 24788999999999998764 3555555
Q ss_pred HHhCC-CCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEecc----------CcchhHHHHHHH
Q 007106 270 LERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS----------MYEKPSIIGQLI 338 (618)
Q Consensus 270 l~~l~-~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~----------~~~k~~~l~~ll 338 (618)
+..+. ..+|+++||||+++++..+ ..++.++..+.+.. .....+++++.... ...+...+..+.
T Consensus 314 lk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g----rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~ 388 (675)
T PHA02653 314 ARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG----GTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALK 388 (675)
T ss_pred HHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC----CcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHH
Confidence 55443 3459999999999887766 57888887776532 11223333333221 111222232222
Q ss_pred HHh-ccCCeEEEEecchhHHHHHHHHHHcc---CCccccccCCCHHHHHHHHHHH-hcCCccEEEEccccccCCCCCCcc
Q 007106 339 TEH-AKGGKCIVFTQTKRDADRLAHAMAKS---YNCEPLHGDISQSQRERTLSAF-RDGRFNILIATDVAARGLDVPNVD 413 (618)
Q Consensus 339 ~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~lhg~~~~~~r~~i~~~f-~~g~~~vLVaT~~~~~Gidi~~~~ 413 (618)
... ..++++||||+++++++.+++.|.+. +.+..+||++++. ++++++| ++++.+|||||+++++|||||+++
T Consensus 389 ~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~ 466 (675)
T PHA02653 389 KYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNAT 466 (675)
T ss_pred HhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCee
Confidence 221 23568999999999999999999763 7899999999975 4667777 689999999999999999999999
Q ss_pred EEEEcC---CCC---------ChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHH
Q 007106 414 LIIHYE---LPN---------TSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458 (618)
Q Consensus 414 ~VI~~~---~p~---------~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 458 (618)
+||+++ .|. +.++|+||+||+||. ++|.|+.++++.+...++.+
T Consensus 467 ~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri 522 (675)
T PHA02653 467 HVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRI 522 (675)
T ss_pred EEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHH
Confidence 999998 554 788999999999999 89999999998876444433
No 56
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=6.8e-38 Score=341.83 Aligned_cols=353 Identities=20% Similarity=0.299 Sum_probs=280.6
Q ss_pred CCccchhHHhhhhhccccccc---------cCCCCCCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCC---
Q 007106 69 LDFKSSIAWQHAQSAVDDYVA---------YDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--- 136 (618)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~--- 136 (618)
+..-....|+....-+.+.+. +.+....+.. .++.+.+.++.+...-.+.-|+-|..||+.+.++
T Consensus 536 L~kLG~~~W~k~K~K~~~~v~diA~eLi~lyA~R~~~~G~---af~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~ 612 (1139)
T COG1197 536 LHKLGGGAWKKAKAKARKKVRDIAAELIKLYAKRQAKKGF---AFPPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMES 612 (1139)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---CCCCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhcc
Confidence 344455678876443332221 2222333333 5667888899998887788999999999999875
Q ss_pred ---CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcE--EEEEcCcch
Q 007106 137 ---RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPI 211 (618)
Q Consensus 137 ---~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~--~~~~g~~~~ 211 (618)
+|.|||+++|.|||.+++-+++..++. +.+|.|+|||..||+|+++.|++.|.+..+ ..+.--.+.
T Consensus 613 ~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~---------GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~ 683 (1139)
T COG1197 613 GKPMDRLICGDVGFGKTEVAMRAAFKAVMD---------GKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSA 683 (1139)
T ss_pred CCcchheeecCcCCcHHHHHHHHHHHHhcC---------CCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCH
Confidence 689999999999999999999998866 889999999999999999999998875544 444333333
Q ss_pred hhhh---HHhhc-CCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCC
Q 007106 212 SHQM---RALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (618)
Q Consensus 212 ~~~~---~~l~~-~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~ 287 (618)
+++. +.++. ..||||+|+. +....+.++++.+|||||-|+ |+...++-++.++.+..++-|||||.
T Consensus 684 kE~~~il~~la~G~vDIvIGTHr-----LL~kdv~FkdLGLlIIDEEqR-----FGVk~KEkLK~Lr~~VDvLTLSATPI 753 (1139)
T COG1197 684 KEQKEILKGLAEGKVDIVIGTHR-----LLSKDVKFKDLGLLIIDEEQR-----FGVKHKEKLKELRANVDVLTLSATPI 753 (1139)
T ss_pred HHHHHHHHHHhcCCccEEEechH-----hhCCCcEEecCCeEEEechhh-----cCccHHHHHHHHhccCcEEEeeCCCC
Confidence 3333 33344 4899999954 444556799999999999999 89999999999999999999999999
Q ss_pred hHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc
Q 007106 288 PWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS 367 (618)
Q Consensus 288 ~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~ 367 (618)
|.+..+.-.-+.+...+..-+. ....+...... .+...+-..++.++..++++...+|.++.++.+++.|.+.
T Consensus 754 PRTL~Msm~GiRdlSvI~TPP~------~R~pV~T~V~~-~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~L 826 (1139)
T COG1197 754 PRTLNMSLSGIRDLSVIATPPE------DRLPVKTFVSE-YDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLREL 826 (1139)
T ss_pred cchHHHHHhcchhhhhccCCCC------CCcceEEEEec-CChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHh
Confidence 9888888777777766654221 22222222222 2233344556677888999999999999999999999875
Q ss_pred ---CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCCC-ChhHHHHhhhccCCCCCcceE
Q 007106 368 ---YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN-TSETFVHRTGRTGRAGKKGSA 443 (618)
Q Consensus 368 ---~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~-~~~~~~Qr~GR~gR~g~~g~~ 443 (618)
.++.+.||.|+..+-+++|..|.+++++|||||.++|.|||||+++++|+.++.. .+.+++|.+||+||..+.++|
T Consensus 827 VPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYA 906 (1139)
T COG1197 827 VPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYA 906 (1139)
T ss_pred CCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEE
Confidence 4588899999999999999999999999999999999999999999999999987 999999999999999999999
Q ss_pred EEEecch
Q 007106 444 ILIYTDQ 450 (618)
Q Consensus 444 ~~~~~~~ 450 (618)
|+++.+.
T Consensus 907 Yfl~p~~ 913 (1139)
T COG1197 907 YFLYPPQ 913 (1139)
T ss_pred EEeecCc
Confidence 9999864
No 57
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.8e-37 Score=303.22 Aligned_cols=320 Identities=22% Similarity=0.286 Sum_probs=239.9
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC--
Q 007106 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA-- 197 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~-- 197 (618)
.+++.||......++.. |+||+.|||.|||+++++-+...+.. . +.++|+++||+-|+.|+++.+.+.+
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~-------~-~~kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRW-------F-GGKVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHh-------c-CCeEEEecCCchHHHHHHHHHHHHhCC
Confidence 46899999988877775 99999999999999998887776644 1 2389999999999999999999976
Q ss_pred CCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCC
Q 007106 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277 (618)
Q Consensus 198 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~ 277 (618)
|...++.++|......+...+. ...|+|+||+.+.+.+....+++.++.++|+||||+-....-...+.+.+-+...++
T Consensus 85 p~~~i~~ltGev~p~~R~~~w~-~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~ 163 (542)
T COG1111 85 PEDEIAALTGEVRPEEREELWA-KKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNP 163 (542)
T ss_pred ChhheeeecCCCChHHHHHHHh-hCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCc
Confidence 4456788888887766655544 469999999999999999999999999999999999877656666666666667788
Q ss_pred cEEEEEecCChHH---HHHHHHhccCCceEeeccCCccc-----------------------------------------
Q 007106 278 QSMMFSATMPPWI---RSLTNKYLKNPLTVDLVGDSDQK----------------------------------------- 313 (618)
Q Consensus 278 ~~l~lSAT~~~~~---~~~~~~~l~~~~~i~~~~~~~~~----------------------------------------- 313 (618)
.+|+|||||-... .+....+.-....+....+.+..
T Consensus 164 ~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g 243 (542)
T COG1111 164 LILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELG 243 (542)
T ss_pred eEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999994322 22222211000000000000000
Q ss_pred ----------------------------------------------------------------------cc--------
Q 007106 314 ----------------------------------------------------------------------LA-------- 315 (618)
Q Consensus 314 ----------------------------------------------------------------------~~-------- 315 (618)
..
T Consensus 244 ~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~ 323 (542)
T COG1111 244 VIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKS 323 (542)
T ss_pred ceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHH
Confidence 00
Q ss_pred --CC---------eEEEEEeccCcchhHHHHHHHHHhc---cCCeEEEEecchhHHHHHHHHHHccCCcc--cc------
Q 007106 316 --DG---------ISLYSIATSMYEKPSIIGQLITEHA---KGGKCIVFTQTKRDADRLAHAMAKSYNCE--PL------ 373 (618)
Q Consensus 316 --~~---------~~~~~~~~~~~~k~~~l~~ll~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~--~l------ 373 (618)
.. ........-.+.|...+.+++++.. .+.++|||++.++.++.+.++|.+..... .+
T Consensus 324 l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r 403 (542)
T COG1111 324 LLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASR 403 (542)
T ss_pred HhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecccc
Confidence 00 0000001111224444555655543 35699999999999999999997752222 11
Q ss_pred --ccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecch
Q 007106 374 --HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 374 --hg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
..+|+|.++.+++++|++|+++|||||++.|+|||||+++.||.|++-.|+..++||.||+||. ++|.++++++..
T Consensus 404 ~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 404 EGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred ccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 2579999999999999999999999999999999999999999999999999999999999999 889999999876
No 58
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=4.5e-37 Score=339.94 Aligned_cols=305 Identities=18% Similarity=0.279 Sum_probs=230.6
Q ss_pred HHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC-CCc-
Q 007106 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-SLD- 201 (618)
Q Consensus 124 ~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~-~~~- 201 (618)
.+-.+.+..+.+++++|++++||||||+++.+++++... .+++++|++|++++|.|+++.+.+.+. .+.
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~ 75 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQ 75 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCc
Confidence 444566777778889999999999999999999987752 146899999999999999999865442 222
Q ss_pred -EEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhh-hhccCCcHHH-HHHHHHhCCCCCc
Q 007106 202 -TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD-QMLSVGFAED-VEVILERLPQNRQ 278 (618)
Q Consensus 202 -~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH-~~~~~~~~~~-~~~il~~l~~~~~ 278 (618)
+....... .......+|+|+|++.|++.+..+ ..+.++++|||||+| ++++.++... +..+...++++.|
T Consensus 76 ~VGy~vr~~------~~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlq 148 (819)
T TIGR01970 76 TVGYRVRGE------NKVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLK 148 (819)
T ss_pred EEEEEEccc------cccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCce
Confidence 21111111 122345789999999999988764 468999999999999 5777665443 3456666788999
Q ss_pred EEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchh-----HHHHHHHHHhccCCeEEEEecc
Q 007106 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP-----SIIGQLITEHAKGGKCIVFTQT 353 (618)
Q Consensus 279 ~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~l~~ll~~~~~~~~~lVf~~~ 353 (618)
+|+||||++... +..++.++..+...... ..+++++......++. ..+..++.+ ..+++|||+++
T Consensus 149 lIlmSATl~~~~---l~~~l~~~~vI~~~gr~-----~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg 218 (819)
T TIGR01970 149 ILAMSATLDGER---LSSLLPDAPVVESEGRS-----FPVEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGSILVFLPG 218 (819)
T ss_pred EEEEeCCCCHHH---HHHHcCCCcEEEecCcc-----eeeeeEEeecchhhhHHHHHHHHHHHHHHh--cCCcEEEEECC
Confidence 999999999753 35667666555432211 1233444333322221 122333322 35789999999
Q ss_pred hhHHHHHHHHHHc----cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCCCC------
Q 007106 354 KRDADRLAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNT------ 423 (618)
Q Consensus 354 ~~~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~------ 423 (618)
+++++.+++.|.+ .+.+..+||+|++++|+++++.|++|+.+|||||+++++|||||++++||+++.++.
T Consensus 219 ~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~ 298 (819)
T TIGR01970 219 QAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPK 298 (819)
T ss_pred HHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccc
Confidence 9999999999975 477889999999999999999999999999999999999999999999999998752
Q ss_pred ------------hhHHHHhhhccCCCCCcceEEEEecchhHHHH
Q 007106 424 ------------SETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455 (618)
Q Consensus 424 ------------~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~ 455 (618)
-.+++||+||+||. ++|.||.++++.+...+
T Consensus 299 ~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~l 341 (819)
T TIGR01970 299 TGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQRL 341 (819)
T ss_pred cCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHhh
Confidence 34589999999999 89999999998765443
No 59
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2.7e-37 Score=320.44 Aligned_cols=300 Identities=19% Similarity=0.252 Sum_probs=210.4
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhh----
Q 007106 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH---- 213 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~---- 213 (618)
++++.+|||||||++|+++++..+.+ ....+++|++|+++|+.|+++.+.+++.. .+..+++......
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~~~~~ 72 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-------QKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKRIKEM 72 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-------CCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHHHhcc
Confidence 58999999999999999999987543 22568999999999999999999998653 3444444332110
Q ss_pred -------h-hHHh-h-----cCCCEEEEChHHHHHHHHhcC----CCC--CCccEEEEchhhhhccCCcHHHHHHHHHhC
Q 007106 214 -------Q-MRAL-D-----YGVDAVVGTPGRVIDLIKRNA----LNL--SEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (618)
Q Consensus 214 -------~-~~~l-~-----~~~~Ilv~T~~~l~~~l~~~~----~~l--~~~~~vViDEaH~~~~~~~~~~~~~il~~l 273 (618)
. .... . ...+|+|+||++++..+.... ..+ ...++|||||+|.+.+..+.. +..++..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l 151 (358)
T TIGR01587 73 GDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVL 151 (358)
T ss_pred CCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHH
Confidence 0 0000 1 136899999999987765421 111 123789999999988754333 55555555
Q ss_pred C-CCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHHhccCCeEEEEec
Q 007106 274 P-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQ 352 (618)
Q Consensus 274 ~-~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~ 352 (618)
+ .+.|+++||||+|+.+.++...+...+............. ..............+...+..+++...++.++||||+
T Consensus 152 ~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~ 230 (358)
T TIGR01587 152 KDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRF-ERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVN 230 (358)
T ss_pred HHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcccccc-ccccceeeccccccCHHHHHHHHHHhhCCCeEEEEEC
Confidence 4 5789999999999877666655433221111100000000 0111111122223456667777776666789999999
Q ss_pred chhHHHHHHHHHHccC---CccccccCCCHHHHHHH----HHHHhcCCccEEEEccccccCCCCCCccEEEEcCCCCChh
Q 007106 353 TKRDADRLAHAMAKSY---NCEPLHGDISQSQRERT----LSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSE 425 (618)
Q Consensus 353 ~~~~~~~l~~~L~~~~---~~~~lhg~~~~~~r~~i----~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~ 425 (618)
+++.++.+++.|.+.. .+..+||++++.+|.++ ++.|++++..|||||+++++|||++ +++||++..| ++
T Consensus 231 t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~ 307 (358)
T TIGR01587 231 TVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--ID 307 (358)
T ss_pred CHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HH
Confidence 9999999999997653 48899999999999764 8899999999999999999999995 8899988766 78
Q ss_pred HHHHhhhccCCCCCc----ceEEEEecch
Q 007106 426 TFVHRTGRTGRAGKK----GSAILIYTDQ 450 (618)
Q Consensus 426 ~~~Qr~GR~gR~g~~----g~~~~~~~~~ 450 (618)
.|+||+||+||.|+. +.++++....
T Consensus 308 ~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 308 SLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred HHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 999999999998754 3566666543
No 60
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.6e-36 Score=336.55 Aligned_cols=304 Identities=20% Similarity=0.285 Sum_probs=226.8
Q ss_pred hHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC-CC-
Q 007106 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-SL- 200 (618)
Q Consensus 123 ~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~-~~- 200 (618)
..+-.+.+..+.+++++|++++||||||+++.+++++... ...+++|++||+++|.|+++.+.+.+. .+
T Consensus 7 ~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~---------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g 77 (812)
T PRK11664 7 AAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG---------INGKIIMLEPRRLAARNVAQRLAEQLGEKPG 77 (812)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC---------cCCeEEEECChHHHHHHHHHHHHHHhCcccC
Confidence 3444566777888899999999999999999998886531 135899999999999999999865432 22
Q ss_pred -cEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhh-hccCCcH-HHHHHHHHhCCCCC
Q 007106 201 -DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ-MLSVGFA-EDVEVILERLPQNR 277 (618)
Q Consensus 201 -~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~-~~~~~~~-~~~~~il~~l~~~~ 277 (618)
.+........ .......|+|+|+++|++.+..+ ..+.++++|||||+|. .++.++. ..+..++..++++.
T Consensus 78 ~~VGy~vr~~~------~~~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~l 150 (812)
T PRK11664 78 ETVGYRMRAES------KVGPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDL 150 (812)
T ss_pred ceEEEEecCcc------ccCCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccc
Confidence 2222222221 12234579999999999988764 4689999999999996 4444332 23455667778899
Q ss_pred cEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhH-----HHHHHHHHhccCCeEEEEec
Q 007106 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS-----IIGQLITEHAKGGKCIVFTQ 352 (618)
Q Consensus 278 ~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~-----~l~~ll~~~~~~~~~lVf~~ 352 (618)
|+|+||||++.. .+..++.++..+..... ...+++++.......+.. .+..++.+ ..+.+||||+
T Consensus 151 qlilmSATl~~~---~l~~~~~~~~~I~~~gr-----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlp 220 (812)
T PRK11664 151 KLLIMSATLDND---RLQQLLPDAPVIVSEGR-----SFPVERRYQPLPAHQRFDEAVARATAELLRQ--ESGSLLLFLP 220 (812)
T ss_pred eEEEEecCCCHH---HHHHhcCCCCEEEecCc-----cccceEEeccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEcC
Confidence 999999999874 23566666655543221 112334433333222221 22233322 3579999999
Q ss_pred chhHHHHHHHHHHc----cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCCCC-----
Q 007106 353 TKRDADRLAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNT----- 423 (618)
Q Consensus 353 ~~~~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~----- 423 (618)
++++++.+++.|.+ .+.+..+||+|++++|+++++.|++|+.+|||||+++++||||+++++||+++.++.
T Consensus 221 g~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~ 300 (812)
T PRK11664 221 GVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDP 300 (812)
T ss_pred CHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccc
Confidence 99999999999975 467888999999999999999999999999999999999999999999999877642
Q ss_pred -------------hhHHHHhhhccCCCCCcceEEEEecchhHH
Q 007106 424 -------------SETFVHRTGRTGRAGKKGSAILIYTDQQAR 453 (618)
Q Consensus 424 -------------~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 453 (618)
-++|.||+||+||. .+|.||.++++.+..
T Consensus 301 ~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 301 KTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAE 342 (812)
T ss_pred cCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHh
Confidence 35799999999999 799999999987654
No 61
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=9.2e-37 Score=304.60 Aligned_cols=338 Identities=24% Similarity=0.349 Sum_probs=266.8
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHH-HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCe
Q 007106 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~-i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~ 175 (618)
+....+++++++++.+.|+..++.+|.|+|..++.+ ++.+.|.++..+|.||||++.-++-+..++. .+.+
T Consensus 192 ~r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~--------~g~K 263 (830)
T COG1202 192 ERVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS--------GGKK 263 (830)
T ss_pred ccccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh--------CCCe
Confidence 445678999999999999999999999999999986 7889999999999999999998888877765 3678
Q ss_pred EEEEcCcHHHHHHHHHHHHHhCCCCc--EEEEEcCcchhhhhH----HhhcCCCEEEEChHHHHHHHHhcCCCCCCccEE
Q 007106 176 CLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMR----ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249 (618)
Q Consensus 176 ~lil~Pt~~La~q~~~~l~~~~~~~~--~~~~~g~~~~~~~~~----~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~v 249 (618)
.|+++|..+||+|.+++|++.+..+. +.+-.|...+....+ ....++||||+|++-+..++... ..+.++.+|
T Consensus 264 mlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtV 342 (830)
T COG1202 264 MLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTV 342 (830)
T ss_pred EEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceE
Confidence 99999999999999999998776554 333444443333322 12235899999999998888876 568999999
Q ss_pred EEchhhhhccCCcHHHHHHHHHhC---CCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEecc
Q 007106 250 VLDEADQMLSVGFAEDVEVILERL---PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326 (618)
Q Consensus 250 ViDEaH~~~~~~~~~~~~~il~~l---~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 326 (618)
||||+|.+.+...+..+.-++.++ -+..|+|.+|||.-++ .+++..+-.....++ . .+...-.+..+...
T Consensus 343 VIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~-----~-RPVplErHlvf~~~ 415 (830)
T COG1202 343 VIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYD-----E-RPVPLERHLVFARN 415 (830)
T ss_pred EeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeec-----C-CCCChhHeeeeecC
Confidence 999999988877777766666554 4689999999998654 344444433332221 1 11122233445556
Q ss_pred CcchhHHHHHHHHHhcc-------CCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCCccEEE
Q 007106 327 MYEKPSIIGQLITEHAK-------GGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398 (618)
Q Consensus 327 ~~~k~~~l~~ll~~~~~-------~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLV 398 (618)
..+|..++..+++.... .+++|||+++++.|..++..|.. .+++..+|++++..+|+.++..|.++++.++|
T Consensus 416 e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VV 495 (830)
T COG1202 416 ESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVV 495 (830)
T ss_pred chHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEe
Confidence 77888888888765321 46999999999999999999964 59999999999999999999999999999999
Q ss_pred EccccccCCCCCCccEEEE---cCCCC-ChhHHHHhhhccCCCC--CcceEEEEecch
Q 007106 399 ATDVAARGLDVPNVDLIIH---YELPN-TSETFVHRTGRTGRAG--KKGSAILIYTDQ 450 (618)
Q Consensus 399 aT~~~~~Gidi~~~~~VI~---~~~p~-~~~~~~Qr~GR~gR~g--~~g~~~~~~~~~ 450 (618)
+|-+++.|+|+|.-.+++. +...| ++.+|.|+.|||||.+ ..|++|++..+.
T Consensus 496 TTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 496 TTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred ehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999999999997655442 34455 9999999999999964 678899888654
No 62
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=9.8e-36 Score=319.02 Aligned_cols=305 Identities=15% Similarity=0.179 Sum_probs=216.6
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC
Q 007106 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (618)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~ 198 (618)
...|+++|+++++.++.+.+.++++|||+|||+++...+ ..+.+ ....++||||||++|+.||.+++.++..
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~-------~~~~~vLilvpt~eL~~Q~~~~l~~~~~ 183 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLE-------NYEGKVLIIVPTTSLVTQMIDDFVDYRL 183 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHh-------cCCCeEEEEECcHHHHHHHHHHHHHhcc
Confidence 357999999999999999999999999999998764422 22222 1134899999999999999999998653
Q ss_pred --CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCC
Q 007106 199 --SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (618)
Q Consensus 199 --~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~ 276 (618)
...+..+.++.... ...+|+|+|++++.+.... .+.++++||+||||++.. ..+..++..+++.
T Consensus 184 ~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~~---~~~~~~~iIvDEaH~~~~----~~~~~il~~~~~~ 249 (501)
T PHA02558 184 FPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPKE---WFDQFGMVIVDECHLFTG----KSLTSIITKLDNC 249 (501)
T ss_pred ccccceeEEecCcccC-------CCCCEEEeeHHHHhhchhh---hccccCEEEEEchhcccc----hhHHHHHHhhhcc
Confidence 23344455554321 3468999999999764422 367899999999999864 4567777778777
Q ss_pred CcEEEEEecCChHHHHHH--HHhccCCceEeeccCC--cccccCCeEEEE-----------------------EeccCcc
Q 007106 277 RQSMMFSATMPPWIRSLT--NKYLKNPLTVDLVGDS--DQKLADGISLYS-----------------------IATSMYE 329 (618)
Q Consensus 277 ~~~l~lSAT~~~~~~~~~--~~~l~~~~~i~~~~~~--~~~~~~~~~~~~-----------------------~~~~~~~ 329 (618)
.++++|||||++...... ..++. +....+.... ............ .......
T Consensus 250 ~~~lGLTATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (501)
T PHA02558 250 KFKFGLTGSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTK 328 (501)
T ss_pred ceEEEEeccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHH
Confidence 899999999975322111 11111 1111100000 000000000000 0011112
Q ss_pred hhHHHHHHHHHh-ccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEc-cccccC
Q 007106 330 KPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIAT-DVAARG 406 (618)
Q Consensus 330 k~~~l~~ll~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT-~~~~~G 406 (618)
+...+..++... ..+.+++|||.++++++.+++.|.+. .++..+||+|++++|+.+++.|++++..||||| +++++|
T Consensus 329 Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG 408 (501)
T PHA02558 329 RNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTG 408 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccc
Confidence 233333443333 24678999999999999999999764 889999999999999999999999999999998 899999
Q ss_pred CCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcce-EEEE
Q 007106 407 LDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGS-AILI 446 (618)
Q Consensus 407 idi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~-~~~~ 446 (618)
+|+|++++||++.++.+...|+||+||++|.+..+. |.++
T Consensus 409 ~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 409 ISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred cccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 999999999999999999999999999999865443 4444
No 63
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.3e-35 Score=325.02 Aligned_cols=334 Identities=22% Similarity=0.333 Sum_probs=252.8
Q ss_pred CCCCCHHHHHHHHHcCCCCChHHHHHHHHHHh-CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcC
Q 007106 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAM-QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (618)
Q Consensus 103 ~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~-~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~P 181 (618)
...+++.+.+.+...++.++.+.|+.++.... .++|+||++|||||||++++++++..+.+. +.++|+|||
T Consensus 13 ~~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--------~~k~vYivP 84 (766)
T COG1204 13 KVKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--------GGKVVYIVP 84 (766)
T ss_pred cccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--------CCcEEEEeC
Confidence 34578888888888899889999988887655 459999999999999999999999998762 468999999
Q ss_pred cHHHHHHHHHHHHHhC-CCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccC
Q 007106 182 TRELAKQVEKEFHESA-PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260 (618)
Q Consensus 182 t~~La~q~~~~l~~~~-~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~ 260 (618)
+++||++.+++++++- -++++...+++..... ....+++|||+||+++..++.+....+.++++|||||+|.+.+.
T Consensus 85 lkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~---~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~ 161 (766)
T COG1204 85 LKALAEEKYEEFSRLEELGIRVGISTGDYDLDD---ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDR 161 (766)
T ss_pred hHHHHHHHHHHhhhHHhcCCEEEEecCCcccch---hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCc
Confidence 9999999999999322 2578888888876444 12345799999999999998887777889999999999988887
Q ss_pred CcHHHHHHHHHhCCC---CCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEecc-------Ccch
Q 007106 261 GFAEDVEVILERLPQ---NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS-------MYEK 330 (618)
Q Consensus 261 ~~~~~~~~il~~l~~---~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------~~~k 330 (618)
..++.++.++.+++. .++++.+|||+|+. ..+..|+.-.......................... ....
T Consensus 162 ~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~--~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~ 239 (766)
T COG1204 162 TRGPVLESIVARMRRLNELIRIVGLSATLPNA--EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLID 239 (766)
T ss_pred ccCceehhHHHHHHhhCcceEEEEEeeecCCH--HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccch
Confidence 677888888777653 47999999999983 34445554332221111111111111111111111 1123
Q ss_pred hHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHc--------------------------------------cCCccc
Q 007106 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK--------------------------------------SYNCEP 372 (618)
Q Consensus 331 ~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~--------------------------------------~~~~~~ 372 (618)
...+..++..+..++++||||++++.+...++.|.. ...+..
T Consensus 240 ~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~Gvaf 319 (766)
T COG1204 240 NLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAF 319 (766)
T ss_pred HHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccc
Confidence 445566666777889999999999999888887762 012556
Q ss_pred cccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEE----EcC-----CCCChhHHHHhhhccCCCC--Ccc
Q 007106 373 LHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLII----HYE-----LPNTSETFVHRTGRTGRAG--KKG 441 (618)
Q Consensus 373 lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI----~~~-----~p~~~~~~~Qr~GR~gR~g--~~g 441 (618)
+|++++.++|+.+++.|++|.++|||||++++.|+|+|.-.+|| .|+ .+.+..+++|+.|||||.+ ..|
T Consensus 320 HhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G 399 (766)
T COG1204 320 HHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYG 399 (766)
T ss_pred cccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCC
Confidence 89999999999999999999999999999999999999766666 355 3447889999999999976 556
Q ss_pred eEEEEecc
Q 007106 442 SAILIYTD 449 (618)
Q Consensus 442 ~~~~~~~~ 449 (618)
.++++.+.
T Consensus 400 ~~~i~~~~ 407 (766)
T COG1204 400 EAIILATS 407 (766)
T ss_pred cEEEEecC
Confidence 67777633
No 64
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=7.1e-35 Score=333.29 Aligned_cols=302 Identities=22% Similarity=0.325 Sum_probs=225.6
Q ss_pred HHHHHHHHc-CCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHH
Q 007106 109 DIVAALARR-GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (618)
Q Consensus 109 ~l~~~l~~~-~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (618)
++.+.+++. ++ +|+++|+.+++.++.++|+++++|||+|||. +.++++..+.. .+.++|||+||++|+.
T Consensus 68 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~--------~g~~alIL~PTreLa~ 137 (1176)
T PRK09401 68 EFEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK--------KGKKSYIIFPTRLLVE 137 (1176)
T ss_pred HHHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh--------cCCeEEEEeccHHHHH
Confidence 344455444 55 7999999999999999999999999999996 44454444321 2678999999999999
Q ss_pred HHHHHHHHhCCC--CcEEEEEcCcch-----hhhhHHhh-cCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhcc
Q 007106 188 QVEKEFHESAPS--LDTICVYGGTPI-----SHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (618)
Q Consensus 188 q~~~~l~~~~~~--~~~~~~~g~~~~-----~~~~~~l~-~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~ 259 (618)
|+++.++++... +.+.++.++... ......+. ..++|+|+||++|.+.+. .+...++++|||||||++++
T Consensus 138 Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~ 215 (1176)
T PRK09401 138 QVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLK 215 (1176)
T ss_pred HHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhh
Confidence 999999998754 344555554431 22223334 358999999999998776 34556799999999999986
Q ss_pred -----------CCcH-HHHHHHHHhCCC------------------------CCcEEEEEecCChH-HHHHHHHhccCCc
Q 007106 260 -----------VGFA-EDVEVILERLPQ------------------------NRQSMMFSATMPPW-IRSLTNKYLKNPL 302 (618)
Q Consensus 260 -----------~~~~-~~~~~il~~l~~------------------------~~~~l~lSAT~~~~-~~~~~~~~l~~~~ 302 (618)
.+|. ..+..++..++. ..|++++|||+++. ++. .++.++.
T Consensus 216 ~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll 292 (1176)
T PRK09401 216 SSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELL 292 (1176)
T ss_pred cccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccc
Confidence 5664 567777777654 68999999999874 332 2333444
Q ss_pred eEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHHhccCCeEEEEecchhH---HHHHHHHHHcc-CCccccccCCC
Q 007106 303 TVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRD---ADRLAHAMAKS-YNCEPLHGDIS 378 (618)
Q Consensus 303 ~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~---~~~l~~~L~~~-~~~~~lhg~~~ 378 (618)
.+.+... .....++.+..+... ++...+..+++.. +..+||||++++. ++.+++.|... +++..+|++|
T Consensus 293 ~~~v~~~--~~~~rnI~~~yi~~~--~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l- 365 (1176)
T PRK09401 293 GFEVGSP--VFYLRNIVDSYIVDE--DSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF- 365 (1176)
T ss_pred eEEecCc--ccccCCceEEEEEcc--cHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-
Confidence 4443221 122234444444333 5666777777655 3589999999777 99999999764 9999999999
Q ss_pred HHHHHHHHHHHhcCCccEEEE----ccccccCCCCCC-ccEEEEcCCCC------ChhHHHHhhhccCC
Q 007106 379 QSQRERTLSAFRDGRFNILIA----TDVAARGLDVPN-VDLIIHYELPN------TSETFVHRTGRTGR 436 (618)
Q Consensus 379 ~~~r~~i~~~f~~g~~~vLVa----T~~~~~Gidi~~-~~~VI~~~~p~------~~~~~~Qr~GR~gR 436 (618)
++.+++|++|+++|||| |++++||||+|+ +++||||+.|. ..+.+.||++|+..
T Consensus 366 ----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 366 ----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred ----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 23459999999999999 699999999999 89999999998 56788999999864
No 65
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=4.8e-35 Score=341.18 Aligned_cols=327 Identities=17% Similarity=0.264 Sum_probs=243.1
Q ss_pred HHHHHHHHH-cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHH
Q 007106 108 QDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (618)
Q Consensus 108 ~~l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La 186 (618)
.++.+.|++ .++ +|+++|+++++.+++++++++++|||+|||++++++++.... .+.++|||+||++|+
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~---------~g~~aLVl~PTreLa 135 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL---------KGKKCYIILPTTLLV 135 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh---------cCCeEEEEECHHHHH
Confidence 455666765 788 699999999999999999999999999999966655543321 256899999999999
Q ss_pred HHHHHHHHHhCC----CCcEEEEEcCcchhhhhH---Hhhc-CCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhc
Q 007106 187 KQVEKEFHESAP----SLDTICVYGGTPISHQMR---ALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 187 ~q~~~~l~~~~~----~~~~~~~~g~~~~~~~~~---~l~~-~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~ 258 (618)
.|+++.++.++. .+.+..++++.+..++.. .+.. .++|||+||++|.+.+... . ..++++|||||||+|+
T Consensus 136 ~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 136 KQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFL 213 (1638)
T ss_pred HHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceecc
Confidence 999999998764 345566778877665533 3334 4899999999998766542 2 2679999999999998
Q ss_pred c-----------CCcHHHHHH----HHH----------------------hCCCCCc-EEEEEecCChHHHHHHHHhccC
Q 007106 259 S-----------VGFAEDVEV----ILE----------------------RLPQNRQ-SMMFSATMPPWIRSLTNKYLKN 300 (618)
Q Consensus 259 ~-----------~~~~~~~~~----il~----------------------~l~~~~~-~l~lSAT~~~~~~~~~~~~l~~ 300 (618)
+ ++|.+.+.. ++. .++...| ++++|||+++. .....++.+
T Consensus 214 ~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~~l~~~ 291 (1638)
T PRK14701 214 KASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRVKLYRE 291 (1638)
T ss_pred ccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHHHHhhc
Confidence 6 467666653 321 2344555 56799999863 222234456
Q ss_pred CceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHHhccCCeEEEEecchhH---HHHHHHHHHc-cCCccccccC
Q 007106 301 PLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRD---ADRLAHAMAK-SYNCEPLHGD 376 (618)
Q Consensus 301 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~---~~~l~~~L~~-~~~~~~lhg~ 376 (618)
+..+.+... ......+.+..+......+ ..+..+++.. +..+||||++++. ++.+++.|.+ .+++..+|++
T Consensus 292 ~l~f~v~~~--~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~ 366 (1638)
T PRK14701 292 LLGFEVGSG--RSALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK 366 (1638)
T ss_pred CeEEEecCC--CCCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch
Confidence 665554222 2233344444443333333 4566666654 4689999999875 5899999966 4899999985
Q ss_pred CCHHHHHHHHHHHhcCCccEEEEc----cccccCCCCCC-ccEEEEcCCCC---ChhHHHHhh-------------hccC
Q 007106 377 ISQSQRERTLSAFRDGRFNILIAT----DVAARGLDVPN-VDLIIHYELPN---TSETFVHRT-------------GRTG 435 (618)
Q Consensus 377 ~~~~~r~~i~~~f~~g~~~vLVaT----~~~~~Gidi~~-~~~VI~~~~p~---~~~~~~Qr~-------------GR~g 435 (618)
|..+++.|++|+++||||| ++++||||+|+ +++|||++.|. +++.|.|.. +|++
T Consensus 367 -----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~ 441 (1638)
T PRK14701 367 -----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEEL 441 (1638)
T ss_pred -----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhc
Confidence 8899999999999999999 58999999999 99999999999 888776655 9999
Q ss_pred CCCCcceEEEEecchhHHHHHHH
Q 007106 436 RAGKKGSAILIYTDQQARQVKSI 458 (618)
Q Consensus 436 R~g~~g~~~~~~~~~~~~~~~~l 458 (618)
|.|.+..+++.+...+...++.+
T Consensus 442 ~~g~~~~~~~~~~~~~~~~~~~~ 464 (1638)
T PRK14701 442 KEGIPIEGVLDVFPEDVEFLRSI 464 (1638)
T ss_pred ccCCcchhHHHhHHHHHHHHHHH
Confidence 99998888877767666666554
No 66
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=4e-35 Score=283.27 Aligned_cols=301 Identities=31% Similarity=0.503 Sum_probs=228.0
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhC-----CCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCc
Q 007106 172 RNPLCLVLAPTRELAKQVEKEFHESA-----PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEV 246 (618)
Q Consensus 172 ~~~~~lil~Pt~~La~q~~~~l~~~~-----~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~ 246 (618)
+.+++||+-|+++|++|.++.++++- |.++..++.++.....+...+.++.+|+|+||.+|.+.+....+.+.++
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~c 364 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHC 364 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeee
Confidence 35679999999999999999766543 3446667788888888999999999999999999999999999999999
Q ss_pred cEEEEchhhhhccCCcHHHHHHHHHhCCC------CCcEEEEEecCCh-HHHHHHHHhccCCceEeeccCCcc-cccCC-
Q 007106 247 QFVVLDEADQMLSVGFAEDVEVILERLPQ------NRQSMMFSATMPP-WIRSLTNKYLKNPLTVDLVGDSDQ-KLADG- 317 (618)
Q Consensus 247 ~~vViDEaH~~~~~~~~~~~~~il~~l~~------~~~~l~lSAT~~~-~~~~~~~~~l~~~~~i~~~~~~~~-~~~~~- 317 (618)
.++|+||++.++..++.+.+..+...++. ..|.+++|||+.. ++..+....+.-|.-+.+...... .....
T Consensus 365 rFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhv 444 (725)
T KOG0349|consen 365 RFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHV 444 (725)
T ss_pred EEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccc
Confidence 99999999999988888888888887763 5789999999853 233334344333333332111100 00000
Q ss_pred ------------------eE-------EEE--EeccCc---chhHH-----HHHHHHHhccCCeEEEEecchhHHHHHHH
Q 007106 318 ------------------IS-------LYS--IATSMY---EKPSI-----IGQLITEHAKGGKCIVFTQTKRDADRLAH 362 (618)
Q Consensus 318 ------------------~~-------~~~--~~~~~~---~k~~~-----l~~ll~~~~~~~~~lVf~~~~~~~~~l~~ 362 (618)
+. .+. ...+.. ....+ -...++++. -.+.||||.++..|+.|..
T Consensus 445 v~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~-mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 445 VKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHA-MDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred eeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhc-cCceEEEEeccccchHHHH
Confidence 00 000 000000 01111 112333332 3589999999999999999
Q ss_pred HHHc----cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCC
Q 007106 363 AMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAG 438 (618)
Q Consensus 363 ~L~~----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g 438 (618)
++.+ .+.|.++|++..+.||++.++.|++.+.++||||+++++||||..+-+||+..+|.+-.+|+|||||+||+.
T Consensus 524 ~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 524 MMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred HHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhh
Confidence 9965 388999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcceEEEEecch--------------------------------hHHHHHHHHHHhCCCcccCCccc
Q 007106 439 KKGSAILIYTDQ--------------------------------QARQVKSIERDVGCRFTQLPRIA 473 (618)
Q Consensus 439 ~~g~~~~~~~~~--------------------------------~~~~~~~l~~~l~~~~~~~~~~~ 473 (618)
+.|.++.++... +...+..++..|++.++++.+..
T Consensus 604 rmglaislvat~~ekvwyh~c~srgr~c~nt~l~e~~gc~iwyne~~llaeve~hln~ti~qv~~~~ 670 (725)
T KOG0349|consen 604 RMGLAISLVATVPEKVWYHWCKSRGRSCNNTNLTEVRGCCIWYNEPNLLAEVEDHLNITIQQVDKTM 670 (725)
T ss_pred hcceeEEEeeccchheeehhhhccCCcccCCccccccceEEEeCchhHHHHHHHhhcceeeeeCCCC
Confidence 888888765321 44567788899999998876543
No 67
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=2e-33 Score=288.04 Aligned_cols=288 Identities=19% Similarity=0.233 Sum_probs=197.5
Q ss_pred HHHHHHHHHhCCCC--EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC----
Q 007106 125 IQKAVLEPAMQGRD--MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---- 198 (618)
Q Consensus 125 ~Q~~~i~~i~~~~~--~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~---- 198 (618)
+|.++++.+.++.+ +++.+|||+|||.+|++|++.. ..++++++|+++|++|+++.+++++.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~ 68 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------------ENDTIALYPTNALIEDQTEAIKEFVDVFKP 68 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------------CCCEEEEeChHHHHHHHHHHHHHHHHhcCC
Confidence 69999999998864 7899999999999999988742 34689999999999999999888762
Q ss_pred --CCcEEEEEcCcchh--hh------------------hHHhhcCCCEEEEChHHHHHHHHhcC--------CCCCCccE
Q 007106 199 --SLDTICVYGGTPIS--HQ------------------MRALDYGVDAVVGTPGRVIDLIKRNA--------LNLSEVQF 248 (618)
Q Consensus 199 --~~~~~~~~g~~~~~--~~------------------~~~l~~~~~Ilv~T~~~l~~~l~~~~--------~~l~~~~~ 248 (618)
+..+..+.+..... .. .......+.|++|||+.|..++.... ..+.++++
T Consensus 69 ~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~ 148 (357)
T TIGR03158 69 ERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFST 148 (357)
T ss_pred CCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCE
Confidence 23333344432111 00 00112357899999999986664321 12478999
Q ss_pred EEEchhhhhccCCc-----HHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHh--ccCCceEeeccC------C-----
Q 007106 249 VVLDEADQMLSVGF-----AEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY--LKNPLTVDLVGD------S----- 310 (618)
Q Consensus 249 vViDEaH~~~~~~~-----~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~--l~~~~~i~~~~~------~----- 310 (618)
|||||+|.+..+.. ......++.......++++||||+++.+...+... +..+... +... .
T Consensus 149 iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~-v~g~~~~~~~~~~~~~ 227 (357)
T TIGR03158 149 VIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAP-IDGEKYQFPDNPELEA 227 (357)
T ss_pred EEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeee-ecCcccccCCChhhhc
Confidence 99999998764321 12333344444445799999999999877777654 3333222 1111 0
Q ss_pred --c----ccccCCeEEEEEeccCcchhHHHHHHHHHh------ccCCeEEEEecchhHHHHHHHHHHcc---CCcccccc
Q 007106 311 --D----QKLADGISLYSIATSMYEKPSIIGQLITEH------AKGGKCIVFTQTKRDADRLAHAMAKS---YNCEPLHG 375 (618)
Q Consensus 311 --~----~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~------~~~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~lhg 375 (618)
. ..+...+...... ....+...+..+++.. .++.++||||++++.++.+++.|.+. +.+..+|+
T Consensus 228 ~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g 306 (357)
T TIGR03158 228 DNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITG 306 (357)
T ss_pred cccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeec
Confidence 0 0011223333333 3333344333333322 24679999999999999999999753 46788999
Q ss_pred CCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccC
Q 007106 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTG 435 (618)
Q Consensus 376 ~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~g 435 (618)
.+++.+|+++. +..|||||+++++|||++.+ +|| ++ |.+++.|+||+||+|
T Consensus 307 ~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 307 FAPKKDRERAM------QFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCCHHHHHHhc------cCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 99999987653 78999999999999999876 566 44 889999999999986
No 68
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.6e-33 Score=302.77 Aligned_cols=305 Identities=20% Similarity=0.202 Sum_probs=211.0
Q ss_pred CCChHHHHHHHHHHhCC---CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007106 120 SKLFPIQKAVLEPAMQG---RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~---~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
..|+|||++++..+..+ +..+|++|||+|||++++..+.. + ..++|||||+.+|++||.+++.++
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l-----------~k~tLILvps~~Lv~QW~~ef~~~ 321 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V-----------KKSCLVLCTSAVSVEQWKQQFKMW 321 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h-----------CCCEEEEeCcHHHHHHHHHHHHHh
Confidence 56999999999998743 36899999999999998755433 2 346999999999999999999998
Q ss_pred CC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHh--------cCCCCCCccEEEEchhhhhccCCcHHHH
Q 007106 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR--------NALNLSEVQFVVLDEADQMLSVGFAEDV 266 (618)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~--------~~~~l~~~~~vViDEaH~~~~~~~~~~~ 266 (618)
+. ...+..+++.... ......+|+|+|++++.....+ ..+.-..+++||+||||++. ...+
T Consensus 322 ~~l~~~~I~~~tg~~k~-----~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp----A~~f 392 (732)
T TIGR00603 322 STIDDSQICRFTSDAKE-----RFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP----AAMF 392 (732)
T ss_pred cCCCCceEEEEecCccc-----ccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc----HHHH
Confidence 53 2334444443221 1122368999999988543211 11223578999999999974 4566
Q ss_pred HHHHHhCCCCCcEEEEEecCChHHHH--HHHHhccCCceEeecc--CCcccccCCeEEEEE-------------------
Q 007106 267 EVILERLPQNRQSMMFSATMPPWIRS--LTNKYLKNPLTVDLVG--DSDQKLADGISLYSI------------------- 323 (618)
Q Consensus 267 ~~il~~l~~~~~~l~lSAT~~~~~~~--~~~~~l~~~~~i~~~~--~~~~~~~~~~~~~~~------------------- 323 (618)
..++..+. ....|+|||||...... .+. ++..|..+...- -........+....+
T Consensus 393 r~il~~l~-a~~RLGLTATP~ReD~~~~~L~-~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~ 470 (732)
T TIGR00603 393 RRVLTIVQ-AHCKLGLTATLVREDDKITDLN-FLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRK 470 (732)
T ss_pred HHHHHhcC-cCcEEEEeecCcccCCchhhhh-hhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchh
Confidence 66777664 34579999999643211 111 111222211100 000000000110000
Q ss_pred ----eccCcchhHHHHHHHHHhc-cCCeEEEEecchhHHHHHHHHHHccCCccccccCCCHHHHHHHHHHHhcC-CccEE
Q 007106 324 ----ATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDG-RFNIL 397 (618)
Q Consensus 324 ----~~~~~~k~~~l~~ll~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~i~~~f~~g-~~~vL 397 (618)
......|...+..+++.+. .+.++||||.++..++.+++.| .+..+||.+++.+|+++++.|+++ .+++|
T Consensus 471 k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L----~~~~I~G~ts~~ER~~il~~Fr~~~~i~vL 546 (732)
T TIGR00603 471 RMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL----GKPFIYGPTSQQERMQILQNFQHNPKVNTI 546 (732)
T ss_pred hhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc----CCceEECCCCHHHHHHHHHHHHhCCCccEE
Confidence 1112234455555666553 5789999999999998888877 356799999999999999999875 78999
Q ss_pred EEccccccCCCCCCccEEEEcCCCC-ChhHHHHhhhccCCCCCcceE-------EEEecchh
Q 007106 398 IATDVAARGLDVPNVDLIIHYELPN-TSETFVHRTGRTGRAGKKGSA-------ILIYTDQQ 451 (618)
Q Consensus 398 VaT~~~~~Gidi~~~~~VI~~~~p~-~~~~~~Qr~GR~gR~g~~g~~-------~~~~~~~~ 451 (618)
|+|+++.+|||+|++++||+++.|. +..+|+||+||++|.++.+.+ |.+++...
T Consensus 547 v~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 547 FLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred EEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCc
Confidence 9999999999999999999999985 999999999999998766554 66666543
No 69
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=8.7e-33 Score=314.05 Aligned_cols=321 Identities=23% Similarity=0.311 Sum_probs=234.0
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC
Q 007106 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (618)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~ 198 (618)
..++++||++++..++.. ++||++|||+|||+++++++...+.. .+.++|||+||++|+.||.+.+++++.
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~--------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 83 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK--------KGGKVLILAPTKPLVEQHAEFFRKFLN 83 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh--------CCCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 346899999999888876 99999999999999998888876621 256899999999999999999998764
Q ss_pred C--CcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCC
Q 007106 199 S--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (618)
Q Consensus 199 ~--~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~ 276 (618)
. ..+..+++......+ ..+...++|+|+||+.+...+....+.+.++++|||||||++........+...+....+.
T Consensus 84 ~~~~~v~~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~ 162 (773)
T PRK13766 84 IPEEKIVVFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKN 162 (773)
T ss_pred CCCceEEEEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCC
Confidence 2 366667776665543 3344567999999999988887777888999999999999987654444444445455566
Q ss_pred CcEEEEEecCChH---HHHHHHHhccCCceE------------------ee-----------------------------
Q 007106 277 RQSMMFSATMPPW---IRSLTNKYLKNPLTV------------------DL----------------------------- 306 (618)
Q Consensus 277 ~~~l~lSAT~~~~---~~~~~~~~l~~~~~i------------------~~----------------------------- 306 (618)
.++++|||||... +......+......+ .+
T Consensus 163 ~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~ 242 (773)
T PRK13766 163 PLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKEL 242 (773)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 7899999998422 111111110000000 00
Q ss_pred --ccCCcc------------cccCCeE-----------------------------------------------------
Q 007106 307 --VGDSDQ------------KLADGIS----------------------------------------------------- 319 (618)
Q Consensus 307 --~~~~~~------------~~~~~~~----------------------------------------------------- 319 (618)
...... .+...+.
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~ 322 (773)
T PRK13766 243 GVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKA 322 (773)
T ss_pred CCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHH
Confidence 000000 0000000
Q ss_pred ---------------EEEEeccCcchhHHHHHHHHHh---ccCCeEEEEecchhHHHHHHHHHHc-cCCccccccC----
Q 007106 320 ---------------LYSIATSMYEKPSIIGQLITEH---AKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGD---- 376 (618)
Q Consensus 320 ---------------~~~~~~~~~~k~~~l~~ll~~~---~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~---- 376 (618)
..........|...+.+++++. ..+.++||||++++.++.+++.|.. .+.+..+||.
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~ 402 (773)
T PRK13766 323 SKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKD 402 (773)
T ss_pred HHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEcccccc
Confidence 0000011223455555666553 3568999999999999999999954 4777788776
Q ss_pred ----CCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecch
Q 007106 377 ----ISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 377 ----~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
|++.+|.++++.|++++++|||||+++++|+|+|++++||+||+|+++..|+||+||++|.+. +.+++++...
T Consensus 403 ~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~ 479 (773)
T PRK13766 403 GDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKG 479 (773)
T ss_pred ccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCC
Confidence 999999999999999999999999999999999999999999999999999999999999864 7777777643
No 70
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.6e-33 Score=299.36 Aligned_cols=315 Identities=21% Similarity=0.227 Sum_probs=230.9
Q ss_pred CCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC
Q 007106 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
+. .|+++|..+++.++.++ |.++.||+|||++|.+|++..+.. ++.++||+||++||.|.++++.+++
T Consensus 101 g~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~---------G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 101 GQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA---------GLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred CC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc---------CCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 44 48999999999999988 999999999999999999987654 7799999999999999999999876
Q ss_pred C--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHH-HHHHHhcC-------------------------CCCCCccEE
Q 007106 198 P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA-------------------------LNLSEVQFV 249 (618)
Q Consensus 198 ~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l-~~~l~~~~-------------------------~~l~~~~~v 249 (618)
. ++.+.+++++.+. +.+.....++|+|+|...| .++|.... ...+.+.++
T Consensus 169 ~~lGlsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~a 246 (656)
T PRK12898 169 EALGLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFA 246 (656)
T ss_pred hhcCCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccccccee
Confidence 4 5778888888653 3444556799999999888 55554331 113557899
Q ss_pred EEchhhhhcc-C-----------------CcHHHHHHHHHhCCCC-----------------------------------
Q 007106 250 VLDEADQMLS-V-----------------GFAEDVEVILERLPQN----------------------------------- 276 (618)
Q Consensus 250 ViDEaH~~~~-~-----------------~~~~~~~~il~~l~~~----------------------------------- 276 (618)
||||+|.++= . .+......+...+...
T Consensus 247 IvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~ 326 (656)
T PRK12898 247 IVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRG 326 (656)
T ss_pred EeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhccc
Confidence 9999997631 0 0111111111111100
Q ss_pred --------------------------------------------------------------------------------
Q 007106 277 -------------------------------------------------------------------------------- 276 (618)
Q Consensus 277 -------------------------------------------------------------------------------- 276 (618)
T Consensus 327 ~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr 406 (656)
T PRK12898 327 AVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFR 406 (656)
T ss_pred chHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHH
Confidence
Q ss_pred --CcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHHhc-cCCeEEEEecc
Q 007106 277 --RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQT 353 (618)
Q Consensus 277 --~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~-~~~~~lVf~~~ 353 (618)
.++..||||......++...|..++..+.... ..... .....+..+..+|...+.+.+.... .+.++||||++
T Consensus 407 ~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~k---p~~r~-~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t 482 (656)
T PRK12898 407 RYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNR---PSQRR-HLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRS 482 (656)
T ss_pred hhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCC---Cccce-ecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 03456777776665566555555544442211 11111 1122233455567777777776643 46789999999
Q ss_pred hhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCC---Ccc-----EEEEcCCCCCh
Q 007106 354 KRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP---NVD-----LIIHYELPNTS 424 (618)
Q Consensus 354 ~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~---~~~-----~VI~~~~p~~~ 424 (618)
++.++.+++.|.+. +++..+|+++. +|++.+..+..+...|+|||+++++|+||+ ++. +||+++.|.+.
T Consensus 483 ~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~ 560 (656)
T PRK12898 483 VAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSA 560 (656)
T ss_pred HHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCH
Confidence 99999999999654 99999999865 455555666666677999999999999999 665 99999999999
Q ss_pred hHHHHhhhccCCCCCcceEEEEecchhH
Q 007106 425 ETFVHRTGRTGRAGKKGSAILIYTDQQA 452 (618)
Q Consensus 425 ~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 452 (618)
..|.||+||+||.|.+|.+++|++.+|.
T Consensus 561 r~y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 561 RIDRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred HHHHHhcccccCCCCCeEEEEEechhHH
Confidence 9999999999999999999999997654
No 71
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.5e-33 Score=310.33 Aligned_cols=331 Identities=18% Similarity=0.290 Sum_probs=259.0
Q ss_pred HHHHHH-HHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHH
Q 007106 109 DIVAAL-ARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (618)
Q Consensus 109 ~l~~~l-~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (618)
++...| ...+...+++-|.++|..++.+++++|.+|||.||+++|.+|++-. ...+|||.|..+|++
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------------~gitvVISPL~SLm~ 318 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------------GGVTVVISPLISLMQ 318 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------------CCceEEeccHHHHHH
Confidence 344444 4578999999999999999999999999999999999999998755 558999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEEcCcchhhhhHH---hhc---CCCEEEEChHHHHHH--HHhcCCCCCC---ccEEEEchhhh
Q 007106 188 QVEKEFHESAPSLDTICVYGGTPISHQMRA---LDY---GVDAVVGTPGRVIDL--IKRNALNLSE---VQFVVLDEADQ 256 (618)
Q Consensus 188 q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~---l~~---~~~Ilv~T~~~l~~~--l~~~~~~l~~---~~~vViDEaH~ 256 (618)
.+...+... .+....+.+.....++... +.. .++|++.||+++... +......+.. +.++||||||+
T Consensus 319 DQv~~L~~~--~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHC 396 (941)
T KOG0351|consen 319 DQVTHLSKK--GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHC 396 (941)
T ss_pred HHHHhhhhc--CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHH
Confidence 887777443 5777777777766544322 222 478999999998532 2222223444 88999999999
Q ss_pred hccCC--cHHHHHHHH---HhCCCCCcEEEEEecCChHHHHHHHHhcc--CCceEeeccCCcccccCCeEEEEEeccCcc
Q 007106 257 MLSVG--FAEDVEVIL---ERLPQNRQSMMFSATMPPWIRSLTNKYLK--NPLTVDLVGDSDQKLADGISLYSIATSMYE 329 (618)
Q Consensus 257 ~~~~~--~~~~~~~il---~~l~~~~~~l~lSAT~~~~~~~~~~~~l~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (618)
+..|+ |.+.++++. .+. +...+|.||||.+..+++.+...|. ++..+. . .....++...........
T Consensus 397 VSqWgHdFRp~Yk~l~~l~~~~-~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~---~--sfnR~NL~yeV~~k~~~~ 470 (941)
T KOG0351|consen 397 VSQWGHDFRPSYKRLGLLRIRF-PGVPFIALTATATERVREDVIRSLGLRNPELFK---S--SFNRPNLKYEVSPKTDKD 470 (941)
T ss_pred hhhhcccccHHHHHHHHHHhhC-CCCCeEEeehhccHHHHHHHHHHhCCCCcceec---c--cCCCCCceEEEEeccCcc
Confidence 99986 666655543 333 3478999999999988887766654 333221 1 111222222223333234
Q ss_pred hhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCC
Q 007106 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLD 408 (618)
Q Consensus 330 k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gid 408 (618)
....+...++...+....||||.++.+|+.++..|.+. +.+..+|++|+..+|+.+...|..++++|+|||-++++|||
T Consensus 471 ~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGId 550 (941)
T KOG0351|consen 471 ALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGID 550 (941)
T ss_pred chHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCC
Confidence 44445555666667889999999999999999999775 78999999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHH
Q 007106 409 VPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459 (618)
Q Consensus 409 i~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~ 459 (618)
.|+|+.||||.+|.+++.|.|.+|||||.|....|++|+...|...++.+.
T Consensus 551 K~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll 601 (941)
T KOG0351|consen 551 KPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLL 601 (941)
T ss_pred CCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999877776553
No 72
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=3.5e-33 Score=310.29 Aligned_cols=336 Identities=23% Similarity=0.343 Sum_probs=251.2
Q ss_pred CCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHH
Q 007106 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (618)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~L 185 (618)
....+..+|.+.++..|++||.+|+..+.+++|+||+.+||||||.+|++|+++.+++. ...++|+|.||++|
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~-------~~a~AL~lYPtnAL 127 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRD-------PSARALLLYPTNAL 127 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhC-------cCccEEEEechhhh
Confidence 34456788888999999999999999999999999999999999999999999999872 23478999999999
Q ss_pred HHHHHHHHHHhCC----CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhc----CCCCCCccEEEEchhhhh
Q 007106 186 AKQVEKEFHESAP----SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN----ALNLSEVQFVVLDEADQM 257 (618)
Q Consensus 186 a~q~~~~l~~~~~----~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~----~~~l~~~~~vViDEaH~~ 257 (618)
|+.+.+++.++.. .+++...+|..+...+.....+.++||+|||+||...+... .+.++++++||+||+|.+
T Consensus 128 a~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtY 207 (851)
T COG1205 128 ANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTY 207 (851)
T ss_pred HhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceec
Confidence 9999999988654 34455566666666666777888999999999998855443 234778999999999976
Q ss_pred ccCCcHHHHHHHHHhC-------CCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEE-----ec
Q 007106 258 LSVGFAEDVEVILERL-------PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI-----AT 325 (618)
Q Consensus 258 ~~~~~~~~~~~il~~l-------~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~-----~~ 325 (618)
-.. |+..+..+++++ +.+.|+|++|||+.+.- +....++.......+..+....-...+..... ..
T Consensus 208 rGv-~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~-e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~ 285 (851)
T COG1205 208 RGV-QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPG-EFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAE 285 (851)
T ss_pred ccc-chhHHHHHHHHHHHHHhccCCCceEEEEeccccChH-HHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhh
Confidence 544 555555555444 45789999999987643 34444444443332222111111111111110 00
Q ss_pred c-CcchhHHHHHHHHH-hccCCeEEEEecchhHHHHHHHHH-----Hcc----CCccccccCCCHHHHHHHHHHHhcCCc
Q 007106 326 S-MYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAM-----AKS----YNCEPLHGDISQSQRERTLSAFRDGRF 394 (618)
Q Consensus 326 ~-~~~k~~~l~~ll~~-~~~~~~~lVf~~~~~~~~~l~~~L-----~~~----~~~~~lhg~~~~~~r~~i~~~f~~g~~ 394 (618)
. ...+...+..++.. ...+-++|||+.+++.++.++... ... ..+..+++.|..++|.+++..|++|+.
T Consensus 286 ~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~ 365 (851)
T COG1205 286 SIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGEL 365 (851)
T ss_pred hcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCc
Confidence 0 11223333333332 235679999999999999997322 222 357788999999999999999999999
Q ss_pred cEEEEccccccCCCCCCccEEEEcCCCC-ChhHHHHhhhccCCCCCcceEEEEecch
Q 007106 395 NILIATDVAARGLDVPNVDLIIHYELPN-TSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 395 ~vLVaT~~~~~Gidi~~~~~VI~~~~p~-~~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
.++++|++++.||||-+++.||....|. +..++.|+.||+||.++....+++...+
T Consensus 366 ~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 366 LGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred cEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 9999999999999999999999999999 8999999999999998777777776633
No 73
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=3.4e-33 Score=294.00 Aligned_cols=337 Identities=22% Similarity=0.301 Sum_probs=235.4
Q ss_pred CCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHH
Q 007106 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (618)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~L 185 (618)
+++...+...--....|+.||.+.+..++ ++|+||++|||+|||+++...++.++.. .+..++|+++|++-|
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw-------~p~~KiVF~aP~~pL 118 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEW-------RPKGKVVFLAPTRPL 118 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhc-------CCcceEEEeeCCchH
Confidence 34444444433445669999999999999 9999999999999999998888877643 224789999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCC-CCCccEEEEchhhhhccCCcHH
Q 007106 186 AKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALN-LSEVQFVVLDEADQMLSVGFAE 264 (618)
Q Consensus 186 a~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~-l~~~~~vViDEaH~~~~~~~~~ 264 (618)
+.|....+..++.+..+....++.........+....+|+|+||+.|.+.|...... +.++.++||||||+.....-..
T Consensus 119 v~QQ~a~~~~~~~~~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~ 198 (746)
T KOG0354|consen 119 VNQQIACFSIYLIPYSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYN 198 (746)
T ss_pred HHHHHHHHhhccCcccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHH
Confidence 999998888877555666666664444444455566899999999999888775433 5889999999999876554444
Q ss_pred -HHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhcc--------------------------------------------
Q 007106 265 -DVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLK-------------------------------------------- 299 (618)
Q Consensus 265 -~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~-------------------------------------------- 299 (618)
.+...+.......|+|+|||||-............
T Consensus 199 ~Vmr~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~ 278 (746)
T KOG0354|consen 199 NIMREYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMI 278 (746)
T ss_pred HHHHHHHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHH
Confidence 44455555555569999999985332222111100
Q ss_pred -----------------CCceEe---e--ccCC-------ccc----------------ccCCeE---------------
Q 007106 300 -----------------NPLTVD---L--VGDS-------DQK----------------LADGIS--------------- 319 (618)
Q Consensus 300 -----------------~~~~i~---~--~~~~-------~~~----------------~~~~~~--------------- 319 (618)
+..... + .... ... ....+.
T Consensus 279 i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~ 358 (746)
T KOG0354|consen 279 IEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEV 358 (746)
T ss_pred HHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhcccc
Confidence 000000 0 0000 000 000000
Q ss_pred --------------------------EEE-EeccCcchhHHHHHHHHHh---ccCCeEEEEecchhHHHHHHHHHHcc--
Q 007106 320 --------------------------LYS-IATSMYEKPSIIGQLITEH---AKGGKCIVFTQTKRDADRLAHAMAKS-- 367 (618)
Q Consensus 320 --------------------------~~~-~~~~~~~k~~~l~~ll~~~---~~~~~~lVf~~~~~~~~~l~~~L~~~-- 367 (618)
... .......|...+.+++.+. .+..++||||.+++.++.|..+|.+.
T Consensus 359 ~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~ 438 (746)
T KOG0354|consen 359 ALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHE 438 (746)
T ss_pred chhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhh
Confidence 000 0001122334444444433 34579999999999999999998631
Q ss_pred --CCcccc--------ccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCC
Q 007106 368 --YNCEPL--------HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRA 437 (618)
Q Consensus 368 --~~~~~l--------hg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~ 437 (618)
++...+ ..+|++.++++++++|++|+++|||||+++|+||||+.++.||-||+..++...+||+|| ||+
T Consensus 439 ~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa 517 (746)
T KOG0354|consen 439 LGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA 517 (746)
T ss_pred cccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc
Confidence 122222 247999999999999999999999999999999999999999999999999999999999 998
Q ss_pred CCcceEEEEecchhH
Q 007106 438 GKKGSAILIYTDQQA 452 (618)
Q Consensus 438 g~~g~~~~~~~~~~~ 452 (618)
+.|+|+++++..+.
T Consensus 518 -~ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 518 -RNSKCVLLTTGSEV 531 (746)
T ss_pred -cCCeEEEEEcchhH
Confidence 67899999885433
No 74
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=9.8e-34 Score=273.48 Aligned_cols=333 Identities=18% Similarity=0.277 Sum_probs=240.2
Q ss_pred HHHHHHHH-cCCCC-ChHHHHHHHHHHhCC-CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHH
Q 007106 109 DIVAALAR-RGISK-LFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (618)
Q Consensus 109 ~l~~~l~~-~~~~~-l~~~Q~~~i~~i~~~-~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~L 185 (618)
.+.+.|++ +++.+ -++.|++|+..+.++ +|+.|++|||+||+++|.+|.|.. +..+||+.|..+|
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------------~gITIV~SPLiAL 73 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------------GGITIVISPLIAL 73 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------------CCeEEEehHHHHH
Confidence 34455644 34433 379999999988765 689999999999999999998865 4589999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh------cCCCEEEEChHHHHHHH----HhcCCCCCCccEEEEchhh
Q 007106 186 AKQVEKEFHESAPSLDTICVYGGTPISHQMRALD------YGVDAVVGTPGRVIDLI----KRNALNLSEVQFVVLDEAD 255 (618)
Q Consensus 186 a~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~------~~~~Ilv~T~~~l~~~l----~~~~~~l~~~~~vViDEaH 255 (618)
.....+.+.++ .+.+..+....+..++.+.+. ....+++.||++..... .+...+-.-+.++|+||||
T Consensus 74 IkDQiDHL~~L--KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAH 151 (641)
T KOG0352|consen 74 IKDQIDHLKRL--KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAH 151 (641)
T ss_pred HHHHHHHHHhc--CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhh
Confidence 99998888876 344444555544444433322 24679999999864322 2222334458899999999
Q ss_pred hhccCC--cHHHHHHH--HHhCCCCCcEEEEEecCChHHHHHHHHh--ccCCceEeeccCCcccccCCeEEEEEeccCcc
Q 007106 256 QMLSVG--FAEDVEVI--LERLPQNRQSMMFSATMPPWIRSLTNKY--LKNPLTVDLVGDSDQKLADGISLYSIATSMYE 329 (618)
Q Consensus 256 ~~~~~~--~~~~~~~i--l~~l~~~~~~l~lSAT~~~~~~~~~~~~--l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (618)
++..|+ |.+.+..+ ++..-+...-+.+|||..+.+.+.+..- +.+|..+--.+.....+...+... ....+
T Consensus 152 CVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K---~~I~D 228 (641)
T KOG0352|consen 152 CVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMK---SFITD 228 (641)
T ss_pred hHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHH---HHhhh
Confidence 999986 55555443 2222357788999999999888765443 445544321111111111000000 00111
Q ss_pred hhHHHHHHH-HHhc---------c--CCeEEEEecchhHHHHHHHHHH-ccCCccccccCCCHHHHHHHHHHHhcCCccE
Q 007106 330 KPSIIGQLI-TEHA---------K--GGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396 (618)
Q Consensus 330 k~~~l~~ll-~~~~---------~--~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~lhg~~~~~~r~~i~~~f~~g~~~v 396 (618)
-...|.+.. ..+. + .+.-||||.|+++|+.++-.|. +.++...+|.++...||.++.+.|.+++..|
T Consensus 229 ~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~Pv 308 (641)
T KOG0352|consen 229 CLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPV 308 (641)
T ss_pred HhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCE
Confidence 111222211 1111 1 3577999999999999999995 4599999999999999999999999999999
Q ss_pred EEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHH
Q 007106 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458 (618)
Q Consensus 397 LVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 458 (618)
|+||..+.+|||-|++++|||++.|.++.-|.|..||+||.|.+.+|-++|..+|...+.-+
T Consensus 309 I~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FL 370 (641)
T KOG0352|consen 309 IAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFL 370 (641)
T ss_pred EEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887665543
No 75
>PRK09694 helicase Cas3; Provisional
Probab=100.00 E-value=2.7e-32 Score=301.84 Aligned_cols=403 Identities=19% Similarity=0.191 Sum_probs=254.9
Q ss_pred chhhhHHHHhhhcchhhHHhhhhhhhccCCCCCCCCCccccccCCcccccccc--ccCCCCccc----h-hHHhhhhhcc
Q 007106 12 SFLTSKRALTAALTSVETILHSHLAAAKSGPVIPRHDDIIKSRFSAGTREFHA--ISRPLDFKS----S-IAWQHAQSAV 84 (618)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~-~~~~~~~~~~ 84 (618)
.|.++.++|+..+......... . ..+.++.+.++.-..+....+|+.+ ....|++.. . ..|+......
T Consensus 184 ~~~~a~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~laGlv~lADWi~S~~~~~~Fp~~~~~~~l~~~~~~~~~~a 258 (878)
T PRK09694 184 QDKQAREEWIQALEALFLTPAG----L-SLNDIPPPCSPLLAGFCSVSDWLGSWTTTFTFLFNSPILALRQYFQQRQQDA 258 (878)
T ss_pred ccHHHHHHHHHHHHHHhCCCcc----c-cccccCHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCcCCHHHHHHHHHHHH
Confidence 4678899999987776543211 1 1123455666777777888899988 777776632 1 1344443333
Q ss_pred ccccccCCCCCCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHH
Q 007106 85 DDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKF 164 (618)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~ 164 (618)
.+.+........ +... ..+... ......|+|+|+.+.........+||.+|||+|||.++++++...+.+
T Consensus 259 ~~al~~~gl~~~----~~~~---~~~~~~--~~~~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~- 328 (878)
T PRK09694 259 ARVLELSGLVAN----KKPY---GGVHAL--LDNGYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ- 328 (878)
T ss_pred HHHHHhcCCCCC----CCCc---cchHhh--ccCCCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh-
Confidence 333332211110 1000 111111 123457999999886554445568999999999999988776644322
Q ss_pred hhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH----hCCCCcEEEEEcCcchhhhh---------------------HHhh
Q 007106 165 NEKHGRGRNPLCLVLAPTRELAKQVEKEFHE----SAPSLDTICVYGGTPISHQM---------------------RALD 219 (618)
Q Consensus 165 ~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~----~~~~~~~~~~~g~~~~~~~~---------------------~~l~ 219 (618)
+....++|..||+++++|+++++.+ .++...+.+.|+........ ..+.
T Consensus 329 ------~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 402 (878)
T PRK09694 329 ------GLADSIIFALPTQATANAMLSRLEALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLS 402 (878)
T ss_pred ------CCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHh
Confidence 2245899999999999999999875 44445667777654321100 0111
Q ss_pred ---c---CCCEEEEChHHHHHHHHh-cCCCCCCc----cEEEEchhhhhccCCcHHHHHHHHHhCC-CCCcEEEEEecCC
Q 007106 220 ---Y---GVDAVVGTPGRVIDLIKR-NALNLSEV----QFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSMMFSATMP 287 (618)
Q Consensus 220 ---~---~~~Ilv~T~~~l~~~l~~-~~~~l~~~----~~vViDEaH~~~~~~~~~~~~~il~~l~-~~~~~l~lSAT~~ 287 (618)
+ -.+|+|||+++++..+.. ....++.+ ++|||||+|.+ +..+...+..+++.+. ....+|+||||+|
T Consensus 403 ~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP 481 (878)
T PRK09694 403 QSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLP 481 (878)
T ss_pred hhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCC
Confidence 1 168999999998754433 22222333 48999999976 3334556666666653 4678999999999
Q ss_pred hHHHHHHHHhccCC---------ceEeeccCCc-cc--c-------cCC--eEEEEEecc-CcchhHHHHHHHHHhccCC
Q 007106 288 PWIRSLTNKYLKNP---------LTVDLVGDSD-QK--L-------ADG--ISLYSIATS-MYEKPSIIGQLITEHAKGG 345 (618)
Q Consensus 288 ~~~~~~~~~~l~~~---------~~i~~~~~~~-~~--~-------~~~--~~~~~~~~~-~~~k~~~l~~ll~~~~~~~ 345 (618)
...+..+...+... ..++...... .. . ... +........ ......++..+++....++
T Consensus 482 ~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~ 561 (878)
T PRK09694 482 ATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGA 561 (878)
T ss_pred HHHHHHHHHHhccccccccccccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCC
Confidence 88776544332211 0000000000 00 0 001 111111111 1222445566666666788
Q ss_pred eEEEEecchhHHHHHHHHHHcc----CCccccccCCCHHHHH----HHHHHH-hcCC---ccEEEEccccccCCCCCCcc
Q 007106 346 KCIVFTQTKRDADRLAHAMAKS----YNCEPLHGDISQSQRE----RTLSAF-RDGR---FNILIATDVAARGLDVPNVD 413 (618)
Q Consensus 346 ~~lVf~~~~~~~~~l~~~L~~~----~~~~~lhg~~~~~~r~----~i~~~f-~~g~---~~vLVaT~~~~~Gidi~~~~ 413 (618)
++|||||+++.++.+++.|++. .++.++|++++..+|+ ++++.| ++++ ..|||||+++|+|||| +++
T Consensus 562 ~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~D 640 (878)
T PRK09694 562 QVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFD 640 (878)
T ss_pred EEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCC
Confidence 9999999999999999999764 4689999999999994 566777 5565 4799999999999999 689
Q ss_pred EEEEcCCCCChhHHHHhhhccCCCCC
Q 007106 414 LIIHYELPNTSETFVHRTGRTGRAGK 439 (618)
Q Consensus 414 ~VI~~~~p~~~~~~~Qr~GR~gR~g~ 439 (618)
+||...+| ++.++||+||++|.+.
T Consensus 641 vlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 641 WLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred eEEECCCC--HHHHHHHHhccCCCCC
Confidence 99998887 6789999999999864
No 76
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=5.8e-32 Score=309.98 Aligned_cols=290 Identities=21% Similarity=0.354 Sum_probs=212.3
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHH
Q 007106 108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (618)
Q Consensus 108 ~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (618)
.++.+.+.+....+|+++|+.+++.++.++++++++|||+|||+ |.++++..+.. .++++|||+||++||.
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~--------~g~~vLIL~PTreLa~ 135 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK--------KGKRCYIILPTTLLVI 135 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh--------cCCeEEEEeCHHHHHH
Confidence 45566666655667999999999999999999999999999997 55666554432 2678999999999999
Q ss_pred HHHHHHHHhCCCC--cEE---EEEcCcchhhhhH---Hhhc-CCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhc
Q 007106 188 QVEKEFHESAPSL--DTI---CVYGGTPISHQMR---ALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 188 q~~~~l~~~~~~~--~~~---~~~g~~~~~~~~~---~l~~-~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~ 258 (618)
|+++.+.++.... .+. +++++.+...+.. .+.+ .++|||+||++|.+.+.. +.. +++++|+||||+|+
T Consensus 136 Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEaD~~L 212 (1171)
T TIGR01054 136 QVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDVDALL 212 (1171)
T ss_pred HHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeChHhhh
Confidence 9999999887532 322 3567766554432 2333 489999999999887765 212 89999999999998
Q ss_pred c-----------CCcHHH-HHHHH----------------------HhCCCCCc--EEEEEec-CChHHHHHHHHhccCC
Q 007106 259 S-----------VGFAED-VEVIL----------------------ERLPQNRQ--SMMFSAT-MPPWIRSLTNKYLKNP 301 (618)
Q Consensus 259 ~-----------~~~~~~-~~~il----------------------~~l~~~~~--~l~lSAT-~~~~~~~~~~~~l~~~ 301 (618)
+ ++|... +..++ ..++...| ++++||| +|..+.. .++.+.
T Consensus 213 ~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~l 289 (1171)
T TIGR01054 213 KASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFREL 289 (1171)
T ss_pred hccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccc
Confidence 7 566553 44432 23444555 5678999 4554432 334455
Q ss_pred ceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHHhccCCeEEEEecch---hHHHHHHHHHHcc-CCccccccCC
Q 007106 302 LTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTK---RDADRLAHAMAKS-YNCEPLHGDI 377 (618)
Q Consensus 302 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~---~~~~~l~~~L~~~-~~~~~lhg~~ 377 (618)
..+.+... .....++.+....... +...+.++++.. +.++||||+++ +.++.+++.|.+. +++..+|+++
T Consensus 290 l~~~v~~~--~~~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~ 363 (1171)
T TIGR01054 290 LGFEVGGG--SDTLRNVVDVYVEDED--LKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATK 363 (1171)
T ss_pred cceEecCc--cccccceEEEEEeccc--HHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCC
Confidence 54544221 2223334444433222 234566666654 45899999999 9999999999764 8999999999
Q ss_pred CHHHHHHHHHHHhcCCccEEEE----ccccccCCCCCC-ccEEEEcCCCC
Q 007106 378 SQSQRERTLSAFRDGRFNILIA----TDVAARGLDVPN-VDLIIHYELPN 422 (618)
Q Consensus 378 ~~~~r~~i~~~f~~g~~~vLVa----T~~~~~Gidi~~-~~~VI~~~~p~ 422 (618)
++ .+++.|++|+++|||| |++++||||+|+ +++||+|++|.
T Consensus 364 ~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 364 PK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred CH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 73 6899999999999999 489999999999 89999999996
No 77
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=6.6e-32 Score=293.28 Aligned_cols=316 Identities=17% Similarity=0.250 Sum_probs=222.8
Q ss_pred CCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC
Q 007106 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
+. .|+++|..++..+.+++ |+++.||+|||++|++|++...+. +..++|++||++||.|.++++..++
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~---------G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE---------GKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc---------CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 55 49999999988888765 999999999999999999876655 7789999999999999999999877
Q ss_pred C--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHH-HHHHHhcC------CCCCCccEEEEchhhhhccC--------
Q 007106 198 P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQMLSV-------- 260 (618)
Q Consensus 198 ~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l-~~~l~~~~------~~l~~~~~vViDEaH~~~~~-------- 260 (618)
. ++.+.++.++.+...+.+ ....++|+|+||..| .+++.... ..++.+.++||||||+++=.
T Consensus 144 ~~lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tplii 222 (790)
T PRK09200 144 EFLGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLII 222 (790)
T ss_pred hhcCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceee
Confidence 5 466788888777333322 335689999999998 55554432 24678999999999987411
Q ss_pred --------CcHHHHHHHHHhCCCC--------CcEEEEEec---------------------------------------
Q 007106 261 --------GFAEDVEVILERLPQN--------RQSMMFSAT--------------------------------------- 285 (618)
Q Consensus 261 --------~~~~~~~~il~~l~~~--------~~~l~lSAT--------------------------------------- 285 (618)
.....+..+...+... .+.+.+|..
T Consensus 223 sg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d 302 (790)
T PRK09200 223 SGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRD 302 (790)
T ss_pred eCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcC
Confidence 1223333444444221 122222221
Q ss_pred ----------------------------------------------------------------------CChHHHHHHH
Q 007106 286 ----------------------------------------------------------------------MPPWIRSLTN 295 (618)
Q Consensus 286 ----------------------------------------------------------------------~~~~~~~~~~ 295 (618)
......++..
T Consensus 303 ~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~ 382 (790)
T PRK09200 303 VDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFE 382 (790)
T ss_pred CcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHH
Confidence 1100000000
Q ss_pred HhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHH-hccCCeEEEEecchhHHHHHHHHHHc-cCCcccc
Q 007106 296 KYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPL 373 (618)
Q Consensus 296 ~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~-~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~l 373 (618)
.| +...+ .++...+....... ..+..+..+|...+...+.. +..+.++||||++++.++.+++.|.+ .+++..+
T Consensus 383 ~Y--~l~v~-~IPt~kp~~r~d~~-~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L 458 (790)
T PRK09200 383 VY--NMEVV-QIPTNRPIIRIDYP-DKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLL 458 (790)
T ss_pred Hh--CCcEE-ECCCCCCcccccCC-CeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEe
Confidence 00 00000 01111110011111 11223444566666666654 35678999999999999999999976 5999999
Q ss_pred ccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCC---CCcc-----EEEEcCCCCChhHHHHhhhccCCCCCcceEEE
Q 007106 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV---PNVD-----LIIHYELPNTSETFVHRTGRTGRAGKKGSAIL 445 (618)
Q Consensus 374 hg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi---~~~~-----~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~ 445 (618)
|+++.+.++..+...++.+ .|+|||++++||+|| +.+. +||+++.|.+...|.||+||+||.|.+|.+++
T Consensus 459 ~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~ 536 (790)
T PRK09200 459 NAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQF 536 (790)
T ss_pred cCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEE
Confidence 9999988888777777665 799999999999999 6898 99999999999999999999999999999999
Q ss_pred EecchhH
Q 007106 446 IYTDQQA 452 (618)
Q Consensus 446 ~~~~~~~ 452 (618)
|++.+|.
