Query 007106
Match_columns 618
No_of_seqs 491 out of 3152
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 17:18:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007106.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007106hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 3.3E-57 1.1E-61 480.4 45.3 375 95-474 52-432 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 3.1E-54 1.1E-58 457.1 42.0 377 95-473 11-406 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 1.8E-53 6E-58 450.2 43.1 366 97-471 35-404 (410)
4 1s2m_A Putative ATP-dependent 100.0 1.2E-52 4.2E-57 442.3 42.7 367 96-472 18-387 (400)
5 1xti_A Probable ATP-dependent 100.0 9.7E-52 3.3E-56 434.1 42.7 366 99-472 8-380 (391)
6 3eiq_A Eukaryotic initiation f 100.0 2.9E-52 9.9E-57 441.5 38.0 370 95-472 36-409 (414)
7 1hv8_A Putative ATP-dependent 100.0 4.6E-51 1.6E-55 424.9 40.9 357 98-470 5-365 (367)
8 3sqw_A ATP-dependent RNA helic 100.0 4E-51 1.4E-55 449.9 39.1 370 97-468 15-416 (579)
9 3fht_A ATP-dependent RNA helic 100.0 3.5E-50 1.2E-54 425.2 42.9 366 96-473 22-403 (412)
10 3i5x_A ATP-dependent RNA helic 100.0 6.8E-51 2.3E-55 447.9 38.4 370 97-468 66-467 (563)
11 3pey_A ATP-dependent RNA helic 100.0 1.3E-49 4.3E-54 418.4 42.4 360 98-470 4-378 (395)
12 1fuu_A Yeast initiation factor 100.0 1.1E-51 3.7E-56 434.1 23.2 365 97-471 19-387 (394)
13 2z0m_A 337AA long hypothetical 100.0 9.1E-49 3.1E-53 402.7 38.8 333 106-463 1-335 (337)
14 3fmp_B ATP-dependent RNA helic 100.0 2.3E-50 7.8E-55 434.7 20.2 364 97-472 90-469 (479)
15 2v1x_A ATP-dependent DNA helic 100.0 6.3E-48 2.2E-52 420.7 33.6 338 102-458 24-382 (591)
16 1oyw_A RECQ helicase, ATP-depe 100.0 7.9E-47 2.7E-51 408.2 35.1 338 99-459 2-352 (523)
17 3fho_A ATP-dependent RNA helic 100.0 4.6E-48 1.6E-52 418.0 21.7 366 98-475 118-496 (508)
18 3oiy_A Reverse gyrase helicase 100.0 1.3E-45 4.3E-50 390.3 29.4 326 108-463 8-376 (414)
19 1gm5_A RECG; helicase, replica 100.0 1.2E-46 4.3E-51 418.6 20.0 378 42-453 297-700 (780)
20 2zj8_A DNA helicase, putative 100.0 6.1E-44 2.1E-48 402.5 33.1 347 100-468 2-403 (720)
21 2va8_A SSO2462, SKI2-type heli 100.0 3.3E-43 1.1E-47 396.7 36.6 339 98-452 7-410 (715)
22 2p6r_A Afuhel308 helicase; pro 100.0 3.9E-44 1.3E-48 403.0 27.8 337 100-452 2-390 (702)
23 4a2p_A RIG-I, retinoic acid in 100.0 2.9E-43 1E-47 387.0 29.5 330 118-453 4-511 (556)
24 2ykg_A Probable ATP-dependent 100.0 3.7E-44 1.3E-48 404.4 22.5 342 111-458 3-524 (696)
25 3l9o_A ATP-dependent RNA helic 100.0 3.7E-43 1.3E-47 406.5 27.3 329 100-450 163-597 (1108)
26 3tbk_A RIG-I helicase domain; 100.0 4.5E-43 1.5E-47 385.4 24.2 331 120-458 3-515 (555)
27 4a2q_A RIG-I, retinoic acid in 100.0 1.1E-41 3.8E-46 387.8 30.7 331 117-453 244-752 (797)
28 1wp9_A ATP-dependent RNA helic 100.0 7.8E-41 2.7E-45 361.3 35.0 322 121-453 9-478 (494)
29 2xgj_A ATP-dependent RNA helic 100.0 6.5E-41 2.2E-45 384.5 35.5 316 120-457 85-507 (1010)
30 4ddu_A Reverse gyrase; topoiso 100.0 6.8E-41 2.3E-45 387.4 31.6 324 109-463 66-503 (1104)
31 2eyq_A TRCF, transcription-rep 100.0 2.8E-40 9.6E-45 384.8 35.0 322 103-450 585-922 (1151)
32 4gl2_A Interferon-induced heli 100.0 2.6E-41 8.9E-46 381.3 23.1 314 120-438 6-509 (699)
33 4a2w_A RIG-I, retinoic acid in 100.0 8.1E-41 2.8E-45 384.3 26.9 331 116-452 243-751 (936)
34 1gku_B Reverse gyrase, TOP-RG; 100.0 9.9E-41 3.4E-45 386.6 23.6 324 110-464 46-468 (1054)
35 4a4z_A Antiviral helicase SKI2 100.0 5.1E-40 1.7E-44 377.1 27.6 311 119-448 37-490 (997)
36 1tf5_A Preprotein translocase 100.0 4.4E-40 1.5E-44 358.2 24.3 320 116-451 79-546 (844)
37 4f92_B U5 small nuclear ribonu 100.0 9.5E-38 3.3E-42 373.3 35.7 338 106-458 911-1316(1724)
38 2oca_A DAR protein, ATP-depend 100.0 2.6E-38 8.8E-43 343.5 27.0 310 120-448 112-453 (510)
39 2fsf_A Preprotein translocase 100.0 1.3E-38 4.6E-43 345.5 22.7 318 117-452 71-585 (853)
40 2fwr_A DNA repair protein RAD2 100.0 1.4E-38 4.7E-43 342.2 22.0 291 120-446 92-448 (472)
41 2whx_A Serine protease/ntpase/ 100.0 2.4E-39 8E-44 354.1 10.9 313 104-462 155-493 (618)
42 4f92_B U5 small nuclear ribonu 100.0 2.2E-37 7.5E-42 370.1 27.3 333 118-458 76-481 (1724)
43 1nkt_A Preprotein translocase 100.0 1.3E-37 4.3E-42 338.0 22.6 320 117-452 108-619 (922)
44 1yks_A Genome polyprotein [con 100.0 2.4E-39 8.3E-44 342.4 5.3 286 132-462 4-314 (440)
45 3o8b_A HCV NS3 protease/helica 100.0 3.5E-38 1.2E-42 341.1 13.9 278 120-453 216-517 (666)
46 2jlq_A Serine protease subunit 100.0 1.2E-37 4.2E-42 330.9 17.5 286 118-449 1-310 (451)
47 2xau_A PRE-mRNA-splicing facto 100.0 5.7E-37 1.9E-41 343.6 23.4 334 98-452 71-445 (773)
48 2wv9_A Flavivirin protease NS2 100.0 2.4E-38 8.4E-43 348.0 10.7 296 121-461 215-547 (673)
49 3h1t_A Type I site-specific re 100.0 7E-36 2.4E-40 329.6 21.5 315 121-449 178-558 (590)
50 1z63_A Helicase of the SNF2/RA 100.0 1.9E-34 6.6E-39 312.2 28.5 329 120-468 36-469 (500)
51 3dmq_A RNA polymerase-associat 100.0 3.4E-35 1.2E-39 338.0 23.1 333 120-462 152-625 (968)
52 2v6i_A RNA helicase; membrane, 100.0 5.7E-35 2E-39 308.3 21.9 268 136-448 2-288 (431)
53 2z83_A Helicase/nucleoside tri 100.0 1.5E-35 5.1E-40 315.3 15.5 275 127-450 12-313 (459)
54 3fe2_A Probable ATP-dependent 100.0 2.2E-33 7.5E-38 273.6 25.8 214 93-307 23-238 (242)
55 3iuy_A Probable ATP-dependent 100.0 1.6E-33 5.4E-38 272.2 24.3 212 94-305 14-227 (228)
56 1vec_A ATP-dependent RNA helic 100.0 1.8E-32 6.2E-37 260.4 25.3 200 99-304 3-205 (206)
57 2gxq_A Heat resistant RNA depe 100.0 1.5E-32 5E-37 261.3 24.5 204 100-306 2-205 (207)
58 1q0u_A Bstdead; DEAD protein, 100.0 7.5E-33 2.6E-37 265.6 21.0 202 99-306 4-211 (219)
59 3rc3_A ATP-dependent RNA helic 100.0 9.3E-33 3.2E-37 302.6 24.4 281 132-458 151-452 (677)
60 3ber_A Probable ATP-dependent 100.0 4.5E-32 1.6E-36 265.0 25.7 204 97-306 41-247 (249)
61 2oxc_A Probable ATP-dependent 100.0 2.9E-32 1E-36 263.5 23.7 208 92-306 17-228 (230)
62 2pl3_A Probable ATP-dependent 100.0 9.6E-32 3.3E-36 261.1 26.4 209 95-306 21-232 (236)
63 3bor_A Human initiation factor 100.0 3E-32 1E-36 264.6 22.6 205 96-306 27-234 (237)
64 1z3i_X Similar to RAD54-like; 100.0 1.8E-31 6.3E-36 295.3 31.9 320 120-447 54-523 (644)
65 3mwy_W Chromo domain-containin 100.0 4.2E-32 1.4E-36 307.9 27.5 316 120-447 235-679 (800)
66 1qde_A EIF4A, translation init 100.0 1.4E-31 4.7E-36 257.9 24.1 203 97-306 12-216 (224)
67 3ly5_A ATP-dependent RNA helic 100.0 1.9E-31 6.4E-36 262.7 24.1 204 98-303 51-259 (262)
68 3fmo_B ATP-dependent RNA helic 100.0 1.4E-31 4.9E-36 268.3 22.9 201 97-306 90-297 (300)
69 1wrb_A DJVLGB; RNA helicase, D 100.0 9.9E-32 3.4E-36 263.9 20.1 210 97-306 21-239 (253)
70 1t6n_A Probable ATP-dependent 100.0 2.9E-31 9.9E-36 254.9 22.6 202 98-305 13-219 (220)
71 3dkp_A Probable ATP-dependent 100.0 2.5E-30 8.5E-35 252.6 21.3 209 94-307 20-241 (245)
72 3jux_A Protein translocase sub 100.0 3.7E-28 1.3E-32 258.3 34.8 314 121-452 75-589 (822)
73 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 2.2E-29 7.7E-34 287.1 25.0 303 121-439 271-694 (1038)
74 1c4o_A DNA nucleotide excision 99.9 1.3E-25 4.4E-30 248.2 32.9 169 275-453 379-553 (664)
75 2d7d_A Uvrabc system protein B 99.9 1.4E-25 4.7E-30 247.8 28.0 169 275-453 385-559 (661)
76 2ipc_A Preprotein translocase 99.9 4.3E-24 1.5E-28 231.3 32.5 128 117-258 76-215 (997)
77 2hjv_A ATP-dependent RNA helic 99.9 1.1E-24 3.9E-29 198.0 20.2 153 316-469 8-161 (163)
78 2p6n_A ATP-dependent RNA helic 99.9 8.8E-25 3E-29 203.5 16.0 175 295-473 9-185 (191)
79 2jgn_A DBX, DDX3, ATP-dependen 99.9 6.1E-25 2.1E-29 203.7 14.8 159 315-473 17-176 (185)
80 1t5i_A C_terminal domain of A 99.9 1.6E-24 5.5E-29 198.5 17.1 156 316-472 4-161 (172)
81 2rb4_A ATP-dependent RNA helic 99.9 4E-24 1.4E-28 196.8 18.4 155 316-471 6-168 (175)
82 1fuk_A Eukaryotic initiation f 99.9 3.1E-24 1.1E-28 195.5 17.0 153 318-471 4-158 (165)
83 3eaq_A Heat resistant RNA depe 99.9 1.3E-23 4.4E-28 199.4 19.2 150 320-470 8-158 (212)
84 3i32_A Heat resistant RNA depe 99.9 4.2E-23 1.4E-27 205.0 18.5 152 318-470 3-155 (300)
85 3b6e_A Interferon-induced heli 99.9 3.3E-23 1.1E-27 197.9 14.4 166 117-285 29-216 (216)
86 2vl7_A XPD; helicase, unknown 99.9 2E-21 6.8E-26 210.5 24.0 124 121-258 7-188 (540)
87 2yjt_D ATP-dependent RNA helic 99.8 7E-24 2.4E-28 194.1 0.0 140 328-468 15-155 (170)
88 3llm_A ATP-dependent RNA helic 99.9 1.7E-21 5.8E-26 188.4 13.9 181 107-301 47-230 (235)
89 1rif_A DAR protein, DNA helica 99.8 1.7E-21 5.8E-26 194.0 11.3 153 120-290 112-266 (282)
90 3crv_A XPD/RAD3 related DNA he 99.8 7.8E-19 2.7E-23 190.9 30.6 127 121-259 3-187 (551)
91 2fz4_A DNA repair protein RAD2 99.8 5.8E-19 2E-23 170.3 16.7 139 120-289 92-231 (237)
92 4a15_A XPD helicase, ATP-depen 99.7 1.1E-16 3.8E-21 175.2 23.2 104 344-450 448-584 (620)
93 1z5z_A Helicase of the SNF2/RA 99.7 1.2E-17 4.1E-22 163.8 11.2 121 326-446 93-218 (271)
94 1w36_D RECD, exodeoxyribonucle 98.8 1.8E-08 6.3E-13 110.1 11.0 145 122-285 150-298 (608)
95 4b3f_X DNA-binding protein smu 98.6 7.8E-07 2.7E-11 98.3 17.1 67 121-196 189-256 (646)
96 3upu_A ATP-dependent DNA helic 98.5 1.7E-06 6E-11 91.4 17.2 135 117-283 21-162 (459)
97 3e1s_A Exodeoxyribonuclease V, 98.4 1.4E-06 4.7E-11 94.2 11.2 122 120-283 188-313 (574)
98 2gk6_A Regulator of nonsense t 98.2 1.2E-05 4.2E-10 88.2 15.0 70 119-196 178-247 (624)
99 2xzl_A ATP-dependent helicase 98.2 1.8E-05 6.2E-10 88.8 16.1 69 120-196 359-427 (802)
100 3lfu_A DNA helicase II; SF1 he 98.1 0.00011 3.7E-09 81.4 19.9 71 120-197 8-78 (647)
101 2wjy_A Regulator of nonsense t 98.1 3E-05 1E-09 86.9 14.2 69 120-196 355-423 (800)
102 3hgt_A HDA1 complex subunit 3; 97.8 0.00011 3.9E-09 71.9 11.8 119 327-450 107-237 (328)
103 2o0j_A Terminase, DNA packagin 97.6 0.00021 7.2E-09 72.6 9.7 70 120-196 162-231 (385)
104 3cpe_A Terminase, DNA packagin 97.3 0.001 3.5E-08 72.4 11.4 145 121-288 163-315 (592)
105 3vkw_A Replicase large subunit 97.2 0.0012 4E-08 68.0 9.7 106 139-285 164-269 (446)
106 3ec2_A DNA replication protein 97.1 0.0022 7.6E-08 57.9 9.5 18 136-153 38-55 (180)
107 2orw_A Thymidine kinase; TMTK, 97.0 0.0024 8.1E-08 58.0 8.8 39 136-183 3-41 (184)
108 2b8t_A Thymidine kinase; deoxy 96.9 0.00049 1.7E-08 64.4 4.0 89 137-257 13-101 (223)
109 1xx6_A Thymidine kinase; NESG, 96.9 0.002 6.7E-08 58.8 7.1 38 137-183 9-46 (191)
110 2j9r_A Thymidine kinase; TK1, 96.8 0.0022 7.5E-08 59.0 7.1 37 139-184 31-67 (214)
111 2zpa_A Uncharacterized protein 96.6 0.0051 1.7E-07 66.5 8.9 113 121-287 175-289 (671)
112 1pjr_A PCRA; DNA repair, DNA r 96.5 0.0065 2.2E-07 67.8 9.6 110 120-256 10-121 (724)
113 3te6_A Regulatory protein SIR3 96.4 0.0088 3E-07 59.0 9.1 25 137-162 46-70 (318)
114 1l8q_A Chromosomal replication 96.4 0.019 6.6E-07 57.1 11.4 18 136-153 37-54 (324)
115 2orv_A Thymidine kinase; TP4A 96.3 0.008 2.7E-07 55.9 7.3 38 137-183 20-57 (234)
116 3h4m_A Proteasome-activating n 96.3 0.017 5.8E-07 56.3 10.1 55 97-153 12-68 (285)
117 2chg_A Replication factor C sm 96.3 0.035 1.2E-06 51.3 11.9 40 244-284 101-140 (226)
118 1w4r_A Thymidine kinase; type 96.1 0.0033 1.1E-07 56.9 3.5 37 137-182 21-57 (195)
119 3e2i_A Thymidine kinase; Zn-bi 96.1 0.012 4.2E-07 53.9 7.3 39 137-184 29-67 (219)
120 1g5t_A COB(I)alamin adenosyltr 96.0 0.023 7.9E-07 51.4 8.7 140 137-294 29-171 (196)
121 2v1u_A Cell division control p 96.0 0.054 1.8E-06 55.1 12.9 18 136-153 44-61 (387)
122 2kjq_A DNAA-related protein; s 96.0 0.0021 7.1E-08 56.1 1.6 19 135-153 35-53 (149)
123 2z4s_A Chromosomal replication 96.0 0.031 1.1E-06 58.1 10.8 43 245-287 194-238 (440)
124 2w58_A DNAI, primosome compone 95.9 0.033 1.1E-06 51.0 9.7 17 137-153 55-71 (202)
125 4b4t_J 26S protease regulatory 95.8 0.072 2.5E-06 54.0 12.4 56 95-153 141-199 (405)
126 1uaa_A REP helicase, protein ( 95.8 0.012 4.3E-07 65.0 7.4 71 121-198 2-72 (673)
127 1a5t_A Delta prime, HOLB; zinc 95.7 0.0074 2.5E-07 60.5 4.8 33 122-154 3-42 (334)
128 1d2n_A N-ethylmaleimide-sensit 95.6 0.12 4E-06 49.8 12.6 17 137-153 65-81 (272)
129 4b4t_H 26S protease regulatory 95.6 0.025 8.5E-07 58.3 7.9 57 95-153 202-260 (467)
130 3kl4_A SRP54, signal recogniti 95.5 0.086 2.9E-06 54.3 11.5 55 243-297 177-234 (433)
131 2p65_A Hypothetical protein PF 95.4 0.051 1.7E-06 48.6 8.8 18 136-153 43-60 (187)
132 4b4t_M 26S protease regulatory 95.3 0.065 2.2E-06 55.1 10.2 56 95-153 174-232 (434)
133 3bos_A Putative DNA replicatio 95.3 0.02 6.7E-07 54.0 6.0 19 135-153 51-69 (242)
134 1jbk_A CLPB protein; beta barr 95.3 0.36 1.2E-05 43.0 14.3 17 137-153 44-60 (195)
135 3eie_A Vacuolar protein sortin 95.2 0.038 1.3E-06 54.9 7.9 51 97-153 13-68 (322)
136 3n70_A Transport activator; si 95.2 0.071 2.4E-06 45.9 8.6 21 133-153 21-41 (145)
137 2qby_B CDC6 homolog 3, cell di 95.0 0.094 3.2E-06 53.3 10.5 17 137-153 46-62 (384)
138 3u4q_A ATP-dependent helicase/ 95.0 0.032 1.1E-06 66.0 7.5 124 121-255 10-137 (1232)
139 3cf0_A Transitional endoplasmi 95.0 0.068 2.3E-06 52.5 8.8 54 97-153 10-66 (301)
140 2qgz_A Helicase loader, putati 94.9 0.072 2.5E-06 52.5 8.8 19 136-154 152-170 (308)
141 3co5_A Putative two-component 94.9 0.0087 3E-07 51.7 1.7 21 133-153 24-44 (143)
142 4b4t_K 26S protease regulatory 94.8 0.19 6.6E-06 51.6 11.8 56 95-153 165-223 (428)
143 3u61_B DNA polymerase accessor 94.7 0.061 2.1E-06 53.4 7.8 40 244-283 104-143 (324)
144 2qby_A CDC6 homolog 1, cell di 94.7 0.13 4.6E-06 52.0 10.4 18 136-153 45-62 (386)
145 4b4t_I 26S protease regulatory 94.6 0.18 6E-06 51.5 10.8 56 95-153 175-233 (437)
146 3vfd_A Spastin; ATPase, microt 94.6 0.11 3.7E-06 53.1 9.6 55 96-153 109-165 (389)
147 2qz4_A Paraplegin; AAA+, SPG7, 94.5 0.094 3.2E-06 50.1 8.4 18 136-153 39-56 (262)
148 3pfi_A Holliday junction ATP-d 94.5 0.3 1E-05 48.6 12.5 17 137-153 56-72 (338)
149 4b4t_L 26S protease subunit RP 94.5 0.15 5E-06 52.6 10.0 55 96-153 175-232 (437)
150 1sxj_D Activator 1 41 kDa subu 94.5 0.22 7.5E-06 49.8 11.4 40 244-284 132-171 (353)
151 1fnn_A CDC6P, cell division co 94.4 0.054 1.9E-06 55.2 6.8 16 138-153 46-61 (389)
152 3syl_A Protein CBBX; photosynt 94.4 0.1 3.5E-06 51.3 8.5 17 137-153 68-84 (309)
153 1gm5_A RECG; helicase, replica 94.3 0.17 5.7E-06 56.5 10.7 97 326-422 398-501 (780)
154 1iqp_A RFCS; clamp loader, ext 94.3 0.13 4.4E-06 50.9 9.1 39 244-283 109-147 (327)
155 2q6t_A DNAB replication FORK h 94.2 0.058 2E-06 56.2 6.6 113 136-259 200-324 (444)
156 1xwi_A SKD1 protein; VPS4B, AA 94.2 0.27 9.3E-06 48.6 11.2 51 97-153 7-62 (322)
157 2dr3_A UPF0273 protein PH0284; 94.1 0.22 7.7E-06 46.8 10.0 51 135-195 22-72 (247)
158 3hu3_A Transitional endoplasmi 94.1 0.16 5.4E-06 53.5 9.5 43 246-288 298-350 (489)
159 2w0m_A SSO2452; RECA, SSPF, un 94.0 0.2 6.9E-06 46.6 9.4 20 135-154 22-41 (235)
160 2p6n_A ATP-dependent RNA helic 93.9 0.48 1.7E-05 42.8 11.4 71 173-251 54-128 (191)
161 4a1f_A DNAB helicase, replicat 93.9 0.016 5.4E-07 57.7 1.3 49 135-193 45-93 (338)
162 3cf2_A TER ATPase, transitiona 93.9 0.095 3.2E-06 58.3 7.6 57 96-153 471-528 (806)
163 2r6a_A DNAB helicase, replicat 93.8 0.099 3.4E-06 54.6 7.4 39 135-181 202-240 (454)
164 3pvs_A Replication-associated 93.5 0.11 3.8E-06 54.0 7.0 17 137-153 51-67 (447)
165 2qp9_X Vacuolar protein sortin 93.5 0.18 6.1E-06 50.7 8.4 17 137-153 85-101 (355)
166 1njg_A DNA polymerase III subu 93.4 0.29 9.8E-06 45.6 9.3 16 138-153 47-62 (250)
167 1sxj_E Activator 1 40 kDa subu 93.4 0.71 2.4E-05 46.1 12.7 43 244-287 133-175 (354)
168 3hjh_A Transcription-repair-co 93.3 0.35 1.2E-05 50.6 10.5 85 136-234 14-115 (483)
169 3dm5_A SRP54, signal recogniti 93.2 0.39 1.3E-05 49.4 10.4 54 245-298 182-236 (443)
170 2hjv_A ATP-dependent RNA helic 93.1 0.34 1.2E-05 42.4 8.6 72 173-252 35-110 (163)
171 2zan_A Vacuolar protein sortin 92.9 0.13 4.5E-06 53.5 6.5 55 96-153 128-184 (444)
172 3bh0_A DNAB-like replicative h 92.8 0.17 5.9E-06 49.9 6.9 51 134-194 66-116 (315)
173 1sxj_C Activator 1 40 kDa subu 92.7 0.49 1.7E-05 47.1 10.3 39 244-283 109-147 (340)
174 1hqc_A RUVB; extended AAA-ATPa 92.7 0.74 2.5E-05 45.3 11.5 17 137-153 39-55 (324)
175 1fuk_A Eukaryotic initiation f 92.6 0.71 2.4E-05 40.4 10.1 72 173-252 30-105 (165)
176 3d8b_A Fidgetin-like protein 1 92.6 0.45 1.5E-05 47.8 9.9 18 136-153 117-134 (357)
177 1lv7_A FTSH; alpha/beta domain 92.6 0.94 3.2E-05 42.9 11.7 53 98-153 8-62 (257)
178 1sxj_B Activator 1 37 kDa subu 92.4 0.25 8.4E-06 48.7 7.5 38 245-283 107-144 (323)
179 2rb4_A ATP-dependent RNA helic 92.4 0.48 1.7E-05 42.0 8.8 71 173-251 34-108 (175)
180 3uk6_A RUVB-like 2; hexameric 92.3 0.75 2.6E-05 46.2 11.1 17 137-153 71-87 (368)
181 1sxj_A Activator 1 95 kDa subu 92.1 0.27 9.2E-06 52.2 7.8 41 244-286 147-189 (516)
182 3oiy_A Reverse gyrase helicase 92.1 0.36 1.2E-05 49.5 8.6 79 341-420 61-148 (414)
183 3bgw_A DNAB-like replicative h 92.0 0.11 3.9E-06 53.9 4.5 49 135-193 196-244 (444)
184 3b9p_A CG5977-PA, isoform A; A 91.9 0.54 1.8E-05 45.7 9.2 54 97-153 16-71 (297)
185 1w5s_A Origin recognition comp 91.9 0.22 7.6E-06 51.0 6.7 17 137-153 51-69 (412)
186 2fna_A Conserved hypothetical 91.8 3.6 0.00012 40.6 15.6 52 228-283 123-177 (357)
187 3eaq_A Heat resistant RNA depe 91.7 0.52 1.8E-05 43.3 8.3 71 173-251 31-105 (212)
188 2chq_A Replication factor C sm 91.6 0.34 1.2E-05 47.5 7.5 16 138-153 40-55 (319)
189 2gno_A DNA polymerase III, gam 91.6 0.65 2.2E-05 45.4 9.3 40 243-283 80-119 (305)
190 3i5x_A ATP-dependent RNA helic 91.4 1.3 4.5E-05 47.4 12.4 75 173-253 339-418 (563)
191 2l8b_A Protein TRAI, DNA helic 91.3 0.24 8.2E-06 43.8 5.2 121 122-285 35-158 (189)
192 2jgn_A DBX, DDX3, ATP-dependen 91.3 0.51 1.7E-05 42.3 7.7 71 173-251 46-120 (185)
193 1n0w_A DNA repair protein RAD5 91.3 0.44 1.5E-05 44.6 7.6 22 135-156 23-44 (243)
194 1t5i_A C_terminal domain of A 91.3 0.73 2.5E-05 40.7 8.6 71 173-251 31-105 (172)
195 2ehv_A Hypothetical protein PH 91.2 0.19 6.6E-06 47.4 5.0 22 133-154 27-48 (251)
196 3t15_A Ribulose bisphosphate c 90.8 0.39 1.3E-05 46.8 6.8 17 137-153 37-53 (293)
197 2cvh_A DNA repair and recombin 90.8 0.63 2.2E-05 42.7 8.0 22 135-156 19-40 (220)
198 2ce7_A Cell division protein F 90.7 0.61 2.1E-05 48.6 8.5 52 97-153 11-66 (476)
199 1cr0_A DNA primase/helicase; R 90.6 0.16 5.4E-06 49.6 3.7 22 133-154 32-53 (296)
200 3sqw_A ATP-dependent RNA helic 90.5 1.8 6.1E-05 46.6 12.4 75 173-253 288-367 (579)
201 3cmu_A Protein RECA, recombina 90.3 0.51 1.7E-05 57.5 8.3 44 130-182 1415-1464(2050)
202 1jr3_A DNA polymerase III subu 90.3 0.22 7.5E-06 50.3 4.6 16 138-153 40-55 (373)
203 1xp8_A RECA protein, recombina 90.1 0.52 1.8E-05 47.4 7.1 38 136-182 74-111 (366)
204 2zts_A Putative uncharacterize 90.0 0.3 1E-05 46.0 5.1 52 136-196 30-81 (251)
205 1ixz_A ATP-dependent metallopr 89.9 2 6.9E-05 40.4 10.9 54 97-153 11-66 (254)
206 2eyq_A TRCF, transcription-rep 89.8 1 3.4E-05 52.8 10.1 99 323-421 630-735 (1151)
207 1nlf_A Regulatory protein REPA 89.4 0.93 3.2E-05 43.6 8.2 26 132-157 26-51 (279)
208 2zr9_A Protein RECA, recombina 89.1 0.82 2.8E-05 45.6 7.7 38 135-181 60-97 (349)
209 3i32_A Heat resistant RNA depe 88.5 0.98 3.4E-05 44.0 7.6 71 173-251 28-102 (300)
210 2i4i_A ATP-dependent RNA helic 88.5 1.8 6.1E-05 44.1 10.1 72 172-251 275-350 (417)
211 3pxi_A Negative regulator of g 88.2 1.4 4.6E-05 49.3 9.5 16 138-153 523-538 (758)
212 1ls1_A Signal recognition part 87.5 3 0.0001 40.4 10.4 45 244-288 179-224 (295)
213 3ney_A 55 kDa erythrocyte memb 87.3 2.8 9.7E-05 37.8 9.4 18 135-152 18-35 (197)
214 3cf2_A TER ATPase, transitiona 87.2 0.18 6.2E-06 56.0 1.6 41 245-285 297-347 (806)
215 4ddu_A Reverse gyrase; topoiso 86.7 1.2 4.2E-05 51.7 8.2 80 340-420 117-205 (1104)
216 3hr8_A Protein RECA; alpha and 86.6 0.53 1.8E-05 47.0 4.5 39 136-183 61-99 (356)
217 2px0_A Flagellar biosynthesis 86.5 3.5 0.00012 40.0 10.2 19 136-154 105-123 (296)
218 2d7d_A Uvrabc system protein B 86.4 2.2 7.5E-05 46.6 9.6 77 173-257 445-525 (661)
219 3io5_A Recombination and repai 85.8 0.82 2.8E-05 44.6 5.1 41 138-185 30-70 (333)
220 3m6a_A ATP-dependent protease 85.5 0.77 2.6E-05 49.0 5.4 19 135-153 107-125 (543)
221 2qen_A Walker-type ATPase; unk 85.5 1.7 5.6E-05 43.0 7.6 17 136-152 31-47 (350)
222 2z43_A DNA repair and recombin 85.3 2.1 7.1E-05 42.2 8.1 22 136-157 107-128 (324)
223 1u94_A RECA protein, recombina 85.2 1.4 4.8E-05 44.0 6.8 38 135-181 62-99 (356)
224 1yks_A Genome polyprotein [con 84.9 1.2 4.2E-05 46.0 6.5 68 173-250 177-245 (440)
225 3fht_A ATP-dependent RNA helic 84.6 2.2 7.6E-05 43.2 8.3 71 173-251 266-340 (412)
226 1t6n_A Probable ATP-dependent 84.5 4.7 0.00016 36.7 9.8 74 345-421 83-168 (220)
227 3pey_A ATP-dependent RNA helic 83.9 2.5 8.4E-05 42.5 8.2 75 173-255 243-321 (395)
228 1qvr_A CLPB protein; coiled co 83.8 2.1 7.3E-05 48.4 8.3 17 137-153 192-208 (854)
229 1vma_A Cell division protein F 83.8 9.6 0.00033 37.0 12.0 17 138-154 106-122 (306)
230 1hv8_A Putative ATP-dependent 83.4 2.6 9E-05 41.8 8.1 71 173-251 238-312 (367)
231 2db3_A ATP-dependent RNA helic 83.3 2.7 9.3E-05 43.3 8.3 69 175-251 302-374 (434)
232 1q57_A DNA primase/helicase; d 83.3 0.95 3.3E-05 47.8 4.8 52 133-193 239-290 (503)
233 3fe2_A Probable ATP-dependent 83.1 9.9 0.00034 35.2 11.5 74 344-421 102-186 (242)
234 1c4o_A DNA nucleotide excision 83.0 5.2 0.00018 43.7 10.7 76 173-256 439-518 (664)
235 2wv9_A Flavivirin protease NS2 82.4 2.7 9.2E-05 46.0 8.1 68 173-250 410-478 (673)
236 2v6i_A RNA helicase; membrane, 82.4 3 0.0001 42.9 8.1 68 173-249 171-238 (431)
237 1xti_A Probable ATP-dependent 82.3 2.5 8.6E-05 42.5 7.5 74 173-254 250-327 (391)
238 2j0s_A ATP-dependent RNA helic 82.0 3.2 0.00011 42.1 8.1 71 173-251 276-350 (410)
239 3cmu_A Protein RECA, recombina 81.9 2.4 8.2E-05 51.8 7.9 47 134-190 1079-1125(2050)
240 3lda_A DNA repair protein RAD5 81.6 3.8 0.00013 41.6 8.3 18 137-154 179-196 (400)
241 1s2m_A Putative ATP-dependent 81.4 3.1 0.0001 42.0 7.8 71 173-251 258-332 (400)
242 1ypw_A Transitional endoplasmi 81.1 4.6 0.00016 45.2 9.6 19 135-153 237-255 (806)
243 2i1q_A DNA repair and recombin 80.8 1.5 5E-05 43.2 4.9 23 136-158 98-120 (322)
244 3cmw_A Protein RECA, recombina 80.6 2.9 9.8E-05 50.3 7.9 39 135-182 33-71 (1706)
245 2jlq_A Serine protease subunit 80.6 3.7 0.00013 42.5 8.0 69 173-250 188-256 (451)
246 1v5w_A DMC1, meiotic recombina 80.4 2.6 9.1E-05 41.8 6.6 43 137-182 123-165 (343)
247 2yjt_D ATP-dependent RNA helic 81.5 0.34 1.2E-05 42.8 0.0 71 173-251 30-104 (170)
248 1oyw_A RECQ helicase, ATP-depe 79.5 4.6 0.00016 42.7 8.5 76 343-418 64-146 (523)
249 2ffh_A Protein (FFH); SRP54, s 79.1 14 0.00046 37.8 11.5 52 244-295 179-231 (425)
250 2dhr_A FTSH; AAA+ protein, hex 78.7 5.9 0.0002 41.4 8.8 54 97-153 26-81 (499)
251 3ber_A Probable ATP-dependent 78.7 9.2 0.00032 35.7 9.6 74 344-421 111-196 (249)
252 1wp9_A ATP-dependent RNA helic 78.6 9 0.00031 39.3 10.5 74 173-254 361-446 (494)
253 2v1x_A ATP-dependent DNA helic 78.5 5 0.00017 43.1 8.5 59 343-401 83-144 (591)
254 3u4q_B ATP-dependent helicase/ 78.4 6.3 0.00022 46.2 10.0 88 139-256 4-92 (1166)
255 2gxq_A Heat resistant RNA depe 78.3 13 0.00044 33.2 10.2 75 343-421 71-154 (207)
256 1r6b_X CLPA protein; AAA+, N-t 78.1 8.6 0.0003 42.7 10.6 18 136-153 207-224 (758)
257 1e9r_A Conjugal transfer prote 77.9 1.9 6.5E-05 44.4 4.9 44 135-187 52-95 (437)
258 3hws_A ATP-dependent CLP prote 77.9 3.8 0.00013 40.9 7.0 19 135-153 50-68 (363)
259 2j37_W Signal recognition part 77.1 17 0.00059 37.9 11.8 17 138-154 103-119 (504)