T Consensus 537 ~is~eD~ 543 (790)
T PRK09200 537 FISLEDD 543 (790)
T ss_pred EEcchHH
Confidence 9987654
No 78
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=1.7e-32 Score=260.99 Aligned_cols=336 Identities=20% Similarity=0.307 Sum_probs=258.3
Q ss_pred cCCCCCHHHHHHHHH-cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEc
Q 007106 102 SKLDISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA 180 (618)
Q Consensus 102 ~~~~l~~~l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~ 180 (618)
+++|++.+..+.|+. +...+++|.|..+|+..+.+.+++++.|||.||+++|.+|++.. ...+||+|
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------------dg~alvi~ 141 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------------DGFALVIC 141 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------------CCceEeec
Confidence 367888899998865 57788999999999999999999999999999999999999865 67899999
Q ss_pred CcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhh---HHhh---cCCCEEEEChHHHHHH---HH--hcCCCCCCccEE
Q 007106 181 PTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM---RALD---YGVDAVVGTPGRVIDL---IK--RNALNLSEVQFV 249 (618)
Q Consensus 181 Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~---~~l~---~~~~Ilv~T~~~l~~~---l~--~~~~~l~~~~~v 249 (618)
|..+|++...-.++.+. +....+....+..+.. ..+. ....+++.||+.+... +. ...+....+.+|
T Consensus 142 plislmedqil~lkqlg--i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~i 219 (695)
T KOG0353|consen 142 PLISLMEDQILQLKQLG--IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLI 219 (695)
T ss_pred hhHHHHHHHHHHHHHhC--cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEE
Confidence 99999999888888873 4444444443332221 1111 2378999999998532 11 134556778999
Q ss_pred EEchhhhhccCC--cHHHHH--HHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEec
Q 007106 250 VLDEADQMLSVG--FAEDVE--VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325 (618)
Q Consensus 250 ViDEaH~~~~~~--~~~~~~--~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~ 325 (618)
.|||+|+...|+ |.+.+. .++.+--+...+|.+|||.++.+.......+.-....++... ..+.....++...+.
T Consensus 220 aidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~-fnr~nl~yev~qkp~ 298 (695)
T KOG0353|consen 220 AIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAG-FNRPNLKYEVRQKPG 298 (695)
T ss_pred eecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecc-cCCCCceeEeeeCCC
Confidence 999999999886 444433 345554568889999999999888877776654333332111 111111222233333
Q ss_pred cCcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccc
Q 007106 326 SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404 (618)
Q Consensus 326 ~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~ 404 (618)
+.++-.+-+..+|+....+..-||||.+.+.++.++..|+.. +....+|..|.+++|.-+-..|..|++.|+|||-++.
T Consensus 299 n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafg 378 (695)
T KOG0353|consen 299 NEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFG 378 (695)
T ss_pred ChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeec
Confidence 333344444455555556788899999999999999999765 8889999999999999999999999999999999999
Q ss_pred cCCCCCCccEEEEcCCCCChhHHHH-------------------------------------------hhhccCCCCCcc
Q 007106 405 RGLDVPNVDLIIHYELPNTSETFVH-------------------------------------------RTGRTGRAGKKG 441 (618)
Q Consensus 405 ~Gidi~~~~~VI~~~~p~~~~~~~Q-------------------------------------------r~GR~gR~g~~g 441 (618)
+|||-|++++|||..+|.+++.|.| ..||+||.+.+.
T Consensus 379 mgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a 458 (695)
T KOG0353|consen 379 MGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKA 458 (695)
T ss_pred ccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcc
Confidence 9999999999999999999999999 679999999999
Q ss_pred eEEEEecchhH
Q 007106 442 SAILIYTDQQA 452 (618)
Q Consensus 442 ~~~~~~~~~~~ 452 (618)
.|+++|.-.|.
T Consensus 459 ~cilyy~~~di 469 (695)
T KOG0353|consen 459 DCILYYGFADI 469 (695)
T ss_pred cEEEEechHHH
Confidence 99999976543
No 79
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=5.3e-32 Score=287.68 Aligned_cols=334 Identities=19% Similarity=0.281 Sum_probs=240.8
Q ss_pred cCCCCChHHHHHHHHHHhC-CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcC-CCCCCeEEEEcCcHHHHHHHHHHHH
Q 007106 117 RGISKLFPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG-RGRNPLCLVLAPTRELAKQVEKEFH 194 (618)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~-~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~-~~~~~~~lil~Pt~~La~q~~~~l~ 194 (618)
+++..+..+|.+++|.+.+ +.|+||+||||+|||.+|+++|+..+.++..... .....++|+|+|+++||.++++.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 5677899999999998764 6799999999999999999999999876333211 2246799999999999999999998
Q ss_pred HhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcC---CCCCCccEEEEchhhhhccCCcHHHHHHH
Q 007106 195 ESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA---LNLSEVQFVVLDEADQMLSVGFAEDVEVI 269 (618)
Q Consensus 195 ~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~---~~l~~~~~vViDEaH~~~~~~~~~~~~~i 269 (618)
+.+. ++.+.-++|+....... -..++|||+||+++.-.-++.. ..+..+.+|||||+|.+-+ ..++.++.|
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpvlEti 261 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPVLETI 261 (1230)
T ss_pred hhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC-cccchHHHH
Confidence 8776 67778888887755443 2347999999999853333321 2366789999999996554 478888888
Q ss_pred HHhCC-------CCCcEEEEEecCChHHHHHHHHhccCC--ceEeeccCCcccccCCeEEEEEecc-Ccchh-----HHH
Q 007106 270 LERLP-------QNRQSMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGISLYSIATS-MYEKP-----SII 334 (618)
Q Consensus 270 l~~l~-------~~~~~l~lSAT~~~~~~~~~~~~l~~~--~~i~~~~~~~~~~~~~~~~~~~~~~-~~~k~-----~~l 334 (618)
+.+.. ...++|++|||+|+- .....|+.-+ ..+-...............+-.... ..... ...
T Consensus 262 VaRtlr~vessqs~IRivgLSATlPN~--eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~ 339 (1230)
T KOG0952|consen 262 VARTLRLVESSQSMIRIVGLSATLPNY--EDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCY 339 (1230)
T ss_pred HHHHHHHHHhhhhheEEEEeeccCCCH--HHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHH
Confidence 77653 467899999999983 4445565543 2221111111111111112211111 01111 123
Q ss_pred HHHHHHhccCCeEEEEecchhHHHHHHHHHHcc------------------------CCccccccCCCHHHHHHHHHHHh
Q 007106 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS------------------------YNCEPLHGDISQSQRERTLSAFR 390 (618)
Q Consensus 335 ~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~------------------------~~~~~lhg~~~~~~r~~i~~~f~ 390 (618)
..+++.+..+.+++|||.++......++.|.+. ....++|++|..++|..+++.|.
T Consensus 340 ~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~ 419 (1230)
T KOG0952|consen 340 DKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFK 419 (1230)
T ss_pred HHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHh
Confidence 455566677999999999999998888877541 12456799999999999999999
Q ss_pred cCCccEEEEccccccCCCCCCccEEE----EcCCCC------ChhHHHHhhhccCCC--CCcceEEEEecchhHHHHH
Q 007106 391 DGRFNILIATDVAARGLDVPNVDLII----HYELPN------TSETFVHRTGRTGRA--GKKGSAILIYTDQQARQVK 456 (618)
Q Consensus 391 ~g~~~vLVaT~~~~~Gidi~~~~~VI----~~~~p~------~~~~~~Qr~GR~gR~--g~~g~~~~~~~~~~~~~~~ 456 (618)
.|.++||+||.+++.|+|+|+-.++| .||... ++.+.+|..|||||. ...|.++++.+.+....+.
T Consensus 420 ~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~ 497 (1230)
T KOG0952|consen 420 EGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYE 497 (1230)
T ss_pred cCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHH
Confidence 99999999999999999998655555 244433 566789999999995 5678888888776554443
No 80
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=7.5e-32 Score=289.92 Aligned_cols=316 Identities=18% Similarity=0.255 Sum_probs=213.3
Q ss_pred CChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC--
Q 007106 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~-- 198 (618)
.++|+|.+++..+...+..|++++||+|||++|++|++..++. +..++|++|+++||.|+++++..++.
T Consensus 68 glrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~---------g~~V~VVTpn~yLA~Rdae~m~~l~~~L 138 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT---------GKGAMLVTTNDYLAKRDAEEMGPVYEWL 138 (762)
T ss_pred CCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc---------CCceEEeCCCHHHHHHHHHHHHHHHhhc
Confidence 3566777777666666668999999999999999998766543 55799999999999999999987654
Q ss_pred CCcEEEEEcCcc---hhhhhHHhhcCCCEEEEChHHH-HHHHHhc------CCCCCCccEEEEchhhhhccCC-------
Q 007106 199 SLDTICVYGGTP---ISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQMLSVG------- 261 (618)
Q Consensus 199 ~~~~~~~~g~~~---~~~~~~~l~~~~~Ilv~T~~~l-~~~l~~~------~~~l~~~~~vViDEaH~~~~~~------- 261 (618)
++.+.+.+.+.. .....+.....++|+++||++| .+++... ...++.+.++|+||||+++-..
T Consensus 139 GLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartplii 218 (762)
T TIGR03714 139 GLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVI 218 (762)
T ss_pred CCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeee
Confidence 355555554421 2222333446799999999999 5555332 2346789999999999984211
Q ss_pred ---------cHHHHHHHHHhCCCC--------CcEEEEEec---------------------------------------
Q 007106 262 ---------FAEDVEVILERLPQN--------RQSMMFSAT--------------------------------------- 285 (618)
Q Consensus 262 ---------~~~~~~~il~~l~~~--------~~~l~lSAT--------------------------------------- 285 (618)
....+..+...+... .+.+.+|-.
T Consensus 219 sg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d 298 (762)
T TIGR03714 219 SGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRN 298 (762)
T ss_pred eCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcC
Confidence 222333344444321 122222221
Q ss_pred ----------------------------------------------------------------------CChHHHHHHH
Q 007106 286 ----------------------------------------------------------------------MPPWIRSLTN 295 (618)
Q Consensus 286 ----------------------------------------------------------------------~~~~~~~~~~ 295 (618)
......++..
T Consensus 299 ~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~ 378 (762)
T TIGR03714 299 KDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIE 378 (762)
T ss_pred CceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHH
Confidence 1111111110
Q ss_pred HhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHH-hccCCeEEEEecchhHHHHHHHHHHc-cCCcccc
Q 007106 296 KYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPL 373 (618)
Q Consensus 296 ~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~-~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~l 373 (618)
.| +...+ .++...+....... ..+.....+|...+...+.+ +..+.++||||++++.++.+++.|.+ .+++..+
T Consensus 379 iY--~l~v~-~IPt~kp~~r~d~~-d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L 454 (762)
T TIGR03714 379 TY--SLSVV-KIPTNKPIIRIDYP-DKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLL 454 (762)
T ss_pred Hh--CCCEE-EcCCCCCeeeeeCC-CeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEe
Confidence 00 00000 00000000000000 01223334456655555544 45688999999999999999999966 4999999
Q ss_pred ccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCC---------CccEEEEcCCCCChhHHHHhhhccCCCCCcceEE
Q 007106 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP---------NVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444 (618)
Q Consensus 374 hg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~---------~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~ 444 (618)
|+++.+.++..+...++.+ .|+|||++++||+||+ .+.+|+++++|....+ .||+||+||.|.+|.++
T Consensus 455 ~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~ 531 (762)
T TIGR03714 455 NAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQ 531 (762)
T ss_pred cCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEE
Confidence 9999998887777766666 6999999999999999 8999999999998776 99999999999999999
Q ss_pred EEecchhH
Q 007106 445 LIYTDQQA 452 (618)
Q Consensus 445 ~~~~~~~~ 452 (618)
+|++.+|.
T Consensus 532 ~~is~eD~ 539 (762)
T TIGR03714 532 FFVSLEDD 539 (762)
T ss_pred EEEccchh
Confidence 99987654
No 81
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.6e-31 Score=301.10 Aligned_cols=303 Identities=22% Similarity=0.351 Sum_probs=207.8
Q ss_pred hHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc----HHHHHHHHHHHHHhC-
Q 007106 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT----RELAKQVEKEFHESA- 197 (618)
Q Consensus 123 ~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt----~~La~q~~~~l~~~~- 197 (618)
..+..+.++.+..++.++|+++||||||+ .+|.+.... ..+....+++..|. ++||.++++++...+
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~------g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG 147 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLEL------GRGVKGLIGHTQPRRLAARTVANRIAEELETELG 147 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHc------CCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhc
Confidence 44455666777777788999999999998 456432211 11223356666785 477777777776422
Q ss_pred CCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhh-hhccCCcHHH-HHHHHHhCCC
Q 007106 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD-QMLSVGFAED-VEVILERLPQ 275 (618)
Q Consensus 198 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH-~~~~~~~~~~-~~~il~~l~~ 275 (618)
..+.+.+ ... ......++|+|+|+++|++.+..+.. +.++++||||||| ++++.+|... ++.++.. .+
T Consensus 148 ~~VGY~v-----rf~---~~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rp 217 (1294)
T PRK11131 148 GCVGYKV-----RFN---DQVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RP 217 (1294)
T ss_pred ceeceee-----cCc---cccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhhc-CC
Confidence 1111111 111 11234579999999999999887654 8999999999999 6788777643 3333322 35
Q ss_pred CCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcc---hhHHHHHHH---HHh--ccCCeE
Q 007106 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE---KPSIIGQLI---TEH--AKGGKC 347 (618)
Q Consensus 276 ~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---k~~~l~~ll---~~~--~~~~~~ 347 (618)
+.|+|+||||++. ..+... +.+...+.+.... ..++.++....... +...+..++ ..+ ...+.+
T Consensus 218 dlKvILmSATid~--e~fs~~-F~~apvI~V~Gr~-----~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdI 289 (1294)
T PRK11131 218 DLKVIITSATIDP--ERFSRH-FNNAPIIEVSGRT-----YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDI 289 (1294)
T ss_pred CceEEEeeCCCCH--HHHHHH-cCCCCEEEEcCcc-----ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCE
Confidence 7899999999975 344444 4443344432211 12333333322211 222333332 221 245789
Q ss_pred EEEecchhHHHHHHHHHHcc-C---CccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcC----
Q 007106 348 IVFTQTKRDADRLAHAMAKS-Y---NCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYE---- 419 (618)
Q Consensus 348 lVf~~~~~~~~~l~~~L~~~-~---~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~---- 419 (618)
||||++.++++.+++.|.+. + .+..+|+++++++|.++++. .+..+|||||+++++|||||++++||+++
T Consensus 290 LVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~ 367 (1294)
T PRK11131 290 LIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARI 367 (1294)
T ss_pred EEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccc
Confidence 99999999999999999753 3 36689999999999999886 47889999999999999999999999985
Q ss_pred -----------CC---CChhHHHHhhhccCCCCCcceEEEEecchhHHH
Q 007106 420 -----------LP---NTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454 (618)
Q Consensus 420 -----------~p---~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 454 (618)
+| .+.++|.||+||+||. .+|.||.+|++.+...
T Consensus 368 ~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~ 415 (1294)
T PRK11131 368 SRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLS 415 (1294)
T ss_pred cccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHh
Confidence 23 3557899999999999 7999999999876553
No 82
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=2.8e-31 Score=283.54 Aligned_cols=316 Identities=20% Similarity=0.234 Sum_probs=223.6
Q ss_pred CCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC
Q 007106 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
+.. |++.|..+...+..++ |++++||+|||++|.+|++...+. +..++||+||++||.|.++++..++
T Consensus 54 g~~-p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~---------G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 54 GMR-PFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT---------GKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred CCC-ccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh---------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 443 8888888888777654 999999999999999999655444 5579999999999999999999987
Q ss_pred CC--CcEEEEEcCcchhhhhHHhhcCCCEEEEChHHH-HHHHHhc------CCCCCCccEEEEchhhhhccCC-------
Q 007106 198 PS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQMLSVG------- 261 (618)
Q Consensus 198 ~~--~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l-~~~l~~~------~~~l~~~~~vViDEaH~~~~~~------- 261 (618)
.. +.+.+++++.+...+... ..++|+|+||.+| ++++... .+.++.+.++||||+|+++-..
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLii 199 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLII 199 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhh
Confidence 64 677888888775544333 3489999999999 8888765 2457889999999999874210
Q ss_pred ---------cHHHHHHHHHhCCCC--------C-----------------------------------------------
Q 007106 262 ---------FAEDVEVILERLPQN--------R----------------------------------------------- 277 (618)
Q Consensus 262 ---------~~~~~~~il~~l~~~--------~----------------------------------------------- 277 (618)
.......+...+..+ .
T Consensus 200 sg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d 279 (745)
T TIGR00963 200 SGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKD 279 (745)
T ss_pred cCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcC
Confidence 001111111111100 0
Q ss_pred --------------------------------------------------------------cEEEEEecCChHHHHHHH
Q 007106 278 --------------------------------------------------------------QSMMFSATMPPWIRSLTN 295 (618)
Q Consensus 278 --------------------------------------------------------------~~l~lSAT~~~~~~~~~~ 295 (618)
++..||.|......++..
T Consensus 280 ~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~ 359 (745)
T TIGR00963 280 VDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEK 359 (745)
T ss_pred CcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHH
Confidence 122333333222222211
Q ss_pred HhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHH-HHHHHHhccCCeEEEEecchhHHHHHHHHHHc-cCCcccc
Q 007106 296 KYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII-GQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPL 373 (618)
Q Consensus 296 ~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l-~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~l 373 (618)
.|- ...+. ++...+......... +..+..+|...+ ..+.+.+.++.++||||++++.++.+++.|.+ .+++..+
T Consensus 360 iY~--l~vv~-IPtnkp~~R~d~~d~-i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~L 435 (745)
T TIGR00963 360 IYN--LEVVV-VPTNRPVIRKDLSDL-VYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVL 435 (745)
T ss_pred HhC--CCEEE-eCCCCCeeeeeCCCe-EEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEe
Confidence 111 11111 111111111111111 112233344444 44555567789999999999999999999976 5899999
Q ss_pred ccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCC-------ccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEE
Q 007106 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN-------VDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446 (618)
Q Consensus 374 hg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~-------~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~ 446 (618)
|++ +.+|+..+..|..+...|+|||++++||+||+. ..+||+++.|.+...|.|++||+||.|.+|.+.+|
T Consensus 436 na~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ 513 (745)
T TIGR00963 436 NAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFF 513 (745)
T ss_pred eCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEE
Confidence 998 889999999999999999999999999999998 55999999999999999999999999999999999
Q ss_pred ecchhHH
Q 007106 447 YTDQQAR 453 (618)
Q Consensus 447 ~~~~~~~ 453 (618)
++.+|.-
T Consensus 514 ls~eD~l 520 (745)
T TIGR00963 514 LSLEDNL 520 (745)
T ss_pred EeccHHH
Confidence 9877543
No 83
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=3.8e-31 Score=294.38 Aligned_cols=329 Identities=16% Similarity=0.211 Sum_probs=214.4
Q ss_pred CCChHHHHHHHHHHhCC--CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC
Q 007106 120 SKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~--~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
..|.|||.+++..++.. ..+||..++|.|||+.+.+.+...+.. +...++|||||. .|..||..++.+.+
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-------g~~~rvLIVvP~-sL~~QW~~El~~kF 222 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-------GRAERVLILVPE-TLQHQWLVEMLRRF 222 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-------CCCCcEEEEcCH-HHHHHHHHHHHHHh
Confidence 34899999998887654 369999999999999886655544433 234579999997 99999999998766
Q ss_pred CCCcEEEEEcCcchhhhhH--HhhcCCCEEEEChHHHHHHHH-hcCCCCCCccEEEEchhhhhccCC-cHHHHHHHHHhC
Q 007106 198 PSLDTICVYGGTPISHQMR--ALDYGVDAVVGTPGRVIDLIK-RNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERL 273 (618)
Q Consensus 198 ~~~~~~~~~g~~~~~~~~~--~l~~~~~Ilv~T~~~l~~~l~-~~~~~l~~~~~vViDEaH~~~~~~-~~~~~~~il~~l 273 (618)
. +...++........... ..-...+++|+|++.+...-. ...+.-.++++|||||||++.... ......+.+..+
T Consensus 223 ~-l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~L 301 (956)
T PRK04914 223 N-LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQL 301 (956)
T ss_pred C-CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHH
Confidence 3 44444332221110000 011236899999998864211 112223579999999999986321 111112333333
Q ss_pred -CCCCcEEEEEecCCh-HHHH------------------H-------------HHHhccCCc----------------eE
Q 007106 274 -PQNRQSMMFSATMPP-WIRS------------------L-------------TNKYLKNPL----------------TV 304 (618)
Q Consensus 274 -~~~~~~l~lSAT~~~-~~~~------------------~-------------~~~~l~~~~----------------~i 304 (618)
.....+|+|||||.. ...+ + +..++.... .+
T Consensus 302 a~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~ 381 (956)
T PRK04914 302 AEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDI 381 (956)
T ss_pred hhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccch
Confidence 234679999999842 0000 0 000000000 00
Q ss_pred --------------------------------eec-cCCc---ccc-cCCeEEEEEe-----------------------
Q 007106 305 --------------------------------DLV-GDSD---QKL-ADGISLYSIA----------------------- 324 (618)
Q Consensus 305 --------------------------------~~~-~~~~---~~~-~~~~~~~~~~----------------------- 324 (618)
.+. .... ... ......+.+.
T Consensus 382 ~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~p 461 (956)
T PRK04914 382 EPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYP 461 (956)
T ss_pred hHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCH
Confidence 000 0000 000 0000011010
Q ss_pred -------------ccCcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHc--cCCccccccCCCHHHHHHHHHHH
Q 007106 325 -------------TSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK--SYNCEPLHGDISQSQRERTLSAF 389 (618)
Q Consensus 325 -------------~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~--~~~~~~lhg~~~~~~r~~i~~~f 389 (618)
.....|...+.++++.. ...|+||||+++..++.+++.|.+ .+.+..+||+|++.+|+++++.|
T Consensus 462 e~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F 540 (956)
T PRK04914 462 EQIYQEFEDNATWWNFDPRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYF 540 (956)
T ss_pred HHHHHHHhhhhhccccCHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHH
Confidence 01122444555555554 367999999999999999999953 48899999999999999999999
Q ss_pred hcC--CccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHH
Q 007106 390 RDG--RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458 (618)
Q Consensus 390 ~~g--~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 458 (618)
+++ .+.|||||+++++|+|++.+++||+||+||+++.|.||+||++|.|+++.+.+++...+....+.|
T Consensus 541 ~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i 611 (956)
T PRK04914 541 ADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERL 611 (956)
T ss_pred hcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHH
Confidence 984 599999999999999999999999999999999999999999999999887777654433333333
No 84
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=3e-30 Score=284.06 Aligned_cols=312 Identities=20% Similarity=0.256 Sum_probs=219.1
Q ss_pred CCCChHHHHHHHHHHhCC---CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007106 119 ISKLFPIQKAVLEPAMQG---RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~---~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
...|+++|+++++.+.++ +++++.++||||||.+|+.++...+.+ +.++||++|+++|+.|+++.+++
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---------g~~vLvLvPt~~L~~Q~~~~l~~ 212 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---------GKQALVLVPEIALTPQMLARFRA 212 (679)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---------CCeEEEEeCcHHHHHHHHHHHHH
Confidence 346999999999999874 789999999999999998887766643 67899999999999999999998
Q ss_pred hCCCCcEEEEEcCcchhhhhHH----hhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCc------HHH
Q 007106 196 SAPSLDTICVYGGTPISHQMRA----LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF------AED 265 (618)
Q Consensus 196 ~~~~~~~~~~~g~~~~~~~~~~----l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~------~~~ 265 (618)
.+. ..+..++++.+..++.+. ....++|||+|+..+. ..+.++++|||||+|...-... ...
T Consensus 213 ~fg-~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~ 284 (679)
T PRK05580 213 RFG-APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARD 284 (679)
T ss_pred HhC-CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHH
Confidence 774 678888888765544332 2345899999998764 3478899999999997643221 112
Q ss_pred HHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEecc--C---c-chhHHHHHHHH
Q 007106 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS--M---Y-EKPSIIGQLIT 339 (618)
Q Consensus 266 ~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~---~-~k~~~l~~ll~ 339 (618)
+ .++.....+.++|++||||+.+....+.. .....+.+...........+........ . . -...++..+.+
T Consensus 285 v-a~~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~ 361 (679)
T PRK05580 285 L-AVVRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQ 361 (679)
T ss_pred H-HHHHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHH
Confidence 2 22333456889999999988655544321 1111222211111111111211111000 0 0 01223344444
Q ss_pred HhccCCeEEEEecchh------------------------------------------------------------HHHH
Q 007106 340 EHAKGGKCIVFTQTKR------------------------------------------------------------DADR 359 (618)
Q Consensus 340 ~~~~~~~~lVf~~~~~------------------------------------------------------------~~~~ 359 (618)
....++++|||+|.+. -++.
T Consensus 362 ~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~ 441 (679)
T PRK05580 362 RLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTER 441 (679)
T ss_pred HHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHH
Confidence 5556779999988531 3457
Q ss_pred HHHHHHcc---CCccccccCCCH--HHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCCC------------
Q 007106 360 LAHAMAKS---YNCEPLHGDISQ--SQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN------------ 422 (618)
Q Consensus 360 l~~~L~~~---~~~~~lhg~~~~--~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~------------ 422 (618)
+++.|.+. .++..+|+++.+ .+++++++.|++++.+|||+|+++++|+|+|++++|+++|++.
T Consensus 442 ~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er 521 (679)
T PRK05580 442 LEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASER 521 (679)
T ss_pred HHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHH
Confidence 77777663 567888999864 6789999999999999999999999999999999997776653
Q ss_pred ChhHHHHhhhccCCCCCcceEEEEecch
Q 007106 423 TSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 423 ~~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
....|+|++||+||.++.|.+++.....
T Consensus 522 ~~~~l~q~~GRagR~~~~g~viiqT~~p 549 (679)
T PRK05580 522 TFQLLTQVAGRAGRAEKPGEVLIQTYHP 549 (679)
T ss_pred HHHHHHHHHhhccCCCCCCEEEEEeCCC
Confidence 2357899999999999999999776543
No 85
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=1.8e-30 Score=272.76 Aligned_cols=296 Identities=23% Similarity=0.314 Sum_probs=202.6
Q ss_pred CCChHHHHHHHHHHhC----CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007106 120 SKLFPIQKAVLEPAMQ----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~----~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
..|++||++++..+.+ .+..++++|||+|||++++..+... ...+|||||+++|+.||++.+.+
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~------------~~~~Lvlv~~~~L~~Qw~~~~~~ 102 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL------------KRSTLVLVPTKELLDQWAEALKK 102 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh------------cCCEEEEECcHHHHHHHHHHHHH
Confidence 4599999999999998 7889999999999999886555443 33499999999999999988887
Q ss_pred hCCCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCC
Q 007106 196 SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275 (618)
Q Consensus 196 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~ 275 (618)
.+........+++..... .. ..|+|+|.+.+........+....+++||+||||++.+. ....+...+..
T Consensus 103 ~~~~~~~~g~~~~~~~~~-----~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~----~~~~~~~~~~~ 172 (442)
T COG1061 103 FLLLNDEIGIYGGGEKEL-----EP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP----SYRRILELLSA 172 (442)
T ss_pred hcCCccccceecCceecc-----CC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcH----HHHHHHHhhhc
Confidence 764332233333332111 11 469999999997642112233447999999999998543 33444444433
Q ss_pred CCcEEEEEecCChHHHHHHHHhc--cCCceEeeccCC--cccccCCeEEEEEe---------------------------
Q 007106 276 NRQSMMFSATMPPWIRSLTNKYL--KNPLTVDLVGDS--DQKLADGISLYSIA--------------------------- 324 (618)
Q Consensus 276 ~~~~l~lSAT~~~~~~~~~~~~l--~~~~~i~~~~~~--~~~~~~~~~~~~~~--------------------------- 324 (618)
...+|+|||||+.........++ ..+..+...... .......+....+.
T Consensus 173 ~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 252 (442)
T COG1061 173 AYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT 252 (442)
T ss_pred ccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh
Confidence 33399999998743311111111 111122110000 00000011111111
Q ss_pred -----------ccCcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHccCCccccccCCCHHHHHHHHHHHhcCC
Q 007106 325 -----------TSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393 (618)
Q Consensus 325 -----------~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~i~~~f~~g~ 393 (618)
.....+...+..++..+..+.+++|||.++.+++.++..+...--+..+.+..+..+|+.+++.|+.+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~~il~~fr~g~ 332 (442)
T COG1061 253 LRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREAILERFRTGG 332 (442)
T ss_pred hhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHHcCC
Confidence 011112222233333332467999999999999999999965422788999999999999999999999
Q ss_pred ccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCC
Q 007106 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRA 437 (618)
Q Consensus 394 ~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~ 437 (618)
+++||++.++.+|+|+|+++++|...+..+...|+||+||+.|.
T Consensus 333 ~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 333 IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred CCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 99999999999999999999999999999999999999999993
No 86
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=1.5e-29 Score=286.30 Aligned_cols=306 Identities=21% Similarity=0.311 Sum_probs=210.2
Q ss_pred HHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEE
Q 007106 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTI 203 (618)
Q Consensus 124 ~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~ 203 (618)
.+..+.+..+..++.+||+++||||||.. +|.+..-. ..+...++++..|.+.-|..+++.+.+... ..+.
T Consensus 70 ~~~~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~------~~~~~~~I~~tQPRRlAA~svA~RvA~elg-~~lG 140 (1283)
T TIGR01967 70 AKREDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLEL------GRGSHGLIGHTQPRRLAARTVAQRIAEELG-TPLG 140 (1283)
T ss_pred HHHHHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHc------CCCCCceEecCCccHHHHHHHHHHHHHHhC-CCcc
Confidence 33456666777778899999999999984 45432211 112234677888999888888877766442 2222
Q ss_pred EEEcCc-chhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhh-hhccCCcHHH-HHHHHHhCCCCCcEE
Q 007106 204 CVYGGT-PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD-QMLSVGFAED-VEVILERLPQNRQSM 280 (618)
Q Consensus 204 ~~~g~~-~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH-~~~~~~~~~~-~~~il~~l~~~~~~l 280 (618)
...|.. .... .......|+|+|++.|++.+..+.. +.++++|||||+| +.++.++... ++.++.. .++.++|
T Consensus 141 ~~VGY~vR~~~---~~s~~T~I~~~TdGiLLr~l~~d~~-L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-rpdLKlI 215 (1283)
T TIGR01967 141 EKVGYKVRFHD---QVSSNTLVKLMTDGILLAETQQDRF-LSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKII 215 (1283)
T ss_pred eEEeeEEcCCc---ccCCCceeeeccccHHHHHhhhCcc-cccCcEEEEcCcchhhccchhHHHHHHHHHhh-CCCCeEE
Confidence 222211 1111 1234578999999999998877654 8899999999999 6888777654 4555433 4688999
Q ss_pred EEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccC------cchhHHHHHHHHHh--ccCCeEEEEec
Q 007106 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM------YEKPSIIGQLITEH--AKGGKCIVFTQ 352 (618)
Q Consensus 281 ~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~------~~k~~~l~~ll~~~--~~~~~~lVf~~ 352 (618)
+||||++. ..+... +.+...+.+.... ..+...+..... .++...+...+.+. ...+.+|||++
T Consensus 216 lmSATld~--~~fa~~-F~~apvI~V~Gr~-----~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLp 287 (1283)
T TIGR01967 216 ITSATIDP--ERFSRH-FNNAPIIEVSGRT-----YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLP 287 (1283)
T ss_pred EEeCCcCH--HHHHHH-hcCCCEEEECCCc-----ccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCC
Confidence 99999975 344444 4443344432211 112222222211 11222233333322 13578999999
Q ss_pred chhHHHHHHHHHHcc----CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCC-------
Q 007106 353 TKRDADRLAHAMAKS----YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELP------- 421 (618)
Q Consensus 353 ~~~~~~~l~~~L~~~----~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p------- 421 (618)
+..+++.+++.|.+. +.+..+||.+++++|+++++.+ +..+|||||+++++|||||++++||+++.+
T Consensus 288 g~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~ 365 (1283)
T TIGR01967 288 GEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSY 365 (1283)
T ss_pred CHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCcccccccc
Confidence 999999999999753 3477899999999999987654 347899999999999999999999998843
Q ss_pred -----------CChhHHHHhhhccCCCCCcceEEEEecchhHHH
Q 007106 422 -----------NTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454 (618)
Q Consensus 422 -----------~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 454 (618)
.|.++|.||+||+||.+ +|.||.+|++.+...
T Consensus 366 ~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 366 RTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred ccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 25679999999999996 999999999876543
No 87
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=7.8e-29 Score=263.34 Aligned_cols=289 Identities=22% Similarity=0.265 Sum_probs=197.0
Q ss_pred EEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHH--
Q 007106 140 IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA-- 217 (618)
Q Consensus 140 ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~-- 217 (618)
||.++||||||.+|+..+...+.+ +.++||++|+++|+.|+++.+++.+. ..+.++++..+..++.+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~---------g~~vLvlvP~i~L~~Q~~~~l~~~f~-~~v~vlhs~~~~~er~~~~~ 70 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL---------GKSVLVLVPEIALTPQMIQRFKYRFG-SQVAVLHSGLSDSEKLQAWR 70 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc---------CCeEEEEeCcHHHHHHHHHHHHHHhC-CcEEEEECCCCHHHHHHHHH
Confidence 578999999999997766555433 66899999999999999999998774 567788887765544332
Q ss_pred --hhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCC-----c-HHHHHHHHHhCCCCCcEEEEEecCChH
Q 007106 218 --LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-----F-AEDVEVILERLPQNRQSMMFSATMPPW 289 (618)
Q Consensus 218 --l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~-----~-~~~~~~il~~l~~~~~~l~lSAT~~~~ 289 (618)
....++|||+|+..+. ..+.++++|||||+|...-+. + ...+... .....+.++|++||||+.+
T Consensus 71 ~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~-ra~~~~~~vil~SATPsle 142 (505)
T TIGR00595 71 KVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVY-RAKKFNCPVVLGSATPSLE 142 (505)
T ss_pred HHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHH-HHHhcCCCEEEEeCCCCHH
Confidence 2235899999998764 247889999999999765322 1 1122222 2333678999999998865
Q ss_pred HHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccC--cch-hHHHHHHHHHhccCCeEEEEecchhH----------
Q 007106 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM--YEK-PSIIGQLITEHAKGGKCIVFTQTKRD---------- 356 (618)
Q Consensus 290 ~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~k-~~~l~~ll~~~~~~~~~lVf~~~~~~---------- 356 (618)
....... .....+.+...........+......... ... ..++..+.+...+++++|||+|++..
T Consensus 143 s~~~~~~--g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg 220 (505)
T TIGR00595 143 SYHNAKQ--KAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCG 220 (505)
T ss_pred HHHHHhc--CCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCc
Confidence 4443321 11111111111111111112221111100 011 22344444555667899999876643
Q ss_pred --------------------------------------------------HHHHHHHHHcc---CCccccccCCCHHHH-
Q 007106 357 --------------------------------------------------ADRLAHAMAKS---YNCEPLHGDISQSQR- 382 (618)
Q Consensus 357 --------------------------------------------------~~~l~~~L~~~---~~~~~lhg~~~~~~r- 382 (618)
.+.+++.|.+. .++..+|+++++.++
T Consensus 221 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~ 300 (505)
T TIGR00595 221 YILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGA 300 (505)
T ss_pred CccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccH
Confidence 47777888765 457788999887766
Q ss_pred -HHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCCC------------ChhHHHHhhhccCCCCCcceEEEEec
Q 007106 383 -ERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN------------TSETFVHRTGRTGRAGKKGSAILIYT 448 (618)
Q Consensus 383 -~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~------------~~~~~~Qr~GR~gR~g~~g~~~~~~~ 448 (618)
+++++.|++|+.+|||+|+++++|+|+|++++|+++|.+. ....|+|++||+||.++.|.+++...
T Consensus 301 ~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~ 379 (505)
T TIGR00595 301 HEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTY 379 (505)
T ss_pred HHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeC
Confidence 8999999999999999999999999999999987655542 24678999999999999999986553
No 88
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=6.2e-29 Score=261.39 Aligned_cols=314 Identities=20% Similarity=0.265 Sum_probs=233.0
Q ss_pred cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007106 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
.-.++|-+.|++||-++.++.+++|.|+|.+|||+++-.++...-.. ..++++..|-++|-+|.+++|+..
T Consensus 293 ~~pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h---------~TR~iYTSPIKALSNQKfRDFk~t 363 (1248)
T KOG0947|consen 293 IYPFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKH---------MTRTIYTSPIKALSNQKFRDFKET 363 (1248)
T ss_pred hCCCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhh---------ccceEecchhhhhccchHHHHHHh
Confidence 34577999999999999999999999999999999988776544322 568999999999999999999999
Q ss_pred CCCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCC
Q 007106 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (618)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~ 276 (618)
|.+.. +++|+.. +...+.++|+|.+.|..+|-+..-.++++.+||+||+|.+.+...+..|++++-.+|++
T Consensus 364 F~Dvg--LlTGDvq-------inPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~H 434 (1248)
T KOG0947|consen 364 FGDVG--LLTGDVQ-------INPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRH 434 (1248)
T ss_pred ccccc--eeeccee-------eCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeecccc
Confidence 87665 6777765 34457899999999999998888779999999999999999999999999999999999
Q ss_pred CcEEEEEecCChHHHHHHHHhcc--CCceEeeccCCcccc-----------------------cCCeE----------EE
Q 007106 277 RQSMMFSATMPPWIRSLTNKYLK--NPLTVDLVGDSDQKL-----------------------ADGIS----------LY 321 (618)
Q Consensus 277 ~~~l~lSAT~~~~~~~~~~~~l~--~~~~i~~~~~~~~~~-----------------------~~~~~----------~~ 321 (618)
+++|++|||.|+..+- + .|.. ....+.++......+ ...+. .+
T Consensus 435 V~~IlLSATVPN~~EF-A-~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~ 512 (1248)
T KOG0947|consen 435 VNFILLSATVPNTLEF-A-DWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKF 512 (1248)
T ss_pred ceEEEEeccCCChHHH-H-HHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccc
Confidence 9999999999975432 2 1111 001111000000000 00000 00
Q ss_pred EE---------------------------e-ccCcchh--HHHHHHHHHhcc--CCeEEEEecchhHHHHHHHHHHc---
Q 007106 322 SI---------------------------A-TSMYEKP--SIIGQLITEHAK--GGKCIVFTQTKRDADRLAHAMAK--- 366 (618)
Q Consensus 322 ~~---------------------------~-~~~~~k~--~~l~~ll~~~~~--~~~~lVf~~~~~~~~~l~~~L~~--- 366 (618)
.. . ....++. ..+.+++....+ --+++|||.+++.|+..+++|..
T Consensus 513 ~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL 592 (1248)
T KOG0947|consen 513 VDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNL 592 (1248)
T ss_pred cccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCc
Confidence 00 0 0000011 234444444322 34899999999999999988853
Q ss_pred -------------------------------------cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCC
Q 007106 367 -------------------------------------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409 (618)
Q Consensus 367 -------------------------------------~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi 409 (618)
.-.++++|+++-+--++-++..|..|-++||+||.++++|||.
T Consensus 593 ~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNM 672 (1248)
T KOG0947|consen 593 TDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNM 672 (1248)
T ss_pred ccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCC
Confidence 0136678999999999999999999999999999999999999
Q ss_pred CCccEEEEcCC--------CCChhHHHHhhhccCCCC--CcceEEEEecch
Q 007106 410 PNVDLIIHYEL--------PNTSETFVHRTGRTGRAG--KKGSAILIYTDQ 450 (618)
Q Consensus 410 ~~~~~VI~~~~--------p~~~~~~~Qr~GR~gR~g--~~g~~~~~~~~~ 450 (618)
|.-.+|+.--. .-.+-+|.|+.|||||.| .+|++++++...
T Consensus 673 PARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 673 PARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred CceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 97666663111 126788999999999976 678888887644
No 89
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.96 E-value=2.7e-28 Score=232.19 Aligned_cols=200 Identities=44% Similarity=0.774 Sum_probs=177.3
Q ss_pred ccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEc
Q 007106 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA 180 (618)
Q Consensus 101 ~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~ 180 (618)
|+++++++.+.+.|...++..|+++|+++++.+.+++++++.+|||+|||++++++++..+.... ...+++++|++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~----~~~~~~viii~ 76 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP----KKDGPQALILA 76 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc----ccCCceEEEEc
Confidence 56889999999999999999999999999999999999999999999999999999998876631 12367899999
Q ss_pred CcHHHHHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhc
Q 007106 181 PTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 181 Pt~~La~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~ 258 (618)
|+++|+.|+.+.+.++.. .+.+..++++.........+...++|+|+||+.|.+.+......+.+++++|+||+|.+.
T Consensus 77 p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~ 156 (203)
T cd00268 77 PTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRML 156 (203)
T ss_pred CCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhh
Confidence 999999999999988754 566777888887766666666679999999999999998887888999999999999998
Q ss_pred cCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceE
Q 007106 259 SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304 (618)
Q Consensus 259 ~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i 304 (618)
+..+...+..++..++..++++++|||+++.+..+...++.++..+
T Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 157 DMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred ccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 8888999999999999999999999999999999998888877654
No 90
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.96 E-value=1.2e-27 Score=267.44 Aligned_cols=315 Identities=18% Similarity=0.259 Sum_probs=217.6
Q ss_pred CChHHHHHHHHHHh----CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007106 121 KLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~----~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
.|++||.+.+.++. .+.+.||+.++|.|||++++..+ ..+... .+....+|||||. ++..||.+++.++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL-~~L~~~-----~~~~gp~LIVvP~-SlL~nW~~Ei~kw 241 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLL-GYLHEY-----RGITGPHMVVAPK-STLGNWMNEIRRF 241 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHH-HHHHHh-----cCCCCCEEEEeCh-HHHHHHHHHHHHH
Confidence 68999999999875 46789999999999999875443 333221 1224568999995 8889999999999
Q ss_pred CCCCcEEEEEcCcchhhhhHH---hhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhC
Q 007106 197 APSLDTICVYGGTPISHQMRA---LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (618)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~---l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l 273 (618)
++.++++.+++.......... ....++|+|+|++.+...... +.-..+++|||||||++.+. ...+..++..+
T Consensus 242 ~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k~~W~~VIvDEAHrIKN~--~Sklskalr~L 317 (1033)
T PLN03142 242 CPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKRFSWRYIIIDEAHRIKNE--NSLLSKTMRLF 317 (1033)
T ss_pred CCCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hccCCCCEEEEcCccccCCH--HHHHHHHHHHh
Confidence 998888888876543322211 123589999999998764332 23346899999999998763 44555666666
Q ss_pred CCCCcEEEEEecCCh-HHHHHHHH--hc---------------c------------------CCceEeecc-CCcccccC
Q 007106 274 PQNRQSMMFSATMPP-WIRSLTNK--YL---------------K------------------NPLTVDLVG-DSDQKLAD 316 (618)
Q Consensus 274 ~~~~~~l~lSAT~~~-~~~~~~~~--~l---------------~------------------~~~~i~~~~-~~~~~~~~ 316 (618)
. ....++||+||.. ...++... |+ . .|..+.... +....++.
T Consensus 318 ~-a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPp 396 (1033)
T PLN03142 318 S-TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 396 (1033)
T ss_pred h-cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCC
Confidence 4 4456899999842 11111111 00 0 000000000 00000000
Q ss_pred CeEEE-E-------------------------------------------------------------EeccCcchhHHH
Q 007106 317 GISLY-S-------------------------------------------------------------IATSMYEKPSII 334 (618)
Q Consensus 317 ~~~~~-~-------------------------------------------------------------~~~~~~~k~~~l 334 (618)
..... . .......|..++
T Consensus 397 K~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lL 476 (1033)
T PLN03142 397 KKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLL 476 (1033)
T ss_pred ceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHH
Confidence 00000 0 000112344455
Q ss_pred HHHHHHhc-cCCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcC---CccEEEEccccccCCCC
Q 007106 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDG---RFNILIATDVAARGLDV 409 (618)
Q Consensus 335 ~~ll~~~~-~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g---~~~vLVaT~~~~~Gidi 409 (618)
..++..+. .+.++|||++....++.|.++|.. .+.+..+||.++..+|+.+++.|++. ...+|++|.+.+.|||+
T Consensus 477 dkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINL 556 (1033)
T PLN03142 477 DKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINL 556 (1033)
T ss_pred HHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCch
Confidence 55555443 467999999999999999999864 48899999999999999999999763 34679999999999999
Q ss_pred CCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEe
Q 007106 410 PNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447 (618)
Q Consensus 410 ~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~ 447 (618)
+.+++||+||++||+....|+++|++|.|++..|.++.
T Consensus 557 t~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyR 594 (1033)
T PLN03142 557 ATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 594 (1033)
T ss_pred hhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEE
Confidence 99999999999999999999999999999887766554
No 91
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.96 E-value=4e-27 Score=222.52 Aligned_cols=300 Identities=19% Similarity=0.288 Sum_probs=211.4
Q ss_pred CChHHHHHHHHHH----hCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007106 121 KLFPIQKAVLEPA----MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 121 ~l~~~Q~~~i~~i----~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
+|++.|+.+-+.+ .+.++.||.|-||+|||.... ..++.+++ .+..+.|..|....+.+++.+++..
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif-~~i~~al~--------~G~~vciASPRvDVclEl~~Rlk~a 167 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIF-QGIEQALN--------QGGRVCIASPRVDVCLELYPRLKQA 167 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhH-HHHHHHHh--------cCCeEEEecCcccchHHHHHHHHHh
Confidence 4899999876654 456789999999999997654 44444433 3789999999999999999999999
Q ss_pred CCCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHH-HHHhCCC
Q 007106 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV-ILERLPQ 275 (618)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~-il~~l~~ 275 (618)
|+..++.+++++.....+ .+++|+|..+|+++-+ .++++||||+|.+.-.. ...+.. +-+..+.
T Consensus 168 F~~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~-d~~L~~Av~~ark~ 232 (441)
T COG4098 168 FSNCDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSD-DQSLQYAVKKARKK 232 (441)
T ss_pred hccCCeeeEecCCchhcc-------ccEEEEehHHHHHHHh-------hccEEEEeccccccccC-CHHHHHHHHHhhcc
Confidence 999999999998874432 5899999999987644 57899999999764321 233333 3334455
Q ss_pred CCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcch------hHHHHHHHHHh-ccCCeEE
Q 007106 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK------PSIIGQLITEH-AKGGKCI 348 (618)
Q Consensus 276 ~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k------~~~l~~ll~~~-~~~~~~l 348 (618)
.--+|+||||+++..+..+.. ........+.........++.+........+ ...+..+++.. ..+.++|
T Consensus 233 ~g~~IylTATp~k~l~r~~~~---g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~l 309 (441)
T COG4098 233 EGATIYLTATPTKKLERKILK---GNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVL 309 (441)
T ss_pred cCceEEEecCChHHHHHHhhh---CCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEE
Confidence 677999999999865543322 2221111111111111111111111111111 12344555544 4578999
Q ss_pred EEecchhHHHHHHHHHHccCC---ccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCC--CC
Q 007106 349 VFTQTKRDADRLAHAMAKSYN---CEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELP--NT 423 (618)
Q Consensus 349 Vf~~~~~~~~~l~~~L~~~~~---~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p--~~ 423 (618)
||+++++..+.+++.|++.++ +..+|+. ...|.+.++.|++|+.++||+|.++|+|+.+|++++.|.-.-. .+
T Consensus 310 iF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfT 387 (441)
T COG4098 310 IFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFT 387 (441)
T ss_pred EEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCccccc
Confidence 999999999999999977654 4567776 4678889999999999999999999999999999987765444 47
Q ss_pred hhHHHHhhhccCCCC--CcceEEEEecc
Q 007106 424 SETFVHRTGRTGRAG--KKGSAILIYTD 449 (618)
Q Consensus 424 ~~~~~Qr~GR~gR~g--~~g~~~~~~~~ 449 (618)
-+.++|..||+||.- .+|.++.|..-
T Consensus 388 esaLVQIaGRvGRs~~~PtGdv~FFH~G 415 (441)
T COG4098 388 ESALVQIAGRVGRSLERPTGDVLFFHYG 415 (441)
T ss_pred HHHHHHHhhhccCCCcCCCCcEEEEecc
Confidence 888999999999963 45666655543
No 92
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=2.7e-27 Score=254.90 Aligned_cols=343 Identities=20% Similarity=0.297 Sum_probs=235.0
Q ss_pred CCHHHHHHHHHcCCCCChHHHHHHHHHHhCC-CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcC--CCCCCeEEEEcCc
Q 007106 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG--RGRNPLCLVLAPT 182 (618)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~-~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~--~~~~~~~lil~Pt 182 (618)
+|..-..++. +...|.++|..+.++++.. .+++++||||+|||.++++.|++.+..+..... .-...++++++|.
T Consensus 296 lP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPm 373 (1674)
T KOG0951|consen 296 LPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPM 373 (1674)
T ss_pred Ccchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeH
Confidence 4444444443 3445899999999998876 579999999999999999999999876544211 1124589999999
Q ss_pred HHHHHHHHHHHHHhCCCCcE--EEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhc--CCCCCCccEEEEchhhhhc
Q 007106 183 RELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN--ALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 183 ~~La~q~~~~l~~~~~~~~~--~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~--~~~l~~~~~vViDEaH~~~ 258 (618)
++|++.|...|.+.+..+++ .-+++......+. -....|+||||+...-.-++. ....+-++++||||+|.+
T Consensus 374 KaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLL- 449 (1674)
T KOG0951|consen 374 KALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLL- 449 (1674)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhc-
Confidence 99999999999988765554 4455554422211 123689999999985433331 122345789999999955
Q ss_pred cCCcHHHHHHHHHhCC-------CCCcEEEEEecCChHHHHHHHHhcc-CCceEeeccCCcccccCCeEEEEEeccCcch
Q 007106 259 SVGFAEDVEVILERLP-------QNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEK 330 (618)
Q Consensus 259 ~~~~~~~~~~il~~l~-------~~~~~l~lSAT~~~~~~~~~~~~l~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k 330 (618)
..+.++.++.+..+.. ..++++.+|||+|+- .....|+. ++..+-..+......+...+.+.+......+
T Consensus 450 hDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy--~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~ 527 (1674)
T KOG0951|consen 450 HDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY--EDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLK 527 (1674)
T ss_pred ccccchHHHHHHHHHHHHhhhcccCceeeeecccCCch--hhhHHHhccCcccccccCcccCcCCccceEeccccCCchH
Confidence 3447788877766552 367899999999984 33333333 2222211222222222233333333332222
Q ss_pred h------HHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHc--------------------------------------
Q 007106 331 P------SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-------------------------------------- 366 (618)
Q Consensus 331 ~------~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-------------------------------------- 366 (618)
. .....+++.. ..+++|||+.++++.-+.|..++.
T Consensus 528 ~~qamNe~~yeKVm~~a-gk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLL 606 (1674)
T KOG0951|consen 528 RFQAMNEACYEKVLEHA-GKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLL 606 (1674)
T ss_pred HHHHHHHHHHHHHHHhC-CCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHh
Confidence 2 2233344433 348999999999888777665542
Q ss_pred cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEE----EcCCC------CChhHHHHhhhccCC
Q 007106 367 SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLII----HYELP------NTSETFVHRTGRTGR 436 (618)
Q Consensus 367 ~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI----~~~~p------~~~~~~~Qr~GR~gR 436 (618)
.+..+.+|++|+..+|+.+++.|.+|.++|+|+|.++++|+|+|.-+++| .||+. .++.+.+|+.||+||
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragr 686 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGR 686 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCC
Confidence 12466789999999999999999999999999999999999999777666 35543 388899999999999
Q ss_pred CC--CcceEEEEecchhHHHHHH
Q 007106 437 AG--KKGSAILIYTDQQARQVKS 457 (618)
Q Consensus 437 ~g--~~g~~~~~~~~~~~~~~~~ 457 (618)
.. ..|..+++....+..+...
T Consensus 687 p~~D~~gegiiit~~se~qyyls 709 (1674)
T KOG0951|consen 687 PQYDTCGEGIIITDHSELQYYLS 709 (1674)
T ss_pred CccCcCCceeeccCchHhhhhHH
Confidence 64 5677777777766655444
No 93
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=3.2e-27 Score=242.78 Aligned_cols=313 Identities=21% Similarity=0.276 Sum_probs=233.2
Q ss_pred CCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC
Q 007106 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
-++.|-|.|+.+|..+-++.++|+.|.|.+|||.++-.+|...+.+ +.++|+..|-++|-+|.++++..-|
T Consensus 126 YPF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---------kQRVIYTSPIKALSNQKYREl~~EF 196 (1041)
T KOG0948|consen 126 YPFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE---------KQRVIYTSPIKALSNQKYRELLEEF 196 (1041)
T ss_pred CCcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh---------cCeEEeeChhhhhcchhHHHHHHHh
Confidence 3567999999999999999999999999999999999998888755 6689999999999999999998877
Q ss_pred CCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCC
Q 007106 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277 (618)
Q Consensus 198 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~ 277 (618)
.+ +.+.+|+.+ +...+..+|+|.+.|..++-+..-.++.+..||+||+|.|-+...+..|++-+-.+|.+.
T Consensus 197 ~D--VGLMTGDVT-------InP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~v 267 (1041)
T KOG0948|consen 197 KD--VGLMTGDVT-------INPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNV 267 (1041)
T ss_pred cc--cceeeccee-------eCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccc
Confidence 65 445566665 334578999999999998888776688999999999999999888899999888999999
Q ss_pred cEEEEEecCChHHHH--HHHHhccCCceEeeccCCcccccCC-eE-----EEEEeccC----------------------
Q 007106 278 QSMMFSATMPPWIRS--LTNKYLKNPLTVDLVGDSDQKLADG-IS-----LYSIATSM---------------------- 327 (618)
Q Consensus 278 ~~l~lSAT~~~~~~~--~~~~~l~~~~~i~~~~~~~~~~~~~-~~-----~~~~~~~~---------------------- 327 (618)
+.+++|||+|+..+- .+...-..|..+...+.....+... ++ .+.+....
T Consensus 268 r~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~ 347 (1041)
T KOG0948|consen 268 RFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESD 347 (1041)
T ss_pred eEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCc
Confidence 999999999985332 2222223444432221111111100 00 01111000
Q ss_pred ---------------------cchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-------------------
Q 007106 328 ---------------------YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS------------------- 367 (618)
Q Consensus 328 ---------------------~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~------------------- 367 (618)
.+...++..++.. +-.++|||+.++++|+.++-.+.+.
T Consensus 348 ~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~--~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi 425 (1041)
T KOG0948|consen 348 GKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMER--NYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAI 425 (1041)
T ss_pred cccccccccccCCcCCCCCCcccHHHHHHHHHhh--cCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHH
Confidence 0001122222222 3469999999999999998776441
Q ss_pred ---------------------CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEE----cCC--
Q 007106 368 ---------------------YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH----YEL-- 420 (618)
Q Consensus 368 ---------------------~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~----~~~-- 420 (618)
-.+.++|+++-+--++-|+-.|.+|-+++|.||.+++.|+|.|.-++|+. ||-
T Consensus 426 ~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~ 505 (1041)
T KOG0948|consen 426 DQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKK 505 (1041)
T ss_pred HhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcc
Confidence 12556799999999999999999999999999999999999997777664 221
Q ss_pred -CC-ChhHHHHhhhccCCCC--CcceEEEEecch
Q 007106 421 -PN-TSETFVHRTGRTGRAG--KKGSAILIYTDQ 450 (618)
Q Consensus 421 -p~-~~~~~~Qr~GR~gR~g--~~g~~~~~~~~~ 450 (618)
.| +.-+|+|+.|||||.| ..|.|++++++.
T Consensus 506 fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 506 FRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred eeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 12 5667999999999977 467788887754
No 94
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.95 E-value=6.8e-26 Score=258.31 Aligned_cols=316 Identities=17% Similarity=0.281 Sum_probs=198.7
Q ss_pred CCChHHHHHHHHHHhC-----CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007106 120 SKLFPIQKAVLEPAMQ-----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~-----~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~ 194 (618)
..+++||.+||..+.. .+.+||+++||||||.+++.. +..+++. ....++|||+|+++|+.|+.+.|.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~l-i~~L~~~------~~~~rVLfLvDR~~L~~Qa~~~F~ 484 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIAL-MYRLLKA------KRFRRILFLVDRSALGEQAEDAFK 484 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHH-HHHHHhc------CccCeEEEEecHHHHHHHHHHHHH
Confidence 4589999999987752 357999999999999886443 3444331 124589999999999999999998
Q ss_pred HhCCCCc--EEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhc-----CCCCCCccEEEEchhhhhccC-------
Q 007106 195 ESAPSLD--TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-----ALNLSEVQFVVLDEADQMLSV------- 260 (618)
Q Consensus 195 ~~~~~~~--~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~-----~~~l~~~~~vViDEaH~~~~~------- 260 (618)
.+..... +..+++..... .........|+|+|++.|...+... ...+.++++||+||||+-...
T Consensus 485 ~~~~~~~~~~~~i~~i~~L~--~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 485 DTKIEGDQTFASIYDIKGLE--DKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred hcccccccchhhhhchhhhh--hhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccc
Confidence 8632111 11111111000 0111234789999999997765321 234678999999999985311
Q ss_pred --------CcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHH--------------hccC---CceEeeccC-C----
Q 007106 261 --------GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNK--------------YLKN---PLTVDLVGD-S---- 310 (618)
Q Consensus 261 --------~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~--------------~l~~---~~~i~~~~~-~---- 310 (618)
.+...+..++..+ +...|+|||||......+... ++.+ |..+..... .
T Consensus 563 ~~~~~~~~~~~~~yr~iL~yF--dA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~ 640 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDYF--DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHF 640 (1123)
T ss_pred hhccchhhhHHHHHHHHHhhc--CccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccc
Confidence 1245677777765 357899999997543332211 1111 111111000 0
Q ss_pred --cc--c-cc---CCeEEEEEecc------Ccch--------hHHHHHHHHHhc--cCCeEEEEecchhHHHHHHHHHHc
Q 007106 311 --DQ--K-LA---DGISLYSIATS------MYEK--------PSIIGQLITEHA--KGGKCIVFTQTKRDADRLAHAMAK 366 (618)
Q Consensus 311 --~~--~-~~---~~~~~~~~~~~------~~~k--------~~~l~~ll~~~~--~~~~~lVf~~~~~~~~~l~~~L~~ 366 (618)
.. . .. ..+........ ..++ ..++..+++... ...++||||.++++|+.+++.|.+
T Consensus 641 ~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~ 720 (1123)
T PRK11448 641 EKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKE 720 (1123)
T ss_pred cccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHH
Confidence 00 0 00 00000000000 0000 001112222211 246999999999999999988754
Q ss_pred cC----------CccccccCCCHHHHHHHHHHHhcCCc-cEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccC
Q 007106 367 SY----------NCEPLHGDISQSQRERTLSAFRDGRF-NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTG 435 (618)
Q Consensus 367 ~~----------~~~~lhg~~~~~~r~~i~~~f~~g~~-~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~g 435 (618)
.+ .+..+|++++ +++.+++.|+++.. +|+|+++++.+|+|+|.+++||++.++.|...|+|++||+.
T Consensus 721 ~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgt 798 (1123)
T PRK11448 721 AFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRAT 798 (1123)
T ss_pred HHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhc
Confidence 21 2445788864 56789999999887 68999999999999999999999999999999999999999
Q ss_pred CCCC---cceEEEEec
Q 007106 436 RAGK---KGSAILIYT 448 (618)
Q Consensus 436 R~g~---~g~~~~~~~ 448 (618)
|.-. +..++++..
T Consensus 799 R~~~~~~K~~f~I~D~ 814 (1123)
T PRK11448 799 RLCPEIGKTHFRIFDA 814 (1123)
T ss_pred cCCccCCCceEEEEeh
Confidence 9643 334444443
No 95
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=7.8e-26 Score=245.18 Aligned_cols=316 Identities=21% Similarity=0.255 Sum_probs=212.3
Q ss_pred ChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC--C
Q 007106 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--S 199 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~--~ 199 (618)
+++.|. +-.+.-.+.-|..++||+|||++|.+|++..++. +..++||+||++||.|.++++..++. +
T Consensus 83 ~ydvQl--iGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~---------G~~V~VvTpn~yLA~qd~e~m~~l~~~lG 151 (896)
T PRK13104 83 HFDVQL--IGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAIS---------GRGVHIVTVNDYLAKRDSQWMKPIYEFLG 151 (896)
T ss_pred cchHHH--hhhhhhccCccccccCCCCchHHHHHHHHHHHhc---------CCCEEEEcCCHHHHHHHHHHHHHHhcccC
Confidence 455554 4333334457899999999999999999977654 45799999999999999999998875 4
Q ss_pred CcEEEEEcCcchhhhhHHhhcCCCEEEEChHHH-HHHHHhc-CCCC-----CCccEEEEchhhhhccC------------
Q 007106 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN-ALNL-----SEVQFVVLDEADQMLSV------------ 260 (618)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l-~~~l~~~-~~~l-----~~~~~vViDEaH~~~~~------------ 260 (618)
+.+.+++++.+...+.... .++|+|+||..| ++++... .+.+ +.+.++||||||+++=.
T Consensus 152 Ltv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~ 229 (896)
T PRK13104 152 LTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAA 229 (896)
T ss_pred ceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCC
Confidence 6778888887766554433 589999999999 8888776 2333 58999999999987521
Q ss_pred ----CcHHHHHHHHHhCCCC--------------CcEEEEEecCChHHHHHH------------------------H---
Q 007106 261 ----GFAEDVEVILERLPQN--------------RQSMMFSATMPPWIRSLT------------------------N--- 295 (618)
Q Consensus 261 ----~~~~~~~~il~~l~~~--------------~~~l~lSAT~~~~~~~~~------------------------~--- 295 (618)
.....+..++..+... .+.+.+|-.-...++.++ .
T Consensus 230 ~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL 309 (896)
T PRK13104 230 EDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAAL 309 (896)
T ss_pred ccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHH
Confidence 1223333333433221 223333332111111111 0
Q ss_pred --H-hccCCc-------eEeeccCCcc-----------------------------------------------------
Q 007106 296 --K-YLKNPL-------TVDLVGDSDQ----------------------------------------------------- 312 (618)
Q Consensus 296 --~-~l~~~~-------~i~~~~~~~~----------------------------------------------------- 312 (618)
. ++.... .+.+++...-
T Consensus 310 ~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa 389 (896)
T PRK13104 310 KAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTA 389 (896)
T ss_pred HHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCC
Confidence 0 011000 0111110000
Q ss_pred ----------------cccCCeEE------EEEeccCcchhHH-HHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-C
Q 007106 313 ----------------KLADGISL------YSIATSMYEKPSI-IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-Y 368 (618)
Q Consensus 313 ----------------~~~~~~~~------~~~~~~~~~k~~~-l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~ 368 (618)
.++.+.+. ..+..+..+|... +..+.+.+..+.++||||++++.++.+++.|.+. +
T Consensus 390 ~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi 469 (896)
T PRK13104 390 DTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENI 469 (896)
T ss_pred hhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCC
Confidence 00000000 0111122223333 3444455677999999999999999999999764 9
Q ss_pred CccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCc------------------------------------
Q 007106 369 NCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV------------------------------------ 412 (618)
Q Consensus 369 ~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~------------------------------------ 412 (618)
++.++|+++.+.+++.+.+.|+.|. |+|||++++||+||.=-
T Consensus 470 ~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 547 (896)
T PRK13104 470 KHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAA 547 (896)
T ss_pred CeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHc
Confidence 9999999999999999999999995 99999999999998621
Q ss_pred --cEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhH
Q 007106 413 --DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452 (618)
Q Consensus 413 --~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 452 (618)
-+||-...+.|..--.|..||+||.|.+|.+-.|++-+|.
T Consensus 548 GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 548 GGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred CCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 1677777777887788999999999999999888875543
No 96
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.95 E-value=1.2e-25 Score=246.29 Aligned_cols=311 Identities=18% Similarity=0.268 Sum_probs=226.3
Q ss_pred CCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC
Q 007106 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
-.+.|-++|++++..+.++.+++++||||+|||+++..++...+.+ +.+++++.|.++|.+|.++++...+
T Consensus 116 ~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~---------~qrviYTsPIKALsNQKyrdl~~~f 186 (1041)
T COG4581 116 YPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD---------GQRVIYTSPIKALSNQKYRDLLAKF 186 (1041)
T ss_pred CCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc---------CCceEeccchhhhhhhHHHHHHHHh
Confidence 3456999999999999999999999999999999998888877755 6679999999999999999998877
Q ss_pred CCC--cEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCC
Q 007106 198 PSL--DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275 (618)
Q Consensus 198 ~~~--~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~ 275 (618)
.++ -+.+++|+.. +..++.++|.|.+.|.+++.+....+.++..||+||+|.|.+...+..+++++-.+|.
T Consensus 187 gdv~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~ 259 (1041)
T COG4581 187 GDVADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPD 259 (1041)
T ss_pred hhhhhhccceeccee-------eCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCC
Confidence 543 2244555554 3456899999999999999888778999999999999999999999999999999999
Q ss_pred CCcEEEEEecCChHHHHH--HHHhccCCceEeeccCCcccccCCe------EEEEEeccC--------------------
Q 007106 276 NRQSMMFSATMPPWIRSL--TNKYLKNPLTVDLVGDSDQKLADGI------SLYSIATSM-------------------- 327 (618)
Q Consensus 276 ~~~~l~lSAT~~~~~~~~--~~~~l~~~~~i~~~~~~~~~~~~~~------~~~~~~~~~-------------------- 327 (618)
..++|+||||+++..+-- +...-..+..+... .....+... ..+.+....
T Consensus 260 ~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t--~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~ 337 (1041)
T COG4581 260 HVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVST--EHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSE 337 (1041)
T ss_pred CCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEee--cCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccch
Confidence 999999999998753221 11111112111111 000000000 000000000
Q ss_pred --------------------------cch-hHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHc--------------
Q 007106 328 --------------------------YEK-PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-------------- 366 (618)
Q Consensus 328 --------------------------~~k-~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-------------- 366 (618)
..+ ..++..+... +.-++++|+.+++.|+..+..+..
T Consensus 338 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~--~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~ 415 (1041)
T COG4581 338 KVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKD--NLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIR 415 (1041)
T ss_pred hccccCccccccccccccccCCcccccccchHHHhhhhhh--cCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHH
Confidence 000 1112222111 245899999999999888766532
Q ss_pred ---------------cC-------------CccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEE-
Q 007106 367 ---------------SY-------------NCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH- 417 (618)
Q Consensus 367 ---------------~~-------------~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~- 417 (618)
.+ .+.++|++|-+..|..+...|..|-++|++||.+++.|+|+|.-++|+-
T Consensus 416 ~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~ 495 (1041)
T COG4581 416 EIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTS 495 (1041)
T ss_pred HHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeee
Confidence 01 1335789999999999999999999999999999999999997666552
Q ss_pred ---cC----CCCChhHHHHhhhccCCCCC--cceEEEEec
Q 007106 418 ---YE----LPNTSETFVHRTGRTGRAGK--KGSAILIYT 448 (618)
Q Consensus 418 ---~~----~p~~~~~~~Qr~GR~gR~g~--~g~~~~~~~ 448 (618)
+| .+-++.+|+|..|||||.|. .|.++++..
T Consensus 496 l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 496 LSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred eEEecCCceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 22 12378899999999999874 566776644
No 97
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.7e-25 Score=244.08 Aligned_cols=306 Identities=21% Similarity=0.318 Sum_probs=223.5
Q ss_pred ChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC-C-
Q 007106 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-S- 199 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~-~- 199 (618)
.+....+.+.++.+++.+||.++||||||...-..+++... ....++.++-|.|.-|..+++.+.+.+. .
T Consensus 51 v~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--------~~~g~I~~tQPRRlAArsvA~RvAeel~~~~ 122 (845)
T COG1643 51 VTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--------GIAGKIGCTQPRRLAARSVAERVAEELGEKL 122 (845)
T ss_pred cHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--------ccCCeEEecCchHHHHHHHHHHHHHHhCCCc
Confidence 45666677788888889999999999999865555554432 2356899999999888888888776542 1
Q ss_pred ---CcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhh-hccCCcH-HHHHHHHHhCC
Q 007106 200 ---LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ-MLSVGFA-EDVEVILERLP 274 (618)
Q Consensus 200 ---~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~-~~~~~~~-~~~~~il~~l~ 274 (618)
+.+.+.+.+. ......|-|+|.+.|++.+..+.. ++.+++|||||+|. -++.++. -.+..++...+
T Consensus 123 G~~VGY~iRfe~~--------~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr 193 (845)
T COG1643 123 GETVGYSIRFESK--------VSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRR 193 (845)
T ss_pred CceeeEEEEeecc--------CCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcC
Confidence 2222222111 123457999999999999988766 89999999999994 3333333 23344566667
Q ss_pred CCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEecc-Ccc-hhHHHHHHHHHhc--cCCeEEEE
Q 007106 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS-MYE-KPSIIGQLITEHA--KGGKCIVF 350 (618)
Q Consensus 275 ~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~-k~~~l~~ll~~~~--~~~~~lVf 350 (618)
.+.++|+||||+.. +.+..++.+...+.+.... ..++.++.... .+. ....+...+..+. ..+.+|||
T Consensus 194 ~DLKiIimSATld~---~rfs~~f~~apvi~i~GR~-----fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvF 265 (845)
T COG1643 194 DDLKLIIMSATLDA---ERFSAYFGNAPVIEIEGRT-----YPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVF 265 (845)
T ss_pred CCceEEEEecccCH---HHHHHHcCCCCEEEecCCc-----cceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEE
Confidence 78999999999987 4556677766666543221 22333332222 222 3334444444432 36799999
Q ss_pred ecchhHHHHHHHHHHc-----cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCC-----
Q 007106 351 TQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYEL----- 420 (618)
Q Consensus 351 ~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~----- 420 (618)
.+...+++.+++.|.+ .+.+..+|+.++.+++.++++.-..++.+|++||+++|.+|.|+++.+||+-..
T Consensus 266 LpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~ 345 (845)
T COG1643 266 LPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKR 345 (845)
T ss_pred CCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccc
Confidence 9999999999999976 256788999999999999999988898889999999999999999999997433
Q ss_pred -------------CCChhHHHHhhhccCCCCCcceEEEEecchhHH
Q 007106 421 -------------PNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453 (618)
Q Consensus 421 -------------p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 453 (618)
|.+-++..||.|||||. .+|.||-+|++.+..
T Consensus 346 y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~~~ 390 (845)
T COG1643 346 YDPRTGLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEEDFL 390 (845)
T ss_pred cccccCceeeeEEEechhhhhhhccccccC-CCceEEEecCHHHHH
Confidence 33566788999999999 589999999986654
No 98
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=6.6e-25 Score=237.94 Aligned_cols=312 Identities=20% Similarity=0.212 Sum_probs=216.5
Q ss_pred ChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC--C
Q 007106 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--S 199 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~--~ 199 (618)
+++.|.-..-.+.+ .-|.++.||+|||+++.+|++...+. +..+-|++||..||.|.++++..++. +
T Consensus 82 ~~dvQlig~l~L~~--G~Iaem~TGeGKTLva~lpa~l~aL~---------G~~V~IvTpn~yLA~rd~e~~~~l~~~LG 150 (830)
T PRK12904 82 HFDVQLIGGMVLHE--GKIAEMKTGEGKTLVATLPAYLNALT---------GKGVHVVTVNDYLAKRDAEWMGPLYEFLG 150 (830)
T ss_pred CCccHHHhhHHhcC--CchhhhhcCCCcHHHHHHHHHHHHHc---------CCCEEEEecCHHHHHHHHHHHHHHHhhcC
Confidence 77777666555544 46999999999999999999754443 45688999999999999999999876 4
Q ss_pred CcEEEEEcCcchhhhhHHhhcCCCEEEEChHHH-HHHHHhcC------CCCCCccEEEEchhhhhccC------------
Q 007106 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQMLSV------------ 260 (618)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l-~~~l~~~~------~~l~~~~~vViDEaH~~~~~------------ 260 (618)
+.+.+++++.+...+...+ .++|+++||..| ++++.... ...+.+.++||||||+++=.
T Consensus 151 lsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~ 228 (830)
T PRK12904 151 LSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPA 228 (830)
T ss_pred CeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCC
Confidence 6778888887766655554 489999999999 88887654 23677999999999987511
Q ss_pred ----CcHHHHHHHHHhCCCC--------CcEEEEEec-------------------------------------------
Q 007106 261 ----GFAEDVEVILERLPQN--------RQSMMFSAT------------------------------------------- 285 (618)
Q Consensus 261 ----~~~~~~~~il~~l~~~--------~~~l~lSAT------------------------------------------- 285 (618)
.....+..+...+..+ .+.+.+|..
T Consensus 229 ~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYi 308 (830)
T PRK12904 229 EDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYI 308 (830)
T ss_pred CcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEE
Confidence 1233444444444321 122223221
Q ss_pred ------------------------------------------------------------------CChHHHHHHHHhcc
Q 007106 286 ------------------------------------------------------------------MPPWIRSLTNKYLK 299 (618)
Q Consensus 286 ------------------------------------------------------------------~~~~~~~~~~~~l~ 299 (618)
......++...|
T Consensus 309 V~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY-- 386 (830)
T PRK12904 309 VKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIY-- 386 (830)
T ss_pred EECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHh--
Confidence 111000000000
Q ss_pred CCceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHH-hccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCC
Q 007106 300 NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDI 377 (618)
Q Consensus 300 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~ 377 (618)
+...+ .++...+......+ ..+..+..+|...+...+.+ +..+.++||||++++.++.+++.|.+. +++..+|+.
T Consensus 387 ~l~vv-~IPtnkp~~r~d~~-d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak- 463 (830)
T PRK12904 387 NLDVV-VIPTNRPMIRIDHP-DLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK- 463 (830)
T ss_pred CCCEE-EcCCCCCeeeeeCC-CeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc-
Confidence 00000 00000000000000 11223334456666665544 456789999999999999999999765 999999996
Q ss_pred CHHHHHHHHHHHhcCCccEEEEccccccCCCCCCc--------------------------------------cEEEEcC
Q 007106 378 SQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV--------------------------------------DLIIHYE 419 (618)
Q Consensus 378 ~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~--------------------------------------~~VI~~~ 419 (618)
+.+|+..+..|..+...|+|||++++||+||+-- -|||...
T Consensus 464 -q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTe 542 (830)
T PRK12904 464 -NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTE 542 (830)
T ss_pred -hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecc
Confidence 7899999999999999999999999999998643 2788888
Q ss_pred CCCChhHHHHhhhccCCCCCcceEEEEecchhH
Q 007106 420 LPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452 (618)
Q Consensus 420 ~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 452 (618)
.|.|..--.|..||+||.|.+|.+-.|++-+|.
T Consensus 543 rhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 543 RHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred cCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 888888889999999999999999988876543
No 99
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.94 E-value=6.9e-25 Score=225.70 Aligned_cols=306 Identities=17% Similarity=0.279 Sum_probs=215.2
Q ss_pred ChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC----
Q 007106 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---- 197 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~---- 197 (618)
...+-.+.+..+.+++-+||.++||||||...-..+++.- .....++.+..|.|.-|..+++++..-.
T Consensus 52 I~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG--------~~~~g~I~~TQPRRVAavslA~RVAeE~~~~l 123 (674)
T KOG0922|consen 52 IYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAG--------FASSGKIACTQPRRVAAVSLAKRVAEEMGCQL 123 (674)
T ss_pred HHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcc--------cccCCcEEeecCchHHHHHHHHHHHHHhCCCc
Confidence 4566678888899999999999999999986433333321 1223459999999988877777765432
Q ss_pred -CCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHh---C
Q 007106 198 -PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER---L 273 (618)
Q Consensus 198 -~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~---l 273 (618)
..+...+-+.... .....|.+.|.++|++.+..+.+ +..+++|||||||.-.- .-+.+.-+++. .
T Consensus 124 G~~VGY~IRFed~t--------s~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl--~TDiLlGlLKki~~~ 192 (674)
T KOG0922|consen 124 GEEVGYTIRFEDST--------SKDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSL--HTDILLGLLKKILKK 192 (674)
T ss_pred CceeeeEEEecccC--------CCceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhh--HHHHHHHHHHHHHhc
Confidence 2233333333322 22357999999999998887765 88999999999995211 11222222322 2
Q ss_pred CCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccC-cchhHHHHHHHHHh--ccCCeEEEE
Q 007106 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM-YEKPSIIGQLITEH--AKGGKCIVF 350 (618)
Q Consensus 274 ~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~ll~~~--~~~~~~lVf 350 (618)
+++.++|+||||+.. +....|+.....+.+.+.. ..+++.+..... +.....+..+++-+ .+.+.+|||
T Consensus 193 R~~LklIimSATlda---~kfS~yF~~a~i~~i~GR~-----fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvF 264 (674)
T KOG0922|consen 193 RPDLKLIIMSATLDA---EKFSEYFNNAPILTIPGRT-----FPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVF 264 (674)
T ss_pred CCCceEEEEeeeecH---HHHHHHhcCCceEeecCCC-----CceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEE
Confidence 456789999999985 5566677665555443221 223333332222 22223333333322 456799999
Q ss_pred ecchhHHHHHHHHHHcc---C------CccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCC-
Q 007106 351 TQTKRDADRLAHAMAKS---Y------NCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYEL- 420 (618)
Q Consensus 351 ~~~~~~~~~l~~~L~~~---~------~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~- 420 (618)
.+..++++.+++.|.+. . -+..+|+.++.+++.+++..-..|..+|++||+++|..|.|+.+.+||+-+.
T Consensus 265 LtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~v 344 (674)
T KOG0922|consen 265 LTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFV 344 (674)
T ss_pred eCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCce
Confidence 99999999999998653 1 1357899999999999999999999999999999999999999999996432
Q ss_pred -----------------CCChhHHHHhhhccCCCCCcceEEEEecchhHHHH
Q 007106 421 -----------------PNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455 (618)
Q Consensus 421 -----------------p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~ 455 (618)
|-|-.+..||.|||||.+ +|+|+.+|+++++..+
T Consensus 345 K~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~~~ 395 (674)
T KOG0922|consen 345 KQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYDKM 395 (674)
T ss_pred EEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHhhc
Confidence 447778899999999994 8999999999877543
No 100
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=2.8e-25 Score=239.87 Aligned_cols=317 Identities=19% Similarity=0.246 Sum_probs=210.9
Q ss_pred CChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC-
Q 007106 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS- 199 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~- 199 (618)
.|++.|.-..-.+..+ -|....||+|||+++.+|++...+. +..+.|++||..||.|.++++..++..
T Consensus 80 ~~~dvQlig~l~l~~G--~iaEm~TGEGKTLvA~l~a~l~al~---------G~~v~vvT~neyLA~Rd~e~~~~~~~~L 148 (796)
T PRK12906 80 RPFDVQIIGGIVLHEG--NIAEMKTGEGKTLTATLPVYLNALT---------GKGVHVVTVNEYLSSRDATEMGELYRWL 148 (796)
T ss_pred CCchhHHHHHHHHhcC--CcccccCCCCCcHHHHHHHHHHHHc---------CCCeEEEeccHHHHHhhHHHHHHHHHhc
Confidence 3778887665555554 4999999999999999999888766 889999999999999999999988764
Q ss_pred -CcEEEEEcCcchhhhhHHhhcCCCEEEEChHHH-HHHHHhcC------CCCCCccEEEEchhhhhccC-----------
Q 007106 200 -LDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQMLSV----------- 260 (618)
Q Consensus 200 -~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l-~~~l~~~~------~~l~~~~~vViDEaH~~~~~----------- 260 (618)
+.+.++.+..+...+.. ...++|+++|...| .++|.... ...+.+.++||||+|.++=.