260 3e70_C DPA, signal recognition 76.7 29 0.001 33.9 12.8 53 245-297 211-264 (328)
261 2oxc_A Probable ATP-dependent 75.5 4.6 0.00016 37.2 6.4 71 344-419 92-174 (230)
262 2whx_A Serine protease/ntpase/ 75.1 7 0.00024 42.2 8.5 69 173-250 355-423 (618)
263 2xau_A PRE-mRNA-splicing facto 75.0 11 0.00039 41.8 10.3 73 173-251 303-393 (773)
264 2z0m_A 337AA long hypothetical 74.8 6 0.00021 38.5 7.4 68 172-251 219-290 (337)
265 1wrb_A DJVLGB; RNA helicase, D 74.2 31 0.001 31.9 12.0 74 344-421 100-184 (253)
266 3b85_A Phosphate starvation-in 74.1 3.1 0.00011 37.9 4.7 34 119-152 5-38 (208)
267 1vec_A ATP-dependent RNA helic 73.9 8.1 0.00028 34.6 7.5 73 344-420 71-155 (206)
268 1p9r_A General secretion pathw 73.8 3.7 0.00013 41.9 5.6 29 124-152 153-183 (418)
269 2pl3_A Probable ATP-dependent 73.3 20 0.00069 32.8 10.3 73 343-420 96-180 (236)
270 3o8b_A HCV NS3 protease/helica 72.9 5.2 0.00018 43.4 6.7 66 173-250 396-461 (666)
271 2oca_A DAR protein, ATP-depend 72.8 29 0.00098 36.2 12.5 76 173-255 347-426 (510)
272 1qvr_A CLPB protein; coiled co 72.4 5.1 0.00018 45.2 6.9 16 138-153 590-605 (854)
273 2pk2_A Cyclin-T1, protein TAT; 72.4 0.76 2.6E-05 46.0 0.0 8 457-464 240-247 (358)
274 2va8_A SSO2462, SKI2-type heli 72.0 9.6 0.00033 42.0 8.9 73 173-251 252-362 (715)
275 3iuy_A Probable ATP-dependent 71.9 6.2 0.00021 36.2 6.3 74 343-420 93-176 (228)
276 3bor_A Human initiation factor 71.7 9.8 0.00033 35.1 7.7 75 343-420 97-182 (237)
277 1sky_E F1-ATPase, F1-ATP synth 71.3 17 0.00057 37.5 9.7 22 132-153 147-168 (473)
278 2z83_A Helicase/nucleoside tri 71.1 4.8 0.00016 41.7 5.8 68 173-250 190-258 (459)
279 1tue_A Replication protein E1; 70.6 5.8 0.0002 36.0 5.4 44 108-153 28-75 (212)
280 2x8a_A Nuclear valosin-contain 70.1 1.5 5.1E-05 42.1 1.5 54 97-153 5-61 (274)
281 2bjv_A PSP operon transcriptio 69.0 3.2 0.00011 39.3 3.7 20 134-153 27-46 (265)
282 1ofh_A ATP-dependent HSL prote 68.8 10 0.00035 36.5 7.4 18 136-153 50-67 (310)
283 1um8_A ATP-dependent CLP prote 68.6 8.8 0.0003 38.4 7.0 18 136-153 72-89 (376)
284 3cmw_A Protein RECA, recombina 68.1 11 0.00037 45.5 8.5 44 137-189 1432-1475(1706)
285 3ly5_A ATP-dependent RNA helic 67.8 17 0.00058 34.1 8.5 74 343-420 125-210 (262)
286 3eiq_A Eukaryotic initiation f 67.8 2.9 0.0001 42.4 3.3 71 173-251 280-354 (414)
287 3jvv_A Twitching mobility prot 67.8 5.5 0.00019 39.7 5.2 25 136-161 123-147 (356)
288 1tf7_A KAIC; homohexamer, hexa 67.7 20 0.00069 37.7 9.9 127 133-286 278-417 (525)
289 4ag6_A VIRB4 ATPase, type IV s 67.7 4.7 0.00016 40.7 4.8 41 135-184 34-74 (392)
290 2r8r_A Sensor protein; KDPD, P 67.5 5.4 0.00019 36.7 4.6 24 138-161 8-31 (228)
291 3nbx_X ATPase RAVA; AAA+ ATPas 67.4 6.3 0.00021 41.3 5.7 31 123-153 28-58 (500)
292 1qde_A EIF4A, translation init 66.5 5.5 0.00019 36.3 4.7 73 343-420 81-164 (224)
293 1u0j_A DNA replication protein 66.3 11 0.00036 35.8 6.5 43 109-154 74-122 (267)
294 2oap_1 GSPE-2, type II secreti 65.1 8.4 0.00029 40.4 6.2 38 113-152 238-276 (511)
295 1gku_B Reverse gyrase, TOP-RG; 65.0 7.9 0.00027 44.8 6.4 75 343-419 98-183 (1054)
296 2r44_A Uncharacterized protein 64.1 3.6 0.00012 40.4 3.0 24 130-153 40-63 (331)
297 1ojl_A Transcriptional regulat 63.8 4.1 0.00014 39.6 3.3 19 135-153 24-42 (304)
298 3nwn_A Kinesin-like protein KI 63.3 5 0.00017 39.9 3.8 27 128-154 95-123 (359)
299 4dzz_A Plasmid partitioning pr 63.3 14 0.00047 33.0 6.6 32 222-256 55-86 (206)
300 1q0u_A Bstdead; DEAD protein, 62.6 4.3 0.00015 37.1 3.0 73 344-420 72-159 (219)
301 2yhs_A FTSY, cell division pro 61.9 39 0.0014 35.0 10.3 15 138-152 295-309 (503)
302 3rc3_A ATP-dependent RNA helic 61.7 17 0.00059 39.5 8.0 73 176-257 323-401 (677)
303 1z6t_A APAF-1, apoptotic prote 61.2 20 0.0007 38.2 8.6 17 138-154 149-165 (591)
304 3vaa_A Shikimate kinase, SK; s 60.4 5.1 0.00018 35.9 3.1 19 135-153 24-42 (199)
305 1z5z_A Helicase of the SNF2/RA 60.3 31 0.0011 32.6 8.8 92 144-251 92-189 (271)
306 3fmp_B ATP-dependent RNA helic 60.3 1.8 6.3E-05 45.2 0.0 70 173-250 333-406 (479)
307 4a2q_A RIG-I, retinoic acid in 60.2 15 0.0005 41.1 7.4 73 173-251 631-718 (797)
308 1bg2_A Kinesin; motor protein, 60.0 6.4 0.00022 38.6 3.9 27 128-154 68-96 (325)
309 1fuu_A Yeast initiation factor 59.9 17 0.00057 36.2 7.3 73 343-420 88-171 (394)
310 4f4c_A Multidrug resistance pr 59.4 5 0.00017 47.7 3.5 18 134-151 1103-1120(1321)
311 3iij_A Coilin-interacting nucl 59.1 5.3 0.00018 35.1 2.9 20 134-153 9-28 (180)
312 4gl2_A Interferon-induced heli 58.9 4.7 0.00016 44.3 3.0 72 173-250 400-487 (699)
313 2nr8_A Kinesin-like protein KI 58.9 6 0.0002 39.3 3.5 26 128-153 94-121 (358)
314 4a2p_A RIG-I, retinoic acid in 58.9 21 0.0007 37.6 8.1 74 344-421 55-140 (556)
315 1f9v_A Kinesin-like protein KA 58.7 6.7 0.00023 38.8 3.8 27 128-154 75-103 (347)
316 3dkp_A Probable ATP-dependent 58.7 5.4 0.00018 37.1 3.0 75 344-421 98-185 (245)
317 3a8t_A Adenylate isopentenyltr 58.6 5.2 0.00018 39.4 2.9 17 137-153 41-57 (339)
318 1t5c_A CENP-E protein, centrom 58.5 6.1 0.00021 39.1 3.5 26 128-153 68-95 (349)
319 1goj_A Kinesin, kinesin heavy 58.3 6.2 0.00021 39.2 3.5 26 128-153 71-98 (355)
320 3t0q_A AGR253WP; kinesin, alph 58.2 6.7 0.00023 38.9 3.7 26 128-153 76-103 (349)
321 3gbj_A KIF13B protein; kinesin 58.2 6.2 0.00021 39.2 3.4 26 128-153 83-110 (354)
322 1v8k_A Kinesin-like protein KI 58.1 6.7 0.00023 39.7 3.7 26 129-154 146-173 (410)
323 2qmh_A HPR kinase/phosphorylas 58.0 5.7 0.0002 35.8 2.8 18 136-153 34-51 (205)
324 2zfi_A Kinesin-like protein KI 57.9 6.4 0.00022 39.3 3.5 26 128-153 80-107 (366)
325 2r62_A Cell division protease 57.8 2.4 8.1E-05 40.3 0.3 18 136-153 44-61 (268)
326 3dc4_A Kinesin-like protein NO 57.7 6.3 0.00022 38.9 3.4 25 129-153 86-112 (344)
327 3b5x_A Lipid A export ATP-bind 57.7 9.6 0.00033 40.8 5.2 39 243-281 496-534 (582)
328 4a14_A Kinesin, kinesin-like p 57.6 7.3 0.00025 38.5 3.8 26 128-153 74-101 (344)
329 2vvg_A Kinesin-2; motor protei 57.5 7.4 0.00025 38.5 3.9 25 129-153 81-107 (350)
330 3b6u_A Kinesin-like protein KI 57.5 7.2 0.00025 38.9 3.8 26 128-153 92-119 (372)
331 1qhx_A CPT, protein (chloramph 57.5 4.8 0.00017 35.2 2.3 17 137-153 4-20 (178)
332 2h58_A Kinesin-like protein KI 57.5 7.4 0.00025 38.2 3.8 26 128-153 71-98 (330)
333 1x88_A Kinesin-like protein KI 57.2 6 0.00021 39.4 3.2 26 128-153 79-106 (359)
334 3tbk_A RIG-I helicase domain; 57.0 22 0.00075 37.3 7.9 73 173-251 389-476 (555)
335 2gza_A Type IV secretion syste 57.0 7 0.00024 39.0 3.7 20 132-151 171-190 (361)
336 3lre_A Kinesin-like protein KI 56.8 7.6 0.00026 38.6 3.8 25 129-153 97-123 (355)
337 3h1t_A Type I site-specific re 56.7 19 0.00064 38.5 7.3 77 173-255 439-527 (590)
338 4etp_A Kinesin-like protein KA 56.6 8 0.00027 39.1 4.0 26 129-154 132-159 (403)
339 2p6r_A Afuhel308 helicase; pro 56.5 13 0.00046 40.7 6.2 73 173-251 242-346 (702)
340 2y65_A Kinesin, kinesin heavy 56.4 7.9 0.00027 38.6 3.9 26 128-153 75-102 (365)
341 1iy2_A ATP-dependent metallopr 56.3 5.6 0.00019 37.9 2.7 54 97-153 35-90 (278)
342 3fho_A ATP-dependent RNA helic 56.3 3.5 0.00012 43.4 1.4 71 173-251 357-431 (508)
343 3lw7_A Adenylate kinase relate 56.3 5 0.00017 34.7 2.2 16 138-153 3-18 (179)
344 3trf_A Shikimate kinase, SK; a 56.1 6.3 0.00021 34.7 2.9 19 136-154 5-23 (185)
345 2eyu_A Twitching motility prot 56.1 5.5 0.00019 37.7 2.5 20 133-152 22-41 (261)
346 1kgd_A CASK, peripheral plasma 56.0 6.7 0.00023 34.5 3.0 18 135-152 4-21 (180)
347 2wbe_C Bipolar kinesin KRP-130 55.8 6.3 0.00022 39.4 3.1 26 128-153 91-118 (373)
348 1zp6_A Hypothetical protein AT 54.9 4.2 0.00014 36.1 1.5 19 134-152 7-25 (191)
349 1y63_A LMAJ004144AAA protein; 54.8 5.8 0.0002 35.0 2.4 18 136-153 10-27 (184)
350 2zj8_A DNA helicase, putative 54.8 18 0.00063 39.7 7.0 72 173-250 237-343 (720)
351 2owm_A Nckin3-434, related to 54.7 7.6 0.00026 39.8 3.5 26 128-153 127-154 (443)
352 2heh_A KIF2C protein; kinesin, 54.6 8 0.00027 38.8 3.6 26 129-154 126-153 (387)
353 2r2a_A Uncharacterized protein 54.3 8 0.00027 34.8 3.2 18 138-155 7-24 (199)
354 2c9o_A RUVB-like 1; hexameric 54.1 13 0.00045 38.3 5.3 18 136-153 63-80 (456)
355 3exa_A TRNA delta(2)-isopenten 53.7 7 0.00024 38.0 2.9 16 138-153 5-20 (322)
356 1kht_A Adenylate kinase; phosp 53.5 6 0.00021 34.9 2.3 18 136-153 3-20 (192)
357 2ze6_A Isopentenyl transferase 53.2 7.2 0.00025 36.6 2.9 16 138-153 3-18 (253)
358 2qor_A Guanylate kinase; phosp 53.2 6.2 0.00021 35.5 2.4 21 133-153 9-29 (204)
359 2ewv_A Twitching motility prot 53.1 7.1 0.00024 39.2 3.0 19 134-152 134-152 (372)
360 3foz_A TRNA delta(2)-isopenten 53.1 7.3 0.00025 37.8 2.9 16 138-153 12-27 (316)
361 3cob_A Kinesin heavy chain-lik 52.8 7 0.00024 39.0 2.8 25 129-153 71-97 (369)
362 2rep_A Kinesin-like protein KI 52.8 8.3 0.00028 38.6 3.3 25 129-153 107-133 (376)
363 3dmq_A RNA polymerase-associat 52.0 12 0.00041 42.8 5.0 76 173-255 503-584 (968)
364 2ius_A DNA translocase FTSK; n 52.0 12 0.0004 39.3 4.4 24 135-159 166-189 (512)
365 2pt7_A CAG-ALFA; ATPase, prote 51.9 6.7 0.00023 38.6 2.5 19 133-151 168-186 (330)
366 3kb2_A SPBC2 prophage-derived 51.8 6.5 0.00022 33.9 2.2 16 138-153 3-18 (173)
367 4a2w_A RIG-I, retinoic acid in 51.7 14 0.00047 42.2 5.4 74 172-251 630-718 (936)
368 1lvg_A Guanylate kinase, GMP k 51.7 8.9 0.00031 34.4 3.2 18 135-152 3-20 (198)
369 3bfn_A Kinesin-like protein KI 51.7 7.3 0.00025 39.1 2.7 23 131-153 92-116 (388)
370 3u06_A Protein claret segregat 51.5 10 0.00035 38.4 3.8 26 128-153 129-156 (412)
371 2iut_A DNA translocase FTSK; n 51.3 12 0.00041 39.6 4.4 41 137-182 215-255 (574)
372 2j41_A Guanylate kinase; GMP, 51.2 8.7 0.0003 34.4 3.0 20 134-153 4-23 (207)
373 3fmo_B ATP-dependent RNA helic 51.2 23 0.00078 34.1 6.2 70 345-421 163-245 (300)
374 3tau_A Guanylate kinase, GMP k 51.1 9 0.00031 34.6 3.1 18 136-153 8-25 (208)
375 1kag_A SKI, shikimate kinase I 50.8 10 0.00036 32.7 3.4 18 136-153 4-21 (173)
376 1w36_B RECB, exodeoxyribonucle 50.8 20 0.0007 41.9 6.8 59 138-196 18-79 (1180)
377 3tr0_A Guanylate kinase, GMP k 50.7 8.9 0.00031 34.3 3.0 18 135-152 6-23 (205)
378 2fsf_A Preprotein translocase 50.6 33 0.0011 38.0 7.9 69 343-417 114-200 (853)
379 4f4c_A Multidrug resistance pr 50.5 6.3 0.00022 46.8 2.4 40 243-282 570-609 (1321)
380 1ly1_A Polynucleotide kinase; 50.2 7.1 0.00024 34.0 2.2 16 138-153 4-19 (181)
381 1m7g_A Adenylylsulfate kinase; 50.1 10 0.00035 34.2 3.4 31 122-153 12-42 (211)
382 3cm0_A Adenylate kinase; ATP-b 49.6 5.6 0.00019 35.0 1.4 18 136-153 4-21 (186)
383 3crm_A TRNA delta(2)-isopenten 48.8 9.2 0.00031 37.4 2.9 16 138-153 7-22 (323)
384 3nwj_A ATSK2; P loop, shikimat 48.0 13 0.00044 34.9 3.7 20 134-153 46-65 (250)
385 2r2a_A Uncharacterized protein 47.7 11 0.00038 33.9 3.1 40 246-285 88-132 (199)
386 3mwy_W Chromo domain-containin 47.7 93 0.0032 34.5 11.3 72 173-252 572-650 (800)
387 1zuh_A Shikimate kinase; alpha 47.6 11 0.00036 32.6 2.9 18 137-154 8-25 (168)
388 3fb4_A Adenylate kinase; psych 47.5 8.1 0.00028 35.0 2.2 16 138-153 2-17 (216)
389 3sr0_A Adenylate kinase; phosp 47.5 10 0.00036 34.3 2.9 18 137-154 1-18 (206)
390 1rj9_A FTSY, signal recognitio 46.9 21 0.00073 34.4 5.2 17 136-152 102-118 (304)
391 3dl0_A Adenylate kinase; phosp 46.8 8.4 0.00029 34.9 2.2 16 138-153 2-17 (216)
392 2c95_A Adenylate kinase 1; tra 46.7 10 0.00036 33.5 2.8 19 135-153 8-26 (196)
393 1tf5_A Preprotein translocase 46.6 48 0.0016 36.8 8.3 69 343-417 123-209 (844)
394 4fcw_A Chaperone protein CLPB; 46.2 19 0.00066 34.5 4.9 16 138-153 49-64 (311)
395 2v54_A DTMP kinase, thymidylat 46.1 8.5 0.00029 34.4 2.1 19 135-153 3-21 (204)
396 1knq_A Gluconate kinase; ALFA/ 46.1 8.2 0.00028 33.6 1.9 17 137-153 9-25 (175)
397 4gp7_A Metallophosphoesterase; 46.1 6.9 0.00024 34.1 1.4 19 135-153 8-26 (171)
398 2yvu_A Probable adenylyl-sulfa 45.9 20 0.00068 31.4 4.5 18 136-153 13-30 (186)
399 1zu4_A FTSY; GTPase, signal re 45.8 20 0.00068 35.0 4.8 18 137-154 106-123 (320)
400 1z6g_A Guanylate kinase; struc 45.4 14 0.00047 33.7 3.4 20 133-152 20-39 (218)
401 2pt5_A Shikimate kinase, SK; a 45.3 9.4 0.00032 32.8 2.2 16 138-153 2-17 (168)
402 3d3q_A TRNA delta(2)-isopenten 45.1 11 0.00039 37.0 2.9 16 138-153 9-24 (340)
403 2rhm_A Putative kinase; P-loop 45.0 9.4 0.00032 33.7 2.2 17 137-153 6-22 (193)
404 1via_A Shikimate kinase; struc 44.9 13 0.00046 32.2 3.1 16 138-153 6-21 (175)
405 2v3c_C SRP54, signal recogniti 44.8 18 0.00061 37.0 4.4 19 137-155 100-118 (432)
406 1g8p_A Magnesium-chelatase 38 44.4 12 0.0004 36.8 3.0 18 136-153 45-62 (350)
407 3a00_A Guanylate kinase, GMP k 44.4 14 0.00049 32.5 3.3 15 138-152 3-17 (186)
408 4eun_A Thermoresistant glucoki 44.3 13 0.00046 33.1 3.1 18 136-153 29-46 (200)
409 1znw_A Guanylate kinase, GMP k 44.3 13 0.00046 33.3 3.1 21 132-152 16-36 (207)
410 3pxg_A Negative regulator of g 44.2 16 0.00054 37.8 4.1 18 136-153 201-218 (468)
411 3t61_A Gluconokinase; PSI-biol 44.2 9.9 0.00034 34.0 2.2 17 137-153 19-35 (202)
412 3tlx_A Adenylate kinase 2; str 44.0 15 0.00052 34.1 3.5 18 136-153 29-46 (243)
413 3b6e_A Interferon-induced heli 43.9 16 0.00055 32.7 3.7 74 344-421 82-172 (216)
414 1tev_A UMP-CMP kinase; ploop, 43.8 8.9 0.00031 33.8 1.8 17 137-153 4-20 (196)
415 4akg_A Glutathione S-transfera 43.3 25 0.00086 44.6 6.1 48 106-154 890-941 (2695)
416 1e6c_A Shikimate kinase; phosp 43.3 12 0.0004 32.4 2.5 17 137-153 3-19 (173)
417 1zd8_A GTP:AMP phosphotransfer 43.3 11 0.00036 34.6 2.3 18 136-153 7-24 (227)
418 2ck3_A ATP synthase subunit al 43.3 1.7E+02 0.0058 30.3 11.4 67 128-195 151-222 (510)
419 1ye8_A Protein THEP1, hypothet 42.8 14 0.00047 32.5 2.9 15 138-152 2-16 (178)
420 1g41_A Heat shock protein HSLU 42.7 55 0.0019 33.4 7.7 18 136-153 50-67 (444)
421 1e4v_A Adenylate kinase; trans 42.7 10 0.00036 34.3 2.1 16 138-153 2-17 (214)
422 1in4_A RUVB, holliday junction 42.7 14 0.00047 36.3 3.2 17 137-153 52-68 (334)
423 1nks_A Adenylate kinase; therm 42.4 11 0.00037 33.2 2.1 16 138-153 3-18 (194)
424 1ex7_A Guanylate kinase; subst 42.4 12 0.00042 33.2 2.5 15 137-151 2-16 (186)
425 2bwj_A Adenylate kinase 5; pho 42.4 11 0.00036 33.5 2.1 18 136-153 12-29 (199)
426 2bdt_A BH3686; alpha-beta prot 42.3 14 0.00048 32.5 2.9 16 138-153 4-19 (189)
427 1aky_A Adenylate kinase; ATP:A 42.0 12 0.00041 34.0 2.4 18 136-153 4-21 (220)
428 2iyv_A Shikimate kinase, SK; t 41.8 13 0.00043 32.6 2.5 17 137-153 3-19 (184)
429 3eph_A TRNA isopentenyltransfe 41.7 13 0.00046 37.4 2.8 16 138-153 4-19 (409)
430 2cdn_A Adenylate kinase; phosp 41.7 12 0.00043 33.3 2.5 17 137-153 21-37 (201)
431 1nij_A Hypothetical protein YJ 41.4 25 0.00084 34.2 4.7 14 138-151 6-19 (318)
432 3f9v_A Minichromosome maintena 41.2 15 0.0005 39.5 3.2 15 138-152 329-343 (595)
433 2ykg_A Probable ATP-dependent 41.1 18 0.00061 39.5 4.1 73 173-251 398-485 (696)
434 3uie_A Adenylyl-sulfate kinase 40.8 14 0.00048 33.0 2.6 19 135-153 24-42 (200)
435 1ry6_A Internal kinesin; kines 40.7 16 0.00056 36.2 3.3 20 135-154 82-103 (360)
436 1f2t_A RAD50 ABC-ATPase; DNA d 40.7 20 0.00067 30.4 3.4 14 139-152 26-39 (149)
437 1ak2_A Adenylate kinase isoenz 40.5 16 0.00054 33.6 3.0 18 136-153 16-33 (233)
438 3k1j_A LON protease, ATP-depen 40.5 22 0.00075 38.2 4.5 24 130-153 54-77 (604)
439 1gvn_B Zeta; postsegregational 40.3 12 0.00039 36.0 2.1 16 138-153 35-50 (287)
440 3bs4_A Uncharacterized protein 40.2 27 0.00091 32.9 4.5 51 137-197 22-72 (260)
441 2qt1_A Nicotinamide riboside k 40.2 9.4 0.00032 34.3 1.3 21 133-153 18-38 (207)
442 2plr_A DTMP kinase, probable t 40.1 11 0.00038 33.8 1.8 18 136-153 4-21 (213)
443 4a74_A DNA repair and recombin 40.1 12 0.0004 34.1 2.1 19 135-153 24-42 (231)
444 1zak_A Adenylate kinase; ATP:A 40.0 17 0.0006 32.9 3.2 17 137-153 6-22 (222)
445 3mm4_A Histidine kinase homolo 40.0 1.9E+02 0.0065 25.3 12.9 127 136-286 20-161 (206)
446 1ypw_A Transitional endoplasmi 39.9 7 0.00024 43.7 0.5 19 135-153 510-528 (806)
447 3lnc_A Guanylate kinase, GMP k 39.5 8.7 0.0003 35.3 1.0 20 133-152 24-43 (231)
448 2pez_A Bifunctional 3'-phospho 39.4 12 0.00041 32.6 1.9 18 136-153 5-22 (179)
449 1xjc_A MOBB protein homolog; s 39.4 34 0.0012 29.7 4.8 15 138-152 6-20 (169)
450 1qf9_A UMP/CMP kinase, protein 38.9 17 0.00057 31.9 2.8 16 138-153 8-23 (194)
451 2jaq_A Deoxyguanosine kinase; 38.7 17 0.00058 32.2 2.9 16 138-153 2-17 (205)
452 1nkt_A Preprotein translocase 38.6 65 0.0022 35.9 7.8 69 343-417 151-237 (922)
453 2ipc_A Preprotein translocase 38.5 59 0.002 36.4 7.4 54 343-402 119-177 (997)
454 1j8m_F SRP54, signal recogniti 38.4 28 0.00096 33.4 4.5 19 137-155 99-117 (297)
455 1ukz_A Uridylate kinase; trans 38.3 14 0.00048 33.0 2.2 16 138-153 17-32 (203)
456 4ag6_A VIRB4 ATPase, type IV s 38.3 21 0.00071 35.9 3.7 41 245-285 262-306 (392)
457 3kta_A Chromosome segregation 38.2 19 0.00064 31.4 3.0 15 138-152 28-42 (182)
458 1jjv_A Dephospho-COA kinase; P 38.0 14 0.00048 33.0 2.2 16 138-153 4-19 (206)
459 1byi_A Dethiobiotin synthase; 37.9 35 0.0012 30.7 5.0 33 140-181 6-38 (224)
460 3umf_A Adenylate kinase; rossm 37.8 18 0.00062 33.0 2.9 18 137-154 30-47 (217)
461 3vkg_A Dynein heavy chain, cyt 37.7 37 0.0013 43.8 6.4 47 107-154 874-924 (3245)
462 3jyo_A Quinate/shikimate dehyd 37.7 74 0.0025 30.2 7.3 76 134-228 125-201 (283)
463 3b9q_A Chloroplast SRP recepto 37.7 27 0.00091 33.7 4.2 17 136-152 100-116 (302)
464 2vli_A Antibiotic resistance p 37.6 12 0.00041 32.7 1.6 18 136-153 5-22 (183)
465 3zq6_A Putative arsenical pump 37.4 31 0.0011 33.5 4.8 33 139-180 17-49 (324)
466 2if2_A Dephospho-COA kinase; a 37.1 15 0.0005 32.8 2.2 16 138-153 3-18 (204)
467 3be4_A Adenylate kinase; malar 37.1 19 0.00065 32.6 3.0 17 137-153 6-22 (217)
468 1z63_A Helicase of the SNF2/RA 37.0 71 0.0024 33.0 7.8 76 173-255 341-422 (500)
469 1nn5_A Similar to deoxythymidy 36.9 15 0.00053 32.9 2.3 19 135-153 8-26 (215)
470 1s96_A Guanylate kinase, GMP k 36.8 21 0.0007 32.6 3.1 19 134-152 14-32 (219)
471 2z0h_A DTMP kinase, thymidylat 36.4 16 0.00053 32.3 2.2 15 139-153 3-17 (197)
472 2xb4_A Adenylate kinase; ATP-b 36.4 15 0.00052 33.5 2.2 16 138-153 2-17 (223)
473 1jr3_D DNA polymerase III, del 36.4 26 0.00089 34.3 4.1 57 229-287 61-118 (343)
474 2wwf_A Thymidilate kinase, put 36.3 16 0.00055 32.7 2.3 19 135-153 9-27 (212)
475 2pbr_A DTMP kinase, thymidylat 36.3 16 0.00053 32.2 2.2 16 138-153 2-17 (195)
476 1cke_A CK, MSSA, protein (cyti 36.0 20 0.00067 32.5 2.9 17 137-153 6-22 (227)
477 3ice_A Transcription terminati 35.6 93 0.0032 31.2 7.7 31 123-153 158-191 (422)
478 3asz_A Uridine kinase; cytidin 35.1 16 0.00056 32.7 2.2 16 137-152 7-22 (211)
479 4h1g_A Maltose binding protein 35.1 25 0.00086 38.6 4.0 25 129-153 454-480 (715)
480 3pxi_A Negative regulator of g 34.9 25 0.00087 38.9 4.1 18 136-153 201-218 (758)
481 1np6_A Molybdopterin-guanine d 34.8 30 0.001 30.2 3.7 15 138-152 8-22 (174)
482 3oaa_A ATP synthase subunit al 34.6 2.7E+02 0.0093 28.7 11.2 60 128-196 151-215 (513)
483 3gk5_A Uncharacterized rhodane 34.5 32 0.0011 27.1 3.6 44 335-378 46-90 (108)
484 2v9p_A Replication protein E1; 34.5 21 0.00071 34.5 2.8 18 134-151 124-141 (305)
485 2w00_A HSDR, R.ECOR124I; ATP-b 34.5 1.4E+02 0.0048 34.2 10.1 25 173-197 537-561 (1038)
486 3ug7_A Arsenical pump-driving 34.4 36 0.0012 33.5 4.7 33 139-180 29-61 (349)
487 2vhj_A Ntpase P4, P4; non- hyd 34.3 24 0.00082 34.4 3.2 22 135-156 122-143 (331)
488 2f1r_A Molybdopterin-guanine d 34.3 15 0.00052 32.0 1.7 16 138-153 4-19 (171)
489 2i3b_A HCR-ntpase, human cance 33.9 26 0.0009 31.0 3.3 41 243-286 103-145 (189)
490 3c8u_A Fructokinase; YP_612366 33.7 22 0.00075 31.9 2.8 16 137-152 23-38 (208)
491 4a4z_A Antiviral helicase SKI2 33.6 1.2E+02 0.0039 34.8 9.3 75 173-254 336-451 (997)
492 2og2_A Putative signal recogni 33.5 40 0.0014 33.4 4.8 16 138-153 159-174 (359)
493 3tif_A Uncharacterized ABC tra 33.2 17 0.00059 33.5 2.0 17 135-151 30-46 (235)
494 3a4m_A L-seryl-tRNA(SEC) kinas 33.2 18 0.00063 33.9 2.2 16 138-153 6-21 (260)
495 3dmn_A Putative DNA helicase; 33.1 2.3E+02 0.0079 24.2 10.9 63 344-421 61-124 (174)
496 1uf9_A TT1252 protein; P-loop, 33.0 23 0.0008 31.3 2.8 19 139-157 11-29 (203)
497 1htw_A HI0065; nucleotide-bind 32.7 36 0.0012 29.1 3.8 32 126-157 19-54 (158)
498 2p5t_B PEZT; postsegregational 32.6 15 0.00052 34.3 1.5 15 139-153 35-49 (253)
499 1ihu_A Arsenical pump-driving 32.4 38 0.0013 36.1 4.8 32 139-179 11-42 (589)
500 3l9o_A ATP-dependent RNA helic 32.0 44 0.0015 38.7 5.5 76 331-417 214-296 (1108)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.3e-57 Score=480.43 Aligned_cols=375 Identities=34% Similarity=0.548 Sum_probs=329.2
Q ss_pred CCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007106 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (618)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~ 174 (618)
+.+...|+++++++.++++|++.+|.+|||+|+++|+.++++++++++++||||||++|++|++..+...... ....++
T Consensus 52 p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~-~~~~~~ 130 (434)
T 2db3_A 52 PQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE-LELGRP 130 (434)
T ss_dssp CCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC-CCTTCC
T ss_pred CCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc-cccCCc
Confidence 4456789999999999999999999999999999999999999999999999999999999999988763221 123467
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEc
Q 007106 175 LCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (618)
Q Consensus 175 ~~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViD 252 (618)
++||++||++|+.|++++++++.. .+++.+++++.....+...+..+++|+|+||++|++++....+.+.++++||+|
T Consensus 131 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlD 210 (434)
T 2db3_A 131 QVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLD 210 (434)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEE
T ss_pred cEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEc
Confidence 899999999999999999999874 467788899988888888888889999999999999999888889999999999
Q ss_pred hhhhhccCCcHHHHHHHHHhC--CCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcch
Q 007106 253 EADQMLSVGFAEDVEVILERL--PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330 (618)
Q Consensus 253 EaH~~~~~~~~~~~~~il~~l--~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k 330 (618)
|||++++++|...+..++..+ ++.+|+++||||+++.+..+...++.++..+.+... ......+.+.........|
T Consensus 211 Eah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~--~~~~~~i~~~~~~~~~~~k 288 (434)
T 2db3_A 211 EADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIV--GGACSDVKQTIYEVNKYAK 288 (434)
T ss_dssp THHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESST--TCCCTTEEEEEEECCGGGH
T ss_pred cHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccc--cccccccceEEEEeCcHHH
Confidence 999999999999999999885 578999999999999999999999988877765322 2233455666666667778
Q ss_pred hHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCC
Q 007106 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409 (618)
Q Consensus 331 ~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi 409 (618)
...+.+++.... .++||||++++.++.+++.|.+. +.+..+||++++.+|+++++.|++|+.+|||||+++++|||+
T Consensus 289 ~~~l~~~l~~~~--~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi 366 (434)
T 2db3_A 289 RSKLIEILSEQA--DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDI 366 (434)