T Consensus 149 Gl~vg~i~~~~~~~~r~~--~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~ 226 (796)
T PRK12906 149 GLTVGLNLNSMSPDEKRA--AYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQ 226 (796)
T ss_pred CCeEEEeCCCCCHHHHHH--HhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCC
Confidence 66677766655554433 34579999999888 44454421 12456889999999987411
Q ss_pred -----CcHHHHHHHHHhCCCC-------------------CcEEEEEec----------CC-----------hHHHHHH-
Q 007106 261 -----GFAEDVEVILERLPQN-------------------RQSMMFSAT----------MP-----------PWIRSLT- 294 (618)
Q Consensus 261 -----~~~~~~~~il~~l~~~-------------------~~~l~lSAT----------~~-----------~~~~~~~- 294 (618)
.....+..+...+... .+.+.+|.. ++ ..+...+
T Consensus 227 ~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~ 306 (796)
T PRK12906 227 AEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALR 306 (796)
T ss_pred CCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHH
Confidence 0122222333322111 111222211 00 0000000
Q ss_pred HH-hcc-CC------ceEeeccCC--------------------------------------------------------
Q 007106 295 NK-YLK-NP------LTVDLVGDS-------------------------------------------------------- 310 (618)
Q Consensus 295 ~~-~l~-~~------~~i~~~~~~-------------------------------------------------------- 310 (618)
.. ++. +. -.+.+++..
T Consensus 307 A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~ 386 (796)
T PRK12906 307 ANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAK 386 (796)
T ss_pred HHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCH
Confidence 00 000 00 000000000
Q ss_pred -------------cccccCCeEEE------EEeccCcchhHHHHHHH-HHhccCCeEEEEecchhHHHHHHHHHHcc-CC
Q 007106 311 -------------DQKLADGISLY------SIATSMYEKPSIIGQLI-TEHAKGGKCIVFTQTKRDADRLAHAMAKS-YN 369 (618)
Q Consensus 311 -------------~~~~~~~~~~~------~~~~~~~~k~~~l~~ll-~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~ 369 (618)
...++.+.+.. .+..+...|...+...+ ..+..+.++||||++++.++.+++.|.+. ++
T Consensus 387 ~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~ 466 (796)
T PRK12906 387 TEEEEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIP 466 (796)
T ss_pred HHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCC
Confidence 00001111100 11222334554555544 34557889999999999999999999764 99
Q ss_pred ccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCC---Ccc-----EEEEcCCCCChhHHHHhhhccCCCCCcc
Q 007106 370 CEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP---NVD-----LIIHYELPNTSETFVHRTGRTGRAGKKG 441 (618)
Q Consensus 370 ~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~---~~~-----~VI~~~~p~~~~~~~Qr~GR~gR~g~~g 441 (618)
+..+|+++.+.++..+...++.|. |+|||++++||+||+ ++. +||+++.|.+...|.|++||+||.|.+|
T Consensus 467 ~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G 544 (796)
T PRK12906 467 HAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPG 544 (796)
T ss_pred eeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCc
Confidence 999999998888777777777776 999999999999995 788 9999999999999999999999999999
Q ss_pred eEEEEecchhH
Q 007106 442 SAILIYTDQQA 452 (618)
Q Consensus 442 ~~~~~~~~~~~ 452 (618)
.+.++++.+|.
T Consensus 545 ~s~~~~sleD~ 555 (796)
T PRK12906 545 SSRFYLSLEDD 555 (796)
T ss_pred ceEEEEeccch
Confidence 99999887653
No 101
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.94 E-value=4.1e-25 Score=228.32 Aligned_cols=318 Identities=20% Similarity=0.261 Sum_probs=223.0
Q ss_pred CChHHHHHHHHHHhC----CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007106 121 KLFPIQKAVLEPAMQ----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~----~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
.|++||.+-++++.+ +-++|+..++|.|||+.. ++++..+.... +.....||+||... ..+|.++++++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~-----~~~GPfLVi~P~St-L~NW~~Ef~rf 239 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRK-----GIPGPFLVIAPKST-LDNWMNEFKRF 239 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhc-----CCCCCeEEEeeHhh-HHHHHHHHHHh
Confidence 589999999988753 567999999999999876 44444443311 22456899999644 57799999999
Q ss_pred CCCCcEEEEEcCcchhhhh--HH-hhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhC
Q 007106 197 APSLDTICVYGGTPISHQM--RA-LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (618)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~--~~-l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l 273 (618)
+|.+++++.+|........ .. ....++|+|||+++.+..- ..+.--+|+++||||||++.+. ...+.++++.+
T Consensus 240 ~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk--~~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~f 315 (971)
T KOG0385|consen 240 TPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK--SFLKKFNWRYLVIDEAHRIKNE--KSKLSKILREF 315 (971)
T ss_pred CCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH--HHHhcCCceEEEechhhhhcch--hhHHHHHHHHh
Confidence 9999999999876433221 11 2235899999999987652 2233447899999999999875 45566777777
Q ss_pred CCCCcEEEEEecCC-hHHHHHHHHh-----------------cc-----------------------------------C
Q 007106 274 PQNRQSMMFSATMP-PWIRSLTNKY-----------------LK-----------------------------------N 300 (618)
Q Consensus 274 ~~~~~~l~lSAT~~-~~~~~~~~~~-----------------l~-----------------------------------~ 300 (618)
.... .+++|.||- +.+.+++... +. .
T Consensus 316 ~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLpp 394 (971)
T KOG0385|consen 316 KTDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPP 394 (971)
T ss_pred cccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCC
Confidence 5444 567788863 2222222110 00 0
Q ss_pred CceEee-cc---------------------CCc--------------------------ccccCCeEEEEEeccCcchhH
Q 007106 301 PLTVDL-VG---------------------DSD--------------------------QKLADGISLYSIATSMYEKPS 332 (618)
Q Consensus 301 ~~~i~~-~~---------------------~~~--------------------------~~~~~~~~~~~~~~~~~~k~~ 332 (618)
...+.+ +. ... ......+......+....|..
T Consensus 395 KkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~ 474 (971)
T KOG0385|consen 395 KKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKML 474 (971)
T ss_pred cceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCccee
Confidence 000000 00 000 000000111111122334666
Q ss_pred HHHHHHHHh-ccCCeEEEEecchhHHHHHHHHHH-ccCCccccccCCCHHHHHHHHHHHhcCC---ccEEEEccccccCC
Q 007106 333 IIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR---FNILIATDVAARGL 407 (618)
Q Consensus 333 ~l~~ll~~~-~~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~lhg~~~~~~r~~i~~~f~~g~---~~vLVaT~~~~~Gi 407 (618)
+|..++..+ ..+++||||.+.....+.|.+++. +.+...-+.|.++-++|...++.|.... .-+|++|.+.+.||
T Consensus 475 vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGI 554 (971)
T KOG0385|consen 475 VLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGI 554 (971)
T ss_pred hHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccc
Confidence 677777665 358899999999999999999884 5588889999999999999999998654 56799999999999
Q ss_pred CCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecch
Q 007106 408 DVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 408 di~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
|+..+++||.||..|+|..-+|..-||+|.|++..+.+|-.-.
T Consensus 555 NL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLit 597 (971)
T KOG0385|consen 555 NLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLIT 597 (971)
T ss_pred ccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEec
Confidence 9999999999999999999999999999999887766655433
No 102
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.94 E-value=3.6e-25 Score=246.34 Aligned_cols=321 Identities=20% Similarity=0.216 Sum_probs=216.4
Q ss_pred ChHHHHHHHHHHhCC---C-CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC
Q 007106 122 LFPIQKAVLEPAMQG---R-DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~---~-~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
.++.|..++..+.+. . .+++.+|||+|||.+++.+++..+... .....+++++.|+++++++.++.+++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-----~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-----IKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-----ccccceEEEEccHHHHHHHHHHHHHhhh
Confidence 489999999888764 4 688999999999999998888776542 1136789999999999999999999876
Q ss_pred CCCcEEEE--EcCcchhhhhHH-----h---------hcCCCEEEEChHHHHHHHHh-cCCC-C--CCccEEEEchhhhh
Q 007106 198 PSLDTICV--YGGTPISHQMRA-----L---------DYGVDAVVGTPGRVIDLIKR-NALN-L--SEVQFVVLDEADQM 257 (618)
Q Consensus 198 ~~~~~~~~--~g~~~~~~~~~~-----l---------~~~~~Ilv~T~~~l~~~l~~-~~~~-l--~~~~~vViDEaH~~ 257 (618)
....+... ++.......... . ..-..++++|+..+...... .... + -..+++|+||+|.+
T Consensus 271 ~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~ 350 (733)
T COG1203 271 GLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLY 350 (733)
T ss_pred cccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhh
Confidence 54433333 333221111111 0 01145556666555442111 1111 1 12468999999987
Q ss_pred ccCCcHHHHHHHHHhC-CCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcch--hHHH
Q 007106 258 LSVGFAEDVEVILERL-PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK--PSII 334 (618)
Q Consensus 258 ~~~~~~~~~~~il~~l-~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k--~~~l 334 (618)
.+......+..++..+ .....+|+||||+|+..++.+...+.....+.......................... ....
T Consensus 351 ~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 430 (733)
T COG1203 351 ADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELI 430 (733)
T ss_pred cccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhh
Confidence 7653344444444443 357889999999999999988888766555543211000000000000000111111 1233
Q ss_pred HHHHHHhccCCeEEEEecchhHHHHHHHHHHccCC-ccccccCCCHHHHHHHHHHHh----cCCccEEEEccccccCCCC
Q 007106 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYN-CEPLHGDISQSQRERTLSAFR----DGRFNILIATDVAARGLDV 409 (618)
Q Consensus 335 ~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~-~~~lhg~~~~~~r~~i~~~f~----~g~~~vLVaT~~~~~Gidi 409 (618)
........++.+++|+|||+..|..+++.|+.... +.++|+.+...+|.+.++.+. .+...|+|||+++|.|||+
T Consensus 431 ~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi 510 (733)
T COG1203 431 ELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI 510 (733)
T ss_pred hcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc
Confidence 44455566788999999999999999999988766 999999999999998888654 4678999999999999999
Q ss_pred CCccEEEEcCCCCChhHHHHhhhccCCCC--CcceEEEEecch
Q 007106 410 PNVDLIIHYELPNTSETFVHRTGRTGRAG--KKGSAILIYTDQ 450 (618)
Q Consensus 410 ~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g--~~g~~~~~~~~~ 450 (618)
+.++||---+ .+..++||+||++|.| ..+.++++....
T Consensus 511 -dfd~mITe~a--PidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 511 -DFDVLITELA--PIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred -ccCeeeecCC--CHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 6888886444 4667899999999998 567777776544
No 103
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.93 E-value=7.5e-25 Score=202.12 Aligned_cols=163 Identities=31% Similarity=0.539 Sum_probs=138.4
Q ss_pred hHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC--C
Q 007106 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--L 200 (618)
Q Consensus 123 ~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~--~ 200 (618)
||+|.++++.+.+++++++.+|||+|||++++++++..+.+. ...+++|++|+++|++|+++++.+++.. +
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~ 73 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-------KDARVLIIVPTRALAEQQFERLRKFFSNTNV 73 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-------SSSEEEEEESSHHHHHHHHHHHHHHTTTTTS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-------CCceEEEEeeccccccccccccccccccccc
Confidence 799999999999999999999999999999999999887652 1348999999999999999999998864 6
Q ss_pred cEEEEEcCcchh-hhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCC--CCC
Q 007106 201 DTICVYGGTPIS-HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP--QNR 277 (618)
Q Consensus 201 ~~~~~~g~~~~~-~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~--~~~ 277 (618)
++..++++.... .....+...++|+|+||++|.+.+......+.++++||+||+|.+..+.+...+..++..+. .+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~ 153 (169)
T PF00270_consen 74 RVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNI 153 (169)
T ss_dssp SEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTS
T ss_pred ccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCC
Confidence 778888877654 44444556799999999999999988666777899999999999998878888999988874 368
Q ss_pred cEEEEEecCChHHHH
Q 007106 278 QSMMFSATMPPWIRS 292 (618)
Q Consensus 278 ~~l~lSAT~~~~~~~ 292 (618)
++++||||+++.+++
T Consensus 154 ~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 154 QIILLSATLPSNVEK 168 (169)
T ss_dssp EEEEEESSSTHHHHH
T ss_pred cEEEEeeCCChhHhh
Confidence 999999999966654
No 104
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.93 E-value=2.6e-24 Score=228.62 Aligned_cols=351 Identities=23% Similarity=0.325 Sum_probs=237.4
Q ss_pred CCHHHHHHH-HHcCCCCChHHHHHHH--HHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc
Q 007106 106 ISQDIVAAL-ARRGISKLFPIQKAVL--EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (618)
Q Consensus 106 l~~~l~~~l-~~~~~~~l~~~Q~~~i--~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt 182 (618)
+++.+.+.. +.+++..++.||.+++ +.++.+++.|...||+.|||+++-+.++..++.. ...++++.|.
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~--------rr~~llilp~ 278 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR--------RRNVLLILPY 278 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH--------hhceeEecce
Confidence 344444443 5678999999999997 5788889999999999999999999998877652 3468999999
Q ss_pred HHHHHHHHHHHHHhCCCC--cEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHh--cCCCCCCccEEEEchhhhhc
Q 007106 183 RELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR--NALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 183 ~~La~q~~~~l~~~~~~~--~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~--~~~~l~~~~~vViDEaH~~~ 258 (618)
.+.+......+..+..++ .+....|..+..... +.-++.|||.++-..++.. ..-.+..+++||+||.|.+.
T Consensus 279 vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~ 354 (1008)
T KOG0950|consen 279 VSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIG 354 (1008)
T ss_pred eehhHHHHhhhhhhccccCCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeee
Confidence 888888777777665433 333444444433322 2348999999997655433 11235678999999999999
Q ss_pred cCCcHHHHHHHHHhC-----CCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCc--ccccCCeEEEEE--------
Q 007106 259 SVGFAEDVEVILERL-----PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSD--QKLADGISLYSI-------- 323 (618)
Q Consensus 259 ~~~~~~~~~~il~~l-----~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~--~~~~~~~~~~~~-------- 323 (618)
+.+.+..++.++.++ ....|+|.||||+++. .++..++......+.....+ +.+......+..
T Consensus 355 d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ 432 (1008)
T KOG0950|consen 355 DKGRGAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLRE 432 (1008)
T ss_pred ccccchHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHH
Confidence 988888888877664 2346799999999873 44444443221111000000 000000000000
Q ss_pred ------eccCcchhHHHHHHHHHh-ccCCeEEEEecchhHHHHHHHHHHc------------------------------
Q 007106 324 ------ATSMYEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAK------------------------------ 366 (618)
Q Consensus 324 ------~~~~~~k~~~l~~ll~~~-~~~~~~lVf~~~~~~~~~l~~~L~~------------------------------ 366 (618)
.....+..+.+..+..+. .++.++||||++++.|+.++..+.+
T Consensus 433 ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ 512 (1008)
T KOG0950|consen 433 IANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGI 512 (1008)
T ss_pred hhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcc
Confidence 000000111222222222 3355699999999999888755432
Q ss_pred ---------cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCC----CCChhHHHHhhhc
Q 007106 367 ---------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYEL----PNTSETFVHRTGR 433 (618)
Q Consensus 367 ---------~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~----p~~~~~~~Qr~GR 433 (618)
.+.++.+|.+++.++|+.+...|++|...|++||+++..|+++|..+++|-.-+ ..+..+|.|++||
T Consensus 513 ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GR 592 (1008)
T KOG0950|consen 513 LDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGR 592 (1008)
T ss_pred cchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhh
Confidence 124677899999999999999999999999999999999999998887775322 2377889999999
Q ss_pred cCCCC--CcceEEEEecchhHHHHHHHHHHhCCCcccCCccc
Q 007106 434 TGRAG--KKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIA 473 (618)
Q Consensus 434 ~gR~g--~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 473 (618)
|||+| ..|.+++++...+...+.. .+....+.+...+
T Consensus 593 AGR~gidT~GdsiLI~k~~e~~~~~~---lv~~~~~~~~S~l 631 (1008)
T KOG0950|consen 593 AGRTGIDTLGDSILIIKSSEKKRVRE---LVNSPLKPLNSCL 631 (1008)
T ss_pred hhhcccccCcceEEEeeccchhHHHH---HHhcccccccccc
Confidence 99986 6788999999988776653 3444455444433
No 105
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=9.9e-24 Score=228.34 Aligned_cols=145 Identities=21% Similarity=0.333 Sum_probs=122.4
Q ss_pred CCCCCHHHHHHHH-----HcCCCCC---hHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007106 103 KLDISQDIVAALA-----RRGISKL---FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (618)
Q Consensus 103 ~~~l~~~l~~~l~-----~~~~~~l---~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~ 174 (618)
.+.+..++.+.+. ..++..| +|+|.++++.+..++++|++++||+|||++|++|++..++. +.
T Consensus 66 afal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~---------g~ 136 (970)
T PRK12899 66 AYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT---------GK 136 (970)
T ss_pred HhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh---------cC
Confidence 5667777777776 4677776 99999999999999999999999999999999999987754 23
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHH-HHHHHhcCCCCC-------
Q 007106 175 LCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNALNLS------- 244 (618)
Q Consensus 175 ~~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l-~~~l~~~~~~l~------- 244 (618)
.++||+||++||.|.++++..++. ++++.+++++.+...+...+ .++|+|+||.+| +++++...+.++
T Consensus 137 ~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr 214 (970)
T PRK12899 137 PVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGR 214 (970)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcc
Confidence 489999999999999999988764 46788888998877776554 589999999999 999988755554
Q ss_pred CccEEEEchhhhhc
Q 007106 245 EVQFVVLDEADQML 258 (618)
Q Consensus 245 ~~~~vViDEaH~~~ 258 (618)
.+.++||||||.|+
T Consensus 215 ~~~~~IIDEADsmL 228 (970)
T PRK12899 215 GFYFAIIDEVDSIL 228 (970)
T ss_pred cccEEEEechhhhh
Confidence 45899999999885
No 106
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.93 E-value=2.1e-24 Score=234.19 Aligned_cols=331 Identities=19% Similarity=0.237 Sum_probs=231.2
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHH
Q 007106 108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (618)
Q Consensus 108 ~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (618)
+...+.+....-...+.++++.++.+.+++.++|.++||||||.....-+++...... ..+++++..|.|.-|.
T Consensus 160 ~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~------~~~~IicTQPRRIsAI 233 (924)
T KOG0920|consen 160 ESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG------AACNIICTQPRRISAI 233 (924)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC------CCCeEEecCCchHHHH
Confidence 3344444333334467889999999999999999999999999988877887765532 4678999999999999
Q ss_pred HHHHHHHHh-CCCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhh-hccCCcHHH
Q 007106 188 QVEKEFHES-APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ-MLSVGFAED 265 (618)
Q Consensus 188 q~~~~l~~~-~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~-~~~~~~~~~ 265 (618)
.+++++.+- .+.+...+-+ ...-+. .......+++||.+.|++.+.... .+..+..||+||+|. -.+.+|.-.
T Consensus 234 svAeRVa~ER~~~~g~~VGY---qvrl~~-~~s~~t~L~fcTtGvLLr~L~~~~-~l~~vthiivDEVHER~i~~DflLi 308 (924)
T KOG0920|consen 234 SVAERVAKERGESLGEEVGY---QVRLES-KRSRETRLLFCTTGVLLRRLQSDP-TLSGVTHIIVDEVHERSINTDFLLI 308 (924)
T ss_pred HHHHHHHHHhccccCCeeeE---EEeeec-ccCCceeEEEecHHHHHHHhccCc-ccccCceeeeeeEEEccCCcccHHH
Confidence 998887653 2222211100 000000 111226899999999999998744 488999999999994 345556666
Q ss_pred HHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCccc-----------ccC---CeEEE----------
Q 007106 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQK-----------LAD---GISLY---------- 321 (618)
Q Consensus 266 ~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~-----------~~~---~~~~~---------- 321 (618)
+.+.+-..+++.++|+||||+.. +....|+.....+.+....... +.. ....+
T Consensus 309 ~lk~lL~~~p~LkvILMSAT~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~ 385 (924)
T KOG0920|consen 309 LLKDLLPRNPDLKVILMSATLDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRL 385 (924)
T ss_pred HHHHHhhhCCCceEEEeeeecch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCcccc
Confidence 66666666789999999999984 4455555554444332211000 000 00000
Q ss_pred --EEeccCcchhHHHHHHHHHh---ccCCeEEEEecchhHHHHHHHHHHc--------cCCccccccCCCHHHHHHHHHH
Q 007106 322 --SIATSMYEKPSIIGQLITEH---AKGGKCIVFTQTKRDADRLAHAMAK--------SYNCEPLHGDISQSQRERTLSA 388 (618)
Q Consensus 322 --~~~~~~~~k~~~l~~ll~~~---~~~~~~lVf~~~~~~~~~l~~~L~~--------~~~~~~lhg~~~~~~r~~i~~~ 388 (618)
......+....++.+++... ...+.+|||.+...++..+++.|.. ++-+..+|+.|+..+++.+...
T Consensus 386 ~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~ 465 (924)
T KOG0920|consen 386 ARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKR 465 (924)
T ss_pred ccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCC
Confidence 00001112334444444433 3367999999999999999999853 2446788999999999999999
Q ss_pred HhcCCccEEEEccccccCCCCCCccEEEE--------cCCCC----------ChhHHHHhhhccCCCCCcceEEEEecch
Q 007106 389 FRDGRFNILIATDVAARGLDVPNVDLIIH--------YELPN----------TSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 389 f~~g~~~vLVaT~~~~~Gidi~~~~~VI~--------~~~p~----------~~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
...|..+||+||+++|.+|.|+++.+||+ ||+.. +-.+-.||+|||||. ++|.||.+|+..
T Consensus 466 pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 466 PPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRS 544 (924)
T ss_pred CCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechh
Confidence 99999999999999999999999999996 44433 334567999999999 799999999876
Q ss_pred hHH
Q 007106 451 QAR 453 (618)
Q Consensus 451 ~~~ 453 (618)
.+.
T Consensus 545 ~~~ 547 (924)
T KOG0920|consen 545 RYE 547 (924)
T ss_pred hhh
Confidence 443
No 107
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1.3e-24 Score=220.98 Aligned_cols=310 Identities=16% Similarity=0.239 Sum_probs=218.6
Q ss_pred cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007106 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
+.....+++-.+.+.++...+.+||.++||||||......+...=+. ..+.++-+..|.+.-|..++.++.+-
T Consensus 261 RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGyt-------k~gk~IgcTQPRRVAAmSVAaRVA~E 333 (902)
T KOG0923|consen 261 RKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYT-------KGGKKIGCTQPRRVAAMSVAARVAEE 333 (902)
T ss_pred HhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccc-------cCCceEeecCcchHHHHHHHHHHHHH
Confidence 34455678888999999999999999999999998643333322111 12445888999999999888777542
Q ss_pred -CCCC----cEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhh-hccCCcHHHHHHHH
Q 007106 197 -APSL----DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ-MLSVGFAEDVEVIL 270 (618)
Q Consensus 197 -~~~~----~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~-~~~~~~~~~~~~il 270 (618)
...+ ...+-+-+. .....-|-++|.++|++.+.... .|..+++|||||||. .+..+..--+-+.+
T Consensus 334 MgvkLG~eVGYsIRFEdc--------TSekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAHERTL~TDILfgLvKDI 404 (902)
T KOG0923|consen 334 MGVKLGHEVGYSIRFEDC--------TSEKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAHERTLHTDILFGLVKDI 404 (902)
T ss_pred hCcccccccceEEEeccc--------cCcceeeeeecchhHHHHHhccc-cccceeEEEeehhhhhhhhhhHHHHHHHHH
Confidence 2122 222222111 12234678999999998877654 488999999999994 33333333344455
Q ss_pred HhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCc-chhHHHHHHHHHh--ccCCeE
Q 007106 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY-EKPSIIGQLITEH--AKGGKC 347 (618)
Q Consensus 271 ~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~l~~ll~~~--~~~~~~ 347 (618)
.+.+++.++|++|||+.. +....|+.+...+.+-+.. ..+..++...... .....+..+++-+ .+.+.+
T Consensus 405 ar~RpdLKllIsSAT~DA---ekFS~fFDdapIF~iPGRR-----yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDI 476 (902)
T KOG0923|consen 405 ARFRPDLKLLISSATMDA---EKFSAFFDDAPIFRIPGRR-----YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDI 476 (902)
T ss_pred HhhCCcceEEeeccccCH---HHHHHhccCCcEEeccCcc-----cceeeecccCCchhHHHHHHhhheeeEeccCCccE
Confidence 667789999999999986 4556677666665542211 2233333333332 2233333333322 346799
Q ss_pred EEEecchhHHHHHHHHHHc----------cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEE
Q 007106 348 IVFTQTKRDADRLAHAMAK----------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH 417 (618)
Q Consensus 348 lVf~~~~~~~~~l~~~L~~----------~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~ 417 (618)
|||....++++...+.|.+ .+-+..+|+.++++.+..|++.-..|..+|++||++++..|.|+++.+||+
T Consensus 477 LVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViD 556 (902)
T KOG0923|consen 477 LVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVID 556 (902)
T ss_pred EEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEec
Confidence 9999999999888887754 234778999999999999999999999999999999999999999999996
Q ss_pred cCC------------------CCChhHHHHhhhccCCCCCcceEEEEecchh
Q 007106 418 YEL------------------PNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451 (618)
Q Consensus 418 ~~~------------------p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 451 (618)
-+. |.+-....||.|||||.| +|+|+.+|+.-.
T Consensus 557 pGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~a 607 (902)
T KOG0923|consen 557 PGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWA 607 (902)
T ss_pred CccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhh
Confidence 432 345566789999999996 899999998543
No 108
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.92 E-value=2.5e-23 Score=217.71 Aligned_cols=326 Identities=17% Similarity=0.254 Sum_probs=199.0
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHH
Q 007106 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (618)
Q Consensus 110 l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~ 189 (618)
+...++...-...-.+-.+.+..+..+..++|.++||+|||..+..-+|+.++... .+....+++..|++..+..+
T Consensus 367 ~~~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns----~g~~~na~v~qprrisaisi 442 (1282)
T KOG0921|consen 367 LDKITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENS----NGASFNAVVSQPRRISAISL 442 (1282)
T ss_pred hhhhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcc----ccccccceeccccccchHHH
Confidence 33344433333344555666777777778999999999999999888888877622 22334578888999888888
Q ss_pred HHHHHHh-CCCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhcc-CCcHHHHH
Q 007106 190 EKEFHES-APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS-VGFAEDVE 267 (618)
Q Consensus 190 ~~~l~~~-~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~-~~~~~~~~ 267 (618)
++++..- ...+.-.+.+ +.......-..--.|++||.+-+++.+.+. +..+.++|+||+|...- ..|...+.
T Consensus 443 aerva~er~e~~g~tvgy---~vRf~Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~l 516 (1282)
T KOG0921|consen 443 AERVANERGEEVGETCGY---NVRFDSATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVL 516 (1282)
T ss_pred HHHHHHhhHHhhcccccc---cccccccccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHH
Confidence 8776532 1111111111 111000001111369999999999988764 56788999999996432 22333333
Q ss_pred HHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEee---------------------------------ccCCcccc
Q 007106 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL---------------------------------VGDSDQKL 314 (618)
Q Consensus 268 ~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~---------------------------------~~~~~~~~ 314 (618)
.-+.-.....++++||||+..+.. ..++.+...+.+ ..+.....
T Consensus 517 r~m~~ty~dl~v~lmsatIdTd~f---~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~ 593 (1282)
T KOG0921|consen 517 REMISTYRDLRVVLMSATIDTDLF---TNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEE 593 (1282)
T ss_pred Hhhhccchhhhhhhhhcccchhhh---hhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCch
Confidence 333334456677777887754211 111111110000 00000000
Q ss_pred cC-CeEEEEEeccCc----------------chhHHHHHHHHHh---ccCCeEEEEecchhHHHHHHHHHHc--------
Q 007106 315 AD-GISLYSIATSMY----------------EKPSIIGQLITEH---AKGGKCIVFTQTKRDADRLAHAMAK-------- 366 (618)
Q Consensus 315 ~~-~~~~~~~~~~~~----------------~k~~~l~~ll~~~---~~~~~~lVf~~~~~~~~~l~~~L~~-------- 366 (618)
.+ .-..+...+++. ....++..++..+ .-.+.++||.+-...+..|..+|..
T Consensus 594 ~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~ 673 (1282)
T KOG0921|consen 594 VDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQAN 673 (1282)
T ss_pred hhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccch
Confidence 00 000000000000 0111222222222 2256899999999999999887743
Q ss_pred cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCC------------------CChhHHH
Q 007106 367 SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELP------------------NTSETFV 428 (618)
Q Consensus 367 ~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p------------------~~~~~~~ 428 (618)
.+++..+|+..+..++.++.+....+..++|++|.+++..+.+.++.+||+.+.- .+....+
T Consensus 674 ~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~e 753 (1282)
T KOG0921|consen 674 KYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLE 753 (1282)
T ss_pred hcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchH
Confidence 3678889999999999999999999999999999999999999888888864421 1445678
Q ss_pred HhhhccCCCCCcceEEEEecc
Q 007106 429 HRTGRTGRAGKKGSAILIYTD 449 (618)
Q Consensus 429 Qr~GR~gR~g~~g~~~~~~~~ 449 (618)
||.||++|. ++|.|+.++..
T Consensus 754 qr~gr~grv-R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 754 QRKGRAGRV-RPGFCFHLCSR 773 (1282)
T ss_pred hhcccCcee-cccccccccHH
Confidence 999999998 68888888743
No 109
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=8.9e-23 Score=212.30 Aligned_cols=316 Identities=19% Similarity=0.273 Sum_probs=218.4
Q ss_pred CCChHHHHHHHHHHhC----CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007106 120 SKLFPIQKAVLEPAMQ----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~----~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
..|.+||++.+.++.+ +...||-.++|.|||+..+ +.|..+.... + -...+|||||. .+..||..++..
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQii-sFLaaL~~S~-k----~~~paLIVCP~-Tii~qW~~E~~~ 276 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQII-SFLAALHHSG-K----LTKPALIVCPA-TIIHQWMKEFQT 276 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHH-HHHHHHhhcc-c----ccCceEEEccH-HHHHHHHHHHHH
Confidence 3578999999988753 4568999999999997653 3333333211 1 12579999995 888999999999
Q ss_pred hCCCCcEEEEEcCcchh--------hhhHH-----hhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCc
Q 007106 196 SAPSLDTICVYGGTPIS--------HQMRA-----LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF 262 (618)
Q Consensus 196 ~~~~~~~~~~~g~~~~~--------~~~~~-----l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~ 262 (618)
|+|..++.++|+..... ..... ......|+++|++.+.- ..+.+.-..|+++|+||.|++-+.
T Consensus 277 w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d~l~~~~W~y~ILDEGH~IrNp-- 352 (923)
T KOG0387|consen 277 WWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGDDLLGILWDYVILDEGHRIRNP-- 352 (923)
T ss_pred hCcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCcccccccccEEEecCcccccCC--
Confidence 99999999998776521 11111 11246799999988742 223344557999999999999875
Q ss_pred HHHHHHHHHhCCCCCcEEEEEecCC-hHHHHHHHHh-----------------ccCC-----------------------
Q 007106 263 AEDVEVILERLPQNRQSMMFSATMP-PWIRSLTNKY-----------------LKNP----------------------- 301 (618)
Q Consensus 263 ~~~~~~il~~l~~~~~~l~lSAT~~-~~~~~~~~~~-----------------l~~~----------------------- 301 (618)
..++...+..++ ..+.|.||.||. +.+.+++..| +..|
T Consensus 353 ns~islackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~ 431 (923)
T KOG0387|consen 353 NSKISLACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVA 431 (923)
T ss_pred ccHHHHHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHH
Confidence 345555555664 456677788863 2222222211 0000
Q ss_pred --------------------------ceEeec-----------------------cCC---------cccccCCeEEE--
Q 007106 302 --------------------------LTVDLV-----------------------GDS---------DQKLADGISLY-- 321 (618)
Q Consensus 302 --------------------------~~i~~~-----------------------~~~---------~~~~~~~~~~~-- 321 (618)
..+-.+ ... ...+..+...+
T Consensus 432 Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~ 511 (923)
T KOG0387|consen 432 LRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDR 511 (923)
T ss_pred HHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccC
Confidence 000000 000 00000000000
Q ss_pred -----------EEeccCcchhHHHHHHHHHh-ccCCeEEEEecchhHHHHHHHHHH--ccCCccccccCCCHHHHHHHHH
Q 007106 322 -----------SIATSMYEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMA--KSYNCEPLHGDISQSQRERTLS 387 (618)
Q Consensus 322 -----------~~~~~~~~k~~~l~~ll~~~-~~~~~~lVf~~~~~~~~~l~~~L~--~~~~~~~lhg~~~~~~r~~i~~ 387 (618)
.-.....-|...+..++..- ..+.++|+|..++...+.|...|. +.+.+.-+.|..+...|..+++
T Consensus 512 ~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd 591 (923)
T KOG0387|consen 512 RDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVD 591 (923)
T ss_pred cccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHH
Confidence 01112223566666666654 357899999999999999999997 3689999999999999999999
Q ss_pred HHhcCC--ccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEe
Q 007106 388 AFRDGR--FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447 (618)
Q Consensus 388 ~f~~g~--~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~ 447 (618)
.|+++. ..+|++|.+.+-|+|+..++-||+||+.|||..-.|..-||-|.|++..++++-
T Consensus 592 ~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYR 653 (923)
T KOG0387|consen 592 RFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYR 653 (923)
T ss_pred hhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEE
Confidence 999876 345888999999999999999999999999999999999999999987777664
No 110
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.91 E-value=4.2e-23 Score=223.48 Aligned_cols=318 Identities=19% Similarity=0.272 Sum_probs=220.7
Q ss_pred CCChHHHHHHHHHHh----CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007106 120 SKLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~----~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
.+|+.||-+-+++++ .++++|+..++|.|||+.- +..|..+...... ....|||+|. +-+..|.+++..
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqt-i~fl~~l~~~~~~-----~gpflvvvpl-st~~~W~~ef~~ 441 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQT-ITFLSYLFHSLQI-----HGPFLVVVPL-STITAWEREFET 441 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHH-HHHHHHHHHhhhc-----cCCeEEEeeh-hhhHHHHHHHHH
Confidence 579999999988765 5689999999999999754 3444444432211 3458999997 556779999999
Q ss_pred hCCCCcEEEEEcCcchhhhhHHhh----c-----CCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHH
Q 007106 196 SAPSLDTICVYGGTPISHQMRALD----Y-----GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDV 266 (618)
Q Consensus 196 ~~~~~~~~~~~g~~~~~~~~~~l~----~-----~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~ 266 (618)
|. .+++++.+|.....+.++... . .++++++|++.++..... +.--++.+++|||||++.+. ...+
T Consensus 442 w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~--L~~i~w~~~~vDeahrLkN~--~~~l 516 (1373)
T KOG0384|consen 442 WT-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE--LSKIPWRYLLVDEAHRLKND--ESKL 516 (1373)
T ss_pred Hh-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhh--hccCCcceeeecHHhhcCch--HHHH
Confidence 98 899999998877666555433 1 489999999999764432 33346789999999999764 4555
Q ss_pred HHHHHhCCCCCcEEEEEecC-ChHHHHHHHHh--cc-----------------------------CCceE-eeccCCccc
Q 007106 267 EVILERLPQNRQSMMFSATM-PPWIRSLTNKY--LK-----------------------------NPLTV-DLVGDSDQK 313 (618)
Q Consensus 267 ~~il~~l~~~~~~l~lSAT~-~~~~~~~~~~~--l~-----------------------------~~~~i-~~~~~~~~~ 313 (618)
...+..+..+ +.|++|.|| .+.+.+++... +. .|... .+..+.+..
T Consensus 517 ~~~l~~f~~~-~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdveks 595 (1373)
T KOG0384|consen 517 YESLNQFKMN-HRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKS 595 (1373)
T ss_pred HHHHHHhccc-ceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccC
Confidence 5556666544 456667775 44444444221 10 00000 000000000
Q ss_pred ccCCeEEEEEe---------------------------------------------------------------------
Q 007106 314 LADGISLYSIA--------------------------------------------------------------------- 324 (618)
Q Consensus 314 ~~~~~~~~~~~--------------------------------------------------------------------- 324 (618)
+....+.+..+
T Consensus 596 lp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L 675 (1373)
T KOG0384|consen 596 LPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEAL 675 (1373)
T ss_pred CCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHH
Confidence 11000000000
Q ss_pred ---ccCcchhHHHHHHHHHhcc-CCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhc---CCccE
Q 007106 325 ---TSMYEKPSIIGQLITEHAK-GGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRD---GRFNI 396 (618)
Q Consensus 325 ---~~~~~k~~~l~~ll~~~~~-~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~---g~~~v 396 (618)
....-|..+|..+|..+.. +++||||.+.+...+.|+++|.. .++..-|.|.+..+.|+.+++.|.+ ..+.+
T Consensus 676 ~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvF 755 (1373)
T KOG0384|consen 676 QALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVF 755 (1373)
T ss_pred HHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEE
Confidence 0000122233344444433 68999999999999999999964 5999999999999999999999986 45789
Q ss_pred EEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcce--EEEEecch
Q 007106 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGS--AILIYTDQ 450 (618)
Q Consensus 397 LVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~--~~~~~~~~ 450 (618)
|+||.+.+.|||+..+++||+||..|||..-+|..-||+|.|++.. +|.|++..
T Consensus 756 LLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 756 LLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred EEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 9999999999999999999999999999999999999999998765 45555544
No 111
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=1.5e-22 Score=219.13 Aligned_cols=316 Identities=21% Similarity=0.265 Sum_probs=207.8
Q ss_pred ChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC--C
Q 007106 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--S 199 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~--~ 199 (618)
+++.|. +-.+.-.+.-|.+++||.|||+++.+|++..++. +..+.||+|+..||.+.++++..++. +
T Consensus 83 ~ydVQl--iGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~---------g~~VhIvT~ndyLA~RD~e~m~~l~~~lG 151 (908)
T PRK13107 83 HFDVQL--LGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALT---------GKGVHVITVNDYLARRDAENNRPLFEFLG 151 (908)
T ss_pred cCchHH--hcchHhcCCccccccCCCCchHHHHHHHHHHHhc---------CCCEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 455554 3333334567999999999999999999877654 55699999999999999999988764 4
Q ss_pred CcEEEEEcCcchhhhhHHhhcCCCEEEEChHHH-HHHHHhc-CCCC-----CCccEEEEchhhhhccCC-----------
Q 007106 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN-ALNL-----SEVQFVVLDEADQMLSVG----------- 261 (618)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l-~~~l~~~-~~~l-----~~~~~vViDEaH~~~~~~----------- 261 (618)
+.+.++.++.+... +.....++|+++|+..| +++|... .+.. +.+.++||||+|.++-..
T Consensus 152 lsv~~i~~~~~~~~--r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~ 229 (908)
T PRK13107 152 LTVGINVAGLGQQE--KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAA 229 (908)
T ss_pred CeEEEecCCCCHHH--HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCC
Confidence 66777777666432 22334689999999999 8887765 3332 678999999999875321
Q ss_pred -----cHHHHHHHHHhCC-------------------CCCcEEEEEecCChHHHHHH-----------------------
Q 007106 262 -----FAEDVEVILERLP-------------------QNRQSMMFSATMPPWIRSLT----------------------- 294 (618)
Q Consensus 262 -----~~~~~~~il~~l~-------------------~~~~~l~lSAT~~~~~~~~~----------------------- 294 (618)
....+..++..+. ...+.+.+|-.=...+..++
T Consensus 230 ~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~ 309 (908)
T PRK13107 230 EDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHH 309 (908)
T ss_pred ccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHH
Confidence 1222222222221 11122322211000011100
Q ss_pred -----H--Hhcc-CC------ceEeeccCCccc-----------------------------------------------
Q 007106 295 -----N--KYLK-NP------LTVDLVGDSDQK----------------------------------------------- 313 (618)
Q Consensus 295 -----~--~~l~-~~------~~i~~~~~~~~~----------------------------------------------- 313 (618)
. .++. +. -.+.+++...-.
T Consensus 310 i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~G 389 (908)
T PRK13107 310 VNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAG 389 (908)
T ss_pred HHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhc
Confidence 0 0000 00 001111100000
Q ss_pred ----------------------ccCCeEE------EEEeccCcchhH-HHHHHHHHhccCCeEEEEecchhHHHHHHHHH
Q 007106 314 ----------------------LADGISL------YSIATSMYEKPS-IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM 364 (618)
Q Consensus 314 ----------------------~~~~~~~------~~~~~~~~~k~~-~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L 364 (618)
++.+.+. ..+.....+|.. ++.++.+.+..+.++||||.+++.++.++..|
T Consensus 390 MTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L 469 (908)
T PRK13107 390 MTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLM 469 (908)
T ss_pred ccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHH
Confidence 0000000 001112222333 33444445567999999999999999999999
Q ss_pred Hcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCc-------------------------------
Q 007106 365 AKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV------------------------------- 412 (618)
Q Consensus 365 ~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~------------------------------- 412 (618)
.+. +++..+|+++.+.+++.+.+.|+.|. |+|||++++||+||.=-
T Consensus 470 ~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (908)
T PRK13107 470 VKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDE 547 (908)
T ss_pred HHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHH
Confidence 764 89999999999999999999999999 99999999999998621
Q ss_pred ------cEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhH
Q 007106 413 ------DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452 (618)
Q Consensus 413 ------~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 452 (618)
-+||-...+.|..--.|..||+||.|.+|.+..|++-+|.
T Consensus 548 V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 548 VVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 2788888888888889999999999999999988876554
No 112
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=8.4e-23 Score=208.33 Aligned_cols=308 Identities=17% Similarity=0.255 Sum_probs=208.6
Q ss_pred CCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC
Q 007106 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
.+......+.+.+..|..++.+||.++||||||......++.. .-..+..+-+..|.+.-|..++.++.+-.
T Consensus 353 q~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~ed--------GY~~~GmIGcTQPRRvAAiSVAkrVa~EM 424 (1042)
T KOG0924|consen 353 QYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYED--------GYADNGMIGCTQPRRVAAISVAKRVAEEM 424 (1042)
T ss_pred hhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhc--------ccccCCeeeecCchHHHHHHHHHHHHHHh
Confidence 3344556777788888888889999999999998643333322 12335578888899999999988876532
Q ss_pred -C----CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhh-hccCCcHHHHHHHHH
Q 007106 198 -P----SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ-MLSVGFAEDVEVILE 271 (618)
Q Consensus 198 -~----~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~-~~~~~~~~~~~~il~ 271 (618)
. .+...+-+.... .....|-+.|.+.|++....+.. |..+++||+||||. -++.+..--+.+.+-
T Consensus 425 ~~~lG~~VGYsIRFEdvT--------~~~T~IkymTDGiLLrEsL~d~~-L~kYSviImDEAHERslNtDilfGllk~~l 495 (1042)
T KOG0924|consen 425 GVTLGDTVGYSIRFEDVT--------SEDTKIKYMTDGILLRESLKDRD-LDKYSVIIMDEAHERSLNTDILFGLLKKVL 495 (1042)
T ss_pred CCccccccceEEEeeecC--------CCceeEEEeccchHHHHHhhhhh-hhheeEEEechhhhcccchHHHHHHHHHHH
Confidence 1 222222222221 12346889999999876655443 78899999999995 333322222222222
Q ss_pred hCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCc-chhHHHHHHHHHh--ccCCeEE
Q 007106 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY-EKPSIIGQLITEH--AKGGKCI 348 (618)
Q Consensus 272 ~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~l~~ll~~~--~~~~~~l 348 (618)
.-+.+.++|++|||+.. ..+..|+.+...+.+.+.. ..++..+.....+ .....+.+.+.-+ ...+.+|
T Consensus 496 arRrdlKliVtSATm~a---~kf~nfFgn~p~f~IpGRT-----yPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~Gdil 567 (1042)
T KOG0924|consen 496 ARRRDLKLIVTSATMDA---QKFSNFFGNCPQFTIPGRT-----YPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDIL 567 (1042)
T ss_pred HhhccceEEEeeccccH---HHHHHHhCCCceeeecCCc-----cceEEEeccCchHHHHHHHHhhheEeeccCCCCCEE
Confidence 23458899999999986 4455666666555553222 1122222222221 1122222332222 2357899
Q ss_pred EEecchhHHHHHHHHHHc-----------cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEE
Q 007106 349 VFTQTKRDADRLAHAMAK-----------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH 417 (618)
Q Consensus 349 Vf~~~~~~~~~l~~~L~~-----------~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~ 417 (618)
||.+..+.++..+..+.. .+.+..+++.++++.+.+++..-..+..++||||++++..|.||.+.+||+
T Consensus 568 IfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID 647 (1042)
T KOG0924|consen 568 IFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVID 647 (1042)
T ss_pred EecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEe
Confidence 999998887766665533 356788999999999999999999999999999999999999999999997
Q ss_pred cCC------------------CCChhHHHHhhhccCCCCCcceEEEEecchh
Q 007106 418 YEL------------------PNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451 (618)
Q Consensus 418 ~~~------------------p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 451 (618)
..+ |.+-++.-||.|||||.+ +|.||.+|+...
T Consensus 648 ~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~a 698 (1042)
T KOG0924|consen 648 TGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTEDA 698 (1042)
T ss_pred cCceeeeecccccccceeEEEechhccchhhccccCCCC-CcceeeehhhhH
Confidence 443 456667789999999995 899999999753
No 113
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=2.6e-22 Score=197.82 Aligned_cols=327 Identities=17% Similarity=0.247 Sum_probs=220.8
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEE
Q 007106 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (618)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~l 177 (618)
...|...+.++...+.|+++.-...+.++.+-+..+.+++-+++.++||||||...-...+...... ...+.
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~--------~~~v~ 95 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH--------LTGVA 95 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh--------cccee
Confidence 3467788999999999988877777888888888889999999999999999987666666554432 24588
Q ss_pred EEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhh
Q 007106 178 VLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (618)
Q Consensus 178 il~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~ 257 (618)
+..|.+.-|.+++.++.+-.. +...--.| .++..+ .......-+-+||.++|++....+.+ +..+++||+||||.-
T Consensus 96 CTQprrvaamsva~RVadEMD-v~lG~EVG-ysIrfE-dC~~~~T~Lky~tDgmLlrEams~p~-l~~y~viiLDeahER 171 (699)
T KOG0925|consen 96 CTQPRRVAAMSVAQRVADEMD-VTLGEEVG-YSIRFE-DCTSPNTLLKYCTDGMLLREAMSDPL-LGRYGVIILDEAHER 171 (699)
T ss_pred ecCchHHHHHHHHHHHHHHhc-cccchhcc-cccccc-ccCChhHHHHHhcchHHHHHHhhCcc-cccccEEEechhhhh
Confidence 888999999888877765321 11100000 010000 00000111336888888877766655 789999999999952
Q ss_pred -ccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcch-hHHHH
Q 007106 258 -LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIG 335 (618)
Q Consensus 258 -~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k-~~~l~ 335 (618)
+..+...-+.+-+..-+++.++|+||||+.. .....|+.++..+.+-. ...++.++......+. ...+.
T Consensus 172 tlATDiLmGllk~v~~~rpdLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg------~~PvEi~Yt~e~erDylEaair 242 (699)
T KOG0925|consen 172 TLATDILMGLLKEVVRNRPDLKLVVMSATLDA---EKFQRYFGNAPLLAVPG------THPVEIFYTPEPERDYLEAAIR 242 (699)
T ss_pred hHHHHHHHHHHHHHHhhCCCceEEEeecccch---HHHHHHhCCCCeeecCC------CCceEEEecCCCChhHHHHHHH
Confidence 2222222222222233468999999999875 45667777777765532 1223333333333222 23334
Q ss_pred HHHHHhc--cCCeEEEEecchhHHHHHHHHHHc----------cCCccccccCCCHHHHHHHHHHHhcC-----CccEEE
Q 007106 336 QLITEHA--KGGKCIVFTQTKRDADRLAHAMAK----------SYNCEPLHGDISQSQRERTLSAFRDG-----RFNILI 398 (618)
Q Consensus 336 ~ll~~~~--~~~~~lVf~~~~~~~~~l~~~L~~----------~~~~~~lhg~~~~~~r~~i~~~f~~g-----~~~vLV 398 (618)
.+++-+. ..+.+|||....++++..++.+.+ .+.|..+| +.+++.|++..... ..+|+|
T Consensus 243 tV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVv 318 (699)
T KOG0925|consen 243 TVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVV 318 (699)
T ss_pred HHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEE
Confidence 4444332 367899999999999999988864 24566777 55555666555422 368999
Q ss_pred EccccccCCCCCCccEEEEcCC------------------CCChhHHHHhhhccCCCCCcceEEEEecch
Q 007106 399 ATDVAARGLDVPNVDLIIHYEL------------------PNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 399 aT~~~~~Gidi~~~~~VI~~~~------------------p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
+|++++..+.++.+.+||+-+. |.+-.+..||.||+||. ++|+|+.+|+++
T Consensus 319 stniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 319 STNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred EecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 9999999999999999997442 55677889999999998 799999999876
No 114
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.89 E-value=3.5e-21 Score=207.43 Aligned_cols=312 Identities=21% Similarity=0.305 Sum_probs=216.5
Q ss_pred CCChHHHHHHHHHHhCC----CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007106 120 SKLFPIQKAVLEPAMQG----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~----~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
..+.+-|+.+++.+... ...|+.+.||||||.+|+-.+...+.+ +.++||++|-.+|..|+.++|+.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~---------GkqvLvLVPEI~Ltpq~~~rf~~ 267 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ---------GKQVLVLVPEIALTPQLLARFKA 267 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc---------CCEEEEEeccccchHHHHHHHHH
Confidence 35788999999998766 568999999999999998887777755 78999999999999999999999
Q ss_pred hCCCCcEEEEEcCcchhhhhHH----hhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhc--cCC----cHHH
Q 007106 196 SAPSLDTICVYGGTPISHQMRA----LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML--SVG----FAED 265 (618)
Q Consensus 196 ~~~~~~~~~~~g~~~~~~~~~~----l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~--~~~----~~~~ 265 (618)
.|. .++.+++++-+..++.+. ....+.|||+|-..|+ ..++++.+|||||-|.-. ..+ ....
T Consensus 268 rFg-~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARd 339 (730)
T COG1198 268 RFG-AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARD 339 (730)
T ss_pred HhC-CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHH
Confidence 887 788888887665544333 3345899999965554 347899999999999532 221 1222
Q ss_pred HHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcch-----hHHHHHHHHH
Q 007106 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-----PSIIGQLITE 340 (618)
Q Consensus 266 ~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k-----~~~l~~ll~~ 340 (618)
+. ++..-..++++|+-||||.-+.......- ....+.+...........+............ ..++..+-+.
T Consensus 340 vA-~~Ra~~~~~pvvLgSATPSLES~~~~~~g--~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~ 416 (730)
T COG1198 340 VA-VLRAKKENAPVVLGSATPSLESYANAESG--KYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKT 416 (730)
T ss_pred HH-HHHHHHhCCCEEEecCCCCHHHHHhhhcC--ceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHH
Confidence 22 23333368899999999886554444221 1122222222221112223333222222222 3445555556
Q ss_pred hccCCeEEEEecchhHH------------------------------------------------------------HHH
Q 007106 341 HAKGGKCIVFTQTKRDA------------------------------------------------------------DRL 360 (618)
Q Consensus 341 ~~~~~~~lVf~~~~~~~------------------------------------------------------------~~l 360 (618)
...+.++|+|.|.+-.+ +.+
T Consensus 417 l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gteri 496 (730)
T COG1198 417 LERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERI 496 (730)
T ss_pred HhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHH
Confidence 67789999999987433 455
Q ss_pred HHHHHccC---CccccccCCCHH--HHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCCC------------C
Q 007106 361 AHAMAKSY---NCEPLHGDISQS--QRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN------------T 423 (618)
Q Consensus 361 ~~~L~~~~---~~~~lhg~~~~~--~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~------------~ 423 (618)
++.|.+.+ ++..+.++.+.. .-+.+++.|.+|+.+|||.|+++..|.|+|+++.|...|.+. .
T Consensus 497 eeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~ 576 (730)
T COG1198 497 EEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERT 576 (730)
T ss_pred HHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHH
Confidence 55555433 344455554432 346789999999999999999999999999999988766543 3
Q ss_pred hhHHHHhhhccCCCCCcceEEEEecchh
Q 007106 424 SETFVHRTGRTGRAGKKGSAILIYTDQQ 451 (618)
Q Consensus 424 ~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 451 (618)
...+.|-.||+||.+.+|.+++-....+
T Consensus 577 fqll~QvaGRAgR~~~~G~VvIQT~~P~ 604 (730)
T COG1198 577 FQLLMQVAGRAGRAGKPGEVVIQTYNPD 604 (730)
T ss_pred HHHHHHHHhhhccCCCCCeEEEEeCCCC
Confidence 3457899999999999999888765544
No 115
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.88 E-value=2e-20 Score=203.81 Aligned_cols=123 Identities=21% Similarity=0.414 Sum_probs=108.1
Q ss_pred HHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCC
Q 007106 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410 (618)
Q Consensus 332 ~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~ 410 (618)
.++..+.....++.++||||++++.++.+++.|.+. +++..+|+++++.+|.+++..|++|++.|||||+++++|+|+|
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP 509 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLP 509 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeC
Confidence 344444444456789999999999999999999764 8899999999999999999999999999999999999999999
Q ss_pred CccEEEEcC-----CCCChhHHHHhhhccCCCCCcceEEEEecchhHHHH
Q 007106 411 NVDLIIHYE-----LPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455 (618)
Q Consensus 411 ~~~~VI~~~-----~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~ 455 (618)
++++||++| .|.+...|+||+||++|. ..|.|+++++..+....
T Consensus 510 ~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~ 558 (655)
T TIGR00631 510 EVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQ 558 (655)
T ss_pred CCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHH
Confidence 999999998 688999999999999998 68999999887554333
No 116
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.87 E-value=5.6e-20 Score=209.25 Aligned_cols=331 Identities=18% Similarity=0.194 Sum_probs=199.1
Q ss_pred CHHHHHHHHHcCCCCChHHHHHHHH----HHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc
Q 007106 107 SQDIVAALARRGISKLFPIQKAVLE----PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (618)
Q Consensus 107 ~~~l~~~l~~~~~~~l~~~Q~~~i~----~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt 182 (618)
++.+.+.+...++. ++|.|.++++ .+..++++++.||||+|||++|++|++..+. .+.++||.+||
T Consensus 232 ~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---------~~~~vvi~t~t 301 (850)
T TIGR01407 232 SSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---------TEKPVVISTNT 301 (850)
T ss_pred cHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---------CCCeEEEEeCc
Confidence 34666667666766 8999998666 5556788999999999999999999987653 14589999999
Q ss_pred HHHHHHHHHH----HHHhCC-CCcEEEEEcCcchh---------------------------------------------
Q 007106 183 RELAKQVEKE----FHESAP-SLDTICVYGGTPIS--------------------------------------------- 212 (618)
Q Consensus 183 ~~La~q~~~~----l~~~~~-~~~~~~~~g~~~~~--------------------------------------------- 212 (618)
++|+.|+... +.+.++ +++++++.|..++-
T Consensus 302 ~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~ 381 (850)
T TIGR01407 302 KVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGG 381 (850)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCc
Confidence 9999998653 333332 35555544432110
Q ss_pred --------------------------hhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCC-----
Q 007106 213 --------------------------HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG----- 261 (618)
Q Consensus 213 --------------------------~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~----- 261 (618)
...+.....++|||+++..|+..+......+....++||||||++.+.-
T Consensus 382 ~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~ 461 (850)
T TIGR01407 382 NKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQ 461 (850)
T ss_pred chhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhc
Confidence 0000111248899999999988775544345677899999999874210
Q ss_pred --c-----HH----------------------------------------------------------------HHHHHH
Q 007106 262 --F-----AE----------------------------------------------------------------DVEVIL 270 (618)
Q Consensus 262 --~-----~~----------------------------------------------------------------~~~~il 270 (618)
+ .. .+...+
T Consensus 462 ~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~ 541 (850)
T TIGR01407 462 EELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFD 541 (850)
T ss_pred ceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 0 00 000000
Q ss_pred Hh-----------C-------------------------------------CCCCcEEEEEecCChH-HHHHHHHhccCC
Q 007106 271 ER-----------L-------------------------------------PQNRQSMMFSATMPPW-IRSLTNKYLKNP 301 (618)
Q Consensus 271 ~~-----------l-------------------------------------~~~~~~l~lSAT~~~~-~~~~~~~~l~~~ 301 (618)
.. + +....+|++|||+... ........+.-+
T Consensus 542 ~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~ 621 (850)
T TIGR01407 542 LALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLT 621 (850)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCC
Confidence 00 0 0113578999998631 122232222211
Q ss_pred --ceEeeccCCcccccCCeEEEEEeccC-----cch---hHHHHHHHHHh--ccCCeEEEEecchhHHHHHHHHHHcc--
Q 007106 302 --LTVDLVGDSDQKLADGISLYSIATSM-----YEK---PSIIGQLITEH--AKGGKCIVFTQTKRDADRLAHAMAKS-- 367 (618)
Q Consensus 302 --~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~k---~~~l~~ll~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~-- 367 (618)
....+.+... ....+...+ ++... ... ...+...|.+. ...+++|||+++.+.++.+++.|...
T Consensus 622 ~~~~~~~~~spf-~~~~~~~l~-v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~ 699 (850)
T TIGR01407 622 DVHFNTIEPTPL-NYAENQRVL-IPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPE 699 (850)
T ss_pred ccccceecCCCC-CHHHcCEEE-ecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhcc
Confidence 1111110000 001111111 11111 011 11222222222 23568999999999999999998652
Q ss_pred -CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCcc--EEEEcCCCCC-h-------------------
Q 007106 368 -YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVD--LIIHYELPNT-S------------------- 424 (618)
Q Consensus 368 -~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~--~VI~~~~p~~-~------------------- 424 (618)
....++..+.. .+|.++++.|++++..||++|+.+.+|||+++.. .||+...|.. +
T Consensus 700 ~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~ 778 (850)
T TIGR01407 700 FEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNP 778 (850)
T ss_pred ccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCc
Confidence 12223333333 5788999999999999999999999999999855 6777666641 1
Q ss_pred ----------hHHHHhhhccCCCCCcceEEEEecch
Q 007106 425 ----------ETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 425 ----------~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
..+.|.+||+-|..++.-++++++..
T Consensus 779 f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 779 FYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred hHHhhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 22459999999986655455555543
No 117
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.87 E-value=2.4e-21 Score=201.39 Aligned_cols=318 Identities=17% Similarity=0.221 Sum_probs=214.9
Q ss_pred CChHHHHHHHHHHh----CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007106 121 KLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~----~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
.|.+||.--++++. ++.+.|+..++|.|||..+ ++.+..+.+. +....-|||||... .+.|.++|.+|
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~------g~~gpHLVVvPsST-leNWlrEf~kw 470 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQI------GNPGPHLVVVPSST-LENWLREFAKW 470 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHc------CCCCCcEEEecchh-HHHHHHHHHHh
Confidence 38899999988764 4567899999999999765 5555555442 22445699999854 47899999999
Q ss_pred CCCCcEEEEEcCcchhhhhHHhh----cCCCEEEEChHHHHHHHHh-cCCCCCCccEEEEchhhhhccCCcHHHHHHHHH
Q 007106 197 APSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKR-NALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271 (618)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~-~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~ 271 (618)
||.+++...+|......+.+..- ..++|+|+|+......-.. ..+.-.+++++|+||.|.+.+.. ...++.++.
T Consensus 471 CPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM~ 549 (941)
T KOG0389|consen 471 CPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLMS 549 (941)
T ss_pred CCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhcc
Confidence 99999999998876555444322 2589999999876421111 11223568899999999887763 344444443
Q ss_pred hCCCCCcEEEEEecCC-hHHHHHHHHh-----------------------------------------------------
Q 007106 272 RLPQNRQSMMFSATMP-PWIRSLTNKY----------------------------------------------------- 297 (618)
Q Consensus 272 ~l~~~~~~l~lSAT~~-~~~~~~~~~~----------------------------------------------------- 297 (618)
++ ....|++|.||- +.+.+++...
T Consensus 550 -I~-An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR 627 (941)
T KOG0389|consen 550 -IN-ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRR 627 (941)
T ss_pred -cc-ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 32 345677788862 2222211110
Q ss_pred -----cc----CCceEeeccCCc--------------------------cc-----------------------------
Q 007106 298 -----LK----NPLTVDLVGDSD--------------------------QK----------------------------- 313 (618)
Q Consensus 298 -----l~----~~~~i~~~~~~~--------------------------~~----------------------------- 313 (618)
+. ....|..+.-.+ ..
T Consensus 628 ~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~m 707 (941)
T KOG0389|consen 628 LKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKM 707 (941)
T ss_pred HHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHH
Confidence 00 000000000000 00
Q ss_pred --------------------------------------ccCCeEEEEEeccCcchhHHHHHHHHHhcc-CCeEEEEecch
Q 007106 314 --------------------------------------LADGISLYSIATSMYEKPSIIGQLITEHAK-GGKCIVFTQTK 354 (618)
Q Consensus 314 --------------------------------------~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~-~~~~lVf~~~~ 354 (618)
....+.......-...|...|..++.+..+ +.+||||.+..
T Consensus 708 ak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFT 787 (941)
T KOG0389|consen 708 AKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFT 787 (941)
T ss_pred HHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHH
Confidence 000000000011122245556666666544 68999999999
Q ss_pred hHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCC--ccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhh
Q 007106 355 RDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR--FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRT 431 (618)
Q Consensus 355 ~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~--~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~ 431 (618)
...+.|...|.. .+...-+.|...-.+|+.+++.|...+ ..+|++|.+.+.|||+..+++||++|...+|-+-.|.-
T Consensus 788 qmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAE 867 (941)
T KOG0389|consen 788 QMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAE 867 (941)
T ss_pred HHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhH
Confidence 999999998865 377888999999999999999998765 45699999999999999999999999999999999999
Q ss_pred hccCCCCCcceEEEEecc
Q 007106 432 GRTGRAGKKGSAILIYTD 449 (618)
Q Consensus 432 GR~gR~g~~g~~~~~~~~ 449 (618)
-|++|.|+...+.++-.-
T Consensus 868 DRcHRvGQtkpVtV~rLI 885 (941)
T KOG0389|consen 868 DRCHRVGQTKPVTVYRLI 885 (941)
T ss_pred HHHHhhCCcceeEEEEEE
Confidence 999999987666555443
No 118
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.87 E-value=7.7e-21 Score=205.30 Aligned_cols=320 Identities=18% Similarity=0.222 Sum_probs=217.1
Q ss_pred CChHHHHHHHHHHhC----CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007106 121 KLFPIQKAVLEPAMQ----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~----~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
.|+.||++-++++.- .-+.|++.++|.|||+..+-.+.....+.............|||||. .|+-.|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 478999999988642 35789999999999998754444444333222222334558999996 9999999999999
Q ss_pred CCCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCC
Q 007106 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (618)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~ 276 (618)
+|.+++....|........+..-+.++|+|++++.+.+.+.. +.-.+|.|+|+||-|-+.+ -...+.+.++.+..+
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN--~ktkl~kavkqL~a~ 1129 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKN--SKTKLTKAVKQLRAN 1129 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecc--hHHHHHHHHHHHhhc
Confidence 998887776666665555555556689999999999755543 1234688999999998766 355666666666544
Q ss_pred CcEEEEEecCC-hHHHHHHHHh----------------------------------------------------------
Q 007106 277 RQSMMFSATMP-PWIRSLTNKY---------------------------------------------------------- 297 (618)
Q Consensus 277 ~~~l~lSAT~~-~~~~~~~~~~---------------------------------------------------------- 297 (618)
+.+.+|.||. +.+.+++..|
T Consensus 1130 -hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlK 1208 (1549)
T KOG0392|consen 1130 -HRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLK 1208 (1549)
T ss_pred -ceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4567788873 2333332221
Q ss_pred ---ccC-Cc-eE---------------------------eeccCCccccc----------------CCeEEEEEe-----
Q 007106 298 ---LKN-PL-TV---------------------------DLVGDSDQKLA----------------DGISLYSIA----- 324 (618)
Q Consensus 298 ---l~~-~~-~i---------------------------~~~~~~~~~~~----------------~~~~~~~~~----- 324 (618)
+.+ |. .| ..++....... .+..-....
T Consensus 1209 edVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~ 1288 (1549)
T KOG0392|consen 1209 EDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPD 1288 (1549)
T ss_pred HHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcch
Confidence 000 00 00 00000000000 000000000
Q ss_pred -----------------ccCcchhHHHHHHHHHhc---------------cCCeEEEEecchhHHHHHHHHHHcc-C-Cc
Q 007106 325 -----------------TSMYEKPSIIGQLITEHA---------------KGGKCIVFTQTKRDADRLAHAMAKS-Y-NC 370 (618)
Q Consensus 325 -----------------~~~~~k~~~l~~ll~~~~---------------~~~~~lVf~~~~~~~~~l~~~L~~~-~-~~ 370 (618)
.....|...+.+++.+.. .++++||||+.+..++.+.+.|.+. + .+
T Consensus 1289 la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsV 1368 (1549)
T KOG0392|consen 1289 LAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSV 1368 (1549)
T ss_pred HHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCce
Confidence 011124455566665431 2479999999999999999988554 2 23
Q ss_pred --cccccCCCHHHHHHHHHHHhcC-CccEEE-EccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEE
Q 007106 371 --EPLHGDISQSQRERTLSAFRDG-RFNILI-ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446 (618)
Q Consensus 371 --~~lhg~~~~~~r~~i~~~f~~g-~~~vLV-aT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~ 446 (618)
..+.|..++.+|.++.++|+++ .++||+ +|.+.+.|+|+..+++||+++-+|||..-.|.+-||+|.|++..+-++
T Consensus 1369 tymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVy 1448 (1549)
T KOG0392|consen 1369 TYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVY 1448 (1549)
T ss_pred eEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeee
Confidence 3678999999999999999998 677755 667899999999999999999999999999999999999987664433
No 119
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.87 E-value=6.6e-20 Score=202.23 Aligned_cols=300 Identities=17% Similarity=0.140 Sum_probs=177.3
Q ss_pred ChHHHHHHHHHHh----C------CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHH
Q 007106 122 LFPIQKAVLEPAM----Q------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (618)
Q Consensus 122 l~~~Q~~~i~~i~----~------~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~ 191 (618)
++++|.+|+..+. + .+..|+..+||||||++++..+...+ . ....+++|||+|+.+|..|+.+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~------~~~~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-E------LLKNPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-h------hcCCCeEEEEECcHHHHHHHHH
Confidence 7889999988753 2 24689999999999998765554433 2 1236789999999999999999
Q ss_pred HHHHhCCCCcEEEEEcCcchhhhhHHhhc-CCCEEEEChHHHHHHHHhc--CCCCCCc-cEEEEchhhhhccCCcHHHHH
Q 007106 192 EFHESAPSLDTICVYGGTPISHQMRALDY-GVDAVVGTPGRVIDLIKRN--ALNLSEV-QFVVLDEADQMLSVGFAEDVE 267 (618)
Q Consensus 192 ~l~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~Ilv~T~~~l~~~l~~~--~~~l~~~-~~vViDEaH~~~~~~~~~~~~ 267 (618)
.+..+..... ....+.......+.. ...|+|+|.++|...+... ....... -+||+||||+.. ...+.
T Consensus 312 ~f~~~~~~~~----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~----~~~~~ 383 (667)
T TIGR00348 312 EFQSLQKDCA----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQ----YGELA 383 (667)
T ss_pred HHHhhCCCCC----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCcccc----chHHH
Confidence 9998764211 111122222222322 3689999999998644331 1111112 289999999863 23344
Q ss_pred HHHHhCCCCCcEEEEEecCChH----HHHHHHHhccCCceE-eeccCCcccccCCeEEEEEec-----------------
Q 007106 268 VILERLPQNRQSMMFSATMPPW----IRSLTNKYLKNPLTV-DLVGDSDQKLADGISLYSIAT----------------- 325 (618)
Q Consensus 268 ~il~~l~~~~~~l~lSAT~~~~----~~~~~~~~l~~~~~i-~~~~~~~~~~~~~~~~~~~~~----------------- 325 (618)
..+...-++..+|+|||||... ........+.++... .+...........+.......
T Consensus 384 ~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~ 463 (667)
T TIGR00348 384 KNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIF 463 (667)
T ss_pred HHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHH
Confidence 4443333567899999999532 111111000111100 000000000000000000000
Q ss_pred -------cCc--------------------chhHHHHHHHHHh----c-cCCeEEEEecchhHHHHHHHHHHccC-----
Q 007106 326 -------SMY--------------------EKPSIIGQLITEH----A-KGGKCIVFTQTKRDADRLAHAMAKSY----- 368 (618)
Q Consensus 326 -------~~~--------------------~k~~~l~~ll~~~----~-~~~~~lVf~~~~~~~~~l~~~L~~~~----- 368 (618)
... .......++++.. . ...+++|||.++..|..+++.|.+.+
T Consensus 464 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~ 543 (667)
T TIGR00348 464 ELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFE 543 (667)
T ss_pred HhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccC
Confidence 000 0001111122111 1 24799999999999999998885532
Q ss_pred -CccccccCCCHH---------------------HHHHHHHHHhc-CCccEEEEccccccCCCCCCccEEEEcCCCCChh
Q 007106 369 -NCEPLHGDISQS---------------------QRERTLSAFRD-GRFNILIATDVAARGLDVPNVDLIIHYELPNTSE 425 (618)
Q Consensus 369 -~~~~lhg~~~~~---------------------~r~~i~~~f~~-g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~ 425 (618)
....+++....+ ..+.++++|++ +..+|||+++.+.+|+|.|.+++++..-+..+.
T Consensus 544 ~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~h- 622 (667)
T TIGR00348 544 ASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKYH- 622 (667)
T ss_pred CeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccccc-
Confidence 223344332221 22468888976 678999999999999999999999887766654
Q ss_pred HHHHhhhccCCC
Q 007106 426 TFVHRTGRTGRA 437 (618)
Q Consensus 426 ~~~Qr~GR~gR~ 437 (618)
.++|.+||+.|.
T Consensus 623 ~LlQai~R~nR~ 634 (667)
T TIGR00348 623 GLLQAIARTNRI 634 (667)
T ss_pred HHHHHHHHhccc
Confidence 589999999994
No 120
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.87 E-value=1.4e-19 Score=181.38 Aligned_cols=165 Identities=22% Similarity=0.335 Sum_probs=128.9
Q ss_pred CCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHHhccCCeEEEEecchh
Q 007106 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKR 355 (618)
Q Consensus 276 ~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~ 355 (618)
..|+|++||||.+.-.+... ...+..+-.+...+...+ .+........+++.++.+...++.++||-+-|++
T Consensus 386 ~~q~i~VSATPg~~E~e~s~-----~~vveQiIRPTGLlDP~i---evRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKk 457 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSG-----GNVVEQIIRPTGLLDPEI---EVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKK 457 (663)
T ss_pred cCCEEEEECCCChHHHHhcc-----CceeEEeecCCCCCCCce---eeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHH
Confidence 46999999999875443322 122222212211222222 2333444556677777777778899999999999
Q ss_pred HHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCCC-----ChhHHHH
Q 007106 356 DADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN-----TSETFVH 429 (618)
Q Consensus 356 ~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~-----~~~~~~Q 429 (618)
.++.|.++|.+. +++..+|++...-+|.+|+..++.|.++|||..+.+-+|||+|.|..|.++|+.. +-..++|
T Consensus 458 mAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQ 537 (663)
T COG0556 458 MAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQ 537 (663)
T ss_pred HHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHH
Confidence 999999999765 9999999999999999999999999999999999999999999999999999864 8889999
Q ss_pred hhhccCCCCCcceEEEEecc
Q 007106 430 RTGRTGRAGKKGSAILIYTD 449 (618)
Q Consensus 430 r~GR~gR~g~~g~~~~~~~~ 449 (618)
-+|||.|. -.|.++++.+.
T Consensus 538 tIGRAARN-~~GkvIlYAD~ 556 (663)
T COG0556 538 TIGRAARN-VNGKVILYADK 556 (663)
T ss_pred HHHHHhhc-cCCeEEEEchh
Confidence 99999997 46788888764
No 121
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.87 E-value=1.3e-19 Score=199.11 Aligned_cols=142 Identities=23% Similarity=0.414 Sum_probs=120.6
Q ss_pred HHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCC
Q 007106 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410 (618)
Q Consensus 332 ~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~ 410 (618)
.++..+......+.++||||++++.++.+++.|.+. +++..+|+++++.+|..+++.|+.|++.|+|||+++++|+|+|
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp 513 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIP 513 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCcccc
Confidence 333444344455789999999999999999999764 8899999999999999999999999999999999999999999
Q ss_pred CccEEEEcCC-----CCChhHHHHhhhccCCCCCcceEEEEecc---------hhHHHHHHHHHHhCCCcccCCcccc
Q 007106 411 NVDLIIHYEL-----PNTSETFVHRTGRTGRAGKKGSAILIYTD---------QQARQVKSIERDVGCRFTQLPRIAV 474 (618)
Q Consensus 411 ~~~~VI~~~~-----p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~---------~~~~~~~~l~~~l~~~~~~~~~~~~ 474 (618)
++++||+++. |.+...|+||+||+||. ..|.|+++++. .+...++.++..++.....+|.-.+
T Consensus 514 ~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 590 (652)
T PRK05298 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTIK 590 (652)
T ss_pred CCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhHH
Confidence 9999999886 67999999999999997 78999999984 4556667777777777776665443
No 122
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.86 E-value=9.2e-21 Score=199.91 Aligned_cols=295 Identities=22% Similarity=0.267 Sum_probs=191.2
Q ss_pred CChHHHHHHHHHHh----CCC-CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007106 121 KLFPIQKAVLEPAM----QGR-DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~----~~~-~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
.++.+|..||..+. +++ .+|+++.||+|||.++ ++++..+++.. .-.++|+|+-+++|+.|.+..+..
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~------~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSG------WVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcc------hhheeeEEechHHHHHHHHHHHHH
Confidence 47899999987654 343 4999999999999988 45555665532 245899999999999999999999
Q ss_pred hCCCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhc-----CCCCCCccEEEEchhhhhccCCcHHHHHHHH
Q 007106 196 SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-----ALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270 (618)
Q Consensus 196 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~-----~~~l~~~~~vViDEaH~~~~~~~~~~~~~il 270 (618)
+.|.-........... ...+.|.|+|+..+....... .+....+++||||||||- .......++
T Consensus 238 ~~P~~~~~n~i~~~~~-------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg----i~~~~~~I~ 306 (875)
T COG4096 238 FLPFGTKMNKIEDKKG-------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG----IYSEWSSIL 306 (875)
T ss_pred hCCCccceeeeecccC-------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh----HHhhhHHHH
Confidence 9986655443322221 124789999999998777554 344556899999999984 445556777
Q ss_pred HhCCCCCcEEEEEecCChHHHHHHHHhc-cCC------------------ceEeeccCC-------------cccccCCe
Q 007106 271 ERLPQNRQSMMFSATMPPWIRSLTNKYL-KNP------------------LTVDLVGDS-------------DQKLADGI 318 (618)
Q Consensus 271 ~~l~~~~~~l~lSAT~~~~~~~~~~~~l-~~~------------------~~i~~~~~~-------------~~~~~~~~ 318 (618)
..+..-. +.+||||.+....-...|+ ..| ..+.+.-+. +......+
T Consensus 307 dYFdA~~--~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i 384 (875)
T COG4096 307 DYFDAAT--QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAI 384 (875)
T ss_pred HHHHHHH--HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcccc
Confidence 7764333 3449998764433333333 211 111110000 00000000
Q ss_pred --E-EEEEecc------CcchhHHHHHHHHHh-cc------CCeEEEEecchhHHHHHHHHHHccCC------ccccccC
Q 007106 319 --S-LYSIATS------MYEKPSIIGQLITEH-AK------GGKCIVFTQTKRDADRLAHAMAKSYN------CEPLHGD 376 (618)
Q Consensus 319 --~-~~~~~~~------~~~k~~~l~~ll~~~-~~------~~~~lVf~~~~~~~~~l~~~L~~~~~------~~~lhg~ 376 (618)
. ..+...+ .......+...+.+. .+ -.|+||||.+..+|+.+.+.|.+.++ |..+.++
T Consensus 385 ~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d 464 (875)
T COG4096 385 DEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGD 464 (875)
T ss_pred CcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEecc
Confidence 0 0000000 000111222222222 11 36999999999999999999976543 4455665
Q ss_pred CCHHHHHHHHHHHhc--CCccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCC
Q 007106 377 ISQSQRERTLSAFRD--GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRA 437 (618)
Q Consensus 377 ~~~~~r~~i~~~f~~--g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~ 437 (618)
-.+. +..+..|.. ..-.|.|+.+.+..|||+|.+..+|++-.-.|...|.|++||.-|.
T Consensus 465 ~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 465 AEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred chhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 4333 344555544 3356888889999999999999999999999999999999999995
No 123
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=3.2e-21 Score=200.06 Aligned_cols=304 Identities=18% Similarity=0.236 Sum_probs=191.3
Q ss_pred HHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH----hCCCCcE
Q 007106 127 KAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE----SAPSLDT 202 (618)
Q Consensus 127 ~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~----~~~~~~~ 202 (618)
++++++|..+.-+||+++||||||...-..++.+=..... ......+-|..|.|.-|..+++++.. +...+..
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~---~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsY 338 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQ---SSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSY 338 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCcc---CCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeE
Confidence 3556677777779999999999998654444443222111 11244788889999777666665543 2223334
Q ss_pred EEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhC-------C-
Q 007106 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-------P- 274 (618)
Q Consensus 203 ~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l-------~- 274 (618)
.+-+.+.- .....|.++|.+.|++.+.++.+ +..++.|||||||.-.- ..+.+.-++.++ .
T Consensus 339 qIRfd~ti--------~e~T~IkFMTDGVLLrEi~~Dfl-L~kYSvIIlDEAHERSv--nTDILiGmLSRiV~LR~k~~k 407 (1172)
T KOG0926|consen 339 QIRFDGTI--------GEDTSIKFMTDGVLLREIENDFL-LTKYSVIILDEAHERSV--NTDILIGMLSRIVPLRQKYYK 407 (1172)
T ss_pred EEEecccc--------CCCceeEEecchHHHHHHHHhHh-hhhceeEEechhhhccc--hHHHHHHHHHHHHHHHHHHhh
Confidence 44443332 33468999999999999887654 88999999999995321 111122222221 1
Q ss_pred -----CCCcEEEEEecCChHHHHHHHHhccC-CceEeeccCCcccccCCeEEEE-EeccCcchhHHHHHHHHH--hccCC
Q 007106 275 -----QNRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYS-IATSMYEKPSIIGQLITE--HAKGG 345 (618)
Q Consensus 275 -----~~~~~l~lSAT~~~~~~~~~~~~l~~-~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~k~~~l~~ll~~--~~~~~ 345 (618)
+..++|+||||+.-....-...++.. |..+.+ +. .. ..+.+++ .....+.........++- ..+.+
T Consensus 408 e~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikV-dA--RQ--fPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G 482 (1172)
T KOG0926|consen 408 EQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKV-DA--RQ--FPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPG 482 (1172)
T ss_pred hhcccCceeEEEEeeeEEecccccCceecCCCCceeee-ec--cc--CceEEEeccCCCchHHHHHHHHHHHHhhcCCCC
Confidence 24578999999864322222223322 222222 11 11 1111111 122223333334333332 23577
Q ss_pred eEEEEecchhHHHHHHHHHHccCC--------------------------------------------------------
Q 007106 346 KCIVFTQTKRDADRLAHAMAKSYN-------------------------------------------------------- 369 (618)
Q Consensus 346 ~~lVf~~~~~~~~~l~~~L~~~~~-------------------------------------------------------- 369 (618)
-+|||+....+++.|++.|++.++
T Consensus 483 ~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~ 562 (1172)
T KOG0926|consen 483 GILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFA 562 (1172)
T ss_pred cEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccch
Confidence 999999999999999999976321
Q ss_pred --------------------------------------------ccccccCCCHHHHHHHHHHHhcCCccEEEEcccccc
Q 007106 370 --------------------------------------------CEPLHGDISQSQRERTLSAFRDGRFNILIATDVAAR 405 (618)
Q Consensus 370 --------------------------------------------~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~ 405 (618)
|..+++-++.+++.++++.-.+|..-++|||++++.
T Consensus 563 ~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAET 642 (1172)
T KOG0926|consen 563 SLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAET 642 (1172)
T ss_pred hhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhc
Confidence 122344456677777877778899999999999999
Q ss_pred CCCCCCccEEEEcC--------CCC----------ChhHHHHhhhccCCCCCcceEEEEecch
Q 007106 406 GLDVPNVDLIIHYE--------LPN----------TSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 406 Gidi~~~~~VI~~~--------~p~----------~~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
.|.||.+.+||+.+ .-. +-..--||+|||||.| +|.||.+|...