T ss_dssp HHHHHHHHHHCC--TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCC
T ss_pred HHHHHHHHHhCC--CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCc
Confidence 888888877653 35999999999999999999664 889999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecc-hhHHHHHHHHHHhCCCcccCCcccc
Q 007106 410 PNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTD-QQARQVKSIERDVGCRFTQLPRIAV 474 (618)
Q Consensus 410 ~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~ 474 (618)
|++++||+||+|.++++|+||+||+||.|++|.|++|+++ ++...+..+.+.+....+++|.++.
T Consensus 367 ~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~ 432 (434)
T 2db3_A 367 KNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLR 432 (434)
T ss_dssp TTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC
T ss_pred ccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9999999999999999999999999999999999999994 5667778888888877788877653
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.1e-54 Score=457.08 Aligned_cols=377 Identities=34% Similarity=0.549 Sum_probs=324.1
Q ss_pred CCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhh-------
Q 007106 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK------- 167 (618)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~------- 167 (618)
+.+..+|+++++++.+.+.|...++.+|+|+|+++|+.++.++++++++|||+|||++|++|++..+......
T Consensus 11 p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~ 90 (417)
T 2i4i_A 11 PPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMK 90 (417)
T ss_dssp CCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccc
Confidence 3455679999999999999999999999999999999999999999999999999999999999888653211
Q ss_pred -----cCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcC
Q 007106 168 -----HGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA 240 (618)
Q Consensus 168 -----~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~ 240 (618)
......+++||++||++|+.|++++++++.. .+++..++++.....+...+...++|+|+||++|.+.+....
T Consensus 91 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~ 170 (417)
T 2i4i_A 91 ENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK 170 (417)
T ss_dssp HCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS
T ss_pred cccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCC
Confidence 0112246899999999999999999998763 467788888888877777787889999999999999999888
Q ss_pred CCCCCccEEEEchhhhhccCCcHHHHHHHHHhC--CC--CCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccC
Q 007106 241 LNLSEVQFVVLDEADQMLSVGFAEDVEVILERL--PQ--NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316 (618)
Q Consensus 241 ~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l--~~--~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~ 316 (618)
+.+.++++|||||||++.+++|...+..++... +. ..|+++||||+++.+..+...++.++..+.... ......
T Consensus 171 ~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 248 (417)
T 2i4i_A 171 IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR--VGSTSE 248 (417)
T ss_dssp BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC------CCS
T ss_pred cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCC--CCCCcc
Confidence 889999999999999999999999999998753 32 678999999999999999988988876665422 222334
Q ss_pred CeEEEEEeccCcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCCcc
Q 007106 317 GISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFN 395 (618)
Q Consensus 317 ~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~ 395 (618)
.+...........+...+.++++......++||||++++.++.+++.|.+ .+.+..+|+++++++|.++++.|++++.+
T Consensus 249 ~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 328 (417)
T 2i4i_A 249 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 328 (417)
T ss_dssp SEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSC
T ss_pred CceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCC
Confidence 55555666666778888888888876778999999999999999999965 48899999999999999999999999999
Q ss_pred EEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCcccCCccc
Q 007106 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIA 473 (618)
Q Consensus 396 vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 473 (618)
|||||+++++|||+|++++||++++|+++.+|+||+||+||.|++|.|++++++.+...++.+.+.+.....+++.+.
T Consensus 329 vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l 406 (417)
T 2i4i_A 329 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWL 406 (417)
T ss_dssp EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHH
T ss_pred EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcCcCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998888876666666543
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.8e-53 Score=450.20 Aligned_cols=366 Identities=35% Similarity=0.609 Sum_probs=320.2
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeE
Q 007106 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~ 176 (618)
....|+++++++.+++.|+..++.+|+|+|+++++.+++++++++++|||+|||++|++|++..+.. .....++
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~------~~~~~~~ 108 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI------QVRETQA 108 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT------TSCSCCE
T ss_pred CCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh------ccCCceE
Confidence 3457999999999999999999999999999999999999999999999999999999999877532 1236789
Q ss_pred EEEcCcHHHHHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchh
Q 007106 177 LVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (618)
Q Consensus 177 lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEa 254 (618)
||++||++|+.||++++.++.. .+.+..++++.....+...+...++|+|+||++|.+.+....+.+.++++||+|||
T Consensus 109 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEa 188 (410)
T 2j0s_A 109 LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEA 188 (410)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred EEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccH
Confidence 9999999999999999998764 35667778888877777777788999999999999999988888899999999999
Q ss_pred hhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEecc-CcchhHH
Q 007106 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS-MYEKPSI 333 (618)
Q Consensus 255 H~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~ 333 (618)
|++.++++...+..++..+++..|+++||||+++.+..+...++.++..+.... .......+........ ...+...
T Consensus 189 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~k~~~ 266 (410)
T 2j0s_A 189 DEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKR--DELTLEGIKQFFVAVEREEWKFDT 266 (410)
T ss_dssp HHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCG--GGCSCTTEEEEEEEESSTTHHHHH
T ss_pred HHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecC--ccccCCCceEEEEEeCcHHhHHHH
Confidence 999999999999999999999999999999999998888888888887664322 2222233444444333 3347777
Q ss_pred HHHHHHHhccCCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCc
Q 007106 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (618)
Q Consensus 334 l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~ 412 (618)
+..++.... ..++||||++++.++.+++.|.+ .+.+..+|+++++.+|+++++.|++++.+|||||+++++|||+|++
T Consensus 267 l~~~~~~~~-~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v 345 (410)
T 2j0s_A 267 LCDLYDTLT-ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQV 345 (410)
T ss_dssp HHHHHHHHT-SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTE
T ss_pred HHHHHHhcC-CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccC
Confidence 777776653 46999999999999999999965 4889999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCcccCCc
Q 007106 413 DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPR 471 (618)
Q Consensus 413 ~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 471 (618)
++||++++|+++..|+||+||++|.|++|.|++++++.+...++.+++.++..++++|.
T Consensus 346 ~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 346 SLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp EEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred CEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceeccc
Confidence 99999999999999999999999999999999999999999999999999998887764
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.2e-52 Score=442.32 Aligned_cols=367 Identities=31% Similarity=0.565 Sum_probs=320.3
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCe
Q 007106 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (618)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~ 175 (618)
.....|+++++++++++.|.+.++..|+|+|+++++.+++++++++.+|||+|||++|++|++..+.. ...+.+
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~------~~~~~~ 91 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP------KLNKIQ 91 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT------TSCSCC
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh------ccCCcc
Confidence 34557999999999999999999999999999999999999999999999999999999999877532 123568
Q ss_pred EEEEcCcHHHHHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEch
Q 007106 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (618)
Q Consensus 176 ~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDE 253 (618)
+||++|+++|+.|+++.+.+++. .+.+..++++.....+...+...++|+|+||++|.+.+......+.++++||+||
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE 171 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDE 171 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEES
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeC
Confidence 99999999999999999999876 4567777787776666666667899999999999999888777889999999999
Q ss_pred hhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHH
Q 007106 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333 (618)
Q Consensus 254 aH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 333 (618)
||++.+..+...+..++..+++..++++||||+++.+......++..+..+..... .....+..+........+...
T Consensus 172 aH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~~~ 248 (400)
T 1s2m_A 172 ADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE---LTLKGITQYYAFVEERQKLHC 248 (400)
T ss_dssp HHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS---CBCTTEEEEEEECCGGGHHHH
T ss_pred chHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc---cccCCceeEEEEechhhHHHH
Confidence 99998877888888888888889999999999999999988888888776654322 223345555555666667777
Q ss_pred HHHHHHHhccCCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCc
Q 007106 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (618)
Q Consensus 334 l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~ 412 (618)
+..++... ...++||||++++.++.+++.|.+ .+.+..+|++|++.+|+++++.|++++.+|||||+++++|+|+|++
T Consensus 249 l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~ 327 (400)
T 1s2m_A 249 LNTLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAV 327 (400)
T ss_dssp HHHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTE
T ss_pred HHHHHhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCC
Confidence 77777664 457999999999999999999976 4889999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCcccCCcc
Q 007106 413 DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRI 472 (618)
Q Consensus 413 ~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 472 (618)
++||++++|+++..|+||+||++|.|++|.|++++++.+...++.+++.++..++++|..
T Consensus 328 ~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 387 (400)
T 1s2m_A 328 NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPAT 387 (400)
T ss_dssp EEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSS
T ss_pred CEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccccc
Confidence 999999999999999999999999999999999999999999999999999999887754
No 5
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=9.7e-52 Score=434.06 Aligned_cols=366 Identities=27% Similarity=0.492 Sum_probs=316.7
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEE
Q 007106 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (618)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~li 178 (618)
.+|+++++++.+++.|...++..|+|+|+++++.+++++++++.+|||+|||++|++|++..+.. .....++||
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~------~~~~~~~li 81 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP------VTGQVSVLV 81 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC------CTTCCCEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc------cCCCeeEEE
Confidence 46889999999999999999999999999999999999999999999999999999999877532 123568999
Q ss_pred EcCcHHHHHHHHHHHHHhC---CCCcEEEEEcCcchhhhhHHhhc-CCCEEEEChHHHHHHHHhcCCCCCCccEEEEchh
Q 007106 179 LAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (618)
Q Consensus 179 l~Pt~~La~q~~~~l~~~~---~~~~~~~~~g~~~~~~~~~~l~~-~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEa 254 (618)
+|||++|+.||++++.++. +.+++..++++.........+.. .++|+|+||++|...+......+.++++||+|||
T Consensus 82 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEa 161 (391)
T 1xti_A 82 MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEC 161 (391)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSH
T ss_pred ECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCH
Confidence 9999999999999998875 36778888888877666655554 4799999999999999888888899999999999
Q ss_pred hhhccC-CcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHH
Q 007106 255 DQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333 (618)
Q Consensus 255 H~~~~~-~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 333 (618)
|++.++ .+...+..++...++..|+++||||+++.+..+...++.++..+...... ......+...........+...
T Consensus 162 H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 240 (391)
T 1xti_A 162 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDET-KLTLHGLQQYYVKLKDNEKNRK 240 (391)
T ss_dssp HHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCC-CCCCTTCEEEEEECCGGGHHHH
T ss_pred HHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCcc-ccCcccceEEEEEcCchhHHHH
Confidence 999874 57778888888888899999999999999999999999888776543322 2233445556666666777777
Q ss_pred HHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCc
Q 007106 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (618)
Q Consensus 334 l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~ 412 (618)
+..++... +..++||||++++.++.+++.|.+. +.+..+|+++++++|+++++.|++++.+|||||+++++|+|+|++
T Consensus 241 l~~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~ 319 (391)
T 1xti_A 241 LFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERV 319 (391)
T ss_dssp HHHHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTE
T ss_pred HHHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccC
Confidence 88887765 5679999999999999999999764 889999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecch-hHHHHHHHHHHhCCCcccCCcc
Q 007106 413 DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ-QARQVKSIERDVGCRFTQLPRI 472 (618)
Q Consensus 413 ~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~ 472 (618)
++||++++|+++..|+||+||++|.|+++.|++++++. +...++.+++.++..+++++..
T Consensus 320 ~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 320 NIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp EEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred CEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 99999999999999999999999999999999999876 4566788999999988887764
No 6
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.9e-52 Score=441.49 Aligned_cols=370 Identities=32% Similarity=0.544 Sum_probs=304.0
Q ss_pred CCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007106 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (618)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~ 174 (618)
......|+++++++.+++.|++.++..|+++|+++++.+++++++++++|||+|||++|+++++..+.. .....
T Consensus 36 ~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~------~~~~~ 109 (414)
T 3eiq_A 36 NEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL------DLKAT 109 (414)
T ss_dssp CCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT------TSCSC
T ss_pred cchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh------cCCce
Confidence 344457889999999999999999999999999999999999999999999999999999999987632 12367
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhh-cCCCEEEEChHHHHHHHHhcCCCCCCccEEEE
Q 007106 175 LCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (618)
Q Consensus 175 ~~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~-~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vVi 251 (618)
++||++||++|+.|+++.++++.. .+.+..++++.........+. ..++|+|+||++|.+.+....+.+.++++||+
T Consensus 110 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 110 QALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred eEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 899999999999999999998763 456666677776666555555 56899999999999999988888899999999
Q ss_pred chhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchh
Q 007106 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331 (618)
Q Consensus 252 DEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~ 331 (618)
||||++.++++...+..++..++++.|+|+||||+++.+..+...++.++..+..... ..........+........+.
T Consensus 190 DEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 268 (414)
T 3eiq_A 190 DEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKE-ELTLEGIRQFYINVEREEWKL 268 (414)
T ss_dssp CSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCC-CCCTTSCCEEEEECSSSTTHH
T ss_pred ECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCC-ccCCCCceEEEEEeChHHhHH
Confidence 9999999999999999999999999999999999999999999999888877654222 222222223333334444577
Q ss_pred HHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCC
Q 007106 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410 (618)
Q Consensus 332 ~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~ 410 (618)
..+..++... ...++||||++++.++.+++.|.+. +.+..+|++|++++|+++++.|++++.+|||||+++++|||+|
T Consensus 269 ~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 347 (414)
T 3eiq_A 269 DTLCDLYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQ 347 (414)
T ss_dssp HHHHHHHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGG
T ss_pred HHHHHHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCcc
Confidence 7777777665 4569999999999999999999764 8899999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCcccCCcc
Q 007106 411 NVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRI 472 (618)
Q Consensus 411 ~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 472 (618)
++++||++++|+++.+|+||+||++|.|++|.|++++++.+...++.+++.++..+++++..
T Consensus 348 ~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (414)
T 3eiq_A 348 QVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLN 409 (414)
T ss_dssp GCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-
T ss_pred CCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChh
Confidence 99999999999999999999999999999999999999999999999999999988887653
No 7
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.6e-51 Score=424.90 Aligned_cols=357 Identities=37% Similarity=0.627 Sum_probs=310.7
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCC-CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeE
Q 007106 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (618)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~-~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~ 176 (618)
..+|+++++++.+++.|++.++..|+|+|+++++.++++ +++++.+|||+|||++++++++..+.. ..+.++
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~-------~~~~~~ 77 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE-------NNGIEA 77 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS-------SSSCCE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc-------cCCCcE
Confidence 346889999999999999999999999999999999988 689999999999999999998876532 236789
Q ss_pred EEEcCcHHHHHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchh
Q 007106 177 LVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (618)
Q Consensus 177 lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEa 254 (618)
||++|+++|+.|+++++.+++. .+.+..++++.....+...+. .++|+|+||++|.+.+......+.++++||+|||
T Consensus 78 lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEa 156 (367)
T 1hv8_A 78 IILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEA 156 (367)
T ss_dssp EEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETH
T ss_pred EEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCc
Confidence 9999999999999999999764 456777777777665555544 6899999999999999888788899999999999
Q ss_pred hhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHH
Q 007106 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334 (618)
Q Consensus 255 H~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 334 (618)
|++.++++...+..++..+++..++++||||+++........++.++..+.... ...+...........+...+
T Consensus 157 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l 230 (367)
T 1hv8_A 157 DEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI------NANIEQSYVEVNENERFEAL 230 (367)
T ss_dssp HHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS------SSSSEEEEEECCGGGHHHHH
T ss_pred hHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC------CCCceEEEEEeChHHHHHHH
Confidence 999999999999999999999999999999999998888888887665554321 12344455555556666666
Q ss_pred HHHHHHhccCCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCcc
Q 007106 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVD 413 (618)
Q Consensus 335 ~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~ 413 (618)
..++. ....++||||++++.++.+++.|.+ .+.+..+|+++++++|+++++.|++++.+|||||+++++|+|+|+++
T Consensus 231 ~~~l~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~ 308 (367)
T 1hv8_A 231 CRLLK--NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLN 308 (367)
T ss_dssp HHHHC--STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCS
T ss_pred HHHHh--cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCC
Confidence 66665 3567999999999999999999976 48899999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCcccCC
Q 007106 414 LIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLP 470 (618)
Q Consensus 414 ~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 470 (618)
+||++++|+++.+|+||+||++|.|+++.|++++++.+...++.+++.++..+++++
T Consensus 309 ~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 309 CVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp EEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC
T ss_pred EEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceec
Confidence 999999999999999999999999999999999999999999999999988877653
No 8
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=4e-51 Score=449.93 Aligned_cols=370 Identities=29% Similarity=0.483 Sum_probs=302.0
Q ss_pred CCCCccCCC----CCHHHHHHHHHcCCCCChHHHHHHHHHHh--CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCC
Q 007106 97 EGLDISKLD----ISQDIVAALARRGISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGR 170 (618)
Q Consensus 97 ~~~~~~~~~----l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~--~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~ 170 (618)
....|+++. ++++++++|...++..|+|+|+++|+.++ .++++|+++|||+|||++|++|++..+...... .