T Consensus 643 SLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 643 SLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred ccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 99999999999744 322 3334469999999996 89999999765
No 124
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.86 E-value=9e-20 Score=195.25 Aligned_cols=286 Identities=21% Similarity=0.335 Sum_probs=191.7
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHH
Q 007106 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (618)
Q Consensus 109 ~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q 188 (618)
++.+.+++.--++|+..|+-....+..+++.-+.||||.|||..-++..+-... .+.++++|+||..|+.|
T Consensus 70 ~~~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~---------kgkr~yii~PT~~Lv~Q 140 (1187)
T COG1110 70 EFEEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAK---------KGKRVYIIVPTTTLVRQ 140 (1187)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHh---------cCCeEEEEecCHHHHHH
Confidence 344556665555799999999999999999999999999999644433333322 26789999999999999
Q ss_pred HHHHHHHhCCCCc---EEE-EEcCcchhhhhH---Hhhc-CCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccC
Q 007106 189 VEKEFHESAPSLD---TIC-VYGGTPISHQMR---ALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260 (618)
Q Consensus 189 ~~~~l~~~~~~~~---~~~-~~g~~~~~~~~~---~l~~-~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~ 260 (618)
+++.+.++..... +.. .|+..+.....+ .+.+ +++|+|+|..-|...+.. +.-.++++|++|.+|.++..
T Consensus 141 ~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~Lka 218 (1187)
T COG1110 141 VYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKA 218 (1187)
T ss_pred HHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhc
Confidence 9999998874322 222 344434433332 3333 599999999888766654 21247899999999987532
Q ss_pred C-----------cHH-----------------------HHHHHHHhC--------CCCCcEEEEEecCChHH-HH-HHHH
Q 007106 261 G-----------FAE-----------------------DVEVILERL--------PQNRQSMMFSATMPPWI-RS-LTNK 296 (618)
Q Consensus 261 ~-----------~~~-----------------------~~~~il~~l--------~~~~~~l~lSAT~~~~~-~~-~~~~ 296 (618)
. |.. .++++++.. .+..++++.|||..+.- +. +...
T Consensus 219 skNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfRe 298 (1187)
T COG1110 219 SKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRE 298 (1187)
T ss_pred cccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHH
Confidence 1 111 111111110 12357899999985532 21 2222
Q ss_pred hccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHHhccCCeEEEEecc---hhHHHHHHHHHHcc-CCccc
Q 007106 297 YLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQT---KRDADRLAHAMAKS-YNCEP 372 (618)
Q Consensus 297 ~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~---~~~~~~l~~~L~~~-~~~~~ 372 (618)
.+ .+.+ ......+.+.+..+... .-...+..+++.... -.|||++. ++.+++++++|... +++..
T Consensus 299 Ll----gFev-G~~~~~LRNIvD~y~~~----~~~e~~~elvk~lG~--GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~ 367 (1187)
T COG1110 299 LL----GFEV-GSGGEGLRNIVDIYVES----ESLEKVVELVKKLGD--GGLIFVPIDYGREKAEELAEYLRSHGINAEL 367 (1187)
T ss_pred Hh----CCcc-CccchhhhheeeeeccC----ccHHHHHHHHHHhCC--CeEEEEEcHHhHHHHHHHHHHHHhcCceEEE
Confidence 22 1111 11111112222222222 345556677777654 57999999 99999999999775 99999
Q ss_pred cccCCCHHHHHHHHHHHhcCCccEEEEc----cccccCCCCCC-ccEEEEcCCC
Q 007106 373 LHGDISQSQRERTLSAFRDGRFNILIAT----DVAARGLDVPN-VDLIIHYELP 421 (618)
Q Consensus 373 lhg~~~~~~r~~i~~~f~~g~~~vLVaT----~~~~~Gidi~~-~~~VI~~~~p 421 (618)
+|+. +++.++.|..|+++|||.. .++-+|||+|. +.++|+++.|
T Consensus 368 ~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 368 IHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred eecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 9974 2678999999999999976 47899999997 8899998877
No 125
>COG4889 Predicted helicase [General function prediction only]
Probab=99.86 E-value=1.8e-21 Score=203.34 Aligned_cols=339 Identities=19% Similarity=0.249 Sum_probs=206.8
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCC----CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCC
Q 007106 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRG 171 (618)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~----~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~ 171 (618)
++..+|+.+.. .++..+|.-+...+|+|||+.|++...++ ...-+++.+|+|||+++|- +.+.+.
T Consensus 137 es~IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala--------- 205 (1518)
T COG4889 137 ESPIDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALA--------- 205 (1518)
T ss_pred cCCCChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHh---------
Confidence 45577777654 67778887888899999999999998865 2356778899999998753 333332
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhC-CCCcEEEEEcCcchhhh-----------------------h--HHhhcCCCEE
Q 007106 172 RNPLCLVLAPTRELAKQVEKEFHESA-PSLDTICVYGGTPISHQ-----------------------M--RALDYGVDAV 225 (618)
Q Consensus 172 ~~~~~lil~Pt~~La~q~~~~l~~~~-~~~~~~~~~g~~~~~~~-----------------------~--~~l~~~~~Il 225 (618)
..++|+++|+.+|..|..+++..-. -.++...++.......- . .....+--||
T Consensus 206 -~~~iL~LvPSIsLLsQTlrew~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vv 284 (1518)
T COG4889 206 -AARILFLVPSISLLSQTLREWTAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVV 284 (1518)
T ss_pred -hhheEeecchHHHHHHHHHHHhhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEE
Confidence 2579999999999999998886532 23444444443222111 0 0111245699
Q ss_pred EEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCC-----CCCcEEEEEecCCh---HHHHHHH--
Q 007106 226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-----QNRQSMMFSATMPP---WIRSLTN-- 295 (618)
Q Consensus 226 v~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~-----~~~~~l~lSAT~~~---~~~~~~~-- 295 (618)
++|++.+...-+....-+..+++||+||||+.........-...+.++. +..+.+.|||||.- ..+..+.
T Consensus 285 FsTYQSl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~ 364 (1518)
T COG4889 285 FSTYQSLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDH 364 (1518)
T ss_pred EEcccchHHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhc
Confidence 9999999877777677789999999999998643221111111111111 12356889999831 1111111
Q ss_pred ----------------------------HhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHH-------HHHHHH
Q 007106 296 ----------------------------KYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII-------GQLITE 340 (618)
Q Consensus 296 ----------------------------~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l-------~~ll~~ 340 (618)
.++.+...+.+.-+. ..+...+..........-+.+-. .-+.++
T Consensus 365 s~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~-~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr 443 (1518)
T COG4889 365 SAELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDK-EVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKR 443 (1518)
T ss_pred cceeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEech-hhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhh
Confidence 112222222111000 00000000000000000000000 111111
Q ss_pred hc-------------cCCeEEEEecchhHHHHHHHHHHc-----------c-----CCccccccCCCHHHHHHHHH---H
Q 007106 341 HA-------------KGGKCIVFTQTKRDADRLAHAMAK-----------S-----YNCEPLHGDISQSQRERTLS---A 388 (618)
Q Consensus 341 ~~-------------~~~~~lVf~~~~~~~~~l~~~L~~-----------~-----~~~~~lhg~~~~~~r~~i~~---~ 388 (618)
.. +-.+.+-||.++++...+++.+.+ . +.|..+.|.|+..+|...+. .
T Consensus 444 ~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~ 523 (1518)
T COG4889 444 NGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNT 523 (1518)
T ss_pred ccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCC
Confidence 11 113678899999888777665432 1 23445568999999955443 3
Q ss_pred HhcCCccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCC-CcceEEEEe
Q 007106 389 FRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAG-KKGSAILIY 447 (618)
Q Consensus 389 f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g-~~g~~~~~~ 447 (618)
|...+|+||--..++++|||+|.++.||++++-.+..+.+|.+||+.|.. .+.+.|++.
T Consensus 524 ~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIIL 583 (1518)
T COG4889 524 FEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIIL 583 (1518)
T ss_pred CCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEE
Confidence 45678999999999999999999999999999999999999999999942 344455554
No 126
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.85 E-value=2.8e-19 Score=191.48 Aligned_cols=320 Identities=19% Similarity=0.229 Sum_probs=200.9
Q ss_pred CChHHHHHHHHHHhCC----------CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHH
Q 007106 121 KLFPIQKAVLEPAMQG----------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~----------~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 190 (618)
.++|||++.+.-+.++ ..+|+...+|+|||+..+..+...+.+.....+ .-.++||||| ..|+..|+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~--~~~k~lVV~P-~sLv~nWk 314 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKP--LINKPLVVAP-SSLVNNWK 314 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccc--cccccEEEcc-HHHHHHHH
Confidence 4899999999866442 238999999999999876555555443221100 1267999999 59999999
Q ss_pred HHHHHhCC--CCcEEEEEcCcchhhh-hH-Hh-----hcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCC
Q 007106 191 KEFHESAP--SLDTICVYGGTPISHQ-MR-AL-----DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261 (618)
Q Consensus 191 ~~l~~~~~--~~~~~~~~g~~~~~~~-~~-~l-----~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~ 261 (618)
++|.+|.. .+....+++.....+. .. .+ .....|++.+++.+.+.+.. +....+++||+||.|++.+.
T Consensus 315 kEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~- 391 (776)
T KOG0390|consen 315 KEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNS- 391 (776)
T ss_pred HHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccch-
Confidence 99999975 4555555655543111 00 01 11257899999999766654 44678999999999998764
Q ss_pred cHHHHHHHHHhCCCCCcEEEEEecCCh-H---------------------------------------------------
Q 007106 262 FAEDVEVILERLPQNRQSMMFSATMPP-W--------------------------------------------------- 289 (618)
Q Consensus 262 ~~~~~~~il~~l~~~~~~l~lSAT~~~-~--------------------------------------------------- 289 (618)
...+...+..+. -.+.|++|.||-. +
T Consensus 392 -~s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~e 469 (776)
T KOG0390|consen 392 -DSLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQE 469 (776)
T ss_pred -hhHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHH
Confidence 455566666664 3456778888721 1
Q ss_pred HHHHHHHhccC------------CceEeeccCC------------cc---c---------------ccCCe---------
Q 007106 290 IRSLTNKYLKN------------PLTVDLVGDS------------DQ---K---------------LADGI--------- 318 (618)
Q Consensus 290 ~~~~~~~~l~~------------~~~i~~~~~~------------~~---~---------------~~~~~--------- 318 (618)
+.++...++.. ...+.++-.. .. . +..+.
T Consensus 470 L~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~ 549 (776)
T KOG0390|consen 470 LRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKT 549 (776)
T ss_pred HHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccc
Confidence 11111111100 0000000000 00 0 00000
Q ss_pred ---------------EEEEEe---ccCcchhHHHHHHHHHhcc--CCeEEEEecchhHHHHHHHHHH-ccCCccccccCC
Q 007106 319 ---------------SLYSIA---TSMYEKPSIIGQLITEHAK--GGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDI 377 (618)
Q Consensus 319 ---------------~~~~~~---~~~~~k~~~l~~ll~~~~~--~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~lhg~~ 377 (618)
...... .....+...+..++..... ..+++++.|.+...+.+..... +++.+..+||.|
T Consensus 550 ~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~ 629 (776)
T KOG0390|consen 550 EKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKT 629 (776)
T ss_pred cccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCC
Confidence 000000 0001122223333322211 2244444454555554444442 368899999999
Q ss_pred CHHHHHHHHHHHhcCC---ccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEec
Q 007106 378 SQSQRERTLSAFRDGR---FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448 (618)
Q Consensus 378 ~~~~r~~i~~~f~~g~---~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~ 448 (618)
+..+|+.+++.|++.. .-+|.+|.+.+.||++-.++.||.+|++|||+.-.|.+.||.|.||+..|+++-.
T Consensus 630 ~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrL 703 (776)
T KOG0390|consen 630 SIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRL 703 (776)
T ss_pred chHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEe
Confidence 9999999999998754 4467888999999999999999999999999999999999999999999988764
No 127
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=8.6e-21 Score=187.64 Aligned_cols=293 Identities=21% Similarity=0.228 Sum_probs=197.8
Q ss_pred CCChHHHHHHHHHHhCC---CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007106 120 SKLFPIQKAVLEPAMQG---RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~---~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
..++|||++++..+.-+ ++.||..|+|+|||++-+-++... ...+||+|.+-..+.||..+++.|
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti------------kK~clvLcts~VSVeQWkqQfk~w 368 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI------------KKSCLVLCTSAVSVEQWKQQFKQW 368 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee------------cccEEEEecCccCHHHHHHHHHhh
Confidence 46899999999988765 568999999999999876555432 457999999999999999999987
Q ss_pred CC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHh--------cCCCCCCccEEEEchhhhhccCCcHHHH
Q 007106 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR--------NALNLSEVQFVVLDEADQMLSVGFAEDV 266 (618)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~--------~~~~l~~~~~vViDEaH~~~~~~~~~~~ 266 (618)
.. +-.++..+.... +....++.|+|+|+.++..--++ +.+.-+.|.++|+||+|.+.. ..+
T Consensus 369 sti~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA----~MF 439 (776)
T KOG1123|consen 369 STIQDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPA----KMF 439 (776)
T ss_pred cccCccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchH----HHH
Confidence 63 222333332222 22345689999999887522111 112346789999999998743 444
Q ss_pred HHHHHhCCCCCcEEEEEecCChHHHHHHH-HhccCCceEe--------------e--c----cCC-----cccccCCeEE
Q 007106 267 EVILERLPQNRQSMMFSATMPPWIRSLTN-KYLKNPLTVD--------------L--V----GDS-----DQKLADGISL 320 (618)
Q Consensus 267 ~~il~~l~~~~~~l~lSAT~~~~~~~~~~-~~l~~~~~i~--------------~--~----~~~-----~~~~~~~~~~ 320 (618)
++++..+..++ .+.+|||+-.+...... .|+..|..+. + . +.. +.........
T Consensus 440 RRVlsiv~aHc-KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr 518 (776)
T KOG1123|consen 440 RRVLSIVQAHC-KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKR 518 (776)
T ss_pred HHHHHHHHHHh-hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhh
Confidence 55555544444 48899998543222111 1111111110 0 0 000 0000000011
Q ss_pred EEEeccCcchhHHHHHHHHHhc-cCCeEEEEecchhHHHHHHHHHHccCCccccccCCCHHHHHHHHHHHhcC-CccEEE
Q 007106 321 YSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDG-RFNILI 398 (618)
Q Consensus 321 ~~~~~~~~~k~~~l~~ll~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~i~~~f~~g-~~~vLV 398 (618)
..+......|......+|+-+. .+.++|||..++-.....+-.|.+ ..|.|..++.+|.+|++.|+-+ .+.-++
T Consensus 519 ~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIF 594 (776)
T KOG1123|consen 519 MLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK----PFIYGPTSQNERMKILQNFQTNPKVNTIF 594 (776)
T ss_pred heeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC----ceEECCCchhHHHHHHHhcccCCccceEE
Confidence 1222333456677777777664 478999999988887777766643 4588999999999999999865 477788
Q ss_pred EccccccCCCCCCccEEEEcCCCC-ChhHHHHhhhccCCCC
Q 007106 399 ATDVAARGLDVPNVDLIIHYELPN-TSETFVHRTGRTGRAG 438 (618)
Q Consensus 399 aT~~~~~Gidi~~~~~VI~~~~p~-~~~~~~Qr~GR~gR~g 438 (618)
...+....+|+|.++++|...... +-.+-.||.||+.|+.
T Consensus 595 lSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 595 LSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred EeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 889999999999999999988877 7788899999999974
No 128
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.84 E-value=2.1e-19 Score=170.12 Aligned_cols=182 Identities=42% Similarity=0.673 Sum_probs=147.5
Q ss_pred cCCCCChHHHHHHHHHHhCC-CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007106 117 RGISKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~-~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
.++..++++|.++++.+... +.+++.++||+|||.+++.+++..+... ...+++|++|+..++.|+...+.+
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~-------~~~~~l~~~p~~~~~~~~~~~~~~ 76 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG-------KGKRVLVLVPTRELAEQWAEELKK 76 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc-------CCCcEEEEeCCHHHHHHHHHHHHH
Confidence 45678999999999999988 8999999999999999888888876541 135799999999999999999998
Q ss_pred hCCCC--cEEEEEcCcchhhhhHHhhcCC-CEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHh
Q 007106 196 SAPSL--DTICVYGGTPISHQMRALDYGV-DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272 (618)
Q Consensus 196 ~~~~~--~~~~~~g~~~~~~~~~~l~~~~-~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~ 272 (618)
.++.. .......+.........+.... +|+++|++.+.+.+.........++++|+||+|.+....+...+..++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~ 156 (201)
T smart00487 77 LGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKL 156 (201)
T ss_pred HhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHh
Confidence 87542 2333444444344444444554 99999999999998887666778999999999998875578888899998
Q ss_pred CCCCCcEEEEEecCChHHHHHHHHhccCCceEe
Q 007106 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVD 305 (618)
Q Consensus 273 l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~ 305 (618)
+++..+++++|||+++........++.....+.
T Consensus 157 ~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~ 189 (201)
T smart00487 157 LPKNVQLLLLSATPPEEIENLLELFLNDPVFID 189 (201)
T ss_pred CCccceEEEEecCCchhHHHHHHHhcCCCEEEe
Confidence 888899999999999988888888877555554
No 129
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=1.3e-18 Score=184.24 Aligned_cols=312 Identities=18% Similarity=0.225 Sum_probs=201.3
Q ss_pred CChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC-
Q 007106 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS- 199 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~- 199 (618)
.+++.|.-..-.++++ -|+.+.||+|||+++.+|++...+. +..+.|++|+..||.+.++++..++..
T Consensus 78 r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~---------G~~VhvvT~NdyLA~RDae~m~~ly~~L 146 (764)
T PRK12326 78 RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQ---------GRRVHVITVNDYLARRDAEWMGPLYEAL 146 (764)
T ss_pred CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHc---------CCCeEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 3788888888777765 5779999999999999999877765 788999999999999999999988764
Q ss_pred -CcEEEEEcCcchhhhhHHhhcCCCEEEEChHHH-HHHHHhcC------CCCCCccEEEEchhhhhccC-----------
Q 007106 200 -LDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQMLSV----------- 260 (618)
Q Consensus 200 -~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l-~~~l~~~~------~~l~~~~~vViDEaH~~~~~----------- 260 (618)
+.+.++.+..+...+... ..|+|+++|...| .++|.... ...+.+.++||||+|.++-.
T Consensus 147 GLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~ 224 (764)
T PRK12326 147 GLTVGWITEESTPEERRAA--YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGS 224 (764)
T ss_pred CCEEEEECCCCCHHHHHHH--HcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCC
Confidence 566666666655443333 3589999999887 44443321 12456889999999987421
Q ss_pred ----CcHHHHHHHHHhCCCC--------CcEEEEEe--------------------------------------------
Q 007106 261 ----GFAEDVEVILERLPQN--------RQSMMFSA-------------------------------------------- 284 (618)
Q Consensus 261 ----~~~~~~~~il~~l~~~--------~~~l~lSA-------------------------------------------- 284 (618)
.....+..+...+... .+.+.+|.
T Consensus 225 ~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dY 304 (764)
T PRK12326 225 TPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHY 304 (764)
T ss_pred CcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcE
Confidence 1223334444444321 12222222
Q ss_pred ------------------------------------------------------------------cCChHHHHHHHHhc
Q 007106 285 ------------------------------------------------------------------TMPPWIRSLTNKYL 298 (618)
Q Consensus 285 ------------------------------------------------------------------T~~~~~~~~~~~~l 298 (618)
|......++..-|-
T Consensus 305 iV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~ 384 (764)
T PRK12326 305 IVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYD 384 (764)
T ss_pred EEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhC
Confidence 11111110000000
Q ss_pred cCCceEeeccCCcccccCCeEEEEEeccCcchhH-HHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccC
Q 007106 299 KNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS-IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGD 376 (618)
Q Consensus 299 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~-~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~ 376 (618)
.. +..++...+........ .+.....+|.. ++.++.+.+..+.++||.|.+++.++.+.+.|.+. +++.++++.
T Consensus 385 --l~-Vv~IPtnkp~~R~d~~d-~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk 460 (764)
T PRK12326 385 --LG-VSVIPPNKPNIREDEAD-RVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAK 460 (764)
T ss_pred --Cc-EEECCCCCCceeecCCC-ceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccC
Confidence 00 00000000000000000 11112222333 34445555678999999999999999999999765 888888887
Q ss_pred CCHHHHHHHHHHHhcCC-ccEEEEccccccCCCCCCc---------------cEEEEcCCCCChhHHHHhhhccCCCCCc
Q 007106 377 ISQSQRERTLSAFRDGR-FNILIATDVAARGLDVPNV---------------DLIIHYELPNTSETFVHRTGRTGRAGKK 440 (618)
Q Consensus 377 ~~~~~r~~i~~~f~~g~-~~vLVaT~~~~~Gidi~~~---------------~~VI~~~~p~~~~~~~Qr~GR~gR~g~~ 440 (618)
....|- +|+. +.|+ -.|.|||++++||.||.-- -|||-...+.|..--.|..||+||.|.+
T Consensus 461 ~~~~EA-~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDp 537 (764)
T PRK12326 461 NDAEEA-RIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDP 537 (764)
T ss_pred chHhHH-HHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCC
Confidence 443332 2222 2343 5699999999999998621 2788888899988889999999999999
Q ss_pred ceEEEEecchhH
Q 007106 441 GSAILIYTDQQA 452 (618)
Q Consensus 441 g~~~~~~~~~~~ 452 (618)
|.+..|++-+|.
T Consensus 538 Gss~f~lSleDd 549 (764)
T PRK12326 538 GSSVFFVSLEDD 549 (764)
T ss_pred CceeEEEEcchh
Confidence 999888876543
No 130
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.83 E-value=1.5e-19 Score=178.91 Aligned_cols=327 Identities=16% Similarity=0.189 Sum_probs=215.5
Q ss_pred CCCCChHHHHHHHHHHh-CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007106 118 GISKLFPIQKAVLEPAM-QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~-~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
.+..|.|+|++-+...+ ++..+++..++|.|||+.++..+..... ....|||||. ++...|++.+..|
T Consensus 195 Lvs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyra----------EwplliVcPA-svrftWa~al~r~ 263 (689)
T KOG1000|consen 195 LVSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRA----------EWPLLIVCPA-SVRFTWAKALNRF 263 (689)
T ss_pred HHHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhh----------cCcEEEEecH-HHhHHHHHHHHHh
Confidence 44567899999887655 5677999999999999988644433322 3358999995 7888999999999
Q ss_pred CCCCcE-EEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCC
Q 007106 197 APSLDT-ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275 (618)
Q Consensus 197 ~~~~~~-~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~ 275 (618)
+|.+-. .++......- ..+.....|.|.+++++..+-.. +.-..+.+||+||.|.+.+. .....+.++..+..
T Consensus 264 lps~~pi~vv~~~~D~~---~~~~t~~~v~ivSye~ls~l~~~--l~~~~~~vvI~DEsH~Lk~s-ktkr~Ka~~dllk~ 337 (689)
T KOG1000|consen 264 LPSIHPIFVVDKSSDPL---PDVCTSNTVAIVSYEQLSLLHDI--LKKEKYRVVIFDESHMLKDS-KTKRTKAATDLLKV 337 (689)
T ss_pred cccccceEEEecccCCc---cccccCCeEEEEEHHHHHHHHHH--HhcccceEEEEechhhhhcc-chhhhhhhhhHHHH
Confidence 986543 2333222211 11122246899999998654332 33456899999999987664 34456666777767
Q ss_pred CCcEEEEEecCC----hH---------------HHHHHHHhccCCceEeecc--------------------------CC
Q 007106 276 NRQSMMFSATMP----PW---------------IRSLTNKYLKNPLTVDLVG--------------------------DS 310 (618)
Q Consensus 276 ~~~~l~lSAT~~----~~---------------~~~~~~~~l~~~~~i~~~~--------------------------~~ 310 (618)
-.++|++|.||. .+ ..++...|+.-. .+...- +.
T Consensus 338 akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k-~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dv 416 (689)
T KOG1000|consen 338 AKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGK-QVRFCFDYKGCTNLEELAALLFKRLMIRRLKADV 416 (689)
T ss_pred hhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCcc-ccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999982 11 112222221100 000000 00
Q ss_pred cccccCCeEEEEEe-------------------------------------ccCcchhHHHHHHHHH-----hccCCeEE
Q 007106 311 DQKLADGISLYSIA-------------------------------------TSMYEKPSIIGQLITE-----HAKGGKCI 348 (618)
Q Consensus 311 ~~~~~~~~~~~~~~-------------------------------------~~~~~k~~~l~~ll~~-----~~~~~~~l 348 (618)
-..++.......+. .....|...+.+.|.. ..+..+.+
T Consensus 417 L~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~Kfl 496 (689)
T KOG1000|consen 417 LKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFL 496 (689)
T ss_pred HhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEE
Confidence 00000000000000 0001122222333333 23467999
Q ss_pred EEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCC-ccE-EEEccccccCCCCCCccEEEEcCCCCChh
Q 007106 349 VFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR-FNI-LIATDVAARGLDVPNVDLIIHYELPNTSE 425 (618)
Q Consensus 349 Vf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~-~~v-LVaT~~~~~Gidi~~~~~VI~~~~p~~~~ 425 (618)
|||......+.+...+.+ ++...-|.|..++.+|+...+.|+..+ ..| +++..++.+|+++..++.|++...+|++-
T Consensus 497 VFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPg 576 (689)
T KOG1000|consen 497 VFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPG 576 (689)
T ss_pred EEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCc
Confidence 999999999999999965 488888999999999999999998654 444 55667899999999999999999999999
Q ss_pred HHHHhhhccCCCCCcceEEEEecch----hHHHHHHHHHHh
Q 007106 426 TFVHRTGRTGRAGKKGSAILIYTDQ----QARQVKSIERDV 462 (618)
Q Consensus 426 ~~~Qr~GR~gR~g~~g~~~~~~~~~----~~~~~~~l~~~l 462 (618)
-++|.--|++|.|++..+.+.|.-. |...+..+.+.|
T Consensus 577 vLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL 617 (689)
T KOG1000|consen 577 VLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKL 617 (689)
T ss_pred eEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHH
Confidence 9999999999999998888777532 333344454444
No 131
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=1.9e-19 Score=180.47 Aligned_cols=326 Identities=15% Similarity=0.130 Sum_probs=224.3
Q ss_pred HHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007106 114 LARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (618)
Q Consensus 114 l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l 193 (618)
++...-+....+|.++++.+.+++++++.-.|-+||.+++.+.....+... .....+++.|++++++...+.+
T Consensus 279 ~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~-------~~s~~~~~~~~~~~~~~~~~~~ 351 (1034)
T KOG4150|consen 279 LNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC-------HATNSLLPSEMVEHLRNGSKGQ 351 (1034)
T ss_pred HhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC-------cccceecchhHHHHhhccCCce
Confidence 344555678899999999999999999999999999999988887766542 2345789999999988655443
Q ss_pred HHhC---CCCc--EEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCC----CCccEEEEchhhhhccCCcH-
Q 007106 194 HESA---PSLD--TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNL----SEVQFVVLDEADQMLSVGFA- 263 (618)
Q Consensus 194 ~~~~---~~~~--~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l----~~~~~vViDEaH~~~~~~~~- 263 (618)
.-.. +..+ ++-.+.+.+........+.+.+++++.|+++......+.... -+..++++||+|.++-. +.
T Consensus 352 ~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~~ 430 (1034)
T KOG4150|consen 352 VVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TKA 430 (1034)
T ss_pred EEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hhh
Confidence 3221 1112 233344444344444555678999999999976665544433 34578999999976544 33
Q ss_pred ---HHHHHHHHhC-----CCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEE---eccCcchhH
Q 007106 264 ---EDVEVILERL-----PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI---ATSMYEKPS 332 (618)
Q Consensus 264 ---~~~~~il~~l-----~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~k~~ 332 (618)
.+++.+++.+ ..+.|++-.+||+...++.+...+-.+.......+.... -...+..... +....++..
T Consensus 431 ~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs-~~K~~V~WNP~~~P~~~~~~~~ 509 (1034)
T KOG4150|consen 431 LAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPS-SEKLFVLWNPSAPPTSKSEKSS 509 (1034)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCC-ccceEEEeCCCCCCcchhhhhh
Confidence 3334444333 247899999999988777666555444433322211111 1111111111 111112222
Q ss_pred HHH---HHH-HHhccCCeEEEEecchhHHHHHHHHHHcc---------CCccccccCCCHHHHHHHHHHHhcCCccEEEE
Q 007106 333 IIG---QLI-TEHAKGGKCIVFTQTKRDADRLAHAMAKS---------YNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399 (618)
Q Consensus 333 ~l~---~ll-~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVa 399 (618)
.+. .++ +-...+-++|.||+.++.|+.+....++- -.+..+.|+...++|++|+..+-.|+..-+||
T Consensus 510 ~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIa 589 (1034)
T KOG4150|consen 510 KVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIA 589 (1034)
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEe
Confidence 221 222 22234669999999999999887654331 13556789999999999999999999999999
Q ss_pred ccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEec
Q 007106 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448 (618)
Q Consensus 400 T~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~ 448 (618)
|++++-||||..++.|++...|.++.++.|..|||||..++..++.+..
T Consensus 590 TNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~ 638 (1034)
T KOG4150|consen 590 TNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAF 638 (1034)
T ss_pred cchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEe
Confidence 9999999999999999999999999999999999999998888776654
No 132
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.83 E-value=6.1e-19 Score=186.97 Aligned_cols=157 Identities=17% Similarity=0.210 Sum_probs=116.1
Q ss_pred CChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC-
Q 007106 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS- 199 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~- 199 (618)
.|-.||++.+..+-.+...+|+|||.+|||++...++ +.+++. .....+|+++||++|++|+...+...+..
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~i-EKVLRe------sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~ 583 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAI-EKVLRE------SDSDVVIYVAPTKALVNQVSANVYARFDTK 583 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHH-HHHHhh------cCCCEEEEecchHHHhhhhhHHHHHhhccC
Confidence 4778999999999999999999999999998764444 333332 33568999999999999999888776521
Q ss_pred --CcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHh---cCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCC
Q 007106 200 --LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR---NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274 (618)
Q Consensus 200 --~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~---~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~ 274 (618)
.+.+.+.+..+.+.+.. .-.|.|+|+-|+-+..++.. .....+++++||+||+|.+-++.-...++.++..+
T Consensus 584 t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li- 660 (1330)
T KOG0949|consen 584 TFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI- 660 (1330)
T ss_pred ccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc-
Confidence 12223333333222222 22589999999999888876 33457889999999999988776666666666655
Q ss_pred CCCcEEEEEecCCh
Q 007106 275 QNRQSMMFSATMPP 288 (618)
Q Consensus 275 ~~~~~l~lSAT~~~ 288 (618)
.|.+|++|||+-+
T Consensus 661 -~CP~L~LSATigN 673 (1330)
T KOG0949|consen 661 -PCPFLVLSATIGN 673 (1330)
T ss_pred -CCCeeEEecccCC
Confidence 5889999999853
No 133
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=6.1e-19 Score=191.95 Aligned_cols=123 Identities=24% Similarity=0.309 Sum_probs=105.8
Q ss_pred chhHHHHHHHHH-hccCCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccC
Q 007106 329 EKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406 (618)
Q Consensus 329 ~k~~~l~~ll~~-~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~G 406 (618)
+|...+...+.. +..+.++||||++++.++.|+..|.+ .+++..+|+ .+.+|+..+..|..+...|+|||++++||
T Consensus 582 eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRG 659 (1025)
T PRK12900 582 EKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRG 659 (1025)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCC
Confidence 355555555543 45688999999999999999999965 489999997 58899999999999999999999999999
Q ss_pred CCCC---Ccc-----EEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHH
Q 007106 407 LDVP---NVD-----LIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453 (618)
Q Consensus 407 idi~---~~~-----~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 453 (618)
+||+ .|. +||..+.|.+...|.|++||+||.|.+|.+.+|++.+|.-
T Consensus 660 tDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 660 TDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred CCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 9999 443 4588899999999999999999999999999999876643
No 134
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=2.6e-18 Score=186.52 Aligned_cols=314 Identities=20% Similarity=0.230 Sum_probs=195.4
Q ss_pred ChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC--C
Q 007106 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--S 199 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~--~ 199 (618)
+++.|.-. .+.-.+.-|..+.||+|||+++.+|++...+. +..+.||+|+..||.+.++++..++. +
T Consensus 83 ~ydVQliG--g~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~---------G~~VhvvT~ndyLA~RD~e~m~~l~~~lG 151 (913)
T PRK13103 83 HFDVQLIG--GMTLHEGKIAEMRTGEGKTLVGTLAVYLNALS---------GKGVHVVTVNDYLARRDANWMRPLYEFLG 151 (913)
T ss_pred cchhHHHh--hhHhccCccccccCCCCChHHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 55566533 33334568899999999999999999877665 78899999999999999999999886 4
Q ss_pred CcEEEEEcCcchhhhhHHhhcCCCEEEEChHHH-HHHHHhcCC------CCCCccEEEEchhhhhccC------------
Q 007106 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNAL------NLSEVQFVVLDEADQMLSV------------ 260 (618)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l-~~~l~~~~~------~l~~~~~vViDEaH~~~~~------------ 260 (618)
+.+.++.+..+...+.... .++|+++|+..| .++|..... ..+.+.++||||+|.++=.
T Consensus 152 l~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~ 229 (913)
T PRK13103 152 LSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQA 229 (913)
T ss_pred CEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCC
Confidence 5667776666555444433 389999999987 444443211 2378999999999987511
Q ss_pred ----CcHHHHHHHHHhCCC-------------------CCcEEEEEecCChHHHHH------------------------
Q 007106 261 ----GFAEDVEVILERLPQ-------------------NRQSMMFSATMPPWIRSL------------------------ 293 (618)
Q Consensus 261 ----~~~~~~~~il~~l~~-------------------~~~~l~lSAT~~~~~~~~------------------------ 293 (618)
.....+..++..+.. ..+.+.+|-.-...+..+
T Consensus 230 ~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~ 309 (913)
T PRK13103 230 EDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTH 309 (913)
T ss_pred ccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHH
Confidence 112223333333311 111122221100000000
Q ss_pred -----HHH-hcc-CC------ceEeeccCC--------------------------------------------------
Q 007106 294 -----TNK-YLK-NP------LTVDLVGDS-------------------------------------------------- 310 (618)
Q Consensus 294 -----~~~-~l~-~~------~~i~~~~~~-------------------------------------------------- 310 (618)
... ++. +. -.+.+++..
T Consensus 310 i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsG 389 (913)
T PRK13103 310 VYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSG 389 (913)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhcc
Confidence 000 000 00 001111100
Q ss_pred --------------------------cccccCCeEEEEEeccCcchhHH-HHHHHHHhccCCeEEEEecchhHHHHHHHH
Q 007106 311 --------------------------DQKLADGISLYSIATSMYEKPSI-IGQLITEHAKGGKCIVFTQTKRDADRLAHA 363 (618)
Q Consensus 311 --------------------------~~~~~~~~~~~~~~~~~~~k~~~-l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~ 363 (618)
.+........ .+..+..+|... +.++...+..+.+|||-+.+++..+.+...
T Consensus 390 MTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d-~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~ 468 (913)
T PRK13103 390 MTGTADTEAFEFRQIYGLDVVVIPPNKPLARKDFND-LVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNL 468 (913)
T ss_pred CCCCCHHHHHHHHHHhCCCEEECCCCCCcccccCCC-eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHH
Confidence 0000000000 011222223333 344444566799999999999999999999
Q ss_pred HHcc-CCccccccCCCHHHHHHHHHHHhcC-CccEEEEccccccCCCCC-------------------------------
Q 007106 364 MAKS-YNCEPLHGDISQSQRERTLSAFRDG-RFNILIATDVAARGLDVP------------------------------- 410 (618)
Q Consensus 364 L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g-~~~vLVaT~~~~~Gidi~------------------------------- 410 (618)
|.+. +++.+++......|-+ |+. +.| .-.|.|||++++||.||.
T Consensus 469 L~~~gi~h~VLNAk~~~~EA~-IIa--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (913)
T PRK13103 469 LKKEGIEHKVLNAKYHEKEAE-IIA--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRH 545 (913)
T ss_pred HHHcCCcHHHhccccchhHHH-HHH--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHH
Confidence 9764 8888888775433322 222 345 356999999999999994
Q ss_pred ------CccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhH
Q 007106 411 ------NVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452 (618)
Q Consensus 411 ------~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 452 (618)
.=-+||-...+.|..--.|..||+||.|.+|.+-+|++-+|.
T Consensus 546 e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 546 QQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 112788888888888889999999999999999888876543
No 135
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.78 E-value=1.6e-18 Score=184.88 Aligned_cols=319 Identities=18% Similarity=0.246 Sum_probs=211.4
Q ss_pred CChHHHHHHHHHHhC----CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007106 121 KLFPIQKAVLEPAMQ----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~----~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
++.+||.+.+.++.+ +-+.|+..+||.|||+.. +.++..++.++.. ....||+||+..|. .|..++.+|
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQt-IsLitYLmE~K~~-----~GP~LvivPlstL~-NW~~Ef~kW 466 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQT-ISLITYLMEHKQM-----QGPFLIIVPLSTLV-NWSSEFPKW 466 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHH-HHHHHHHHHHccc-----CCCeEEeccccccC-Cchhhcccc
Confidence 689999999988764 356899999999999865 4555566554433 44579999997765 599999999
Q ss_pred CCCCcEEEEEcCcchhhh--hHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCC
Q 007106 197 APSLDTICVYGGTPISHQ--MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274 (618)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~--~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~ 274 (618)
.|.+..+...|....... .......++||++|++.+.. ....+.--+|.++||||.|+|.+. ...+...+..--
T Consensus 467 aPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~L~t~y 542 (1157)
T KOG0386|consen 467 APSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNA--ICKLTDTLNTHY 542 (1157)
T ss_pred ccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccch--hhHHHHHhhccc
Confidence 988776665554432221 11222469999999999875 222233457889999999998763 233333333222
Q ss_pred CCCcEEEEEecCCh-HHHHHHHH-----------------hcc-------------------------------------
Q 007106 275 QNRQSMMFSATMPP-WIRSLTNK-----------------YLK------------------------------------- 299 (618)
Q Consensus 275 ~~~~~l~lSAT~~~-~~~~~~~~-----------------~l~------------------------------------- 299 (618)
.....+++|.||.. .+.+++.. |+.
T Consensus 543 ~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlK 622 (1157)
T KOG0386|consen 543 RAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLK 622 (1157)
T ss_pred cchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhh
Confidence 23344555666420 00000000 000
Q ss_pred ------CCceEe------------------------eccC----C-----------------ccccc----CCeEEEE--
Q 007106 300 ------NPLTVD------------------------LVGD----S-----------------DQKLA----DGISLYS-- 322 (618)
Q Consensus 300 ------~~~~i~------------------------~~~~----~-----------------~~~~~----~~~~~~~-- 322 (618)
.|..+. .+.. . ...+. ..+....
T Consensus 623 keVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~ 702 (1157)
T KOG0386|consen 623 KEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDI 702 (1157)
T ss_pred HHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccCh
Confidence 000000 0000 0 00000 0000000
Q ss_pred -EeccCcchhHHHHHHHHHhcc-CCeEEEEecchhHHHHHHHHHH-ccCCccccccCCCHHHHHHHHHHHhcCC---ccE
Q 007106 323 -IATSMYEKPSIIGQLITEHAK-GGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR---FNI 396 (618)
Q Consensus 323 -~~~~~~~k~~~l~~ll~~~~~-~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~lhg~~~~~~r~~i~~~f~~g~---~~v 396 (618)
......-|..++..++-.+.. ++++|.||....-.+.+..+|. +.+....+.|....++|-..++.|+.-. ..+
T Consensus 703 ~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~F 782 (1157)
T KOG0386|consen 703 KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIF 782 (1157)
T ss_pred hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeee
Confidence 011122355566666655533 8899999999999999999995 4588888999999999999999998754 557
Q ss_pred EEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecch
Q 007106 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 397 LVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
|++|.+...|+|++.++.||+||..|++....|+.-|++|.|++..+-++....
T Consensus 783 llstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~t 836 (1157)
T KOG0386|consen 783 LLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLIT 836 (1157)
T ss_pred eeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeeh
Confidence 889999999999999999999999999999999999999999887777766544
No 136
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.77 E-value=1.5e-16 Score=178.63 Aligned_cols=117 Identities=17% Similarity=0.153 Sum_probs=80.2
Q ss_pred cCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCC--ccEEEEcC
Q 007106 343 KGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN--VDLIIHYE 419 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~--~~~VI~~~ 419 (618)
.++++||++++.+..+.+++.|... +.+ ...+... .+.+++++|++++..||++|..+.+|||+|. ...||+..
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~k 722 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITR 722 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEec
Confidence 4679999999999999999998643 222 3334222 3566899999988899999999999999973 55667666
Q ss_pred CCC----Ch--------------------------hHHHHhhhccCCCCCcceEEEEecch--hHHHHHHHHHHh
Q 007106 420 LPN----TS--------------------------ETFVHRTGRTGRAGKKGSAILIYTDQ--QARQVKSIERDV 462 (618)
Q Consensus 420 ~p~----~~--------------------------~~~~Qr~GR~gR~g~~g~~~~~~~~~--~~~~~~~l~~~l 462 (618)
.|. ++ ..+.|.+||+-|...+.-+++++++. ...+-+.+.+.|
T Consensus 723 LPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k~Yg~~~l~sL 797 (820)
T PRK07246 723 LPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTKSYGKQILASL 797 (820)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccccHHHHHHHHhC
Confidence 553 21 12459999999986544455555543 223334444444
No 137
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.76 E-value=1.3e-17 Score=167.77 Aligned_cols=282 Identities=19% Similarity=0.219 Sum_probs=185.2
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhH
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~ 216 (618)
+-++-++||.||||.-+ ++++.. ....++.-|.+.||.++++.+.+. ++.+-+++|.........
T Consensus 192 kIi~H~GPTNSGKTy~A----Lqrl~~---------aksGvycGPLrLLA~EV~~r~na~--gipCdL~TGeE~~~~~~~ 256 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRA----LQRLKS---------AKSGVYCGPLRLLAHEVYDRLNAL--GIPCDLLTGEERRFVLDN 256 (700)
T ss_pred eEEEEeCCCCCchhHHH----HHHHhh---------hccceecchHHHHHHHHHHHhhhc--CCCccccccceeeecCCC
Confidence 33677999999999754 444433 345799999999999999999887 466666666543222111
Q ss_pred HhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhC-CCCCcEEEEEecCChHHHHHHH
Q 007106 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMMFSATMPPWIRSLTN 295 (618)
Q Consensus 217 ~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l-~~~~~~l~lSAT~~~~~~~~~~ 295 (618)
...+..+-||.++..- -..+++.||||+++|.+...+-.+.+.+--+ ....++.. .+.+..+..
T Consensus 257 --~~~a~hvScTVEM~sv--------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-----epsvldlV~ 321 (700)
T KOG0953|consen 257 --GNPAQHVSCTVEMVSV--------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-----EPSVLDLVR 321 (700)
T ss_pred --CCcccceEEEEEEeec--------CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC-----CchHHHHHH
Confidence 1236778888665531 3468899999999998877655554443322 22333222 122333333
Q ss_pred Hhcc---CCceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc--CCc
Q 007106 296 KYLK---NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS--YNC 370 (618)
Q Consensus 296 ~~l~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~ 370 (618)
..+. +...+...+.. ... ...+.+..-+.++.++..++ |.+++.+..+...+.+. ..|
T Consensus 322 ~i~k~TGd~vev~~YeRl--------------~pL-~v~~~~~~sl~nlk~GDCvV--~FSkk~I~~~k~kIE~~g~~k~ 384 (700)
T KOG0953|consen 322 KILKMTGDDVEVREYERL--------------SPL-VVEETALGSLSNLKPGDCVV--AFSKKDIFTVKKKIEKAGNHKC 384 (700)
T ss_pred HHHhhcCCeeEEEeeccc--------------Ccc-eehhhhhhhhccCCCCCeEE--EeehhhHHHHHHHHHHhcCcce
Confidence 3322 22222221111 111 11123444455666666554 44788898888888654 569
Q ss_pred cccccCCCHHHHHHHHHHHhc--CCccEEEEccccccCCCCCCccEEEEcCCC---------CChhHHHHhhhccCCCC-
Q 007106 371 EPLHGDISQSQRERTLSAFRD--GRFNILIATDVAARGLDVPNVDLIIHYELP---------NTSETFVHRTGRTGRAG- 438 (618)
Q Consensus 371 ~~lhg~~~~~~r~~i~~~f~~--g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p---------~~~~~~~Qr~GR~gR~g- 438 (618)
++++|.++++.|..--..|++ ++++||||||++++|+|+ +++.||++++- ....+..|..|||||.+
T Consensus 385 aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s 463 (700)
T KOG0953|consen 385 AVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGS 463 (700)
T ss_pred EEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhccccccc
Confidence 999999999999999999987 889999999999999999 89999988764 36678899999999976
Q ss_pred --CcceEEEEecchhHHHHHHHHHHhCCCcccCC
Q 007106 439 --KKGSAILIYTDQQARQVKSIERDVGCRFTQLP 470 (618)
Q Consensus 439 --~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 470 (618)
..|.+.++..+ .+..+.+.++..++++.
T Consensus 464 ~~~~G~vTtl~~e----DL~~L~~~l~~p~epi~ 493 (700)
T KOG0953|consen 464 KYPQGEVTTLHSE----DLKLLKRILKRPVEPIK 493 (700)
T ss_pred CCcCceEEEeeHh----hHHHHHHHHhCCchHHH
Confidence 35666555543 34555555555544443
No 138
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.75 E-value=1.1e-15 Score=163.93 Aligned_cols=106 Identities=16% Similarity=0.126 Sum_probs=77.5
Q ss_pred cCCeEEEEecchhHHHHHHHHHHccCCcccc-ccCCCHHHHHHHHHHHhcC----CccEEEEccccccCCCC--------
Q 007106 343 KGGKCIVFTQTKRDADRLAHAMAKSYNCEPL-HGDISQSQRERTLSAFRDG----RFNILIATDVAARGLDV-------- 409 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~l-hg~~~~~~r~~i~~~f~~g----~~~vLVaT~~~~~Gidi-------- 409 (618)
.++.+||.+.+...++.+++.|...+...++ .|+.+ .+..++++|++. ...||++|..+.+|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 3679999999999999999999776544333 44432 456688888874 78999999999999999
Q ss_pred --CCccEEEEcCCCCCh-------------------------hHHHHhhhccCCCCCc--ceEEEEecch
Q 007106 410 --PNVDLIIHYELPNTS-------------------------ETFVHRTGRTGRAGKK--GSAILIYTDQ 450 (618)
Q Consensus 410 --~~~~~VI~~~~p~~~-------------------------~~~~Qr~GR~gR~g~~--g~~~~~~~~~ 450 (618)
..++.||+...|..+ ..+.|-+||.-|...+ --+++++++.
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 238899987777422 1246899999997654 3344444433
No 139
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.74 E-value=1.1e-15 Score=174.99 Aligned_cols=108 Identities=18% Similarity=0.263 Sum_probs=80.5
Q ss_pred cCCeEEEEecchhHHHHHHHHHHccCC---ccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCC--ccEEEE
Q 007106 343 KGGKCIVFTQTKRDADRLAHAMAKSYN---CEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN--VDLIIH 417 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~~~~---~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~--~~~VI~ 417 (618)
.++++||++++.+..+.+++.|..... ..++.-+++...|.++++.|++++..||++|..+.+|||+|+ +..||+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 356999999999999999999965422 223333444456788999999988889999999999999997 578888
Q ss_pred cCCCC-Ch-----------------------------hHHHHhhhccCCCCCcceEEEEecch
Q 007106 418 YELPN-TS-----------------------------ETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 418 ~~~p~-~~-----------------------------~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
...|. ++ ..+.|.+||+-|..++.-+++++++.
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 77664 12 12359999999986554455555543
No 140
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.74 E-value=2.1e-16 Score=169.80 Aligned_cols=117 Identities=20% Similarity=0.356 Sum_probs=98.7
Q ss_pred HHHHHHHHHh-ccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCC--ccEEEEccccccCC
Q 007106 332 SIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGR--FNILIATDVAARGL 407 (618)
Q Consensus 332 ~~l~~ll~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~--~~vLVaT~~~~~Gi 407 (618)
..|..+++++ ..++++|||++..+..+.|..+|.-+ +...-+.|....++|+..+++|+... +.+|++|.....||
T Consensus 1263 QtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGi 1342 (1958)
T KOG0391|consen 1263 QTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGI 1342 (1958)
T ss_pred HHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcccc
Confidence 3343444444 34789999999999999999999754 67778899999999999999999876 56788999999999
Q ss_pred CCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEec
Q 007106 408 DVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448 (618)
Q Consensus 408 di~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~ 448 (618)
|+..++.||+||.+||+..-.|.--|++|.|+...+-++-.
T Consensus 1343 NLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRL 1383 (1958)
T KOG0391|consen 1343 NLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRL 1383 (1958)
T ss_pred ccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEe
Confidence 99999999999999999999999999999998766655543
No 141
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.72 E-value=3.6e-16 Score=160.79 Aligned_cols=118 Identities=17% Similarity=0.344 Sum_probs=101.3
Q ss_pred chhHHHHHHHHHhc-cCCeEEEEecchhHHHHHHHHHH-ccCCccccccCCCHHHHHHHHHHHhcCC-ccEEEEcccccc
Q 007106 329 EKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR-FNILIATDVAAR 405 (618)
Q Consensus 329 ~k~~~l~~ll~~~~-~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~lhg~~~~~~r~~i~~~f~~g~-~~vLVaT~~~~~ 405 (618)
.|...+..++..+. .++++|+|++..+.++.+.++|. +.+...-+.|.....+|..++.+|+..+ ..+|++|.+.+-
T Consensus 1028 gKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGL 1107 (1185)
T KOG0388|consen 1028 GKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGL 1107 (1185)
T ss_pred cceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcc
Confidence 35556666666553 47899999999999999999995 4588888999999999999999999855 456889999999
Q ss_pred CCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEE
Q 007106 406 GLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446 (618)
Q Consensus 406 Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~ 446 (618)
|||+..++.||+||..|++..-.|.+-||+|.|+...+.++
T Consensus 1108 GINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvy 1148 (1185)
T KOG0388|consen 1108 GINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVY 1148 (1185)
T ss_pred cccccccceEEEecCCCCcchhhHHHHHHHhccCccceeee
Confidence 99999999999999999999999999999999976654443
No 142
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.72 E-value=1.5e-16 Score=148.63 Aligned_cols=150 Identities=24% Similarity=0.237 Sum_probs=102.9
Q ss_pred CChHHHHHHHHHHhC-------CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007106 121 KLFPIQKAVLEPAMQ-------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~-------~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l 193 (618)
+|+++|.+++..+.. .+++++.+|||+|||.+++..+.... . +++|+||+..|++|+.+.+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-----------~-~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-----------R-KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-----------C-EEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-----------c-ceeEecCHHHHHHHHHHHH
Confidence 589999999998874 57899999999999998875555443 1 7999999999999999999
Q ss_pred HHhCCCCcEEEEE-------------cCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcC-----------CCCCCccEE
Q 007106 194 HESAPSLDTICVY-------------GGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA-----------LNLSEVQFV 249 (618)
Q Consensus 194 ~~~~~~~~~~~~~-------------g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~-----------~~l~~~~~v 249 (618)
..+.......... ................+++++|.+.|........ .....+++|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 150 (184)
T PF04851_consen 71 DDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLV 150 (184)
T ss_dssp HHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEE
T ss_pred HHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEE
Confidence 7665433222111 1111111222223457899999999987765421 123467899
Q ss_pred EEchhhhhccCCcHHH-HHHHHHhCCCCCcEEEEEecCCh
Q 007106 250 VLDEADQMLSVGFAED-VEVILERLPQNRQSMMFSATMPP 288 (618)
Q Consensus 250 ViDEaH~~~~~~~~~~-~~~il~~l~~~~~~l~lSAT~~~ 288 (618)
|+||||++.. .. +..++. .+...+|.|||||.+
T Consensus 151 I~DEaH~~~~----~~~~~~i~~--~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 151 IIDEAHHYPS----DSSYREIIE--FKAAFILGLTATPFR 184 (184)
T ss_dssp EEETGGCTHH----HHHHHHHHH--SSCCEEEEEESS-S-
T ss_pred EEehhhhcCC----HHHHHHHHc--CCCCeEEEEEeCccC
Confidence 9999998743 33 566666 457779999999863
No 143
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=5.6e-16 Score=166.71 Aligned_cols=315 Identities=17% Similarity=0.202 Sum_probs=192.8
Q ss_pred CChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC--
Q 007106 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~-- 198 (618)
.+++.|.-.--.+.. ..|..+.||-|||+++.+|++-..+. +..|-||+...-||..=++++..++.
T Consensus 78 r~ydVQliGglvLh~--G~IAEMkTGEGKTLvAtLpayLnAL~---------GkgVhVVTvNdYLA~RDae~mg~vy~fL 146 (925)
T PRK12903 78 RPYDVQIIGGIILDL--GSVAEMKTGEGKTITSIAPVYLNALT---------GKGVIVSTVNEYLAERDAEEMGKVFNFL 146 (925)
T ss_pred CcCchHHHHHHHHhc--CCeeeecCCCCccHHHHHHHHHHHhc---------CCceEEEecchhhhhhhHHHHHHHHHHh
Confidence 367777655544444 46899999999999999988765544 66788888889999877777666543
Q ss_pred CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHH-HHHHHhcC------CCCCCccEEEEchhhhhccC-----------
Q 007106 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQMLSV----------- 260 (618)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l-~~~l~~~~------~~l~~~~~vViDEaH~~~~~----------- 260 (618)
++.+.++........+. ....|+|+++|...| +++|.... ...+.+.+.||||+|.++=.
T Consensus 147 GLsvG~i~~~~~~~~rr--~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~ 224 (925)
T PRK12903 147 GLSVGINKANMDPNLKR--EAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGG 224 (925)
T ss_pred CCceeeeCCCCChHHHH--HhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCC
Confidence 45666655544443333 334589999999988 55555432 12466889999999987411
Q ss_pred -----CcHHHHHHHHHhCCC-------CCcEEEEEecCChHHHHH-----------------HHH------hcc-CC---
Q 007106 261 -----GFAEDVEVILERLPQ-------NRQSMMFSATMPPWIRSL-----------------TNK------YLK-NP--- 301 (618)
Q Consensus 261 -----~~~~~~~~il~~l~~-------~~~~l~lSAT~~~~~~~~-----------------~~~------~l~-~~--- 301 (618)
.+...+..++..+.. ..+.+.+|..-...+..+ +.. ++. +.
T Consensus 225 ~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYi 304 (925)
T PRK12903 225 QSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYI 304 (925)
T ss_pred CccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceE
Confidence 122333334443422 112233332110011110 000 000 00
Q ss_pred ---ceEeeccCC--------------------------------------------------------------------
Q 007106 302 ---LTVDLVGDS-------------------------------------------------------------------- 310 (618)
Q Consensus 302 ---~~i~~~~~~-------------------------------------------------------------------- 310 (618)
-.+.+++..
T Consensus 305 V~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l 384 (925)
T PRK12903 305 VRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNM 384 (925)
T ss_pred EECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCC
Confidence 000000000
Q ss_pred -cccccCCeEEE------EEeccCcchhHHH-HHHHHHhccCCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHH
Q 007106 311 -DQKLADGISLY------SIATSMYEKPSII-GQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQ 381 (618)
Q Consensus 311 -~~~~~~~~~~~------~~~~~~~~k~~~l-~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~ 381 (618)
...++.+.+.. .+..+...|...+ .++.+.+.++.++||.|.+++.++.+.+.|.+ .+++.++++... +
T Consensus 385 ~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e 462 (925)
T PRK12903 385 RVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--A 462 (925)
T ss_pred CEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--h
Confidence 00001111100 1112223344333 34444567789999999999999999999976 488888888743 3
Q ss_pred HHHHHHHHhcCC-ccEEEEccccccCCCCCCcc--------EEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchh
Q 007106 382 RERTLSAFRDGR-FNILIATDVAARGLDVPNVD--------LIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451 (618)
Q Consensus 382 r~~i~~~f~~g~-~~vLVaT~~~~~Gidi~~~~--------~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 451 (618)
++.-+-. ..|+ -.|.|||++++||.||.--. |||....|.|..--.|..||+||.|.+|.+-.|++-+|
T Consensus 463 ~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 463 REAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred hHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecch
Confidence 3322222 4553 67999999999999996322 89998899888878899999999999999888877554
No 144
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.71 E-value=3.3e-16 Score=139.35 Aligned_cols=143 Identities=42% Similarity=0.586 Sum_probs=109.4
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC-CCcEEEEEcCcchhhhh
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQM 215 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~-~~~~~~~~g~~~~~~~~ 215 (618)
+++++.++||+|||.+++..+...... ....+++|++|++.++.|+.+.+..+.. ...+..+.+........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-------LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-------ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH
Confidence 368999999999999988887776543 2256899999999999999999988765 45566666665555444
Q ss_pred HHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecC
Q 007106 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (618)
Q Consensus 216 ~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~ 286 (618)
.......+|+++|++.+...+.........+++|||||+|.+....................+++++||||
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 44456789999999999888877655566899999999999876654443323344456788999999996
No 145
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.70 E-value=1.7e-15 Score=164.11 Aligned_cols=124 Identities=19% Similarity=0.232 Sum_probs=89.3
Q ss_pred ChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC--C
Q 007106 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--S 199 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~--~ 199 (618)
+++.|.-.. +.-.+..|+.+.||.|||+++.+|++-..+. +..|-||+++..||.+-++++..++. +
T Consensus 77 ~ydvQlig~--l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~---------G~~VhVvT~NdyLA~RD~e~m~pvy~~LG 145 (870)
T CHL00122 77 HFDVQLIGG--LVLNDGKIAEMKTGEGKTLVATLPAYLNALT---------GKGVHIVTVNDYLAKRDQEWMGQIYRFLG 145 (870)
T ss_pred CCchHhhhh--HhhcCCccccccCCCCchHHHHHHHHHHHhc---------CCceEEEeCCHHHHHHHHHHHHHHHHHcC
Confidence 666775544 3334578999999999999999998655443 67899999999999998888877654 4
Q ss_pred CcEEEEEcCcchhhhhHHhhcCCCEEEEChHHH-HHHHHhcC------CCCCCccEEEEchhhhhc
Q 007106 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQML 258 (618)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l-~~~l~~~~------~~l~~~~~vViDEaH~~~ 258 (618)
+.+.++..+.+...+. ....++|+++|...| .++|.... ...+.+.++||||+|.++
T Consensus 146 Lsvg~i~~~~~~~err--~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 146 LTVGLIQEGMSSEERK--KNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred CceeeeCCCCChHHHH--HhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 6666666555544433 334579999999876 34444321 124568899999999874
No 146
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.69 E-value=2.6e-16 Score=138.27 Aligned_cols=118 Identities=47% Similarity=0.821 Sum_probs=107.0
Q ss_pred chhHHHHHHHHHhc-cCCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccC
Q 007106 329 EKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406 (618)
Q Consensus 329 ~k~~~l~~ll~~~~-~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~G 406 (618)
.+...+..++.... .+.++||||++...++.+++.|.+ ...+..+|+.++..+|..+++.|+++...||++|+++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 56666777776654 567999999999999999999976 4788999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEE
Q 007106 407 LDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446 (618)
Q Consensus 407 idi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~ 446 (618)
+|+|.+++||++++|++...+.|++||++|.++.+.|+++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998887764
No 147
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.67 E-value=1.6e-15 Score=156.41 Aligned_cols=117 Identities=14% Similarity=0.216 Sum_probs=93.2
Q ss_pred hHHHHHHHHHh--ccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhc--C-CccEEEEccccc
Q 007106 331 PSIIGQLITEH--AKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRD--G-RFNILIATDVAA 404 (618)
Q Consensus 331 ~~~l~~ll~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~--g-~~~vLVaT~~~~ 404 (618)
.....++++.. ....+++|+.+.......+...|.+. +....+||.....+|+.+++.|+. + ....|++-.+.+
T Consensus 731 i~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGG 810 (901)
T KOG4439|consen 731 IAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGG 810 (901)
T ss_pred HHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCc
Confidence 33344444443 23567888877777778888888665 778889999999999999999964 3 334466667889
Q ss_pred cCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEe
Q 007106 405 RGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447 (618)
Q Consensus 405 ~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~ 447 (618)
.|||+..++|+|.+|+.|++.--.|..-|+-|.|++..+++.-
T Consensus 811 VGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR 853 (901)
T KOG4439|consen 811 VGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHR 853 (901)
T ss_pred ceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEE
Confidence 9999999999999999999999999999999999988887653
No 148
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.65 E-value=1.7e-14 Score=158.40 Aligned_cols=309 Identities=19% Similarity=0.173 Sum_probs=176.5
Q ss_pred CCChHHHHHHHHHHhCC------CC--EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHH
Q 007106 120 SKLFPIQKAVLEPAMQG------RD--MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~------~~--~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~ 191 (618)
..-..+|.+|++.+..- +. +|--|.||||||++=.-. +..+. +...+++..|..-.|.|.-|.-+
T Consensus 407 ~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARI-myaLs------d~~~g~RfsiALGLRTLTLQTGd 479 (1110)
T TIGR02562 407 HPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARA-MYALR------DDKQGARFAIALGLRSLTLQTGH 479 (1110)
T ss_pred CCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHH-HHHhC------CCCCCceEEEEccccceeccchH
Confidence 34567999999877641 11 677899999999853222 22221 12346677777777788777777
Q ss_pred HHHHhCC--CCcEEEEEcCcchhhh-------------------------------------------hHHhh-------
Q 007106 192 EFHESAP--SLDTICVYGGTPISHQ-------------------------------------------MRALD------- 219 (618)
Q Consensus 192 ~l~~~~~--~~~~~~~~g~~~~~~~-------------------------------------------~~~l~------- 219 (618)
.+++.+. +-...++.|+....+- ...+.
T Consensus 480 a~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~r 559 (1110)
T TIGR02562 480 ALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKT 559 (1110)
T ss_pred HHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhh
Confidence 7766432 2223333333111000 00000
Q ss_pred -cCCCEEEEChHHHHHHHHhc---CCCCC----CccEEEEchhhhhccCCcHHHHHHHHHhCC-CCCcEEEEEecCChHH
Q 007106 220 -YGVDAVVGTPGRVIDLIKRN---ALNLS----EVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSMMFSATMPPWI 290 (618)
Q Consensus 220 -~~~~Ilv~T~~~l~~~l~~~---~~~l~----~~~~vViDEaH~~~~~~~~~~~~~il~~l~-~~~~~l~lSAT~~~~~ 290 (618)
-..+|+|||++.++...... ...+. .-+.|||||+|.+... ....+..++..+. -...+|+||||+|+.+
T Consensus 560 ll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~L~rlL~w~~~lG~~VlLmSATLP~~l 638 (1110)
T TIGR02562 560 LLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPALLRLVQLAGLLGSRVLLSSATLPPAL 638 (1110)
T ss_pred hhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHHHHHHHHHHHHcCCCEEEEeCCCCHHH
Confidence 02689999999998776331 11111 1368999999975332 2334444444332 3678999999999987
Q ss_pred HHHHHHhc-----------cC---CceEee--ccCCcc------------------------cccC--CeEE-EEEeccC
Q 007106 291 RSLTNKYL-----------KN---PLTVDL--VGDSDQ------------------------KLAD--GISL-YSIATSM 327 (618)
Q Consensus 291 ~~~~~~~l-----------~~---~~~i~~--~~~~~~------------------------~~~~--~~~~-~~~~~~~ 327 (618)
...+...+ .. +..+.. +.+... .+.. .... ..+++..
T Consensus 639 ~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~ 718 (1110)
T TIGR02562 639 VKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSS 718 (1110)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCC
Confidence 66554432 11 111111 000000 0000 0000 1111111
Q ss_pred cc-----hhHHHHH-----HHHHhc--------cCCeE---EEEecchhHHHHHHHHHHcc-------CCccccccCCCH
Q 007106 328 YE-----KPSIIGQ-----LITEHA--------KGGKC---IVFTQTKRDADRLAHAMAKS-------YNCEPLHGDISQ 379 (618)
Q Consensus 328 ~~-----k~~~l~~-----ll~~~~--------~~~~~---lVf~~~~~~~~~l~~~L~~~-------~~~~~lhg~~~~ 379 (618)
.. ....+.. ++..+. .+++| ||-+.+++.+-.++..|... +.+.++|+..+.
T Consensus 719 ~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l 798 (1110)
T TIGR02562 719 LPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPL 798 (1110)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChH
Confidence 11 1111111 111111 12222 67788888888888877542 336778999988
Q ss_pred HHHHHHHHHH----------------------hc----CCccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhc
Q 007106 380 SQRERTLSAF----------------------RD----GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGR 433 (618)
Q Consensus 380 ~~r~~i~~~f----------------------~~----g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR 433 (618)
..|..+++.+ .+ +...|+|+|+++|.|+|+ +.+++|. .|.++..++|++||
T Consensus 799 ~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR 875 (1110)
T TIGR02562 799 LLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGR 875 (1110)
T ss_pred HHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhc
Confidence 8887777554 11 356899999999999999 6777765 45677888999999
Q ss_pred cCCCCC
Q 007106 434 TGRAGK 439 (618)
Q Consensus 434 ~gR~g~ 439 (618)
+.|.+.
T Consensus 876 ~~R~~~ 881 (1110)
T TIGR02562 876 VNRHRL 881 (1110)
T ss_pred cccccc
Confidence 999754
No 149
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.64 E-value=2.7e-14 Score=155.56 Aligned_cols=283 Identities=11% Similarity=0.092 Sum_probs=168.1
Q ss_pred EccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHH----
Q 007106 142 RARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA---- 217 (618)
Q Consensus 142 ~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~---- 217 (618)
.+-+|||||.+|+-.+-..+.. +.++||++|...|+.|+.+.|++.++...+.++|+..+..++.+.
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~~---------Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~ 236 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLRA---------GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAV 236 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHHc---------CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHH
Confidence 3336999999998777766644 778999999999999999999999875678888887776554333
Q ss_pred hhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhc--cCC---c-HHHHHHHHHhCCCCCcEEEEEecCChHHH
Q 007106 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML--SVG---F-AEDVEVILERLPQNRQSMMFSATMPPWIR 291 (618)
Q Consensus 218 l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~--~~~---~-~~~~~~il~~l~~~~~~l~lSAT~~~~~~ 291 (618)
....+.|||+|...++ ..+.++.+|||||-|.-. +.. + ...+. ++.....++.+|+.|||++-+..
T Consensus 237 ~~G~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA-~~Ra~~~~~~lvLgSaTPSles~ 308 (665)
T PRK14873 237 LRGQARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVA-LLRAHQHGCALLIGGHARTAEAQ 308 (665)
T ss_pred hCCCCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHH-HHHHHHcCCcEEEECCCCCHHHH
Confidence 3344899999955443 347899999999999432 211 1 12222 22223357889999999987655
Q ss_pred HHHHHhccCCceEeeccCCcccccCCeEEEEEec-----cC-c---ch-hHHHHHHHHHhccCCeEEEEecchhHHHH--
Q 007106 292 SLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT-----SM-Y---EK-PSIIGQLITEHAKGGKCIVFTQTKRDADR-- 359 (618)
Q Consensus 292 ~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~-~---~k-~~~l~~ll~~~~~~~~~lVf~~~~~~~~~-- 359 (618)
.....-. ...+.............+....... +. . .. ..++..+-+.+.++ ++|||.|.+-.+-.
T Consensus 309 ~~~~~g~--~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~lnRrGyap~l~ 385 (665)
T PRK14873 309 ALVESGW--AHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVPRRGYVPSLA 385 (665)
T ss_pred HHHhcCc--ceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEecCCCCCCeeE
Confidence 4332211 0001000000001111122211110 00 0 01 12334444444556 99999998755433
Q ss_pred ---------------------------------------------------------HHHHHHccCCccccccCCCHHHH
Q 007106 360 ---------------------------------------------------------LAHAMAKSYNCEPLHGDISQSQR 382 (618)
Q Consensus 360 ---------------------------------------------------------l~~~L~~~~~~~~lhg~~~~~~r 382 (618)
+++.|.+.++-..+. ..++
T Consensus 386 C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~----r~d~ 461 (665)
T PRK14873 386 CARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVV----TSGG 461 (665)
T ss_pred hhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEE----EECh
Confidence 222222222111110 0123
Q ss_pred HHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCCC------------ChhHHHHhhhccCCCCCcceEEEEecch
Q 007106 383 ERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN------------TSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 383 ~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~------------~~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
+.+++.|. ++.+|||+|+.++.=+. ++++.|++.|.+. ....+.|..||++|..+.|.+++...++
T Consensus 462 d~~l~~~~-~~~~IlVGTqgaepm~~-g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~p~ 539 (665)
T PRK14873 462 DQVVDTVD-AGPALVVATPGAEPRVE-GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAESS 539 (665)
T ss_pred HHHHHhhc-cCCCEEEECCCCccccc-CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCC
Confidence 45778886 48999999993221111 3567776666542 2344679999999999999999886554
No 150
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.64 E-value=6.1e-16 Score=122.30 Aligned_cols=72 Identities=38% Similarity=0.779 Sum_probs=70.1
Q ss_pred cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCC
Q 007106 367 SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAG 438 (618)
Q Consensus 367 ~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g 438 (618)
.+.+..+|+++++.+|+.+++.|++++..|||||+++++|||+|++++||++++|+++.+|.|++||++|.|
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 488999999999999999999999999999999999999999999999999999999999999999999975
No 151
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.62 E-value=1.5e-14 Score=143.55 Aligned_cols=107 Identities=18% Similarity=0.310 Sum_probs=91.4
Q ss_pred CCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcC-CccE-EEEccccccCCCCCCccEEEEcCC
Q 007106 344 GGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDG-RFNI-LIATDVAARGLDVPNVDLIIHYEL 420 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g-~~~v-LVaT~~~~~Gidi~~~~~VI~~~~ 420 (618)
.-+.|||.+.....+.+.-.|.+ .+.|..+.|.|++..|...++.|++. +|.| ||+-.+.++-+|+..+.+|+++|+
T Consensus 638 t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDP 717 (791)
T KOG1002|consen 638 TAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDP 717 (791)
T ss_pred chhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecc
Confidence 34789999999999999888866 49999999999999999999999875 4555 666688888899999999999999
Q ss_pred CCChhHHHHhhhccCCCCC--cceEEEEecch
Q 007106 421 PNTSETFVHRTGRTGRAGK--KGSAILIYTDQ 450 (618)
Q Consensus 421 p~~~~~~~Qr~GR~gR~g~--~g~~~~~~~~~ 450 (618)
.|++.--.|..-|++|.|+ +-.++.|+-++
T Consensus 718 WWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 718 WWNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred cccHHHHhhhhhhHHhhcCccceeEEEeehhc
Confidence 9999999999999999986 45566666544
No 152
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=7.8e-14 Score=151.01 Aligned_cols=124 Identities=20% Similarity=0.261 Sum_probs=89.3
Q ss_pred ChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC--C
Q 007106 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--S 199 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~--~ 199 (618)
+++.|.-. .+.-.+.-|..+.||.|||+++.+|++-..+. +..+-||+++.-||..-++++..++. +
T Consensus 86 ~ydVQliG--gl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~---------GkgVhVVTvNdYLA~RDae~m~~vy~~LG 154 (939)
T PRK12902 86 HFDVQLIG--GMVLHEGQIAEMKTGEGKTLVATLPSYLNALT---------GKGVHVVTVNDYLARRDAEWMGQVHRFLG 154 (939)
T ss_pred cchhHHHh--hhhhcCCceeeecCCCChhHHHHHHHHHHhhc---------CCCeEEEeCCHHHHHhHHHHHHHHHHHhC
Confidence 55556443 33334568999999999999999998876655 77799999999999988888776553 4
Q ss_pred CcEEEEEcCcchhhhhHHhhcCCCEEEEChHHH-HHHHHhc------CCCCCCccEEEEchhhhhc
Q 007106 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l-~~~l~~~------~~~l~~~~~vViDEaH~~~ 258 (618)
+.+.++..+.+... +.....|+|+++|+..| .++|... ....+.+.++||||+|.++
T Consensus 155 Ltvg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 155 LSVGLIQQDMSPEE--RKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred CeEEEECCCCChHH--HHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 66666655544333 33455789999999888 3443322 1235678999999999874
No 153
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.61 E-value=2.9e-13 Score=150.31 Aligned_cols=105 Identities=21% Similarity=0.395 Sum_probs=75.1
Q ss_pred cCCeEEEEecchhHHHHHHHHHHccCCc-cccccCCCHHHHHHHHHHHhc----CCccEEEEccccccCCCCCC--ccEE
Q 007106 343 KGGKCIVFTQTKRDADRLAHAMAKSYNC-EPLHGDISQSQRERTLSAFRD----GRFNILIATDVAARGLDVPN--VDLI 415 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~-~~lhg~~~~~~r~~i~~~f~~----g~~~vLVaT~~~~~Gidi~~--~~~V 415 (618)
..+.+||++++.+..+.+++.|...... ...++. ..+..+++.|++ ++..||++|..+.+|||+|+ +++|
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 3456899999999999999998654322 233443 356778877764 67789999999999999987 7889
Q ss_pred EEcCCCC----Chh--------------------------HHHHhhhccCCCCCcceEEEEecch
Q 007106 416 IHYELPN----TSE--------------------------TFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 416 I~~~~p~----~~~--------------------------~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
|+...|. ++. .+.|.+||+-|..++--+++++++.
T Consensus 610 II~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 610 IITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 9877764 221 2358999999986554444554443
No 154
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.59 E-value=7.1e-13 Score=148.48 Aligned_cols=103 Identities=20% Similarity=0.302 Sum_probs=75.3
Q ss_pred CCeEEEEecchhHHHHHHHHHHccCC--ccccccCCCHHHHHHHHHHHhcCCc-cEEEEccccccCCCCCC--ccEEEEc
Q 007106 344 GGKCIVFTQTKRDADRLAHAMAKSYN--CEPLHGDISQSQRERTLSAFRDGRF-NILIATDVAARGLDVPN--VDLIIHY 418 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~~~~--~~~lhg~~~~~~r~~i~~~f~~g~~-~vLVaT~~~~~Gidi~~--~~~VI~~ 418 (618)
++++|||+++.+.++.+++.+..... ....++. ..+..+++.|++..- .++|+|..+.+|||+++ ...||+.
T Consensus 479 ~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~---~~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~ 555 (654)
T COG1199 479 PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGE---DEREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIV 555 (654)
T ss_pred CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCC---CcHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEE
Confidence 45899999999999999999976533 2333444 344478888877554 89999999999999987 5778887
Q ss_pred CCCCC------------------------------hhHHHHhhhccCCCCCcceEEEEecc
Q 007106 419 ELPNT------------------------------SETFVHRTGRTGRAGKKGSAILIYTD 449 (618)
Q Consensus 419 ~~p~~------------------------------~~~~~Qr~GR~gR~g~~g~~~~~~~~ 449 (618)
..|.. +..+.|.+||+-|.-.+.-++++++.
T Consensus 556 ~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 556 GLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 77642 12346999999997554444444443
No 155
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.55 E-value=2.5e-13 Score=148.25 Aligned_cols=309 Identities=17% Similarity=0.249 Sum_probs=200.5
Q ss_pred ChHHHHHHHHHHhC-CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC-
Q 007106 122 LFPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS- 199 (618)
Q Consensus 122 l~~~Q~~~i~~i~~-~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~- 199 (618)
..|+|.++++.+.+ +.++++.+|+|||||+++-++++.. ....++++++|..+.+...++.+.+.+..
T Consensus 1144 ~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~----------~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~ 1213 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRP----------DTIGRAVYIAPLEEIADEQYRDWEKKFSKL 1213 (1674)
T ss_pred cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCC----------ccceEEEEecchHHHHHHHHHHHHHhhccc
Confidence 46788888887755 4569999999999999988877651 33568999999999998888777665542
Q ss_pred --CcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCC-----cHHHHHHHHHh
Q 007106 200 --LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-----FAEDVEVILER 272 (618)
Q Consensus 200 --~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~-----~~~~~~~il~~ 272 (618)
..++.++|...... .+....+|+|+||+++..+ + ..+.+++.|.||.|.+.+.. ..-.++.+-.+
T Consensus 1214 ~G~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q 1285 (1674)
T KOG0951|consen 1214 LGLRIVKLTGETSLDL---KLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQ 1285 (1674)
T ss_pred cCceEEecCCccccch---HHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHH
Confidence 33444444443322 2334469999999999655 2 47889999999999875431 01125666667
Q ss_pred CCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcc--h----hHHHHHHHHHhccCCe
Q 007106 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE--K----PSIIGQLITEHAKGGK 346 (618)
Q Consensus 273 l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--k----~~~l~~ll~~~~~~~~ 346 (618)
+-++.+++.+|..+.+. +.+ ..+.....+++. ......+..+.+..+...... . ...+..+......+++
T Consensus 1286 ~~k~ir~v~ls~~lana-~d~--ig~s~~~v~Nf~-p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~ 1361 (1674)
T KOG0951|consen 1286 LEKKIRVVALSSSLANA-RDL--IGASSSGVFNFS-PSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKP 1361 (1674)
T ss_pred HHhheeEEEeehhhccc-hhh--ccccccceeecC-cccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCC
Confidence 77788899998887652 222 111122222221 112222222222222221111 1 1122333444445789
Q ss_pred EEEEecchhHHHHHHHHH-----------------------HccCCccccccCCCHHHHHHHHHHHhcCCccEEEEcccc
Q 007106 347 CIVFTQTKRDADRLAHAM-----------------------AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403 (618)
Q Consensus 347 ~lVf~~~~~~~~~l~~~L-----------------------~~~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~ 403 (618)
.+||+++++.+..++..| ++.+++.+-|.+++..+...+..-|..|.+.|+|...-
T Consensus 1362 ~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~- 1440 (1674)
T KOG0951|consen 1362 AIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD- 1440 (1674)
T ss_pred eEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-
Confidence 999999999987766433 12234444488899999888889999999999887755
Q ss_pred ccCCCCCCccEEEEc-----C------CCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHH
Q 007106 404 ARGLDVPNVDLIIHY-----E------LPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457 (618)
Q Consensus 404 ~~Gidi~~~~~VI~~-----~------~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~ 457 (618)
-.|+-.. .+.||.+ | .+.++.++.|++|++.|+ +.|++++...+..++++
T Consensus 1441 ~~~~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~---~k~vi~~~~~~k~yykk 1501 (1674)
T KOG0951|consen 1441 CYGTKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA---GKCVIMCHTPKKEYYKK 1501 (1674)
T ss_pred ccccccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcCC---ccEEEEecCchHHHHHH
Confidence 5555542 3444432 2 355788899999999994 58999998877766654
No 156
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.54 E-value=2.6e-13 Score=158.09 Aligned_cols=321 Identities=18% Similarity=0.203 Sum_probs=206.8
Q ss_pred CCChHHHHHHHHHHhC-----CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007106 120 SKLFPIQKAVLEPAMQ-----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~-----~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~ 194 (618)
..++++|.+.++++.. ..+.++..++|.|||+..+..+...... .. ...+.++|+||+ +++.+|.+++.
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~-~~----~~~~~~liv~p~-s~~~nw~~e~~ 410 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLES-IK----VYLGPALIVVPA-SLLSNWKREFE 410 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhc-cc----CCCCCeEEEecH-HHHHHHHHHHh
Confidence 4578999999987652 4678999999999998876555542211 11 113579999997 88899999999
Q ss_pred HhCCCCc-EEEEEcCcch----hhhhH-HhhcC----CCEEEEChHHHHHHH-HhcCCCCCCccEEEEchhhhhccCCcH
Q 007106 195 ESAPSLD-TICVYGGTPI----SHQMR-ALDYG----VDAVVGTPGRVIDLI-KRNALNLSEVQFVVLDEADQMLSVGFA 263 (618)
Q Consensus 195 ~~~~~~~-~~~~~g~~~~----~~~~~-~l~~~----~~Ilv~T~~~l~~~l-~~~~~~l~~~~~vViDEaH~~~~~~~~ 263 (618)
++.+.++ +...++.... ..... .+... ++++++|++.+...+ ....+.-..+.++|+||+|++.+.. .
T Consensus 411 k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~-s 489 (866)
T COG0553 411 KFAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ-S 489 (866)
T ss_pred hhCccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh-h
Confidence 9998888 7777766541 22222 22221 799999999997732 1122334578899999999976542 1
Q ss_pred HHHHHHHHhCCCCCcEEEEEecCC-hHHHHHHHH----------------------------------------------
Q 007106 264 EDVEVILERLPQNRQSMMFSATMP-PWIRSLTNK---------------------------------------------- 296 (618)
Q Consensus 264 ~~~~~il~~l~~~~~~l~lSAT~~-~~~~~~~~~---------------------------------------------- 296 (618)
.....+. .++... .+++|.||. +.+.++...
T Consensus 490 ~~~~~l~-~~~~~~-~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 567 (866)
T COG0553 490 SEGKALQ-FLKALN-RLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRK 567 (866)
T ss_pred HHHHHHH-HHhhcc-eeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHH
Confidence 1111111 222111 244455541 111110000
Q ss_pred ----hccCCceEe--eccCC--------------------------------------cc----------c---------
Q 007106 297 ----YLKNPLTVD--LVGDS--------------------------------------DQ----------K--------- 313 (618)
Q Consensus 297 ----~l~~~~~i~--~~~~~--------------------------------------~~----------~--------- 313 (618)
++....... +.... .. .
T Consensus 568 ~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 647 (866)
T COG0553 568 LLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTR 647 (866)
T ss_pred HHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHH
Confidence 000000000 00000 00 0
Q ss_pred ---ccCCeEEEEE--ec-----------------------cCc-chhHHHHHHH-HH-hccCC--eEEEEecchhHHHHH
Q 007106 314 ---LADGISLYSI--AT-----------------------SMY-EKPSIIGQLI-TE-HAKGG--KCIVFTQTKRDADRL 360 (618)
Q Consensus 314 ---~~~~~~~~~~--~~-----------------------~~~-~k~~~l~~ll-~~-~~~~~--~~lVf~~~~~~~~~l 360 (618)
+......... .. ... .|...+.+++ .. ...+. +++||++.....+.+
T Consensus 648 lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il 727 (866)
T COG0553 648 LRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLL 727 (866)
T ss_pred HHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHH
Confidence 0000000000 00 000 3455566666 33 33455 899999999999999
Q ss_pred HHHHHcc-CCccccccCCCHHHHHHHHHHHhcC--CccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCC
Q 007106 361 AHAMAKS-YNCEPLHGDISQSQRERTLSAFRDG--RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRA 437 (618)
Q Consensus 361 ~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g--~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~ 437 (618)
...|... +....++|.++..+|..+++.|.++ ...++++|.+.+.|+|+..+++||++|+.|++....|...|++|.
T Consensus 728 ~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~Ri 807 (866)
T COG0553 728 EDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRI 807 (866)
T ss_pred HHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHh
Confidence 9999776 5888999999999999999999986 456677888999999999999999999999999999999999999
Q ss_pred CCcceEEEEecc
Q 007106 438 GKKGSAILIYTD 449 (618)
Q Consensus 438 g~~g~~~~~~~~ 449 (618)
|++..+.++...
T Consensus 808 gQ~~~v~v~r~i 819 (866)
T COG0553 808 GQKRPVKVYRLI 819 (866)
T ss_pred cCcceeEEEEee
Confidence 988777766543
No 157
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.53 E-value=9.6e-13 Score=141.28 Aligned_cols=290 Identities=17% Similarity=0.162 Sum_probs=181.5
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHH
Q 007106 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 217 (618)
-.+|.+|+|||||.+.+-++-..+ + .+..++|+|..+++|+.+.++.+++..-. ..+ .+...... ..
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l-~-------~~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv-~Y~d~~~~---~i 117 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDAL-K-------NPDKSVLVVSHRRSLTKSLAERFKKAGLS-GFV-NYLDSDDY---II 117 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhc-c-------CCCCeEEEEEhHHHHHHHHHHHHhhcCCC-cce-eeeccccc---cc
Confidence 378999999999976544333322 1 12568999999999999999999865310 111 12111100 01
Q ss_pred hhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHH-------HHHHHhCCCCCcEEEEEecCChHH
Q 007106 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDV-------EVILERLPQNRQSMMFSATMPPWI 290 (618)
Q Consensus 218 l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~-------~~il~~l~~~~~~l~lSAT~~~~~ 290 (618)
-...++-++++.+.|.++.. ..+.++++|||||+-.++..-+.+.+ ..+...+.....+|+|-||+.+.+
T Consensus 118 ~~~~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~t 194 (824)
T PF02399_consen 118 DGRPYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQT 194 (824)
T ss_pred cccccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHH
Confidence 11235788888898877643 23677999999999976654332222 223344456778999999999999
Q ss_pred HHHHHHhccCCceEeeccCCcccccCCeEEE----------------------------------EEeccCcchhHHHHH
Q 007106 291 RSLTNKYLKNPLTVDLVGDSDQKLADGISLY----------------------------------SIATSMYEKPSIIGQ 336 (618)
Q Consensus 291 ~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~k~~~l~~ 336 (618)
-+++..+..+.....++......-....... ...............
T Consensus 195 vdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~ 274 (824)
T PF02399_consen 195 VDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSE 274 (824)
T ss_pred HHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHH
Confidence 9988886544332222111100000000000 000001223456667
Q ss_pred HHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCc--c
Q 007106 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV--D 413 (618)
Q Consensus 337 ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~--~ 413 (618)
++..+..++++-||+.++..++.+++..... ..+..+++..+.. .+ +. -++++|++-|+++..|+++... +
T Consensus 275 L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~---dv-~~--W~~~~VviYT~~itvG~Sf~~~HF~ 348 (824)
T PF02399_consen 275 LLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLE---DV-ES--WKKYDVVIYTPVITVGLSFEEKHFD 348 (824)
T ss_pred HHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcc---cc-cc--ccceeEEEEeceEEEEeccchhhce
Confidence 7777888899999999999999999888654 4566666665444 22 22 3668999999999999998653 3
Q ss_pred EEEEcCCC--C--ChhHHHHhhhccCCCCCcceEEEEecch
Q 007106 414 LIIHYELP--N--TSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 414 ~VI~~~~p--~--~~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
-|.-|--| . +..+..|++||+-.. ...+.+++++..
T Consensus 349 ~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 349 SMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred EEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 34444223 2 455689999999444 455677776654
No 158
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.52 E-value=1.6e-12 Score=138.01 Aligned_cols=119 Identities=17% Similarity=0.212 Sum_probs=98.2
Q ss_pred hhHHHHHHHHHhc-cCCeEEEEecchhHHHHHHHHHHc-----------------------cCCccccccCCCHHHHHHH
Q 007106 330 KPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAK-----------------------SYNCEPLHGDISQSQRERT 385 (618)
Q Consensus 330 k~~~l~~ll~~~~-~~~~~lVf~~~~~~~~~l~~~L~~-----------------------~~~~~~lhg~~~~~~r~~i 385 (618)
|..+|.++|.... -+.++|||.++....+.+..+|.. ......|.|.....+|+..
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 3344555555443 378999999999999999888842 1124457888999999999
Q ss_pred HHHHhcCC----ccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEec
Q 007106 386 LSAFRDGR----FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448 (618)
Q Consensus 386 ~~~f~~g~----~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~ 448 (618)
...|++-. ...||+|.+.+-|||+-.++.||+||..|+|..-+|.|=|+-|.|+...||++-.
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRf 1273 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRF 1273 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhh
Confidence 99998743 4579999999999999999999999999999999999999999999999888754
No 159
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.49 E-value=2.2e-11 Score=124.73 Aligned_cols=286 Identities=20% Similarity=0.263 Sum_probs=193.8
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhCCCC-cE------EEEEc---------------CcchhhhhHHhh----------
Q 007106 172 RNPLCLVLAPTRELAKQVEKEFHESAPSL-DT------ICVYG---------------GTPISHQMRALD---------- 219 (618)
Q Consensus 172 ~~~~~lil~Pt~~La~q~~~~l~~~~~~~-~~------~~~~g---------------~~~~~~~~~~l~---------- 219 (618)
..|+||||||++..|.++.+.+.++++.. .+ .--++ .....+......
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 36899999999999999999998877641 10 00011 001111111110
Q ss_pred --------------cCCCEEEEChHHHHHHHHh------cCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhC---CC-
Q 007106 220 --------------YGVDAVVGTPGRVIDLIKR------NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL---PQ- 275 (618)
Q Consensus 220 --------------~~~~Ilv~T~~~l~~~l~~------~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l---~~- 275 (618)
..+|||||+|=-|...+.. +...|+.+.++|||.+|.++..+ -+.+..+++.+ |.
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQN-W~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQN-WEHVLHVFEHLNLQPKK 194 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhh-HHHHHHHHHHhccCCCC
Confidence 1489999999999877764 23347889999999999765432 34445555544 22
Q ss_pred --------------------CCcEEEEEecCChHHHHHHHHhccCCceE-eeccCCc-----ccccCCeEEEEEeccC--
Q 007106 276 --------------------NRQSMMFSATMPPWIRSLTNKYLKNPLTV-DLVGDSD-----QKLADGISLYSIATSM-- 327 (618)
Q Consensus 276 --------------------~~~~l~lSAT~~~~~~~~~~~~l~~~~~i-~~~~~~~-----~~~~~~~~~~~~~~~~-- 327 (618)
-+|+|++|+...+++..+....+.+..-. .+..... ..+...+.+.....+.
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 25999999999999999988866554322 2211111 1222233333322111
Q ss_pred -c----chhHHH-HHHHHHhc---cCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEE
Q 007106 328 -Y----EKPSII-GQLITEHA---KGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNIL 397 (618)
Q Consensus 328 -~----~k~~~l-~~ll~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vL 397 (618)
. .+.... ..++.... ....+|||+++--+--.+..+|++. +....+|.-.++.+-.++-..|..|+.+||
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iL 354 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPIL 354 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEE
Confidence 1 111111 12222222 4568999999999999999999754 788889998999999999999999999999
Q ss_pred EEccccc--cCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCC------cceEEEEecchhHHHHHHH
Q 007106 398 IATDVAA--RGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGK------KGSAILIYTDQQARQVKSI 458 (618)
Q Consensus 398 VaT~~~~--~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~------~g~~~~~~~~~~~~~~~~l 458 (618)
+.|.-+- +=..|..+.+||.|.+|..+.-|...+.-...... ...|.++|+.-|...++.|
T Consensus 355 L~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 355 LYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred EEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 9997543 44678899999999999999988887765554432 5789999999888777665
No 160
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.46 E-value=1.8e-13 Score=109.27 Aligned_cols=80 Identities=46% Similarity=0.866 Sum_probs=73.5
Q ss_pred HHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCC
Q 007106 359 RLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRA 437 (618)
Q Consensus 359 ~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~ 437 (618)
.+++.|.+ .+.+..+|++++.++|..+++.|+++...|||+|+++++|+|++.+++||++++|++..+|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 35555644 47889999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 007106 438 G 438 (618)
Q Consensus 438 g 438 (618)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 161
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.46 E-value=3.1e-11 Score=135.40 Aligned_cols=73 Identities=21% Similarity=0.230 Sum_probs=58.7
Q ss_pred CCCCChHHHHHHHHH----HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007106 118 GISKLFPIQKAVLEP----AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (618)
Q Consensus 118 ~~~~l~~~Q~~~i~~----i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l 193 (618)
.+..++|.|++.+.. +..+.++++.+|||+|||++.|.+++..+.+. ....++++++.|..-..|+.+++
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~------~~~~kIiy~sRThsQl~q~i~El 80 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK------PEVRKIIYASRTHSQLEQATEEL 80 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc------cccccEEEEcccchHHHHHHHHH
Confidence 455569999887765 44568899999999999999999988876431 12368999999999999999999
Q ss_pred HHh
Q 007106 194 HES 196 (618)
Q Consensus 194 ~~~ 196 (618)
++.
T Consensus 81 k~~ 83 (705)
T TIGR00604 81 RKL 83 (705)
T ss_pred Hhh
Confidence 884
No 162
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.45 E-value=3.6e-12 Score=139.67 Aligned_cols=117 Identities=22% Similarity=0.246 Sum_probs=91.3
Q ss_pred HHHHHHHHhccCCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCC-
Q 007106 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP- 410 (618)
Q Consensus 333 ~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~- 410 (618)
++.++.+.+..+.++||-+.+++..+.|...|.+ .+++.++++.....|-+.|-+.=+ .-.|.|||++++||.||.
T Consensus 617 ii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~--~GaVTIATNMAGRGTDIkL 694 (1112)
T PRK12901 617 VIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQ--PGTVTIATNMAGRGTDIKL 694 (1112)
T ss_pred HHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCC--CCcEEEeccCcCCCcCccc
Confidence 3445555567799999999999999999999975 488888888755444333322222 346899999999999996
Q ss_pred -------CccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchh
Q 007106 411 -------NVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451 (618)
Q Consensus 411 -------~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 451 (618)
.=-+||-...+.|..--.|..||+||.|.+|.+-.|++-+|
T Consensus 695 g~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 695 SPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred chhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 22378888889899989999999999999999888887554
No 163
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.36 E-value=3.4e-12 Score=108.92 Aligned_cols=135 Identities=19% Similarity=0.127 Sum_probs=81.5
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhh
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~ 215 (618)
++-.+|-..+|+|||.-.+.-++...++ .+.++|||.||+.++..+.+.++.. .+.....-..
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~--------~~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~~~~----- 66 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK--------RRLRVLVLAPTRVVAEEMYEALKGL----PVRFHTNARM----- 66 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH--------TT--EEEEESSHHHHHHHHHHTTTS----SEEEESTTSS-----
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH--------ccCeEEEecccHHHHHHHHHHHhcC----CcccCceeee-----
Confidence 3446889999999998776666655443 2678999999999999999988753 2222111110
Q ss_pred HHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCC--cHHHHHHHHHhCCCCCcEEEEEecCChHH
Q 007106 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG--FAEDVEVILERLPQNRQSMMFSATMPPWI 290 (618)
Q Consensus 216 ~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~--~~~~~~~il~~l~~~~~~l~lSAT~~~~~ 290 (618)
.....+..|-|+|+..+.+.+.+ .....++++||+||||...... +.-.+... ... ....+|+||||||-..
T Consensus 67 ~~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~-~~~-g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 67 RTHFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLREL-AES-GEAKVIFMTATPPGSE 140 (148)
T ss_dssp ----SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHH-HHT-TS-EEEEEESS-TT--
T ss_pred ccccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHh-hhc-cCeeEEEEeCCCCCCC
Confidence 12234457889999999888766 5557899999999999642211 11111111 121 3467999999998743
No 164
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.35 E-value=6.2e-12 Score=127.30 Aligned_cols=154 Identities=19% Similarity=0.115 Sum_probs=93.1
Q ss_pred HHHHHHHHHhC-------------CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHH
Q 007106 125 IQKAVLEPAMQ-------------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (618)
Q Consensus 125 ~Q~~~i~~i~~-------------~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~ 191 (618)
||.+++..++. ...+|+..++|+|||++++..+. .+..... ......+|||||. .+..||.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~---~~~~~~~LIv~P~-~l~~~W~~ 75 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFP---QRGEKKTLIVVPS-SLLSQWKE 75 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCT---TSS-S-EEEEE-T-TTHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhccc---cccccceeEeecc-chhhhhhh
Confidence 57777776532 24589999999999988755544 3332111 1112259999999 88899999
Q ss_pred HHHHhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHH-----HHHHhcCCCCCCccEEEEchhhhhccCCcHH
Q 007106 192 EFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI-----DLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264 (618)
Q Consensus 192 ~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~-----~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~ 264 (618)
++.++++ .+++....+...............+++|+|++.+. ..... +...++++||+||+|.+.+. ..
T Consensus 76 E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~--l~~~~~~~vIvDEaH~~k~~--~s 151 (299)
T PF00176_consen 76 EIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKED--LKQIKWDRVIVDEAHRLKNK--DS 151 (299)
T ss_dssp HHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHH--HHTSEEEEEEETTGGGGTTT--TS
T ss_pred hhccccccccccccccccccccccccccccccceeeeccccccccccccccccc--cccccceeEEEecccccccc--cc
Confidence 9999984 45555555444122222223345799999999998 11111 11235899999999998543 33
Q ss_pred HHHHHHHhCCCCCcEEEEEecCCh
Q 007106 265 DVEVILERLPQNRQSMMFSATMPP 288 (618)
Q Consensus 265 ~~~~il~~l~~~~~~l~lSAT~~~ 288 (618)
.....+..+. ...+++|||||..
T Consensus 152 ~~~~~l~~l~-~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 152 KRYKALRKLR-ARYRWLLSGTPIQ 174 (299)
T ss_dssp HHHHHHHCCC-ECEEEEE-SS-SS
T ss_pred cccccccccc-cceEEeecccccc
Confidence 4444555565 6678999999854
No 165
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=6.7e-10 Score=112.09 Aligned_cols=340 Identities=21% Similarity=0.289 Sum_probs=212.3
Q ss_pred CCCCChHHHHHHHHHHhCCCCEEE-EccCCChh--HHHHHHHHHHHHHHHhhh--------cC-------------C-CC
Q 007106 118 GISKLFPIQKAVLEPAMQGRDMIG-RARTGTGK--TLAFGIPILDKIIKFNEK--------HG-------------R-GR 172 (618)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~ll-~~~tGsGK--T~~~l~~~l~~i~~~~~~--------~~-------------~-~~ 172 (618)
.-..+|+.|.+.+..+.+-+|++. ....+.|+ +-+|++.++.++++.... .. + -.
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 346799999999999999898764 33345555 467888889888763331 00 0 13
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcE-----------EEEEcCcc---------hhh-------------------
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDT-----------ICVYGGTP---------ISH------------------- 213 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~-----------~~~~g~~~---------~~~------------------- 213 (618)
.++||||||+++.|..+.+.+..++.+..- .--+++.+ +..
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 588999999999999999888776432110 00111100 000
Q ss_pred ---hhHHhh--cCCCEEEEChHHHHHHHHhc------CCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCC---CC---
Q 007106 214 ---QMRALD--YGVDAVVGTPGRVIDLIKRN------ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP---QN--- 276 (618)
Q Consensus 214 ---~~~~l~--~~~~Ilv~T~~~l~~~l~~~------~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~---~~--- 276 (618)
.++... ...+||||+|=-|...+... ...++.+.++|||-+|.++..++ ..+..++..+. ..
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCcccccC
Confidence 001111 25799999999887777632 22367788999999998875543 34445555542 11
Q ss_pred ------------------CcEEEEEecCChHHHHHHHHhccCCceEe----ec-----cCCcccccCCeE---EEEEecc
Q 007106 277 ------------------RQSMMFSATMPPWIRSLTNKYLKNPLTVD----LV-----GDSDQKLADGIS---LYSIATS 326 (618)
Q Consensus 277 ------------------~~~l~lSAT~~~~~~~~~~~~l~~~~~i~----~~-----~~~~~~~~~~~~---~~~~~~~ 326 (618)
+|++++|+--.+....+...++.+..-.. +. ......+.+.+. ...+...
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~ 531 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIET 531 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccC
Confidence 37788888877777777766654432110 00 000111111111 1111122
Q ss_pred CcchhHHHH-HHHHHhcc--CCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccc
Q 007106 327 MYEKPSIIG-QLITEHAK--GGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402 (618)
Q Consensus 327 ~~~k~~~l~-~ll~~~~~--~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~ 402 (618)
.+.+..... .++-...+ ...+|||.|+--.--.+..++++. +....+|.-.++..-.++-+.|..|...||+-|.-
T Consensus 532 ~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER 611 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTER 611 (698)
T ss_pred chHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehh
Confidence 222222221 12222211 246799999999999999999765 66666666666666677888899999999999975
Q ss_pred c--ccCCCCCCccEEEEcCCCCChhHHH---HhhhccCCCC----CcceEEEEecchhHHHHHHH
Q 007106 403 A--ARGLDVPNVDLIIHYELPNTSETFV---HRTGRTGRAG----KKGSAILIYTDQQARQVKSI 458 (618)
Q Consensus 403 ~--~~Gidi~~~~~VI~~~~p~~~~~~~---Qr~GR~gR~g----~~g~~~~~~~~~~~~~~~~l 458 (618)
+ -+--+|..+..||+|.+|.+|.-|. .+.+|+--.| ..-.|.++|+.-|...++.+
T Consensus 612 ~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 612 AHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENI 676 (698)
T ss_pred hhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHh
Confidence 4 3457899999999999999998765 4444543222 34578899998887777654
No 166
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.21 E-value=2.3e-09 Score=122.59 Aligned_cols=284 Identities=18% Similarity=0.209 Sum_probs=159.1
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhH
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~ 216 (618)
+..+|...+|||||++.+..+- .+.+. ...++++||+-++.|-.|+.+++..+........ ...+...-.+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~-~l~~~------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~--~~~s~~~Lk~ 344 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLAR-LLLEL------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP--KAESTSELKE 344 (962)
T ss_pred CceEEEeecCCchHHHHHHHHH-HHHhc------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc--cccCHHHHHH
Confidence 3489999999999987644432 33221 3478999999999999999999998754333222 3344444445
Q ss_pred HhhcC-CCEEEEChHHHHHHHHhcC--CCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHH
Q 007106 217 ALDYG-VDAVVGTPGRVIDLIKRNA--LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSL 293 (618)
Q Consensus 217 ~l~~~-~~Ilv~T~~~l~~~l~~~~--~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~ 293 (618)
.+... -.|+|||.+.|...+.... ..-.+-=+||+|||||-- ++.....+...+ ++...++||.||.-.-...
T Consensus 345 ~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~-~~a~~~gFTGTPi~~~d~~ 420 (962)
T COG0610 345 LLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKAL-KKAIFIGFTGTPIFKEDKD 420 (962)
T ss_pred HHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHh-ccceEEEeeCCcccccccc
Confidence 55544 4899999999987776541 112223378999999842 334333443444 4588999999985321111
Q ss_pred -HHHhccCCceEeeccCC-cccccCCeEEEEEec--------------------------------------------cC
Q 007106 294 -TNKYLKNPLTVDLVGDS-DQKLADGISLYSIAT--------------------------------------------SM 327 (618)
Q Consensus 294 -~~~~l~~~~~i~~~~~~-~~~~~~~~~~~~~~~--------------------------------------------~~ 327 (618)
....+.+.+....+.+. ..... +++++... ..
T Consensus 421 tt~~~fg~ylh~Y~i~daI~Dg~v--l~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 498 (962)
T COG0610 421 TTKDVFGDYLHTYTITDAIRDGAV--LPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLA 498 (962)
T ss_pred chhhhhcceeEEEecchhhccCce--eeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcch
Confidence 11122221111110000 00000 00000000 00
Q ss_pred cchhHHHH----HHHHHhccCCeEEEEecchhHHHHHHHHHHccC--------C----------------ccccccCCCH
Q 007106 328 YEKPSIIG----QLITEHAKGGKCIVFTQTKRDADRLAHAMAKSY--------N----------------CEPLHGDISQ 379 (618)
Q Consensus 328 ~~k~~~l~----~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~--------~----------------~~~lhg~~~~ 379 (618)
........ +..+......++.++|.++..+..+++...... . ....|... .
T Consensus 499 ~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~ 577 (962)
T COG0610 499 VRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL-K 577 (962)
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHH-H
Confidence 00000111 111112235688888888885555544332110 0 00001111 2
Q ss_pred HHHHHHHHHH--hcCCccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCC
Q 007106 380 SQRERTLSAF--RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRA 437 (618)
Q Consensus 380 ~~r~~i~~~f--~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~ 437 (618)
..++.....| .+...++||.++.+-+|.|.|.++++.. |-|.---.++|.+-|+.|.
T Consensus 578 ~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmYv-DK~Lk~H~L~QAisRtNR~ 636 (962)
T COG0610 578 DEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLYV-DKPLKYHNLIQAISRTNRV 636 (962)
T ss_pred HHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEEe-ccccccchHHHHHHHhccC
Confidence 2233344443 4567999999999999999999887664 6666666789999999995
No 167
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.20 E-value=1.4e-09 Score=113.77 Aligned_cols=109 Identities=18% Similarity=0.295 Sum_probs=92.1
Q ss_pred CCeEEEEecchhHHHHHHHHHHcc-CCc------------------cccccCCCHHHHHHHHHHHhcCC---ccEEEEcc
Q 007106 344 GGKCIVFTQTKRDADRLAHAMAKS-YNC------------------EPLHGDISQSQRERTLSAFRDGR---FNILIATD 401 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~~-~~~------------------~~lhg~~~~~~r~~i~~~f~~g~---~~vLVaT~ 401 (618)
+.++|||.......+.+.+.|.+. ++| .-+.|..+..+|++.+++|++-- ..++++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 578999999999999999988652 322 23567788999999999998642 36889999
Q ss_pred ccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhH
Q 007106 402 VAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452 (618)
Q Consensus 402 ~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 452 (618)
+..-|||+-.++.+|++|+-|++..-.|.+-|+-|.|++..|+++-.--|.
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~ 849 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDN 849 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhh
Confidence 999999999999999999999999999999999999999999988654443
No 168
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.13 E-value=7.2e-10 Score=110.26 Aligned_cols=74 Identities=24% Similarity=0.239 Sum_probs=57.6
Q ss_pred CCChHHHHHHH----HHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007106 120 SKLFPIQKAVL----EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 120 ~~l~~~Q~~~i----~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
.+++|.|.+.+ ..+..+.++|+.+|||+|||++++.|++..+....... ...+++|+++|..+..|...++++
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~---~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI---QKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc---cccceeEEeccHHHHHHHHHHHHh
Confidence 45799999844 45566788999999999999999999987765422110 134799999999999998888776
Q ss_pred h
Q 007106 196 S 196 (618)
Q Consensus 196 ~ 196 (618)
.
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 5
No 169
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.13 E-value=7.2e-10 Score=110.26 Aligned_cols=74 Identities=24% Similarity=0.239 Sum_probs=57.6
Q ss_pred CCChHHHHHHH----HHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007106 120 SKLFPIQKAVL----EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 120 ~~l~~~Q~~~i----~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
.+++|.|.+.+ ..+..+.++|+.+|||+|||++++.|++..+....... ...+++|+++|..+..|...++++
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~---~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI---QKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc---cccceeEEeccHHHHHHHHHHHHh
Confidence 45799999844 45566788999999999999999999987765422110 134799999999999998888776
Q ss_pred h
Q 007106 196 S 196 (618)
Q Consensus 196 ~ 196 (618)
.
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 5
No 170
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.06 E-value=3e-09 Score=115.59 Aligned_cols=317 Identities=19% Similarity=0.245 Sum_probs=180.5
Q ss_pred ChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC--
Q 007106 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS-- 199 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~-- 199 (618)
++|+=.+.+-.+.-...-+..+.||-|||+++.+|+.-..+. +..+.+++...-||.--++++..++..
T Consensus 79 ~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~---------gkgVhvVTvNdYLA~RDae~m~~l~~~LG 149 (822)
T COG0653 79 MRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA---------GKGVHVVTVNDYLARRDAEWMGPLYEFLG 149 (822)
T ss_pred CChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC---------CCCcEEeeehHHhhhhCHHHHHHHHHHcC
Confidence 444445556666666678999999999999999998665544 566888888889998777777766543
Q ss_pred CcEEEEEcCcchhhhhHHhhcCCCEEEEChHHH-HHHHHhc------CCCCCCccEEEEchhhhhccC------------
Q 007106 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQMLSV------------ 260 (618)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l-~~~l~~~------~~~l~~~~~vViDEaH~~~~~------------ 260 (618)
+.+.+...+.....+ .....|||.++|...| .+.+... ......+.+.|+||++.++=.
T Consensus 150 lsvG~~~~~m~~~ek--~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~ 227 (822)
T COG0653 150 LSVGVILAGMSPEEK--RAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPA 227 (822)
T ss_pred CceeeccCCCChHHH--HHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeeccc
Confidence 445555555543333 3344589999999887 4444332 112446889999999976411
Q ss_pred ----CcHHHHHHHHHhCCCCC--------cEEEEEec-CC--------------hHHH-------HHH--HHhccCCceE
Q 007106 261 ----GFAEDVEVILERLPQNR--------QSMMFSAT-MP--------------PWIR-------SLT--NKYLKNPLTV 304 (618)
Q Consensus 261 ----~~~~~~~~il~~l~~~~--------~~l~lSAT-~~--------------~~~~-------~~~--~~~l~~~~~i 304 (618)
.....+..++..+.... +.|.+|-. +. ..+. .+. ..+..|...+
T Consensus 228 ~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYI 307 (822)
T COG0653 228 EDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYI 307 (822)
T ss_pred ccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeE
Confidence 12334444443332211 11211111 00 0000 000 0000000000
Q ss_pred ------eeccCC----------------------------------------------------------cc--cccCCe
Q 007106 305 ------DLVGDS----------------------------------------------------------DQ--KLADGI 318 (618)
Q Consensus 305 ------~~~~~~----------------------------------------------------------~~--~~~~~~ 318 (618)
.+++.. .. ......
T Consensus 308 Vrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l 387 (822)
T COG0653 308 VRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGL 387 (822)
T ss_pred EecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCC
Confidence 000000 00 000000
Q ss_pred EEEEE---------------eccCcchh-HHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHH
Q 007106 319 SLYSI---------------ATSMYEKP-SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQ 381 (618)
Q Consensus 319 ~~~~~---------------~~~~~~k~-~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~ 381 (618)
....+ ......|. ..+.++...+.+++++||-+.+++..+.+.+.|.+ .++..++.......+
T Consensus 388 ~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~E 467 (822)
T COG0653 388 DVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHARE 467 (822)
T ss_pred ceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHH
Confidence 01111 11111232 34455566677899999999999999999999975 477777777765433
Q ss_pred HHHHHHHHhcCCccEEEEccccccCCCCCCcc-----------EEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecch
Q 007106 382 RERTLSAFRDGRFNILIATDVAARGLDVPNVD-----------LIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 382 r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~-----------~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
-+.+. ..--.-.|-|||+++++|-||.--. +||-..-..+-.---|..||+||.|-+|..-.+++-.
T Consensus 468 A~Iia--~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSle 545 (822)
T COG0653 468 AEIIA--QAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLE 545 (822)
T ss_pred HHHHh--hcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhH
Confidence 33332 2222345889999999999985322 3444333344444469999999999888877666544
Q ss_pred h
Q 007106 451 Q 451 (618)
Q Consensus 451 ~ 451 (618)
|
T Consensus 546 D 546 (822)
T COG0653 546 D 546 (822)
T ss_pred H
Confidence 3
No 171
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.86 E-value=2.9e-08 Score=106.07 Aligned_cols=46 Identities=9% Similarity=0.072 Sum_probs=39.4
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHh
Q 007106 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~ 165 (618)
-+.+.+-++.++.++.+.++++...|+|+||....+.+++.+.+..
T Consensus 405 gk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er 450 (1282)
T KOG0921|consen 405 GKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANER 450 (1282)
T ss_pred cchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhh
Confidence 4567888899999999999999999999999988888888876633
No 172
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.82 E-value=4.6e-08 Score=94.60 Aligned_cols=126 Identities=21% Similarity=0.261 Sum_probs=89.2
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC-
Q 007106 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP- 198 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~- 198 (618)
..|++.|.-++-.+..+ .|++..||-|||+++.+|++...+. +..|-|++.+..||..=++++..++.
T Consensus 76 ~~p~~vQll~~l~L~~G--~laEm~TGEGKTli~~l~a~~~AL~---------G~~V~vvT~NdyLA~RD~~~~~~~y~~ 144 (266)
T PF07517_consen 76 LRPYDVQLLGALALHKG--RLAEMKTGEGKTLIAALPAALNALQ---------GKGVHVVTSNDYLAKRDAEEMRPFYEF 144 (266)
T ss_dssp ----HHHHHHHHHHHTT--SEEEESTTSHHHHHHHHHHHHHHTT---------SS-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHhhhhhcccc--eeEEecCCCCcHHHHHHHHHHHHHh---------cCCcEEEeccHHHhhccHHHHHHHHHH
Confidence 44888898888777664 4999999999999988887766554 77899999999999988888777654
Q ss_pred -CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHH-HHHHhcC------CCCCCccEEEEchhhhhc
Q 007106 199 -SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI-DLIKRNA------LNLSEVQFVVLDEADQML 258 (618)
Q Consensus 199 -~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~-~~l~~~~------~~l~~~~~vViDEaH~~~ 258 (618)
++.+.+++...+...+.... .++|+++|...+. +.|.... .....+.++||||+|.++
T Consensus 145 LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 145 LGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp TT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 56677777776654433333 4689999999984 4454421 114678999999999764
No 173
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.65 E-value=1.7e-07 Score=104.43 Aligned_cols=141 Identities=16% Similarity=0.247 Sum_probs=84.8
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHH-----HhC----CC--CcEEEE
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH-----ESA----PS--LDTICV 205 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~-----~~~----~~--~~~~~~ 205 (618)
.++.+.++||+|||.+|+-.|+...... ...++||+||+.+..+.+...+. .+| .+ +...++
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~-------~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~ 132 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKY-------GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVI 132 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHc-------CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEE
Confidence 3689999999999999988887664431 23579999999988887765544 222 22 222333
Q ss_pred EcCc-------chhhhhHHhh-------cCCCEEEEChHHHHHHHH-hc---C-------CCCCCc----cEEEEchhhh
Q 007106 206 YGGT-------PISHQMRALD-------YGVDAVVGTPGRVIDLIK-RN---A-------LNLSEV----QFVVLDEADQ 256 (618)
Q Consensus 206 ~g~~-------~~~~~~~~l~-------~~~~Ilv~T~~~l~~~l~-~~---~-------~~l~~~----~~vViDEaH~ 256 (618)
.+.. ......+... +.+.|+|+|.++|..... .. . ..+..+ -+||+||.|+
T Consensus 133 ~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~ 212 (986)
T PRK15483 133 NAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHR 212 (986)
T ss_pred ecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCC
Confidence 3221 0011111111 147899999999865321 10 0 111111 3899999999
Q ss_pred hccCCcHHHHHHHHHhCCCCCcEEEEEecCCh
Q 007106 257 MLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (618)
Q Consensus 257 ~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~ 288 (618)
+... ...+..| ..+.+.+ +|.+|||.+.
T Consensus 213 ~~~~--~k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 213 FPRD--NKFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred CCcc--hHHHHHH-HhcCccc-EEEEeeecCC
Confidence 7542 2344444 5665444 5679999986
No 174
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.57 E-value=3.8e-07 Score=84.66 Aligned_cols=149 Identities=17% Similarity=0.234 Sum_probs=75.1
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHH---HHH-H
Q 007106 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEF-H 194 (618)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~---~~l-~ 194 (618)
+...++.|+.++++++...-+++.+|.|||||+.++..+++.+.+ +.-.+++|+-|..+.-+.+- -.+ .
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-------g~~~kiii~Rp~v~~~~~lGflpG~~~e 74 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE-------GEYDKIIITRPPVEAGEDLGFLPGDLEE 74 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT-------TS-SEEEEEE-S--TT----SS------
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh-------CCCcEEEEEecCCCCccccccCCCCHHH
Confidence 455789999999999977779999999999999998888888765 23457888888764311110 000 0
Q ss_pred HhCCCCcEEE-EEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhC
Q 007106 195 ESAPSLDTIC-VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (618)
Q Consensus 195 ~~~~~~~~~~-~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l 273 (618)
++.|.+.... ...........+.+.....|-+.++..+.- ..+. -.+||+|||+.+ -..+++.++.++
T Consensus 75 K~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRG------rt~~-~~~iIvDEaQN~----t~~~~k~ilTR~ 143 (205)
T PF02562_consen 75 KMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRG------RTFD-NAFIIVDEAQNL----TPEELKMILTRI 143 (205)
T ss_dssp ---TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--------B--SEEEEE-SGGG------HHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcC------cccc-ceEEEEecccCC----CHHHHHHHHccc
Confidence 0001000000 000000111122222233455555332211 1122 379999999987 567888999999
Q ss_pred CCCCcEEEEEec
Q 007106 274 PQNRQSMMFSAT 285 (618)
Q Consensus 274 ~~~~~~l~lSAT 285 (618)
..+.+++++-=.
T Consensus 144 g~~skii~~GD~ 155 (205)
T PF02562_consen 144 GEGSKIIITGDP 155 (205)
T ss_dssp -TT-EEEEEE--
T ss_pred CCCcEEEEecCc
Confidence 888888776443
No 175
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.57 E-value=4.4e-07 Score=99.02 Aligned_cols=101 Identities=12% Similarity=0.168 Sum_probs=86.0
Q ss_pred eEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCC--ccEEEEccccccCCCCCCccEEEEcCCCC
Q 007106 346 KCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGR--FNILIATDVAARGLDVPNVDLIIHYELPN 422 (618)
Q Consensus 346 ~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~--~~vLVaT~~~~~Gidi~~~~~VI~~~~p~ 422 (618)
+++||++...-+..+...|... +....+.+.|+...|.+.+..|..+. ...+++..+...|+++..+.+|+..|+.|
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 8999999888888888777533 56667789999999999999998543 23467888999999999999999999999
Q ss_pred ChhHHHHhhhccCCCCCcceEEEE
Q 007106 423 TSETFVHRTGRTGRAGKKGSAILI 446 (618)
Q Consensus 423 ~~~~~~Qr~GR~gR~g~~g~~~~~ 446 (618)
++...-|.+-|++|.|+...+.+.
T Consensus 621 np~~eeQaidR~hrigq~k~v~v~ 644 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRIGQTKPVKVS 644 (674)
T ss_pred ChHHHHHHHHHHHHhcccceeeee
Confidence 999999999999999987776663
No 176
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.55 E-value=4.4e-07 Score=85.07 Aligned_cols=123 Identities=16% Similarity=0.201 Sum_probs=74.2
Q ss_pred CChHHHHHHHHHHhCCC--CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC
Q 007106 121 KLFPIQKAVLEPAMQGR--DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~--~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~ 198 (618)
+|++-|++++..++... -++|+++.|+|||.+ +..+...+.. .+.++++++||...+..+.+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~--------~g~~v~~~apT~~Aa~~L~~~~~---- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA--------AGKRVIGLAPTNKAAKELREKTG---- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH--------TT--EEEEESSHHHHHHHHHHHT----
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh--------CCCeEEEECCcHHHHHHHHHhhC----
Confidence 37899999999997554 378899999999974 3344444433 25689999999888887666632
Q ss_pred CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCC----CCCCccEEEEchhhhhccCCcHHHHHHHHHhCC
Q 007106 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL----NLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274 (618)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~----~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~ 274 (618)
+. ..|...++........ .+...++|||||+-.+ -...+..++..++
T Consensus 68 -~~------------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv----~~~~~~~ll~~~~ 118 (196)
T PF13604_consen 68 -IE------------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMV----DSRQLARLLRLAK 118 (196)
T ss_dssp -S-------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-----BHHHHHHHHHHS-
T ss_pred -cc------------------------hhhHHHHHhcCCcccccccccCCcccEEEEeccccc----CHHHHHHHHHHHH
Confidence 11 1222222211111110 1456789999999976 4567888888887
Q ss_pred C-CCcEEEEEec
Q 007106 275 Q-NRQSMMFSAT 285 (618)
Q Consensus 275 ~-~~~~l~lSAT 285 (618)
. ..++|++-=+
T Consensus 119 ~~~~klilvGD~ 130 (196)
T PF13604_consen 119 KSGAKLILVGDP 130 (196)
T ss_dssp T-T-EEEEEE-T
T ss_pred hcCCEEEEECCc
Confidence 6 5666665433
No 177
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.52 E-value=1.5e-06 Score=84.25 Aligned_cols=171 Identities=16% Similarity=0.198 Sum_probs=108.3
Q ss_pred CCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhC----------CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCC
Q 007106 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQ----------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172 (618)
Q Consensus 103 ~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~----------~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~ 172 (618)
.+.++++++.. -.|...|-+++-.+.+ ....++-..||.||--+..-.|++..++ +
T Consensus 25 ~~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~-------G- 90 (303)
T PF13872_consen 25 RLHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR-------G- 90 (303)
T ss_pred ccCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc-------C-
Confidence 44667765532 2378889888865542 2347889999999998766666666554 1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCC-CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhc---CCCC-----
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN---ALNL----- 243 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~---~~~l----- 243 (618)
..++|++..+..|.....+.++.+.. .+.+..+.. .+.. ........||++|+..|....... ...+
T Consensus 91 r~r~vwvS~s~dL~~Da~RDl~DIG~~~i~v~~l~~-~~~~---~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~ 166 (303)
T PF13872_consen 91 RKRAVWVSVSNDLKYDAERDLRDIGADNIPVHPLNK-FKYG---DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVD 166 (303)
T ss_pred CCceEEEECChhhhhHHHHHHHHhCCCcccceechh-hccC---cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHH
Confidence 33699999999999999999998753 222322221 1111 111223479999999997664321 1111
Q ss_pred ---CCc-cEEEEchhhhhccCCc--------HHHHHHHHHhCCCCCcEEEEEecCChHHHH
Q 007106 244 ---SEV-QFVVLDEADQMLSVGF--------AEDVEVILERLPQNRQSMMFSATMPPWIRS 292 (618)
Q Consensus 244 ---~~~-~~vViDEaH~~~~~~~--------~~~~~~il~~l~~~~~~l~lSAT~~~~~~~ 292 (618)
.++ .+||+||||...+..- ...+..+-+.+ ++.+++.+|||.-.+.++
T Consensus 167 W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L-P~ARvvY~SATgasep~N 226 (303)
T PF13872_consen 167 WCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL-PNARVVYASATGASEPRN 226 (303)
T ss_pred HHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhC-CCCcEEEecccccCCCce
Confidence 222 4899999999877532 12334444555 466799999997664443
No 178
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.48 E-value=1.3e-06 Score=84.80 Aligned_cols=74 Identities=19% Similarity=0.354 Sum_probs=50.9
Q ss_pred CChHHHHHHHHHHhCCCC-EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007106 121 KLFPIQKAVLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~-~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
+|.+.|++|+..++.... .+|++|+|+|||.+.. .++..+.+.........+.++|+++|+...++++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 378899999999999888 9999999999996543 3443432100000123467899999999999999999888
No 179
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.46 E-value=5.5e-06 Score=89.23 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=42.0
Q ss_pred CCccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCC
Q 007106 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRA 437 (618)
Q Consensus 392 g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~ 437 (618)
...+.|.+-.++-+|.|-|+|=.++-+....|...=+|.+||..|.
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRL 527 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRL 527 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceee
Confidence 4578999999999999999999999998888999999999999994
No 180
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.42 E-value=7.2e-06 Score=91.74 Aligned_cols=67 Identities=7% Similarity=-0.033 Sum_probs=54.3
Q ss_pred CCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCC
Q 007106 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (618)
Q Consensus 221 ~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~ 287 (618)
...|+++||..|...+....+.+.++..|||||||++....-...+.+++..-++..-+.+|||.|.
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 4589999999999989899999999999999999998776656666666666666666777777763
No 181
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.38 E-value=2.3e-07 Score=101.33 Aligned_cols=243 Identities=18% Similarity=0.220 Sum_probs=141.7
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC--CCCcEEEEEcCcchhhh
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQ 214 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~--~~~~~~~~~g~~~~~~~ 214 (618)
.++++-+|||+|||++|.++++..+.. ....++++++|-++|+..-.+.+.+.. ++++++-+.+.....
T Consensus 944 ~~~~~g~ptgsgkt~~ae~a~~~~~~~-------~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd-- 1014 (1230)
T KOG0952|consen 944 LNFLLGAPTGSGKTVVAELAIFRALSY-------YPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPD-- 1014 (1230)
T ss_pred hhhhhcCCccCcchhHHHHHHHHHhcc-------CCCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCC--
Confidence 568899999999999999998877654 235789999999999988777776543 345566666655443
Q ss_pred hHHhhcCCCEEEEChHHHHHHHHh--cCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCC-------CCCcEEEEEec
Q 007106 215 MRALDYGVDAVVGTPGRVIDLIKR--NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-------QNRQSMMFSAT 285 (618)
Q Consensus 215 ~~~l~~~~~Ilv~T~~~l~~~l~~--~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~-------~~~~~l~lSAT 285 (618)
...+ ..++++|+||+++.....+ ..-.+++++++|+||.|.+.+. ..+.++.+..... +..+.+.+|.-
T Consensus 1015 ~~~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~s~~t~~~vr~~glsta 1092 (1230)
T KOG0952|consen 1015 VKAV-READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYISSQTEEPVRYLGLSTA 1092 (1230)
T ss_pred hhhe-ecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccCccccCcchhhhhHhhh
Confidence 1222 3479999999999877764 3345889999999999976443 4444444333322 23344444433
Q ss_pred CChHHHHHHHHhccCCceEeeccCCcccccCCeE-----EEEEeccCcchhHHHHHHHHHhccCCeEEEEecchhHHHHH
Q 007106 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS-----LYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRL 360 (618)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l 360 (618)
+.+ . ..+..++......... .....+...+. -.........+.....+.++.+.+..+++||+.++.....-
T Consensus 1093 ~~n-a-~dla~wl~~~~~~nf~-~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~p~lifv~srrqtrlt 1169 (1230)
T KOG0952|consen 1093 LAN-A-NDLADWLNIKDMYNFR-PSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIKPVLIFVSSRRQTRLT 1169 (1230)
T ss_pred hhc-c-HHHHHHhCCCCcCCCC-cccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCCceEEEeecccccccc
Confidence 322 1 2223333322221110 01111111111 11111112223334556777788889999999988765544
Q ss_pred HHHHH----cc-CCccccccCCCHHHHHHHHHHHhcCCcc
Q 007106 361 AHAMA----KS-YNCEPLHGDISQSQRERTLSAFRDGRFN 395 (618)
Q Consensus 361 ~~~L~----~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~ 395 (618)
+..|. .. -+...++-+ ..+-+.++...++...+
T Consensus 1170 a~~li~~~~~~~~p~~fl~~d--e~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1170 ALDLIASCATEDNPKQFLNMD--ELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred hHhHHhhccCCCCchhccCCC--HHHHHHHHHHhcccchh
Confidence 44332 11 223334433 66666777776665544
No 182
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.37 E-value=5.2e-06 Score=86.71 Aligned_cols=83 Identities=20% Similarity=0.282 Sum_probs=64.6
Q ss_pred HHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHH
Q 007106 113 ALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192 (618)
Q Consensus 113 ~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~ 192 (618)
.+...+..+|...|..|+.++++..-.||++|+|+|||.+... |+.++.+. ....+||++|+..-++|+++.
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~-IVyhl~~~-------~~~~VLvcApSNiAVDqLaeK 473 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ-------HAGPVLVCAPSNIAVDQLAEK 473 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHH-HHHHHHHh-------cCCceEEEcccchhHHHHHHH
Confidence 3444567788999999999999998899999999999987644 34444331 256799999999999999999
Q ss_pred HHHhCCCCcEEEE
Q 007106 193 FHESAPSLDTICV 205 (618)
Q Consensus 193 l~~~~~~~~~~~~ 205 (618)
+.+.. ++++-+
T Consensus 474 Ih~tg--LKVvRl 484 (935)
T KOG1802|consen 474 IHKTG--LKVVRL 484 (935)
T ss_pred HHhcC--ceEeee
Confidence 98763 555443
No 183
>PRK10536 hypothetical protein; Provisional
Probab=98.23 E-value=1.8e-05 Score=75.64 Aligned_cols=143 Identities=18% Similarity=0.168 Sum_probs=81.8
Q ss_pred cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHH---------
Q 007106 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK--------- 187 (618)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~--------- 187 (618)
..+...+..|...+.++.+...+++.+++|+|||+.++..+++.+.+ ..-.+++|.-|+.+..+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~-------~~~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH-------KDVDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc-------CCeeEEEEeCCCCCchhhhCcCCCCH
Confidence 45667889999999999888889999999999999887777766543 11234666666543211
Q ss_pred --HHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh-cCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHH
Q 007106 188 --QVEKEFHESAPSLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264 (618)
Q Consensus 188 --q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~ 264 (618)
...-.+.-++..+.. +.+. ......+. ..-.|-|.....+ .-. .+ +-++||||||+.+ -..
T Consensus 128 ~eK~~p~~~pi~D~L~~--~~~~---~~~~~~~~~~~~~Iei~~l~ym----RGr--tl-~~~~vIvDEaqn~----~~~ 191 (262)
T PRK10536 128 AEKFAPYFRPVYDVLVR--RLGA---SFMQYCLRPEIGKVEIAPFAYM----RGR--TF-ENAVVILDEAQNV----TAA 191 (262)
T ss_pred HHHHHHHHHHHHHHHHH--HhCh---HHHHHHHHhccCcEEEecHHHh----cCC--cc-cCCEEEEechhcC----CHH
Confidence 111111100000000 0010 00111111 1223555543222 211 12 3379999999987 357
Q ss_pred HHHHHHHhCCCCCcEEEE
Q 007106 265 DVEVILERLPQNRQSMMF 282 (618)
Q Consensus 265 ~~~~il~~l~~~~~~l~l 282 (618)
+++.++.++..+.++|++
T Consensus 192 ~~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 192 QMKMFLTRLGENVTVIVN 209 (262)
T ss_pred HHHHHHhhcCCCCEEEEe
Confidence 888899999888887764
No 184
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.22 E-value=2.4e-05 Score=85.38 Aligned_cols=143 Identities=19% Similarity=0.219 Sum_probs=90.2
Q ss_pred ChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCc
Q 007106 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD 201 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~ 201 (618)
..++|+.|+...+..+-++|.+++|+|||.+. ..++..+.+.. ......+++++||-.-|..+.+.+......+.
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~----~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~ 227 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQLA----DGERCRIRLAAPTGKAAARLTESLGKALRQLP 227 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhc----CCCCcEEEEECCcHHHHHHHHHHHHhhhhccc
Confidence 35899999999999888999999999999754 33333333311 11235789999999888888887765432221
Q ss_pred EEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHh------cCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCC
Q 007106 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR------NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275 (618)
Q Consensus 202 ~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~------~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~ 275 (618)
. . . ........-..|..+|+..... ...+...+++|||||+-++ -...+..+++.+++
T Consensus 228 ~-------~--~---~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv----d~~lm~~ll~al~~ 291 (615)
T PRK10875 228 L-------T--D---EQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV----DLPMMARLIDALPP 291 (615)
T ss_pred c-------c--h---hhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc----cHHHHHHHHHhccc
Confidence 1 0 0 0011111223444444322111 1112335689999999965 35677888899999
Q ss_pred CCcEEEEEec
Q 007106 276 NRQSMMFSAT 285 (618)
Q Consensus 276 ~~~~l~lSAT 285 (618)
..++|++-=.
T Consensus 292 ~~rlIlvGD~ 301 (615)
T PRK10875 292 HARVIFLGDR 301 (615)
T ss_pred CCEEEEecch
Confidence 9988887433
No 185
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.20 E-value=0.00019 Score=79.34 Aligned_cols=68 Identities=21% Similarity=0.168 Sum_probs=54.1
Q ss_pred CCChHHHHHHHHHHhCC-CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007106 120 SKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~-~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
..|.+.|++|+..++.. ..++|++|+|+|||.+....+.+.+.. +.++|+++||..-+.++.+.+.+.
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~---------g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR---------GLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc---------CCCEEEEcCcHHHHHHHHHHHHhC
Confidence 35799999999998876 568999999999997654444333322 568999999999999999998763
No 186
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.17 E-value=1e-05 Score=84.38 Aligned_cols=66 Identities=26% Similarity=0.293 Sum_probs=54.8
Q ss_pred CCChHHHHHHHHHHhCCCC-EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007106 120 SKLFPIQKAVLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~-~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~ 194 (618)
+.+.+-|+.|+......++ .++++|+|+|||.+....+.+.+.+ +.++||++||.+-+..+.+++.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~---------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ---------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc---------CCeEEEEcCchHHHHHHHHHhc
Confidence 4578899999999888865 7899999999998876666666544 6789999999999999988643
No 187
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.15 E-value=1e-05 Score=83.56 Aligned_cols=108 Identities=15% Similarity=0.190 Sum_probs=67.6
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHH
Q 007106 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 217 (618)
-+||.+.+|||||++++-.+. .+.. ...+..++++|++..|...+.+.+.+...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~-~l~~------~~~~~~~~~l~~n~~l~~~l~~~l~~~~~------------------- 56 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAK-ELQN------SEEGKKVLYLCGNHPLRNKLREQLAKKYN------------------- 56 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHH-Hhhc------cccCCceEEEEecchHHHHHHHHHhhhcc-------------------
Confidence 478999999999987644333 3210 12366899999999999988888876430
Q ss_pred hhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCC-------cHHHHHHHHHh
Q 007106 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-------FAEDVEVILER 272 (618)
Q Consensus 218 l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~-------~~~~~~~il~~ 272 (618)
.......+..+..+...+.........+++|||||||++.... ...++..++..
T Consensus 57 -~~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 57 -PKLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred -cchhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0001223344444443333222346789999999999987621 23455555555
No 188
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.14 E-value=2.2e-05 Score=73.54 Aligned_cols=126 Identities=16% Similarity=0.298 Sum_probs=81.3
Q ss_pred CccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhC---CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeE
Q 007106 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQ---GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (618)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~---~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~ 176 (618)
+|+....|..++-.+. .++. +++.|.++...+.+ +.+.+.+.-||.|||.+ ++|++..++.. ....+
T Consensus 4 ~w~p~~~P~wLl~E~e-~~il-iR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd-------g~~Lv 73 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIE-SNIL-IRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD-------GSRLV 73 (229)
T ss_pred CCCchhChHHHHHHHH-cCce-eeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC-------CCcEE
Confidence 4566666676664443 3333 89999999988876 46899999999999975 57877777651 23467
Q ss_pred EEEcCcHHHHHHHHHHHHHhCCCC---cEEEEE--cCcchh----hhh----HHhhcCCCEEEEChHHHHHHH
Q 007106 177 LVLAPTRELAKQVEKEFHESAPSL---DTICVY--GGTPIS----HQM----RALDYGVDAVVGTPGRVIDLI 236 (618)
Q Consensus 177 lil~Pt~~La~q~~~~l~~~~~~~---~~~~~~--g~~~~~----~~~----~~l~~~~~Ilv~T~~~l~~~l 236 (618)
.+++| ++|..|..+.+...+..+ ++..+. -..... ... +.....-.|+++||+.++.+.
T Consensus 74 rviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~ 145 (229)
T PF12340_consen 74 RVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFK 145 (229)
T ss_pred EEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHH
Confidence 78888 589999998887755322 122111 111111 111 112234579999999986543
No 189
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.13 E-value=1.1e-05 Score=73.53 Aligned_cols=104 Identities=20% Similarity=0.348 Sum_probs=71.7
Q ss_pred CCeEEEEecchhHHHHHHHHHHccC---CccccccCCCHHHHHHHHHHHhcCCccEEEEcc--ccccCCCCCC--ccEEE
Q 007106 344 GGKCIVFTQTKRDADRLAHAMAKSY---NCEPLHGDISQSQRERTLSAFRDGRFNILIATD--VAARGLDVPN--VDLII 416 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~~~---~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~--~~~~Gidi~~--~~~VI 416 (618)
++.+|||+++.+..+.+.+.+.... ...++.. ...++..+++.|++++..||+++. .+.+|||+++ ++.||
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vi 86 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVI 86 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheee
Confidence 4799999999999999999886542 2233333 356788999999999999999998 9999999997 77899
Q ss_pred EcCCCC-Chh-----------------------------HHHHhhhccCCCCCcceEEEEecc
Q 007106 417 HYELPN-TSE-----------------------------TFVHRTGRTGRAGKKGSAILIYTD 449 (618)
Q Consensus 417 ~~~~p~-~~~-----------------------------~~~Qr~GR~gR~g~~g~~~~~~~~ 449 (618)
+...|. ++. ...|.+||+-|..++--++++++.
T Consensus 87 i~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 87 IVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 988875 121 124999999998665444455544
No 190
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.11 E-value=4.3e-05 Score=83.30 Aligned_cols=142 Identities=20% Similarity=0.225 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcE
Q 007106 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT 202 (618)
Q Consensus 123 ~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~ 202 (618)
.++|+.|+..++..+-++|.++.|+|||.+. ..++..+.+.... ....++++++||-.-|..+.+.+......+..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~~---~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~ 222 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSPK---QGKLRIALAAPTGKAAARLAESLRKAVKNLAA 222 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhccc---cCCCcEEEECCcHHHHHHHHHHHHhhhccccc
Confidence 3799999999999888999999999999754 3344433331111 01257999999988888877777654322211
Q ss_pred EEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHh------cCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCC
Q 007106 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR------NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (618)
Q Consensus 203 ~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~------~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~ 276 (618)
. . .......+-..|..+|+..... ...+...+++|||||+-++ -...+..+++.+++.
T Consensus 223 ~--------~----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv----d~~l~~~ll~al~~~ 286 (586)
T TIGR01447 223 A--------E----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV----DLPLMAKLLKALPPN 286 (586)
T ss_pred c--------h----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC----CHHHHHHHHHhcCCC
Confidence 0 0 0111112234555555432211 1112346799999999965 356778888999888
Q ss_pred CcEEEEEe
Q 007106 277 RQSMMFSA 284 (618)
Q Consensus 277 ~~~l~lSA 284 (618)
.++|++-=
T Consensus 287 ~rlIlvGD 294 (586)
T TIGR01447 287 TKLILLGD 294 (586)
T ss_pred CEEEEECC
Confidence 88887643
No 191
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.10 E-value=4e-05 Score=85.99 Aligned_cols=131 Identities=21% Similarity=0.216 Sum_probs=82.0
Q ss_pred HHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007106 114 LARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (618)
Q Consensus 114 l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l 193 (618)
+....-..+++.|++|+..+...+-++|.+++|+|||.+. ..++..+... +....+++++||-.-|..+.+..
T Consensus 316 ~~~~~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~------~~~~~v~l~ApTg~AA~~L~e~~ 388 (720)
T TIGR01448 316 VEKKLRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL------GGLLPVGLAAPTGRAAKRLGEVT 388 (720)
T ss_pred HHHhcCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc------CCCceEEEEeCchHHHHHHHHhc
Confidence 3333345699999999999998888999999999999743 3444433221 11156888999977776544332
Q ss_pred HHhCCCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHh-----cCCCCCCccEEEEchhhhhccCCcHHHHHH
Q 007106 194 HESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-----NALNLSEVQFVVLDEADQMLSVGFAEDVEV 268 (618)
Q Consensus 194 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~-----~~~~l~~~~~vViDEaH~~~~~~~~~~~~~ 268 (618)
. .. ..|..+++..... ..-.....++|||||++++. ...+..
T Consensus 389 g-----~~------------------------a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~ 435 (720)
T TIGR01448 389 G-----LT------------------------ASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALS 435 (720)
T ss_pred C-----Cc------------------------cccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHH
Confidence 1 10 0122222211000 00012357899999999763 456677
Q ss_pred HHHhCCCCCcEEEEEe
Q 007106 269 ILERLPQNRQSMMFSA 284 (618)
Q Consensus 269 il~~l~~~~~~l~lSA 284 (618)
++..++...++|++-=
T Consensus 436 Ll~~~~~~~rlilvGD 451 (720)
T TIGR01448 436 LLAALPDHARLLLVGD 451 (720)
T ss_pred HHHhCCCCCEEEEECc
Confidence 8888888888887643
No 192
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.04 E-value=3.2e-05 Score=83.88 Aligned_cols=140 Identities=19% Similarity=0.206 Sum_probs=89.1
Q ss_pred CCCChHHHHHHHHHHh----CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhh---------c-------C---------
Q 007106 119 ISKLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK---------H-------G--------- 169 (618)
Q Consensus 119 ~~~l~~~Q~~~i~~i~----~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~---------~-------~--------- 169 (618)
+++|++.|...+..++ ...+.++..|||+|||+..|-..|......... . +
T Consensus 19 P~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~ 98 (945)
T KOG1132|consen 19 PFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSE 98 (945)
T ss_pred cCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchh
Confidence 4668999987766554 457899999999999987665555544332210 0 0
Q ss_pred --C------CCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcc--h----------------------------
Q 007106 170 --R------GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTP--I---------------------------- 211 (618)
Q Consensus 170 --~------~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~--~---------------------------- 211 (618)
. -..+++.+-.-|-....|+.+++++....++.+++-.-.. +
T Consensus 99 e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~f 178 (945)
T KOG1132|consen 99 EAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRVKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCHF 178 (945)
T ss_pred hhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCCCceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccccccc
Confidence 0 1145677777788888999999987654344333211000 0
Q ss_pred ----------------hh------------------hhHHhhcCCCEEEEChHHHHHHHHhcCCCCC-CccEEEEchhhh
Q 007106 212 ----------------SH------------------QMRALDYGVDAVVGTPGRVIDLIKRNALNLS-EVQFVVLDEADQ 256 (618)
Q Consensus 212 ----------------~~------------------~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~-~~~~vViDEaH~ 256 (618)
.. ..+.+...++||+|-+..|++-..+....++ .-.+||+||||.
T Consensus 179 ~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~LknsIVIfDEAHN 258 (945)
T KOG1132|consen 179 YKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKNSIVIFDEAHN 258 (945)
T ss_pred cccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccccEEEEecccc
Confidence 00 0122344799999999999887766553321 236899999998
Q ss_pred hc
Q 007106 257 ML 258 (618)
Q Consensus 257 ~~ 258 (618)
+-
T Consensus 259 iE 260 (945)
T KOG1132|consen 259 IE 260 (945)
T ss_pred HH
Confidence 74
No 193
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=98.01 E-value=8.5e-05 Score=71.38 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=17.4
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHhCC
Q 007106 108 QDIVAALARRGISKLFPIQKAVLEPAMQG 136 (618)
Q Consensus 108 ~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~ 136 (618)
-.|++.|+..+|.-+..-|...-.++.++
T Consensus 6 ~~lvdslk~l~~qg~~~k~~~lsral~ag 34 (465)
T KOG3973|consen 6 LYLVDSLKALSFQGHCQKQENLSRALMAG 34 (465)
T ss_pred HHHHHHHHHhccCCcccchhhHHHHHHcC
Confidence 45666777777766666665555555543
No 194
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.86 E-value=0.00012 Score=76.11 Aligned_cols=140 Identities=19% Similarity=0.219 Sum_probs=74.2
Q ss_pred EEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC--C-CcEEEEEcCcchh----h
Q 007106 141 GRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--S-LDTICVYGGTPIS----H 213 (618)
Q Consensus 141 l~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~--~-~~~~~~~g~~~~~----~ 213 (618)
..++||||||+++...|+....+. -...|+.|......+.....+..-.. . ..-.+.+++..+. .
T Consensus 2 f~matgsgkt~~ma~lil~~y~kg--------yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn 73 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKG--------YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVN 73 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhc--------hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeec
Confidence 467899999998766666665441 22477777766666655544422110 0 0000111111100 0
Q ss_pred hhHHhhcCCCEEEEChHHHHHHHHhc---CCC---CCCcc-EEEEchhhhhccCC---------cHHHHHHHH-HhCC--
Q 007106 214 QMRALDYGVDAVVGTPGRVIDLIKRN---ALN---LSEVQ-FVVLDEADQMLSVG---------FAEDVEVIL-ERLP-- 274 (618)
Q Consensus 214 ~~~~l~~~~~Ilv~T~~~l~~~l~~~---~~~---l~~~~-~vViDEaH~~~~~~---------~~~~~~~il-~~l~-- 274 (618)
..........|+++|.+.|...+.+. .+. +.+.. +++-||+|++.... ....++..+ ..+.
T Consensus 74 ~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~n 153 (812)
T COG3421 74 NFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQN 153 (812)
T ss_pred ccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcC
Confidence 01113345789999999998777543 232 33344 45679999985421 112222222 1222
Q ss_pred CCCcEEEEEecCCh
Q 007106 275 QNRQSMMFSATMPP 288 (618)
Q Consensus 275 ~~~~~l~lSAT~~~ 288 (618)
++.-++.+|||.|+
T Consensus 154 kd~~~lef~at~~k 167 (812)
T COG3421 154 KDNLLLEFSATIPK 167 (812)
T ss_pred CCceeehhhhcCCc
Confidence 33446778999984
No 195
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.86 E-value=0.00024 Score=81.30 Aligned_cols=124 Identities=17% Similarity=0.064 Sum_probs=77.5
Q ss_pred CCChHHHHHHHHHHhCCCC-EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC
Q 007106 120 SKLFPIQKAVLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~-~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~ 198 (618)
..|++-|++++..++...+ ++|++..|+|||.+ +-++...+.. .+.+++.++||-..+..+.+..
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~--------~G~~V~~~ApTGkAA~~L~e~t----- 410 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA--------AGYEVRGAALSGIAAENLEGGS----- 410 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH--------cCCeEEEecCcHHHHHHHhhcc-----
Confidence 3599999999999998654 78999999999975 3333333321 2678999999966654443211
Q ss_pred CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhC-CCCC
Q 007106 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNR 277 (618)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l-~~~~ 277 (618)
++ --.|..+|+.-.......+...++|||||+-++. ...+..++... +...
T Consensus 411 Gi------------------------~a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~----~~~m~~LL~~a~~~ga 462 (988)
T PRK13889 411 GI------------------------ASRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG----TRQLERVLSHAADAGA 462 (988)
T ss_pred Cc------------------------chhhHHHHHhhhcccccccccCcEEEEECcccCC----HHHHHHHHHhhhhCCC
Confidence 01 0113333322222223345677899999999763 44556666544 4567
Q ss_pred cEEEEEec
Q 007106 278 QSMMFSAT 285 (618)
Q Consensus 278 ~~l~lSAT 285 (618)
++|++-=+
T Consensus 463 rvVLVGD~ 470 (988)
T PRK13889 463 KVVLVGDP 470 (988)
T ss_pred EEEEECCH
Confidence 77776433
No 196
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.83 E-value=0.00012 Score=72.13 Aligned_cols=146 Identities=18% Similarity=0.276 Sum_probs=87.5
Q ss_pred cCCCCChHHHHHHHHHHhCCCC--EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHH----
Q 007106 117 RGISKLFPIQKAVLEPAMQGRD--MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---- 190 (618)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~--~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~---- 190 (618)
.++......|.-|++.++...- +.+.++.|||||+.++.+.+...+... ...++||.-|+..+-+.+-
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~------~y~KiiVtRp~vpvG~dIGfLPG 297 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK------RYRKIIVTRPTVPVGEDIGFLPG 297 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh------hhceEEEecCCcCcccccCcCCC
Confidence 3667677889999999887643 788999999999999888888776522 2446888888755442220
Q ss_pred HHHHHhCCCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCC----------ccEEEEchhhhhccC
Q 007106 191 KEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSE----------VQFVVLDEADQMLSV 260 (618)
Q Consensus 191 ~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~----------~~~vViDEaH~~~~~ 260 (618)
.+-.|+.|.+. +..+..+.+. ..-=++.+.|...+.+..+.+.. -.+||||||+.+
T Consensus 298 ~eEeKm~PWmq--------~i~DnLE~L~---~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL--- 363 (436)
T COG1875 298 TEEEKMGPWMQ--------AIFDNLEVLF---SPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL--- 363 (436)
T ss_pred chhhhccchHH--------HHHhHHHHHh---cccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc---
Confidence 00000000000 0011111111 11112344444454444333222 258999999987
Q ss_pred CcHHHHHHHHHhCCCCCcEEEEE
Q 007106 261 GFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 261 ~~~~~~~~il~~l~~~~~~l~lS 283 (618)
-..+++.++.+..+..+++++.
T Consensus 364 -TpheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 364 -TPHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred -CHHHHHHHHHhccCCCEEEEcC
Confidence 5678899999998888877753
No 197
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.78 E-value=0.00041 Score=78.30 Aligned_cols=122 Identities=15% Similarity=0.108 Sum_probs=75.5
Q ss_pred CCChHHHHHHHHHHhCC-CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC
Q 007106 120 SKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~-~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~ 198 (618)
..|++-|++|+..++.. +-++|+++.|+|||.+. -++...+.. .+..+++++||-..+..+.+..
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~--------~g~~V~~~ApTg~Aa~~L~~~~----- 416 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEA--------AGYRVIGAALSGKAAEGLQAES----- 416 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHh--------CCCeEEEEeCcHHHHHHHHhcc-----
Confidence 45899999999998874 55899999999999643 333333221 2678999999966665543321
Q ss_pred CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhC-CCCC
Q 007106 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNR 277 (618)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l-~~~~ 277 (618)
++. -.|..+++..+......+...++|||||+-++. ...+..++... +...
T Consensus 417 g~~------------------------a~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~----~~~~~~Ll~~~~~~~~ 468 (744)
T TIGR02768 417 GIE------------------------SRTLASLEYAWANGRDLLSDKDVLVIDEAGMVG----SRQMARVLKEAEEAGA 468 (744)
T ss_pred CCc------------------------eeeHHHHHhhhccCcccCCCCcEEEEECcccCC----HHHHHHHHHHHHhcCC
Confidence 111 113333322222223335678999999999763 33445555533 3466
Q ss_pred cEEEEE
Q 007106 278 QSMMFS 283 (618)
Q Consensus 278 ~~l~lS 283 (618)
++|++-
T Consensus 469 kliLVG 474 (744)
T TIGR02768 469 KVVLVG 474 (744)
T ss_pred EEEEEC
Confidence 666664
No 198
>PF13245 AAA_19: Part of AAA domain
Probab=97.76 E-value=0.00012 Score=56.62 Aligned_cols=60 Identities=27% Similarity=0.379 Sum_probs=40.9
Q ss_pred HHHHHhCC-CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007106 129 VLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (618)
Q Consensus 129 ~i~~i~~~-~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l 193 (618)
++...+.+ .-++|.+++|||||.+.+-.+...+..+ ... +..+++++|++..++++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~----~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAAR----ADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHh----cCC-CCeEEEECCCHHHHHHHHHHH
Confidence 34433333 3466699999999976655554444221 112 557999999999999998888
No 199
>PRK04296 thymidine kinase; Provisional
Probab=97.67 E-value=0.00011 Score=68.57 Aligned_cols=107 Identities=19% Similarity=0.164 Sum_probs=55.9
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc---HHHHHHHHHHHHHhCCCCcEEEEEcCcchhhh
Q 007106 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT---RELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt---~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~ 214 (618)
-.++.+++|+|||..++-.+..... .+.+++++-|. +....++... + +...
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~---------~g~~v~i~k~~~d~~~~~~~i~~~-------l-------g~~~--- 57 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEE---------RGMKVLVFKPAIDDRYGEGKVVSR-------I-------GLSR--- 57 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHH---------cCCeEEEEeccccccccCCcEecC-------C-------CCcc---
Confidence 3688999999999765544443322 25678888663 1111111000 0 0000
Q ss_pred hHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEe
Q 007106 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (618)
Q Consensus 215 ~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSA 284 (618)
..+.+.....+.+.+.. .-.++++|||||+|.+. ..++..+++.+.+.-..+++++
T Consensus 58 -------~~~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tg 113 (190)
T PRK04296 58 -------EAIPVSSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYG 113 (190)
T ss_pred -------cceEeCChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEe
Confidence 00223445555555544 23568899999999642 3445666666443333344443
No 200
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.65 E-value=0.001 Score=76.74 Aligned_cols=137 Identities=19% Similarity=0.155 Sum_probs=83.3
Q ss_pred CCHHHHHHHHHcCCCCChHHHHHHHHHHhC-CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHH
Q 007106 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (618)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~-~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~ 184 (618)
+++..++..... -..|++-|++++..+.. ++-++|++..|+|||.+. -++...+.. .+.+++.++||-.
T Consensus 367 v~~~~l~a~~~~-~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~--------~G~~V~g~ApTgk 436 (1102)
T PRK13826 367 VREAVLAATFAR-HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEA--------AGYRVVGGALAGK 436 (1102)
T ss_pred CCHHHHHHHHhc-CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHH--------cCCeEEEEcCcHH
Confidence 344444443333 34699999999998864 445899999999999643 344433322 2678999999966
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHH
Q 007106 185 LAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264 (618)
Q Consensus 185 La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~ 264 (618)
-+..+.+.. ++. -.|..+++.........+..-++|||||+.++ -..
T Consensus 437 AA~~L~e~~-----Gi~------------------------a~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv----~~~ 483 (1102)
T PRK13826 437 AAEGLEKEA-----GIQ------------------------SRTLSSWELRWNQGRDQLDNKTVFVLDEAGMV----ASR 483 (1102)
T ss_pred HHHHHHHhh-----CCC------------------------eeeHHHHHhhhccCccCCCCCcEEEEECcccC----CHH
Confidence 665543322 111 12333322111122233566789999999976 345
Q ss_pred HHHHHHHhCC-CCCcEEEEEec
Q 007106 265 DVEVILERLP-QNRQSMMFSAT 285 (618)
Q Consensus 265 ~~~~il~~l~-~~~~~l~lSAT 285 (618)
.+..++.... ...++|++.=+
T Consensus 484 ~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 484 QMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHHHhcCCEEEEECCH
Confidence 6667777664 46777776443
No 201
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.57 E-value=0.00038 Score=76.53 Aligned_cols=125 Identities=17% Similarity=0.145 Sum_probs=80.2
Q ss_pred CCChHHHHHHHHHHhCCCC-EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC
Q 007106 120 SKLFPIQKAVLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~-~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~ 198 (618)
..|..-|++|+..++.-+| .||.+=+|+|||.+....+-..+.. +.++|+.+-|..-+..+.-.++...
T Consensus 668 ~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~---------gkkVLLtsyThsAVDNILiKL~~~~- 737 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVAL---------GKKVLLTSYTHSAVDNILIKLKGFG- 737 (1100)
T ss_pred hhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHc---------CCeEEEEehhhHHHHHHHHHHhccC-
Confidence 4588899999998887766 7899999999997654333222222 6789999999888888887777542
Q ss_pred CCcEEEEEcCcchhh-----------------hhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhcc
Q 007106 199 SLDTICVYGGTPISH-----------------QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (618)
Q Consensus 199 ~~~~~~~~g~~~~~~-----------------~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~ 259 (618)
+.+.-+-......+ ..+..-+...||.||-=-+.+.+ +..+.++++|||||-.+..
T Consensus 738 -i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl----f~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 738 -IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL----FVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred -cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh----hhccccCEEEEcccccccc
Confidence 22111111111111 11222245778888854444333 2356799999999997743
No 202
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.46 E-value=0.00035 Score=78.76 Aligned_cols=154 Identities=19% Similarity=0.129 Sum_probs=95.2
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHh---------hhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCC-cEEEE
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFN---------EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL-DTICV 205 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~---------~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~-~~~~~ 205 (618)
++++++...+|.|||..-+...+...-+.. ..........+|||||. ++..||++++.+..+.. ++...
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~lKv~~Y 452 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSLLKVLLY 452 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccccceEEEE
Confidence 356899999999999876554443321100 01112234569999995 88899999999988765 55554
Q ss_pred EcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcC--------------CC----CC--CccEEEEchhhhhccCCcHHH
Q 007106 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA--------------LN----LS--EVQFVVLDEADQMLSVGFAED 265 (618)
Q Consensus 206 ~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~--------------~~----l~--~~~~vViDEaH~~~~~~~~~~ 265 (618)
.|-..........-..+|||+||++.|...+.... .. +- .|=-|++|||+++-. -...
T Consensus 453 ~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS~ 530 (1394)
T KOG0298|consen 453 FGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSSA 530 (1394)
T ss_pred echhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHHH
Confidence 44433222222222358999999999976553321 00 11 122579999996644 3455
Q ss_pred HHHHHHhCCCCCcEEEEEecCChHHHHH
Q 007106 266 VEVILERLPQNRQSMMFSATMPPWIRSL 293 (618)
Q Consensus 266 ~~~il~~l~~~~~~l~lSAT~~~~~~~~ 293 (618)
..+.+.+++ ....-..|.||...+..+
T Consensus 531 ~a~M~~rL~-~in~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 531 AAEMVRRLH-AINRWCVTGTPIQKIDDL 557 (1394)
T ss_pred HHHHHHHhh-hhceeeecCCchhhhhhh
Confidence 555666664 456788899986654443
No 203
>PRK08181 transposase; Validated
Probab=97.41 E-value=0.0019 Score=63.36 Aligned_cols=109 Identities=13% Similarity=0.069 Sum_probs=58.6
Q ss_pred HHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcch
Q 007106 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPI 211 (618)
Q Consensus 132 ~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~ 211 (618)
.+..++++++.+|+|+|||..+... ...+.+ .+..++++ +..+|..++.....+
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~Ai-a~~a~~--------~g~~v~f~-~~~~L~~~l~~a~~~---------------- 155 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAI-GLALIE--------NGWRVLFT-RTTDLVQKLQVARRE---------------- 155 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHHH-HHHHHH--------cCCceeee-eHHHHHHHHHHHHhC----------------
Confidence 3446678999999999999755433 333322 13445444 445565554322110
Q ss_pred hhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCC-cHHHHHHHHHhCCCCCcEEEEEecCCh
Q 007106 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQNRQSMMFSATMPP 288 (618)
Q Consensus 212 ~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~-~~~~~~~il~~l~~~~~~l~lSAT~~~ 288 (618)
.+.+.++.. +..+++|||||.+...... ....+..++........+|+.|-.++.
T Consensus 156 ---------------~~~~~~l~~-------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~ 211 (269)
T PRK08181 156 ---------------LQLESAIAK-------LDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFG 211 (269)
T ss_pred ---------------CcHHHHHHH-------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHH
Confidence 122222222 4567899999999654322 223445555544334556665555544
No 204
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.41 E-value=7.2e-06 Score=88.59 Aligned_cols=74 Identities=19% Similarity=0.399 Sum_probs=59.1
Q ss_pred HHHHHHHHh-ccCCeEEEEecchhHHHHHHHHHHccCCccccccCCCHHHHHHHHHHHhc---CCccEEEEccccccC
Q 007106 333 IIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD---GRFNILIATDVAARG 406 (618)
Q Consensus 333 ~l~~ll~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~i~~~f~~---g~~~vLVaT~~~~~G 406 (618)
+|...++.. ..+++|+||...+...+.+.+++........+.|...-.+|+..+++|+. .+...|++|.+.+.|
T Consensus 619 ~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 619 LLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEGKYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccCcceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 333443333 45789999999999999999999766678889999999999999999983 457789999876654
No 205
>PRK06526 transposase; Provisional
Probab=97.38 E-value=0.00074 Score=65.80 Aligned_cols=110 Identities=11% Similarity=0.015 Sum_probs=58.5
Q ss_pred HHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcc
Q 007106 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTP 210 (618)
Q Consensus 131 ~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~ 210 (618)
+.+....++++.+|+|+|||..+.......+ + .+.+++++.. ..|+++ +.....
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~-~--------~g~~v~f~t~-~~l~~~----l~~~~~------------ 146 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRAC-Q--------AGHRVLFATA-AQWVAR----LAAAHH------------ 146 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHH-H--------CCCchhhhhH-HHHHHH----HHHHHh------------
Confidence 4455667899999999999986644333332 2 1445555433 234333 321100
Q ss_pred hhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCC-cHHHHHHHHHhCCCCCcEEEEEecCCh
Q 007106 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQNRQSMMFSATMPP 288 (618)
Q Consensus 211 ~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~-~~~~~~~il~~l~~~~~~l~lSAT~~~ 288 (618)
..+.. ..+.. +..+++|||||+|.+.... ....+..++........+|+.|..++.
T Consensus 147 ---------------~~~~~---~~l~~----l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~ 203 (254)
T PRK06526 147 ---------------AGRLQ---AELVK----LGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFG 203 (254)
T ss_pred ---------------cCcHH---HHHHH----hccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHH
Confidence 01111 11221 3467899999999753221 123344555443334557777777655
No 206
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=97.36 E-value=0.0021 Score=62.06 Aligned_cols=10 Identities=30% Similarity=0.365 Sum_probs=4.8
Q ss_pred HHHHHHHHHh
Q 007106 381 QRERTLSAFR 390 (618)
Q Consensus 381 ~r~~i~~~f~ 390 (618)
.+++|+..|.
T Consensus 241 ~~~ei~~~~~ 250 (465)
T KOG3973|consen 241 HREEIQSILS 250 (465)
T ss_pred HHHHHHHHHH
Confidence 3445555554
No 207
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.32 E-value=0.00073 Score=58.77 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=12.5
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
...++|.|++|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 346899999999999754
No 208
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.30 E-value=0.012 Score=73.29 Aligned_cols=238 Identities=14% Similarity=0.158 Sum_probs=126.3
Q ss_pred CCChHHHHHHHHHHhCC--CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC
Q 007106 120 SKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~--~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
..|++-|++++..++.. +-.+|+++.|+|||.+ +-.++..+ + ..+..+++++||-.-+..+.+......