T Consensus 15 ~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~--~ 92 (579)
T 3sqw_A 15 KEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD--S 92 (579)
T ss_dssp CCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--S
T ss_pred CCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc--c
Confidence 334454443 89999999999999999999999999999 678999999999999999999999988763321 1
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHhC------CCCcEEEEEcCcchhhhhHHhh-cCCCEEEEChHHHHHHHHhc-CCC
Q 007106 171 GRNPLCLVLAPTRELAKQVEKEFHESA------PSLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRN-ALN 242 (618)
Q Consensus 171 ~~~~~~lil~Pt~~La~q~~~~l~~~~------~~~~~~~~~g~~~~~~~~~~l~-~~~~Ilv~T~~~l~~~l~~~-~~~ 242 (618)
...+++|||+||++|+.|+++++.+++ +.+.+..++++.........+. ..++|+|+||++|++++... ...
T Consensus 93 ~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~ 172 (579)
T 3sqw_A 93 QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 172 (579)
T ss_dssp TTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccc
Confidence 235689999999999999999998854 3466777888877766666554 47899999999999888764 345
Q ss_pred CCCccEEEEchhhhhccCCcHHHHHHHHHhCC-------CCCcEEEEEecCChHHHHHHHHhccCCceEeeccC--Cccc
Q 007106 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLP-------QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQK 313 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~-------~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~--~~~~ 313 (618)
+.++++|||||||++++++|...+..++..++ ..+|+++||||+++.+..++..++.++..+.+... ....
T Consensus 173 ~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~ 252 (579)
T 3sqw_A 173 FRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPE 252 (579)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCS
T ss_pred cccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccc
Confidence 78899999999999999999999988887763 36799999999999999999988888766544221 1222
Q ss_pred ccCCeEEEEEeccC-cc-hhHHH---HHHHHHhccCCeEEEEecchhHHHHHHHHHHc----cCCccccccCCCHHHHHH
Q 007106 314 LADGISLYSIATSM-YE-KPSII---GQLITEHAKGGKCIVFTQTKRDADRLAHAMAK----SYNCEPLHGDISQSQRER 384 (618)
Q Consensus 314 ~~~~~~~~~~~~~~-~~-k~~~l---~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~ 384 (618)
....+......... .. +...+ ...+.......++||||++++.++.+++.|.+ .+.+..+|++|++.+|.+
T Consensus 253 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~ 332 (579)
T 3sqw_A 253 AHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTS 332 (579)
T ss_dssp SCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHH
T ss_pred cccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHH
Confidence 23334433333332 22 22222 22333334577999999999999999999965 578889999999999999
Q ss_pred HHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCC
Q 007106 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGC 464 (618)
Q Consensus 385 i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 464 (618)
+++.|++++.+|||||+++++|||+|++++||++++|.+++.|+||+||+||.|++|.|++++++.+...++.+++....
T Consensus 333 ~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~ 412 (579)
T 3sqw_A 333 LVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNI 412 (579)
T ss_dssp HHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCC
T ss_pred HHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888766
Q ss_pred Cccc
Q 007106 465 RFTQ 468 (618)
Q Consensus 465 ~~~~ 468 (618)
.+..
T Consensus 413 ~~~~ 416 (579)
T 3sqw_A 413 VIAK 416 (579)
T ss_dssp CCCE
T ss_pred Cccc
Confidence 6543
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.5e-50 Score=425.20 Aligned_cols=366 Identities=28% Similarity=0.472 Sum_probs=303.6
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCC--CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCC
Q 007106 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173 (618)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~--~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~ 173 (618)
....+|+++++++.+++.|.+.++..|+|+|.++++.++++ +++++++|||+|||++|++|++..+.. ....
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~------~~~~ 95 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------ANKY 95 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT------TSCS
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh------cCCC
Confidence 34567899999999999999999999999999999999987 899999999999999999999887633 1235
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHhC---CCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHh-cCCCCCCccEE
Q 007106 174 PLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFV 249 (618)
Q Consensus 174 ~~~lil~Pt~~La~q~~~~l~~~~---~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~-~~~~l~~~~~v 249 (618)
+++||++||++|+.|+++.++++. +.+.+....++...... ....++|+|+||++|.+.+.. ..+.+.++++|
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~i 172 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 172 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEE
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEE
Confidence 689999999999999999888765 34566666665543322 134579999999999998865 45567889999
Q ss_pred EEchhhhhcc-CCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEec-cC
Q 007106 250 VLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT-SM 327 (618)
Q Consensus 250 ViDEaH~~~~-~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~ 327 (618)
||||||++.+ ..+...+..++..++.++|+++||||+++.+..+...++.++..+..... ......+....... ..
T Consensus 173 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 250 (412)
T 3fht_A 173 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE--EETLDTIKQYYVLCSSR 250 (412)
T ss_dssp EEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGG--GSSCTTEEEEEEECSSH
T ss_pred EEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccc--cccccCceEEEEEcCCh
Confidence 9999999987 67888888999999999999999999999999999999988877754322 22233344443333 33
Q ss_pred cchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccC
Q 007106 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406 (618)
Q Consensus 328 ~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~G 406 (618)
..+...+..++... ...++||||++++.++.+++.|.+ .+.+..+|++|++++|+++++.|++++.+|||||+++++|
T Consensus 251 ~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 329 (412)
T 3fht_A 251 DEKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARG 329 (412)
T ss_dssp HHHHHHHHHHHHHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSS
T ss_pred HHHHHHHHHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccC
Confidence 45666666666654 457999999999999999999976 4889999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCC------ChhHHHHhhhccCCCCCcceEEEEecchh-HHHHHHHHHHhCCCcccCCccc
Q 007106 407 LDVPNVDLIIHYELPN------TSETFVHRTGRTGRAGKKGSAILIYTDQQ-ARQVKSIERDVGCRFTQLPRIA 473 (618)
Q Consensus 407 idi~~~~~VI~~~~p~------~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~ 473 (618)
||+|++++||++++|+ +..+|+||+||+||.|+.|.|++++++.+ ...++.+++.++..+++++...
T Consensus 330 idip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 403 (412)
T 3fht_A 330 IDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDD 403 (412)
T ss_dssp CCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC----
T ss_pred CCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCcc
Confidence 9999999999999994 67899999999999999999999998765 7788899999998888876543
No 10
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=6.8e-51 Score=447.91 Aligned_cols=370 Identities=29% Similarity=0.485 Sum_probs=301.0
Q ss_pred CCCCccCCC----CCHHHHHHHHHcCCCCChHHHHHHHHHHh--CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCC
Q 007106 97 EGLDISKLD----ISQDIVAALARRGISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGR 170 (618)
Q Consensus 97 ~~~~~~~~~----l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~--~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~ 170 (618)
...+|+++. +++.+++.|...++..|+|+|.++|+.++ .++++|+++|||+|||++|++|++..+.+.... .
T Consensus 66 ~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~--~ 143 (563)
T 3i5x_A 66 KEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD--S 143 (563)
T ss_dssp CCCCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--S
T ss_pred CCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc--c
Confidence 344555543 99999999999999999999999999999 668999999999999999999999998764322 1
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHhC------CCCcEEEEEcCcchhhhhHHh-hcCCCEEEEChHHHHHHHHhc-CCC
Q 007106 171 GRNPLCLVLAPTRELAKQVEKEFHESA------PSLDTICVYGGTPISHQMRAL-DYGVDAVVGTPGRVIDLIKRN-ALN 242 (618)
Q Consensus 171 ~~~~~~lil~Pt~~La~q~~~~l~~~~------~~~~~~~~~g~~~~~~~~~~l-~~~~~Ilv~T~~~l~~~l~~~-~~~ 242 (618)
...+++|||+||++|+.|+++++++++ +...+..++++.........+ ...++|+|+||++|++++... ...
T Consensus 144 ~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 223 (563)
T 3i5x_A 144 QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 223 (563)
T ss_dssp TTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred cCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccc
Confidence 235689999999999999999998853 245577788887766665555 447899999999999888664 234
Q ss_pred CCCccEEEEchhhhhccCCcHHHHHHHHHhCC-------CCCcEEEEEecCChHHHHHHHHhccCCceEeeccC--Cccc
Q 007106 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLP-------QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQK 313 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~-------~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~--~~~~ 313 (618)
+.++++|||||||++++++|...+..++..++ +.+|+++||||+++.+..+...++.++..+.+... ....
T Consensus 224 ~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (563)
T 3i5x_A 224 FRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPE 303 (563)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCS
T ss_pred cccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCcc
Confidence 78899999999999999999999988887653 37799999999999999999888887766543221 2222
Q ss_pred ccCCeEEEEEeccC-cchh-HHHH---HHHHHhccCCeEEEEecchhHHHHHHHHHHc----cCCccccccCCCHHHHHH
Q 007106 314 LADGISLYSIATSM-YEKP-SIIG---QLITEHAKGGKCIVFTQTKRDADRLAHAMAK----SYNCEPLHGDISQSQRER 384 (618)
Q Consensus 314 ~~~~~~~~~~~~~~-~~k~-~~l~---~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~ 384 (618)
....+......... ..+. ..+. ..+.......++||||++++.++.+++.|.+ .+.+..+|++|++.+|+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~ 383 (563)
T 3i5x_A 304 AHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTS 383 (563)
T ss_dssp SCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHH
T ss_pred ccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHH
Confidence 23333333333322 2221 1222 2333334578999999999999999999965 578899999999999999
Q ss_pred HHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCC
Q 007106 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGC 464 (618)
Q Consensus 385 i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 464 (618)
+++.|++++.+|||||+++++|||+|++++||++++|.++.+|+||+||+||.|++|.|++++++.+...++.+++....
T Consensus 384 ~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~ 463 (563)
T 3i5x_A 384 LVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNI 463 (563)
T ss_dssp HHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCC
T ss_pred HHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888776
Q ss_pred Cccc
Q 007106 465 RFTQ 468 (618)
Q Consensus 465 ~~~~ 468 (618)
.+..
T Consensus 464 ~~~~ 467 (563)
T 3i5x_A 464 VIAK 467 (563)
T ss_dssp CCCE
T ss_pred Cccc
Confidence 6654
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.3e-49 Score=418.39 Aligned_cols=360 Identities=30% Similarity=0.535 Sum_probs=298.1
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCC--CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCe
Q 007106 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (618)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~--~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~ 175 (618)
..+|+++++++.+++.|.+.++..|+|+|+++++.++.+ +++++++|||+|||++|+++++..+.. ...+.+
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~------~~~~~~ 77 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP------EDASPQ 77 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT------TCCSCC
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc------CCCCcc
Confidence 357899999999999999999999999999999999998 899999999999999999999887532 123678
Q ss_pred EEEEcCcHHHHHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEch
Q 007106 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (618)
Q Consensus 176 ~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDE 253 (618)
+||++||++|+.|+++.+.++.. .+.+...+++..... ....++|+|+||++|.+.+......+.++++||+||
T Consensus 78 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 153 (395)
T 3pey_A 78 AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDE 153 (395)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEET
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEC
Confidence 99999999999999999998764 344555554433221 233589999999999999988888899999999999
Q ss_pred hhhhcc-CCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEec-cCcchh
Q 007106 254 ADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT-SMYEKP 331 (618)
Q Consensus 254 aH~~~~-~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~k~ 331 (618)
||++.+ ..+...+..++..++++.|+++||||+++.+..+...++.++..+..... ......+....... ....+.
T Consensus 154 ah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 231 (395)
T 3pey_A 154 ADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTN--EVNVDAIKQLYMDCKNEADKF 231 (395)
T ss_dssp HHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGG--GCSCTTEEEEEEECSSHHHHH
T ss_pred hhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccc--ccccccccEEEEEcCchHHHH
Confidence 999887 56888888999999999999999999999999999888887776654322 22223333333333 334455
Q ss_pred HHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCC
Q 007106 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410 (618)
Q Consensus 332 ~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~ 410 (618)
..+..++... ...++||||++++.++.+++.|.+. +.+..+|++|++++|+++++.|++++.+|||||+++++|||+|
T Consensus 232 ~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 310 (395)
T 3pey_A 232 DVLTELYGLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIP 310 (395)
T ss_dssp HHHHHHHTTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCT
T ss_pred HHHHHHHHhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcc
Confidence 5555555443 4679999999999999999999764 8899999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCC------ChhHHHHhhhccCCCCCcceEEEEecch-hHHHHHHHHHHhC-CCcccCC
Q 007106 411 NVDLIIHYELPN------TSETFVHRTGRTGRAGKKGSAILIYTDQ-QARQVKSIERDVG-CRFTQLP 470 (618)
Q Consensus 411 ~~~~VI~~~~p~------~~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~-~~~~~~~ 470 (618)
++++||++++|+ ++.+|+||+||++|.|+++.|++++.+. +...++.+++.++ ..+..++
T Consensus 311 ~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 378 (395)
T 3pey_A 311 TVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVP 378 (395)
T ss_dssp TEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECC
T ss_pred cCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCC
Confidence 999999999999 9999999999999999999999999865 4556677777776 5555444
No 12
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.1e-51 Score=434.12 Aligned_cols=365 Identities=32% Similarity=0.554 Sum_probs=179.0
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeE
Q 007106 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~ 176 (618)
....|+++++++.+.+.|...++.+|+|+|+++++.+++++++++++|||+|||++|++|++..+.. ...++++
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~------~~~~~~~ 92 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------SVKAPQA 92 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT------TCCSCCE
T ss_pred ccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc------cCCCCCE
Confidence 3456889999999999999999999999999999999999999999999999999999999887632 1236789
Q ss_pred EEEcCcHHHHHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchh
Q 007106 177 LVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (618)
Q Consensus 177 lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEa 254 (618)
||++|+++|+.|+++++.++.. ++.+..++++.........+. .++|+|+||++|.+.+....+.+.++++||+|||
T Consensus 93 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEa 171 (394)
T 1fuu_A 93 LMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEA 171 (394)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred EEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEECh
Confidence 9999999999999999998865 466777788777655554444 5799999999999999888888889999999999
Q ss_pred hhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEe-ccCcchhHH
Q 007106 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA-TSMYEKPSI 333 (618)
Q Consensus 255 H~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~k~~~ 333 (618)
|++.++++...+..++..+++..|+++||||+++.+......++.++..+....... ....+...... .....+...
T Consensus 172 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 249 (394)
T 1fuu_A 172 DEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDEL--TLEGIKQFYVNVEEEEYKYEC 249 (394)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC--------------------------
T ss_pred HHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccc--cCCCceEEEEEcCchhhHHHH
Confidence 999998899999999999999999999999999999898888888887765432211 11122222222 222234555
Q ss_pred HHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCc
Q 007106 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (618)
Q Consensus 334 l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~ 412 (618)
+..+++.. ...++||||++++.++.+++.|.+. +.+..+|+++++++|+++++.|++++.+|||||+++++|+|+|++
T Consensus 250 l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~ 328 (394)
T 1fuu_A 250 LTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQV 328 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccC
Confidence 55555544 4569999999999999999999654 789999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCcccCCc
Q 007106 413 DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPR 471 (618)
Q Consensus 413 ~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 471 (618)
++||++++|+++..|+||+||++|.|++|.|++++++.+...++.+++.++..++.++.
T Consensus 329 ~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 387 (394)
T 1fuu_A 329 SLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPS 387 (394)
T ss_dssp -----------------------------------------------------------
T ss_pred CEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCc
Confidence 99999999999999999999999999999999999999999999999888888777664
No 13
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=9.1e-49 Score=402.71 Aligned_cols=333 Identities=33% Similarity=0.581 Sum_probs=281.2
Q ss_pred CCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHH
Q 007106 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (618)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~L 185 (618)
+++++.+.|++.++..|+|+|+++++.+++++++++.+|||+|||++|+++++.. +.++||++|+++|
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------------~~~~liv~P~~~L 68 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------------GMKSLVVTPTREL 68 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------------TCCEEEECSSHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------------cCCEEEEeCCHHH
Confidence 5789999999999999999999999999999999999999999999999988764 5679999999999
Q ss_pred HHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcH
Q 007106 186 AKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263 (618)
Q Consensus 186 a~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~ 263 (618)
+.||+++++++.. ++.+..++++.....+...+. .++|+|+||++|.+.+....+.+.++++||+||||++.++++.
T Consensus 69 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~ 147 (337)
T 2z0m_A 69 TRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFI 147 (337)
T ss_dssp HHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCH
T ss_pred HHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccH
Confidence 9999999998764 456777788777665555544 3899999999999998887777889999999999999999999
Q ss_pred HHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHHhcc
Q 007106 264 EDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343 (618)
Q Consensus 264 ~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~ 343 (618)
..+..++..++...++++||||+++.+......++.++..+... .....+...........+. ....+.. ..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~ 219 (337)
T 2z0m_A 148 DDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC-----IGLANVEHKFVHVKDDWRS--KVQALRE-NK 219 (337)
T ss_dssp HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS-----GGGGGEEEEEEECSSSSHH--HHHHHHT-CC
T ss_pred HHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc-----cccCCceEEEEEeChHHHH--HHHHHHh-CC
Confidence 99999999999999999999999999999988888877665332 1122233333333333222 2233333 35
Q ss_pred CCeEEEEecchhHHHHHHHHHHccCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCCCC
Q 007106 344 GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNT 423 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~ 423 (618)
..++||||++++.++.+++.|. .+..+|++++..+|+++++.|++++.+|||||+++++|+|+|++++||++++|++
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l~---~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s 296 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLFD---NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQD 296 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTCT---TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSS
T ss_pred CCcEEEEEcCHHHHHHHHHHhh---hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCC
Confidence 6799999999999999998885 5788999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhC
Q 007106 424 SETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVG 463 (618)
Q Consensus 424 ~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~ 463 (618)
+.+|+||+||++|.|+++.|++++. .+...++.+++.++
T Consensus 297 ~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 297 LRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp HHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred HHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 9999999999999999999999999 77777877766554
No 14
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2.3e-50 Score=434.67 Aligned_cols=364 Identities=28% Similarity=0.479 Sum_probs=168.9
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCC--CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007106 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~--~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~ 174 (618)
+..+|+++++++.+++.|+..+|..|+|+|.++++.++.+ +++|+++|||||||++|++|++..+.. ....+
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~------~~~~~ 163 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------ANKYP 163 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT------TSCSC
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh------cCCCC
Confidence 3457899999999999999999999999999999999987 899999999999999999999877633 12355
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhC---CCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHh-cCCCCCCccEEE
Q 007106 175 LCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVV 250 (618)
Q Consensus 175 ~~lil~Pt~~La~q~~~~l~~~~---~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~-~~~~l~~~~~vV 250 (618)
++|||+||++|+.|+++.+.++. +.+.+.+..++...... ....++|+|+||++|++++.. ..+.+.++++||
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iV 240 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 240 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEE
T ss_pred cEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEE
Confidence 89999999999999988877654 45666666655543322 133578999999999998865 345678999999
Q ss_pred Echhhhhcc-CCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEE-eccCc
Q 007106 251 LDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI-ATSMY 328 (618)
Q Consensus 251 iDEaH~~~~-~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~ 328 (618)
|||+|++.+ ..+...+..++..++.++|+|+||||+++.+..+...++.++..+.+.... .....+.+... .....
T Consensus 241 iDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~ 318 (479)
T 3fmp_B 241 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREE--ETLDTIKQYYVLCSSRD 318 (479)
T ss_dssp ECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------------------
T ss_pred EECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccc--cCcCCceEEEEEeCCHH
Confidence 999999987 567888888888888999999999999999999999999888777653322 11222222222 22233
Q ss_pred chhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCC
Q 007106 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGL 407 (618)
Q Consensus 329 ~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gi 407 (618)
.+...+..++... ...++||||++++.++.+++.|.+. +.+..+|++|++.+|+.+++.|++|+.+|||||+++++||
T Consensus 319 ~~~~~l~~~~~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~Gl 397 (479)
T 3fmp_B 319 EKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGI 397 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCC
Confidence 4555555555443 3568999999999999999999664 7899999999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCC------ChhHHHHhhhccCCCCCcceEEEEecchh-HHHHHHHHHHhCCCcccCCcc
Q 007106 408 DVPNVDLIIHYELPN------TSETFVHRTGRTGRAGKKGSAILIYTDQQ-ARQVKSIERDVGCRFTQLPRI 472 (618)
Q Consensus 408 di~~~~~VI~~~~p~------~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~ 472 (618)
|+|++++||++|+|. +..+|+||+||+||.|++|.|++++++.+ ...++.+++.++..+..++..
T Consensus 398 Dip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 469 (479)
T 3fmp_B 398 DVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTD 469 (479)
T ss_dssp ------------------------------------------------------------------------
T ss_pred ccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCc
Confidence 999999999999995 66899999999999999999999998765 667788888888777766543
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=6.3e-48 Score=420.68 Aligned_cols=338 Identities=18% Similarity=0.312 Sum_probs=270.9
Q ss_pred cCCCCCHHHHHHHHH-cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEc
Q 007106 102 SKLDISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA 180 (618)
Q Consensus 102 ~~~~l~~~l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~ 180 (618)
.++++++++.+.|++ .++..|+|+|+++|+.+++++++|+.+|||+|||++|++|++.. ..++|||+
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------------~g~~lVis 91 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------------DGFTLVIC 91 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS------------SSEEEEEC
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc------------CCcEEEEe
Confidence 457889999999988 69999999999999999999999999999999999999998753 45899999
Q ss_pred CcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHh------hcCCCEEEEChHHHH------HHHHhcCCCCCCccE
Q 007106 181 PTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL------DYGVDAVVGTPGRVI------DLIKRNALNLSEVQF 248 (618)
Q Consensus 181 Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l------~~~~~Ilv~T~~~l~------~~l~~~~~~l~~~~~ 248 (618)
|+++|+.|+++.+.++ ++.+..++++.........+ ...++|+|+||++|. +.+.. ...+.++++
T Consensus 92 P~~~L~~q~~~~l~~~--gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i~~ 168 (591)
T 2v1x_A 92 PLISLMEDQLMVLKQL--GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRFTR 168 (591)
T ss_dssp SCHHHHHHHHHHHHHH--TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCEEE
T ss_pred CHHHHHHHHHHHHHhc--CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCCcE
Confidence 9999999999999998 57777878777655443221 346899999999874 22222 234678999
Q ss_pred EEEchhhhhccCC--cHHHHHH--HHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEe
Q 007106 249 VVLDEADQMLSVG--FAEDVEV--ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA 324 (618)
Q Consensus 249 vViDEaH~~~~~~--~~~~~~~--il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~ 324 (618)
|||||||++.+|+ |.+.+.. ++....++.++|+||||+++.+...+..++..+....+..... ...+. +.+.
T Consensus 169 iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~---r~nl~-~~v~ 244 (591)
T 2v1x_A 169 IAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFN---RPNLY-YEVR 244 (591)
T ss_dssp EEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCC---CTTEE-EEEE
T ss_pred EEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCC---CcccE-EEEE
Confidence 9999999999876 6555544 3444446799999999999998888888776554443322111 11222 2222
Q ss_pred ccCcchh---HHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCCccEEEEc
Q 007106 325 TSMYEKP---SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400 (618)
Q Consensus 325 ~~~~~k~---~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT 400 (618)
.....+. ..+..++....++.++||||++++.++.+++.|.+ .+.+..+|++|++++|+++++.|++++.+|||||
T Consensus 245 ~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT 324 (591)
T 2v1x_A 245 QKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT 324 (591)
T ss_dssp ECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEEC
T ss_pred eCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 2222223 33444444333578999999999999999999975 4889999999999999999999999999999999
Q ss_pred cccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHH
Q 007106 401 DVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458 (618)
Q Consensus 401 ~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 458 (618)
+++++|||+|++++||++++|.+++.|+|++||+||.|+++.|++++.+.|...+..+
T Consensus 325 ~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 325 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp TTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred chhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998887665544
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=7.9e-47 Score=408.19 Aligned_cols=338 Identities=20% Similarity=0.348 Sum_probs=270.6
Q ss_pred CCccCCCCCHHHHHHHHH-cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEE
Q 007106 99 LDISKLDISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (618)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~l 177 (618)
.+|+++++++++.+.|++ .++..|+|+|.++|+.+++++++++.+|||+|||++|++|++.. ...+|
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------------~g~~l 69 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------------NGLTV 69 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------------SSEEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------------CCCEE
Confidence 368899999999999988 79999999999999999999999999999999999999998743 45799
Q ss_pred EEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhH----HhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEch
Q 007106 178 VLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR----ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (618)
Q Consensus 178 il~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~----~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDE 253 (618)
||+|+++|+.|+.+.+.++ ++.+..+++......... .....++|+|+||++|........+...++++|||||
T Consensus 70 vi~P~~aL~~q~~~~l~~~--gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDE 147 (523)
T 1oyw_A 70 VVSPLISLMKDQVDQLQAN--GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDE 147 (523)
T ss_dssp EECSCHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESS
T ss_pred EECChHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeC
Confidence 9999999999999999986 467777777665444322 2234589999999999533222223457899999999
Q ss_pred hhhhccCC--cHHHHHH---HHHhCCCCCcEEEEEecCChHHHHHHHHhcc--CCceEeeccCCcccccCCeEEEEEecc
Q 007106 254 ADQMLSVG--FAEDVEV---ILERLPQNRQSMMFSATMPPWIRSLTNKYLK--NPLTVDLVGDSDQKLADGISLYSIATS 326 (618)
Q Consensus 254 aH~~~~~~--~~~~~~~---il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~--~~~~i~~~~~~~~~~~~~~~~~~~~~~ 326 (618)
||++.+++ |...+.. +...+ ++.++++||||+++.+...+...+. ++..+ .. ... ..++.. ....
T Consensus 148 aH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~-~~~---r~~l~~--~v~~ 219 (523)
T 1oyw_A 148 AHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-IS-SFD---RPNIRY--MLME 219 (523)
T ss_dssp GGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-EC-CCC---CTTEEE--EEEE
T ss_pred ccccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eC-CCC---CCceEE--EEEe
Confidence 99999876 5554443 34444 4689999999999987765555443 33222 21 111 112222 2222
Q ss_pred CcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCCccEEEEcccccc
Q 007106 327 MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAAR 405 (618)
Q Consensus 327 ~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~ 405 (618)
...+...+..++... ++.++||||++++.++.+++.|.+ .+.+..+|++|++++|+++++.|++++.+|||||+++++
T Consensus 220 ~~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~ 298 (523)
T 1oyw_A 220 KFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGM 298 (523)
T ss_dssp CSSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCT
T ss_pred CCCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhC
Confidence 345556666666654 567999999999999999999976 488999999999999999999999999999999999999
Q ss_pred CCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHH
Q 007106 406 GLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459 (618)
Q Consensus 406 Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~ 459 (618)
|||+|++++||++++|.+++.|+||+||+||.|+++.|++++++.|...++.+.
T Consensus 299 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~ 352 (523)
T 1oyw_A 299 GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (523)
T ss_dssp TTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHH
T ss_pred CCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998877665543
No 17
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.6e-48 Score=418.01 Aligned_cols=366 Identities=28% Similarity=0.458 Sum_probs=252.2
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCC--CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCe
Q 007106 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (618)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~--~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~ 175 (618)
...+...++++.+.+.|.+.++..|+++|+++++.++++ +++|+++|||+|||++|+++++..+.+ ....++
T Consensus 118 l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~------~~~~~~ 191 (508)
T 3fho_A 118 XXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDA------SVPKPQ 191 (508)
T ss_dssp ---------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCT------TCCSCC
T ss_pred cccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHh------CCCCce
Confidence 344566778899999999999999999999999999998 899999999999999999999987633 123568
Q ss_pred EEEEcCcHHHHHHHHHHHHHhCCCCcE--EEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEch
Q 007106 176 CLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (618)
Q Consensus 176 ~lil~Pt~~La~q~~~~l~~~~~~~~~--~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDE 253 (618)
+||++|+++|+.|+++++++++....+ ....+.... ......++|+|+||++|.+.+....+.+.++++|||||
T Consensus 192 vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDE 267 (508)
T 3fho_A 192 AICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVP----KGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDE 267 (508)
T ss_dssp EEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECC
T ss_pred EEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccc----ccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEec
Confidence 999999999999999999998764433 222222221 11223689999999999999988888899999999999
Q ss_pred hhhhcc-CCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhH
Q 007106 254 ADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332 (618)
Q Consensus 254 aH~~~~-~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 332 (618)
||++.+ ..+...+..++..++++.|+|+||||+++.+..+...++.++..+.+...... .......+........+..
T Consensus 268 aH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~k~~ 346 (508)
T 3fho_A 268 ADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELS-VEGIKQLYMDCQSEEHKYN 346 (508)
T ss_dssp HHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC-----CCCCEEEEC--CHHHHH
T ss_pred hhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCC-cccceEEEEECCchHHHHH
Confidence 999987 56889999999999999999999999999999999988888776654322211 1111122222223344555
Q ss_pred HHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCC
Q 007106 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN 411 (618)
Q Consensus 333 ~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~ 411 (618)
.+..++... ...++||||++++.++.+++.|.+. +.+..+|+++++.+|+.+++.|++|+.+|||||+++++|||+|+
T Consensus 347 ~l~~ll~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~ 425 (508)
T 3fho_A 347 VLVELYGLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQ 425 (508)
T ss_dssp HHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTT
T ss_pred HHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccC
Confidence 555555544 4579999999999999999999664 78999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCC------CChhHHHHhhhccCCCCCcceEEEEecc-hhHHHHHHHHHHhCCCcccCCccccc
Q 007106 412 VDLIIHYELP------NTSETFVHRTGRTGRAGKKGSAILIYTD-QQARQVKSIERDVGCRFTQLPRIAVE 475 (618)
Q Consensus 412 ~~~VI~~~~p------~~~~~~~Qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~ 475 (618)
+++||++++| .++..|+||+||+||.|++|.|++++.+ .+...++.+++.++..++.++....+
T Consensus 426 v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~ 496 (508)
T 3fho_A 426 VNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDDYE 496 (508)
T ss_dssp CCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC--------
T ss_pred CCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCccHH
Confidence 9999999999 7899999999999999999999999984 55667888888998888887754433
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.3e-45 Score=390.29 Aligned_cols=326 Identities=20% Similarity=0.292 Sum_probs=256.1
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHH
Q 007106 108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (618)
Q Consensus 108 ~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (618)
+++.+.|++....+|+|+|+++++.+++++++++++|||+|||++|+++++..+. .++++||++||++|+.
T Consensus 8 ~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~---------~~~~~lil~Pt~~L~~ 78 (414)
T 3oiy_A 8 EDFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---------KGKKSALVFPTVTLVK 78 (414)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT---------TTCCEEEEESSHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc---------CCCEEEEEECCHHHHH
Confidence 3455666664445799999999999999999999999999999999888877652 2678999999999999
Q ss_pred HHHHHHHHhCC-CCcEEEEEcCcch---hhhhHHhhcC-CCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhcc---
Q 007106 188 QVEKEFHESAP-SLDTICVYGGTPI---SHQMRALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS--- 259 (618)
Q Consensus 188 q~~~~l~~~~~-~~~~~~~~g~~~~---~~~~~~l~~~-~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~--- 259 (618)
|+++.++++.. ++++..++++... ..+...+..+ ++|+|+||++|.+.+.. +.+.++++|||||||++.+
T Consensus 79 q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~ 156 (414)
T 3oiy_A 79 QTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASR 156 (414)
T ss_dssp HHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHH
T ss_pred HHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccc
Confidence 99999999875 6788888888876 4444555555 99999999999887765 5577999999999997653
Q ss_pred --------CCcHHH-HHHHHHhCC-----------CCCcEEEEEec-CChHHH-HHHHHhccCCceEeeccCCcccccCC
Q 007106 260 --------VGFAED-VEVILERLP-----------QNRQSMMFSAT-MPPWIR-SLTNKYLKNPLTVDLVGDSDQKLADG 317 (618)
Q Consensus 260 --------~~~~~~-~~~il~~l~-----------~~~~~l~lSAT-~~~~~~-~~~~~~l~~~~~i~~~~~~~~~~~~~ 317 (618)
++|... +..++..++ ...|++++||| +|+.+. .+...++. +.. .........
T Consensus 157 ~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~ 230 (414)
T 3oiy_A 157 NIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTV--GRLVSVARN 230 (414)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCS--SCCCCCCCS
T ss_pred hhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCc--Ccccccccc
Confidence 556666 788888776 78999999999 554433 22222222 111 111112223
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHc-cCCcc-ccccCCCHHHHHHHHHHHhcCCcc
Q 007106 318 ISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCE-PLHGDISQSQRERTLSAFRDGRFN 395 (618)
Q Consensus 318 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~-~lhg~~~~~~r~~i~~~f~~g~~~ 395 (618)
+....... .+...+..+++.. +.++||||++++.++.+++.|.+ .+.+. .+|+. +|+ ++.|++|+++
T Consensus 231 i~~~~~~~---~~~~~l~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~ 299 (414)
T 3oiy_A 231 ITHVRISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKIN 299 (414)
T ss_dssp EEEEEESS---CCHHHHHHHHHHH--CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCS
T ss_pred chheeecc---CHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCe
Confidence 33333322 4566677777763 47999999999999999999976 48887 89985 444 9999999999
Q ss_pred EEEE----ccccccCCCCCC-ccEEEEcCCC--CChhHHHHhhhccCCCC----CcceEEEEecchhHHHHHHHHHHhC
Q 007106 396 ILIA----TDVAARGLDVPN-VDLIIHYELP--NTSETFVHRTGRTGRAG----KKGSAILIYTDQQARQVKSIERDVG 463 (618)
Q Consensus 396 vLVa----T~~~~~Gidi~~-~~~VI~~~~p--~~~~~~~Qr~GR~gR~g----~~g~~~~~~~~~~~~~~~~l~~~l~ 463 (618)
|||| |+++++|||+|+ +++||++++| .++.+|+||+||+||.| ++|.|++++ .+...++.+++.++
T Consensus 300 vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 300 ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp EEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred EEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 9999 999999999999 9999999999 99999999999999987 589999998 55666777777666
No 19
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.2e-46 Score=418.57 Aligned_cols=378 Identities=19% Similarity=0.275 Sum_probs=278.6
Q ss_pred CCCCCCCccccccCCccccccccccCCCCccchhHHhhhhhccccccccCCCCCCCCCCccCCCCCHHHHH-HHHHcCCC
Q 007106 42 PVIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVA-ALARRGIS 120 (618)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~~ 120 (618)
.+++...++..+|+|+..+.+..+++++.|++...++.........+..... . .+..+..+.+ .+...+|
T Consensus 297 ~l~~~~~al~~iH~P~~~~~~~~a~~rl~~eEl~~~ql~l~~~r~~~~~~~~-----~---~~~~~~~~~~~~~~~lpf- 367 (780)
T 1gm5_A 297 KLLGVKDAYYGMHFPKTFYHLEKARERLAYEELFVLQLAFQKIRKEREKHGG-----I---PKKIEGKLAEEFIKSLPF- 367 (780)
T ss_dssp CCCCSHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----C---CCCCCTHHHHHHHHHSSS-
T ss_pred CCCcHHHHHHhCCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccC-----C---CCCCchHHHHHHHHhCCC-
Confidence 3667899999999999999998899999999999988764332222211111 1 1222334444 4466777
Q ss_pred CChHHHHHHHHHHhCC------CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007106 121 KLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~------~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~ 194 (618)
+||++|+++++.++++ +++|++++||||||++|++|++..+.+ +.+++|++||++|+.|+++.+.
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---------g~qvlvlaPtr~La~Q~~~~l~ 438 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---------GFQTAFMVPTSILAIQHYRRTV 438 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---------TSCEEEECSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---------CCeEEEEeCcHHHHHHHHHHHH
Confidence 8999999999998875 589999999999999999999988755 6789999999999999999999
Q ss_pred HhCC--CCcEEEEEcCcchhhhhH---Hhhc-CCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHH
Q 007106 195 ESAP--SLDTICVYGGTPISHQMR---ALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268 (618)
Q Consensus 195 ~~~~--~~~~~~~~g~~~~~~~~~---~l~~-~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~ 268 (618)
+++. ++++.+++++.....+.. .+.. .++|+|+||+.|.+ .+.+.++++|||||+|++. .....
T Consensus 439 ~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g-----~~qr~ 508 (780)
T 1gm5_A 439 ESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFG-----VKQRE 508 (780)
T ss_dssp HHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC----------C
T ss_pred HHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhh-----HHHHH
Confidence 9876 577888888877655433 2333 48999999987743 4568899999999999952 22222
Q ss_pred HHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHHhccCCeEE
Q 007106 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCI 348 (618)
Q Consensus 269 il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~l 348 (618)
.+.....++++++|||||++....+. ++.+.... .+...... ...+.. ..........++..+.+....+.+++
T Consensus 509 ~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s-~i~~~p~~-r~~i~~--~~~~~~~~~~l~~~i~~~l~~g~qvl 582 (780)
T 1gm5_A 509 ALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVT-VIDEMPPG-RKEVQT--MLVPMDRVNEVYEFVRQEVMRGGQAF 582 (780)
T ss_dssp CCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCE-EECCCCSS-CCCCEE--CCCCSSTHHHHHHHHHHHTTTSCCBC
T ss_pred HHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCccee-eeeccCCC-CcceEE--EEeccchHHHHHHHHHHHHhcCCcEE
Confidence 23333457899999999987654433 23222211 11111110 111221 12222333344444445556678999
Q ss_pred EEecchh--------HHHHHHHHHHc----cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEE
Q 007106 349 VFTQTKR--------DADRLAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLII 416 (618)
Q Consensus 349 Vf~~~~~--------~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI 416 (618)
|||++++ .++.+++.|.+ .+.+..+||+|++++|+++++.|++|+++|||||+++++|||+|++++||
T Consensus 583 Vf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VI 662 (780)
T 1gm5_A 583 IVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMV 662 (780)
T ss_dssp CBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEE
T ss_pred EEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEE
Confidence 9999764 46778888876 36789999999999999999999999999999999999999999999999
Q ss_pred EcCCCC-ChhHHHHhhhccCCCCCcceEEEEecchhHH
Q 007106 417 HYELPN-TSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453 (618)
Q Consensus 417 ~~~~p~-~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 453 (618)
++++|+ +..+|+||+||+||.+++|.|++++.+.+..
T Consensus 663 i~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~ 700 (780)
T 1gm5_A 663 IENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEE 700 (780)
T ss_dssp BCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHH
T ss_pred EeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChH
Confidence 999996 7899999999999999999999999843333
No 20
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=6.1e-44 Score=402.48 Aligned_cols=347 Identities=20% Similarity=0.301 Sum_probs=270.4
Q ss_pred CccCCCCCHHHHHHHHHcCCCCChHHHHHHHHH-HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEE
Q 007106 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (618)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~-i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~li 178 (618)
.|+++++++.+.+.|++.++.+|+|+|.++++. +.+++++++++|||||||+++.++++..+... +.++||
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--------~~~~l~ 73 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--------GGKAVY 73 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--------CSEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--------CCEEEE
Confidence 578899999999999999999999999999998 88899999999999999999999999887631 568999
Q ss_pred EcCcHHHHHHHHHHHHHhCC-CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhh
Q 007106 179 LAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (618)
Q Consensus 179 l~Pt~~La~q~~~~l~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~ 257 (618)
++|+++|+.|++++++++.+ ++++..++|....... ....++|+|+||++|..++......+.++++|||||+|++
T Consensus 74 i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 150 (720)
T 2zj8_A 74 IVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLI 150 (720)
T ss_dssp ECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGG
T ss_pred EcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCccc
Confidence 99999999999999975433 5677788876554332 1235899999999999988886666889999999999999
Q ss_pred ccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEE-----EEEec----cCc
Q 007106 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL-----YSIAT----SMY 328 (618)
Q Consensus 258 ~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~-----~~~~~----~~~ 328 (618)
.++.+...++.++..++.+.|+|+||||+++. ..+..++..+. +.. ........... ..... ...
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~--~~~~~~l~~~~-~~~---~~rp~~l~~~~~~~~~~~~~~~~~~~~~ 224 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGNP--EELAEWLNAEL-IVS---DWRPVKLRRGVFYQGFVTWEDGSIDRFS 224 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSCH--HHHHHHTTEEE-EEC---CCCSSEEEEEEEETTEEEETTSCEEECS
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCCH--HHHHHHhCCcc-cCC---CCCCCcceEEEEeCCeeeccccchhhhh
Confidence 98889999999999988789999999999862 33334443211 110 00000000000 00100 022
Q ss_pred chhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc----------------------------------CCccccc
Q 007106 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS----------------------------------YNCEPLH 374 (618)
Q Consensus 329 ~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----------------------------------~~~~~lh 374 (618)
.+...+.+.+ .+++++||||+++++++.+++.|.+. ..+..+|
T Consensus 225 ~~~~~~~~~~---~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h 301 (720)
T 2zj8_A 225 SWEELVYDAI---RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHH 301 (720)
T ss_dssp STTHHHHHHH---HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEEC
T ss_pred HHHHHHHHHH---hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeec
Confidence 3333444333 35689999999999999999988642 1377899
Q ss_pred cCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEE----cC----CCCChhHHHHhhhccCCCC--CcceEE
Q 007106 375 GDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH----YE----LPNTSETFVHRTGRTGRAG--KKGSAI 444 (618)
Q Consensus 375 g~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~----~~----~p~~~~~~~Qr~GR~gR~g--~~g~~~ 444 (618)
++|++++|+.+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.+ ..|.|+
T Consensus 302 ~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~ 381 (720)
T 2zj8_A 302 AGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGI 381 (720)
T ss_dssp TTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEE
Confidence 9999999999999999999999999999999999999999998 76 5889999999999999987 578999
Q ss_pred EEecchhHHHHHHHHHHhCCCccc
Q 007106 445 LIYTDQQARQVKSIERDVGCRFTQ 468 (618)
Q Consensus 445 ~~~~~~~~~~~~~l~~~l~~~~~~ 468 (618)
+++++.+.. ..+++.+....++
T Consensus 382 ~l~~~~~~~--~~~~~~~~~~~~~ 403 (720)
T 2zj8_A 382 IVSTSDDPR--EVMNHYIFGKPEK 403 (720)
T ss_dssp EECSSSCHH--HHHHHHTTSCCCC
T ss_pred EEecCccHH--HHHHHHhcCCCCC
Confidence 999987732 2233444443333
No 21
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.3e-43 Score=396.70 Aligned_cols=339 Identities=22% Similarity=0.345 Sum_probs=260.2
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHH-HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeE
Q 007106 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (618)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~-i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~ 176 (618)
..+|+++++++.+.+.|++.++.+|+|+|.++++. +.+++++|+++|||||||+++.++++..+.. .+.++
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~i 78 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK--------NGGKA 78 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH--------SCSEE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH--------CCCeE
Confidence 35788999999999999999999999999999999 7888999999999999999999999988753 15689
Q ss_pred EEEcCcHHHHHHHHHHHHHhCC-CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhh
Q 007106 177 LVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (618)
Q Consensus 177 lil~Pt~~La~q~~~~l~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH 255 (618)
+|++|+++|+.|++++++++.. ++++..++|....... .+ ..++|+|+||++|...+......+.++++|||||+|
T Consensus 79 l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 155 (715)
T 2va8_A 79 IYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELH 155 (715)
T ss_dssp EEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGG
T ss_pred EEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechh
Confidence 9999999999999999965432 4667777776554332 12 368999999999999888876668899999999999
Q ss_pred hhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCC--------eEEEEEeccC
Q 007106 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADG--------ISLYSIATSM 327 (618)
Q Consensus 256 ~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~--------~~~~~~~~~~ 327 (618)
++.+..+...++.++.+++ +.++|+||||+++. .. ...++..+. +...... ..+... ..........
T Consensus 156 ~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~-~~-~~~~l~~~~-~~~~~r~-~~l~~~~~~~~~~~~~~~~~~~~~ 230 (715)
T 2va8_A 156 YLNDPERGPVVESVTIRAK-RRNLLALSATISNY-KQ-IAKWLGAEP-VATNWRP-VPLIEGVIYPERKKKEYNVIFKDN 230 (715)
T ss_dssp GGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTTH-HH-HHHHHTCEE-EECCCCS-SCEEEEEEEECSSTTEEEEEETTS
T ss_pred hcCCcccchHHHHHHHhcc-cCcEEEEcCCCCCH-HH-HHHHhCCCc-cCCCCCC-CCceEEEEecCCcccceeeecCcc
Confidence 9988788889999888886 89999999999862 33 334443221 1100000 000000 0000000000
Q ss_pred -----cchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-----------------------------------
Q 007106 328 -----YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS----------------------------------- 367 (618)
Q Consensus 328 -----~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----------------------------------- 367 (618)
......+..+.+...+++++||||+++++++.+++.|.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 310 (715)
T 2va8_A 231 TTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSL 310 (715)
T ss_dssp CEEEEESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHH
T ss_pred hhhhcccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHH
Confidence 0012233333344456789999999999999999988653
Q ss_pred --CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEE----cC-------CCCChhHHHHhhhcc
Q 007106 368 --YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH----YE-------LPNTSETFVHRTGRT 434 (618)
Q Consensus 368 --~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~----~~-------~p~~~~~~~Qr~GR~ 434 (618)
..+..+|++|++++|+.+++.|++|+++|||||+++++|||+|++++||+ || .|.+..+|+||+|||
T Consensus 311 ~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRa 390 (715)
T 2va8_A 311 ISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRA 390 (715)
T ss_dssp HTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTB
T ss_pred HhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhc
Confidence 23778999999999999999999999999999999999999999999999 88 789999999999999
Q ss_pred CCCC--CcceEEEEecchhH
Q 007106 435 GRAG--KKGSAILIYTDQQA 452 (618)
Q Consensus 435 gR~g--~~g~~~~~~~~~~~ 452 (618)
||.+ ..|.|++++++.+.
T Consensus 391 GR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 391 GRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp CCTTTCSCEEEEEECSCGGG
T ss_pred CCCCCCCCceEEEEeCCchH
Confidence 9987 47899999987653
No 22
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=3.9e-44 Score=402.95 Aligned_cols=337 Identities=23% Similarity=0.322 Sum_probs=258.9
Q ss_pred CccCCC--CCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEE
Q 007106 100 DISKLD--ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (618)
Q Consensus 100 ~~~~~~--l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~l 177 (618)
+|++++ +++.+.+.|++.++.+|+|+|.++++.+.+++++++++|||||||+++.++++..+.+ +.++|
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---------~~~~l 72 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---------GGKSL 72 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---------TCCEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---------CCcEE
Confidence 467777 8999999999999999999999999999999999999999999999999999988654 56899
Q ss_pred EEcCcHHHHHHHHHHHHHhCC-CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhh
Q 007106 178 VLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (618)
Q Consensus 178 il~Pt~~La~q~~~~l~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~ 256 (618)
|++|+++|+.|++++++++.+ ++++..++|....... ....++|+|+||++|...+......+.++++|||||+|+
T Consensus 73 ~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 73 YVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHL 149 (702)
T ss_dssp EEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGG
T ss_pred EEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeee
Confidence 999999999999999965433 4677777776654332 123689999999999998888666688999999999999
Q ss_pred hccCCcHHHHHHHHHhC---CCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcc-c--ccCCeEEEEEeccCc--
Q 007106 257 MLSVGFAEDVEVILERL---PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ-K--LADGISLYSIATSMY-- 328 (618)
Q Consensus 257 ~~~~~~~~~~~~il~~l---~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~-~--~~~~~~~~~~~~~~~-- 328 (618)
+.++.+...++.++..+ .++.|+|+||||+++ ... ...++..+. +........ . ........ ......
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~-~~~~l~~~~-~~~~~r~~~l~~~~~~~~~~~-~~~~~~~~ 225 (702)
T 2p6r_A 150 LDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTE-IAEWLDADY-YVSDWRPVPLVEGVLCEGTLE-LFDGAFST 225 (702)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHH-HHHHTTCEE-EECCCCSSCEEEEEECSSEEE-EEETTEEE
T ss_pred cCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHH-HHHHhCCCc-ccCCCCCccceEEEeeCCeee-ccCcchhh
Confidence 99888888888887666 578999999999986 233 334444221 111000000 0 00000001 111000
Q ss_pred -chhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-------------------------------CCccccccC
Q 007106 329 -EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-------------------------------YNCEPLHGD 376 (618)
Q Consensus 329 -~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-------------------------------~~~~~lhg~ 376 (618)
.....+..+.+...+++++||||+++++++.+++.|.+. ..+..+|++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~ 305 (702)
T 2p6r_A 226 SRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAG 305 (702)
T ss_dssp EEECCHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTT
T ss_pred hhhhhHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCC
Confidence 101122223333346789999999999999999888542 357789999
Q ss_pred CCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEE----cC---CCCChhHHHHhhhccCCCC--CcceEEEEe
Q 007106 377 ISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH----YE---LPNTSETFVHRTGRTGRAG--KKGSAILIY 447 (618)
Q Consensus 377 ~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~----~~---~p~~~~~~~Qr~GR~gR~g--~~g~~~~~~ 447 (618)
|++++|+.+++.|++|+++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.+ ..|.|++++
T Consensus 306 l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~ 385 (702)
T 2p6r_A 306 LLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIV 385 (702)
T ss_dssp SCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEe
Confidence 99999999999999999999999999999999999999998 66 6889999999999999987 578999999
Q ss_pred cchhH
Q 007106 448 TDQQA 452 (618)
Q Consensus 448 ~~~~~ 452 (618)
++.+.
T Consensus 386 ~~~~~ 390 (702)
T 2p6r_A 386 GKRDR 390 (702)
T ss_dssp CGGGH
T ss_pred cCccH
Confidence 98773
No 23
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.9e-43 Score=387.00 Aligned_cols=330 Identities=19% Similarity=0.243 Sum_probs=198.8
Q ss_pred CCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC
Q 007106 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
...+|+|+|.++++.++.++++|+++|||+|||++|++|++..+.+. +...+.++|||+||++|+.||++++.+++
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~----~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 79 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNM----PAGRKAKVVFLATKVPVYEQQKNVFKHHF 79 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTC----CSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhC----cccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 34579999999999999999999999999999999999999887542 11226789999999999999999999987
Q ss_pred C--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCC-CCCCccEEEEchhhhhccCCcHHHHH-HHHHh-
Q 007106 198 P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQMLSVGFAEDVE-VILER- 272 (618)
Q Consensus 198 ~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~-~l~~~~~vViDEaH~~~~~~~~~~~~-~il~~- 272 (618)
+ ++.+..++++.....+...+...++|+|+||++|.+.+....+ .+.++++|||||||++.++.....+. ..+..
T Consensus 80 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~ 159 (556)
T 4a2p_A 80 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 159 (556)
T ss_dssp GGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHH
T ss_pred cccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhh
Confidence 6 6788888888876666666666789999999999999988776 78899999999999998776433321 22221
Q ss_pred C---CCCCcEEEEEecCCh-----------HHHHHHHHh------------------ccCCceEeeccCC-cccc-----
Q 007106 273 L---PQNRQSMMFSATMPP-----------WIRSLTNKY------------------LKNPLTVDLVGDS-DQKL----- 314 (618)
Q Consensus 273 l---~~~~~~l~lSAT~~~-----------~~~~~~~~~------------------l~~~~~i~~~~~~-~~~~----- 314 (618)
+ .+..++|+|||||+. .+..+...+ ...+......... ....
T Consensus 160 ~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (556)
T 4a2p_A 160 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 239 (556)
T ss_dssp HCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHH
T ss_pred hcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHH
Confidence 1 356899999999953 111111111 1111111100000 0000
Q ss_pred -----------cC--CeEEE-E----------------------------------------------------------
Q 007106 315 -----------AD--GISLY-S---------------------------------------------------------- 322 (618)
Q Consensus 315 -----------~~--~~~~~-~---------------------------------------------------------- 322 (618)
.. ..... .
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (556)
T 4a2p_A 240 SNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 319 (556)
T ss_dssp HHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 00 00000 0
Q ss_pred ----------------------------------------------EeccCcchhHHHHHHHHHh---ccCCeEEEEecc
Q 007106 323 ----------------------------------------------IATSMYEKPSIIGQLITEH---AKGGKCIVFTQT 353 (618)
Q Consensus 323 ----------------------------------------------~~~~~~~k~~~l~~ll~~~---~~~~~~lVf~~~ 353 (618)
.......|...+..++.+. .++.++||||++
T Consensus 320 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~ 399 (556)
T 4a2p_A 320 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 399 (556)
T ss_dssp HSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESS
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEcc
Confidence 0000123444455555443 457899999999
Q ss_pred hhHHHHHHHHHHcc-------------CCccccccCCCHHHHHHHHHHHhc-CCccEEEEccccccCCCCCCccEEEEcC
Q 007106 354 KRDADRLAHAMAKS-------------YNCEPLHGDISQSQRERTLSAFRD-GRFNILIATDVAARGLDVPNVDLIIHYE 419 (618)
Q Consensus 354 ~~~~~~l~~~L~~~-------------~~~~~lhg~~~~~~r~~i~~~f~~-g~~~vLVaT~~~~~Gidi~~~~~VI~~~ 419 (618)
+..++.+++.|.+. .....+|++|++++|.++++.|++ |+++|||||+++++|||+|++++||+||
T Consensus 400 ~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d 479 (556)
T 4a2p_A 400 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 479 (556)
T ss_dssp HHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEET
T ss_pred HHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeC
Confidence 99999999999652 233456788999999999999999 9999999999999999999999999999
Q ss_pred CCCChhHHHHhhhccCCCCCcceEEEEecchhHH
Q 007106 420 LPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453 (618)
Q Consensus 420 ~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 453 (618)
+|+++..|+||+|| ||. +++.|++++++.+..
T Consensus 480 ~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 480 YSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp CCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred CCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 99999999999999 999 889999999887653
No 24
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=3.7e-44 Score=404.44 Aligned_cols=342 Identities=20% Similarity=0.229 Sum_probs=219.8
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHH
Q 007106 111 VAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (618)
Q Consensus 111 ~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 190 (618)
.+.|...++..|+++|.++++.+++++++|+++|||+|||++|+++++..+.... .....++|||+||++|+.||.
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~----~~~~~~~lvl~Pt~~L~~Q~~ 78 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP----QGQKGKVVFFANQIPVYEQNK 78 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC----TTCCCCEEEECSSHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc----cCCCCeEEEEECCHHHHHHHH
Confidence 3456678899999999999999999999999999999999999999998875521 122368999999999999999
Q ss_pred HHHHHhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCC-CCCCccEEEEchhhhhccCCcHH-HH
Q 007106 191 KEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQMLSVGFAE-DV 266 (618)
Q Consensus 191 ~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~-~l~~~~~vViDEaH~~~~~~~~~-~~ 266 (618)
++++++++ ++++..++++.....+...+...++|+|+||++|.+.+....+ .+.++++|||||||++.+..... .+
T Consensus 79 ~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~ 158 (696)
T 2ykg_A 79 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIM 158 (696)
T ss_dssp HHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHH
T ss_pred HHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHH
Confidence 99999986 5778888888776666666666799999999999999988766 68899999999999987654222 22
Q ss_pred HHHHHh-----CCCCCcEEEEEecCC-------hHHHHHHHHh----------------------ccCCceEeec-cCCc
Q 007106 267 EVILER-----LPQNRQSMMFSATMP-------PWIRSLTNKY----------------------LKNPLTVDLV-GDSD 311 (618)
Q Consensus 267 ~~il~~-----l~~~~~~l~lSAT~~-------~~~~~~~~~~----------------------l~~~~~i~~~-~~~~ 311 (618)
...+.. .++..++|+|||||. ......+... ...|...... ....