T Consensus 428 ~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~-~-------~~G~~V~~lAPTgrAA~~L~e~~g~~A 498 (1960)
T TIGR02760 428 FALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLA-S-------EQGYEIQIITAGSLSAQELRQKIPRLA 498 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHH-H-------hcCCeEEEEeCCHHHHHHHHHHhcchh
Confidence 35899999999998876 4589999999999964 23333332 2 136789999999877766665532110
Q ss_pred CCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhC-CCC
Q 007106 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQN 276 (618)
Q Consensus 198 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l-~~~ 276 (618)
.....+...+.. ..-..|...++ .....+..-++|||||+-++ -...+..++... +.+
T Consensus 499 -----------~Ti~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl----~~~~~~~Ll~~a~~~g 557 (1960)
T TIGR02760 499 -----------STFITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKL----SNNELLKLIDKAEQHN 557 (1960)
T ss_pred -----------hhHHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCC----CHHHHHHHHHHHhhcC
Confidence 011111111111 11122333333 12233456789999999976 346677777765 467
Q ss_pred CcEEEEEec--CCh----HHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchh-HHHHHHHHHhccCCeEEE
Q 007106 277 RQSMMFSAT--MPP----WIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP-SIIGQLITEHAKGGKCIV 349 (618)
Q Consensus 277 ~~~l~lSAT--~~~----~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~l~~ll~~~~~~~~~lV 349 (618)
.++|++-=+ ++. .+..++... ....+.+...... ...+ .........+. .+...++.......+++|
T Consensus 558 arvVlvGD~~QL~sV~aG~~f~~L~~~--gv~t~~l~~i~rq--~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tli 631 (1960)
T TIGR02760 558 SKLILLNDSAQRQGMSAGSAIDLLKEG--GVTTYAWVDTKQQ--KASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQV 631 (1960)
T ss_pred CEEEEEcChhhcCccccchHHHHHHHC--CCcEEEeeccccc--Ccce--eeeccCchHHHHHHHHHHHhcccccCceEE
Confidence 888877544 221 222233322 1122222111111 1111 11111111222 233333333333446899
Q ss_pred EecchhHHHHHHHHHHccC-----------Ccccc-ccCCCHHHHHHHHHHHhcCCc
Q 007106 350 FTQTKRDADRLAHAMAKSY-----------NCEPL-HGDISQSQRERTLSAFRDGRF 394 (618)
Q Consensus 350 f~~~~~~~~~l~~~L~~~~-----------~~~~l-hg~~~~~~r~~i~~~f~~g~~ 394 (618)
+..+.++...|....+..+ .+..+ -..++..++.. ...|+.|..
T Consensus 632 v~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~-~~~Yr~Gdv 687 (1960)
T TIGR02760 632 LATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRN-AAHYKQGMV 687 (1960)
T ss_pred EcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhh-HhhcCCCCE
Confidence 9999999888887765422 11122 23566666663 366666653
No 209
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.30 E-value=0.0027 Score=56.03 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=15.2
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
...+++.+++|+|||..+
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999643
No 210
>PHA02533 17 large terminase protein; Provisional
Probab=97.21 E-value=0.0022 Score=69.18 Aligned_cols=146 Identities=16% Similarity=0.110 Sum_probs=84.6
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC
Q 007106 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~ 199 (618)
+.|.|+|++.+..+...+-.++..+=-.|||.++...++..... ..+..+++++|+...|..+++.++.+...
T Consensus 58 f~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~-------~~~~~v~i~A~~~~QA~~vF~~ik~~ie~ 130 (534)
T PHA02533 58 VQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF-------NKDKNVGILAHKASMAAEVLDRTKQAIEL 130 (534)
T ss_pred cCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh-------CCCCEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 56899999999887655556788889999998766544433322 12558999999999999999888765422
Q ss_pred Cc----EEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCC
Q 007106 200 LD----TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275 (618)
Q Consensus 200 ~~----~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~ 275 (618)
.. ..+... ......+.++..|.+.|.. .....=.+++++|+||+|.+.+ +...+..+...+..
T Consensus 131 ~P~l~~~~i~~~----~~~~I~l~NGS~I~~lss~-------~~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~las 197 (534)
T PHA02533 131 LPDFLQPGIVEW----NKGSIELENGSKIGAYASS-------PDAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISS 197 (534)
T ss_pred CHHHhhcceeec----CccEEEeCCCCEEEEEeCC-------CCccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHc
Confidence 11 111000 0111122445555554421 1111223567899999997643 33333444333332
Q ss_pred --CCcEEEEEec
Q 007106 276 --NRQSMMFSAT 285 (618)
Q Consensus 276 --~~~~l~lSAT 285 (618)
..+++++|++
T Consensus 198 g~~~r~iiiSTp 209 (534)
T PHA02533 198 GRSSKIIITSTP 209 (534)
T ss_pred CCCceEEEEECC
Confidence 2344444444
No 211
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.17 E-value=0.00094 Score=64.92 Aligned_cols=59 Identities=25% Similarity=0.442 Sum_probs=50.7
Q ss_pred HHHHHHhcCCccEEEEccccccCCCCCC--------ccEEEEcCCCCChhHHHHhhhccCCCCCcce
Q 007106 384 RTLSAFRDGRFNILIATDVAARGLDVPN--------VDLIIHYELPNTSETFVHRTGRTGRAGKKGS 442 (618)
Q Consensus 384 ~i~~~f~~g~~~vLVaT~~~~~Gidi~~--------~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~ 442 (618)
...+.|.+|+.+|+|.+++.+.||.+.. -++.|.+.+||+....+|..||++|.++...
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~ 118 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSA 118 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccC
Confidence 4567899999999999999999998753 3467889999999999999999999987443
No 212
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.17 E-value=0.00091 Score=69.24 Aligned_cols=59 Identities=29% Similarity=0.403 Sum_probs=42.5
Q ss_pred ChHHHHHHHHHH------hCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHH
Q 007106 122 LFPIQKAVLEPA------MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (618)
Q Consensus 122 l~~~Q~~~i~~i------~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~ 189 (618)
|++-|+++++.+ .++..+.|.++-|+|||+++ -.+...+ . ..+..+++++||-.-|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~-~~i~~~~-~-------~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI-KAIIDYL-R-------SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH-HHHHHHh-c-------cccceEEEecchHHHHHhc
Confidence 678899998887 56678999999999999743 2222222 2 1356799999997666655
No 213
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.10 E-value=0.0097 Score=61.48 Aligned_cols=130 Identities=13% Similarity=0.121 Sum_probs=67.2
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEE-cC-cHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhh
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL-AP-TRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil-~P-t~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~ 214 (618)
..+++.+|||+|||.++.-.+........ ..+.++.++ +- .+.-+..+...+.+.. ++.+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~-----~~g~~V~lit~Dt~R~aa~eQL~~~a~~l-gvpv------------ 236 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSD-----DKSLNIKIITIDNYRIGAKKQIQTYGDIM-GIPV------------ 236 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhc-----cCCCeEEEEeccCccHHHHHHHHHHhhcC-Ccce------------
Confidence 35889999999999876433322221100 013334443 33 3343433333333221 1111
Q ss_pred hHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCC-cHHHHHHHHHhCCCC-CcEEEEEecCChH-HH
Q 007106 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQN-RQSMMFSATMPPW-IR 291 (618)
Q Consensus 215 ~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~-~~~~~~~il~~l~~~-~~~l~lSAT~~~~-~~ 291 (618)
.++-++..+...+.. +.++++||||++.+..... ....+..++....+. ..++++|||.... +.
T Consensus 237 ---------~~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~ 303 (388)
T PRK12723 237 ---------KAIESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK 303 (388)
T ss_pred ---------EeeCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH
Confidence 112244555555543 4678999999999865321 123445555555433 4578899998643 33
Q ss_pred HHHHHh
Q 007106 292 SLTNKY 297 (618)
Q Consensus 292 ~~~~~~ 297 (618)
+.+..|
T Consensus 304 ~~~~~~ 309 (388)
T PRK12723 304 EIFHQF 309 (388)
T ss_pred HHHHHh
Confidence 344444
No 214
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=97.04 E-value=0.4 Score=53.37 Aligned_cols=71 Identities=14% Similarity=0.306 Sum_probs=54.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCccE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~ 248 (618)
..++||+|+|+.-+.++++.|.+. .+.+..+++..+...+...+. ...+||||| + +....+++.++++
T Consensus 245 ~~~~IVF~~tk~~a~~l~~~L~~~--g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVAT-----d-v~arGIDip~V~~ 316 (629)
T PRK11634 245 FDAAIIFVRTKNATLEVAEALERN--GYNSAALNGDMNQALREQTLERLKDGRLDILIAT-----D-VAARGLDVERISL 316 (629)
T ss_pred CCCEEEEeccHHHHHHHHHHHHhC--CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEc-----c-hHhcCCCcccCCE
Confidence 357999999999999999999875 467888898887666544433 358999999 4 4444577889999
Q ss_pred EEE
Q 007106 249 VVL 251 (618)
Q Consensus 249 vVi 251 (618)
||.
T Consensus 317 VI~ 319 (629)
T PRK11634 317 VVN 319 (629)
T ss_pred EEE
Confidence 884
No 215
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.03 E-value=0.0014 Score=66.62 Aligned_cols=123 Identities=18% Similarity=0.134 Sum_probs=74.9
Q ss_pred ChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCc
Q 007106 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD 201 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~ 201 (618)
|++-|.+++.. ...+++|.|..|||||.+.+.-++..+.... ....++|++++|+..+..+.+++...+....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~ 73 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-----VPPERILVLTFTNAAAQEMRERIRELLEEEQ 73 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-----STGGGEEEEESSHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-----CChHHheecccCHHHHHHHHHHHHHhcCccc
Confidence 57889999988 5668999999999999877666555554321 1235699999999999999999887532110
Q ss_pred EEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcC-CCC-CCccEEEEchhh
Q 007106 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA-LNL-SEVQFVVLDEAD 255 (618)
Q Consensus 202 ~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~-~~l-~~~~~vViDEaH 255 (618)
.. ................+.|.|...+...+.+.. ... -.-.+-|+|+..
T Consensus 74 ~~----~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 74 QE----SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp HC----CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cc----ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00 000001111222335788999988865443321 111 123567778777
No 216
>PRK14974 cell division protein FtsY; Provisional
Probab=97.03 E-value=0.009 Score=60.51 Aligned_cols=55 Identities=11% Similarity=0.136 Sum_probs=39.4
Q ss_pred CCccEEEEchhhhhcc-CCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhc
Q 007106 244 SEVQFVVLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~-~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l 298 (618)
.+.++||||++.++.. ......+..+.+.+.++..+++++||........+..|.
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHH
Confidence 4578999999998742 234566677777777788889999998766555555543
No 217
>PRK12377 putative replication protein; Provisional
Probab=96.97 E-value=0.012 Score=57.06 Aligned_cols=46 Identities=11% Similarity=0.299 Sum_probs=28.0
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHH
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~ 192 (618)
.++++.+++|+|||..+ .++...+.+ .+..+ ++++..+|..++...
T Consensus 102 ~~l~l~G~~GtGKThLa-~AIa~~l~~--------~g~~v-~~i~~~~l~~~l~~~ 147 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLA-AAIGNRLLA--------KGRSV-IVVTVPDVMSRLHES 147 (248)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHH--------cCCCe-EEEEHHHHHHHHHHH
Confidence 57999999999999754 344444433 13334 444555666655443
No 218
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.95 E-value=0.0035 Score=64.49 Aligned_cols=73 Identities=14% Similarity=0.169 Sum_probs=46.4
Q ss_pred CCCCChHHHHHHHHHHh----CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007106 118 GISKLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (618)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~----~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l 193 (618)
.+...+|-|-+-+..+. ...++|+.+|+|+|||.+.+..++...+.... ...+.++..-|..-.+....++
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~-----~~~KliYCSRTvpEieK~l~El 87 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD-----EHRKLIYCSRTVPEIEKALEEL 87 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc-----ccceEEEecCcchHHHHHHHHH
Confidence 34456777765554443 34579999999999997665555554443222 2346777777766666666665
Q ss_pred HH
Q 007106 194 HE 195 (618)
Q Consensus 194 ~~ 195 (618)
+.
T Consensus 88 ~~ 89 (755)
T KOG1131|consen 88 KR 89 (755)
T ss_pred HH
Confidence 54
No 219
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.91 E-value=0.002 Score=61.80 Aligned_cols=85 Identities=25% Similarity=0.368 Sum_probs=67.7
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhC-CCCcEEEEEcCc-chhhhhHHhhc-CCCEEEEChHHHHHHHHhcCCCCCCccE
Q 007106 172 RNPLCLVLAPTRELAKQVEKEFHESA-PSLDTICVYGGT-PISHQMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 172 ~~~~~lil~Pt~~La~q~~~~l~~~~-~~~~~~~~~g~~-~~~~~~~~l~~-~~~Ilv~T~~~l~~~l~~~~~~l~~~~~ 248 (618)
..|.+||||..-.-|..+.+.++.+- ....+.-++.-. ...++...+.. .++|.|+||++|..+++...+.++++.+
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~~ 204 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLKR 204 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCeE
Confidence 36889999998777888888888763 234444455443 56677777775 5899999999999999999999999999
Q ss_pred EEEchhhh
Q 007106 249 VVLDEADQ 256 (618)
Q Consensus 249 vViDEaH~ 256 (618)
||||--|.
T Consensus 205 ivlD~s~~ 212 (252)
T PF14617_consen 205 IVLDWSYL 212 (252)
T ss_pred EEEcCCcc
Confidence 99998774
No 220
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.91 E-value=0.004 Score=60.29 Aligned_cols=57 Identities=16% Similarity=0.240 Sum_probs=38.1
Q ss_pred CCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCC---hHHHHHHHHhc
Q 007106 241 LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP---PWIRSLTNKYL 298 (618)
Q Consensus 241 ~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~---~~~~~~~~~~l 298 (618)
.....++++|+||||.|... -...+.+.++.......+++.+--+. ..+......|.
T Consensus 125 ~~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~Kfr 184 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFR 184 (346)
T ss_pred CCCCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhc
Confidence 34667899999999988654 34556667777677777888777653 34444444443
No 221
>PRK08116 hypothetical protein; Validated
Probab=96.91 E-value=0.012 Score=58.00 Aligned_cols=107 Identities=15% Similarity=0.204 Sum_probs=56.4
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHH
Q 007106 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 217 (618)
.+++.+++|+|||..+. +++..+.+. +..++ +.+..++..++...+.... .
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~~~--------~~~v~-~~~~~~ll~~i~~~~~~~~------------~------- 166 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELIEK--------GVPVI-FVNFPQLLNRIKSTYKSSG------------K------- 166 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHHc--------CCeEE-EEEHHHHHHHHHHHHhccc------------c-------
Confidence 49999999999997553 455555431 23344 4444556554443332100 0
Q ss_pred hhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhh--hccCCcHHHHHHHHHhC-CCCCcEEEEEecCChHH
Q 007106 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ--MLSVGFAEDVEVILERL-PQNRQSMMFSATMPPWI 290 (618)
Q Consensus 218 l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~--~~~~~~~~~~~~il~~l-~~~~~~l~lSAT~~~~~ 290 (618)
.+...+++. +.+.++|||||++. ..++ ....+..++... ....++|+.|-..+..+
T Consensus 167 ---------~~~~~~~~~-------l~~~dlLviDDlg~e~~t~~-~~~~l~~iin~r~~~~~~~IiTsN~~~~eL 225 (268)
T PRK08116 167 ---------EDENEIIRS-------LVNADLLILDDLGAERDTEW-AREKVYNIIDSRYRKGLPTIVTTNLSLEEL 225 (268)
T ss_pred ---------ccHHHHHHH-------hcCCCEEEEecccCCCCCHH-HHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 011111111 45678999999963 2222 233444455433 34456677666555543
No 222
>PRK06921 hypothetical protein; Provisional
Probab=96.90 E-value=0.015 Score=57.23 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=19.0
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHH
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKII 162 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~ 162 (618)
..++++.+++|+|||..+ .+++..+.
T Consensus 117 ~~~l~l~G~~G~GKThLa-~aia~~l~ 142 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLL-TAAANELM 142 (266)
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHHh
Confidence 467999999999999754 34444443
No 223
>PRK06893 DNA replication initiation factor; Validated
Probab=96.84 E-value=0.0043 Score=59.78 Aligned_cols=46 Identities=17% Similarity=0.391 Sum_probs=29.3
Q ss_pred CCCccEEEEchhhhhccC-CcHHHHHHHHHhCCC-CCcEEEEEecCCh
Q 007106 243 LSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQ-NRQSMMFSATMPP 288 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~-~~~~~~~~il~~l~~-~~~~l~lSAT~~~ 288 (618)
+.+.++|||||+|.+... .+...+..++..+.. ..++|++|++.++
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p 136 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSP 136 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCCh
Confidence 346789999999987532 233445555555543 3456777777654
No 224
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.79 E-value=0.014 Score=70.81 Aligned_cols=127 Identities=16% Similarity=0.186 Sum_probs=76.1
Q ss_pred CCChHHHHHHHHHHhCC--CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC
Q 007106 120 SKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~--~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
..|++.|++|+..++.. +-++|++..|+|||.+. -.++..+.. .....+..++.++||-.-+..+.+ .
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~----l~~~~~~~V~glAPTgrAAk~L~e----~- 1035 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNT----LPESERPRVVGLGPTHRAVGEMRS----A- 1035 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHH----hhcccCceEEEECCcHHHHHHHHh----c-
Confidence 46999999999999975 45899999999999742 333333321 111225678999999766654432 1
Q ss_pred CCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHH----hcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhC
Q 007106 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIK----RNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (618)
Q Consensus 198 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~----~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l 273 (618)
++. -.|..+|+.... ........-++|||||+=++. ...+..++..+
T Consensus 1036 -Gi~------------------------A~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~----~~~m~~Ll~~~ 1086 (1747)
T PRK13709 1036 -GVD------------------------AQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVG----NTDMARAYALI 1086 (1747)
T ss_pred -Ccc------------------------hhhHHHHhcccccccccccCCCCCCcEEEEEcccccc----HHHHHHHHHhh
Confidence 111 123333322110 111112345799999999763 45566777766
Q ss_pred CC-CCcEEEEEec
Q 007106 274 PQ-NRQSMMFSAT 285 (618)
Q Consensus 274 ~~-~~~~l~lSAT 285 (618)
+. ..++|++-=+
T Consensus 1087 ~~~garvVLVGD~ 1099 (1747)
T PRK13709 1087 AAGGGRAVSSGDT 1099 (1747)
T ss_pred hcCCCEEEEecch
Confidence 54 5777766433
No 225
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.78 E-value=0.024 Score=54.79 Aligned_cols=46 Identities=22% Similarity=0.344 Sum_probs=26.8
Q ss_pred CCCccEEEEchhhhhccCCcHH-HHHHHHHh-CCCCCcEEEEEecCCh
Q 007106 243 LSEVQFVVLDEADQMLSVGFAE-DVEVILER-LPQNRQSMMFSATMPP 288 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~~~~~-~~~~il~~-l~~~~~~l~lSAT~~~ 288 (618)
+..+++|||||++......+.. .+..|+.. ......+|+.|---+.
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~ 207 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNME 207 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHH
Confidence 4578899999999765443333 34445543 2334556665554443
No 226
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.77 E-value=0.022 Score=59.91 Aligned_cols=67 Identities=13% Similarity=0.255 Sum_probs=37.1
Q ss_pred EChHHHHHHHHhcCCCCCCccEEEEchhhhhccC-CcHHHHHHHHHhC-CCCCcEEEEEecCChH-HHHHHHHh
Q 007106 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERL-PQNRQSMMFSATMPPW-IRSLTNKY 297 (618)
Q Consensus 227 ~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~-~~~~~~~~il~~l-~~~~~~l~lSAT~~~~-~~~~~~~~ 297 (618)
.++..+...+.. +.++++||||.+-+.... .....+..++... .+...+++++||.... +......|
T Consensus 285 ~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f 354 (424)
T PRK05703 285 YDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHF 354 (424)
T ss_pred CCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHh
Confidence 345555555543 446899999998653221 1223444555522 2334578899998754 33434433
No 227
>PRK05642 DNA replication initiation factor; Validated
Probab=96.76 E-value=0.0057 Score=59.09 Aligned_cols=46 Identities=22% Similarity=0.458 Sum_probs=29.3
Q ss_pred CCCccEEEEchhhhhccC-CcHHHHHHHHHhCCCCCcEEEEEecCCh
Q 007106 243 LSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPP 288 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~-~~~~~~~~il~~l~~~~~~l~lSAT~~~ 288 (618)
+.++++||||++|.+... .+...+..+++.+......++++++.++
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 345678999999976432 2345566777666554445666666544
No 228
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.75 E-value=0.0091 Score=52.44 Aligned_cols=50 Identities=24% Similarity=0.325 Sum_probs=37.6
Q ss_pred cccCCCHHHHHHHHHHHhcCC-ccEEEEccccccCCCCCC--ccEEEEcCCCC
Q 007106 373 LHGDISQSQRERTLSAFRDGR-FNILIATDVAARGLDVPN--VDLIIHYELPN 422 (618)
Q Consensus 373 lhg~~~~~~r~~i~~~f~~g~-~~vLVaT~~~~~Gidi~~--~~~VI~~~~p~ 422 (618)
+.......+...+++.|++.. ..||++|.-+.+|||+++ ++.||+...|.
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 333444556788899998654 379999988999999997 56888877664
No 229
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.74 E-value=0.013 Score=70.24 Aligned_cols=65 Identities=22% Similarity=0.304 Sum_probs=45.2
Q ss_pred CCChHHHHHHHHHHhCC--CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHH
Q 007106 120 SKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~--~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~ 189 (618)
..|++-|++|+..++.. +-++|++..|+|||.+. -.++..+.... ...+..++.++||-.-+..+
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l-~~i~~~~~~l~----e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF-RAVMSAVNMLP----ESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH-HHHHHHHHHHh----hccCceEEEEechHHHHHHH
Confidence 36999999999999865 56899999999999753 22333222111 12356789999996666554
No 230
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.72 E-value=0.0027 Score=55.51 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=15.1
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
+..+++.+|+|+|||..+
T Consensus 2 ~~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA 19 (148)
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 356899999999999754
No 231
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.71 E-value=0.014 Score=52.02 Aligned_cols=139 Identities=18% Similarity=0.145 Sum_probs=74.5
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHH-HHHHHHHhCCCCcEEEEEcCcchhhhhHH
Q 007106 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ-VEKEFHESAPSLDTICVYGGTPISHQMRA 217 (618)
Q Consensus 139 ~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q-~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 217 (618)
+.|...+|.|||.+++--++..+-. +.+++++.=.+.-... -...+++ ++.+.... .+.........
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~---------g~~v~~vQFlKg~~~~gE~~~l~~-l~~v~~~~--~g~~~~~~~~~ 72 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGH---------GYRVGVVQFLKGGWKYGELKALER-LPNIEIHR--MGRGFFWTTEN 72 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEEEeCCCCccCHHHHHHh-CCCcEEEE--CCCCCccCCCC
Confidence 5677888999999887777776633 6778884322211000 0112222 23333222 11110000000
Q ss_pred hhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCc--HHHHHHHHHhCCCCCcEEEEEecCChHHHHHH
Q 007106 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWIRSLT 294 (618)
Q Consensus 218 l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~--~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~ 294 (618)
.... .......+..... .+....+++||+||+-..++.++ ...+..+++..+....+|+++-.+|+++.+++
T Consensus 73 ~~~~----~~~a~~~~~~a~~-~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~A 146 (159)
T cd00561 73 DEED----IAAAAEGWAFAKE-AIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAA 146 (159)
T ss_pred hHHH----HHHHHHHHHHHHH-HHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhC
Confidence 0000 0000111111111 22346789999999998766553 56677778887888889998888888776654
No 232
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.69 E-value=0.016 Score=64.81 Aligned_cols=79 Identities=19% Similarity=0.162 Sum_probs=56.9
Q ss_pred HHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHH
Q 007106 112 AALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (618)
Q Consensus 112 ~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~ 191 (618)
..+.......|++-|++|+... ..+++|.|..|||||.+.+.-+...+... .....++|+++.|+..|..+.+
T Consensus 187 ~~f~~~e~~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~r~ayLl~~~-----~~~~~~IL~ltft~~AA~em~e 259 (684)
T PRK11054 187 DFFSQVESSPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVARAGWLLARG-----QAQPEQILLLAFGRQAAEEMDE 259 (684)
T ss_pred HHHHhccCCCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHHHHHHHHHhC-----CCCHHHeEEEeccHHHHHHHHH
Confidence 3444444567999999998643 35689999999999987655444433321 1124579999999999999999
Q ss_pred HHHHhC
Q 007106 192 EFHESA 197 (618)
Q Consensus 192 ~l~~~~ 197 (618)
++.+..
T Consensus 260 RL~~~l 265 (684)
T PRK11054 260 RIRERL 265 (684)
T ss_pred HHHHhc
Confidence 988764
No 233
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.67 E-value=0.018 Score=53.41 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=33.5
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007106 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 139 ~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
++|.+++|+|||..++..+...+.+ +..++++.. .+...++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~---------g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR---------GEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC---------CCcEEEEEC-CCCHHHHHHHHHHc
Confidence 6899999999998765555554422 556777765 46677777776654
No 234
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.60 E-value=0.037 Score=56.54 Aligned_cols=127 Identities=13% Similarity=0.197 Sum_probs=67.1
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcC--cH-HHHHHHHHHHHHhCCCCcEEEEEcCcchhh
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP--TR-ELAKQVEKEFHESAPSLDTICVYGGTPISH 213 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~P--t~-~La~q~~~~l~~~~~~~~~~~~~g~~~~~~ 213 (618)
+.+++.++||+|||.++...+.. +.. .+.++.++.. .+ ..+.|+.......
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~~--------~GkkVglI~aDt~RiaAvEQLk~yae~l----------------- 295 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FHG--------KKKTVGFITTDHSRIGTVQQLQDYVKTI----------------- 295 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HHH--------cCCcEEEEecCCcchHHHHHHHHHhhhc-----------------
Confidence 35789999999999765443332 221 1344544432 33 3344444322211
Q ss_pred hhHHhhcCCCEE-EEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCC-cHHHHHHHHHhCCCCCcEEEEEecCCh-HH
Q 007106 214 QMRALDYGVDAV-VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQNRQSMMFSATMPP-WI 290 (618)
Q Consensus 214 ~~~~l~~~~~Il-v~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~-~~~~~~~il~~l~~~~~~l~lSAT~~~-~~ 290 (618)
+++++ +.++..+.+.+..-.. ..++++|+||-+=+..... .-..+..++....+..-++.+|||... .+
T Consensus 296 -------gipv~v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~ 367 (436)
T PRK11889 296 -------GFEVIAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM 367 (436)
T ss_pred -------CCcEEecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHH
Confidence 12222 3466667665543211 1258999999987644221 223344444444444456779998654 44
Q ss_pred HHHHHHh
Q 007106 291 RSLTNKY 297 (618)
Q Consensus 291 ~~~~~~~ 297 (618)
...+..|
T Consensus 368 ~~i~~~F 374 (436)
T PRK11889 368 IEIITNF 374 (436)
T ss_pred HHHHHHh
Confidence 5555554
No 235
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.59 E-value=0.009 Score=61.20 Aligned_cols=126 Identities=17% Similarity=0.183 Sum_probs=61.9
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcC-c-HHHHHHHHHHHHHhCCCCcEEEEEcCcchhh
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP-T-RELAKQVEKEFHESAPSLDTICVYGGTPISH 213 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~P-t-~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~ 213 (618)
+..+++.+|||+|||.+....+...+... + ..++.+++. + +.-+.+....+.+.. ++.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~------G-~~~V~lit~D~~R~ga~EqL~~~a~~~-gv~~----------- 197 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF------G-ASKVALLTTDSYRIGGHEQLRIFGKIL-GVPV----------- 197 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc------C-CCeEEEEecccccccHHHHHHHHHHHc-CCce-----------
Confidence 45689999999999986644433332220 0 123443332 2 111222223322222 1211
Q ss_pred hhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhC----CCCCcEEEEEecCChH
Q 007106 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL----PQNRQSMMFSATMPPW 289 (618)
Q Consensus 214 ~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l----~~~~~~l~lSAT~~~~ 289 (618)
..+-++..+...+.. +.+.++|+||++=+... ...+...+..+ .+...+++++||....
T Consensus 198 ----------~~~~~~~~l~~~l~~----l~~~DlVLIDTaG~~~~---d~~l~e~La~L~~~~~~~~~lLVLsAts~~~ 260 (374)
T PRK14722 198 ----------HAVKDGGDLQLALAE----LRNKHMVLIDTIGMSQR---DRTVSDQIAMLHGADTPVQRLLLLNATSHGD 260 (374)
T ss_pred ----------EecCCcccHHHHHHH----hcCCCEEEEcCCCCCcc---cHHHHHHHHHHhccCCCCeEEEEecCccChH
Confidence 123344444444433 55678999999975421 12222333322 2334578899998654
Q ss_pred H-HHHHHHh
Q 007106 290 I-RSLTNKY 297 (618)
Q Consensus 290 ~-~~~~~~~ 297 (618)
. .+.+..|
T Consensus 261 ~l~evi~~f 269 (374)
T PRK14722 261 TLNEVVQAY 269 (374)
T ss_pred HHHHHHHHH
Confidence 4 3344444
No 236
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.58 E-value=0.0088 Score=57.88 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=14.7
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
..+++.+|+|+|||..+
T Consensus 46 ~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 46 GYIYLWSREGAGRSHLL 62 (235)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999754
No 237
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.57 E-value=0.027 Score=56.82 Aligned_cols=37 Identities=19% Similarity=0.341 Sum_probs=23.6
Q ss_pred cEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCCh
Q 007106 247 QFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (618)
Q Consensus 247 ~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~ 288 (618)
.+++|||+||+. ..+...++-.+ .+-.++++-||-.+
T Consensus 106 tiLflDEIHRfn----K~QQD~lLp~v-E~G~iilIGATTEN 142 (436)
T COG2256 106 TILFLDEIHRFN----KAQQDALLPHV-ENGTIILIGATTEN 142 (436)
T ss_pred eEEEEehhhhcC----hhhhhhhhhhh-cCCeEEEEeccCCC
Confidence 468999999963 23333334333 45678888888544
No 238
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.54 E-value=0.02 Score=52.07 Aligned_cols=113 Identities=16% Similarity=0.097 Sum_probs=60.9
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHh
Q 007106 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218 (618)
Q Consensus 139 ~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l 218 (618)
.++.+|+.||||...+..+-..... +.++++..|-.. ..+. ...+.-+.+..
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~~---------g~~v~vfkp~iD----------~R~~-~~~V~Sr~G~~-------- 58 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKEA---------GMKVLVFKPAID----------TRYG-VGKVSSRIGLS-------- 58 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHHc---------CCeEEEEecccc----------cccc-cceeeeccCCc--------
Confidence 5789999999998544333333222 668899988411 1111 11222222221
Q ss_pred hcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCC
Q 007106 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (618)
Q Consensus 219 ~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~ 287 (618)
...++|-....+.+.+....... ++++|.||||+-+ ...+-..+..+..+.-+.++.+.+.
T Consensus 59 --~~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF~-----~~~~v~~l~~lad~lgi~Vi~~GL~ 119 (201)
T COG1435 59 --SEAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQFF-----DEELVYVLNELADRLGIPVICYGLD 119 (201)
T ss_pred --ccceecCChHHHHHHHHhcccCC-CcCEEEEehhHhC-----CHHHHHHHHHHHhhcCCEEEEeccc
Confidence 12456667777777776643322 3889999999953 2333333333333323444455543
No 239
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.54 E-value=0.046 Score=49.16 Aligned_cols=37 Identities=19% Similarity=0.123 Sum_probs=23.0
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHH
Q 007106 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (618)
Q Consensus 139 ~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~ 184 (618)
++|.+++|+|||..+...+.... . .+..++++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~-~--------~~~~v~~~~~e~~ 38 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA-T--------KGGKVVYVDIEEE 38 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH-h--------cCCEEEEEECCcc
Confidence 68999999999975543333222 1 2456777665433
No 240
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.52 E-value=0.0093 Score=67.67 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=26.5
Q ss_pred CCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEE
Q 007106 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
...++++||||+|+|... -...+.++++..+..+.+|+++
T Consensus 118 ~~~~KV~IIDEad~lt~~-a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQ-GFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred cCCceEEEEechhhcCHH-HHHHHHHHHhCCCCCeEEEEEe
Confidence 357899999999988543 3344555566555566666655
No 241
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.49 E-value=0.008 Score=63.27 Aligned_cols=143 Identities=13% Similarity=0.257 Sum_probs=82.1
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHH-HHHHHHHHHHHhCCCCcEE--EEEcCcchhhh
Q 007106 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE-LAKQVEKEFHESAPSLDTI--CVYGGTPISHQ 214 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~-La~q~~~~l~~~~~~~~~~--~~~g~~~~~~~ 214 (618)
-.++.+..|||||.++...++..++.. ..+.+++++-|+.. |...++.++......+... .-....+. .
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~------~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~ 74 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN------KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--E 74 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc------CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--E
Confidence 367899999999998888777776653 12567899988876 6667777777544322211 11111100 1
Q ss_pred hHHhhc-CCCEEEECh-HHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCC--CCcEEEEEecCChHH
Q 007106 215 MRALDY-GVDAVVGTP-GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ--NRQSMMFSATMPPWI 290 (618)
Q Consensus 215 ~~~l~~-~~~Ilv~T~-~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~--~~~~l~lSAT~~~~~ 290 (618)
+. +.. +..|++..- +...+ + .....+.++++|||..+. ...+..++.+++. ....+++|.||+...
T Consensus 75 i~-~~~~g~~i~f~g~~d~~~~-i----k~~~~~~~~~idEa~~~~----~~~~~~l~~rlr~~~~~~~i~~t~NP~~~~ 144 (396)
T TIGR01547 75 IK-ILNTGKKFIFKGLNDKPNK-L----KSGAGIAIIWFEEASQLT----FEDIKELIPRLRETGGKKFIIFSSNPESPL 144 (396)
T ss_pred EE-ecCCCeEEEeecccCChhH-h----hCcceeeeehhhhhhhcC----HHHHHHHHHHhhccCCccEEEEEcCcCCCc
Confidence 11 112 345666553 11111 1 123446899999999873 3355566655542 222488899987644
Q ss_pred HHHHHHhc
Q 007106 291 RSLTNKYL 298 (618)
Q Consensus 291 ~~~~~~~l 298 (618)
.-+...|+
T Consensus 145 ~w~~~~f~ 152 (396)
T TIGR01547 145 HWVKKRFI 152 (396)
T ss_pred cHHHHHHH
Confidence 44444444
No 242
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.49 E-value=0.011 Score=58.73 Aligned_cols=119 Identities=15% Similarity=0.077 Sum_probs=58.4
Q ss_pred HHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEE--cCc
Q 007106 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY--GGT 209 (618)
Q Consensus 132 ~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~--g~~ 209 (618)
-+..+.-++|.+++|+|||..++..+...+.. .+..++++.- ..-..++...+......+...... ...
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~--------~g~~vl~iS~-E~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 96 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQ--------HGVRVGTISL-EEPVVRTARRLLGQYAGKRLHLPDTVFIY 96 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh--------cCceEEEEEc-ccCHHHHHHHHHHHHhCCCcccCCccccc
Confidence 34555678999999999997655444443321 1456777753 333445555543332122211100 000
Q ss_pred chhhh---hHHhhcCCCEEE------EChHHHHHHHHhcCCCCCCccEEEEchhhhhccC
Q 007106 210 PISHQ---MRALDYGVDAVV------GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260 (618)
Q Consensus 210 ~~~~~---~~~l~~~~~Ilv------~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~ 260 (618)
..... ...+.....+.+ .|.+.+...+..... -..+++||||.++.+...
T Consensus 97 ~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~-~~~~~~vvID~l~~l~~~ 155 (271)
T cd01122 97 TLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAV-SHGIQHIIIDNLSIMVSD 155 (271)
T ss_pred cHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHh-cCCceEEEECCHHHHhcc
Confidence 10000 111211112222 155566555543221 236889999999987643
No 243
>PRK08727 hypothetical protein; Validated
Probab=96.48 E-value=0.014 Score=56.39 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=26.3
Q ss_pred CCCccEEEEchhhhhccCC-cHHHHHHHHHhCCC-CCcEEEEEecCChHH
Q 007106 243 LSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQ-NRQSMMFSATMPPWI 290 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~~-~~~~~~~il~~l~~-~~~~l~lSAT~~~~~ 290 (618)
+.+.++|||||+|.+.... ....+..++..... ..++|+.|-.+|...
T Consensus 91 l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 91 LEGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred HhcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 3456789999999875432 22233344444332 344555555555433
No 244
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.47 E-value=0.057 Score=54.72 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=27.7
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHH
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 190 (618)
..++++.++||+|||..+ .++...+.. .+..|++ .+...|..+..
T Consensus 183 ~~~Lll~G~~GtGKThLa-~aIa~~l~~--------~g~~V~y-~t~~~l~~~l~ 227 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLS-NCIAKELLD--------RGKSVIY-RTADELIEILR 227 (329)
T ss_pred CCcEEEECCCCCcHHHHH-HHHHHHHHH--------CCCeEEE-EEHHHHHHHHH
Confidence 478999999999999854 344444433 1344544 44455655443
No 245
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.46 E-value=0.016 Score=54.18 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=36.1
Q ss_pred CCccEEEEchhhhhcc-CCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhc
Q 007106 244 SEVQFVVLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~-~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l 298 (618)
+++++|+||-+-+... ......+..++..+.+..-.++++||...........+.
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~ 137 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFY 137 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHh
Confidence 4678899999875432 113456666777776666789999999776555444443
No 246
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.45 E-value=0.015 Score=51.26 Aligned_cols=70 Identities=17% Similarity=0.314 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhcCCc---cEEEEccc--cccCCCCCC--ccEEEEcCCCC----Chh----------------------
Q 007106 379 QSQRERTLSAFRDGRF---NILIATDV--AARGLDVPN--VDLIIHYELPN----TSE---------------------- 425 (618)
Q Consensus 379 ~~~r~~i~~~f~~g~~---~vLVaT~~--~~~Gidi~~--~~~VI~~~~p~----~~~---------------------- 425 (618)
..+..++++.|++... .||+++.- +.+|||+++ ++.||+...|. ++.
T Consensus 30 ~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 109 (142)
T smart00491 30 SGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYL 109 (142)
T ss_pred CchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3345678888886443 68888876 999999998 67888877774 111
Q ss_pred -----HHHHhhhccCCCCCcceEEEEec
Q 007106 426 -----TFVHRTGRTGRAGKKGSAILIYT 448 (618)
Q Consensus 426 -----~~~Qr~GR~gR~g~~g~~~~~~~ 448 (618)
...|.+||+-|...+--++++++
T Consensus 110 ~~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 110 FDAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred HHHHHHHHHHhCccccCccceEEEEEEe
Confidence 12488899999865544444443
No 247
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.43 E-value=0.013 Score=65.85 Aligned_cols=71 Identities=18% Similarity=0.136 Sum_probs=53.2
Q ss_pred CChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC
Q 007106 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~ 198 (618)
.|++-|++++... ...++|.|..|||||.+...-+...+.... -...++|+|+.|+..|.++.+++.+.++
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~-----v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcC-----CCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 4789999998753 357899999999999876555554443211 1134799999999999999999987653
No 248
>PF13173 AAA_14: AAA domain
Probab=96.37 E-value=0.034 Score=48.07 Aligned_cols=38 Identities=8% Similarity=0.327 Sum_probs=26.7
Q ss_pred CccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEec
Q 007106 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (618)
Q Consensus 245 ~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT 285 (618)
.-.+|+|||+|.+.+ +...++.+++.. ++.++++++..
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccc
Confidence 556899999999864 567777777654 45666665444
No 249
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.37 E-value=0.0013 Score=59.73 Aligned_cols=124 Identities=19% Similarity=0.180 Sum_probs=55.4
Q ss_pred EEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh
Q 007106 140 IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219 (618)
Q Consensus 140 ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~ 219 (618)
+|.|+-|-|||.+.-+++...+.. ...+++|.+|+.+-++.+++.+.+.+..+...... ............
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~--------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~-~~~~~~~~~~~~ 71 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK--------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEK-KKRIGQIIKLRF 71 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------------EEEE-SS--S-HHHHHCC--------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh--------cCceEEEecCCHHHHHHHHHHHHhhcccccccccc-cccccccccccc
Confidence 578999999997655444333211 12469999999988888777765543322211100 000000001111
Q ss_pred cCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCC
Q 007106 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (618)
Q Consensus 220 ~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~ 287 (618)
....|-+..|+.+.... ...++||||||=.+ -.+.+..++. ....++||.|..
T Consensus 72 ~~~~i~f~~Pd~l~~~~-------~~~DlliVDEAAaI----p~p~L~~ll~----~~~~vv~stTi~ 124 (177)
T PF05127_consen 72 NKQRIEFVAPDELLAEK-------PQADLLIVDEAAAI----PLPLLKQLLR----RFPRVVFSTTIH 124 (177)
T ss_dssp -CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHC----CSSEEEEEEEBS
T ss_pred ccceEEEECCHHHHhCc-------CCCCEEEEechhcC----CHHHHHHHHh----hCCEEEEEeecc
Confidence 24567777777765422 23578999999976 3445555543 345778888875
No 250
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.34 E-value=0.026 Score=54.26 Aligned_cols=43 Identities=12% Similarity=0.313 Sum_probs=24.7
Q ss_pred CccEEEEchhhhhccC-CcHHHHHHHHHhCCCCCcEEEEEecCC
Q 007106 245 EVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMP 287 (618)
Q Consensus 245 ~~~~vViDEaH~~~~~-~~~~~~~~il~~l~~~~~~l~lSAT~~ 287 (618)
..++|||||+|.+... .....+..++..+......+++|++.+
T Consensus 90 ~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 90 QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 3468999999987543 124455555555432223455565543
No 251
>PTZ00293 thymidine kinase; Provisional
Probab=96.32 E-value=0.029 Score=52.40 Aligned_cols=35 Identities=14% Similarity=0.067 Sum_probs=24.8
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc
Q 007106 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (618)
Q Consensus 139 ~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt 182 (618)
.++.+|++||||.-.+..+.....+ +.+++++-|.
T Consensus 7 ~vi~GpMfSGKTteLLr~i~~y~~a---------g~kv~~~kp~ 41 (211)
T PTZ00293 7 SVIIGPMFSGKTTELMRLVKRFTYS---------EKKCVVIKYS 41 (211)
T ss_pred EEEECCCCChHHHHHHHHHHHHHHc---------CCceEEEEec
Confidence 5789999999997555444433322 5678888885
No 252
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.32 E-value=0.025 Score=58.89 Aligned_cols=35 Identities=17% Similarity=0.162 Sum_probs=27.8
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHH
Q 007106 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l 154 (618)
.-+-......+..+..++++++.+++|+|||..+.
T Consensus 178 ~i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 178 FIPETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred cCCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 33455666777788888999999999999998653
No 253
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.29 E-value=0.013 Score=57.12 Aligned_cols=50 Identities=18% Similarity=0.351 Sum_probs=35.3
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007106 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~ 194 (618)
++.++++.+++|+|||..+.. +...+.+ ...-++++++.+|+.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~A-i~~~l~~---------~g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIA-IGNELLK---------AGISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHH-HHHHHHH---------cCCeEEEEEHHHHHHHHHHHHh
Confidence 667899999999999986643 3333333 3455667777788887776664
No 254
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.27 E-value=0.053 Score=59.90 Aligned_cols=146 Identities=19% Similarity=0.226 Sum_probs=83.5
Q ss_pred HHHcCCCCChHHHHHHHHHHhCCC--CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHH
Q 007106 114 LARRGISKLFPIQKAVLEPAMQGR--DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (618)
Q Consensus 114 l~~~~~~~l~~~Q~~~i~~i~~~~--~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~ 191 (618)
+..........-|.+.+..++... -+++.|+-|=|||.+.-+++. .+.... ....++|.+|+.+-++.+++
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~-~~~~~~------~~~~iiVTAP~~~nv~~Lf~ 279 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALA-AAARLA------GSVRIIVTAPTPANVQTLFE 279 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH-HHHHhc------CCceEEEeCCCHHHHHHHHH
Confidence 333333334444444555566543 488999999999988776663 222211 13579999999998888877
Q ss_pred HHHHhCCCCcE--EEEEcCcchhhhhHHh-hcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHH
Q 007106 192 EFHESAPSLDT--ICVYGGTPISHQMRAL-DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268 (618)
Q Consensus 192 ~l~~~~~~~~~--~~~~g~~~~~~~~~~l-~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~ 268 (618)
.+.+-+..+.. .+..... ...... .....|-+-+|.... ..-++||||||=.+ -.+.+++
T Consensus 280 fa~~~l~~lg~~~~v~~d~~---g~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaI----plplL~~ 342 (758)
T COG1444 280 FAGKGLEFLGYKRKVAPDAL---GEIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAI----PLPLLHK 342 (758)
T ss_pred HHHHhHHHhCCccccccccc---cceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcC----ChHHHHH
Confidence 76654322211 1100000 000001 111234455554332 11578999999976 4566666
Q ss_pred HHHhCCCCCcEEEEEecCC
Q 007106 269 ILERLPQNRQSMMFSATMP 287 (618)
Q Consensus 269 il~~l~~~~~~l~lSAT~~ 287 (618)
++... +.++||.|+.
T Consensus 343 l~~~~----~rv~~sTTIh 357 (758)
T COG1444 343 LLRRF----PRVLFSTTIH 357 (758)
T ss_pred HHhhc----CceEEEeeec
Confidence 66654 5788999985
No 255
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.26 E-value=0.022 Score=64.70 Aligned_cols=109 Identities=17% Similarity=0.193 Sum_probs=72.1
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC
Q 007106 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~ 199 (618)
..|++-|++++... ...++|.|..|||||.+...-+...+ .... -...++|+|+.|+..|.++.+++.++.+.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li-~~~~----v~p~~IL~lTFTnkAA~em~~Rl~~~~~~ 75 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLL-SVEN----ASPHSIMAVTFTNKAAAEMRHRIGALLGT 75 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHH-HcCC----CCHHHeEeeeccHHHHHHHHHHHHHHhcc
Confidence 45899999998653 35799999999999987654444433 3111 12347999999999999999999887431
Q ss_pred CcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHH-HHHhcC--CCCCCccEEEEchhhh
Q 007106 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVID-LIKRNA--LNLSEVQFVVLDEADQ 256 (618)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~-~l~~~~--~~l~~~~~vViDEaH~ 256 (618)
. ...+.|+|...+.. ++.... ..+ .-.+-|+|+.+.
T Consensus 76 ~--------------------~~~~~i~TfHs~~~~iLr~~~~~~g~-~~~f~i~d~~d~ 114 (715)
T TIGR01075 76 S--------------------ARGMWIGTFHGLAHRLLRAHHLDAGL-PQDFQILDSDDQ 114 (715)
T ss_pred c--------------------ccCcEEEcHHHHHHHHHHHHHHHhCC-CCCCeecCHHHH
Confidence 0 02567899888743 443321 111 123467787764
No 256
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.26 E-value=0.037 Score=56.18 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=27.0
Q ss_pred ChHHHHHHHHHHhCCC----CEEEEccCCChhHHHHHH
Q 007106 122 LFPIQKAVLEPAMQGR----DMIGRARTGTGKTLAFGI 155 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~----~~ll~~~tGsGKT~~~l~ 155 (618)
++|||...|..+.... -+|+.+|.|.|||..+..
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~ 41 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER 41 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH
Confidence 5789999988887643 388999999999976543
No 257
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.23 E-value=0.013 Score=55.86 Aligned_cols=106 Identities=16% Similarity=0.209 Sum_probs=58.9
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHH
Q 007106 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 217 (618)
.++|.+++|+|||.. +.++...+.+. .++.+++++.. .+........+...
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~------~~~~~v~y~~~-~~f~~~~~~~~~~~--------------------- 86 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQ------HPGKRVVYLSA-EEFIREFADALRDG--------------------- 86 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHH------CTTS-EEEEEH-HHHHHHHHHHHHTT---------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhc------cccccceeecH-HHHHHHHHHHHHcc---------------------
Confidence 389999999999973 34444444331 12445666654 35555544444320
Q ss_pred hhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCC-cHHHHHHHHHhCC-CCCcEEEEEecCChH
Q 007106 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLP-QNRQSMMFSATMPPW 289 (618)
Q Consensus 218 l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~-~~~~~~~il~~l~-~~~~~l~lSAT~~~~ 289 (618)
..+.+.+. +...++||||.+|.+.... ....+..++..+. ...++|+.|..+|..
T Consensus 87 ----------~~~~~~~~-------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 87 ----------EIEEFKDR-------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp ----------SHHHHHHH-------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred ----------cchhhhhh-------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 11112211 4578899999999876531 2344444555443 355666666666654
No 258
>PRK09183 transposase/IS protein; Provisional
Probab=96.23 E-value=0.047 Score=53.54 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=19.0
Q ss_pred HhCCCCEEEEccCCChhHHHHHHH
Q 007106 133 AMQGRDMIGRARTGTGKTLAFGIP 156 (618)
Q Consensus 133 i~~~~~~ll~~~tGsGKT~~~l~~ 156 (618)
+.++.++++.+|+|+|||..+...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHH
Confidence 455778999999999999765433
No 259
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.23 E-value=0.043 Score=50.37 Aligned_cols=144 Identities=17% Similarity=0.130 Sum_probs=78.4
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHH-HHHHHHHHhCCCCcEEEEEcCcchhh
Q 007106 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK-QVEKEFHESAPSLDTICVYGGTPISH 213 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~-q~~~~l~~~~~~~~~~~~~g~~~~~~ 213 (618)
....+++...+|.|||.+++--++..+-. +.+++|+.=.+--.. --...+.+ ++.+.. ...+.....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~---------G~~V~ivQFlKg~~~~GE~~~l~~-l~~v~~--~~~g~~~~~ 88 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGH---------GKKVGVVQFIKGAWSTGERNLLEF-GGGVEF--HVMGTGFTW 88 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHC---------CCeEEEEEEecCCCccCHHHHHhc-CCCcEE--EECCCCCcc
Confidence 44579999999999999888777777633 677887753332111 11112222 222222 211111100
Q ss_pred hhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCc--HHHHHHHHHhCCCCCcEEEEEecCChHHH
Q 007106 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWIR 291 (618)
Q Consensus 214 ~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~--~~~~~~il~~l~~~~~~l~lSAT~~~~~~ 291 (618)
....... + .......+..... .+.-..+++||+||+-..++.++ ...+..++..-|....+|++--.+|+++.
T Consensus 89 ~~~~~~e--~--~~~~~~~~~~a~~-~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Li 163 (191)
T PRK05986 89 ETQDRER--D--IAAAREGWEEAKR-MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELI 163 (191)
T ss_pred cCCCcHH--H--HHHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHH
Confidence 0000000 0 0011111222111 22245789999999998877664 45666777777777788887777888766
Q ss_pred HHHH
Q 007106 292 SLTN 295 (618)
Q Consensus 292 ~~~~ 295 (618)
+++.
T Consensus 164 e~AD 167 (191)
T PRK05986 164 EAAD 167 (191)
T ss_pred HhCc
Confidence 6543
No 260
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.21 E-value=0.14 Score=54.67 Aligned_cols=65 Identities=15% Similarity=0.257 Sum_probs=34.1
Q ss_pred ChHHHHHHHHhcCCCCCCccEEEEchhhhhccCC-cHHHHHHHHHhCCCCCcEEEEEecCCh-HHHHHHHHh
Q 007106 228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQNRQSMMFSATMPP-WIRSLTNKY 297 (618)
Q Consensus 228 T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~-~~~~~~~il~~l~~~~~~l~lSAT~~~-~~~~~~~~~ 297 (618)
++..+...+.. +.++++||||.+-+..... ....+..+. .......+++++++... .+...+..|
T Consensus 415 d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~-aa~~~a~lLVLpAtss~~Dl~eii~~f 481 (559)
T PRK12727 415 SAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLR-AARQVTSLLVLPANAHFSDLDEVVRRF 481 (559)
T ss_pred cHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHH-HhhcCCcEEEEECCCChhHHHHHHHHH
Confidence 34445555543 4578999999997542110 111222222 22334567888888753 333344333
No 261
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.21 E-value=0.042 Score=58.85 Aligned_cols=108 Identities=14% Similarity=0.179 Sum_probs=55.9
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhH
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~ 216 (618)
..+++.+++|+|||..+ .++...+.+. ..+..++++ +...+..++...+...
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~------~~~~~v~yi-~~~~~~~~~~~~~~~~-------------------- 200 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEK------NPNAKVVYV-TSEKFTNDFVNALRNN-------------------- 200 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHh------CCCCeEEEE-EHHHHHHHHHHHHHcC--------------------
Confidence 34899999999999754 3344444331 113445555 4445655554444210
Q ss_pred HhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCC-cHHHHHHHHHhCC-CCCcEEEEEecCChHH
Q 007106 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLP-QNRQSMMFSATMPPWI 290 (618)
Q Consensus 217 ~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~-~~~~~~~il~~l~-~~~~~l~lSAT~~~~~ 290 (618)
+.+.+... +..+++|||||+|.+.... ....+..++..+. ...++|+.|.++|..+
T Consensus 201 -----------~~~~~~~~-------~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l 258 (450)
T PRK00149 201 -----------TMEEFKEK-------YRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKEL 258 (450)
T ss_pred -----------cHHHHHHH-------HhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHH
Confidence 11222221 3357799999999875432 1233444444432 3345555444444443
No 262
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.19 E-value=0.02 Score=56.78 Aligned_cols=49 Identities=12% Similarity=0.086 Sum_probs=26.9
Q ss_pred CCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHh
Q 007106 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY 297 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~ 297 (618)
++-.++.|||+|++ ......++--.-.+-.+++..||-.+....+...+
T Consensus 221 krkTilFiDEiHRF-----NksQQD~fLP~VE~G~I~lIGATTENPSFqln~aL 269 (554)
T KOG2028|consen 221 KRKTILFIDEIHRF-----NKSQQDTFLPHVENGDITLIGATTENPSFQLNAAL 269 (554)
T ss_pred cceeEEEeHHhhhh-----hhhhhhcccceeccCceEEEecccCCCccchhHHH
Confidence 44557899999995 33333332222234457777888654444433333
No 263
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.19 E-value=0.024 Score=64.41 Aligned_cols=109 Identities=21% Similarity=0.166 Sum_probs=71.8
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC
Q 007106 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~ 199 (618)
..|++-|++++... ...++|.|..|||||.+...-+...+.... -....+|+|+-|+..|.++.+++.++...
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~-----v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~ 80 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVEN-----ASPYSIMAVTFTNKAAAEMRHRIEQLLGT 80 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCC-----CChhHeEeeeccHHHHHHHHHHHHHHhcc
Confidence 35899999999754 357999999999999876544444332211 12347999999999999999999886431
Q ss_pred CcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHH-HHHhcC--CCCCCccEEEEchhhh
Q 007106 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVID-LIKRNA--LNLSEVQFVVLDEADQ 256 (618)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~-~l~~~~--~~l~~~~~vViDEaH~ 256 (618)
. ...+.|+|...+.. +|.... ..+ .-.+-|+|+.+.
T Consensus 81 ~--------------------~~~~~i~TfHs~~~~iLr~~~~~~g~-~~~f~i~d~~d~ 119 (721)
T PRK11773 81 S--------------------QGGMWVGTFHGLAHRLLRAHWQDANL-PQDFQILDSDDQ 119 (721)
T ss_pred C--------------------CCCCEEEcHHHHHHHHHHHHHHHhCC-CCCCeecCHHHH
Confidence 0 02467889888843 343321 111 123457787663
No 264
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=96.14 E-value=0.16 Score=45.96 Aligned_cols=139 Identities=19% Similarity=0.208 Sum_probs=67.0
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHH-HHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHH
Q 007106 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE-LAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (618)
Q Consensus 139 ~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~-La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 217 (618)
+.|..-.|-|||.+++--++..+ +.+.+++|+.=.+. -..--...++ .++.+.... .+.........
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~---------G~G~rV~ivQFlKg~~~~GE~~~l~-~l~~~~~~~--~g~~f~~~~~~ 73 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAA---------GHGMRVLIVQFLKGGRYSGELKALK-KLPNVEIER--FGKGFVWRMNE 73 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHH---------CTT--EEEEESS--SS--HHHHHHG-GGT--EEEE----TT----GGG
T ss_pred EEEEeCCCCCchHHHHHHHHHHH---------hCCCEEEEEEEecCCCCcCHHHHHH-hCCeEEEEE--cCCcccccCCC
Confidence 55667789999998888777776 45788999876555 1111122222 233332222 11111110000
Q ss_pred hhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCc--HHHHHHHHHhCCCCCcEEEEEecCChHHHHHH
Q 007106 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWIRSLT 294 (618)
Q Consensus 218 l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~--~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~ 294 (618)
-.. + .......++... ..+.-..+++||+||+-..++.++ ...+..+++.-|....+|++--.+|+++.+.+
T Consensus 74 ~~~--~--~~~~~~~~~~a~-~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~A 147 (172)
T PF02572_consen 74 EEE--D--RAAAREGLEEAK-EAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAA 147 (172)
T ss_dssp HHH--H--HHHHHHHHHHHH-HHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-
T ss_pred cHH--H--HHHHHHHHHHHH-HHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhC
Confidence 000 0 001111122222 123346799999999998877664 45677777777778888888888888766654
No 265
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.13 E-value=0.09 Score=57.19 Aligned_cols=146 Identities=14% Similarity=0.099 Sum_probs=78.4
Q ss_pred ChHHHHHHHHHHh---CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC
Q 007106 122 LFPIQKAVLEPAM---QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (618)
Q Consensus 122 l~~~Q~~~i~~i~---~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~ 198 (618)
+.|.=.+-|+++. +.+-.++.+|=+.|||.+..+.++..+.. .+.+++|.+|...-++++++.+++.+.
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f--------~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF--------LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh--------cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 4444444444443 33557889999999997765554433321 156899999999999998888776553
Q ss_pred CCc----------EEEEEcCcc-hhhhh-HHhhcC-CCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHH
Q 007106 199 SLD----------TICVYGGTP-ISHQM-RALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265 (618)
Q Consensus 199 ~~~----------~~~~~g~~~-~~~~~-~~l~~~-~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~ 265 (618)
.+. +..+.++.. ..... ...+.+ ..|.+.+.. .+...-..+++||+|||+.+.. ..
T Consensus 242 ~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~~----~~ 310 (752)
T PHA03333 242 AYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVNP----GA 310 (752)
T ss_pred HhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCCH----HH
Confidence 221 111121111 00000 000001 223332211 1222224578999999997643 44
Q ss_pred HHHHHHhCC-CCCcEEEEEecC
Q 007106 266 VEVILERLP-QNRQSMMFSATM 286 (618)
Q Consensus 266 ~~~il~~l~-~~~~~l~lSAT~ 286 (618)
+..++-.+. ...+++++|.+-
T Consensus 311 l~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 311 LLSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred HHHHHHHHccCCCceEEEeCCC
Confidence 444444443 356667777664
No 266
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.11 E-value=0.035 Score=57.04 Aligned_cols=40 Identities=13% Similarity=0.275 Sum_probs=25.4
Q ss_pred CCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEe
Q 007106 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSA 284 (618)
...++|||||+|.+... ....+..+++..+....+|+.+.
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEeC
Confidence 45679999999987432 33445566666655666555443
No 267
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.11 E-value=0.02 Score=61.71 Aligned_cols=70 Identities=23% Similarity=0.159 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhC-----C----CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007106 124 PIQKAVLEPAMQ-----G----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (618)
Q Consensus 124 ~~Q~~~i~~i~~-----~----~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~ 194 (618)
|+|+-++..+.- + +.+++.-+=+.|||......++..+.-. ...+..++++++++..|..+++.+.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~-----g~~~~~i~~~A~~~~QA~~~f~~~~ 75 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD-----GEPGAEIYCAANTRDQAKIVFDEAK 75 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC-----CccCceEEEEeCCHHHHHHHHHHHH
Confidence 578877766652 1 2478888999999975544444343321 1236789999999999999999988
Q ss_pred HhCC
Q 007106 195 ESAP 198 (618)
Q Consensus 195 ~~~~ 198 (618)
++..
T Consensus 76 ~~i~ 79 (477)
T PF03354_consen 76 KMIE 79 (477)
T ss_pred HHHH
Confidence 8753
No 268
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.10 E-value=0.036 Score=69.07 Aligned_cols=65 Identities=20% Similarity=0.215 Sum_probs=44.4
Q ss_pred CCChHHHHHHHHHHhCCC--CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHH
Q 007106 120 SKLFPIQKAVLEPAMQGR--DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~--~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~ 189 (618)
..|++.|++|+..++... -++|++..|+|||.+. ..++..+..... ..+.+++.++||-.-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l-~~~~~~i~~~~~----~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTML-ESRYKPVLQAFE----SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhH-HHHHHHHHHHHH----hcCCeEEEEeChHHHHHHH
Confidence 469999999999988754 4788999999999754 222222222111 1256899999996665544
No 269
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.10 E-value=0.034 Score=53.49 Aligned_cols=43 Identities=12% Similarity=0.303 Sum_probs=26.2
Q ss_pred CccEEEEchhhhhccCCcHHHHHHHHHhCCCCCc-EEEEEecCCh
Q 007106 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ-SMMFSATMPP 288 (618)
Q Consensus 245 ~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~-~l~lSAT~~~ 288 (618)
..++|||||+|.+... ....+..++........ +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 4678999999986432 33445555555443333 5677777543
No 270
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.05 E-value=0.022 Score=62.85 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=25.1
Q ss_pred CCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEe
Q 007106 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSA 284 (618)
..++++||||+|+|.... ...+.++++.-+.+..+|+.|-
T Consensus 118 gr~KVIIIDEah~LT~~A-~NALLKtLEEPP~~v~FILaTt 157 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA-FNAMLKTLEEPPPHVKFILATT 157 (830)
T ss_pred CCceEEEEeChhhCCHHH-HHHHHHHHHhcCCCeEEEEEEC
Confidence 467899999999885432 2334445555555555555543
No 271
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=96.04 E-value=0.042 Score=66.06 Aligned_cols=124 Identities=20% Similarity=0.191 Sum_probs=78.7
Q ss_pred CChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCC
Q 007106 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~ 200 (618)
++|+-|.++|. ..+.+++|.|..|||||.+.+--++..+... ..-.++|+|+=|+..|..+.+++.+.+...
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~------~~~~~il~~tFt~~aa~e~~~ri~~~l~~~ 72 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG------VDIDRLLVVTFTNAAAREMKERIEEALQKA 72 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC------CCHhhEEEEeccHHHHHHHHHHHHHHHHHH
Confidence 36899999997 3577999999999999998776666666431 112469999999999999888887653210
Q ss_pred cEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCC--CccEEEEchhhh
Q 007106 201 DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLS--EVQFVVLDEADQ 256 (618)
Q Consensus 201 ~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~--~~~~vViDEaH~ 256 (618)
-. .........+.+..-...-|+|...+...+.+.....- +..+=|.||...
T Consensus 73 ~~----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 73 LQ----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred Hh----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 00 00011111222333346778999998654433322222 234567898875
No 272
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.04 E-value=0.11 Score=54.64 Aligned_cols=52 Identities=13% Similarity=0.263 Sum_probs=32.6
Q ss_pred ccEEEEchhhhhcc-CCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHh
Q 007106 246 VQFVVLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY 297 (618)
Q Consensus 246 ~~~vViDEaH~~~~-~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~ 297 (618)
.++||||.+-+... ...-..+..+.....++.-++.++||...+....+..|
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 48899999954321 11334455555556667778888998876555555443
No 273
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.01 E-value=0.051 Score=57.80 Aligned_cols=108 Identities=12% Similarity=0.138 Sum_probs=58.5
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHH
Q 007106 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 217 (618)
.+++.|++|+|||... .++...+... ..+.+++++.+ .++..++...+....
T Consensus 143 pl~i~G~~G~GKTHLl-~Ai~~~l~~~------~~~~~v~yv~~-~~f~~~~~~~l~~~~-------------------- 194 (450)
T PRK14087 143 PLFIYGESGMGKTHLL-KAAKNYIESN------FSDLKVSYMSG-DEFARKAVDILQKTH-------------------- 194 (450)
T ss_pred ceEEECCCCCcHHHHH-HHHHHHHHHh------CCCCeEEEEEH-HHHHHHHHHHHHHhh--------------------
Confidence 4889999999999643 3444444321 12445665555 566666665554210
Q ss_pred hhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCC-cHHHHHHHHHhCCC-CCcEEEEEecCChH
Q 007106 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQ-NRQSMMFSATMPPW 289 (618)
Q Consensus 218 l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~-~~~~~~~il~~l~~-~~~~l~lSAT~~~~ 289 (618)
+.+..+... +.++++|||||+|.+.... ....+..++..+.. ..|+|+.|-.+|..
T Consensus 195 ------------~~~~~~~~~----~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~ 252 (450)
T PRK14087 195 ------------KEIEQFKNE----ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPEL 252 (450)
T ss_pred ------------hHHHHHHHH----hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHH
Confidence 111111111 4567899999999765321 23444555554433 34555544444433
No 274
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.98 E-value=0.074 Score=48.12 Aligned_cols=52 Identities=25% Similarity=0.386 Sum_probs=39.9
Q ss_pred CCCccEEEEchhhhhccCCc--HHHHHHHHHhCCCCCcEEEEEecCChHHHHHH
Q 007106 243 LSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWIRSLT 294 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~~~--~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~ 294 (618)
-..+++||+||+-..++.++ ...+..+++.-|+...+|++.-.+|+.+.+++
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~A 148 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELA 148 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 45789999999998776653 45666777777778888888888888766654
No 275
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.97 E-value=0.058 Score=60.97 Aligned_cols=108 Identities=19% Similarity=0.140 Sum_probs=71.0
Q ss_pred ChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCc
Q 007106 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD 201 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~ 201 (618)
|++-|++++... ..+++|.|..|||||.+.+.-+...+.... -....+|+|+.|+..|.+..+++.+.++..
T Consensus 2 Ln~~Q~~av~~~--~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~-----~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~- 73 (664)
T TIGR01074 2 LNPQQQEAVEYV--TGPCLVLAGAGSGKTRVITNKIAYLIQNCG-----YKARNIAAVTFTNKAAREMKERVAKTLGKG- 73 (664)
T ss_pred CCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHhCcc-
Confidence 789999998653 458999999999999876555555443211 113469999999999999999998764310
Q ss_pred EEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcC---CCCCCccEEEEchhhh
Q 007106 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA---LNLSEVQFVVLDEADQ 256 (618)
Q Consensus 202 ~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~---~~l~~~~~vViDEaH~ 256 (618)
....+.|.|...|...+.+.. ..+ .-.+-|+||.+.
T Consensus 74 ------------------~~~~v~v~TfHs~a~~il~~~~~~~g~-~~~~~il~~~~~ 112 (664)
T TIGR01074 74 ------------------EARGLTISTFHTLGLDIIKREYNALGY-KSNFSLFDETDQ 112 (664)
T ss_pred ------------------ccCCeEEEeHHHHHHHHHHHHHHHhCC-CCCCEEeCHHHH
Confidence 113577889888854433221 111 123456777763
No 276
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.95 E-value=0.038 Score=58.31 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=26.1
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHH
Q 007106 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 190 (618)
.+++.+++|+|||..+ .++...+.+. ..+..++++.. ..+..++.
T Consensus 138 ~l~l~G~~G~GKThL~-~ai~~~l~~~------~~~~~v~yi~~-~~~~~~~~ 182 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL-HAIGNEILEN------NPNAKVVYVSS-EKFTNDFV 182 (405)
T ss_pred eEEEECCCCCcHHHHH-HHHHHHHHHh------CCCCcEEEEEH-HHHHHHHH
Confidence 4789999999999754 4444444331 11345666643 34444433
No 277
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.93 E-value=0.043 Score=58.17 Aligned_cols=109 Identities=11% Similarity=0.160 Sum_probs=58.4
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhH
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~ 216 (618)
..+++.+++|+|||..+ .++...+.+ .+.+++++.. ..+..+....+..-
T Consensus 142 npl~L~G~~G~GKTHLl-~Ai~~~l~~--------~~~~v~yi~~-~~f~~~~~~~l~~~-------------------- 191 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLM-QAAVHALRE--------SGGKILYVRS-ELFTEHLVSAIRSG-------------------- 191 (445)
T ss_pred ceEEEEcCCCCCHHHHH-HHHHHHHHH--------cCCCEEEeeH-HHHHHHHHHHHhcc--------------------
Confidence 35899999999999744 344444432 1345666654 45554443333210
Q ss_pred HhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCC-cHHHHHHHHHhCC-CCCcEEEEEecCChHHHHH
Q 007106 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLP-QNRQSMMFSATMPPWIRSL 293 (618)
Q Consensus 217 ~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~-~~~~~~~il~~l~-~~~~~l~lSAT~~~~~~~~ 293 (618)
+.+.+.. .+...++|||||+|.+.... ....+..++..+. ...++|+.|-+.|..+..+
T Consensus 192 -----------~~~~f~~-------~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 192 -----------EMQRFRQ-------FYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred -----------hHHHHHH-------HcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 0111111 13467899999999875432 2334444444332 3456666555556554433
No 278
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.84 E-value=0.072 Score=56.60 Aligned_cols=111 Identities=11% Similarity=0.208 Sum_probs=56.5
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHH
Q 007106 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 217 (618)
.+++.+++|+|||..+ .++...+.+. ..+.+++++.. ..+.++....+...
T Consensus 132 ~l~lyG~~G~GKTHLl-~ai~~~l~~~------~~~~~v~yi~~-~~f~~~~~~~~~~~--------------------- 182 (440)
T PRK14088 132 PLFIYGGVGLGKTHLL-QSIGNYVVQN------EPDLRVMYITS-EKFLNDLVDSMKEG--------------------- 182 (440)
T ss_pred eEEEEcCCCCcHHHHH-HHHHHHHHHh------CCCCeEEEEEH-HHHHHHHHHHHhcc---------------------
Confidence 5899999999999754 3344443321 11345666654 34444444333210
Q ss_pred hhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCC-cHHHHHHHHHhCCC-CCcEEEEEecCChHHHHH
Q 007106 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQ-NRQSMMFSATMPPWIRSL 293 (618)
Q Consensus 218 l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~-~~~~~~~il~~l~~-~~~~l~lSAT~~~~~~~~ 293 (618)
+.+.+...+. .+.++|||||+|.+.+.. ....+..++..+.. ..++|+.|-..|..+..+
T Consensus 183 ----------~~~~f~~~~~------~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 183 ----------KLNEFREKYR------KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred ----------cHHHHHHHHH------hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH
Confidence 0111211111 257789999999876532 12334444444432 345555444455444333
No 279
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.83 E-value=0.035 Score=60.31 Aligned_cols=107 Identities=13% Similarity=0.159 Sum_probs=58.0
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHH
Q 007106 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 217 (618)
.++|.+++|+|||..+ .++...+.+. ..+.+++++. ..++++++...+.+.
T Consensus 316 pL~LyG~sGsGKTHLL-~AIa~~a~~~------~~g~~V~Yit-aeef~~el~~al~~~--------------------- 366 (617)
T PRK14086 316 PLFIYGESGLGKTHLL-HAIGHYARRL------YPGTRVRYVS-SEEFTNEFINSIRDG--------------------- 366 (617)
T ss_pred cEEEECCCCCCHHHHH-HHHHHHHHHh------CCCCeEEEee-HHHHHHHHHHHHHhc---------------------
Confidence 3899999999999743 2333333220 1134455544 456666554444320
Q ss_pred hhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCC-cHHHHHHHHHhCCC-CCcEEEEEecCChHH
Q 007106 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQ-NRQSMMFSATMPPWI 290 (618)
Q Consensus 218 l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~-~~~~~~~il~~l~~-~~~~l~lSAT~~~~~ 290 (618)
..+.+.. .+.++++|||||+|.+.... ....+..+++.+.. +.++|+.|-..|..+
T Consensus 367 ----------~~~~f~~-------~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 367 ----------KGDSFRR-------RYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred ----------cHHHHHH-------HhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 0011111 14567899999999875432 23445555555543 456666555555443
No 280
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.82 E-value=0.037 Score=55.73 Aligned_cols=143 Identities=15% Similarity=0.181 Sum_probs=69.5
Q ss_pred CCChHHHHHHHHHHhC----CC---CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHH
Q 007106 120 SKLFPIQKAVLEPAMQ----GR---DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~----~~---~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~ 192 (618)
..++|+|..++..+.+ ++ -+|+.+|.|+||+..+.. +...++.... . .+. .|+. .+.
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~-lA~~LlC~~~-~----~~~---~c~~-------c~~ 66 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA-LAEHVLASGP-D----PAA---AQRT-------RQL 66 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHhCCCC-C----CCC---cchH-------HHH
Confidence 4578999988877653 22 389999999999976543 3334332110 0 000 1221 111
Q ss_pred HH-HhCCCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHH
Q 007106 193 FH-ESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271 (618)
Q Consensus 193 l~-~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~ 271 (618)
+. ...|++..+......... +....|.|-..-.+.+.+..... ....+++||||||.|... -...+.++++
T Consensus 67 ~~~g~HPD~~~i~~~p~~~~~------k~~~~I~idqIR~l~~~~~~~p~-~g~~kV~iI~~ae~m~~~-AaNaLLKtLE 138 (319)
T PRK08769 67 IAAGTHPDLQLVSFIPNRTGD------KLRTEIVIEQVREISQKLALTPQ-YGIAQVVIVDPADAINRA-ACNALLKTLE 138 (319)
T ss_pred HhcCCCCCEEEEecCCCcccc------cccccccHHHHHHHHHHHhhCcc-cCCcEEEEeccHhhhCHH-HHHHHHHHhh
Confidence 11 112332222101100000 00012322222223333322222 346789999999998543 3444555666
Q ss_pred hCCCCCcEEEEEecC
Q 007106 272 RLPQNRQSMMFSATM 286 (618)
Q Consensus 272 ~l~~~~~~l~lSAT~ 286 (618)
.-+.++.+|++|..+
T Consensus 139 EPp~~~~fiL~~~~~ 153 (319)
T PRK08769 139 EPSPGRYLWLISAQP 153 (319)
T ss_pred CCCCCCeEEEEECCh
Confidence 656666677766543
No 281
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.81 E-value=0.082 Score=45.64 Aligned_cols=15 Identities=33% Similarity=0.397 Sum_probs=12.9
Q ss_pred EEEEccCCChhHHHH
Q 007106 139 MIGRARTGTGKTLAF 153 (618)
Q Consensus 139 ~ll~~~tGsGKT~~~ 153 (618)
+++.+|+|+|||..+
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 689999999999744
No 282
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.81 E-value=0.19 Score=51.49 Aligned_cols=130 Identities=15% Similarity=0.183 Sum_probs=71.0
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcC-cHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhh
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP-TRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~P-t~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~ 214 (618)
++.+.+.+|||.|||.+..-.+....+.. .....+||..- .|.=|..+...+.+... +
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~------~~~kVaiITtDtYRIGA~EQLk~Ya~im~-v-------------- 261 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK------KKKKVAIITTDTYRIGAVEQLKTYADIMG-V-------------- 261 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc------cCcceEEEEeccchhhHHHHHHHHHHHhC-C--------------
Confidence 56689999999999976433333222111 11223344433 33333333333333211 1
Q ss_pred hHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhc-cCCcHHHHHHHHHhCCCCCcEEEEEecCCh-HHHH
Q 007106 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML-SVGFAEDVEVILERLPQNRQSMMFSATMPP-WIRS 292 (618)
Q Consensus 215 ~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~-~~~~~~~~~~il~~l~~~~~~l~lSAT~~~-~~~~ 292 (618)
+-.++-+|..|...+.. +.++++|.||=+-+-. |......++.++....+.--.+.+|||... .+++
T Consensus 262 -------p~~vv~~~~el~~ai~~----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlke 330 (407)
T COG1419 262 -------PLEVVYSPKELAEAIEA----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKE 330 (407)
T ss_pred -------ceEEecCHHHHHHHHHH----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHH
Confidence 22456677777766664 7788999999887521 211334455555554444456889999864 3444
Q ss_pred HHHHh
Q 007106 293 LTNKY 297 (618)
Q Consensus 293 ~~~~~ 297 (618)
....|
T Consensus 331 i~~~f 335 (407)
T COG1419 331 IIKQF 335 (407)
T ss_pred HHHHh
Confidence 44444
No 283
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.79 E-value=0.094 Score=58.92 Aligned_cols=43 Identities=14% Similarity=0.181 Sum_probs=26.5
Q ss_pred CccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHH
Q 007106 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRS 292 (618)
Q Consensus 245 ~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~ 292 (618)
...++||||+|++.. .....++..+ .+.++++++||-++....
T Consensus 109 ~~~IL~IDEIh~Ln~----~qQdaLL~~l-E~g~IiLI~aTTenp~~~ 151 (725)
T PRK13341 109 KRTILFIDEVHRFNK----AQQDALLPWV-ENGTITLIGATTENPYFE 151 (725)
T ss_pred CceEEEEeChhhCCH----HHHHHHHHHh-cCceEEEEEecCCChHhh
Confidence 456899999998632 2333444444 345678888876554333
No 284
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=95.77 E-value=0.068 Score=56.50 Aligned_cols=148 Identities=13% Similarity=0.084 Sum_probs=85.1
Q ss_pred CCCChHHHHHHHHHHhC----C------CCEEEEccCCChhHHHHH-HHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHH
Q 007106 119 ISKLFPIQKAVLEPAMQ----G------RDMIGRARTGTGKTLAFG-IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (618)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~----~------~~~ll~~~tGsGKT~~~l-~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (618)
++.+-|+|+-++-.+.- + +..+|..|-+-|||..+. +.+...+..+ ..+..+.|++|+.+.+.
T Consensus 59 p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~------~~~~~~~i~A~s~~qa~ 132 (546)
T COG4626 59 PESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW------RSGAGIYILAPSVEQAA 132 (546)
T ss_pred ccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh------hcCCcEEEEeccHHHHH
Confidence 35688999999988772 1 247899999999996544 3333334333 23678999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHH---HHHHHh--cCCCCCCccEEEEchhhhhccCCc
Q 007106 188 QVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV---IDLIKR--NALNLSEVQFVVLDEADQMLSVGF 262 (618)
Q Consensus 188 q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l---~~~l~~--~~~~l~~~~~vViDEaH~~~~~~~ 262 (618)
+.+..++.+....+ .. ........+....++... +..+.. ...+-.+..++|+||.|.+.+.
T Consensus 133 ~~F~~ar~mv~~~~--------~l---~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~-- 199 (546)
T COG4626 133 NSFNPARDMVKRDD--------DL---RDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQ-- 199 (546)
T ss_pred HhhHHHHHHHHhCc--------ch---hhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCH--
Confidence 99988877643222 00 000111112212222222 222222 2233345679999999986542
Q ss_pred HHHHHHHHHhC--CCCCcEEEEEec
Q 007106 263 AEDVEVILERL--PQNRQSMMFSAT 285 (618)
Q Consensus 263 ~~~~~~il~~l--~~~~~~l~lSAT 285 (618)
...+..+..-+ +++.+++..|..
T Consensus 200 ~~~~~~~~~g~~ar~~~l~~~ITT~ 224 (546)
T COG4626 200 EDMYSEAKGGLGARPEGLVVYITTS 224 (546)
T ss_pred HHHHHHHHhhhccCcCceEEEEecC
Confidence 13344444333 345666666653
No 285
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.75 E-value=0.081 Score=56.09 Aligned_cols=90 Identities=18% Similarity=0.180 Sum_probs=60.4
Q ss_pred CCCHHH-HHHHHHcCCCCCh----HHHHHHHHHHhCCC--CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEE
Q 007106 105 DISQDI-VAALARRGISKLF----PIQKAVLEPAMQGR--DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (618)
Q Consensus 105 ~l~~~l-~~~l~~~~~~~l~----~~Q~~~i~~i~~~~--~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~l 177 (618)
...+++ +..|.+..-.+++ .+|++-=+.|...+ -++|++..|||||.+++--+...+..+..... ...+|
T Consensus 188 ~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~---~k~vl 264 (747)
T COG3973 188 GGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQ---AKPVL 264 (747)
T ss_pred chHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccc---cCceE
Confidence 444444 4556655444444 35655555555443 48999999999999988777666666555432 34499
Q ss_pred EEcCcHHHHHHHHHHHHHhC
Q 007106 178 VLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 178 il~Pt~~La~q~~~~l~~~~ 197 (618)
|+.|++.++.=+.+.|-++.
T Consensus 265 vl~PN~vFleYis~VLPeLG 284 (747)
T COG3973 265 VLGPNRVFLEYISRVLPELG 284 (747)
T ss_pred EEcCcHHHHHHHHHhchhhc
Confidence 99999999887777665553
No 286
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.75 E-value=0.047 Score=62.26 Aligned_cols=108 Identities=19% Similarity=0.240 Sum_probs=71.2
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC
Q 007106 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~ 199 (618)
..|++-|++++... ...++|.|..|||||.+...-+...+.... -...++|+++-|+..|..+.+++.+++..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~-----i~P~~IL~lTFT~kAA~em~~Rl~~~~~~ 75 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKN-----VAPWNILAITFTNKAAREMKERVEKLLGP 75 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCC-----CCHHHeeeeeccHHHHHHHHHHHHHHhcc
Confidence 35899999999754 457999999999999876555554443211 11247999999999999999999876431
Q ss_pred CcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHH-HHHhcC--CCCCCccEEEEchhh
Q 007106 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVID-LIKRNA--LNLSEVQFVVLDEAD 255 (618)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~-~l~~~~--~~l~~~~~vViDEaH 255 (618)
....+.|+|...|.. ++.... +.+ .-.+-|+|+.+
T Consensus 76 --------------------~~~~~~i~TFHs~~~~iLr~~~~~~g~-~~~f~i~d~~~ 113 (726)
T TIGR01073 76 --------------------VAEDIWISTFHSMCVRILRRDIDRIGI-NRNFSIIDPTD 113 (726)
T ss_pred --------------------ccCCcEEEcHHHHHHHHHHHHHHHhCC-CCCCCcCCHHH
Confidence 012567888888743 333321 111 12345677765
No 287
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.74 E-value=0.094 Score=50.46 Aligned_cols=53 Identities=9% Similarity=0.031 Sum_probs=33.0
Q ss_pred hCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007106 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 134 ~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
..+.-+++.+++|+|||..++..+...+ + ++.++++++. .+-..+..+.+..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~-~--------~g~~~~yi~~-e~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFL-Q--------NGYSVSYVST-QLTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH-h--------CCCcEEEEeC-CCCHHHHHHHHHHh
Confidence 3455689999999999986544444332 2 1456788874 34445555555443
No 288
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.69 E-value=0.091 Score=51.71 Aligned_cols=113 Identities=16% Similarity=0.296 Sum_probs=57.8
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHH-HhhhcC--CCCCCeEEEEcCcHHHHHHHHHHHHHhC-CCCcEEEEEcCcchh
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIK-FNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESA-PSLDTICVYGGTPIS 212 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~-~~~~~~--~~~~~~~lil~Pt~~La~q~~~~l~~~~-~~~~~~~~~g~~~~~ 212 (618)
.+++|.++|+.|||... ....+ +..... ...-+.++|-+|...-....+..+-..+ -..+. .....