T Consensus 159 ~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~ 238 (696)
T 2ykg_A 159 FNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRI 238 (696)
T ss_dssp HHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCS
T ss_pred HHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCccc
Confidence 222222 246789999999997 1111111111 1111110000 0000
Q ss_pred cc-------------------ccC--------------------------------------------------------
Q 007106 312 QK-------------------LAD-------------------------------------------------------- 316 (618)
Q Consensus 312 ~~-------------------~~~-------------------------------------------------------- 316 (618)
.. ...
T Consensus 239 ~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 318 (696)
T 2ykg_A 239 SDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRK 318 (696)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHH
Confidence 00 000
Q ss_pred ---------------------------------CeEEEEE----------------eccCcchhHHHHHHHHHh---ccC
Q 007106 317 ---------------------------------GISLYSI----------------ATSMYEKPSIIGQLITEH---AKG 344 (618)
Q Consensus 317 ---------------------------------~~~~~~~----------------~~~~~~k~~~l~~ll~~~---~~~ 344 (618)
.+..... ......|...+..++.+. .++
T Consensus 319 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~ 398 (696)
T 2ykg_A 319 YNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPE 398 (696)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTT
T ss_pred HhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCC
Confidence 0000000 001334566666777665 256
Q ss_pred CeEEEEecchhHHHHHHHHHHcc-----CCcccc--------ccCCCHHHHHHHHHHHhc-CCccEEEEccccccCCCCC
Q 007106 345 GKCIVFTQTKRDADRLAHAMAKS-----YNCEPL--------HGDISQSQRERTLSAFRD-GRFNILIATDVAARGLDVP 410 (618)
Q Consensus 345 ~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~l--------hg~~~~~~r~~i~~~f~~-g~~~vLVaT~~~~~Gidi~ 410 (618)
.++||||++++.++.+++.|.+. +.+..+ |++|++++|+++++.|++ |+++|||||+++++|||+|
T Consensus 399 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip 478 (696)
T 2ykg_A 399 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIA 478 (696)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---C
T ss_pred CcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCc
Confidence 79999999999999999999764 677777 569999999999999998 9999999999999999999
Q ss_pred CccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHH
Q 007106 411 NVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458 (618)
Q Consensus 411 ~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 458 (618)
++++||+||+|+++++|+||+|| ||. +.+.|+++++..+....+.+
T Consensus 479 ~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 479 QCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp CCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred cCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 99999999999999999999999 998 78999999998776444433
No 25
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-43 Score=406.47 Aligned_cols=329 Identities=21% Similarity=0.265 Sum_probs=256.9
Q ss_pred CccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEE
Q 007106 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (618)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil 179 (618)
.|..+++++.+...+....++.|+|+|+++|+.+..++++|+++|||||||++|++|++..+.. +.++||+
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---------g~rvlvl 233 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---------KQRVIYT 233 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT---------TCEEEEE
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc---------CCeEEEE
Confidence 4556666666666666677888999999999999999999999999999999999999988744 6799999
Q ss_pred cCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhcc
Q 007106 180 APTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (618)
Q Consensus 180 ~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~ 259 (618)
+||++|++|+++.+.+.+. .+.+++++... ...++|+|+||++|.+++......+.++++|||||||++.+
T Consensus 234 ~PtraLa~Q~~~~l~~~~~--~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d 304 (1108)
T 3l9o_A 234 SPIKALSNQKYRELLAEFG--DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD 304 (1108)
T ss_dssp ESSHHHHHHHHHHHHHHTS--SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTS
T ss_pred cCcHHHHHHHHHHHHHHhC--CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccc
Confidence 9999999999999999876 56666766652 34589999999999999988777788999999999999999
Q ss_pred CCcHHHHHHHHHhCCCCCcEEEEEecCChH--HHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccC---------c
Q 007106 260 VGFAEDVEVILERLPQNRQSMMFSATMPPW--IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM---------Y 328 (618)
Q Consensus 260 ~~~~~~~~~il~~l~~~~~~l~lSAT~~~~--~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------~ 328 (618)
+++...+..++..+++.+|+|+||||+++. +...+..+...+..+......... +..+...... .
T Consensus 305 ~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~p----l~~~~~~~~~~~~~~~vd~~ 380 (1108)
T 3l9o_A 305 KERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTP----LQHYLFPAHGDGIYLVVDEK 380 (1108)
T ss_dssp HHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSC----EEEEEEETTSSCCEEEEETT
T ss_pred cchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCccc----ceEEEeecCCcceeeeeccc
Confidence 889999999999999999999999999874 334444444444443222111111 1111110000 0
Q ss_pred ----------------------------------------c---hhHHHHHHHHHh--ccCCeEEEEecchhHHHHHHHH
Q 007106 329 ----------------------------------------E---KPSIIGQLITEH--AKGGKCIVFTQTKRDADRLAHA 363 (618)
Q Consensus 329 ----------------------------------------~---k~~~l~~ll~~~--~~~~~~lVf~~~~~~~~~l~~~ 363 (618)
. ....+..++..+ ....++||||++++.|+.++..
T Consensus 381 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~ 460 (1108)
T 3l9o_A 381 STFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALK 460 (1108)
T ss_dssp TEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHH
Confidence 0 022233333332 2346999999999999999988
Q ss_pred HHcc-C---------------------------------------CccccccCCCHHHHHHHHHHHhcCCccEEEEcccc
Q 007106 364 MAKS-Y---------------------------------------NCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403 (618)
Q Consensus 364 L~~~-~---------------------------------------~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~ 403 (618)
|... + .+..+|++|++.+|+.+++.|++|.++|||||+++
T Consensus 461 L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vl 540 (1108)
T 3l9o_A 461 MSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETF 540 (1108)
T ss_dssp TCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCC
T ss_pred HHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHH
Confidence 7431 1 16779999999999999999999999999999999
Q ss_pred ccCCCCCCccEEEEcCCCC--------ChhHHHHhhhccCCCC--CcceEEEEecch
Q 007106 404 ARGLDVPNVDLIIHYELPN--------TSETFVHRTGRTGRAG--KKGSAILIYTDQ 450 (618)
Q Consensus 404 ~~Gidi~~~~~VI~~~~p~--------~~~~~~Qr~GR~gR~g--~~g~~~~~~~~~ 450 (618)
++|||+|++++||+++.|+ ++.+|+||+||+||.| ..|.|++++.+.
T Consensus 541 a~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 541 SIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp CSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred hcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 9999999999999877643 6677999999999998 688999988765
No 26
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=4.5e-43 Score=385.42 Aligned_cols=331 Identities=21% Similarity=0.246 Sum_probs=226.9
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC-
Q 007106 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP- 198 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~- 198 (618)
.+|+|+|.++++.++.++++|+++|||+|||++|++|++..+.+.. ...+.++|||+||++|+.||++++.++++
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP----CGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC----SSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc----cCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 5699999999999999999999999999999999999998876521 12267899999999999999999999875
Q ss_pred -CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCC-CCCCccEEEEchhhhhccCCc-HHHHHHHHHhC--
Q 007106 199 -SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQMLSVGF-AEDVEVILERL-- 273 (618)
Q Consensus 199 -~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~-~l~~~~~vViDEaH~~~~~~~-~~~~~~il~~l-- 273 (618)
++.+..++++.....+...+...++|+|+||++|.+.+....+ .+.++++|||||||++.+... ...+...+...
T Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 158 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLG 158 (555)
T ss_dssp TTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhc
Confidence 6778888888877666666666799999999999999988776 688899999999999987642 22222333221
Q ss_pred ---CCCCcEEEEEecCChH-----------HHHHHHHhccCCceEeeccCCccc----cc-CCeEEEEEe----------
Q 007106 274 ---PQNRQSMMFSATMPPW-----------IRSLTNKYLKNPLTVDLVGDSDQK----LA-DGISLYSIA---------- 324 (618)
Q Consensus 274 ---~~~~~~l~lSAT~~~~-----------~~~~~~~~l~~~~~i~~~~~~~~~----~~-~~~~~~~~~---------- 324 (618)
.+.+++|+|||||+.. +..+.. .+ +...+......... .. .........
T Consensus 159 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~-~l-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
T 3tbk_A 159 ESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCA-AL-DASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCI 236 (555)
T ss_dssp SCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHH-HT-TCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHH
T ss_pred cccCCCCeEEEEecCcccCccccHHHHHHHHHHHHH-hc-CCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHH
Confidence 2567999999999542 111111 11 11111110000000 00 000000000
Q ss_pred --------------------------------------------------------------------------------
Q 007106 325 -------------------------------------------------------------------------------- 324 (618)
Q Consensus 325 -------------------------------------------------------------------------------- 324 (618)
T Consensus 237 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 316 (555)
T 3tbk_A 237 ISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALII 316 (555)
T ss_dssp HHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence
Q ss_pred --------------------------------------------------ccCcchhHHHHHHHHHh---ccCCeEEEEe
Q 007106 325 --------------------------------------------------TSMYEKPSIIGQLITEH---AKGGKCIVFT 351 (618)
Q Consensus 325 --------------------------------------------------~~~~~k~~~l~~ll~~~---~~~~~~lVf~ 351 (618)
.....|...+.+++.+. .+..++||||
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~ 396 (555)
T 3tbk_A 317 SEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFV 396 (555)
T ss_dssp HHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred hhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEe
Confidence 00123444555555443 2458999999
Q ss_pred cchhHHHHHHHHHHcc-----CC--------ccccccCCCHHHHHHHHHHHhc-CCccEEEEccccccCCCCCCccEEEE
Q 007106 352 QTKRDADRLAHAMAKS-----YN--------CEPLHGDISQSQRERTLSAFRD-GRFNILIATDVAARGLDVPNVDLIIH 417 (618)
Q Consensus 352 ~~~~~~~~l~~~L~~~-----~~--------~~~lhg~~~~~~r~~i~~~f~~-g~~~vLVaT~~~~~Gidi~~~~~VI~ 417 (618)
++++.++.+++.|.+. +. ...+|++|++++|.++++.|++ |+++|||||+++++|||+|++++||+
T Consensus 397 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 397 KTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVIL 476 (555)
T ss_dssp SSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEE
T ss_pred CcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEE
Confidence 9999999999999753 22 3445679999999999999999 99999999999999999999999999
Q ss_pred cCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHH
Q 007106 418 YELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458 (618)
Q Consensus 418 ~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 458 (618)
||+|+++..|+||+|| ||. +.+.|++++++.+......+
T Consensus 477 ~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 477 YEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp ESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred eCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 9999999999999999 999 89999999998876554444
No 27
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.1e-41 Score=387.75 Aligned_cols=331 Identities=20% Similarity=0.237 Sum_probs=206.5
Q ss_pred cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007106 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
.++..|+|+|.++++.++.++++|+++|||+|||++|++|++..+.+. +...+.++||||||++|+.||+++++++
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~----~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~ 319 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNM----PAGRKAKVVFLATKVPVYEQQKNVFKHH 319 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTC----CSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhc----cccCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 467889999999999999999999999999999999999999887652 1123678999999999999999999998
Q ss_pred CC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCC-CCCCccEEEEchhhhhccCCcHHHH-HHHHHh
Q 007106 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQMLSVGFAEDV-EVILER 272 (618)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~-~l~~~~~vViDEaH~~~~~~~~~~~-~~il~~ 272 (618)
++ .+++..++++.....+...+...++|+|+||++|.+.+....+ .+.++++|||||||++.+......+ ..++..
T Consensus 320 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~ 399 (797)
T 4a2q_A 320 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (797)
T ss_dssp HGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHH
T ss_pred cccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 76 6888888988877766667777899999999999999988766 6888999999999998876432222 222222
Q ss_pred ----CCCCCcEEEEEecCCh-----------HHHHHHHH------------------hccCCceEeeccCC-c-cc----
Q 007106 273 ----LPQNRQSMMFSATMPP-----------WIRSLTNK------------------YLKNPLTVDLVGDS-D-QK---- 313 (618)
Q Consensus 273 ----l~~~~~~l~lSAT~~~-----------~~~~~~~~------------------~l~~~~~i~~~~~~-~-~~---- 313 (618)
..+.+++|+|||||+. .+..+... ++..+......... . ..
T Consensus 400 ~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (797)
T 4a2q_A 400 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 479 (797)
T ss_dssp HHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHH
T ss_pred hhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHH
Confidence 1456899999999952 22221111 11111111100000 0 00
Q ss_pred ----------c-cCC--------eEEEE----------------------------------------------------
Q 007106 314 ----------L-ADG--------ISLYS---------------------------------------------------- 322 (618)
Q Consensus 314 ----------~-~~~--------~~~~~---------------------------------------------------- 322 (618)
. ... +....
T Consensus 480 ~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 559 (797)
T 4a2q_A 480 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (797)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0 000 00000
Q ss_pred -----------------------------------------------EeccCcchhHHHHHHHHHh---ccCCeEEEEec
Q 007106 323 -----------------------------------------------IATSMYEKPSIIGQLITEH---AKGGKCIVFTQ 352 (618)
Q Consensus 323 -----------------------------------------------~~~~~~~k~~~l~~ll~~~---~~~~~~lVf~~ 352 (618)
.......|...+..++.+. .++.++||||+
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~ 639 (797)
T 4a2q_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (797)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEES
T ss_pred ccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEEC
Confidence 0000122344444555432 34689999999
Q ss_pred chhHHHHHHHHHHcc-------------CCccccccCCCHHHHHHHHHHHhc-CCccEEEEccccccCCCCCCccEEEEc
Q 007106 353 TKRDADRLAHAMAKS-------------YNCEPLHGDISQSQRERTLSAFRD-GRFNILIATDVAARGLDVPNVDLIIHY 418 (618)
Q Consensus 353 ~~~~~~~l~~~L~~~-------------~~~~~lhg~~~~~~r~~i~~~f~~-g~~~vLVaT~~~~~Gidi~~~~~VI~~ 418 (618)
+++.++.+++.|.+. ..+..+|++|++.+|.++++.|++ |+++|||||+++++|||+|++++||+|
T Consensus 640 ~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~y 719 (797)
T 4a2q_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 719 (797)
T ss_dssp SHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEE
T ss_pred cHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEe
Confidence 999999999999752 234566889999999999999999 999999999999999999999999999
Q ss_pred CCCCChhHHHHhhhccCCCCCcceEEEEecchhHH
Q 007106 419 ELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453 (618)
Q Consensus 419 ~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 453 (618)
|+|+++..|+||+|| ||. +++.|++++++.+..
T Consensus 720 d~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 720 EYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp SCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred CCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 999999999999999 999 899999999886553
No 28
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.8e-41 Score=361.27 Aligned_cols=322 Identities=23% Similarity=0.301 Sum_probs=246.0
Q ss_pred CChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC--C
Q 007106 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--P 198 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~--~ 198 (618)
.|+|+|.++++.++.+ ++|+.+|||+|||++++++++..+.. ...++|||||+++|+.||++++.+++ +
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~--------~~~~~liv~P~~~L~~q~~~~~~~~~~~~ 79 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK--------YGGKVLMLAPTKPLVLQHAESFRRLFNLP 79 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH--------SCSCEEEECSSHHHHHHHHHHHHHHBCSC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc--------CCCeEEEEECCHHHHHHHHHHHHHHhCcc
Confidence 5999999999999998 99999999999999999998877641 25689999999999999999999987 4
Q ss_pred CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCc
Q 007106 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278 (618)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~ 278 (618)
...+..+++......... ....++|+|+||+.|...+....+.+.++++||+||||++.+......+...+....+..+
T Consensus 80 ~~~v~~~~g~~~~~~~~~-~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~ 158 (494)
T 1wp9_A 80 PEKIVALTGEKSPEERSK-AWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPL 158 (494)
T ss_dssp GGGEEEECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCC
T ss_pred hhheEEeeCCcchhhhhh-hccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCe
Confidence 457788887776554433 3345799999999999998887788899999999999999866555555666666667899
Q ss_pred EEEEEecCChH---HHHHHHHhccCCceEeeccCCcc-cc-c-CCeEEEEEe----------------------------
Q 007106 279 SMMFSATMPPW---IRSLTNKYLKNPLTVDLVGDSDQ-KL-A-DGISLYSIA---------------------------- 324 (618)
Q Consensus 279 ~l~lSAT~~~~---~~~~~~~~l~~~~~i~~~~~~~~-~~-~-~~~~~~~~~---------------------------- 324 (618)
+++|||||... +..+...+............... .. . .........
T Consensus 159 ~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (494)
T 1wp9_A 159 VIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGL 238 (494)
T ss_dssp EEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred EEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999743 23333222111111000000000 00 0 000000000
Q ss_pred --------------------------------------------------------------------------------
Q 007106 325 -------------------------------------------------------------------------------- 324 (618)
Q Consensus 325 -------------------------------------------------------------------------------- 324 (618)
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 318 (494)
T 1wp9_A 239 LESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKE 318 (494)
T ss_dssp SSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred ccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhh
Confidence
Q ss_pred --------------------ccCcchhHHHHHHHHHh---ccCCeEEEEecchhHHHHHHHHHHcc-CCcccccc-----
Q 007106 325 --------------------TSMYEKPSIIGQLITEH---AKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHG----- 375 (618)
Q Consensus 325 --------------------~~~~~k~~~l~~ll~~~---~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg----- 375 (618)
.....|...+.+++.+. ..+.++||||++++.++.+++.|.+. +.+..+||
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~ 398 (494)
T 1wp9_A 319 IFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKE 398 (494)
T ss_dssp HHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecccccc
Confidence 02233455556666654 35789999999999999999999764 88999999
Q ss_pred ---CCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhH
Q 007106 376 ---DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452 (618)
Q Consensus 376 ---~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 452 (618)
+|+..+|+++++.|++++++|||||+++++|||+|++++||++++|+++..|+||+||++|.++ +.+++++++.+.
T Consensus 399 ~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 399 NDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTR 477 (494)
T ss_dssp ------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSH
T ss_pred ccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 999999988754
Q ss_pred H
Q 007106 453 R 453 (618)
Q Consensus 453 ~ 453 (618)
+
T Consensus 478 e 478 (494)
T 1wp9_A 478 D 478 (494)
T ss_dssp H
T ss_pred H
Confidence 4
No 29
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-41 Score=384.47 Aligned_cols=316 Identities=21% Similarity=0.290 Sum_probs=246.2
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC
Q 007106 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~ 199 (618)
++|+++|.++++.+.+++++|+++|||+|||++|+++++..+.. +.++||++||++|++|+++++.+.+.
T Consensus 85 f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~---------g~rvL~l~PtkaLa~Q~~~~l~~~~~- 154 (1010)
T 2xgj_A 85 FTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---------KQRVIYTSPIKALSNQKYRELLAEFG- 154 (1010)
T ss_dssp SCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT---------TCEEEEEESSHHHHHHHHHHHHHHHS-
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc---------CCeEEEECChHHHHHHHHHHHHHHhC-
Confidence 45999999999999999999999999999999999998877643 67999999999999999999999876
Q ss_pred CcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcE
Q 007106 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279 (618)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~ 279 (618)
.+..++|+.... ..++|+|+||++|.+++.+....+.++++|||||||++.++.+...++.++..++.++++
T Consensus 155 -~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~i 226 (1010)
T 2xgj_A 155 -DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRY 226 (1010)
T ss_dssp -CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEE
T ss_pred -CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeE
Confidence 566677766532 347999999999999888877778999999999999999998999999999999999999
Q ss_pred EEEEecCChHHH--HHHHHhccCCceEeeccCCcccccCCeEEEEEec---------cCcc-------------------
Q 007106 280 MMFSATMPPWIR--SLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT---------SMYE------------------- 329 (618)
Q Consensus 280 l~lSAT~~~~~~--~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~---------~~~~------------------- 329 (618)
|+||||+++... ..+......+..+....... ..+..+.... ....
T Consensus 227 l~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp----~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 302 (1010)
T 2xgj_A 227 VFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP----TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIG 302 (1010)
T ss_dssp EEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCS----SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC----
T ss_pred EEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc----ccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhc
Confidence 999999987432 22222233333332211110 0111111110 0000
Q ss_pred ----------------h--------hHHHHHHHHHhc--cCCeEEEEecchhHHHHHHHHHHcc-C--------------
Q 007106 330 ----------------K--------PSIIGQLITEHA--KGGKCIVFTQTKRDADRLAHAMAKS-Y-------------- 368 (618)
Q Consensus 330 ----------------k--------~~~l~~ll~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~-~-------------- 368 (618)
+ ...+..++.... ...++||||++++.|+.+++.|... +
T Consensus 303 ~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~ 382 (1010)
T 2xgj_A 303 DDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFN 382 (1010)
T ss_dssp --------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 0 112233333322 3458999999999999999888541 1
Q ss_pred -------------------------CccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEE----cC
Q 007106 369 -------------------------NCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH----YE 419 (618)
Q Consensus 369 -------------------------~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~----~~ 419 (618)
.+..+|++|++.+|+.+++.|++|.++|||||+++++|||+|++++||+ ||
T Consensus 383 ~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd 462 (1010)
T 2xgj_A 383 NAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWD 462 (1010)
T ss_dssp HHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEEC
T ss_pred HHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccC
Confidence 2567899999999999999999999999999999999999999999999 99
Q ss_pred C----CCChhHHHHhhhccCCCCC--cceEEEEecch-hHHHHHH
Q 007106 420 L----PNTSETFVHRTGRTGRAGK--KGSAILIYTDQ-QARQVKS 457 (618)
Q Consensus 420 ~----p~~~~~~~Qr~GR~gR~g~--~g~~~~~~~~~-~~~~~~~ 457 (618)
. |.++.+|+||+||+||.|. .|.|++++++. +...+..
T Consensus 463 ~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~ 507 (1010)
T 2xgj_A 463 GQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKG 507 (1010)
T ss_dssp SSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHH
T ss_pred CcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHH
Confidence 8 8899999999999999986 59999999865 3333333
No 30
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=6.8e-41 Score=387.41 Aligned_cols=324 Identities=21% Similarity=0.297 Sum_probs=250.6
Q ss_pred HHHHHHHH-cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHH
Q 007106 109 DIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (618)
Q Consensus 109 ~l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (618)
.+.+.+.. .++ +|+|+|+++++.+++++++|+++|||||||++++++++..+. .++++|||+||++|+.
T Consensus 66 ~~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~---------~~~~~Lil~PtreLa~ 135 (1104)
T 4ddu_A 66 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---------KGKKSALVFPTVTLVK 135 (1104)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT---------TTCCEEEEESSHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh---------cCCeEEEEechHHHHH
Confidence 34445544 455 699999999999999999999999999999988888777652 2678999999999999
Q ss_pred HHHHHHHHhC-CCCcEEEEEcCcch---hhhhHHhhcC-CCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhcc---
Q 007106 188 QVEKEFHESA-PSLDTICVYGGTPI---SHQMRALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS--- 259 (618)
Q Consensus 188 q~~~~l~~~~-~~~~~~~~~g~~~~---~~~~~~l~~~-~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~--- 259 (618)
|+++.++++. .++++..++++.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||++..
T Consensus 136 Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r 213 (1104)
T 4ddu_A 136 QTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASR 213 (1104)
T ss_dssp HHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSH
T ss_pred HHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccc
Confidence 9999999965 35688889998876 4455556655 99999999999887764 5577999999999986554
Q ss_pred --------CCcHHH-HHHHHHhCC-----------CCCcEEEEEec-CChHHHH-HHHHhccCCceEeeccCCcccccCC
Q 007106 260 --------VGFAED-VEVILERLP-----------QNRQSMMFSAT-MPPWIRS-LTNKYLKNPLTVDLVGDSDQKLADG 317 (618)
Q Consensus 260 --------~~~~~~-~~~il~~l~-----------~~~~~l~lSAT-~~~~~~~-~~~~~l~~~~~i~~~~~~~~~~~~~ 317 (618)
++|... +..++..++ .+.|+++|||| .|..+.. +...++. +.+.. .......
T Consensus 214 ~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~--~~~~~~~ 287 (1104)
T 4ddu_A 214 NIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGR--LVSVARN 287 (1104)
T ss_dssp HHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCB--CCCCCCC
T ss_pred cchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEecc--CCCCcCC
Confidence 677777 888888777 78999999999 4544332 2222222 21111 1122233
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCcc-ccccCCCHHHHHHHHHHHhcCCcc
Q 007106 318 ISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCE-PLHGDISQSQRERTLSAFRDGRFN 395 (618)
Q Consensus 318 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~-~lhg~~~~~~r~~i~~~f~~g~~~ 395 (618)
+....... .+...+..++... +.++||||++++.++.+++.|.+. +.+. .+|+. |++ ++.|++|+.+
T Consensus 288 i~~~~~~~---~k~~~L~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~ 356 (1104)
T 4ddu_A 288 ITHVRISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKIN 356 (1104)
T ss_dssp EEEEEESC---CCHHHHHHHHHHH--CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCS
T ss_pred ceeEEEec---CHHHHHHHHHHhc--CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCC
Confidence 44443333 4566677777763 479999999999999999999764 8888 99983 555 9999999999
Q ss_pred EEEE----ccccccCCCCCC-ccEEEEcCCCC------------------------------------------------
Q 007106 396 ILIA----TDVAARGLDVPN-VDLIIHYELPN------------------------------------------------ 422 (618)
Q Consensus 396 vLVa----T~~~~~Gidi~~-~~~VI~~~~p~------------------------------------------------ 422 (618)
|||| |+++++|||+|+ +++||+||+|.
T Consensus 357 VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~ 436 (1104)
T 4ddu_A 357 ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKE 436 (1104)
T ss_dssp EEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHH
T ss_pred EEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 9999 999999999999 99999999998
Q ss_pred ------------------------ChhHHHHhhhccCCCCC----cceEEEEecchhHHHHHHHHHHhC
Q 007106 423 ------------------------TSETFVHRTGRTGRAGK----KGSAILIYTDQQARQVKSIERDVG 463 (618)
Q Consensus 423 ------------------------~~~~~~Qr~GR~gR~g~----~g~~~~~~~~~~~~~~~~l~~~l~ 463 (618)
++.+|+||+||++|.+. +|.+++++ +|...++.|.+.+.
T Consensus 437 ~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 437 FVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 503 (1104)
T ss_dssp HHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred HHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHh
Confidence 77899999999999653 44555555 66667777766663
No 31
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=2.8e-40 Score=384.78 Aligned_cols=322 Identities=16% Similarity=0.233 Sum_probs=254.7
Q ss_pred CCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhC----CC--CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeE
Q 007106 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQ----GR--DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (618)
Q Consensus 103 ~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~----~~--~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~ 176 (618)
.++++....+.+...-.+++||+|.++++.+++ ++ ++|++++||+|||++|+++++..+.. +.++
T Consensus 585 ~~~~~~~~~~~~~~~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---------g~~v 655 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---------HKQV 655 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---------TCEE
T ss_pred CCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---------CCeE
Confidence 355677777778665445689999999999886 44 89999999999999999888876533 6799
Q ss_pred EEEcCcHHHHHHHHHHHHHhCCC--CcEEEEEcCcchhhhh---HHhhc-CCCEEEEChHHHHHHHHhcCCCCCCccEEE
Q 007106 177 LVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQM---RALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 177 lil~Pt~~La~q~~~~l~~~~~~--~~~~~~~g~~~~~~~~---~~l~~-~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vV 250 (618)
+|+|||++|++||++++.+.+.. +++..+++........ ..+.. .++|+|+||+.|. ..+.+.++++||
T Consensus 656 lvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvI 730 (1151)
T 2eyq_A 656 AVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLI 730 (1151)
T ss_dssp EEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEE
T ss_pred EEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEE
Confidence 99999999999999999988764 4566666655443332 23334 4899999997663 346688999999
Q ss_pred EchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcch
Q 007106 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330 (618)
Q Consensus 251 iDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k 330 (618)
|||+|+ |......++..++.++++|+|||||++....+....+.++..+.. ... ....+..+... ..+
T Consensus 731 iDEaH~-----~g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~---~~~-~r~~i~~~~~~---~~~ 798 (1151)
T 2eyq_A 731 VDEEHR-----FGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT---PPA-RRLAVKTFVRE---YDS 798 (1151)
T ss_dssp EESGGG-----SCHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCC---CCC-BCBCEEEEEEE---CCH
T ss_pred EechHh-----cChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEec---CCC-CccccEEEEec---CCH
Confidence 999999 455667777778888999999999988776665555444332221 111 11122222222 233
Q ss_pred hHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc---CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCC
Q 007106 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS---YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGL 407 (618)
Q Consensus 331 ~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gi 407 (618)
......++.+...+++++|||++++.++.+++.|.+. +.+..+||+|++.+|+++++.|++++++|||||+++++||
T Consensus 799 ~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~Gi 878 (1151)
T 2eyq_A 799 MVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 878 (1151)
T ss_dssp HHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGS
T ss_pred HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeee
Confidence 4556666777777899999999999999999999764 5788999999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCC-CCChhHHHHhhhccCCCCCcceEEEEecch
Q 007106 408 DVPNVDLIIHYEL-PNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 408 di~~~~~VI~~~~-p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
|+|++++||++++ ++++.+|+||+||+||.++++.|++++.+.