T Consensus 62 p~lLivG~snnGKT~Ii-----~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~-----~~~~~ 131 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII-----ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP-----RDRVA 131 (302)
T ss_pred CceEEecCCCCcHHHHH-----HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC-----CCCHH
Confidence 47999999999999732 33222 111111 1112455666777666666666654432 11110 01100
Q ss_pred hhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCc--HHHHHHHHHhCCCCCc
Q 007106 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQ 278 (618)
Q Consensus 213 ~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~--~~~~~~il~~l~~~~~ 278 (618)
. +. .....++. .-.++++||||+|.++.-.. ...+..+++.+.+..+
T Consensus 132 ~----~~----------~~~~~llr-----~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ 180 (302)
T PF05621_consen 132 K----LE----------QQVLRLLR-----RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQ 180 (302)
T ss_pred H----HH----------HHHHHHHH-----HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccC
Confidence 0 00 01123333 34678999999999876532 2333444555555444
No 289
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.68 E-value=0.1 Score=50.59 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=36.6
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
+..++|.+++|+|||..++..+...+.+ +.++++++ +.+-..++.+.+..+.
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~---------ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM---------GEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc---------CCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 4568999999999998776655555432 55677777 4566677777666543
No 290
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.67 E-value=0.065 Score=57.11 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=16.3
Q ss_pred CCEEEEccCCChhHHHHHHH
Q 007106 137 RDMIGRARTGTGKTLAFGIP 156 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~ 156 (618)
+.+|+.+|.|+|||.++.+.
T Consensus 36 ha~Lf~Gp~G~GKTT~Aril 55 (491)
T PRK14964 36 QSILLVGASGVGKTTCARII 55 (491)
T ss_pred ceEEEECCCCccHHHHHHHH
Confidence 35999999999999876543
No 291
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.62 E-value=0.13 Score=59.44 Aligned_cols=79 Identities=11% Similarity=0.184 Sum_probs=64.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCccE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~ 248 (618)
+.+++|+||+++-++.+++.+++.++++++.++||..+..++.+.+. ...+||||| + +-...+++.++++
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT-----~-iie~GIDIp~v~~ 733 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCT-----T-IIETGIDIPNANT 733 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----C-hhhcccccccCCE
Confidence 67899999999999999999999888899999999988766554333 358999999 3 4445677999999
Q ss_pred EEEchhhhh
Q 007106 249 VVLDEADQM 257 (618)
Q Consensus 249 vViDEaH~~ 257 (618)
||++.++++
T Consensus 734 VIi~~a~~~ 742 (926)
T TIGR00580 734 IIIERADKF 742 (926)
T ss_pred EEEecCCCC
Confidence 999999863
No 292
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.58 E-value=0.2 Score=56.11 Aligned_cols=41 Identities=12% Similarity=0.284 Sum_probs=23.2
Q ss_pred CCccEEEEchhhhhccCCcHHHHHHHHHhCC-CCCcEEEEEec
Q 007106 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSMMFSAT 285 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~-~~~~~l~lSAT 285 (618)
..+.+|||||+|.+... ....+..+++... ...+++++..+
T Consensus 868 r~v~IIILDEID~L~kK-~QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITK-TQKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred ccceEEEeehHhhhCcc-HHHHHHHHHHHhhccCCeEEEEEec
Confidence 45678999999988754 2344444554332 23444443333
No 293
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.56 E-value=0.041 Score=59.37 Aligned_cols=39 Identities=13% Similarity=0.209 Sum_probs=24.9
Q ss_pred CCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEE
Q 007106 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
.+++++||||+|+|.... ...+.+.++..+..+.+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a-~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHS-FNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHH-HHHHHHHHhccCCCeEEEEEE
Confidence 467899999999875432 233444555555566666554
No 294
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.56 E-value=0.27 Score=55.06 Aligned_cols=68 Identities=12% Similarity=0.170 Sum_probs=39.7
Q ss_pred EEChHHHHHHHHhcCCCCCCccEEEEchhhhhccC-CcHHHHHHHHHhCCCCCcEEEEEecCChH-HHHHHHHh
Q 007106 226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPW-IRSLTNKY 297 (618)
Q Consensus 226 v~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~-~~~~~~~~il~~l~~~~~~l~lSAT~~~~-~~~~~~~~ 297 (618)
+.+|..+.+.+.. +.+.++|+||=+=+.... .....+..+.....+...+++++||.... +.+....|
T Consensus 248 ~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 248 VKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred cCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHH
Confidence 3467777666654 556789999988865322 12233333333344555688899997543 33344444
No 295
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.11 Score=55.25 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=36.8
Q ss_pred CCCCCCCCccCCCCCHHHHHHHHHc---CCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007106 93 SSKDEGLDISKLDISQDIVAALARR---GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~l~~~---~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~ 153 (618)
....+..+|++++--.++...|+.. .+.+ |-+-+++- +..-..+|+++|+|||||+.+
T Consensus 502 F~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~--pd~~k~lG-i~~PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 502 FATVPDVTWDDIGALEEVRLELNMAILAPIKR--PDLFKALG-IDAPSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred ceecCCCChhhcccHHHHHHHHHHHHhhhccC--HHHHHHhC-CCCCCceEEeCCCCccHHHHH
Confidence 3446778888888777777777542 3332 22333331 122356999999999999844
No 296
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.55 E-value=0.062 Score=58.14 Aligned_cols=130 Identities=19% Similarity=0.169 Sum_probs=78.8
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC----CCcEEEEEcCcchh
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP----SLDTICVYGGTPIS 212 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~----~~~~~~~~g~~~~~ 212 (618)
+-.++..|=-.|||.... +++..++.. -.+-++++++|.+..++.+++++...+. .-.+..+.+ ..+
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s------~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I- 325 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALAT------FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI- 325 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHh------CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE-
Confidence 457889999999997554 555544331 1267899999999999999998876432 212222222 111
Q ss_pred hhhHHhhcC--CCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhC-CCCCcEEEEEecCC
Q 007106 213 HQMRALDYG--VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMMFSATMP 287 (618)
Q Consensus 213 ~~~~~l~~~--~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l-~~~~~~l~lSAT~~ 287 (618)
.-.+.++ ..|.+.+ .-..+...=..++++|||||+.+.+ ..+..++-.+ ..++++|++|.|-.
T Consensus 326 --~i~f~nG~kstI~FaS------arntNsiRGqtfDLLIVDEAqFIk~----~al~~ilp~l~~~n~k~I~ISS~Ns 391 (738)
T PHA03368 326 --SFSFPDGSRSTIVFAS------SHNTNGIRGQDFNLLFVDEANFIRP----DAVQTIMGFLNQTNCKIIFVSSTNT 391 (738)
T ss_pred --EEEecCCCccEEEEEe------ccCCCCccCCcccEEEEechhhCCH----HHHHHHHHHHhccCccEEEEecCCC
Confidence 0012222 2566664 1111223345789999999997754 3444444333 24889999998853
No 297
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.52 E-value=0.14 Score=54.48 Aligned_cols=91 Identities=16% Similarity=0.174 Sum_probs=52.3
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhh
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~ 215 (618)
+.-+++.+++|+|||...+..+.... + .+.+++++.- .+...|+......+........+...
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a-~--------~g~~vlYvs~-Ees~~qi~~ra~rlg~~~~~l~~~~e------- 142 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLA-A--------AGGKVLYVSG-EESASQIKLRAERLGLPSDNLYLLAE------- 142 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH-h--------cCCeEEEEEc-cccHHHHHHHHHHcCCChhcEEEeCC-------
Confidence 34589999999999975544443332 1 1457888875 45566776666554321111111000
Q ss_pred HHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhcc
Q 007106 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (618)
Q Consensus 216 ~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~ 259 (618)
...+.+...+.. .+.++||||+++.+..
T Consensus 143 -----------~~l~~i~~~i~~-----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 143 -----------TNLEAILATIEE-----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred -----------CCHHHHHHHHHh-----hCCCEEEEechhhhcc
Confidence 123344444432 3578999999997754
No 298
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.50 E-value=0.069 Score=54.29 Aligned_cols=41 Identities=12% Similarity=0.216 Sum_probs=27.0
Q ss_pred CCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEe
Q 007106 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSA 284 (618)
...++|||||+|.+........+..+++..+..+++|+.|.
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 35678999999987333244556666777666676666443
No 299
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=95.49 E-value=0.2 Score=45.48 Aligned_cols=141 Identities=15% Similarity=0.140 Sum_probs=77.5
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHh
Q 007106 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218 (618)
Q Consensus 139 ~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l 218 (618)
+.|.--.|-|||.+++--++..+ +.+.+++|+.=.+--...=...+.+.++.+.... .+..........
T Consensus 24 i~VYtGdGKGKTTAAlGlalRAa---------G~G~rV~iiQFlKg~~~~GE~~~l~~~~~v~~~~--~g~~~~~~~~~~ 92 (178)
T PRK07414 24 VQVFTSSQRNFFTSVMAQALRIA---------GQGTPVLIVQFLKGGIQQGPDRPIQLGQNLDWVR--CDLPRCLDTPHL 92 (178)
T ss_pred EEEEeCCCCCchHHHHHHHHHHh---------cCCCEEEEEEEecCCCcchHHHHHHhCCCcEEEE--CCCCCeeeCCCc
Confidence 66777889999999988888775 4578888886433321111112222333333222 111100000000
Q ss_pred hcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCc--HHHHHHHHHhCCCCCcEEEEEecCChHHHHHH
Q 007106 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWIRSLT 294 (618)
Q Consensus 219 ~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~--~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~ 294 (618)
.. .-.......+..... .+.-..+++||+||+-..++.++ ...+..+++..|....+|++--.+|+++.+++
T Consensus 93 ~~---~~~~~~~~~~~~a~~-~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~A 166 (178)
T PRK07414 93 DE---SEKKALQELWQYTQA-VVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIA 166 (178)
T ss_pred CH---HHHHHHHHHHHHHHH-HHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 00 000011112222211 22245789999999998877664 46677777777788888888888888766654
No 300
>PLN03025 replication factor C subunit; Provisional
Probab=95.48 E-value=0.15 Score=51.93 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=23.8
Q ss_pred CCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEec
Q 007106 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT 285 (618)
...++|||||+|.|... ....+...++..+..+.+++ +++
T Consensus 98 ~~~kviiiDE~d~lt~~-aq~aL~~~lE~~~~~t~~il-~~n 137 (319)
T PLN03025 98 GRHKIVILDEADSMTSG-AQQALRRTMEIYSNTTRFAL-ACN 137 (319)
T ss_pred CCeEEEEEechhhcCHH-HHHHHHHHHhcccCCceEEE-EeC
Confidence 35789999999987543 23344455554444454444 444
No 301
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.46 E-value=0.094 Score=57.16 Aligned_cols=43 Identities=14% Similarity=0.257 Sum_probs=25.7
Q ss_pred CCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecC
Q 007106 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~ 286 (618)
...++++||||+|+|....+ ..+.+.++.-+.++.+|+.|--+
T Consensus 122 ~gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred cCCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEeCCh
Confidence 34688999999998854322 23333444444556666655443
No 302
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.44 E-value=0.27 Score=48.27 Aligned_cols=128 Identities=10% Similarity=0.133 Sum_probs=68.6
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcC-c--HHHHHHHHHHHHHhCCCCcEEEEEcCcchh
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP-T--RELAKQVEKEFHESAPSLDTICVYGGTPIS 212 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~P-t--~~La~q~~~~l~~~~~~~~~~~~~g~~~~~ 212 (618)
+..+++.+++|+|||..+...+... .. .+..+.++.- + ...+.||....... .
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l-~~--------~~~~v~~i~~D~~ri~~~~ql~~~~~~~----~----------- 130 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQF-HG--------KKKTVGFITTDHSRIGTVQQLQDYVKTI----G----------- 130 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH-HH--------cCCeEEEEecCCCCHHHHHHHHHHhhhc----C-----------
Confidence 3568999999999998654433322 11 1334444432 2 24556665443322 1
Q ss_pred hhhHHhhcCCCEEE-EChHHHHHHHHhcCCCCCCccEEEEchhhhhccC-CcHHHHHHHHHhCCCCCcEEEEEecCCh-H
Q 007106 213 HQMRALDYGVDAVV-GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPP-W 289 (618)
Q Consensus 213 ~~~~~l~~~~~Ilv-~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~-~~~~~~~~il~~l~~~~~~l~lSAT~~~-~ 289 (618)
+++.. .++..+...+..-. ...++++||||.+=+.... ..-..+.+++....+...++++|||... .
T Consensus 131 ---------~~~~~~~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d 200 (270)
T PRK06731 131 ---------FEVIAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 200 (270)
T ss_pred ---------ceEEecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHH
Confidence 12222 34555544443211 1346899999999765321 1233344455555555557789998754 5
Q ss_pred HHHHHHHh
Q 007106 290 IRSLTNKY 297 (618)
Q Consensus 290 ~~~~~~~~ 297 (618)
..+.+..|
T Consensus 201 ~~~~~~~f 208 (270)
T PRK06731 201 MIEIITNF 208 (270)
T ss_pred HHHHHHHh
Confidence 55555554
No 303
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.43 E-value=0.055 Score=48.92 Aligned_cols=44 Identities=18% Similarity=0.320 Sum_probs=30.4
Q ss_pred CCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCCh
Q 007106 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~ 288 (618)
...+++||||||.|... ....+.+.++.-+.+..+|++|..+..
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~~ 144 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPSK 144 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GGG
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChHH
Confidence 46889999999987543 455566666766777777777766554
No 304
>PRK10689 transcription-repair coupling factor; Provisional
Probab=95.41 E-value=0.067 Score=63.25 Aligned_cols=79 Identities=14% Similarity=0.195 Sum_probs=65.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCccE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~ 248 (618)
+.+++|+||+++.++.+++.+.+.++.+++.++|+..+..++.+.+. ...+||||| + +....+++.++++
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaT-----d-IierGIDIP~v~~ 882 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT-----T-IIETGIDIPTANT 882 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEC-----c-hhhcccccccCCE
Confidence 56899999999999999999999988899999999987766544332 458999999 3 4445677999999
Q ss_pred EEEchhhhh
Q 007106 249 VVLDEADQM 257 (618)
Q Consensus 249 vViDEaH~~ 257 (618)
||++.++++
T Consensus 883 VIi~~ad~f 891 (1147)
T PRK10689 883 IIIERADHF 891 (1147)
T ss_pred EEEecCCCC
Confidence 999998864
No 305
>PRK05973 replicative DNA helicase; Provisional
Probab=95.40 E-value=0.13 Score=49.40 Aligned_cols=83 Identities=14% Similarity=0.151 Sum_probs=49.3
Q ss_pred CCCCHHHHHHHHHcCCCCChHHH---------HHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007106 104 LDISQDIVAALARRGISKLFPIQ---------KAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (618)
Q Consensus 104 ~~l~~~l~~~l~~~~~~~l~~~Q---------~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~ 174 (618)
+++++.+-+.-.+.||....-.. .+...-+..+.-++|.|++|+|||+.++..+...+.+ +.
T Consensus 23 ~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---------Ge 93 (237)
T PRK05973 23 IPLHEALDRIAAEEGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS---------GR 93 (237)
T ss_pred CcHHHHHHHHHHHhccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc---------CC
Confidence 44555554444455554332222 2233344555668999999999998766555554422 55
Q ss_pred eEEEEcCcHHHHHHHHHHHHHh
Q 007106 175 LCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 175 ~~lil~Pt~~La~q~~~~l~~~ 196 (618)
+++|++- .+-.+|+.+++..+
T Consensus 94 ~vlyfSl-Ees~~~i~~R~~s~ 114 (237)
T PRK05973 94 TGVFFTL-EYTEQDVRDRLRAL 114 (237)
T ss_pred eEEEEEE-eCCHHHHHHHHHHc
Confidence 6777754 34467777777655
No 306
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.36 E-value=0.16 Score=53.95 Aligned_cols=116 Identities=17% Similarity=0.160 Sum_probs=56.8
Q ss_pred hCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEE-EcCcchh
Q 007106 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPIS 212 (618)
Q Consensus 134 ~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~-~g~~~~~ 212 (618)
..+.-++|.|.+|+|||..++..+.....+ .+..++|++. ..-..|+..++.....++....+ .+.....
T Consensus 192 ~~g~liviag~pg~GKT~~al~ia~~~a~~--------~g~~v~~fSl-Em~~~~l~~Rl~~~~~~v~~~~~~~~~l~~~ 262 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTTLALNIAENVALR--------EGKPVLFFSL-EMSAEQLGERLLASKSGINTGNIRTGRFNDS 262 (421)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEEC-CCCHHHHHHHHHHHHcCCCHHHHhcCCCCHH
Confidence 334558999999999997655444343322 1445677652 33444555554332222222111 1111111
Q ss_pred hh------hHHhhcCCCEEEE-----ChHHHHHHHHhcCCCCCCccEEEEchhhhhcc
Q 007106 213 HQ------MRALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (618)
Q Consensus 213 ~~------~~~l~~~~~Ilv~-----T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~ 259 (618)
++ ...+. ..++.|. |.+.+...+.+-......+++||||=.|.+..
T Consensus 263 ~~~~~~~~~~~l~-~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~ 319 (421)
T TIGR03600 263 DFNRLLNAVDRLS-EKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAP 319 (421)
T ss_pred HHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCC
Confidence 11 11121 2344443 44555444433221123588999998887653
No 307
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.36 E-value=0.037 Score=51.97 Aligned_cols=16 Identities=31% Similarity=0.272 Sum_probs=14.1
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
++|+.+|+|+|||..+
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 5999999999999744
No 308
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.36 E-value=0.14 Score=54.13 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=23.4
Q ss_pred CccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCC
Q 007106 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (618)
Q Consensus 245 ~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~ 287 (618)
...+|+|||+|++. ......++..+. ...++++.+|..
T Consensus 92 ~~~vL~IDEi~~l~----~~~q~~LL~~le-~~~iilI~att~ 129 (413)
T PRK13342 92 RRTILFIDEIHRFN----KAQQDALLPHVE-DGTITLIGATTE 129 (413)
T ss_pred CceEEEEechhhhC----HHHHHHHHHHhh-cCcEEEEEeCCC
Confidence 45689999999863 233444455443 345666666643
No 309
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.31 E-value=0.096 Score=50.92 Aligned_cols=40 Identities=23% Similarity=0.060 Sum_probs=26.7
Q ss_pred hCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcC
Q 007106 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (618)
Q Consensus 134 ~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~P 181 (618)
..+.-++|.|++|+|||..++..++..+.+ .+..+++++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~--------~g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKK--------QGKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCceEEEeC
Confidence 344568999999999997655555444432 1456777773
No 310
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.30 E-value=0.22 Score=50.10 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=18.1
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHH
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i 161 (618)
.+.+++.+++|+|||..+. ++...+
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l 180 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANEL 180 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHH
Confidence 4579999999999997543 333333
No 311
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.28 E-value=0.19 Score=49.56 Aligned_cols=18 Identities=39% Similarity=0.405 Sum_probs=15.3
Q ss_pred CCEEEEccCCChhHHHHH
Q 007106 137 RDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l 154 (618)
.++++.+|+|+|||.++-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 468999999999998653
No 312
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.28 E-value=0.021 Score=60.15 Aligned_cols=18 Identities=33% Similarity=0.224 Sum_probs=15.0
Q ss_pred CEEEEccCCChhHHHHHH
Q 007106 138 DMIGRARTGTGKTLAFGI 155 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~l~ 155 (618)
.+|+.+|.|+|||.++.+
T Consensus 42 a~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 379999999999986643
No 313
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.26 E-value=0.028 Score=61.40 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=51.3
Q ss_pred CChHHHHHHHHHHhCC--CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHH-HHHHh
Q 007106 121 KLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK-EFHES 196 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~--~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~-~l~~~ 196 (618)
..+|||.+.++++... +.+++..++-+|||.+.+..+...+.. ....+|++.||..+|.++.+ +|..+
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~--------~P~~~l~v~Pt~~~a~~~~~~rl~Pm 86 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ--------DPGPMLYVQPTDDAAKDFSKERLDPM 86 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe--------CCCCEEEEEEcHHHHHHHHHHHHHHH
Confidence 5789999999988775 468999999999999665554444322 24569999999999998874 34443
No 314
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.22 E-value=0.059 Score=57.66 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=15.2
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
.+.+|+.+|+|+|||+.+
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 357999999999999743
No 315
>PRK04195 replication factor C large subunit; Provisional
Probab=95.20 E-value=0.15 Score=55.01 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.2
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
.+.+|+.+|+|+|||..+
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 356999999999999754
No 316
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=95.19 E-value=0.25 Score=44.76 Aligned_cols=142 Identities=21% Similarity=0.188 Sum_probs=74.6
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC-CCcEEEEEcCcchhhhhHH
Q 007106 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRA 217 (618)
Q Consensus 139 ~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~-~~~~~~~~g~~~~~~~~~~ 217 (618)
++|..-.|-|||.+++-.++..+ +.+.+++|+.=.+--...=.+.....++ .+....+-.+.. +....
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~---------GhG~rv~vvQFiKg~~~~GE~~~~~~~~~~v~~~~~~~g~t--w~~~~ 99 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRAL---------GHGLRVGVVQFIKGGWKYGEEAALEKFGLGVEFHGMGEGFT--WETQD 99 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHh---------cCCCEEEEEEEeecCcchhHHHHHHhhccceeEEecCCcee--CCCcC
Confidence 67778889999999888888776 4477888875322211111111111111 111111111100 00000
Q ss_pred hhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCc--HHHHHHHHHhCCCCCcEEEEEecCChHHHHHHH
Q 007106 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWIRSLTN 295 (618)
Q Consensus 218 l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~--~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~ 295 (618)
.+. ++ ............ .+.-..+++||+||+-..+..++ .+.+..++..-|.+..+|++--..|+.+.+++.
T Consensus 100 ~~~--d~--~aa~~~w~~a~~-~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~AD 174 (198)
T COG2109 100 REA--DI--AAAKAGWEHAKE-ALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELAD 174 (198)
T ss_pred cHH--HH--HHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHH
Confidence 000 11 111111111111 12234689999999997766553 456666777777788888888778887776654
Q ss_pred H
Q 007106 296 K 296 (618)
Q Consensus 296 ~ 296 (618)
.
T Consensus 175 l 175 (198)
T COG2109 175 L 175 (198)
T ss_pred H
Confidence 3
No 317
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=95.18 E-value=0.23 Score=53.28 Aligned_cols=130 Identities=20% Similarity=0.190 Sum_probs=79.7
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHH----HHhCCCCcEEEEEcCcchh
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF----HESAPSLDTICVYGGTPIS 212 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l----~~~~~~~~~~~~~g~~~~~ 212 (618)
+-.+..-|--.|||. ++.|++..+++. -.+-++.++++-+..++-+++++ ++|++.-.+....++.-..
T Consensus 203 kaTVFLVPRRHGKTW-f~VpiIsllL~s------~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI~~ 275 (668)
T PHA03372 203 KATVFLVPRRHGKTW-FIIPIISFLLKN------IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVISI 275 (668)
T ss_pred cceEEEecccCCcee-hHHHHHHHHHHh------hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEEEE
Confidence 446778899999994 667777777662 23678999999998888777665 4566643332221111000
Q ss_pred hhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCC-CCCcEEEEEecC
Q 007106 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSMMFSATM 286 (618)
Q Consensus 213 ~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~-~~~~~l~lSAT~ 286 (618)
.. . ..+..++++| ....+...=++++++++||||-+ -...+..++-.+. +++++|+.|.|-
T Consensus 276 s~-p--g~Kst~~fas------c~n~NsiRGQ~fnll~VDEA~FI----~~~a~~tilgfm~q~~~KiIfISS~N 337 (668)
T PHA03372 276 DH-R--GAKSTALFAS------CYNTNSIRGQNFHLLLVDEAHFI----KKDAFNTILGFLAQNTTKIIFISSTN 337 (668)
T ss_pred ec-C--CCcceeeehh------hccCccccCCCCCEEEEehhhcc----CHHHHHHhhhhhcccCceEEEEeCCC
Confidence 00 0 0112233333 22333444567999999999965 3455566666654 578899998883
No 318
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.17 E-value=0.23 Score=52.43 Aligned_cols=102 Identities=16% Similarity=0.239 Sum_probs=79.8
Q ss_pred EEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh
Q 007106 140 IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219 (618)
Q Consensus 140 ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~ 219 (618)
|-+--+.+||+..-++++.+.+.. +-.|.+||.+-+.+-|.|+++++. .++++++.++|+..+..++.+.+.
T Consensus 361 V~QelvF~gse~~K~lA~rq~v~~-------g~~PP~lIfVQs~eRak~L~~~L~-~~~~i~v~vIh~e~~~~qrde~~~ 432 (593)
T KOG0344|consen 361 VDQELVFCGSEKGKLLALRQLVAS-------GFKPPVLIFVQSKERAKQLFEELE-IYDNINVDVIHGERSQKQRDETME 432 (593)
T ss_pred hhhhheeeecchhHHHHHHHHHhc-------cCCCCeEEEEecHHHHHHHHHHhh-hccCcceeeEecccchhHHHHHHH
Confidence 334456899998888888777654 346789999999999999999997 678899999999877666554443
Q ss_pred ----cCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhh
Q 007106 220 ----YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (618)
Q Consensus 220 ----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH 255 (618)
....|+||| +++.+. +++..+.+||.+..-
T Consensus 433 ~FR~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 433 RFRIGKIWVLICT-----DLLARG-IDFKGVNLVINYDFP 466 (593)
T ss_pred HHhccCeeEEEeh-----hhhhcc-ccccCcceEEecCCC
Confidence 248999999 666554 789999999986554
No 319
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.15 E-value=0.094 Score=57.27 Aligned_cols=39 Identities=13% Similarity=0.196 Sum_probs=24.3
Q ss_pred CCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEE
Q 007106 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
...+++||||+|+|... ....+.++++..+....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~-A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTH-SFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhcCCCCcEEEEEE
Confidence 46789999999987543 2334555555555555555544
No 320
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.15 E-value=0.075 Score=58.37 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=25.6
Q ss_pred CCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEE
Q 007106 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
+...++|||||+|+|... -...+.+.++..+..+.+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~-a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTA-AFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHH-HHHHHHHHHHhCCCCeEEEEEe
Confidence 457899999999987533 2333444455555566666655
No 321
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.14 E-value=0.15 Score=51.43 Aligned_cols=42 Identities=14% Similarity=0.118 Sum_probs=25.9
Q ss_pred CCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEec
Q 007106 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT 285 (618)
....+++|||+||+|... -...+.+.++.-+++..+|++|..
T Consensus 105 ~g~~KV~iI~~a~~m~~~-AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEA-AANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred cCCceEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEEECC
Confidence 346789999999998543 334444555554455555555544
No 322
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.13 E-value=0.26 Score=48.55 Aligned_cols=28 Identities=29% Similarity=0.188 Sum_probs=22.1
Q ss_pred HHHHHHHhCCCCEEEEccCCChhHHHHH
Q 007106 127 KAVLEPAMQGRDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 127 ~~~i~~i~~~~~~ll~~~tGsGKT~~~l 154 (618)
++++..+..+.++++.+++|+|||..+.
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 3445566678899999999999998654
No 323
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.13 E-value=0.56 Score=48.04 Aligned_cols=119 Identities=14% Similarity=0.182 Sum_probs=59.2
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEc-C-cHH-HHHHHHHHHHHhCCCCcEEEEEcCcchhh
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA-P-TRE-LAKQVEKEFHESAPSLDTICVYGGTPISH 213 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~-P-t~~-La~q~~~~l~~~~~~~~~~~~~g~~~~~~ 213 (618)
+.+++.+|+|+|||.++.-.+.. +.. .+.++.+++ - .+. -+.||....... ++.+
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~-l~~--------~g~~V~lItaDtyR~gAveQLk~yae~l--gvpv----------- 264 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQ-LLK--------QNRTVGFITTDTFRSGAVEQFQGYADKL--DVEL----------- 264 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHH--------cCCeEEEEeCCccCccHHHHHHHHhhcC--CCCE-----------
Confidence 45789999999999765443332 211 133444443 2 222 233443333221 1111
Q ss_pred hhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccC-CcHHHHHHHHHhCCCCCcEEEEEecCCh
Q 007106 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPP 288 (618)
Q Consensus 214 ~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~-~~~~~~~~il~~l~~~~~~l~lSAT~~~ 288 (618)
.++.+|..+.+.+.... ...++++|+||=+=+.... .....+..+...+.+..-++++|||...
T Consensus 265 ----------~~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~ 329 (407)
T PRK12726 265 ----------IVATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKS 329 (407)
T ss_pred ----------EecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccH
Confidence 12245666655554321 1246789999988654211 1223333444444444445677876554
No 324
>PRK06904 replicative DNA helicase; Validated
Probab=95.12 E-value=0.27 Score=52.67 Aligned_cols=115 Identities=16% Similarity=0.088 Sum_probs=59.4
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcC--cchh
Q 007106 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGG--TPIS 212 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~--~~~~ 212 (618)
.+.-+||.|.+|.|||..++-.+...+.+ .+..++|++. .--..|+..++......+....+..+ .+..
T Consensus 220 ~G~LiiIaarPg~GKTafalnia~~~a~~--------~g~~Vl~fSl-EMs~~ql~~Rlla~~s~v~~~~i~~g~~l~~~ 290 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTFAMNLCENAAMA--------SEKPVLVFSL-EMPAEQIMMRMLASLSRVDQTKIRTGQNLDQQ 290 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHh--------cCCeEEEEec-cCCHHHHHHHHHHhhCCCCHHHhccCCCCCHH
Confidence 33447889999999997554333333222 1345666654 45556666666544333332222222 2222
Q ss_pred hh------hHHhhcCCCEEE-----EChHHHHHHHHhcCCCCCCccEEEEchhhhhc
Q 007106 213 HQ------MRALDYGVDAVV-----GTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 213 ~~------~~~l~~~~~Ilv-----~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~ 258 (618)
++ ...+....++.| .|+..+...+..-......+++||||=.|.+.
T Consensus 291 e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 347 (472)
T PRK06904 291 DWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMR 347 (472)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcC
Confidence 21 112222344555 35566654443321112358899999998775
No 325
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.06 E-value=0.093 Score=59.16 Aligned_cols=96 Identities=19% Similarity=0.229 Sum_probs=73.4
Q ss_pred cCcchhHHH-HHHHHHhccCCeEEEEecchhHHHHHHHHHHc-----cCCccccccCCCHHHHHHHHHHHhcCCccEEEE
Q 007106 326 SMYEKPSII-GQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399 (618)
Q Consensus 326 ~~~~k~~~l-~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVa 399 (618)
.-.-|.... ..++.....+.+++|.+||+.-+...++.+.+ .+.+..+||+++..+|++++..+.+|+.+|+|+
T Consensus 291 TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVg 370 (681)
T PRK10917 291 VGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIG 370 (681)
T ss_pred CCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEc
Confidence 334454433 33344445677999999999999988887754 267889999999999999999999999999999
Q ss_pred ccc-cccCCCCCCccEEEEcCCC
Q 007106 400 TDV-AARGLDVPNVDLIIHYELP 421 (618)
Q Consensus 400 T~~-~~~Gidi~~~~~VI~~~~p 421 (618)
|.. +...+.+.++.+||.-...
T Consensus 371 T~~ll~~~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 371 THALIQDDVEFHNLGLVIIDEQH 393 (681)
T ss_pred hHHHhcccchhcccceEEEechh
Confidence 975 4455778888888864443
No 326
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.06 E-value=0.16 Score=53.38 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=17.3
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHH
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i 161 (618)
.+++|.+++|+|||.+. ..++..+
T Consensus 56 ~~~lI~G~~GtGKT~l~-~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV-KKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHH
Confidence 46999999999999754 3333333
No 327
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.04 E-value=0.072 Score=54.98 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=30.9
Q ss_pred CccEEEEchhhhhccC-CcHHHHHHHHHhCCC-CCcEEEEEecCChHHH
Q 007106 245 EVQFVVLDEADQMLSV-GFAEDVEVILERLPQ-NRQSMMFSATMPPWIR 291 (618)
Q Consensus 245 ~~~~vViDEaH~~~~~-~~~~~~~~il~~l~~-~~~~l~lSAT~~~~~~ 291 (618)
++++++||.++.+... .....+-.++..+.. ..|+|+.|-.+|..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 7889999999987654 234445555555544 3477777777776544
No 328
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.039 Score=53.89 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=18.7
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHH
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIK 163 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~ 163 (618)
..|+|+.+|||||||+.+. .|+.+++
T Consensus 97 KSNILLiGPTGsGKTlLAq--TLAk~Ln 122 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQ--TLAKILN 122 (408)
T ss_pred eccEEEECCCCCcHHHHHH--HHHHHhC
Confidence 3579999999999998543 3444433
No 329
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.01 E-value=0.083 Score=58.15 Aligned_cols=40 Identities=13% Similarity=0.195 Sum_probs=25.1
Q ss_pred CCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEE
Q 007106 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
+...++|||||+|+|... ....+.+.++..+..+.+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~~-A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKS-AFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHH-HHHHHHHHHHhCCCCcEEEEEe
Confidence 346789999999986432 2233455555555566666555
No 330
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.99 E-value=0.075 Score=57.08 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=16.2
Q ss_pred CCEEEEccCCChhHHHHHHH
Q 007106 137 RDMIGRARTGTGKTLAFGIP 156 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~ 156 (618)
+.+|+.+|.|+|||.++.+.
T Consensus 44 ~a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARII 63 (507)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 35899999999999876433
No 331
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.97 E-value=0.3 Score=50.44 Aligned_cols=90 Identities=14% Similarity=0.174 Sum_probs=50.5
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhh
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~ 215 (618)
+.-+++.+++|+|||..++..+.... + .+.+++|+.-. +...|+.....++........+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a-~--------~g~~VlYvs~E-Es~~qi~~Ra~rlg~~~~~l~l~~-------- 143 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLA-K--------RGGKVLYVSGE-ESPEQIKLRADRLGISTENLYLLA-------- 143 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH-h--------cCCeEEEEECC-cCHHHHHHHHHHcCCCcccEEEEc--------
Confidence 34589999999999975544433322 2 14578887653 445666655554421111111110
Q ss_pred HHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhc
Q 007106 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 216 ~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~ 258 (618)
-.+.+.+.+.+.. .+.++||||+++.+.
T Consensus 144 ----------e~~le~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 144 ----------ETNLEDILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred ----------cCcHHHHHHHHHh-----cCCcEEEEcchHHhh
Confidence 0123444444432 357899999999875
No 332
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.22 Score=53.54 Aligned_cols=57 Identities=11% Similarity=0.079 Sum_probs=36.5
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHc---CCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007106 94 SKDEGLDISKLDISQDIVAALARR---GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 94 ~~~~~~~~~~~~l~~~l~~~l~~~---~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~ 153 (618)
...+..+|++++=-+++.+.|+.. ...++-.+.+-. +..-+.+|+.+|+|||||+++
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G---i~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG---ISPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc---CCCCceEEEECCCCcchHHHH
Confidence 445777899988777777777532 222232233222 122356999999999999865
No 333
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.4 Score=49.47 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=19.4
Q ss_pred CCccEEEEchhhhhccCCcHHHHHHHHHhC
Q 007106 244 SEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l 273 (618)
...-+||+||++.+.+... ..+..+++..
T Consensus 122 ~~~~IvvLDEid~L~~~~~-~~LY~L~r~~ 150 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG-EVLYSLLRAP 150 (366)
T ss_pred CCeEEEEEcchhhhccccc-hHHHHHHhhc
Confidence 3455899999999987643 4555555444
No 334
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.94 E-value=0.085 Score=51.28 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=19.7
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHH
Q 007106 139 MIGRARTGTGKTLAFGIPILDKIIK 163 (618)
Q Consensus 139 ~ll~~~tGsGKT~~~l~~~l~~i~~ 163 (618)
+||.+|||||||.+ +.+|+.++.+
T Consensus 128 ILVTGpTGSGKSTT-lAamId~iN~ 151 (353)
T COG2805 128 ILVTGPTGSGKSTT-LAAMIDYINK 151 (353)
T ss_pred EEEeCCCCCcHHHH-HHHHHHHHhc
Confidence 89999999999965 5777777755
No 335
>PHA00729 NTP-binding motif containing protein
Probab=94.94 E-value=0.31 Score=46.18 Aligned_cols=75 Identities=12% Similarity=0.133 Sum_probs=36.8
Q ss_pred CCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccC-CcH----HHHHHHHHhCCCCCcEEEEEecCChHHHHHHHH
Q 007106 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFA----EDVEVILERLPQNRQSMMFSATMPPWIRSLTNK 296 (618)
Q Consensus 222 ~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~-~~~----~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~ 296 (618)
...++.+.+.|+..+....-.....+++||||+=.-+.. .+. .....+...+...++++.+...-+..+...+..
T Consensus 59 ~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 59 QNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred CcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 356666777676666442222234678999993211110 011 111223333444566666666655555544443
No 336
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.93 E-value=0.12 Score=52.64 Aligned_cols=34 Identities=18% Similarity=0.143 Sum_probs=24.8
Q ss_pred ChHHHHHHHHHHhCC-----CCEEEEccCCChhHHHHHH
Q 007106 122 LFPIQKAVLEPAMQG-----RDMIGRARTGTGKTLAFGI 155 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~-----~~~ll~~~tGsGKT~~~l~ 155 (618)
++|||...+..+..- +-+|+.+|.|.||+..+..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~ 40 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQH 40 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHH
Confidence 357777777766542 2478999999999986643
No 337
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=94.88 E-value=0.31 Score=56.12 Aligned_cols=140 Identities=13% Similarity=0.117 Sum_probs=101.2
Q ss_pred HHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHH--H----------------------HhhhcCCCCCCeEEEEc
Q 007106 125 IQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII--K----------------------FNEKHGRGRNPLCLVLA 180 (618)
Q Consensus 125 ~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~--~----------------------~~~~~~~~~~~~~lil~ 180 (618)
-|++-+..+..+-|+|--..|=-=.|+-.-+.-+..+. . ..-...-.++.++.+|+
T Consensus 731 k~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~ 810 (1139)
T COG1197 731 KHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVH 810 (1139)
T ss_pred cHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEEEe
Confidence 48888888888888887777777777654333221110 0 00000123488999999
Q ss_pred CcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHH----hhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhh
Q 007106 181 PTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA----LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (618)
Q Consensus 181 Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~----l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~ 256 (618)
|..+-..+..+.++++.|..++.+.||.....+-.+. ....+||+||| -+-+..+++.+...+||+-||+
T Consensus 811 NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~T------TIIEtGIDIPnANTiIIe~AD~ 884 (1139)
T COG1197 811 NRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCT------TIIETGIDIPNANTIIIERADK 884 (1139)
T ss_pred cchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEe------eeeecCcCCCCCceEEEecccc
Confidence 9999999999999999999999999999886654333 33569999999 4455567899999999999998
Q ss_pred hccCCcHHHHHHHHHhCC
Q 007106 257 MLSVGFAEDVEVILERLP 274 (618)
Q Consensus 257 ~~~~~~~~~~~~il~~l~ 274 (618)
+ -..++..+--+..
T Consensus 885 f----GLsQLyQLRGRVG 898 (1139)
T COG1197 885 F----GLAQLYQLRGRVG 898 (1139)
T ss_pred c----cHHHHHHhccccC
Confidence 6 3455666655553
No 338
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.045 Score=55.11 Aligned_cols=48 Identities=17% Similarity=0.128 Sum_probs=28.1
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCC--hHHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007106 99 LDISKLDISQDIVAALARRGISKL--FPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l--~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~ 153 (618)
.++...-|++.|.+.+...-+..- ..+|. --+|+++.+|+|+|||+++
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTaNTK~h~a-------pfRNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATANTKKHQA-------PFRNILFYGPPGTGKTMFA 401 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhcccccccc-------hhhheeeeCCCCCCchHHH
Confidence 346666777777766643211100 00000 0158999999999999754
No 339
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.81 E-value=0.074 Score=55.14 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=22.6
Q ss_pred CCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEE
Q 007106 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
.+.+++||||+|.+.... ...+.+.++..+....+|+.|
T Consensus 118 ~~~kviIIDEa~~l~~~a-~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHS-FNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHH-HHHHHHHHhcCCCCeEEEEEc
Confidence 467899999999875321 122344444444455555544
No 340
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.74 E-value=0.19 Score=48.51 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=32.7
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
+.-+++.+++|+|||..++..+...+.+ +.+++++.-- +-..++.+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~---------g~~~~y~~~e-~~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ---------GKKVYVITTE-NTSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC---------CCEEEEEEcC-CCHHHHHHHHHHC
Confidence 3458999999999998665555444322 5567777653 4445666666554
No 341
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.71 E-value=0.27 Score=47.33 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=30.9
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007106 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
.+..+++.+++|+|||..++..+...+.+ +..++++.- .+.+.++.+....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~---------g~~~~~is~-e~~~~~i~~~~~~ 69 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD---------GDPVIYVTT-EESRESIIRQAAQ 69 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc---------CCeEEEEEc-cCCHHHHHHHHHH
Confidence 34668999999999997665444433321 445666664 3444555544433
No 342
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.70 E-value=0.12 Score=48.18 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=24.6
Q ss_pred CCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEE
Q 007106 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
-+.+.||+||||.|.+- -...+++.++...+.+++.+..
T Consensus 112 grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFalaC 150 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFALAC 150 (333)
T ss_pred CceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhhhh
Confidence 46789999999988653 3445555555555555544433
No 343
>CHL00181 cbbX CbbX; Provisional
Probab=94.69 E-value=0.47 Score=47.31 Aligned_cols=20 Identities=35% Similarity=0.230 Sum_probs=16.3
Q ss_pred CCCEEEEccCCChhHHHHHH
Q 007106 136 GRDMIGRARTGTGKTLAFGI 155 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~ 155 (618)
+.++++.+|+|+|||.++-.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 34689999999999986643
No 344
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.68 E-value=0.6 Score=46.11 Aligned_cols=55 Identities=11% Similarity=0.212 Sum_probs=33.2
Q ss_pred CCccEEEEchhhhhccC-CcHHHHHHHHHhCC------CCCcEEEEEecCChHHHHHHHHhc
Q 007106 244 SEVQFVVLDEADQMLSV-GFAEDVEVILERLP------QNRQSMMFSATMPPWIRSLTNKYL 298 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~-~~~~~~~~il~~l~------~~~~~l~lSAT~~~~~~~~~~~~l 298 (618)
.++++||||=+-++... .....+..+.+..+ ++-.+++++||...........+.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFN 214 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHH
Confidence 56888999988765321 12334555555444 455688999997655444444444
No 345
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.68 E-value=0.17 Score=56.29 Aligned_cols=92 Identities=18% Similarity=0.256 Sum_probs=74.5
Q ss_pred cchhHHHHHHHHHh-ccCCeEEEEecchhHHHHHHHHHHccCC---ccccccCCCHHHHHHHHHHHhcCCccEEEEcccc
Q 007106 328 YEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAKSYN---CEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403 (618)
Q Consensus 328 ~~k~~~l~~ll~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~---~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~ 403 (618)
..|.+.+.+++.+. ..++++||.+|.+..+..+.+.|++.+. +..+|++++..+|.+......+|+.+|+|.|-.+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 46777777777665 4578999999999999999999987654 7889999999999999999999999999999643
Q ss_pred ccCCCCCCccEEEEcCC
Q 007106 404 ARGLDVPNVDLIIHYEL 420 (618)
Q Consensus 404 ~~Gidi~~~~~VI~~~~ 420 (618)
-. +-+++...||..+-
T Consensus 251 vF-aP~~~LgLIIvdEE 266 (665)
T PRK14873 251 VF-APVEDLGLVAIWDD 266 (665)
T ss_pred EE-eccCCCCEEEEEcC
Confidence 32 45567777776543
No 346
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.65 E-value=0.12 Score=53.30 Aligned_cols=43 Identities=23% Similarity=0.257 Sum_probs=27.0
Q ss_pred CCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecC
Q 007106 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~ 286 (618)
.....+|||||+|.|... -...+.+.++..+..+.+|++|..+
T Consensus 139 ~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 139 EGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred cCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECCc
Confidence 356789999999987432 3344555555555555566655554
No 347
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.16 Score=51.05 Aligned_cols=57 Identities=30% Similarity=0.372 Sum_probs=33.4
Q ss_pred CCCCccCCCCCHHHHHHHHHc----CCC-CCh---------HHHHHH--H----HHHhCC-----CCEEEEccCCChhHH
Q 007106 97 EGLDISKLDISQDIVAALARR----GIS-KLF---------PIQKAV--L----EPAMQG-----RDMIGRARTGTGKTL 151 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~----~~~-~l~---------~~Q~~~--i----~~i~~~-----~~~ll~~~tGsGKT~ 151 (618)
....|+.+.....|.+.|..- .+. +.. ..-++| + |...++ +.+|+.+|+|+|||+
T Consensus 181 ~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTl 260 (491)
T KOG0738|consen 181 EDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTL 260 (491)
T ss_pred ccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHH
Confidence 445577778888888887642 111 111 111222 1 333343 569999999999997
Q ss_pred HH
Q 007106 152 AF 153 (618)
Q Consensus 152 ~~ 153 (618)
.+
T Consensus 261 LA 262 (491)
T KOG0738|consen 261 LA 262 (491)
T ss_pred HH
Confidence 43
No 348
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.61 E-value=0.07 Score=52.53 Aligned_cols=140 Identities=16% Similarity=0.115 Sum_probs=70.3
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhh
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~ 215 (618)
+.-++|.|.+|.|||..++-.+...+.+ .+..+++++.- .-..++..++-.....+...-+..+.......
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~--------~~~~vly~SlE-m~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~ 89 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALN--------GGYPVLYFSLE-MSEEELAARLLARLSGVPYNKIRSGDLSDEEF 89 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHT--------TSSEEEEEESS-S-HHHHHHHHHHHHHTSTHHHHHCCGCHHHHH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHh--------cCCeEEEEcCC-CCHHHHHHHHHHHhhcchhhhhhccccCHHHH
Confidence 3458999999999997666555555433 13578888752 22233333332222122211111111111111
Q ss_pred H-------HhhcCCCEEE-E----ChHHHHHHHHhcCCCCCCccEEEEchhhhhccC----CcHHHHHHHHHhCC-----
Q 007106 216 R-------ALDYGVDAVV-G----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV----GFAEDVEVILERLP----- 274 (618)
Q Consensus 216 ~-------~l~~~~~Ilv-~----T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~----~~~~~~~~il~~l~----- 274 (618)
. .+.. ..+.| . |++.|...+..-......+++||||=.|.+... .....+..+...++
T Consensus 90 ~~~~~~~~~l~~-~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~ 168 (259)
T PF03796_consen 90 ERLQAAAEKLSD-LPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKE 168 (259)
T ss_dssp HHHHHHHHHHHT-SEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh-CcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1 1222 22332 2 455665555443222367899999999987653 23444555544442
Q ss_pred CCCcEEEEEec
Q 007106 275 QNRQSMMFSAT 285 (618)
Q Consensus 275 ~~~~~l~lSAT 285 (618)
.++.+|++|..
T Consensus 169 ~~i~vi~~sQl 179 (259)
T PF03796_consen 169 LNIPVIALSQL 179 (259)
T ss_dssp HTSEEEEEEEB
T ss_pred cCCeEEEcccc
Confidence 25566666654
No 349
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.60 E-value=0.1 Score=57.72 Aligned_cols=46 Identities=20% Similarity=0.340 Sum_probs=39.8
Q ss_pred CCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCCh
Q 007106 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~ 288 (618)
..+.-++|+|..|++.+......++.+++..|.+.+.++.|-+-|+
T Consensus 127 ~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 127 YEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred hcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 4445689999999999988889999999999999999999988653
No 350
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.58 E-value=0.088 Score=59.38 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=22.5
Q ss_pred CCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEE
Q 007106 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~l 282 (618)
..++++||||+|+|... ....+.++++.-+..+.+|+.
T Consensus 118 gk~KViIIDEAh~LT~e-AqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRS-SFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhccCCCeEEEEE
Confidence 46789999999987432 223334444444445555554
No 351
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.55 E-value=0.058 Score=58.89 Aligned_cols=20 Identities=25% Similarity=0.165 Sum_probs=16.0
Q ss_pred CCEEEEccCCChhHHHHHHH
Q 007106 137 RDMIGRARTGTGKTLAFGIP 156 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~ 156 (618)
+.+|+.+|.|+|||.++.+.
T Consensus 39 ha~Lf~GPpG~GKTtiAril 58 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIF 58 (624)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 35889999999999876543
No 352
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.54 E-value=0.54 Score=49.23 Aligned_cols=54 Identities=6% Similarity=0.204 Sum_probs=32.9
Q ss_pred CCccEEEEchhhhhccC-CcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHh
Q 007106 244 SEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY 297 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~-~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~ 297 (618)
..+++||||=+-++-.. ..-..+..+.....+..-+++++||........+..|
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F 235 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF 235 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH
Confidence 35788999988654321 1234444555555566668888998765555555444
No 353
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.53 E-value=0.2 Score=56.36 Aligned_cols=91 Identities=22% Similarity=0.235 Sum_probs=69.8
Q ss_pred chhHHHHHHHHH-hccCCeEEEEecchhHHHHHHHHHHcc--CCccccccCCCHHHHHHHHHHHhcCCccEEEEcccccc
Q 007106 329 EKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAKS--YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAAR 405 (618)
Q Consensus 329 ~k~~~l~~ll~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~ 405 (618)
.|......++.. ...+.++||.+|+++.+..+++.|.+. ..+..+|++++..+|.++...+.+++.+|+|+|...-
T Consensus 174 GKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal- 252 (679)
T PRK05580 174 GKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL- 252 (679)
T ss_pred hHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-
Confidence 344444433332 334679999999999999999999764 4678899999999999999999999999999997432
Q ss_pred CCCCCCccEEEEcCC
Q 007106 406 GLDVPNVDLIIHYEL 420 (618)
Q Consensus 406 Gidi~~~~~VI~~~~ 420 (618)
-+.+.++..||..+.
T Consensus 253 ~~p~~~l~liVvDEe 267 (679)
T PRK05580 253 FLPFKNLGLIIVDEE 267 (679)
T ss_pred cccccCCCEEEEECC
Confidence 255677888776554
No 354
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=94.50 E-value=0.2 Score=49.51 Aligned_cols=81 Identities=17% Similarity=0.325 Sum_probs=63.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchh-hhhHHhhcC-CCEEEEChHHHHHHHHhcCCCCCCccEEE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS-HQMRALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~-~~~~~l~~~-~~Ilv~T~~~l~~~l~~~~~~l~~~~~vV 250 (618)
+..++|.+|+.+..+|.++.+++.++...+..++..+... +....++++ .+|+|+| ..|++ .+.+.+++++|
T Consensus 305 ~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTT-----TILER-GVTfp~vdV~V 378 (441)
T COG4098 305 GRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVEAFRDGKITLLITT-----TILER-GVTFPNVDVFV 378 (441)
T ss_pred CCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCccHHHHHHHHHcCceEEEEEe-----ehhhc-ccccccceEEE
Confidence 5679999999999999999999988888877777665533 333444444 7899999 44444 56689999999
Q ss_pred Echhhhhcc
Q 007106 251 LDEADQMLS 259 (618)
Q Consensus 251 iDEaH~~~~ 259 (618)
++--|+++.
T Consensus 379 lgaeh~vfT 387 (441)
T COG4098 379 LGAEHRVFT 387 (441)
T ss_pred ecCCccccc
Confidence 999998754
No 355
>PRK07004 replicative DNA helicase; Provisional
Probab=94.49 E-value=0.19 Score=53.64 Aligned_cols=112 Identities=14% Similarity=0.041 Sum_probs=55.7
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEE-EcCcchhhhh
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISHQM 215 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~-~g~~~~~~~~ 215 (618)
.-++|.|.+|+|||..++-.+.....+ .+..++++.. ..-..|+..++-.....+....+ .+..+..++.
T Consensus 214 ~liviaarpg~GKT~~al~ia~~~a~~--------~~~~v~~fSl-EM~~~ql~~R~la~~~~v~~~~i~~g~l~~~e~~ 284 (460)
T PRK07004 214 ELIIVAGRPSMGKTAFSMNIGEYVAVE--------YGLPVAVFSM-EMPGTQLAMRMLGSVGRLDQHRMRTGRLTDEDWP 284 (460)
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHH--------cCCeEEEEeC-CCCHHHHHHHHHHhhcCCCHHHHhcCCCCHHHHH
Confidence 447899999999997655444333322 1345666643 34445555555332222222111 1222222221
Q ss_pred ------HHhhcCCCEEE-----EChHHHHHHHHhcCCCCCCccEEEEchhhhhc
Q 007106 216 ------RALDYGVDAVV-----GTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 216 ------~~l~~~~~Ilv-----~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~ 258 (618)
..+. ..++.| .|+..+.....+-......+++||||=.|.+.
T Consensus 285 ~~~~a~~~l~-~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 285 KLTHAVQKMS-EAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMS 337 (460)
T ss_pred HHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhcc
Confidence 1222 244555 35555544333321112357899999999775
No 356
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.44 E-value=0.15 Score=50.50 Aligned_cols=32 Identities=19% Similarity=0.078 Sum_probs=22.6
Q ss_pred ChHHHHHHHHHHh----CCC-CEEEEccCCChhHHHH
Q 007106 122 LFPIQKAVLEPAM----QGR-DMIGRARTGTGKTLAF 153 (618)
Q Consensus 122 l~~~Q~~~i~~i~----~~~-~~ll~~~tGsGKT~~~ 153 (618)
+++.+++++..+. .+. .+++.+++|+|||..+
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 5666666666543 223 4889999999999754
No 357
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.38 E-value=0.24 Score=51.47 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=17.9
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHH
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i 161 (618)
.+++|.+|+|+|||.++ ..++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 57999999999999754 4444444
No 358
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.37 E-value=0.23 Score=47.97 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=14.1
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
++|+.+|+|.|||..+
T Consensus 54 HvLl~GPPGlGKTTLA 69 (332)
T COG2255 54 HVLLFGPPGLGKTTLA 69 (332)
T ss_pred eEEeeCCCCCcHHHHH
Confidence 5999999999999744
No 359
>PRK08840 replicative DNA helicase; Provisional
Probab=94.37 E-value=0.49 Score=50.55 Aligned_cols=117 Identities=17% Similarity=0.098 Sum_probs=57.2
Q ss_pred HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEE-cCcch
Q 007106 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY-GGTPI 211 (618)
Q Consensus 133 i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~-g~~~~ 211 (618)
+..+.-++|.|.+|.|||..++-.+.....+ .+..++|+.. .--..|+..++-.....+...-+. +..+.
T Consensus 214 ~~~g~LiviaarPg~GKTafalnia~~~a~~--------~~~~v~~fSl-EMs~~ql~~Rlla~~s~v~~~~i~~~~l~~ 284 (464)
T PRK08840 214 LQGSDLIIVAARPSMGKTTFAMNLCENAAMD--------QDKPVLIFSL-EMPAEQLMMRMLASLSRVDQTKIRTGQLDD 284 (464)
T ss_pred CCCCceEEEEeCCCCchHHHHHHHHHHHHHh--------CCCeEEEEec-cCCHHHHHHHHHHhhCCCCHHHHhcCCCCH
Confidence 3344458899999999997654443333222 1345666644 344556666654433223221111 12222
Q ss_pred hhhh------HHhhcCCCEEEE-----ChHHHHHHHHhcCCCCCCccEEEEchhhhhc
Q 007106 212 SHQM------RALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 212 ~~~~------~~l~~~~~Ilv~-----T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~ 258 (618)
.++. ..+....++.|- |...+.....+-......+++||||=.|.+.
T Consensus 285 ~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 285 EDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 2221 122122344442 3445543333221112358899999999774
No 360
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.36 E-value=0.2 Score=52.14 Aligned_cols=42 Identities=17% Similarity=0.270 Sum_probs=24.8
Q ss_pred CCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEec
Q 007106 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT 285 (618)
....+++||||+|+|... ....+.+.++.-+++..+|+.|.+
T Consensus 115 ~~~~kViiIDead~m~~~-aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 115 TGRWRIVVIEDADRLTER-AANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred cCCcEEEEEechhhcCHH-HHHHHHHHhhcCCCCCeEEEEECC
Confidence 356789999999998543 223344455444444444444444
No 361
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.34 E-value=0.074 Score=51.13 Aligned_cols=130 Identities=12% Similarity=0.090 Sum_probs=66.7
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCc-------EEEEEcC
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD-------TICVYGG 208 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~-------~~~~~g~ 208 (618)
+..++|.+++|+|||+.++..+...+.+. +.++++++- .+-..++.+.+..+..++. ...+...
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~--------ge~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~ 89 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNF--------GEKVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKLKIIDAF 89 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHH--------T--EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhc--------CCcEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecc
Confidence 45689999999999987666565555331 335777764 4555777777775532211 1111111
Q ss_pred cchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCC----cHHHHHHHHHhCCCCCcEEEEEe
Q 007106 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG----FAEDVEVILERLPQNRQSMMFSA 284 (618)
Q Consensus 209 ~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~----~~~~~~~il~~l~~~~~~l~lSA 284 (618)
....... -..++.+...+....- -...+.||||-...+.... +...+..++..++....++++++
T Consensus 90 ~~~~~~~----------~~~~~~l~~~i~~~i~-~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~ 158 (226)
T PF06745_consen 90 PERIGWS----------PNDLEELLSKIREAIE-ELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTS 158 (226)
T ss_dssp GGGST-T----------SCCHHHHHHHHHHHHH-HHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred ccccccc----------ccCHHHHHHHHHHHHH-hcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 1100000 1233444433332111 1123789999999872221 33455556666654445566666
Q ss_pred c
Q 007106 285 T 285 (618)
Q Consensus 285 T 285 (618)
+
T Consensus 159 ~ 159 (226)
T PF06745_consen 159 E 159 (226)
T ss_dssp E
T ss_pred c
Confidence 6
No 362
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.34 E-value=0.57 Score=48.70 Aligned_cols=53 Identities=9% Similarity=0.123 Sum_probs=29.7
Q ss_pred CCccEEEEchhhhhc-cCCcHHHHHHHHHhCC---CCCcEEEEEecCChH-HHHHHHH
Q 007106 244 SEVQFVVLDEADQML-SVGFAEDVEVILERLP---QNRQSMMFSATMPPW-IRSLTNK 296 (618)
Q Consensus 244 ~~~~~vViDEaH~~~-~~~~~~~~~~il~~l~---~~~~~l~lSAT~~~~-~~~~~~~ 296 (618)
.+.++||||=+-+.. +......+..++.... +...+++++||.... +......
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~ 355 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKA 355 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 467889999766532 1112334444444432 234578899998773 3443333
No 363
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.34 E-value=0.17 Score=53.53 Aligned_cols=72 Identities=13% Similarity=0.272 Sum_probs=59.7
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCc
Q 007106 171 GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEV 246 (618)
Q Consensus 171 ~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~ 246 (618)
....++||.|-|+.-|.++...++... +.+.++||..+..++...|+ ..+.||||| .+....+++.++
T Consensus 339 ~~~~KvIIFc~tkr~~~~l~~~l~~~~--~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVAT------dVAaRGLDi~dV 410 (519)
T KOG0331|consen 339 DSEGKVIIFCETKRTCDELARNLRRKG--WPAVAIHGDKSQSERDWVLKGFREGKSPVLVAT------DVAARGLDVPDV 410 (519)
T ss_pred cCCCcEEEEecchhhHHHHHHHHHhcC--cceeeecccccHHHHHHHHHhcccCCcceEEEc------ccccccCCCccc
Confidence 346789999999999999999998753 67899999999887766655 248999999 566667889999
Q ss_pred cEEE
Q 007106 247 QFVV 250 (618)
Q Consensus 247 ~~vV 250 (618)
++||
T Consensus 411 ~lVI 414 (519)
T KOG0331|consen 411 DLVI 414 (519)
T ss_pred cEEE
Confidence 9999
No 364
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=1.4 Score=42.96 Aligned_cols=142 Identities=15% Similarity=0.216 Sum_probs=76.8
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCC-----CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCC
Q 007106 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGR-----DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGR 170 (618)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~-----~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~ 170 (618)
.+...|++..=-+...++|+..=+.... +|.+..++ .+|+.+|+|+||+..+-..+-.
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVILPIK------FPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE----------- 189 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAVILPIK------FPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE----------- 189 (439)
T ss_pred CCCCchhhhccchhHHHHHHhheeeccc------chhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh-----------
Confidence 3444555554334444555443221111 24555553 4899999999999743211111
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEE
Q 007106 171 GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 171 ~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vV 250 (618)
...+.+-+.+..|+..|.-+-.++.. .|..+.+. +.-++|.
T Consensus 190 --AnSTFFSvSSSDLvSKWmGESEkLVk--------------------------------nLFemARe-----~kPSIIF 230 (439)
T KOG0739|consen 190 --ANSTFFSVSSSDLVSKWMGESEKLVK--------------------------------NLFEMARE-----NKPSIIF 230 (439)
T ss_pred --cCCceEEeehHHHHHHHhccHHHHHH--------------------------------HHHHHHHh-----cCCcEEE
Confidence 11467777888888888655444310 11122222 2456799
Q ss_pred EchhhhhccCC---cHHHHHH----HHHhCC----CCCcEEEEEecCChHHHHH
Q 007106 251 LDEADQMLSVG---FAEDVEV----ILERLP----QNRQSMMFSATMPPWIRSL 293 (618)
Q Consensus 251 iDEaH~~~~~~---~~~~~~~----il~~l~----~~~~~l~lSAT~~~~~~~~ 293 (618)
|||+|.+.... -....++ ++..+. .+--++++.||-.+++..-
T Consensus 231 iDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDs 284 (439)
T KOG0739|consen 231 IDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDS 284 (439)
T ss_pred eehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHH
Confidence 99999775431 1122222 233332 3456899999988776543
No 365
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.30 E-value=0.15 Score=57.02 Aligned_cols=95 Identities=14% Similarity=0.226 Sum_probs=72.8
Q ss_pred CcchhHH-HHHHHHHhccCCeEEEEecchhHHHHHHHHHHc-----cCCccccccCCCHHHHHHHHHHHhcCCccEEEEc
Q 007106 327 MYEKPSI-IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400 (618)
Q Consensus 327 ~~~k~~~-l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT 400 (618)
..-|... +..++.....+.+++|.+|++.-++.+++.+.+ .+.+..+||+++..+|..+++.+.+|+.+|+|+|
T Consensus 266 GSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT 345 (630)
T TIGR00643 266 GSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGT 345 (630)
T ss_pred CCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEec
Confidence 3444443 233444455677999999999999988887754 3678899999999999999999999999999999
Q ss_pred ccc-ccCCCCCCccEEEEcCCC
Q 007106 401 DVA-ARGLDVPNVDLIIHYELP 421 (618)
Q Consensus 401 ~~~-~~Gidi~~~~~VI~~~~p 421 (618)
..+ ...+++.++.+||+-...
T Consensus 346 ~~ll~~~~~~~~l~lvVIDEaH 367 (630)
T TIGR00643 346 HALIQEKVEFKRLALVIIDEQH 367 (630)
T ss_pred HHHHhccccccccceEEEechh
Confidence 754 445777888888864443
No 366
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=94.28 E-value=0.063 Score=58.27 Aligned_cols=163 Identities=16% Similarity=0.181 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHhCCCC----------EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHH
Q 007106 121 KLFPIQKAVLEPAMQGRD----------MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~----------~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 190 (618)
.+...|.+++-.+.+.+. .||-.-.|.||-.+..-.|++..++ -..++|++.-+..|-....
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLk--------GRKrAlW~SVSsDLKfDAE 335 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLK--------GRKRALWFSVSSDLKFDAE 335 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhc--------ccceeEEEEeccccccchh
Q ss_pred HHHHHhCCCCcEEEEEcCcchhhhhHHhhcCCC--EEEEChHHHH---------------HHHHhcCCCCCCccEEEEch
Q 007106 191 KEFHESAPSLDTICVYGGTPISHQMRALDYGVD--AVVGTPGRVI---------------DLIKRNALNLSEVQFVVLDE 253 (618)
Q Consensus 191 ~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--Ilv~T~~~l~---------------~~l~~~~~~l~~~~~vViDE 253 (618)
+.|......--.+.......+..-.......+. |+++|+..|. .+++.-.-.+.-+ ||+||
T Consensus 336 RDL~DigA~~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGv--IvfDE 413 (1300)
T KOG1513|consen 336 RDLRDIGATGIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGV--IVFDE 413 (1300)
T ss_pred hchhhcCCCCccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhcccee--EEehh
Q ss_pred hhhhccCC---------cHHHHHHHHHhCCCCCcEEEEEecCChHHHHHH
Q 007106 254 ADQMLSVG---------FAEDVEVILERLPQNRQSMMFSATMPPWIRSLT 294 (618)
Q Consensus 254 aH~~~~~~---------~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~ 294 (618)
||+..+.- .+..+..+-..+ ++.+++.-|||--.+.++++
T Consensus 414 CHkAKNL~p~~~~k~TKtG~tVLdLQk~L-P~ARVVYASATGAsEPrNMa 462 (1300)
T KOG1513|consen 414 CHKAKNLVPTAGAKSTKTGKTVLDLQKKL-PNARVVYASATGASEPRNMA 462 (1300)
T ss_pred hhhhcccccccCCCcCcccHhHHHHHHhC-CCceEEEeeccCCCCcchhh
No 367
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.28 E-value=0.24 Score=56.54 Aligned_cols=55 Identities=16% Similarity=0.122 Sum_probs=29.3
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHH--HhCCCCEEEEccCCChhHHHH
Q 007106 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEP--AMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~--i~~~~~~ll~~~tGsGKT~~~ 153 (618)
+...|+++.-.+.+.+.|...-.. +..++ +.+.. +...+.+|+.+|+|+|||+.+
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~-~~~~~-~~~~~~g~~~~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEW-PLKHP-EIFEKMGIRPPKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHh-hhhCH-HHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 345566666666666666442111 00111 11111 122346999999999999754
No 368
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=0.66 Score=46.46 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=15.1
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
+.+|+.+|+|+|||+.+
T Consensus 186 KGVLLYGPPGTGKTLLA 202 (406)
T COG1222 186 KGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CceEeeCCCCCcHHHHH
Confidence 67999999999999854
No 369
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.28 E-value=0.35 Score=53.38 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=22.7
Q ss_pred CCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEE
Q 007106 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~l 282 (618)
..++++||||+|+|... -...+.+.++.-+..+.+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~-a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHH-HHHHHHHHHHcCCCCeEEEEe
Confidence 46889999999987543 223334444444444445544
No 370
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.27 E-value=0.21 Score=54.00 Aligned_cols=92 Identities=22% Similarity=0.243 Sum_probs=70.4
Q ss_pred cchhHHHHHHHHH-hccCCeEEEEecchhHHHHHHHHHHcc--CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccc
Q 007106 328 YEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAKS--YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404 (618)
Q Consensus 328 ~~k~~~l~~ll~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~ 404 (618)
.-|......++.. ...+.++||.+|++.-+..+++.|.+. ..+..+|+.++..+|.++.....+|+.+|+|+|..+-
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal 87 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL 87 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH
Confidence 3455555444433 345779999999999999999999765 4578899999999999999999999999999996533
Q ss_pred cCCCCCCccEEEEcCC
Q 007106 405 RGLDVPNVDLIIHYEL 420 (618)
Q Consensus 405 ~Gidi~~~~~VI~~~~ 420 (618)
. +.++++..||..+.
T Consensus 88 f-~p~~~l~lIIVDEe 102 (505)
T TIGR00595 88 F-LPFKNLGLIIVDEE 102 (505)
T ss_pred c-CcccCCCEEEEECC
Confidence 2 45677887776543
No 371
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.22 E-value=0.19 Score=50.64 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=27.5
Q ss_pred CCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecC
Q 007106 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~ 286 (618)
....+++|||+||+|... -...+.+.++.-+++..+|++|..+
T Consensus 106 ~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~~ 148 (319)
T PRK06090 106 LNGYRLFVIEPADAMNES-ASNALLKTLEEPAPNCLFLLVTHNQ 148 (319)
T ss_pred cCCceEEEecchhhhCHH-HHHHHHHHhcCCCCCeEEEEEECCh
Confidence 456899999999998532 3444555555545555566665554
No 372
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.21 E-value=0.18 Score=55.24 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=24.9
Q ss_pred CCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEE
Q 007106 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
..+.+++||||+|+|... -...+.+.++..+..+.+|+.|
T Consensus 116 ~~~~KVvIIDEah~Lt~~-A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA-GFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 357889999999987543 2333444555544555555555
No 373
>PHA00350 putative assembly protein
Probab=94.20 E-value=0.33 Score=50.12 Aligned_cols=17 Identities=18% Similarity=0.083 Sum_probs=14.8
Q ss_pred EEEEccCCChhHHHHHH
Q 007106 139 MIGRARTGTGKTLAFGI 155 (618)
Q Consensus 139 ~ll~~~tGsGKT~~~l~ 155 (618)
.++.+..|||||+.++.
T Consensus 4 ~l~tG~pGSGKT~~aV~ 20 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVV 20 (399)
T ss_pred EEEecCCCCchhHHHHH
Confidence 57899999999987765
No 374
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.19 E-value=0.39 Score=48.74 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=27.7
Q ss_pred CCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEec
Q 007106 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT 285 (618)
....+++|+|++|.|... ....+.+.++..+....+|++|-.
T Consensus 111 ~~~~kV~iiEp~~~Ld~~-a~naLLk~LEep~~~~~~Ilvth~ 152 (325)
T PRK08699 111 RGGLRVILIHPAESMNLQ-AANSLLKVLEEPPPQVVFLLVSHA 152 (325)
T ss_pred cCCceEEEEechhhCCHH-HHHHHHHHHHhCcCCCEEEEEeCC
Confidence 356889999999987443 455566667766655555554443
No 375
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.17 E-value=0.56 Score=49.04 Aligned_cols=57 Identities=14% Similarity=0.040 Sum_probs=33.5
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHc---CCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007106 94 SKDEGLDISKLDISQDIVAALARR---GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 94 ~~~~~~~~~~~~l~~~l~~~l~~~---~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~ 153 (618)
...+...|+++.-.+...+.+... .+..+.-++..- +...+.+++.+|+|+|||+.+
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G---l~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG---IDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC---CCCCceEEEECCCCCCHHHHH
Confidence 345667777776666666666432 122222222111 223467999999999999854
No 376
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.15 E-value=0.41 Score=49.25 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=30.5
Q ss_pred CCccEEEEchhhhhccCCcHHHHHHHHHhC-CCCCcEEEEEecCChHH
Q 007106 244 SEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMMFSATMPPWI 290 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l-~~~~~~l~lSAT~~~~~ 290 (618)
....+|++||.| +.|..-...+..++..+ ....-+|++|-++|.++
T Consensus 126 ~~~~lLcfDEF~-V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 126 KESRLLCFDEFQ-VTDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred hcCCEEEEeeee-ccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 456689999999 44444455566666554 34566777788877643
No 377
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.10 E-value=0.065 Score=54.53 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=18.3
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHH
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIK 163 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~ 163 (618)
.|+|+.+|||||||+.+. .|+.+++
T Consensus 227 SNvLllGPtGsGKTllaq--TLAr~ld 251 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQ--TLARVLD 251 (564)
T ss_pred ccEEEECCCCCchhHHHH--HHHHHhC
Confidence 469999999999998543 4445443
No 378
>PRK08506 replicative DNA helicase; Provisional
Probab=94.10 E-value=0.37 Score=51.73 Aligned_cols=111 Identities=16% Similarity=0.070 Sum_probs=57.3
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEE-EcCcchhhh-
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISHQ- 214 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~-~g~~~~~~~- 214 (618)
.-++|.|.||.|||..++-.+...+ + .+..++|++. ..-..|+..++......+....+ .+..+..++
T Consensus 193 ~LivIaarpg~GKT~fal~ia~~~~-~--------~g~~V~~fSl-EMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~ 262 (472)
T PRK08506 193 DLIIIAARPSMGKTTLCLNMALKAL-N--------QDKGVAFFSL-EMPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWE 262 (472)
T ss_pred ceEEEEcCCCCChHHHHHHHHHHHH-h--------cCCcEEEEeC-cCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHH
Confidence 4488999999999976655444432 2 1445666654 45556666665443222222111 122121111
Q ss_pred -----hHHhhcCCCEEE-----EChHHHHHHHHhcCCCCCCccEEEEchhhhhc
Q 007106 215 -----MRALDYGVDAVV-----GTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 215 -----~~~l~~~~~Ilv-----~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~ 258 (618)
...+.. .++.| .|+..+...+++-......+++||||=.+.+.
T Consensus 263 ~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 263 RLSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 111222 33444 25566654444321112358899999999765
No 379
>PRK04328 hypothetical protein; Provisional
Probab=94.08 E-value=0.18 Score=49.17 Aligned_cols=52 Identities=15% Similarity=0.140 Sum_probs=34.5
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
+..++|.+++|+|||..++..+...+.+ +.+++++. +.+-..++.+.+..+.
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~---------ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQM---------GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc---------CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 4568999999999998666555554432 55677776 4455556666665543
No 380
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=94.08 E-value=0.27 Score=51.44 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=14.9
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
+.+|+.+|+|+|||+.+
T Consensus 166 ~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CceEEECCCCCChHHHH
Confidence 56999999999999754
No 381
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.02 E-value=0.26 Score=51.04 Aligned_cols=73 Identities=16% Similarity=0.060 Sum_probs=49.6
Q ss_pred cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007106 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
..+..+-..|+++.-..-.+.. .|.+-.|||||.+.++-+. .+. ...+..+++|.+-|+.|+.++...+.++
T Consensus 158 skIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa-~lh------~knPd~~I~~Tfftk~L~s~~r~lv~~F 229 (660)
T COG3972 158 SKIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAA-ELH------SKNPDSRIAFTFFTKILASTMRTLVPEF 229 (660)
T ss_pred HHHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHH-HHh------cCCCCceEEEEeehHHHHHHHHHHHHHH
Confidence 3455577778776655555544 6788899999975433222 221 1234668999999999999988877765
Q ss_pred C
Q 007106 197 A 197 (618)
Q Consensus 197 ~ 197 (618)
+
T Consensus 230 ~ 230 (660)
T COG3972 230 F 230 (660)
T ss_pred H
Confidence 5
No 382
>PRK06620 hypothetical protein; Validated
Probab=94.00 E-value=0.14 Score=48.57 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=14.4
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
..+++.+|+|+|||..+
T Consensus 45 ~~l~l~Gp~G~GKThLl 61 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLT 61 (214)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999744
No 383
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.00 E-value=0.76 Score=41.94 Aligned_cols=54 Identities=11% Similarity=0.175 Sum_probs=29.1
Q ss_pred CCccEEEEchhhhhcc-CCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHh
Q 007106 244 SEVQFVVLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY 297 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~-~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~ 297 (618)
.+.++||+|....... ......+..+........-++.+.|+-..........+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 4677899999986421 11233333333333345556677776555444444444
No 384
>PRK05748 replicative DNA helicase; Provisional
Probab=93.97 E-value=0.44 Score=50.96 Aligned_cols=113 Identities=12% Similarity=0.042 Sum_probs=56.9
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEE-EcCcchhhh
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISHQ 214 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~-~g~~~~~~~ 214 (618)
+.-++|.|.||.|||..++-.+...+.+ .+..++++.. ..-..|+..++......+....+ .+.....++
T Consensus 203 G~livIaarpg~GKT~~al~ia~~~a~~--------~g~~v~~fSl-Ems~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~ 273 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFALNIAQNVATK--------TDKNVAIFSL-EMGAESLVMRMLCAEGNIDAQRLRTGQLTDDDW 273 (448)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHh--------CCCeEEEEeC-CCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHH
Confidence 3448999999999997655444333222 1345666543 45556666666433222322211 122222221
Q ss_pred h------HHhhcCCCEEEE-----ChHHHHHHHHhcCCCCCCccEEEEchhhhhc
Q 007106 215 M------RALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 215 ~------~~l~~~~~Ilv~-----T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~ 258 (618)
. ..+. ..++.|. |++.+...+.+-......+++||||=.|.+.
T Consensus 274 ~~~~~a~~~l~-~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 274 PKLTIAMGSLS-DAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 1 1122 2344442 4555654443321111268899999999774
No 385
>PRK08006 replicative DNA helicase; Provisional
Probab=93.97 E-value=0.71 Score=49.44 Aligned_cols=139 Identities=16% Similarity=0.093 Sum_probs=68.2
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEE-cCcchhhh
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY-GGTPISHQ 214 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~-g~~~~~~~ 214 (618)
+.-++|.|.+|.|||..++-.+.....+ .+..++|+.. .--..|+..++......+....+. +..+..++
T Consensus 224 G~LiiIaarPgmGKTafalnia~~~a~~--------~g~~V~~fSl-EM~~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~ 294 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFAMNLCENAAML--------QDKPVLIFSL-EMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDW 294 (471)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh--------cCCeEEEEec-cCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHH
Confidence 3447889999999997655444433322 1345666643 344456665555433333322222 22222222
Q ss_pred hH------HhhcCCCEEEE-----ChHHHHHHHHhcCCCCCCccEEEEchhhhhccC----CcHHHHHHHHHhCC-----
Q 007106 215 MR------ALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV----GFAEDVEVILERLP----- 274 (618)
Q Consensus 215 ~~------~l~~~~~Ilv~-----T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~----~~~~~~~~il~~l~----- 274 (618)
.+ .+....++.|- |+..+.....+-......+++||||=.|.+... .....+..+.+.++
T Consensus 295 ~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAke 374 (471)
T PRK08006 295 ARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKE 374 (471)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 11 12123344443 555554444332111235899999999976422 12333444444432
Q ss_pred CCCcEEEEE
Q 007106 275 QNRQSMMFS 283 (618)
Q Consensus 275 ~~~~~l~lS 283 (618)
-++.+|++|
T Consensus 375 l~ipVi~Ls 383 (471)
T PRK08006 375 LQVPVVALS 383 (471)
T ss_pred hCCeEEEEE
Confidence 245555555
No 386
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.94 E-value=0.47 Score=48.71 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=27.3
Q ss_pred CCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEec
Q 007106 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT 285 (618)
....++|||||+|.|... -...+.+.++..+.+..+|++|..
T Consensus 139 ~g~~rVviIDeAd~l~~~-aanaLLk~LEEpp~~~~fiLit~~ 180 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRN-AANAILKTLEEPPARALFILISHS 180 (351)
T ss_pred cCCceEEEEEchhhcCHH-HHHHHHHHHhcCCCCceEEEEECC
Confidence 346789999999987533 334456666665555666666543
No 387
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=0.16 Score=53.07 Aligned_cols=57 Identities=14% Similarity=0.196 Sum_probs=33.5
Q ss_pred CCCCCCCccCCC---CCHHHHHHHHHcC---CCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007106 94 SKDEGLDISKLD---ISQDIVAALARRG---ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 94 ~~~~~~~~~~~~---l~~~l~~~l~~~~---~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~ 153 (618)
...+..+|++++ +..+.-+.+.+.- .+.|--+-+--++ .-+.+|+.+|+|+|||+.+
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~---HVKGiLLyGPPGTGKTLiA 273 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIK---HVKGILLYGPPGTGKTLIA 273 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCcc---ceeeEEEECCCCCChhHHH
Confidence 345677788874 6777766665431 2222212211111 1245999999999999854
No 388
>PRK08760 replicative DNA helicase; Provisional
Probab=93.89 E-value=0.32 Score=52.22 Aligned_cols=111 Identities=17% Similarity=0.099 Sum_probs=57.6
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEE-cCcchhhh-
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY-GGTPISHQ- 214 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~-g~~~~~~~- 214 (618)
.-++|.|.+|.|||..++-.+.....+ .+..++|++. ..-..|+..++......+....+. +..+..++
T Consensus 230 ~LivIaarPg~GKTafal~iA~~~a~~--------~g~~V~~fSl-EMs~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~ 300 (476)
T PRK08760 230 DLIILAARPAMGKTTFALNIAEYAAIK--------SKKGVAVFSM-EMSASQLAMRLISSNGRINAQRLRTGALEDEDWA 300 (476)
T ss_pred ceEEEEeCCCCChhHHHHHHHHHHHHh--------cCCceEEEec-cCCHHHHHHHHHHhhCCCcHHHHhcCCCCHHHHH
Confidence 447899999999997655444333222 1334666654 444567777765543333321111 22121111
Q ss_pred -----hHHhhcCCCEEEE-----ChHHHHHHHHhcCCCCCCccEEEEchhhhhc
Q 007106 215 -----MRALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 215 -----~~~l~~~~~Ilv~-----T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~ 258 (618)
...+. ..++.|. |++.+...+..-.. -..+++||||=.+.+.