T Consensus 879 Dip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 879 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp CCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred cccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 9999999999998 469999999999999999999999998765
No 32
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.6e-41 Score=381.32 Aligned_cols=314 Identities=23% Similarity=0.322 Sum_probs=221.3
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHH-HHHHHHhCC
Q 007106 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV-EKEFHESAP 198 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~-~~~l~~~~~ 198 (618)
..|+|+|.++++.+++++++|+.+|||+|||++|++|++..+...... ....++|||+|+++|+.|| +++++++++
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~---~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKA---SEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHH---TCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc---CCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 469999999999999999999999999999999999999887764321 1236799999999999999 999999887
Q ss_pred C-CcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHH------HhcCCCCCCccEEEEchhhhhccCCc-HHHHHHHH
Q 007106 199 S-LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLI------KRNALNLSEVQFVVLDEADQMLSVGF-AEDVEVIL 270 (618)
Q Consensus 199 ~-~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l------~~~~~~l~~~~~vViDEaH~~~~~~~-~~~~~~il 270 (618)
. +.+..++++.........+...++|+|+||++|.+.+ ....+.+.++++|||||||++..... ...+...+
T Consensus 83 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 83 KWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp TTSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred cCceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 6 8888888888776666666678999999999999887 44456788899999999998865432 22222222
Q ss_pred Hh----C---------CCCCcEEEEEecCChH-----------HHHHHHHhccCCceEeeccCCcc----cccCCeEEEE
Q 007106 271 ER----L---------PQNRQSMMFSATMPPW-----------IRSLTNKYLKNPLTVDLVGDSDQ----KLADGISLYS 322 (618)
Q Consensus 271 ~~----l---------~~~~~~l~lSAT~~~~-----------~~~~~~~~l~~~~~i~~~~~~~~----~~~~~~~~~~ 322 (618)
.. . .+.+++|+|||||+.. +..+...+. ...+........ ........+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~--~~~i~~~~~~~~~l~~~~~~p~~~~~ 240 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLD--AFTIKTVKENLDQLKNQIQEPCKKFA 240 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHT--CSCCCCCCTTHHHHHHHSCCCEEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcC--CCEEEeecCchHHHhhhcCCCceEEE
Confidence 11 1 1567999999999862 122211111 100000000000 0000000000
Q ss_pred Eec-----------------------------------------------------------------------------
Q 007106 323 IAT----------------------------------------------------------------------------- 325 (618)
Q Consensus 323 ~~~----------------------------------------------------------------------------- 325 (618)
...
T Consensus 241 ~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (699)
T 4gl2_A 241 IADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMI 320 (699)
T ss_dssp EEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred EcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000
Q ss_pred ---------------------------------------------------------cCcchhHHHHHHHHHhc---c-C
Q 007106 326 ---------------------------------------------------------SMYEKPSIIGQLITEHA---K-G 344 (618)
Q Consensus 326 ---------------------------------------------------------~~~~k~~~l~~ll~~~~---~-~ 344 (618)
....|...+..++.... + +
T Consensus 321 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~ 400 (699)
T 4gl2_A 321 DAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEES 400 (699)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCC
Confidence 01112222223333221 2 6
Q ss_pred CeEEEEecchhHHHHHHHHHHcc-------CCccccccC--------CCHHHHHHHHHHHhcCCccEEEEccccccCCCC
Q 007106 345 GKCIVFTQTKRDADRLAHAMAKS-------YNCEPLHGD--------ISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409 (618)
Q Consensus 345 ~~~lVf~~~~~~~~~l~~~L~~~-------~~~~~lhg~--------~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi 409 (618)
.++||||++++.++.+++.|.+. +.+..+||+ |++.+|.++++.|++|+++|||||+++++|||+
T Consensus 401 ~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDi 480 (699)
T 4gl2_A 401 ARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDI 480 (699)
T ss_dssp CCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCC
T ss_pred CcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCcc
Confidence 89999999999999999999863 888999999 999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCChhHHHHhhhccCCCC
Q 007106 410 PNVDLIIHYELPNTSETFVHRTGRTGRAG 438 (618)
Q Consensus 410 ~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g 438 (618)
|++++||+||+|+++..|+||+||++|.|
T Consensus 481 p~v~~VI~~d~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 481 KECNIVIRYGLVTNEIAMVQARGRARADE 509 (699)
T ss_dssp CSCCCCEEESCCCCHHHHHHHHTTSCSSS
T ss_pred ccCCEEEEeCCCCCHHHHHHHcCCCCCCC
Confidence 99999999999999999999999987655
No 33
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=8.1e-41 Score=384.32 Aligned_cols=331 Identities=20% Similarity=0.242 Sum_probs=204.6
Q ss_pred HcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007106 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 116 ~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
-.++..|+++|.++++.++.++++|+++|||+|||++|++|++..+.+. +...+.++|||+||++|+.||++++++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~----~~~~~~~vLvl~Pt~~L~~Q~~~~~~~ 318 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNM----PAGRKAKVVFLATKVPVYEQQKNVFKH 318 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTC----CSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhc----cccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 3467889999999999999999999999999999999999998776431 112267899999999999999999999
Q ss_pred hCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCC-CCCCccEEEEchhhhhccCCcHHH-HHHHHH
Q 007106 196 SAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQMLSVGFAED-VEVILE 271 (618)
Q Consensus 196 ~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~-~l~~~~~vViDEaH~~~~~~~~~~-~~~il~ 271 (618)
+++ .+++..++++.....+...+...++|+|+||++|.+.+....+ .+.++++|||||||++.+...... +..++.
T Consensus 319 ~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~ 398 (936)
T 4a2w_A 319 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (936)
T ss_dssp HHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred HhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHH
Confidence 875 6788888888876666666666789999999999999987766 678899999999999887643222 222222
Q ss_pred h----CCCCCcEEEEEecCCh-----------HHHHHHHH------------------hccCCceEeeccCC-cc-c---
Q 007106 272 R----LPQNRQSMMFSATMPP-----------WIRSLTNK------------------YLKNPLTVDLVGDS-DQ-K--- 313 (618)
Q Consensus 272 ~----l~~~~~~l~lSAT~~~-----------~~~~~~~~------------------~l~~~~~i~~~~~~-~~-~--- 313 (618)
. ..+..++|+|||||.. .+..+... ++..+......... .. .
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~ 478 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHH
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHH
Confidence 2 1456899999999952 11111111 11112111110000 00 0
Q ss_pred -----------c-cCC--------eEEEEE--------------------------------------------------
Q 007106 314 -----------L-ADG--------ISLYSI-------------------------------------------------- 323 (618)
Q Consensus 314 -----------~-~~~--------~~~~~~-------------------------------------------------- 323 (618)
. ... +.....
T Consensus 479 ~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i 558 (936)
T 4a2w_A 479 IISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (936)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 000 000000
Q ss_pred -------------------------------------------------eccCcchhHHHHHHHHHh---ccCCeEEEEe
Q 007106 324 -------------------------------------------------ATSMYEKPSIIGQLITEH---AKGGKCIVFT 351 (618)
Q Consensus 324 -------------------------------------------------~~~~~~k~~~l~~ll~~~---~~~~~~lVf~ 351 (618)
......|...+.+++.+. ..+.++||||
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~ 638 (936)
T 4a2w_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 638 (936)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEE
T ss_pred hcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEe
Confidence 000122344444555543 3468999999
Q ss_pred cchhHHHHHHHHHHcc-------------CCccccccCCCHHHHHHHHHHHhc-CCccEEEEccccccCCCCCCccEEEE
Q 007106 352 QTKRDADRLAHAMAKS-------------YNCEPLHGDISQSQRERTLSAFRD-GRFNILIATDVAARGLDVPNVDLIIH 417 (618)
Q Consensus 352 ~~~~~~~~l~~~L~~~-------------~~~~~lhg~~~~~~r~~i~~~f~~-g~~~vLVaT~~~~~Gidi~~~~~VI~ 417 (618)
++++.++.+++.|.+. ..+..+|++|++.+|.++++.|++ |+++|||||+++++|||+|++++||+
T Consensus 639 ~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~ 718 (936)
T 4a2w_A 639 KTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL 718 (936)
T ss_dssp SSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEE
T ss_pred CCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEE
Confidence 9999999999999753 234456889999999999999999 99999999999999999999999999
Q ss_pred cCCCCChhHHHHhhhccCCCCCcceEEEEecchhH
Q 007106 418 YELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452 (618)
Q Consensus 418 ~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 452 (618)
||+|+++..|+||+|| ||. +++.|+++++..+.
T Consensus 719 yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 719 YEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp ESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred eCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 9999999999999999 999 78999999887544
No 34
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=9.9e-41 Score=386.57 Aligned_cols=324 Identities=19% Similarity=0.298 Sum_probs=250.4
Q ss_pred HHHHHHH-cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHH
Q 007106 110 IVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (618)
Q Consensus 110 l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q 188 (618)
+.+.+.+ .++. | ++|.++|+.+++++|+|+++|||||||+ |++|++..+.. .++++|||+||++|+.|
T Consensus 46 ~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--------~~~~~lil~PtreLa~Q 114 (1054)
T 1gku_B 46 FVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--------KGKRCYVIFPTSLLVIQ 114 (1054)
T ss_dssp HHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--------TSCCEEEEESCHHHHHH
T ss_pred HHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--------cCCeEEEEeccHHHHHH
Confidence 3344443 6888 9 9999999999999999999999999998 88888777643 26789999999999999
Q ss_pred HHHHHHHhCCC--C----cEEEEEcCcchhhh---hHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhcc
Q 007106 189 VEKEFHESAPS--L----DTICVYGGTPISHQ---MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (618)
Q Consensus 189 ~~~~l~~~~~~--~----~~~~~~g~~~~~~~---~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~ 259 (618)
+++.+++++.. + .+.+++|+.....+ ...+.. ++|+|+||++|++++.. +.++++|||||||++++
T Consensus 115 ~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~ 189 (1054)
T 1gku_B 115 AAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK 189 (1054)
T ss_dssp HHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT
T ss_pred HHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh
Confidence 99999987753 4 67778888776553 344455 99999999999987665 66899999999999998
Q ss_pred CCcHHHHHHHHHhCC-----------CCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCc
Q 007106 260 VGFAEDVEVILERLP-----------QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328 (618)
Q Consensus 260 ~~~~~~~~~il~~l~-----------~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 328 (618)
+...++.++..+. ...|++++|||+++. ..+...++.++..+.+. ........+.+... ..
T Consensus 190 --~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~--~~~~~~~~i~~~~~---~~ 261 (1054)
T 1gku_B 190 --ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIG--SSRITVRNVEDVAV---ND 261 (1054)
T ss_dssp --STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCS--CCEECCCCEEEEEE---SC
T ss_pred --ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEcc--CcccCcCCceEEEe---ch
Confidence 5788888888773 567899999999886 43333333333333221 11112223333333 24
Q ss_pred chhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHccCCccccccCCCHHHHHHHHHHHhcCCccEEEE----ccccc
Q 007106 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA----TDVAA 404 (618)
Q Consensus 329 ~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVa----T~~~~ 404 (618)
.+...+..+++.. +.++||||++++.++.+++.|.+.+.+..+|+++ +++++.|++|+++|||| |++++
T Consensus 262 ~k~~~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~ 334 (1054)
T 1gku_B 262 ESISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNKFRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLV 334 (1054)
T ss_dssp CCTTTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------
T ss_pred hHHHHHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeE
Confidence 5556666776654 5689999999999999999997668899999998 37889999999999999 99999
Q ss_pred cCCCCCCc-cEEEEcCCC--------------------------------------------------------------
Q 007106 405 RGLDVPNV-DLIIHYELP-------------------------------------------------------------- 421 (618)
Q Consensus 405 ~Gidi~~~-~~VI~~~~p-------------------------------------------------------------- 421 (618)
+|||+|++ ++||++++|
T Consensus 335 rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 414 (1054)
T 1gku_B 335 RGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDV 414 (1054)
T ss_dssp CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSS
T ss_pred eccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccce
Confidence 99999995 999999999
Q ss_pred ---------CChhHHHHhhhccCCCCCcc--eEEEEecchhHHHHHHHHHHhCC
Q 007106 422 ---------NTSETFVHRTGRTGRAGKKG--SAILIYTDQQARQVKSIERDVGC 464 (618)
Q Consensus 422 ---------~~~~~~~Qr~GR~gR~g~~g--~~~~~~~~~~~~~~~~l~~~l~~ 464 (618)
.+..+|+||+||+||.+..| .+++++...+...+..+++.+..
T Consensus 415 ~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 415 VVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp EEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred eEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 68999999999999987665 47777777777788888777763
No 35
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=5.1e-40 Score=377.13 Aligned_cols=311 Identities=21% Similarity=0.260 Sum_probs=236.8
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC
Q 007106 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (618)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~ 198 (618)
.++|+++|.++|+.+++++++|+++|||+|||++|++++...+.. +.++||++|+++|+.|+++++.+.++
T Consensus 37 ~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~---------g~~vlvl~PtraLa~Q~~~~l~~~~~ 107 (997)
T 4a4z_A 37 PFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN---------MTKTIYTSPIKALSNQKFRDFKETFD 107 (997)
T ss_dssp SSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT---------TCEEEEEESCGGGHHHHHHHHHTTC-
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc---------CCeEEEEeCCHHHHHHHHHHHHHHcC
Confidence 356999999999999999999999999999999999988776532 67899999999999999999999887
Q ss_pred CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCc
Q 007106 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278 (618)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~ 278 (618)
++.+..++++.... ..++|+|+||++|.+.+......+.++++|||||||++.++++...++.++..++++.+
T Consensus 108 ~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~ 180 (997)
T 4a4z_A 108 DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVK 180 (997)
T ss_dssp -CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCE
T ss_pred CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCC
Confidence 78888888876532 34799999999999998887777889999999999999999999999999999999999
Q ss_pred EEEEEecCChHHHHHHHHhc---cCCceEeeccCCcccccCCe----EE-------------------------------
Q 007106 279 SMMFSATMPPWIRSLTNKYL---KNPLTVDLVGDSDQKLADGI----SL------------------------------- 320 (618)
Q Consensus 279 ~l~lSAT~~~~~~~~~~~~l---~~~~~i~~~~~~~~~~~~~~----~~------------------------------- 320 (618)
+|+||||+++.. ++...+. ..+..+.........+...+ ..
T Consensus 181 iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 259 (997)
T 4a4z_A 181 FILLSATVPNTY-EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAP 259 (997)
T ss_dssp EEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC--------
T ss_pred EEEEcCCCCChH-HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccc
Confidence 999999998643 2222211 01111100000000000000 00
Q ss_pred ------------------------------------------------------EEEeccCcchhHHHHHHHHHhccCCe
Q 007106 321 ------------------------------------------------------YSIATSMYEKPSIIGQLITEHAKGGK 346 (618)
Q Consensus 321 ------------------------------------------------------~~~~~~~~~k~~~l~~ll~~~~~~~~ 346 (618)
+........+...+...+... ...+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~-~~~~ 338 (997)
T 4a4z_A 260 SKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR-ELLP 338 (997)
T ss_dssp ---------------------------------------------------------CCCCTTHHHHHHHHHHHT-TCCS
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC-CCCC
Confidence 000001112222333334332 3469
Q ss_pred EEEEecchhHHHHHHHHHHcc-C---------------------------------------CccccccCCCHHHHHHHH
Q 007106 347 CIVFTQTKRDADRLAHAMAKS-Y---------------------------------------NCEPLHGDISQSQRERTL 386 (618)
Q Consensus 347 ~lVf~~~~~~~~~l~~~L~~~-~---------------------------------------~~~~lhg~~~~~~r~~i~ 386 (618)
+||||++++.|+.+++.|.+. + .+..+|++|++.+|+.++
T Consensus 339 ~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~ 418 (997)
T 4a4z_A 339 MVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIE 418 (997)
T ss_dssp EEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHH
Confidence 999999999999999888541 1 467899999999999999
Q ss_pred HHHhcCCccEEEEccccccCCCCCCccEEEEcCCCC---------ChhHHHHhhhccCCCC--CcceEEEEec
Q 007106 387 SAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN---------TSETFVHRTGRTGRAG--KKGSAILIYT 448 (618)
Q Consensus 387 ~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~---------~~~~~~Qr~GR~gR~g--~~g~~~~~~~ 448 (618)
+.|++|.++|||||+++++|||+|+ ..||+++.+. ++.+|+||+|||||.| ..|.|++++.
T Consensus 419 ~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 419 ILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred HHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 9999999999999999999999999 6666655555 9999999999999987 5777888773
No 36
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=4.4e-40 Score=358.23 Aligned_cols=320 Identities=17% Similarity=0.220 Sum_probs=242.6
Q ss_pred HcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007106 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 116 ~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
..++ .|+|+|..+++.+++++ |.+++||+|||++|.+|++...+. +..++||+||++||.|.++++..
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~---------g~~vlVltptreLA~qd~e~~~~ 146 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT---------GKGVHVVTVNEYLASRDAEQMGK 146 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT---------SSCEEEEESSHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHHHHHHHH
Confidence 4688 89999999999999998 999999999999999999854332 56899999999999999999887
Q ss_pred hCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHH-HHHHHhc------CCCCCCccEEEEchhhhhc-cCC----
Q 007106 196 SAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQML-SVG---- 261 (618)
Q Consensus 196 ~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l-~~~l~~~------~~~l~~~~~vViDEaH~~~-~~~---- 261 (618)
++. ++++.+++++.+... +.....++|+|+||++| ++++... .+.++.+.++||||||+|+ ++.
T Consensus 147 l~~~lgl~v~~i~gg~~~~~--r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tpl 224 (844)
T 1tf5_A 147 IFEFLGLTVGLNLNSMSKDE--KREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPL 224 (844)
T ss_dssp HHHHTTCCEEECCTTSCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEE
T ss_pred HHhhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccch
Confidence 643 678888888876543 33345689999999999 6766543 3557889999999999998 653
Q ss_pred -----------cHHHHHHHHHhCC---------CCCcEE-----------------EEEecCChHHHHHH-----HHhcc
Q 007106 262 -----------FAEDVEVILERLP---------QNRQSM-----------------MFSATMPPWIRSLT-----NKYLK 299 (618)
Q Consensus 262 -----------~~~~~~~il~~l~---------~~~~~l-----------------~lSAT~~~~~~~~~-----~~~l~ 299 (618)
|...+..++..++ +.+|++ ++|||.+.....+. ..++.
T Consensus 225 Iisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~ 304 (844)
T 1tf5_A 225 IISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQ 304 (844)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCC
T ss_pred hhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhh
Confidence 6688899999987 367777 88999875333321 12221
Q ss_pred -CCceE------eeccCCccc----------------------------ccCCeE-------------------------
Q 007106 300 -NPLTV------DLVGDSDQK----------------------------LADGIS------------------------- 319 (618)
Q Consensus 300 -~~~~i------~~~~~~~~~----------------------------~~~~~~------------------------- 319 (618)
+...+ .++...... ....+.
T Consensus 305 ~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~ 384 (844)
T 1tf5_A 305 KDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEF 384 (844)
T ss_dssp BTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHH
Confidence 11110 011000000 000000
Q ss_pred -------E---------------EEEeccCcchhHHHHHHHHH-hccCCeEEEEecchhHHHHHHHHHHcc-CCcccccc
Q 007106 320 -------L---------------YSIATSMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHG 375 (618)
Q Consensus 320 -------~---------------~~~~~~~~~k~~~l~~ll~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg 375 (618)
. ..+.....+|...+...+.+ +..+.++||||+|++.++.|++.|.+. +++..+|+
T Consensus 385 ~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg 464 (844)
T 1tf5_A 385 RNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNA 464 (844)
T ss_dssp HHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECS
T ss_pred HHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeC
Confidence 0 01222334566666666654 345779999999999999999999764 99999999
Q ss_pred CCCHHHHHHHHHHHhcCCccEEEEccccccCCCCC--------CccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEe
Q 007106 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVP--------NVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447 (618)
Q Consensus 376 ~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~--------~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~ 447 (618)
++.+.++..+...++.+ .|+|||++++||+||+ ++.+||+++.|.+...|+||+||+||.|.+|.+++|+
T Consensus 465 ~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~v 542 (844)
T 1tf5_A 465 KNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYL 542 (844)
T ss_dssp SCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred CccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEe
Confidence 99888887666656554 6999999999999999 7889999999999999999999999999999999999
Q ss_pred cchh
Q 007106 448 TDQQ 451 (618)
Q Consensus 448 ~~~~ 451 (618)
+..|
T Consensus 543 s~eD 546 (844)
T 1tf5_A 543 SMED 546 (844)
T ss_dssp ETTS
T ss_pred cHHH
Confidence 8765
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=9.5e-38 Score=373.26 Aligned_cols=338 Identities=18% Similarity=0.256 Sum_probs=251.0
Q ss_pred CCHHHHHHHHHcCCCCChHHHHHHHHHHhC-CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHH
Q 007106 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (618)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~-~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~ 184 (618)
+.+...+.|...+|..++|+|.++++.++. ++|+++++|||||||++|.+|++..+.+ ..+.++||++|+++
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~-------~~~~kavyi~P~ra 983 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ-------SSEGRCVYITPMEA 983 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHH-------CTTCCEEEECSCHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHh-------CCCCEEEEEcChHH
Confidence 445666777777899999999999999975 5789999999999999999999998875 23568999999999
Q ss_pred HHHHHHHHHHHhCC---CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCC--CCCCccEEEEchhhhhcc
Q 007106 185 LAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL--NLSEVQFVVLDEADQMLS 259 (618)
Q Consensus 185 La~q~~~~l~~~~~---~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~--~l~~~~~vViDEaH~~~~ 259 (618)
|++|.++++.+.+. ++++..++|+.....+ ....++|+||||++|..++.+... .++++++||+||+|++.+
T Consensus 984 La~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d 1060 (1724)
T 4f92_B 984 LAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG 1060 (1724)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS
T ss_pred HHHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC
Confidence 99999999987542 4566777776543322 223479999999999877765332 367899999999998876
Q ss_pred CCcHHHHHHHHHh-------CCCCCcEEEEEecCChHHHHHHHHhcc-CCceEeeccCCcccccCCeEEEEEeccCcch-
Q 007106 260 VGFAEDVEVILER-------LPQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEK- 330 (618)
Q Consensus 260 ~~~~~~~~~il~~-------l~~~~~~l~lSAT~~~~~~~~~~~~l~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k- 330 (618)
. .+..++.++.+ +++++|+|+||||+++. .+ +..|+. ++..+..+..... ...++.+.........
T Consensus 1061 ~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~d-la~WL~~~~~~~~~~~~~~R--PvpL~~~i~~~~~~~~~ 1135 (1724)
T 4f92_B 1061 E-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KD-VAHWLGCSATSTFNFHPNVR--PVPLELHIQGFNISHTQ 1135 (1724)
T ss_dssp T-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HH-HHHHHTCCSTTEEECCGGGC--SSCEEEEEEEECCCSHH
T ss_pred C-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HH-HHHHhCCCCCCeEEeCCCCC--CCCeEEEEEeccCCCch
Confidence 4 66666665544 45789999999999873 33 334443 2222222222111 1122222222222221
Q ss_pred ------hHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHc-----------------------------------cCC
Q 007106 331 ------PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-----------------------------------SYN 369 (618)
Q Consensus 331 ------~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-----------------------------------~~~ 369 (618)
...+...+....+.+++||||++++.|+.++..|.. ...
T Consensus 1136 ~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~G 1215 (1724)
T 4f92_B 1136 TRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNG 1215 (1724)
T ss_dssp HHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTT
T ss_pred hhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCC
Confidence 223344566666788999999999999988876632 124
Q ss_pred ccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEE----c------CCCCChhHHHHhhhccCCCCC
Q 007106 370 CEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH----Y------ELPNTSETFVHRTGRTGRAGK 439 (618)
Q Consensus 370 ~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~----~------~~p~~~~~~~Qr~GR~gR~g~ 439 (618)
+..+|++|++++|+.+++.|++|.++|||||+++++|||+|..++||. | ..|.++.+|+|++|||||.|.
T Consensus 1216 Ia~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~ 1295 (1724)
T 4f92_B 1216 VGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQ 1295 (1724)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTT
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCC
Confidence 667899999999999999999999999999999999999999888883 2 235689999999999999876
Q ss_pred --cceEEEEecchhHHHHHHH
Q 007106 440 --KGSAILIYTDQQARQVKSI 458 (618)
Q Consensus 440 --~g~~~~~~~~~~~~~~~~l 458 (618)
.|.|++++.+.+...++.+
T Consensus 1296 d~~G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1296 DDEGRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp CSCEEEEEEEEGGGHHHHHHH
T ss_pred CCceEEEEEecchHHHHHHHH
Confidence 7899999998877666554
No 38
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=2.6e-38 Score=343.47 Aligned_cols=310 Identities=14% Similarity=0.157 Sum_probs=227.5
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh--C
Q 007106 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES--A 197 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~--~ 197 (618)
.+|+++|.++++.+++++++|++++||+|||++++.+++..+.. ...++|||+||++|+.||++++.++ +
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~ 183 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRLF 183 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH--------CSSEEEEEESSHHHHHHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC--------CCCeEEEEECcHHHHHHHHHHHHHhhcC
Confidence 47999999999999999999999999999999999888877643 1348999999999999999999887 4
Q ss_pred CCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCC
Q 007106 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277 (618)
Q Consensus 198 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~ 277 (618)
+...+..++++.....+ +...++|+|+||+.|... ....+.++++|||||+|++.. ..+..++..+++..
T Consensus 184 ~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~ 253 (510)
T 2oca_A 184 SHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCM 253 (510)
T ss_dssp CGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCC
T ss_pred CccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCc
Confidence 45677777776654433 445689999999977542 224467899999999999753 66778888888889
Q ss_pred cEEEEEecCChHHHHHHH-HhccCCceEeeccCC--cccccCCeEEE--EEecc---------------------Ccchh
Q 007106 278 QSMMFSATMPPWIRSLTN-KYLKNPLTVDLVGDS--DQKLADGISLY--SIATS---------------------MYEKP 331 (618)
Q Consensus 278 ~~l~lSAT~~~~~~~~~~-~~l~~~~~i~~~~~~--~~~~~~~~~~~--~~~~~---------------------~~~k~ 331 (618)
++|+|||||++....... ..+..+..+...... ........... ..... ...+.