T Consensus 301 ~~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 301 RVTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcC
Confidence 11222 2344443 45666544433211 2458899999998764
No 389
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.87 E-value=0.47 Score=53.73 Aligned_cols=45 Identities=13% Similarity=0.204 Sum_probs=26.1
Q ss_pred ccEEEEchhhhhccCCc----HHHHHHHHHhCCCCCcEEEEEecCChHH
Q 007106 246 VQFVVLDEADQMLSVGF----AEDVEVILERLPQNRQSMMFSATMPPWI 290 (618)
Q Consensus 246 ~~~vViDEaH~~~~~~~----~~~~~~il~~l~~~~~~l~lSAT~~~~~ 290 (618)
-.+|+|||+|.+...+. ...+..++..+-..-++.++.||-+++.
T Consensus 279 ~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 279 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 35899999999865431 2333344443333445666666655543
No 390
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.85 E-value=0.16 Score=55.05 Aligned_cols=40 Identities=13% Similarity=0.146 Sum_probs=25.0
Q ss_pred CCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEE
Q 007106 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
..+.+++||||+|+|... ....+.+.++..+....+|+.|
T Consensus 117 ~g~~kViIIDEa~~ls~~-a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQ-SFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 346789999999987543 2334445555545555555555
No 391
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.82 E-value=0.16 Score=55.26 Aligned_cols=19 Identities=32% Similarity=0.249 Sum_probs=15.4
Q ss_pred CCEEEEccCCChhHHHHHH
Q 007106 137 RDMIGRARTGTGKTLAFGI 155 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~ 155 (618)
+.+|+.||.|+|||..+..
T Consensus 39 hA~Lf~GP~GvGKTTlA~~ 57 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKI 57 (605)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3489999999999986643
No 392
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.81 E-value=0.26 Score=54.23 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=14.6
Q ss_pred EEEEccCCChhHHHHHH
Q 007106 139 MIGRARTGTGKTLAFGI 155 (618)
Q Consensus 139 ~ll~~~tGsGKT~~~l~ 155 (618)
+|+.++.|+|||.++.+
T Consensus 41 ~Lf~Gp~GvGKTtlAr~ 57 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRI 57 (618)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 69999999999987654
No 393
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.77 E-value=0.36 Score=53.20 Aligned_cols=40 Identities=15% Similarity=0.190 Sum_probs=24.5
Q ss_pred CCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEE
Q 007106 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
..+++++||||+|+|... -...+.+.++.-+....+|+.|
T Consensus 117 ~~~~KVvIIdev~~Lt~~-a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTN-AFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHH-HHHHHHHHHHcCCCCeEEEEEe
Confidence 457899999999987532 2334445555544455555544
No 394
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.71 E-value=0.35 Score=48.22 Aligned_cols=19 Identities=32% Similarity=0.153 Sum_probs=15.9
Q ss_pred CCCEEEEccCCChhHHHHH
Q 007106 136 GRDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l 154 (618)
..++++.+|+|+|||.++.
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 3479999999999998663
No 395
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.69 E-value=0.88 Score=47.63 Aligned_cols=18 Identities=28% Similarity=0.130 Sum_probs=14.9
Q ss_pred CCEEEEccCCChhHHHHH
Q 007106 137 RDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l 154 (618)
..+.+.++||+|||.+..
T Consensus 192 ~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTA 209 (420)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 458899999999998654
No 396
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.65 E-value=0.2 Score=49.81 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=14.8
Q ss_pred CEEEEccCCChhHHHHHH
Q 007106 138 DMIGRARTGTGKTLAFGI 155 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~l~ 155 (618)
.+++.+|||+|||.+...
T Consensus 196 vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAK 213 (282)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999986543
No 397
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.64 E-value=0.23 Score=53.57 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=14.1
Q ss_pred EEEEccCCChhHHHHH
Q 007106 139 MIGRARTGTGKTLAFG 154 (618)
Q Consensus 139 ~ll~~~tGsGKT~~~l 154 (618)
+|+.+|.|+|||.++.
T Consensus 39 ~Lf~GppGtGKTTlA~ 54 (504)
T PRK14963 39 YLFSGPRGVGKTTTAR 54 (504)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5999999999998764
No 398
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.64 E-value=0.92 Score=46.01 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=24.4
Q ss_pred CCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEE
Q 007106 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
...++|||||+|.+... ....+..+++..+....+|+.+
T Consensus 101 ~~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 101 APFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CCceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 34679999999987432 2334555555555566665544
No 399
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=93.59 E-value=0.57 Score=49.93 Aligned_cols=139 Identities=18% Similarity=0.079 Sum_probs=67.6
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEE-EcCcchhhh
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISHQ 214 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~-~g~~~~~~~ 214 (618)
+.-++|.|++|+|||..++-.+...+.+ .+..+++++. ..-..|+.+++.....++....+ .+.....++
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~--------~g~~vl~~Sl-Em~~~~i~~R~~~~~~~v~~~~~~~g~l~~~~~ 265 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIK--------EGKPVAFFSL-EMSAEQLAMRMLSSESRVDSQKLRTGKLSDEDW 265 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHh--------CCCeEEEEeC-cCCHHHHHHHHHHHhcCCCHHHhccCCCCHHHH
Confidence 3447999999999997555444443322 1345666654 34455555555443323322111 121121111
Q ss_pred ------hHHhhcCCCEEE-----EChHHHHHHHHhcCCCCCCccEEEEchhhhhccCC----cHHHHHHHHHhCC-----
Q 007106 215 ------MRALDYGVDAVV-----GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG----FAEDVEVILERLP----- 274 (618)
Q Consensus 215 ------~~~l~~~~~Ilv-----~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~----~~~~~~~il~~l~----- 274 (618)
...+.. ..+.| .|++.+...+..-.. -..+++||||=.+.+.... ....+..+.+.++
T Consensus 266 ~~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~-~~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e 343 (434)
T TIGR00665 266 EKLTSAAGKLSE-APLYIDDTPGLTITELRAKARRLKR-EHGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKALAKE 343 (434)
T ss_pred HHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 112222 33444 245556544433211 1358899999998764322 2233444444432
Q ss_pred CCCcEEEEEec
Q 007106 275 QNRQSMMFSAT 285 (618)
Q Consensus 275 ~~~~~l~lSAT 285 (618)
.++.++++|-.
T Consensus 344 ~~i~vi~lsql 354 (434)
T TIGR00665 344 LNVPVIALSQL 354 (434)
T ss_pred hCCeEEEEecc
Confidence 25556665543
No 400
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=93.58 E-value=0.048 Score=50.01 Aligned_cols=44 Identities=25% Similarity=0.265 Sum_probs=29.9
Q ss_pred HHhhcCCCEEEEChHHHHHHHHhcCCC--CCCccEEEEchhhhhcc
Q 007106 216 RALDYGVDAVVGTPGRVIDLIKRNALN--LSEVQFVVLDEADQMLS 259 (618)
Q Consensus 216 ~~l~~~~~Ilv~T~~~l~~~l~~~~~~--l~~~~~vViDEaH~~~~ 259 (618)
+.....++|||+++..|++......+. ..+-.+|||||||.+.+
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 444556899999999997655443332 23456999999998754
No 401
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=93.57 E-value=0.17 Score=51.56 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=23.9
Q ss_pred ChHHHHHHHHHHh----CC---CCEEEEccCCChhHHHHH
Q 007106 122 LFPIQKAVLEPAM----QG---RDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 122 l~~~Q~~~i~~i~----~~---~~~ll~~~tGsGKT~~~l 154 (618)
++|||...|..+. ++ +-.|+.+|.|.||+..+.
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~ 42 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHH
Confidence 5677777776654 33 247899999999997654
No 402
>PRK05636 replicative DNA helicase; Provisional
Probab=93.50 E-value=0.39 Score=51.77 Aligned_cols=110 Identities=14% Similarity=0.091 Sum_probs=52.1
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEE-cCcchhhhh-
Q 007106 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY-GGTPISHQM- 215 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~-g~~~~~~~~- 215 (618)
-++|.|.+|.|||..++..+.....+ .+..++|+.. ..-..|+..++......+....+. +..+..++.
T Consensus 267 Liiiaarpg~GKT~~al~~a~~~a~~--------~g~~v~~fSl-EMs~~ql~~R~ls~~s~v~~~~i~~g~l~~~e~~~ 337 (505)
T PRK05636 267 MIIVAARPGVGKSTLALDFMRSASIK--------HNKASVIFSL-EMSKSEIVMRLLSAEAEVRLSDMRGGKMDEDAWEK 337 (505)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCeEEEEEe-eCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHH
Confidence 37889999999997655443332222 1345666632 333444444443322222211111 111212211
Q ss_pred -----HHhhcCCCEEEE-----ChHHHHHHHHhcCCCCCCccEEEEchhhhhc
Q 007106 216 -----RALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 216 -----~~l~~~~~Ilv~-----T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~ 258 (618)
..+. ..++.|. |...+...+..-.. -..+++||||=.|.|.
T Consensus 338 ~~~a~~~l~-~~~l~I~d~~~~ti~~I~~~~r~~~~-~~~~~lvvIDYLql~~ 388 (505)
T PRK05636 338 LVQRLGKIA-QAPIFIDDSANLTMMEIRSKARRLKQ-KHDLKLIVVDYLQLMS 388 (505)
T ss_pred HHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcC
Confidence 1121 2344442 44444433332111 2358899999999775
No 403
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.49 E-value=0.16 Score=56.50 Aligned_cols=18 Identities=33% Similarity=0.303 Sum_probs=14.9
Q ss_pred CEEEEccCCChhHHHHHH
Q 007106 138 DMIGRARTGTGKTLAFGI 155 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~l~ 155 (618)
-+|+.||.|+|||.++.+
T Consensus 42 AYLF~GP~GtGKTt~Ari 59 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKI 59 (725)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 368999999999987643
No 404
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.47 E-value=0.22 Score=50.17 Aligned_cols=63 Identities=21% Similarity=0.328 Sum_probs=39.7
Q ss_pred HHHcCCCCChHHHHHHHHHHh-CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHH
Q 007106 114 LARRGISKLFPIQKAVLEPAM-QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (618)
Q Consensus 114 l~~~~~~~l~~~Q~~~i~~i~-~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~L 185 (618)
+.+.+. +++.|.+.+..+. ...++|++++||||||. ++-+++..+.+. ....+++++=.+.||
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTT-ll~aL~~~i~~~------~~~~rivtiEd~~El 186 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTT-LANAVIAEIVAS------APEDRLVILEDTAEI 186 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHHhcC------CCCceEEEecCCccc
Confidence 334444 5677777766554 45789999999999996 445555554321 113466776666665
No 405
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.43 E-value=0.83 Score=53.85 Aligned_cols=44 Identities=20% Similarity=0.448 Sum_probs=34.7
Q ss_pred CccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCCh
Q 007106 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (618)
Q Consensus 245 ~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~ 288 (618)
.--+||||++|.+.+......+..++...+.+.++|+.|-+.|+
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 34579999999886555566788888889989999888887554
No 406
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.41 E-value=1.2 Score=42.48 Aligned_cols=18 Identities=33% Similarity=0.421 Sum_probs=15.8
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
-+.+|+.+|+|+|||+++
T Consensus 211 pkgvllygppgtgktl~a 228 (435)
T KOG0729|consen 211 PKGVLLYGPPGTGKTLCA 228 (435)
T ss_pred CCceEEeCCCCCchhHHH
Confidence 367999999999999876
No 407
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.40 E-value=0.62 Score=47.39 Aligned_cols=39 Identities=26% Similarity=0.406 Sum_probs=23.8
Q ss_pred CCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEE
Q 007106 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
...++||||||+.|... ....+.+.+..-+.+..+|+.+
T Consensus 108 ~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 108 GGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEc
Confidence 57899999999987542 3334444444444455555544
No 408
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.36 E-value=0.63 Score=49.58 Aligned_cols=91 Identities=15% Similarity=0.122 Sum_probs=52.2
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhh
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~ 215 (618)
+.-++|.+++|+|||..++..+.. +.+ .+.+++|+.. .+-..|+..+...+........+..
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~-~a~--------~g~kvlYvs~-EEs~~qi~~ra~rlg~~~~~l~~~~-------- 155 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQ-LAK--------NQMKVLYVSG-EESLQQIKMRAIRLGLPEPNLYVLS-------- 155 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH-HHh--------cCCcEEEEEC-cCCHHHHHHHHHHcCCChHHeEEcC--------
Confidence 355899999999999765544333 222 1356888876 4556677666555421111011100
Q ss_pred HHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhcc
Q 007106 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (618)
Q Consensus 216 ~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~ 259 (618)
-.+.+.+...+.. .+.++||||.+..+..
T Consensus 156 ----------e~~~~~I~~~i~~-----~~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 156 ----------ETNWEQICANIEE-----ENPQACVIDSIQTLYS 184 (454)
T ss_pred ----------CCCHHHHHHHHHh-----cCCcEEEEecchhhcc
Confidence 0234555555543 3567899999997653
No 409
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.31 E-value=1.1 Score=41.53 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=22.4
Q ss_pred CCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEE
Q 007106 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~l 282 (618)
.....+|||||+|++... ....+...++..++...+|++
T Consensus 94 ~~~~kviiide~~~l~~~-~~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA-AANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred cCCeEEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEE
Confidence 456789999999997542 223344444443333444444
No 410
>PF05729 NACHT: NACHT domain
Probab=93.30 E-value=0.56 Score=42.14 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=13.5
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
-++|.|+.|+|||..+
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 3789999999999744
No 411
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.23 E-value=0.2 Score=46.07 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=27.2
Q ss_pred HHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHH
Q 007106 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (618)
Q Consensus 132 ~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~ 189 (618)
.+.+++++++.+++|+|||..+... ...+.. .+..++++ +..+|..++
T Consensus 43 ~~~~~~~l~l~G~~G~GKThLa~ai-~~~~~~--------~g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 43 FIENGENLILYGPPGTGKTHLAVAI-ANEAIR--------KGYSVLFI-TASDLLDEL 90 (178)
T ss_dssp S-SC--EEEEEESTTSSHHHHHHHH-HHHHHH--------TT--EEEE-EHHHHHHHH
T ss_pred CcccCeEEEEEhhHhHHHHHHHHHH-HHHhcc--------CCcceeEe-ecCceeccc
Confidence 3445678999999999999876443 333333 14445554 545665544
No 412
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.21 E-value=0.072 Score=51.43 Aligned_cols=13 Identities=23% Similarity=0.503 Sum_probs=11.7
Q ss_pred EEEEccCCChhHH
Q 007106 139 MIGRARTGTGKTL 151 (618)
Q Consensus 139 ~ll~~~tGsGKT~ 151 (618)
++|.|+.|||||.
T Consensus 1 ~vv~G~pGsGKSt 13 (234)
T PF01443_consen 1 IVVHGVPGSGKST 13 (234)
T ss_pred CEEEcCCCCCHHH
Confidence 4789999999997
No 413
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=93.19 E-value=0.77 Score=43.87 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=18.9
Q ss_pred HhCCC-CEEEEccCCChhHHHHHHHHHHH
Q 007106 133 AMQGR-DMIGRARTGTGKTLAFGIPILDK 160 (618)
Q Consensus 133 i~~~~-~~ll~~~tGsGKT~~~l~~~l~~ 160 (618)
+..++ -+.++++.|||||++.- +++..
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~R-al~~s 74 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRR-ALLAS 74 (269)
T ss_pred HhcCCceEEEEecCCCchhHHHH-HHHHh
Confidence 34445 47899999999998765 44433
No 414
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=93.17 E-value=0.47 Score=54.37 Aligned_cols=147 Identities=20% Similarity=0.252 Sum_probs=78.1
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCC-hHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007106 96 DEGLDISKLDISQDIVAALARRGISKL-FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (618)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l-~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~ 174 (618)
.....|+.++.-..++..|+..-...+ +|-+..-+ .|..-+.+|+.+|.|+|||+++-
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~-~itpPrgvL~~GppGTGkTl~ar-------------------- 317 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNF-NITPPRGVLFHGPPGTGKTLMAR-------------------- 317 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhc-ccCCCcceeecCCCCCchhHHHH--------------------
Confidence 455667888877777777776533322 22221111 22333569999999999998542
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchh
Q 007106 175 LCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (618)
Q Consensus 175 ~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEa 254 (618)
+||.......++. ....+.-...-..-|+..++=+.++....- -.....+.+||+
T Consensus 318 ---------aLa~~~s~~~~ki---------------sffmrkgaD~lskwvgEaERqlrllFeeA~-k~qPSIIffdeI 372 (1080)
T KOG0732|consen 318 ---------ALAAACSRGNRKI---------------SFFMRKGADCLSKWVGEAERQLRLLFEEAQ-KTQPSIIFFDEI 372 (1080)
T ss_pred ---------hhhhhhccccccc---------------chhhhcCchhhccccCcHHHHHHHHHHHHh-ccCceEEecccc
Confidence 1111111111110 000000000012335666665555544322 345678999999
Q ss_pred hhhccC----------CcHHHHHHHHHhCCCCCcEEEEEecCCh
Q 007106 255 DQMLSV----------GFAEDVEVILERLPQNRQSMMFSATMPP 288 (618)
Q Consensus 255 H~~~~~----------~~~~~~~~il~~l~~~~~~l~lSAT~~~ 288 (618)
+=+.-. .....+..++.-++..-|+++.+||.-+
T Consensus 373 dGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRp 416 (1080)
T KOG0732|consen 373 DGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRP 416 (1080)
T ss_pred ccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCc
Confidence 933211 1234444555666778899999999644
No 415
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.15 E-value=0.97 Score=44.36 Aligned_cols=37 Identities=14% Similarity=0.031 Sum_probs=26.0
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcC
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~P 181 (618)
+.-++|.+++|+|||..++..+...+.+ +.+++++.-
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~---------Ge~vlyis~ 72 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR---------GNPVLFVTV 72 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC---------CCcEEEEEe
Confidence 3458999999999998766555544322 557788773
No 416
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.11 E-value=0.51 Score=51.35 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=24.0
Q ss_pred CCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEE
Q 007106 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
..+.+++||||+|+|.... ...+.+.++..+....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a-~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHH-HHHHHHHHhCCCCCEEEEEEe
Confidence 3567899999999875421 223344444444455555554
No 417
>PRK10867 signal recognition particle protein; Provisional
Probab=93.11 E-value=0.76 Score=48.39 Aligned_cols=55 Identities=9% Similarity=0.140 Sum_probs=28.9
Q ss_pred CCccEEEEchhhhhcc-CCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhc
Q 007106 244 SEVQFVVLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~-~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l 298 (618)
..+++||||=+=++.. ...-..+..+...+.+..-+++++|+........+..|.
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~ 237 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFN 237 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHH
Confidence 3567788877765421 112233444444444444467777776555544444443
No 418
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.01 E-value=4.3 Score=41.08 Aligned_cols=55 Identities=13% Similarity=0.234 Sum_probs=31.6
Q ss_pred CCCccEEEEchhhhhccC-CcHHHHHHHHHhC------CCCCcEEEEEecCChHHHHHHHHh
Q 007106 243 LSEVQFVVLDEADQMLSV-GFAEDVEVILERL------PQNRQSMMFSATMPPWIRSLTNKY 297 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~-~~~~~~~~il~~l------~~~~~~l~lSAT~~~~~~~~~~~~ 297 (618)
..++++||||=+-++... ..-..+.++.+.+ .+...+++++||........+..+
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 357899999998875422 1223444444332 233457889999765444444444
No 419
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.00 E-value=0.63 Score=53.21 Aligned_cols=54 Identities=13% Similarity=0.098 Sum_probs=29.1
Q ss_pred CCCCccCCCCCHHHHHHHHHc---CCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007106 97 EGLDISKLDISQDIVAALARR---GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~---~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~ 153 (618)
+..+|+++.-..+.++.+.+. .+..+.-++. + .+...+.+++.+|+|+|||..+
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~--~-gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEH--L-GIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHh--c-CCCCCceEEEECCCCCChHHHH
Confidence 445666665555555555432 1111111111 1 1233467999999999999743
No 420
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.97 E-value=0.38 Score=48.27 Aligned_cols=64 Identities=27% Similarity=0.418 Sum_probs=38.9
Q ss_pred HHHHcCCCCChHHHHHHHHH-HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHH
Q 007106 113 ALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (618)
Q Consensus 113 ~l~~~~~~~l~~~Q~~~i~~-i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~L 185 (618)
.|.+.+. +++.|.+.+.. +....+++++++||||||. ++.+++..+.+. ....+++++=.+.|+
T Consensus 110 ~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~al~~~i~~~------~~~~ri~tiEd~~El 174 (299)
T TIGR02782 110 DYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTT-LANALLAEIAKN------DPTDRVVIIEDTREL 174 (299)
T ss_pred HHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHhhcc------CCCceEEEECCchhh
Confidence 3434443 44555555554 4456789999999999996 345555554220 113467777777676
No 421
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.93 E-value=2.3 Score=46.21 Aligned_cols=102 Identities=18% Similarity=0.225 Sum_probs=63.1
Q ss_pred CCeEEEEecchhHHHHHHHHHHcc--------CCccccccCCCHHHHHHHHHHHh----cCCccEEEEc--cccccCCCC
Q 007106 344 GGKCIVFTQTKRDADRLAHAMAKS--------YNCEPLHGDISQSQRERTLSAFR----DGRFNILIAT--DVAARGLDV 409 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~~--------~~~~~lhg~~~~~~r~~i~~~f~----~g~~~vLVaT--~~~~~Gidi 409 (618)
++-+++|+|+.+....+.+...+. .+...+-...+ -+.+++.+. .|.-.+|+|. .-+++|||+
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF 705 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINF 705 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccccc
Confidence 467999999999998888877531 11111222222 234555553 3444455554 568999999
Q ss_pred CC--ccEEEEcCCCCC----hh----------------------------HHHHhhhccCCCCCcceEEEEec
Q 007106 410 PN--VDLIIHYELPNT----SE----------------------------TFVHRTGRTGRAGKKGSAILIYT 448 (618)
Q Consensus 410 ~~--~~~VI~~~~p~~----~~----------------------------~~~Qr~GR~gR~g~~g~~~~~~~ 448 (618)
.+ .+.||..++|.. ++ ..-|-||||-|.-++=.++++++
T Consensus 706 ~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD 778 (821)
T KOG1133|consen 706 SDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLD 778 (821)
T ss_pred ccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEeh
Confidence 87 677888777752 11 12399999999755544444443
No 422
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=0.6 Score=48.41 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=26.8
Q ss_pred CCccEEEEchhhhhccCC--------cHHHHHHHHHh----CCCCCcEEEEEecCCh
Q 007106 244 SEVQFVVLDEADQMLSVG--------FAEDVEVILER----LPQNRQSMMFSATMPP 288 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~--------~~~~~~~il~~----l~~~~~~l~lSAT~~~ 288 (618)
....+++|||+|.++..- .....+.++.. ..++-+++++.||=-+
T Consensus 244 ~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P 300 (428)
T KOG0740|consen 244 LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRP 300 (428)
T ss_pred cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCc
Confidence 356788899999886431 12222333322 2345589999999433
No 423
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=92.82 E-value=0.5 Score=47.70 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=33.2
Q ss_pred EEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEec
Q 007106 226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (618)
Q Consensus 226 v~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT 285 (618)
|-....+.+.+..... ....+++||||+|.|... -...+.++++.-+ +..+|++|..
T Consensus 106 id~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 106 LEQIREIKRFLSRPPL-EAPRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred HHHHHHHHHHHccCcc-cCCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEECC
Confidence 3344445455544333 357899999999987432 3344555555555 5555555544
No 424
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=92.71 E-value=0.74 Score=49.97 Aligned_cols=55 Identities=16% Similarity=0.088 Sum_probs=30.8
Q ss_pred CCCCCccCCCCCHHHHHHHHHcC--CCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007106 96 DEGLDISKLDISQDIVAALARRG--ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~--~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~ 153 (618)
.+...|+++.-.+++.+.+...- +..+..++..- ....+.+|+.+|+|+|||+.+
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHHH
Confidence 34566777766666665554311 11122222111 122356999999999999754
No 425
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=92.68 E-value=2 Score=41.27 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=23.0
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcC
Q 007106 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~P 181 (618)
+++|+|++|||||. +++.++..+.. .-..+++++|
T Consensus 15 r~viIG~sGSGKT~-li~~lL~~~~~--------~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTT-LIKSLLYYLRH--------KFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHH-HHHHHHHhhcc--------cCCEEEEEec
Confidence 68999999999995 44555544322 1235666667
No 426
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=92.68 E-value=0.58 Score=47.80 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=15.2
Q ss_pred CCEEEEccCCChhHHHHH
Q 007106 137 RDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l 154 (618)
.++++.+|+|+|||..+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 469999999999997553
No 427
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.68 E-value=1 Score=52.22 Aligned_cols=18 Identities=22% Similarity=0.253 Sum_probs=15.4
Q ss_pred CCEEEEccCCChhHHHHH
Q 007106 137 RDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l 154 (618)
.+.|+.+|+|+|||..+-
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 579999999999997553
No 428
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=92.66 E-value=0.33 Score=54.78 Aligned_cols=77 Identities=19% Similarity=0.371 Sum_probs=57.9
Q ss_pred cCCeEEEEecchhHHHHHHHHHHcc------CCccc-cccCCCHHHHHHHHHHHhcCCccEEEEcccc-ccCCC-CC--C
Q 007106 343 KGGKCIVFTQTKRDADRLAHAMAKS------YNCEP-LHGDISQSQRERTLSAFRDGRFNILIATDVA-ARGLD-VP--N 411 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~~------~~~~~-lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~-~~Gid-i~--~ 411 (618)
+++++++.+||..-+.++++.|.+. +.+.. +|+.++..++++++++|.+|+.+|||+|..+ ..-.| +. .
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~k 203 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLK 203 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccC
Confidence 5689999999999999998887541 22222 8999999999999999999999999999753 22222 22 3
Q ss_pred ccEEEEcC
Q 007106 412 VDLIIHYE 419 (618)
Q Consensus 412 ~~~VI~~~ 419 (618)
.++|+.-|
T Consensus 204 FdfifVDD 211 (1187)
T COG1110 204 FDFIFVDD 211 (1187)
T ss_pred CCEEEEcc
Confidence 56666544
No 429
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.64 E-value=0.22 Score=50.28 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=14.5
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
.++++.+|+|+|||..+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999754
No 430
>PRK06321 replicative DNA helicase; Provisional
Probab=92.62 E-value=0.98 Score=48.36 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=56.1
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEE-EcCcchhhhh
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISHQM 215 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~-~g~~~~~~~~ 215 (618)
.=++|.|.+|.|||..++- +...+... .+..++|++. ..-..|+.+++......+...-+ .+.....++.
T Consensus 227 ~LiiiaarPgmGKTafal~-ia~~~a~~-------~g~~v~~fSL-EMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~ 297 (472)
T PRK06321 227 NLMILAARPAMGKTALALN-IAENFCFQ-------NRLPVGIFSL-EMTVDQLIHRIICSRSEVESKKISVGDLSGRDFQ 297 (472)
T ss_pred cEEEEEeCCCCChHHHHHH-HHHHHHHh-------cCCeEEEEec-cCCHHHHHHHHHHhhcCCCHHHhhcCCCCHHHHH
Confidence 3378899999999976544 33333210 1334666643 34445555555433222322111 1222222221
Q ss_pred ------HHhhcCCCEEEE-----ChHHHHHHHHhcCCCCCCccEEEEchhhhhc
Q 007106 216 ------RALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 216 ------~~l~~~~~Ilv~-----T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~ 258 (618)
..+. ...+.|- |.+.+...+..-.. -..+++||||=.+.+.
T Consensus 298 ~~~~a~~~l~-~~~~~idd~~~~ti~~i~~~~r~~~~-~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 298 RIVSVVNEMQ-EHTLLIDDQPGLKITDLRARARRMKE-SYDIQFLIIDYLQLLS 349 (472)
T ss_pred HHHHHHHHHH-cCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHHcC
Confidence 1222 2345554 55556544443221 2458899999999775
No 431
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=92.61 E-value=0.17 Score=50.22 Aligned_cols=57 Identities=23% Similarity=0.194 Sum_probs=43.4
Q ss_pred CCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcC
Q 007106 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (618)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~P 181 (618)
.+...++.|..-+.++.+..-++..+|-|+|||+.+...+...+.+ +.-.++|..=|
T Consensus 125 ~I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~-------~~v~rIiLtRP 181 (348)
T COG1702 125 SIIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGA-------GQVRRIILTRP 181 (348)
T ss_pred ceEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhh-------cccceeeecCc
Confidence 3566899999999999998778999999999999877777766644 12234555556
No 432
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.56 E-value=0.83 Score=43.72 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=35.2
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
+.-+++.+++|+|||..++..+...+.+ +..++++.. .+-.+++.+.+..+.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~---------g~~~~y~s~-e~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN---------GEKAMYISL-EEREERILGYAKSKG 67 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC---------CCeEEEEEC-CCCHHHHHHHHHHcC
Confidence 3558999999999997665554444322 556777765 456677777776654
No 433
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=92.54 E-value=0.45 Score=46.55 Aligned_cols=41 Identities=17% Similarity=0.327 Sum_probs=26.8
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHH
Q 007106 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (618)
Q Consensus 139 ~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La 186 (618)
.+|.+||||||+- ++..++......+ ....+++|+|++..+
T Consensus 90 ~~VYGPTG~GKSq-----LlRNLis~~lI~P--~PETVfFItP~~~mI 130 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ-----LLRNLISCQLIQP--PPETVFFITPQKDMI 130 (369)
T ss_pred EEEECCCCCCHHH-----HHHHhhhcCcccC--CCCceEEECCCCCCC
Confidence 5789999999995 3444444333222 245799999987443
No 434
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.54 E-value=0.24 Score=53.43 Aligned_cols=40 Identities=13% Similarity=0.222 Sum_probs=26.3
Q ss_pred CCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEE
Q 007106 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
....+++||||+|+|... -...+.+.++..++.+.+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~-A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKE-AFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHH-HHHHHHHHHhhcCCceEEEEEE
Confidence 457889999999987543 2334455555555666666655
No 435
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.53 E-value=1.2 Score=50.73 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=15.0
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
.++|+.+|+|+|||..+
T Consensus 204 ~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CceEEECCCCCCHHHHH
Confidence 57999999999999764
No 436
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.51 E-value=0.43 Score=47.90 Aligned_cols=56 Identities=21% Similarity=0.173 Sum_probs=33.6
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCCh-HHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007106 98 GLDISKLDISQDIVAALARRGISKLF-PIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~-~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~ 153 (618)
..+|.+++--+.+++.|+..-+..++ |-.-.--..+...+.+|+.+|+|+|||+.+
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlA 144 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLA 144 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHH
Confidence 34677777777777777654332221 111111122234467999999999999855
No 437
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.41 E-value=0.43 Score=48.24 Aligned_cols=65 Identities=22% Similarity=0.347 Sum_probs=40.9
Q ss_pred HHHHHcCCCCChHHHHHHHHHH-hCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHH
Q 007106 112 AALARRGISKLFPIQKAVLEPA-MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (618)
Q Consensus 112 ~~l~~~~~~~l~~~Q~~~i~~i-~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~L 185 (618)
+.|.+.+. +++.|.+.+..+ ....++++.++||||||. ++.+++..+... ....+++++-.+.||
T Consensus 125 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~------~~~~rivtIEd~~El 190 (319)
T PRK13894 125 DQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQ------DPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhc------CCCceEEEEcCCCcc
Confidence 34444444 456777777654 556789999999999994 445555543210 123467777666665
No 438
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.36 E-value=1.1 Score=47.98 Aligned_cols=18 Identities=39% Similarity=0.335 Sum_probs=14.9
Q ss_pred CEEEEccCCChhHHHHHH
Q 007106 138 DMIGRARTGTGKTLAFGI 155 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~l~ 155 (618)
.+|+.+|+|+|||..+.+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 379999999999986643
No 439
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=92.23 E-value=0.12 Score=47.24 Aligned_cols=35 Identities=17% Similarity=0.095 Sum_probs=22.6
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc
Q 007106 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (618)
Q Consensus 139 ~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt 182 (618)
.++.+|+.||||...+.-+ ..+.. .+.+++++-|.
T Consensus 4 ~~i~GpM~sGKS~eLi~~~-~~~~~--------~~~~v~~~kp~ 38 (176)
T PF00265_consen 4 EFITGPMFSGKSTELIRRI-HRYEI--------AGKKVLVFKPA 38 (176)
T ss_dssp EEEEESTTSSHHHHHHHHH-HHHHH--------TT-EEEEEEES
T ss_pred EEEECCcCChhHHHHHHHH-HHHHh--------CCCeEEEEEec
Confidence 4788999999997543333 22211 26678998885
No 440
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.01 E-value=1.2 Score=46.76 Aligned_cols=69 Identities=17% Similarity=0.278 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHcCCCCChHHHHHHHHH-------HhCC-----CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCC
Q 007106 103 KLDISQDIVAALARRGISKLFPIQKAVLEP-------AMQG-----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGR 170 (618)
Q Consensus 103 ~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~-------i~~~-----~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~ 170 (618)
.++.+++-++.+...++....+.=.+.+.. +... ..+|+.+|.|||||..+.-.++.
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~----------- 561 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS----------- 561 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh-----------
Confidence 456777777777777665555444444332 1111 24899999999999643222221
Q ss_pred CCCCeEEEEcCc
Q 007106 171 GRNPLCLVLAPT 182 (618)
Q Consensus 171 ~~~~~~lil~Pt 182 (618)
..-|.+=|+.|.
T Consensus 562 S~FPFvKiiSpe 573 (744)
T KOG0741|consen 562 SDFPFVKIISPE 573 (744)
T ss_pred cCCCeEEEeChH
Confidence 125667777773
No 441
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.97 E-value=0.56 Score=49.29 Aligned_cols=18 Identities=33% Similarity=0.305 Sum_probs=15.1
Q ss_pred CEEEEccCCChhHHHHHH
Q 007106 138 DMIGRARTGTGKTLAFGI 155 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~l~ 155 (618)
.+|+.+|.|+|||.++.+
T Consensus 40 a~lf~Gp~G~GKtt~A~~ 57 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARV 57 (397)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 388999999999987643
No 442
>CHL00176 ftsH cell division protein; Validated
Probab=91.93 E-value=1.2 Score=49.57 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=14.9
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
+.+|+.+|+|+|||+.+
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56999999999999754
No 443
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=91.93 E-value=0.33 Score=44.64 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=28.6
Q ss_pred CCccEEEEchhhhhccCCcHHHHHHHHHhCCCC-CcEEEEEec
Q 007106 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQN-RQSMMFSAT 285 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~-~~~l~lSAT 285 (618)
.+.+++++||...-++......+...+..+... .++|+.|--
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 567899999999888766666666666655333 555555443
No 444
>PRK05595 replicative DNA helicase; Provisional
Probab=91.89 E-value=0.48 Score=50.58 Aligned_cols=112 Identities=12% Similarity=0.064 Sum_probs=55.5
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEE-cCcchhhhh
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY-GGTPISHQM 215 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~-g~~~~~~~~ 215 (618)
.-++|.|.||.|||..++-.+.....+ .+..++++.. ..-..|+..++.....++....+. +..+..++.
T Consensus 202 ~liviaarpg~GKT~~al~ia~~~a~~--------~g~~vl~fSl-Ems~~~l~~R~~a~~~~v~~~~~~~~~l~~~e~~ 272 (444)
T PRK05595 202 DMILIAARPSMGKTTFALNIAEYAALR--------EGKSVAIFSL-EMSKEQLAYKLLCSEANVDMLRLRTGNLEDKDWE 272 (444)
T ss_pred cEEEEEecCCCChHHHHHHHHHHHHHH--------cCCcEEEEec-CCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHH
Confidence 447889999999997655444332222 1445776654 344455555544332223222111 111111111
Q ss_pred H------HhhcCCCEEE-----EChHHHHHHHHhcCCCCCCccEEEEchhhhhcc
Q 007106 216 R------ALDYGVDAVV-----GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (618)
Q Consensus 216 ~------~l~~~~~Ilv-----~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~ 259 (618)
. .+. ..++.| .|++.+...+..... -..+++||||=.|.|..
T Consensus 273 ~~~~~~~~l~-~~~l~i~d~~~~t~~~i~~~~r~~~~-~~~~~~vvIDylql~~~ 325 (444)
T PRK05595 273 NIARASGPLA-AAKIFIDDTAGVSVMEMRSKCRRLKI-EHGIDMILIDYLQLMSG 325 (444)
T ss_pred HHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEeHHHhccC
Confidence 1 111 123333 244555444433211 23588999999998753
No 445
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.86 E-value=1.3 Score=48.94 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=13.9
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
-+++.+|+|+|||.++
T Consensus 112 illL~GP~GsGKTTl~ 127 (637)
T TIGR00602 112 ILLITGPSGCGKSTTI 127 (637)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3899999999999754
No 446
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=91.84 E-value=1.3 Score=46.65 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=30.6
Q ss_pred CCccEEEEchhhhhcc-CCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhc
Q 007106 244 SEVQFVVLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~-~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l 298 (618)
..+++||||=+-++.. ......+..+...+.+.--++++.||........+..|.
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~ 236 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFN 236 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHH
Confidence 4567788887765431 112334444444454555577778876655555554443
No 447
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=91.81 E-value=3 Score=43.14 Aligned_cols=145 Identities=18% Similarity=0.155 Sum_probs=61.9
Q ss_pred EEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHH----HHHHHHHhCCC-CcEEEEEcCcchhhh
Q 007106 140 IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ----VEKEFHESAPS-LDTICVYGGTPISHQ 214 (618)
Q Consensus 140 ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q----~~~~l~~~~~~-~~~~~~~g~~~~~~~ 214 (618)
|+.++.|+|||.+....++..+.... ....++++ |+...+.+ ....+..+.+. +........ ..
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~------~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 69 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP------PGRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWN----DR 69 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS------S--EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-----SS
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC------CCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCC----CC
Confidence 57889999999987777766665411 11345555 65555444 22333344333 222211000 00
Q ss_pred hHHhhcCCCEEEEChHHH--HHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecC--ChHH
Q 007106 215 MRALDYGVDAVVGTPGRV--IDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM--PPWI 290 (618)
Q Consensus 215 ~~~l~~~~~Ilv~T~~~l--~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~--~~~~ 290 (618)
...+.++..|.+.+.+.- ...+. =..+++||+||+-.+.+..+...+...+.... ....++.|.|+ ....
T Consensus 70 ~~~~~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~p~~~~~~~ 143 (384)
T PF03237_consen 70 KIILPNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELIRRLRATWG-GSIRMYISTPPNPGGWF 143 (384)
T ss_dssp EEEETTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHHHHHHHCST-T--EEEEEE---SSSHH
T ss_pred cEEecCceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHHHhhhhccc-CcceEEeecCCCCCCce
Confidence 011144555666663321 11222 25678999999887654333333333332222 22222444443 3455
Q ss_pred HHHHHHhccCC
Q 007106 291 RSLTNKYLKNP 301 (618)
Q Consensus 291 ~~~~~~~l~~~ 301 (618)
..+......+.
T Consensus 144 ~~~~~~~~~~~ 154 (384)
T PF03237_consen 144 YEIFQRNLDDD 154 (384)
T ss_dssp HHHHHHHHCTS
T ss_pred eeeeehhhcCC
Confidence 55665555544
No 448
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=91.73 E-value=1.2 Score=48.14 Aligned_cols=60 Identities=20% Similarity=0.205 Sum_probs=41.9
Q ss_pred HHHHHHhCC-----CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC
Q 007106 128 AVLEPAMQG-----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 128 ~~i~~i~~~-----~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
..++.++.+ .-++|.+|+|+|||+.++..+...+.+ +.+++|++ ..+-..|+.+.+..+.
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~---------ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN---------KERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 445565543 458999999999998665555544322 55778877 4677788888887653
No 449
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=91.69 E-value=1.2 Score=49.30 Aligned_cols=71 Identities=17% Similarity=0.316 Sum_probs=55.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCccE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~ 248 (618)
..++||+|+|+..++++++.|.+. .+.+..+++..+..++.+.+. ...+||||| +. ....+++.++++
T Consensus 257 ~~k~LVF~nt~~~ae~l~~~L~~~--g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv-~arGIDip~V~~ 328 (572)
T PRK04537 257 GARTMVFVNTKAFVERVARTLERH--GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DV-AARGLHIDGVKY 328 (572)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHc--CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hh-hhcCCCccCCCE
Confidence 568999999999999999999876 467888999887766554433 358999999 33 344567888888
Q ss_pred EEE
Q 007106 249 VVL 251 (618)
Q Consensus 249 vVi 251 (618)
||.
T Consensus 329 VIn 331 (572)
T PRK04537 329 VYN 331 (572)
T ss_pred EEE
Confidence 884
No 450
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=91.65 E-value=0.96 Score=46.92 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=21.1
Q ss_pred HHHhCCCCEEEEccCCChhHHHHHH
Q 007106 131 EPAMQGRDMIGRARTGTGKTLAFGI 155 (618)
Q Consensus 131 ~~i~~~~~~ll~~~tGsGKT~~~l~ 155 (618)
+.+.++.|+++.+|+|+|||..|..
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHH
Confidence 6677888999999999999976653
No 451
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=91.61 E-value=0.92 Score=46.83 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=16.8
Q ss_pred HhCCCCEEEEccCCChhHHH
Q 007106 133 AMQGRDMIGRARTGTGKTLA 152 (618)
Q Consensus 133 i~~~~~~ll~~~tGsGKT~~ 152 (618)
+-.++.++|.+|+|+|||..
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred eCCCCEEEEECCCCCChhHH
Confidence 34577899999999999974
No 452
>PRK07413 hypothetical protein; Validated
Probab=91.60 E-value=18 Score=37.23 Aligned_cols=53 Identities=21% Similarity=0.371 Sum_probs=40.6
Q ss_pred CCCccEEEEchhhhhccCCc--HHHHHHHHHhCCCCCcEEEEEecCChHHHHHHH
Q 007106 243 LSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWIRSLTN 295 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~~~--~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~ 295 (618)
-..+++||+||+-..++.++ ...+..+++.-|....+|++--.+|+++.+++.
T Consensus 123 sg~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~ap~~Lie~AD 177 (382)
T PRK07413 123 SGLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAAPQSLLDIAD 177 (382)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCC
Confidence 45789999999998877664 456667777777778888888888887776553
No 453
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.56 E-value=0.29 Score=56.31 Aligned_cols=101 Identities=17% Similarity=0.185 Sum_probs=72.7
Q ss_pred cCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCC
Q 007106 343 KGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELP 421 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p 421 (618)
.-.++|||+......+.+...+... +.+.. .+. -++-...+..|++ --.+++-+...+.|+|+-++.||+..++-
T Consensus 1220 ~qekvIvfsqws~~ldV~e~~~~~N~I~~~~-~~~--t~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~ePi 1295 (1394)
T KOG0298|consen 1220 EQEKVIVFSQWSVVLDVKELRYLMNLIKKQL-DGE--TEDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLVEPI 1295 (1394)
T ss_pred cCceEEEEEehHHHHHHHHHHHHhhhhHhhh-ccC--Ccchhhhhhhccc-ceEEEEEeccCcccccHHhhhhhheeccc
Confidence 3468999998877777777666432 22222 222 2334455666666 22346667788999999999999999999
Q ss_pred CChhHHHHhhhccCCCCCcceEEEEe
Q 007106 422 NTSETFVHRTGRTGRAGKKGSAILIY 447 (618)
Q Consensus 422 ~~~~~~~Qr~GR~gR~g~~g~~~~~~ 447 (618)
.++..-.|.+||++|.|++-..++..
T Consensus 1296 LN~~~E~QAigRvhRiGQ~~pT~V~~ 1321 (1394)
T KOG0298|consen 1296 LNPGDEAQAIGRVHRIGQKRPTFVHR 1321 (1394)
T ss_pred cCchHHHhhhhhhhhcccccchhhhh
Confidence 99999999999999999876665443
No 454
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=91.54 E-value=0.26 Score=54.05 Aligned_cols=19 Identities=37% Similarity=0.261 Sum_probs=15.3
Q ss_pred CEEEEccCCChhHHHHHHH
Q 007106 138 DMIGRARTGTGKTLAFGIP 156 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~l~~ 156 (618)
-+|+.+|.|+|||.++-+.
T Consensus 40 ayLf~Gp~GtGKTt~Ak~l 58 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIF 58 (559)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4788999999999866443
No 455
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=91.51 E-value=0.37 Score=48.48 Aligned_cols=44 Identities=16% Similarity=0.049 Sum_probs=29.1
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHH
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q 188 (618)
+.-++|.+|+|+|||..++..+...... +..++++..-..+-.+
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~---------g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKA---------GGTAAFIDAEHALDPV 98 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---------CCcEEEEcccchhHHH
Confidence 3458899999999998765555444321 5677877665444443
No 456
>PRK09165 replicative DNA helicase; Provisional
Probab=91.50 E-value=1.2 Score=48.12 Aligned_cols=119 Identities=10% Similarity=0.068 Sum_probs=59.1
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhh------cCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEE-cCc
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEK------HGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY-GGT 209 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~------~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~-g~~ 209 (618)
.-++|.|.||.|||..++-.+.....+.... +....+..++|+.. ..-..|+..++......+....+. +..
T Consensus 218 ~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSl-EMs~~ql~~R~la~~s~v~~~~i~~~~l 296 (497)
T PRK09165 218 DLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSL-EMSAEQLATRILSEQSEISSSKIRRGKI 296 (497)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeC-cCCHHHHHHHHHHHhcCCCHHHHhcCCC
Confidence 3478999999999976655444433221100 00011345666644 455567776665443333221111 222
Q ss_pred chhhhh------HHhhcCCCEEEE-----ChHHHHHHHHhcCCCCCCccEEEEchhhhhc
Q 007106 210 PISHQM------RALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 210 ~~~~~~------~~l~~~~~Ilv~-----T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~ 258 (618)
...++. ..+. ..++.|- |++.+...+.+-.. -..+++||||=.|.+.
T Consensus 297 ~~~e~~~l~~a~~~l~-~~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 297 SEEDFEKLVDASQELQ-KLPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIR 354 (497)
T ss_pred CHHHHHHHHHHHHHHh-cCCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcc
Confidence 211111 1111 2344442 45566544443221 2358899999999765
No 457
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=91.47 E-value=0.86 Score=47.71 Aligned_cols=70 Identities=19% Similarity=0.328 Sum_probs=57.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh---c-CCCEEEEChHHHHHHHHhcCCCCCCccE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD---Y-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~---~-~~~Ilv~T~~~l~~~l~~~~~~l~~~~~ 248 (618)
.+.++|++.++.-|+-+++.|.+.. +.++.+|++....++...|. . ..+|+||| .+....+++.++++
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~g--~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaT------DvAgRGIDIpnVSl 588 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKAG--YKVTTLHGGKSQEQRENALADFREGTGDILVAT------DVAGRGIDIPNVSL 588 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhcc--ceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEe------cccccCCCCCccce
Confidence 5679999999999999999999874 88999999998887765554 3 58999999 44455677899998
Q ss_pred EE
Q 007106 249 VV 250 (618)
Q Consensus 249 vV 250 (618)
||
T Consensus 589 Vi 590 (673)
T KOG0333|consen 589 VI 590 (673)
T ss_pred ee
Confidence 88
No 458
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=91.44 E-value=1.3 Score=46.09 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=15.1
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
.+.+++.+|+|+|||+.+
T Consensus 156 p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356999999999999754
No 459
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.39 E-value=1.4 Score=48.87 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=14.8
Q ss_pred CEEEEccCCChhHHHHHH
Q 007106 138 DMIGRARTGTGKTLAFGI 155 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~l~ 155 (618)
.+|+.+|.|+|||.++.+
T Consensus 40 a~Lf~Gp~G~GKTtlA~~ 57 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARI 57 (585)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 469999999999986543
No 460
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=91.38 E-value=0.48 Score=46.00 Aligned_cols=19 Identities=26% Similarity=0.176 Sum_probs=16.5
Q ss_pred HhCCCCEEEEccCCChhHH
Q 007106 133 AMQGRDMIGRARTGTGKTL 151 (618)
Q Consensus 133 i~~~~~~ll~~~tGsGKT~ 151 (618)
+..++.+++.++.|+|||.
T Consensus 13 i~~Gqr~~I~G~~G~GKTT 31 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTT 31 (249)
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 4467889999999999996
No 461
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.37 E-value=4.2 Score=43.44 Aligned_cols=21 Identities=24% Similarity=0.069 Sum_probs=16.1
Q ss_pred CCEEEEccCCChhHHHHHHHH
Q 007106 137 RDMIGRARTGTGKTLAFGIPI 157 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~ 157 (618)
.-+++.+|||+|||.+....+
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred cEEEEECCCCccHHHHHHHHH
Confidence 347899999999998654433
No 462
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.32 E-value=2 Score=49.68 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=20.1
Q ss_pred HHHHHHHHh----C--CCCEEEEccCCChhHHHH
Q 007106 126 QKAVLEPAM----Q--GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 126 Q~~~i~~i~----~--~~~~ll~~~tGsGKT~~~ 153 (618)
|...+..+. . ..++|+.+|+|+|||..+
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 555555443 2 257999999999999754
No 463
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.30 E-value=2.4 Score=42.36 Aligned_cols=55 Identities=13% Similarity=0.248 Sum_probs=34.1
Q ss_pred CCCccEEEEchhhhhccC-CcHHHHHHHHHhCCCCC------cEEEEEecCChHHHHHHHHh
Q 007106 243 LSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNR------QSMMFSATMPPWIRSLTNKY 297 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~-~~~~~~~~il~~l~~~~------~~l~lSAT~~~~~~~~~~~~ 297 (618)
.+++++|++|=|-||-+. +.-..+++|.+.+.+.. -++.+-||.-.+....+..|
T Consensus 219 ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F 280 (340)
T COG0552 219 ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIF 280 (340)
T ss_pred HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHH
Confidence 467888999999887543 24455666666655433 24445788876555544444
No 464
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=91.26 E-value=0.43 Score=48.08 Aligned_cols=46 Identities=15% Similarity=0.022 Sum_probs=31.0
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHH
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 190 (618)
+.-+.|.+|+|+|||..++..+..... .+..++++.+-..+-.+.+
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~---------~g~~~vyId~E~~~~~~~a 100 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQK---------LGGTVAFIDAEHALDPVYA 100 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---------cCCCEEEECccccHHHHHH
Confidence 345889999999999766555544432 2567888887655554433
No 465
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.19 E-value=1.1 Score=52.06 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=15.0
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
.++|+.+|+|+|||..+
T Consensus 200 ~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIV 216 (857)
T ss_pred CceEEECCCCCCHHHHH
Confidence 47999999999999765
No 466
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.13 E-value=0.26 Score=50.22 Aligned_cols=44 Identities=23% Similarity=0.241 Sum_probs=29.8
Q ss_pred HHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHH
Q 007106 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (618)
Q Consensus 132 ~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~L 185 (618)
++..+.+++|.++||||||. ++.+++..+- ...+++.+-.+.||
T Consensus 158 ~v~~~~nilI~G~tGSGKTT-ll~aLl~~i~---------~~~rivtiEd~~El 201 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTT-MSKTLISAIP---------PQERLITIEDTLEL 201 (344)
T ss_pred HHHcCCeEEEECCCCccHHH-HHHHHHcccC---------CCCCEEEECCCccc
Confidence 45567899999999999996 3445544431 13457777777665
No 467
>PRK09087 hypothetical protein; Validated
Probab=91.04 E-value=0.68 Score=44.39 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=23.7
Q ss_pred cEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEec-CCh
Q 007106 247 QFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT-MPP 288 (618)
Q Consensus 247 ~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT-~~~ 288 (618)
++|+||++|.+.. ....+..++..+......+++|++ .|+
T Consensus 89 ~~l~iDDi~~~~~--~~~~lf~l~n~~~~~g~~ilits~~~p~ 129 (226)
T PRK09087 89 GPVLIEDIDAGGF--DETGLFHLINSVRQAGTSLLMTSRLWPS 129 (226)
T ss_pred CeEEEECCCCCCC--CHHHHHHHHHHHHhCCCeEEEECCCChH
Confidence 3799999997632 245566666665553334555554 444
No 468
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=91.04 E-value=1.2 Score=48.94 Aligned_cols=18 Identities=28% Similarity=0.211 Sum_probs=14.9
Q ss_pred CEEEEccCCChhHHHHHH
Q 007106 138 DMIGRARTGTGKTLAFGI 155 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~l~ 155 (618)
-+|+.+|.|+|||.++.+
T Consensus 40 ayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA 57 (563)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 489999999999986643
No 469
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.03 E-value=1.4 Score=48.71 Aligned_cols=18 Identities=33% Similarity=0.305 Sum_probs=15.2
Q ss_pred CEEEEccCCChhHHHHHH
Q 007106 138 DMIGRARTGTGKTLAFGI 155 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~l~ 155 (618)
.+|+.+|.|+|||.++.+
T Consensus 40 a~Lf~Gp~GvGKttlA~~ 57 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARV 57 (620)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 489999999999987643
No 470
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=91.00 E-value=0.89 Score=43.47 Aligned_cols=56 Identities=16% Similarity=0.365 Sum_probs=28.9
Q ss_pred EChHHHHHHHHhcCCCCCCccEEEEchhhhhc-cC----CcHHHHHHHHHhCCCC-CcEEEEEecC
Q 007106 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQML-SV----GFAEDVEVILERLPQN-RQSMMFSATM 286 (618)
Q Consensus 227 ~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~-~~----~~~~~~~~il~~l~~~-~~~l~lSAT~ 286 (618)
.+...++..+...... -+|||||+|.+. .. .+...+..++...... ...++++++-
T Consensus 104 ~~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 104 SALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp --HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 3445555555543221 689999999988 21 2344555555553322 3344556664
No 471
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=90.97 E-value=0.35 Score=48.29 Aligned_cols=60 Identities=20% Similarity=0.159 Sum_probs=42.0
Q ss_pred CCCCChHHHHHHHHHHhCCC-CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHH
Q 007106 118 GISKLFPIQKAVLEPAMQGR-DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (618)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~-~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (618)
.+..+++-|...+..+.... ++|+++-||||||.. +.+++..+. ..-++|.+--|.||..
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~---------~~eRvItiEDtaELql 214 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFID---------SDERVITIEDTAELQL 214 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCC---------CcccEEEEeehhhhcc
Confidence 45668888988887776654 999999999999962 233333321 1337888888877744
No 472
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.89 E-value=0.87 Score=49.00 Aligned_cols=17 Identities=41% Similarity=0.343 Sum_probs=14.1
Q ss_pred EEEEccCCChhHHHHHH
Q 007106 139 MIGRARTGTGKTLAFGI 155 (618)
Q Consensus 139 ~ll~~~tGsGKT~~~l~ 155 (618)
+|+.+|.|+|||.++.+
T Consensus 41 yLf~Gp~G~GKTtlAr~ 57 (486)
T PRK14953 41 YIFAGPRGTGKTTIARI 57 (486)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68899999999976643
No 473
>PHA00012 I assembly protein
Probab=90.86 E-value=1.4 Score=43.82 Aligned_cols=26 Identities=35% Similarity=0.425 Sum_probs=20.2
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHH
Q 007106 138 DMIGRARTGTGKTLAFGIPILDKIIK 163 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~l~~~l~~i~~ 163 (618)
..++.+..|+|||+.++.-++..+.+
T Consensus 3 iylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 3 VYVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHc
Confidence 35889999999999887766665543
No 474
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=90.84 E-value=4.6 Score=45.24 Aligned_cols=77 Identities=23% Similarity=0.336 Sum_probs=57.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCccE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~ 248 (618)
+.++||+|+|+..++.+.+.|.+. ++.+..+++......+.+.+. ...+|+||| .. ....+.+.++++
T Consensus 442 g~~vLIf~~tk~~ae~L~~~L~~~--gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~-L~rGfDiP~v~l 513 (655)
T TIGR00631 442 NERVLVTTLTKKMAEDLTDYLKEL--GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NL-LREGLDLPEVSL 513 (655)
T ss_pred CCEEEEEECCHHHHHHHHHHHhhh--ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Ch-hcCCeeeCCCcE
Confidence 678999999999999999999876 467778888766544433322 348899999 33 345677899999
Q ss_pred EEEchhhhh
Q 007106 249 VVLDEADQM 257 (618)
Q Consensus 249 vViDEaH~~ 257 (618)
||+-|++..
T Consensus 514 Vvi~Dadif 522 (655)
T TIGR00631 514 VAILDADKE 522 (655)
T ss_pred EEEeCcccc
Confidence 988777653
No 475
>COG1485 Predicted ATPase [General function prediction only]
Probab=90.81 E-value=2.4 Score=42.65 Aligned_cols=109 Identities=19% Similarity=0.221 Sum_probs=63.9
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhH
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~ 216 (618)
+.+-+.+++|.|||. |+.++...+. ...-.-++.-.-+..+++++.++- |..
T Consensus 66 ~GlYl~GgVGrGKT~--LMD~Fy~~lp----------~~~k~R~HFh~FM~~vH~~l~~l~---------g~~------- 117 (367)
T COG1485 66 RGLYLWGGVGRGKTM--LMDLFYESLP----------GERKRRLHFHRFMARVHQRLHTLQ---------GQT------- 117 (367)
T ss_pred ceEEEECCCCccHHH--HHHHHHhhCC----------ccccccccHHHHHHHHHHHHHHHc---------CCC-------
Confidence 458899999999996 3333333211 111234556677777777777652 111
Q ss_pred HhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhC-CCCCcEEEEEecCChHH
Q 007106 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMMFSATMPPWI 290 (618)
Q Consensus 217 ~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l-~~~~~~l~lSAT~~~~~ 290 (618)
+.+ ..+.+.+ ..+..+++|||.| +.|..-...+..+++.+ ...+.++.+|-|.|+.+
T Consensus 118 ------dpl----~~iA~~~------~~~~~vLCfDEF~-VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 118 ------DPL----PPIADEL------AAETRVLCFDEFE-VTDIADAMILGRLLEALFARGVVLVATSNTAPDNL 175 (367)
T ss_pred ------Ccc----HHHHHHH------HhcCCEEEeeeee-ecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHh
Confidence 111 0111111 3467789999999 44443344455555443 45788899999988754
No 476
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=90.81 E-value=1.4 Score=45.27 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=19.2
Q ss_pred hCCCCEEEEccCCChhHHHHHHHHHHHH
Q 007106 134 MQGRDMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 134 ~~~~~~ll~~~tGsGKT~~~l~~~l~~i 161 (618)
-+++..+|.+|.|+|||..+ ..+...+
T Consensus 167 GkGQR~lIvgppGvGKTTLa-K~Ian~I 193 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLL-QNIANSI 193 (416)
T ss_pred ccCceEEEeCCCCCChhHHH-HHHHHHH
Confidence 35788999999999999633 3344444
No 477
>PRK10263 DNA translocase FtsK; Provisional
Probab=90.80 E-value=1.5 Score=51.61 Aligned_cols=41 Identities=20% Similarity=0.364 Sum_probs=25.1
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt 182 (618)
.++||.+.||||||.+.-..++..+.+.. ....++++|=|.
T Consensus 1011 PHLLIAGaTGSGKSv~LntLIlSLl~~~s-----PeeVrl~LIDPK 1051 (1355)
T PRK10263 1011 PHLLVAGTTGSGKSVGVNAMILSMLYKAQ-----PEDVRFIMIDPK 1051 (1355)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHHhCC-----ccceEEEEECCC
Confidence 36899999999999764444444443311 113456666665
No 478
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=90.75 E-value=0.98 Score=46.08 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=25.3
Q ss_pred CCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEe
Q 007106 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSA 284 (618)
....+++||||+|+|... -...+.+.++.-+....+|++|.
T Consensus 108 ~~~~kvviI~~a~~~~~~-a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTAS-AANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHH-HHHHHHHHhcCCCCCceEEEEeC
Confidence 456789999999987433 23344445555445555555444
No 479
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=90.64 E-value=1.3 Score=41.76 Aligned_cols=38 Identities=16% Similarity=0.086 Sum_probs=25.6
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt 182 (618)
+.-+.+.+++|+|||..++..+..... .+.+++++.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~---------~g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAAR---------QGKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh---------CCCeEEEEECC
Confidence 345899999999999876555444332 14567777663
No 480
>PRK07773 replicative DNA helicase; Validated
Probab=90.64 E-value=1 Score=52.49 Aligned_cols=110 Identities=13% Similarity=0.022 Sum_probs=56.1
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEE-cCcchhhhh-
Q 007106 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY-GGTPISHQM- 215 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~-g~~~~~~~~- 215 (618)
-++|.|.+|+|||..++-.+...+.+ .+..++|+. ...-..|+..++......+....+. +.....++.
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~--------~~~~V~~fS-lEms~~ql~~R~~s~~~~i~~~~i~~g~l~~~~~~~ 289 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIR--------HRLAVAIFS-LEMSKEQLVMRLLSAEAKIKLSDMRSGRMSDDDWTR 289 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHh--------cCCeEEEEe-cCCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHH
Confidence 37899999999997665554444322 123455554 3455556666665433333221111 111211111
Q ss_pred -----HHhhcCCCEEE-----EChHHHHHHHHhcCCCCCCccEEEEchhhhhc
Q 007106 216 -----RALDYGVDAVV-----GTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 216 -----~~l~~~~~Ilv-----~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~ 258 (618)
..+. ..++.| .|++.+...+..-.. -..+++||||=.+.|.
T Consensus 290 ~~~a~~~l~-~~~i~i~d~~~~~i~~i~~~~r~~~~-~~~~~lvvIDyLql~~ 340 (886)
T PRK07773 290 LARAMGEIS-EAPIFIDDTPNLTVMEIRAKARRLRQ-EANLGLIVVDYLQLMT 340 (886)
T ss_pred HHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchhhcC
Confidence 1111 234544 355555443332111 1358999999999775
No 481
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.63 E-value=0.49 Score=49.77 Aligned_cols=39 Identities=26% Similarity=0.324 Sum_probs=29.5
Q ss_pred ChHHHHHHHHHHhCCCC--EEEEccCCChhHHHHHHHHHHHH
Q 007106 122 LFPIQKAVLEPAMQGRD--MIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~~--~ll~~~tGsGKT~~~l~~~l~~i 161 (618)
+.+.|.+.+..+++... +|+.+|||||||.+ +..++..+
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~l 282 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSEL 282 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHh
Confidence 36788888887777654 78999999999965 45666555
No 482
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=90.62 E-value=3.8 Score=47.14 Aligned_cols=17 Identities=24% Similarity=0.016 Sum_probs=14.5
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
..+++.+|+|+|||..+
T Consensus 348 ~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLG 364 (775)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45899999999999754
No 483
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=90.57 E-value=0.17 Score=60.34 Aligned_cols=92 Identities=25% Similarity=0.432 Sum_probs=74.8
Q ss_pred eEEEEecchhHHHHHHHHHHcc--CCccccccCCC-----------HHHHHHHHHHHhcCCccEEEEccccccCCCCCCc
Q 007106 346 KCIVFTQTKRDADRLAHAMAKS--YNCEPLHGDIS-----------QSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (618)
Q Consensus 346 ~~lVf~~~~~~~~~l~~~L~~~--~~~~~lhg~~~-----------~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~ 412 (618)
..++|++....+..+.+.+.+. +.+..+.|.+. .-.+.+++..|....+.+|++|.++++|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 4589999998888888887653 33333433321 1235688999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHhhhccCCC
Q 007106 413 DLIIHYELPNTSETFVHRTGRTGRA 437 (618)
Q Consensus 413 ~~VI~~~~p~~~~~~~Qr~GR~gR~ 437 (618)
+.|+.++.|.....|+|..||+-+.
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccc
Confidence 9999999999999999999999664
No 484
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=90.51 E-value=7.1 Score=39.72 Aligned_cols=138 Identities=18% Similarity=0.146 Sum_probs=74.2
Q ss_pred CChHHHHHHHHHHhCCCC------EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc-----HHHHHHH
Q 007106 121 KLFPIQKAVLEPAMQGRD------MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT-----RELAKQV 189 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~------~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt-----~~La~q~ 189 (618)
..+..|...+..++...+ +++.+.+|+|||.+. ..+++.. +...+++++. +.+.+++
T Consensus 9 ~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~-----r~~l~~~-------n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 9 PCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLV-----RQLLRKL-------NLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred cchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHH-----HHHHhhc-------CCcceeeehHHhccHHHHHHHH
Confidence 367889999888887654 489999999999743 2333311 2345666652 3333333
Q ss_pred HHHHHHhCCCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhc--CCCCCCccEEEEchhhhhccCC--cHHH
Q 007106 190 EKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN--ALNLSEVQFVVLDEADQMLSVG--FAED 265 (618)
Q Consensus 190 ~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~--~~~l~~~~~vViDEaH~~~~~~--~~~~ 265 (618)
...... .. ..+...+...+ +...++..+.+. ......--++|+|-++.+-|++ ..+.
T Consensus 77 L~~~~~-~d-------~dg~~~~~~~e-----------n~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~ 137 (438)
T KOG2543|consen 77 LNKSQL-AD-------KDGDKVEGDAE-----------NFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQC 137 (438)
T ss_pred HHHhcc-CC-------CchhhhhhHHH-----------HHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHH
Confidence 333320 00 00000000000 111122222221 1111234589999999988765 3344
Q ss_pred HHHHHHhCCCCCcEEEEEecCChH
Q 007106 266 VEVILERLPQNRQSMMFSATMPPW 289 (618)
Q Consensus 266 ~~~il~~l~~~~~~l~lSAT~~~~ 289 (618)
+..+...++.+.-.|.+|+++.+.
T Consensus 138 l~~L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 138 LFRLYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred HHHHHHHhCCCceEEEEeccccHH
Confidence 555555666666678899998774
No 485
>PRK07413 hypothetical protein; Validated
Probab=90.51 E-value=2.6 Score=43.20 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=38.2
Q ss_pred CCCccEEEEchhhhhccCCcH--HHHHHHHHhCCCCCcEEEEEec-CChHHHHHH
Q 007106 243 LSEVQFVVLDEADQMLSVGFA--EDVEVILERLPQNRQSMMFSAT-MPPWIRSLT 294 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~~~~--~~~~~il~~l~~~~~~l~lSAT-~~~~~~~~~ 294 (618)
-..+++||+||+-..++.++. ..+..+++..|....+|++--. +|+++.+++
T Consensus 303 ~g~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVLTGR~~ap~~lie~A 357 (382)
T PRK07413 303 SGLYKTIILDELNPTVDLELLPVEPIVQTLLRKPRDTEVIITGRCKNQPAYFDLA 357 (382)
T ss_pred CCCCCEEEEechHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHhC
Confidence 356899999999988777643 4666777777777777777666 777666654
No 486
>PRK12608 transcription termination factor Rho; Provisional
Probab=90.48 E-value=1.8 Score=44.34 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=26.3
Q ss_pred HHHHHHHHHHh---CCCCEEEEccCCChhHHHHHHHHHHHH
Q 007106 124 PIQKAVLEPAM---QGRDMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 124 ~~Q~~~i~~i~---~~~~~ll~~~tGsGKT~~~l~~~l~~i 161 (618)
++-.++|+.+. +++..+|.++.|+|||... ..++..+
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl-~~la~~i 157 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLL-QQIAAAV 157 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHH-HHHHHHH
Confidence 44556777765 6788999999999999743 3344444
No 487
>PTZ00110 helicase; Provisional
Probab=90.47 E-value=1.7 Score=47.76 Aligned_cols=71 Identities=18% Similarity=0.349 Sum_probs=54.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCccE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~ 248 (618)
..++||.|+++..++.+++.+... .+.+.+++++....++...+. ....||||| + +....+++.++++
T Consensus 377 ~~k~LIF~~t~~~a~~l~~~L~~~--g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaT-----d-v~~rGIDi~~v~~ 448 (545)
T PTZ00110 377 GDKILIFVETKKGADFLTKELRLD--GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIAT-----D-VASRGLDVKDVKY 448 (545)
T ss_pred CCeEEEEecChHHHHHHHHHHHHc--CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEc-----c-hhhcCCCcccCCE
Confidence 568999999999999999999754 467788899887666554433 247899999 3 3445677889999
Q ss_pred EEE
Q 007106 249 VVL 251 (618)
Q Consensus 249 vVi 251 (618)
||.
T Consensus 449 VI~ 451 (545)
T PTZ00110 449 VIN 451 (545)
T ss_pred EEE
Confidence 883
No 488
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=90.43 E-value=0.33 Score=49.26 Aligned_cols=16 Identities=19% Similarity=0.146 Sum_probs=13.9
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
-++|.+|.|+|||+.+
T Consensus 150 gllL~GPPGcGKTllA 165 (413)
T PLN00020 150 ILGIWGGKGQGKSFQC 165 (413)
T ss_pred EEEeeCCCCCCHHHHH
Confidence 4789999999999855
No 489
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=90.34 E-value=3.6 Score=45.26 Aligned_cols=65 Identities=25% Similarity=0.342 Sum_probs=41.0
Q ss_pred EEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCC
Q 007106 205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274 (618)
Q Consensus 205 ~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~ 274 (618)
..|+.....+++-.++ -.|=+-|+++.+-+..... .--++++||+|.|.....++-.-.+++.+.
T Consensus 382 sLGGvrDEAEIRGHRR--TYIGamPGrIiQ~mkka~~---~NPv~LLDEIDKm~ss~rGDPaSALLEVLD 446 (782)
T COG0466 382 SLGGVRDEAEIRGHRR--TYIGAMPGKIIQGMKKAGV---KNPVFLLDEIDKMGSSFRGDPASALLEVLD 446 (782)
T ss_pred ecCccccHHHhccccc--cccccCChHHHHHHHHhCC---cCCeEEeechhhccCCCCCChHHHHHhhcC
Confidence 3455554444443333 2444678999888876443 223699999999987766666666666664
No 490
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=90.32 E-value=0.62 Score=47.43 Aligned_cols=29 Identities=31% Similarity=0.416 Sum_probs=21.4
Q ss_pred HHhCCCCEEEEccCCChhHHHHHHHHHHHH
Q 007106 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 132 ~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i 161 (618)
++....+++++++||||||. ++-+++..+
T Consensus 156 ~v~~~~nili~G~tgSGKTT-ll~aL~~~i 184 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTT-FTNAALREI 184 (332)
T ss_pred HHHcCCcEEEECCCCCCHHH-HHHHHHhhC
Confidence 34567899999999999996 445555544
No 491
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=90.32 E-value=0.67 Score=44.41 Aligned_cols=44 Identities=16% Similarity=0.037 Sum_probs=26.1
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt 182 (618)
+.-+.|.+++|+|||..++..+...+.... . .+....++++..-
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~--~-~g~~~~v~yi~~e 62 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGE--L-GGLEGKVVYIDTE 62 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccc--c-CCCcceEEEEecC
Confidence 455899999999999866554444332200 0 0112567777654
No 492
>CHL00095 clpC Clp protease ATP binding subunit
Probab=90.25 E-value=1.7 Score=50.30 Aligned_cols=18 Identities=28% Similarity=0.226 Sum_probs=15.5
Q ss_pred CCEEEEccCCChhHHHHH
Q 007106 137 RDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l 154 (618)
.++|+.+|+|+|||.++-
T Consensus 201 ~n~lL~G~pGvGKTal~~ 218 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAE 218 (821)
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 579999999999998653
No 493
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=90.25 E-value=0.64 Score=43.36 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=21.0
Q ss_pred CccEEEEchhhhhccCCcH--HHHHHHHHhC---CC-CCcEEEEEecCC
Q 007106 245 EVQFVVLDEADQMLSVGFA--EDVEVILERL---PQ-NRQSMMFSATMP 287 (618)
Q Consensus 245 ~~~~vViDEaH~~~~~~~~--~~~~~il~~l---~~-~~~~l~lSAT~~ 287 (618)
.-.++||||||.+...... ......+..+ +. ...++++|-.+.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~ 127 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPS 127 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GG
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHH
Confidence 5578999999987654322 1223333433 32 345677766653
No 494
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=90.08 E-value=3.8 Score=39.13 Aligned_cols=17 Identities=35% Similarity=0.471 Sum_probs=15.1
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
+.+|..+|+|+|||+.+
T Consensus 206 KGvLmYGPPGTGKTlmA 222 (424)
T KOG0652|consen 206 KGVLMYGPPGTGKTLMA 222 (424)
T ss_pred CceEeeCCCCCcHHHHH
Confidence 56999999999999865
No 495
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.07 E-value=0.6 Score=51.79 Aligned_cols=130 Identities=17% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEE
Q 007106 127 KAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY 206 (618)
Q Consensus 127 ~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~ 206 (618)
++++..-.-.+.+|+.+|.|+|||.++...+-.. .+... ..|+..-+. .++.++.+......-++.
T Consensus 29 ~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L------------~c~~~-~~~~~~~Cg-~C~~C~~i~~g~h~D~~e 94 (620)
T PRK14948 29 KNALISNRIAPAYLFTGPRGTGKTSSARILAKSL------------NCLNS-DKPTPEPCG-KCELCRAIAAGNALDVIE 94 (620)
T ss_pred HHHHHcCCCCceEEEECCCCCChHHHHHHHHHHh------------cCCCc-CCCCCCCCc-ccHHHHHHhcCCCccEEE
Q ss_pred cCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEE
Q 007106 207 GGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 207 g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
-... ..+.|-....+...+....+ ....++|||||+|.|... -...+.+.++.-+....+|+.+
T Consensus 95 i~~~-----------~~~~vd~IReii~~a~~~p~-~~~~KViIIDEad~Lt~~-a~naLLK~LEePp~~tvfIL~t 158 (620)
T PRK14948 95 IDAA-----------SNTGVDNIRELIERAQFAPV-QARWKVYVIDECHMLSTA-AFNALLKTLEEPPPRVVFVLAT 158 (620)
T ss_pred Eecc-----------ccCCHHHHHHHHHHHhhChh-cCCceEEEEECccccCHH-HHHHHHHHHhcCCcCeEEEEEe
No 496
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=89.99 E-value=1.2 Score=49.70 Aligned_cols=82 Identities=17% Similarity=0.191 Sum_probs=0.0
Q ss_pred EEEEEeccCcchhHHHHHHHHHhcc-CCeEEEEecchhHHHHHHHHHHcc--CCccccccCCCHHHHHHHHHHHhcCCcc
Q 007106 319 SLYSIATSMYEKPSIIGQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKS--YNCEPLHGDISQSQRERTLSAFRDGRFN 395 (618)
Q Consensus 319 ~~~~~~~~~~~k~~~l~~ll~~~~~-~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~lhg~~~~~~r~~i~~~f~~g~~~ 395 (618)
.....-.+-..|.+++.+++.+... ++++||.+|.+.....+.+.+... .++..+|+++++.+|.....+..+|+.+
T Consensus 219 ~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~ 298 (730)
T COG1198 219 PFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEAR 298 (730)
T ss_pred ceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCce
Q ss_pred EEEEc
Q 007106 396 ILIAT 400 (618)
Q Consensus 396 vLVaT 400 (618)
|+|.|
T Consensus 299 vVIGt 303 (730)
T COG1198 299 VVIGT 303 (730)
T ss_pred EEEEe
No 497
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=89.95 E-value=0.82 Score=50.19 Aligned_cols=134 Identities=14% Similarity=0.159 Sum_probs=0.0
Q ss_pred HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchh
Q 007106 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212 (618)
Q Consensus 133 i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~ 212 (618)
+..++.+.+.+|+|||||. ++-++..+.. ...--|......+.+- .+++++....+.-....=..+..
T Consensus 358 i~~G~~vaIvG~SGsGKST--Ll~lL~g~~~---------p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~ 425 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKST--LLMLLTGLLD---------PLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVR 425 (529)
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHHhcCCC---------CCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHH
Q ss_pred hhhHHhhcCCCEEEEChHHHHHHHHhcCCC-----------------------------------CCCccEEEEchhhhh
Q 007106 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALN-----------------------------------LSEVQFVVLDEADQM 257 (618)
Q Consensus 213 ~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~-----------------------------------l~~~~~vViDEaH~~ 257 (618)
+....-...+ |.+.+.+.++.-.+. +++-+++|+||+-.-
T Consensus 426 eNI~~g~~~~-----~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSa 500 (529)
T TIGR02868 426 DNLRLGRPDA-----TDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEH 500 (529)
T ss_pred HHHhccCCCC-----CHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Q ss_pred ccCCcHHHHHHHHHhCCCCCcEEEEE
Q 007106 258 LSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 258 ~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
+|......+.+.+..+.+++-+|+.|
T Consensus 501 LD~~te~~I~~~l~~~~~~~TvIiIt 526 (529)
T TIGR02868 501 LDAGTESELLEDLLAALSGKTVVVIT 526 (529)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEe
No 498
>PRK09354 recA recombinase A; Provisional
Probab=89.86 E-value=0.61 Score=47.43 Aligned_cols=87 Identities=15% Similarity=0.127 Sum_probs=0.0
Q ss_pred HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchh
Q 007106 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212 (618)
Q Consensus 133 i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~ 212 (618)
+-.+.-+.|.+|+|||||..++..+...... +..++++..-..+-...++.+.--..
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~~~---------G~~~~yId~E~s~~~~~a~~lGvdld-------------- 113 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQKA---------GGTAAFIDAEHALDPVYAKKLGVDID-------------- 113 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHc---------CCcEEEECCccchHHHHHHHcCCCHH--------------
Q ss_pred hhhHHhhcCCCEEEEChHHHHHHHHh--cCCCCCCccEEEEc
Q 007106 213 HQMRALDYGVDAVVGTPGRVIDLIKR--NALNLSEVQFVVLD 252 (618)
Q Consensus 213 ~~~~~l~~~~~Ilv~T~~~l~~~l~~--~~~~l~~~~~vViD 252 (618)
++++..|....+.+.. ..+.-..+++||||
T Consensus 114 ----------~lli~qp~~~Eq~l~i~~~li~s~~~~lIVID 145 (349)
T PRK09354 114 ----------NLLVSQPDTGEQALEIADTLVRSGAVDLIVVD 145 (349)
T ss_pred ----------HeEEecCCCHHHHHHHHHHHhhcCCCCEEEEe
No 499
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=89.81 E-value=2 Score=46.12 Aligned_cols=80 Identities=23% Similarity=0.392 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhhc----CCCEEEEChHHH
Q 007106 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY----GVDAVVGTPGRV 232 (618)
Q Consensus 157 ~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~----~~~Ilv~T~~~l 232 (618)
++..++. .....++||.|+++..++.+++.|.+. .+.+..+++..+..++...+.. ..+|||||
T Consensus 235 ~l~~l~~------~~~~~~~lVF~~t~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT---- 302 (456)
T PRK10590 235 LLSQMIG------KGNWQQVLVFTRTKHGANHLAEQLNKD--GIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT---- 302 (456)
T ss_pred HHHHHHH------cCCCCcEEEEcCcHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc----
Q ss_pred HHHHHhcCCCCCCccEEE
Q 007106 233 IDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 233 ~~~l~~~~~~l~~~~~vV 250 (618)
.+....+++.++++||
T Consensus 303 --dv~~rGiDip~v~~VI 318 (456)
T PRK10590 303 --DIAARGLDIEELPHVV 318 (456)
T ss_pred --cHHhcCCCcccCCEEE
No 500
>COG4371 Predicted membrane protein [Function unknown]
Probab=89.70 E-value=0.76 Score=42.93 Aligned_cols=53 Identities=26% Similarity=0.494 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCC
Q 007106 538 QGGGSSSGGFGSNANRSGKFGGPGFSRSGGWGESTKSDRSSAFGDT----GSRQSGRFGD 593 (618)
Q Consensus 538 ~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 593 (618)
.||+-++|.++...+..++..++ +..+|+|+ +++.++++||.. +++++|+|+|
T Consensus 49 SGGriGGgSfraps~~sr~YS~~-gpsGGgY~--gg~Y~GGGfgfPfiip~~G~GGGfgG 105 (334)
T COG4371 49 SGGRIGGGSFRAPSGYSRGYSGG-GPSGGGYS--GGGYSGGGFGFPFIIPGGGGGGGFGG 105 (334)
T ss_pred hCCCccCCCCCCCCCCCCCcCCC-CCCCCCCC--CCCCCCCCcCcCeEeccCCcCCcccc
Done!