T Consensus 254 ~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (510)
T 2oca_A 254 FKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRN 333 (510)
T ss_dssp EEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHH
T ss_pred EEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHH
Confidence 999999999765422211 111222221111000 00000011111 11110 01122
Q ss_pred HHHHHHHHHh-cc-CCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEc-cccccCC
Q 007106 332 SIIGQLITEH-AK-GGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIAT-DVAARGL 407 (618)
Q Consensus 332 ~~l~~ll~~~-~~-~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT-~~~~~Gi 407 (618)
..+.+++... .. ..++||||+ ++.++.+++.|.+. ..+..+||+|++.+|+++++.|++++.+||||| +++++||
T Consensus 334 ~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~Gi 412 (510)
T 2oca_A 334 KWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGI 412 (510)
T ss_dssp HHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSC
T ss_pred HHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhccc
Confidence 2334444433 22 334555555 89999999999764 688999999999999999999999999999999 9999999
Q ss_pred CCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEec
Q 007106 408 DVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448 (618)
Q Consensus 408 di~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~ 448 (618)
|+|++++||++++|+++.+|+|++||+||.++.+.++++++
T Consensus 413 Dip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 413 SVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred ccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999999999999999999998775555544
No 39
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.3e-38 Score=345.51 Aligned_cols=318 Identities=21% Similarity=0.238 Sum_probs=219.3
Q ss_pred cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007106 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
.+. .|+++|..+++.+++++ |.+++||+|||++|++|++...+. +++++||+||++||.|+++++..+
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~---------g~~vlVltPTreLA~Q~~e~~~~l 138 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT---------GKGVHVVTVNDYLAQRDAENNRPL 138 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT---------SSCCEEEESSHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc---------CCcEEEEcCCHHHHHHHHHHHHHH
Confidence 354 69999999999999987 999999999999999999865432 568999999999999999998876
Q ss_pred CC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHH-HHHHHhcC------CCCCCccEEEEchhhhhc-cC------
Q 007106 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQML-SV------ 260 (618)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l-~~~l~~~~------~~l~~~~~vViDEaH~~~-~~------ 260 (618)
+. ++++.+++++.+.. .+.+...++|+|+||++| ++++.... +.++++.++||||||+|+ ++
T Consensus 139 ~~~lgl~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLI 216 (853)
T 2fsf_A 139 FEFLGLTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLI 216 (853)
T ss_dssp HHHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEE
T ss_pred HHhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccccc
Confidence 53 57888888887754 334455689999999999 78877542 567899999999999998 43
Q ss_pred ---------CcHHHHHHHHHhCCC--------------------CCcEE------------------------EEEecCC
Q 007106 261 ---------GFAEDVEVILERLPQ--------------------NRQSM------------------------MFSATMP 287 (618)
Q Consensus 261 ---------~~~~~~~~il~~l~~--------------------~~~~l------------------------~lSAT~~ 287 (618)
++...+..++..+++ .+|++ ++|||.+
T Consensus 217 iSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~ 296 (853)
T 2fsf_A 217 ISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANI 296 (853)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred ccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccc
Confidence 256677788877764 44543 7899976
Q ss_pred hHHHHHH-----HHhcc--------CC-----------------------------ceEeeccCCcccccCCeE------
Q 007106 288 PWIRSLT-----NKYLK--------NP-----------------------------LTVDLVGDSDQKLADGIS------ 319 (618)
Q Consensus 288 ~~~~~~~-----~~~l~--------~~-----------------------------~~i~~~~~~~~~~~~~~~------ 319 (618)
.....+. ..++. +. ..+.+.. +......+.
T Consensus 297 ~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~--e~~tla~It~qnyfr 374 (853)
T 2fsf_A 297 MLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQN--ENQTLASITFQNYFR 374 (853)
T ss_dssp ------------------------------------------------------------CCC--CCEEEEEEEHHHHHT
T ss_pred hHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecc--cccccceeehHHHHh
Confidence 4222211 11110 00 0010000 000000000
Q ss_pred -----------------------------------------EEEEeccCcchhHHHHHHHHH-hccCCeEEEEecchhHH
Q 007106 320 -----------------------------------------LYSIATSMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDA 357 (618)
Q Consensus 320 -----------------------------------------~~~~~~~~~~k~~~l~~ll~~-~~~~~~~lVf~~~~~~~ 357 (618)
...+..+..+|...+...+.+ +..+.++||||+|++.+
T Consensus 375 ~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~s 454 (853)
T 2fsf_A 375 LYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKS 454 (853)
T ss_dssp TSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHH
T ss_pred hhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHH
Confidence 001223445566666666654 34678999999999999
Q ss_pred HHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCc------------------------
Q 007106 358 DRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV------------------------ 412 (618)
Q Consensus 358 ~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~------------------------ 412 (618)
+.|++.|.+ .+++.++|+++.+.++..+...|+.| .|+|||++++||+||+..
T Consensus 455 e~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~ 532 (853)
T 2fsf_A 455 ELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKAD 532 (853)
T ss_dssp HHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHH
Confidence 999999966 49999999999888888888888887 599999999999999873
Q ss_pred -------------cEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhH
Q 007106 413 -------------DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452 (618)
Q Consensus 413 -------------~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 452 (618)
.+||+++.|.+...|.||+||+||.|.+|.+++|++..|.
T Consensus 533 ~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 533 WQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred hhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5999999999999999999999999999999999987663
No 40
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.4e-38 Score=342.22 Aligned_cols=291 Identities=20% Similarity=0.219 Sum_probs=217.9
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC
Q 007106 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~ 199 (618)
..|+|+|.++++.+++++++|+++|||+|||++++.++... +.++|||||+++|+.||++++.++ +
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------------~~~~Lvl~P~~~L~~Q~~~~~~~~--~ 157 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF--G 157 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------------CSCEEEEESSHHHHHHHHHHGGGG--C
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEECCHHHHHHHHHHHHhC--C
Confidence 46999999999999999899999999999999998887654 467999999999999999999994 4
Q ss_pred Cc-EEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCc
Q 007106 200 LD-TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278 (618)
Q Consensus 200 ~~-~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~ 278 (618)
+. +.+++++.. ...+|+|+||+.+...+... ..++++|||||+|++.+..+.. ++..+ +..+
T Consensus 158 ~~~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~ 220 (472)
T 2fwr_A 158 EEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPF 220 (472)
T ss_dssp GGGEEEBSSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSE
T ss_pred CcceEEECCCcC---------CcCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCe
Confidence 66 666665543 24689999999998766531 2468999999999998876543 44444 4678
Q ss_pred EEEEEecCChH-------------------HHHHHHHhccCCceEeeccCCccc---c---------------------c
Q 007106 279 SMMFSATMPPW-------------------IRSLTNKYLKNPLTVDLVGDSDQK---L---------------------A 315 (618)
Q Consensus 279 ~l~lSAT~~~~-------------------~~~~~~~~l~~~~~i~~~~~~~~~---~---------------------~ 315 (618)
+|+|||||++. ...+...++..+....+....... . .
T Consensus 221 ~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 300 (472)
T 2fwr_A 221 RLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRA 300 (472)
T ss_dssp EEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCC
T ss_pred EEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccch
Confidence 99999999731 222222222221111100000000 0 0
Q ss_pred CCeEEE---------------------EEeccCcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHccCCccccc
Q 007106 316 DGISLY---------------------SIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLH 374 (618)
Q Consensus 316 ~~~~~~---------------------~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~lh 374 (618)
..+... .+......|...+.+++.. ..+.++||||++++.++.+++.| .+..+|
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l----~~~~~~ 375 (472)
T 2fwr_A 301 EDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVF----LIPAIT 375 (472)
T ss_dssp SSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHT----TCCBCC
T ss_pred hhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHh----Ccceee
Confidence 000000 0001123345666677766 35789999999999999999887 377899
Q ss_pred cCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCc-ceEEEE
Q 007106 375 GDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKK-GSAILI 446 (618)
Q Consensus 375 g~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~-g~~~~~ 446 (618)
++++..+|+++++.|++++++|||||+++++|+|+|++++||++++|+++..|+|++||++|.++. +.++++
T Consensus 376 g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~ 448 (472)
T 2fwr_A 376 HRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 448 (472)
T ss_dssp SSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999865 455443
No 41
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=2.4e-39 Score=354.11 Aligned_cols=313 Identities=17% Similarity=0.181 Sum_probs=228.0
Q ss_pred CCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcH
Q 007106 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (618)
Q Consensus 104 ~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~ 183 (618)
+.+++.+.+.|... ...++|+|+.+++.+++++++|++++||||||++|++|++..+.. .+.++||++||+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--------~~~~vLvl~Ptr 225 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--------RRLRTLILAPTR 225 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCeEEEEcChH
Confidence 44555555544332 366788888889999999999999999999999999999988765 256899999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcH
Q 007106 184 ELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263 (618)
Q Consensus 184 ~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~ 263 (618)
+||.|+++.+.. ..+. ..... .. .....+..+.++|.+.+...+... ..+.++++|||||||++ +..+.
T Consensus 226 eLa~Qi~~~l~~----~~v~-~~~~~-l~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~ 294 (618)
T 2whx_A 226 VVAAEMEEALRG----LPIR-YQTPA-VK---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSV 294 (618)
T ss_dssp HHHHHHHHHTTT----SCEE-ECCTT-SS---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHH
T ss_pred HHHHHHHHHhcC----Ccee-Eeccc-ce---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHH
Confidence 999999998863 2222 11111 00 011123467788999888766655 34889999999999997 55567
Q ss_pred HHHHHHHHhCC-CCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHHhc
Q 007106 264 EDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA 342 (618)
Q Consensus 264 ~~~~~il~~l~-~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~ 342 (618)
..+..++..++ +++|+|+||||+++.+..+.. .++..+.+.... ........+.. +.+
T Consensus 295 ~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~---------------~~~~~~~ll~~-l~~-- 353 (618)
T 2whx_A 295 AARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI---------------PERSWNTGFDW-ITD-- 353 (618)
T ss_dssp HHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC---------------CSSCCSSSCHH-HHH--
T ss_pred HHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC---------------CHHHHHHHHHH-HHh--
Confidence 77777777765 689999999999875432211 122222221100 00111112222 222
Q ss_pred cCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEE------
Q 007106 343 KGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLI------ 415 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~V------ 415 (618)
...++||||++++.++.+++.|.+. +.+..+|++ +|+++++.|++|+.+|||||+++++|||+| +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~ 428 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRC 428 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcce
Confidence 3569999999999999999999764 889999984 688899999999999999999999999997 8888
Q ss_pred --------------EEcCCCCChhHHHHhhhccCCCCC-cceEEEEec---chhHHHHHHHHHHh
Q 007106 416 --------------IHYELPNTSETFVHRTGRTGRAGK-KGSAILIYT---DQQARQVKSIERDV 462 (618)
Q Consensus 416 --------------I~~~~p~~~~~~~Qr~GR~gR~g~-~g~~~~~~~---~~~~~~~~~l~~~l 462 (618)
|+++.|.+.++|+||+||+||.+. +|.|++|++ +.+...++.+++.+
T Consensus 429 ~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 429 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred ecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 777779999999999999999964 899999997 66666666666654
No 42
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.2e-37 Score=370.14 Aligned_cols=333 Identities=20% Similarity=0.282 Sum_probs=243.0
Q ss_pred CCCCChHHHHHHHHHHh-CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhc--CCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007106 118 GISKLFPIQKAVLEPAM-QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFH 194 (618)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~-~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~--~~~~~~~~lil~Pt~~La~q~~~~l~ 194 (618)
+|.+|+++|.++++.++ .++|+|++||||||||++|.++++..+.+..... ....+.++||++|+++|++|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 68899999999999876 5789999999999999999999999987643221 12346789999999999999999998
Q ss_pred HhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCC--CCCCccEEEEchhhhhccCCcHHHHHHHH
Q 007106 195 ESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL--NLSEVQFVVLDEADQMLSVGFAEDVEVIL 270 (618)
Q Consensus 195 ~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~--~l~~~~~vViDEaH~~~~~~~~~~~~~il 270 (618)
+.+. ++++..++|+.....+. ...++|+||||+++..++.+... .++++++|||||+|.+.+ ..+..++.++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 8765 35677777776544322 24589999999998665544321 267899999999997765 5777777665
Q ss_pred Hh-------CCCCCcEEEEEecCChHHHHHHHHhccCC-c-eEeeccCCcccccCCeEEEEEeccCcch---hH----HH
Q 007106 271 ER-------LPQNRQSMMFSATMPPWIRSLTNKYLKNP-L-TVDLVGDSDQKLADGISLYSIATSMYEK---PS----II 334 (618)
Q Consensus 271 ~~-------l~~~~~~l~lSAT~~~~~~~~~~~~l~~~-~-~i~~~~~~~~~~~~~~~~~~~~~~~~~k---~~----~l 334 (618)
.+ +++++|+|+||||+|+. . .+..|+... . .+..+.... .+..++...+....... .. .+
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N~-~-dvA~wL~~~~~~~~~~~~~~~--RPvpL~~~~~~~~~~~~~~~~~~~~~~~ 307 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPNY-E-DVATFLRVDPAKGLFYFDNSF--RPVPLEQTYVGITEKKAIKRFQIMNEIV 307 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTTH-H-HHHHHTTCCHHHHEEECCGGG--CSSCEEEECCEECCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCCH-H-HHHHHhCCCCCCCeEEECCCC--ccCccEEEEeccCCcchhhhhHHHHHHH
Confidence 43 46789999999999873 2 234455422 1 111111111 11122222222222211 11 22
Q ss_pred HHHHHHhccCCeEEEEecchhHHHHHHHHHHcc--------------------------------------CCccccccC
Q 007106 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS--------------------------------------YNCEPLHGD 376 (618)
Q Consensus 335 ~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--------------------------------------~~~~~lhg~ 376 (618)
...+.+...++++||||++++.|+.+++.|.+. ..+..+|++
T Consensus 308 ~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHag 387 (1724)
T 4f92_B 308 YEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAG 387 (1724)
T ss_dssp HHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSS
T ss_pred HHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCC
Confidence 233334445679999999999999888877431 125678999
Q ss_pred CCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEE----cCC------CCChhHHHHhhhccCCCC--CcceEE
Q 007106 377 ISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH----YEL------PNTSETFVHRTGRTGRAG--KKGSAI 444 (618)
Q Consensus 377 ~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~----~~~------p~~~~~~~Qr~GR~gR~g--~~g~~~ 444 (618)
|++++|..+++.|++|.++|||||+++++|||+|..++||. |++ |.++.+|.||+|||||.| ..|.++
T Consensus 388 L~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~i 467 (1724)
T 4f92_B 388 MTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGI 467 (1724)
T ss_dssp SCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEE
T ss_pred CCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEE
Confidence 99999999999999999999999999999999999999985 443 458999999999999976 578999
Q ss_pred EEecchhHHHHHHH
Q 007106 445 LIYTDQQARQVKSI 458 (618)
Q Consensus 445 ~~~~~~~~~~~~~l 458 (618)
+++.+.+...+..+
T Consensus 468 i~~~~~~~~~~~~l 481 (1724)
T 4f92_B 468 LITSHGELQYYLSL 481 (1724)
T ss_dssp EEEESTTCCHHHHH
T ss_pred EEecchhHHHHHHH
Confidence 99988776655443
No 43
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.3e-37 Score=338.03 Aligned_cols=320 Identities=18% Similarity=0.237 Sum_probs=243.6
Q ss_pred cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007106 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
.++ .|+++|..+++.+++++ |.+++||+|||++|.+|++...+. +..++||+||++||.|.++++..+
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~---------g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA---------GNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT---------TSCEEEEESSHHHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh---------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 577 79999999999999987 999999999999999999765433 567999999999999999988876
Q ss_pred CC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHH-HHHHHhc------CCCCCCccEEEEchhhhhc-cC------
Q 007106 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQML-SV------ 260 (618)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l-~~~l~~~------~~~l~~~~~vViDEaH~~~-~~------ 260 (618)
+. ++++.+++++.+... +.....++|+|+||++| ++++... .+.++.+.++||||||+|+ ++
T Consensus 176 ~~~lGLsv~~i~gg~~~~~--r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLi 253 (922)
T 1nkt_A 176 HRFLGLQVGVILATMTPDE--RRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLI 253 (922)
T ss_dssp HHHTTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEE
T ss_pred HhhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcccee
Confidence 53 578888888876433 33445689999999999 7777664 3567889999999999998 32
Q ss_pred ---------CcHHHHHHHHHhCC---------CCCcEE-----------------EEEecCChHHHHH---H--HHhcc-
Q 007106 261 ---------GFAEDVEVILERLP---------QNRQSM-----------------MFSATMPPWIRSL---T--NKYLK- 299 (618)
Q Consensus 261 ---------~~~~~~~~il~~l~---------~~~~~l-----------------~lSAT~~~~~~~~---~--~~~l~- 299 (618)
+|...+..++..++ +.+|++ ++|||.++....+ + ..++.
T Consensus 254 iSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~ 333 (922)
T 1nkt_A 254 ISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSR 333 (922)
T ss_dssp EEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCB
T ss_pred ecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhc
Confidence 47789999999997 678888 8899987533322 1 11221
Q ss_pred CCc------eEeeccCCccc----------------------------ccCCeE--------------------------
Q 007106 300 NPL------TVDLVGDSDQK----------------------------LADGIS-------------------------- 319 (618)
Q Consensus 300 ~~~------~i~~~~~~~~~----------------------------~~~~~~-------------------------- 319 (618)
+.. .+.++...... ....+.
T Consensus 334 d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~ 413 (922)
T 1nkt_A 334 DKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELH 413 (922)
T ss_dssp TTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHH
T ss_pred ccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHH
Confidence 110 01111100000 000000
Q ss_pred ------E---------------EEEeccCcchhHHHHHHHHH-hccCCeEEEEecchhHHHHHHHHHHc-cCCccccccC
Q 007106 320 ------L---------------YSIATSMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGD 376 (618)
Q Consensus 320 ------~---------------~~~~~~~~~k~~~l~~ll~~-~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~ 376 (618)
. ..+..+..+|...+...+.+ +..+.++||||++++.++.|++.|.+ .+++.++|++
T Consensus 414 ~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak 493 (922)
T 1nkt_A 414 EIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAK 493 (922)
T ss_dssp HHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSS
T ss_pred HHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCC
Confidence 0 01223334466666665544 35677999999999999999999966 4999999999
Q ss_pred CCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCc--------------------------------------------
Q 007106 377 ISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV-------------------------------------------- 412 (618)
Q Consensus 377 ~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~-------------------------------------------- 412 (618)
+.+.++..+...|+.| .|+|||++++||+||+..
T Consensus 494 ~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (922)
T 1nkt_A 494 YHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEA 571 (922)
T ss_dssp CHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred hhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhh
Confidence 8888887777778777 699999999999999974
Q ss_pred --------cEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhH
Q 007106 413 --------DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452 (618)
Q Consensus 413 --------~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 452 (618)
.+||+++.|.+...|.||+||+||.|.+|.+++|++..|.
T Consensus 572 ~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 572 KEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred hHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4999999999999999999999999999999999987664
No 44
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=2.4e-39 Score=342.38 Aligned_cols=286 Identities=17% Similarity=0.190 Sum_probs=191.7
Q ss_pred HHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcch
Q 007106 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPI 211 (618)
Q Consensus 132 ~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~ 211 (618)
.+++++++|+++|||||||++|++|++..+.. .++++||++||++||.|+++.+..+ .+.........
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~--------~~~~~lil~Ptr~La~Q~~~~l~~~----~v~~~~~~~~~ 71 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR--------RRLRTLVLAPTRVVLSEMKEAFHGL----DVKFHTQAFSA 71 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTS----CEEEESSCCCC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh--------cCCeEEEEcchHHHHHHHHHHHhcC----CeEEeccccee
Confidence 46778999999999999999999999987754 2568999999999999999998743 22221111000
Q ss_pred hhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhC-CCCCcEEEEEecCChHH
Q 007106 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMMFSATMPPWI 290 (618)
Q Consensus 212 ~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l-~~~~~~l~lSAT~~~~~ 290 (618)
....+.-+-+.+...+...+. ....+.++++|||||+|++ +..+...+..+...+ +.++|+|+||||+++.+
T Consensus 72 -----v~Tp~~l~~~l~~~~l~~~~~-~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~ 144 (440)
T 1yks_A 72 -----HGSGREVIDAMCHATLTYRML-EPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTS 144 (440)
T ss_dssp -----CCCSSCCEEEEEHHHHHHHHT-SSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCC
T ss_pred -----ccCCccceeeecccchhHhhh-CcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchh
Confidence 000011122333344433322 2345889999999999997 322222222232222 36799999999998753
Q ss_pred HHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CC
Q 007106 291 RSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YN 369 (618)
Q Consensus 291 ~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~ 369 (618)
..+.. ....+ ...........+...+..+.+ .++++||||++++.++.+++.|.+. +.
T Consensus 145 ~~~~~----~~~~~--------------~~~~~~~~~~~~~~~~~~l~~---~~~~~lVF~~s~~~a~~l~~~L~~~~~~ 203 (440)
T 1yks_A 145 DEFPH----SNGEI--------------EDVQTDIPSEPWNTGHDWILA---DKRPTAWFLPSIRAANVMAASLRKAGKS 203 (440)
T ss_dssp CSSCC----CSSCE--------------EEEECCCCSSCCSSSCHHHHH---CCSCEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred hhhhh----cCCCe--------------eEeeeccChHHHHHHHHHHHh---cCCCEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 32211 11111 111111111112222222222 3579999999999999999999764 88
Q ss_pred ccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEE-------------------cCCCCChhHHHHh
Q 007106 370 CEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH-------------------YELPNTSETFVHR 430 (618)
Q Consensus 370 ~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~-------------------~~~p~~~~~~~Qr 430 (618)
+..+|+ ++|+++++.|++|+++|||||+++++|||+| +++||+ ++.|.++++|+||
T Consensus 204 v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr 278 (440)
T 1yks_A 204 VVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQR 278 (440)
T ss_dssp EEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHH
T ss_pred EEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHh
Confidence 999999 4688999999999999999999999999999 999986 8889999999999
Q ss_pred hhccCCC-CCcceEEEEe---cchhHHHHHHHHHHh
Q 007106 431 TGRTGRA-GKKGSAILIY---TDQQARQVKSIERDV 462 (618)
Q Consensus 431 ~GR~gR~-g~~g~~~~~~---~~~~~~~~~~l~~~l 462 (618)
+||+||. +++|.|++++ ++.+...++.++..+
T Consensus 279 ~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 279 RGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp HTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred ccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 9999997 7899999996 566666666666654
No 45
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=3.5e-38 Score=341.09 Aligned_cols=278 Identities=19% Similarity=0.248 Sum_probs=210.1
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC
Q 007106 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~ 199 (618)
..++++|+++++.+..++++|+++|||||||++|++++++. +.++||++||++||.|+++.+.+.+.
T Consensus 216 lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------------g~~vLVl~PTReLA~Qia~~l~~~~g- 282 (666)
T 3o8b_A 216 SPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------------GYKVLVLNPSVAATLGFGAYMSKAHG- 282 (666)
T ss_dssp SCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------------TCCEEEEESCHHHHHHHHHHHHHHHS-
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------------CCeEEEEcchHHHHHHHHHHHHHHhC-
Confidence 34667777777778888899999999999999998887652 55899999999999999998877653
Q ss_pred CcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCc-
Q 007106 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ- 278 (618)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~- 278 (618)
..+....++.. +...++|+|+||++| +....+.+.++++|||||||+ ++.++...+..+++.++...+
T Consensus 283 ~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~-l~~~~~~~l~~Il~~l~~~~~~ 351 (666)
T 3o8b_A 283 IDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHS-TDSTTILGIGTVLDQAETAGAR 351 (666)
T ss_dssp CCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTC-CSHHHHHHHHHHHHHTTTTTCS
T ss_pred CCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchh-cCccHHHHHHHHHHhhhhcCCc
Confidence 34444555433 345689999999998 455667788999999999985 455677788889999987766
Q ss_pred -EEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHHhccCCeEEEEecchhHH
Q 007106 279 -SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDA 357 (618)
Q Consensus 279 -~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~ 357 (618)
+++||||+++.+. ...+....+.... ...+... ..+.. + +..+.+++||||++++++
T Consensus 352 llil~SAT~~~~i~------~~~p~i~~v~~~~----~~~i~~~------~~~~~-----l-~~~~~~~vLVFv~Tr~~a 409 (666)
T 3o8b_A 352 LVVLATATPPGSVT------VPHPNIEEVALSN----TGEIPFY------GKAIP-----I-EAIRGGRHLIFCHSKKKC 409 (666)
T ss_dssp EEEEEESSCTTCCC------CCCTTEEEEECBS----CSSEEET------TEEEC-----G-GGSSSSEEEEECSCHHHH
T ss_pred eEEEECCCCCcccc------cCCcceEEEeecc----cchhHHH------Hhhhh-----h-hhccCCcEEEEeCCHHHH
Confidence 7788999987311 1111111110000 0011100 00000 0 122567999999999999
Q ss_pred HHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEE----------EcC-------
Q 007106 358 DRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLII----------HYE------- 419 (618)
Q Consensus 358 ~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI----------~~~------- 419 (618)
+.+++.|.+. +.+..+|++|++++ |.++..+|||||+++++|||++ +++|| |||
T Consensus 410 e~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl 481 (666)
T 3o8b_A 410 DELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTI 481 (666)
T ss_dssp HHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEE
T ss_pred HHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccc
Confidence 9999999764 88999999999875 4566679999999999999996 99988 677
Q ss_pred ----CCCChhHHHHhhhccCCCCCcceEEEEecchhHH
Q 007106 420 ----LPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453 (618)
Q Consensus 420 ----~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 453 (618)
.|.+.++|+||+||+|| +++|. ++|+++.+..
T Consensus 482 ~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 482 ETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERP 517 (666)
T ss_dssp EEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBC
T ss_pred ccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhh
Confidence 89999999999999999 89999 8888876543
No 46
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.2e-37 Score=330.95 Aligned_cols=286 Identities=18% Similarity=0.191 Sum_probs=209.1
Q ss_pred CCCCChHHHHHHHHHHhCCCCE-EEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007106 118 GISKLFPIQKAVLEPAMQGRDM-IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~-ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
|+..++|+|+ +++.+++++++ |+++|||||||++|++|++..+.. .+.++||++||++|+.|+++.+..
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g- 70 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--------RRLRTLILAPTRVVAAEMEEALRG- 70 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTT-
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh--------cCCcEEEECCCHHHHHHHHHHhcC-
Confidence 4567889885 79999998886 999999999999999999887654 257899999999999999998853
Q ss_pred CCCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHH-hCCC
Q 007106 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE-RLPQ 275 (618)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~-~l~~ 275 (618)
+.+.. ...... ........|.++|++.|.+.+... ..+.++++|||||||++ +..+...+..+.. ..++
T Consensus 71 ---~~v~~--~~~~~~---~~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~ 140 (451)
T 2jlq_A 71 ---LPIRY--QTPAVK---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMG 140 (451)
T ss_dssp ---SCEEE--CCTTCS---CCCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTT
T ss_pred ---ceeee--eecccc---ccCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCC
Confidence 22221 111100 011234579999999998777655 45889999999999976 3222222222222 2346
Q ss_pred CCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHHhccCCeEEEEecchh
Q 007106 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKR 355 (618)
Q Consensus 276 ~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~ 355 (618)
++|+|+||||+++.+..+ +..++..+....... .. .... +...+.+ ..+++||||++++
T Consensus 141 ~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~p---~~---------~~~~----~~~~l~~--~~~~~lVF~~s~~ 199 (451)
T 2jlq_A 141 EAAAIFMTATPPGSTDPF---PQSNSPIEDIEREIP---ER---------SWNT----GFDWITD--YQGKTVWFVPSIK 199 (451)
T ss_dssp SCEEEEECSSCTTCCCSS---CCCSSCEEEEECCCC---SS---------CCSS----SCHHHHH--CCSCEEEECSSHH
T ss_pred CceEEEEccCCCccchhh---hcCCCceEecCccCC---ch---------hhHH----HHHHHHh--CCCCEEEEcCCHH
Confidence 799999999998743221 222333222210000 00 0001 1122332 3569999999999
Q ss_pred HHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcC---------------
Q 007106 356 DADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYE--------------- 419 (618)
Q Consensus 356 ~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~--------------- 419 (618)
.++.+++.|.+. +.+..+|+++. +++++.|++|+.+|||||+++++|||+|+ ++||+++
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l 274 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERV 274 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccccee
Confidence 999999999764 78888998753 57899999999999999999999999999 9999998
Q ss_pred -----CCCChhHHHHhhhccCCCCC-cceEEEEecc
Q 007106 420 -----LPNTSETFVHRTGRTGRAGK-KGSAILIYTD 449 (618)
Q Consensus 420 -----~p~~~~~~~Qr~GR~gR~g~-~g~~~~~~~~ 449 (618)
.|.+.++|+||+||+||.++ ++.|++++..
T Consensus 275 ~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 275 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8889888743
No 47
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=5.7e-37 Score=343.60 Aligned_cols=334 Identities=17% Similarity=0.225 Sum_probs=241.8
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCC-CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeE
Q 007106 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (618)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~-~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~ 176 (618)
...|+.+++++.+.+.+...+ ..|++.|+++|+.++.+ +++++++|||||||+ ++|++..... .. ...+.++
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~--~~--~~~g~~i 143 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDE--MP--HLENTQV 143 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHH--CG--GGGTCEE
T ss_pred CCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhc--cc--cCCCceE
Confidence 346889999999999998887 66899999998887754 679999999999998 4555522111 11 1125679
Q ss_pred EEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhh
Q 007106 177 LVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (618)
Q Consensus 177 lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~ 256 (618)
+|++|+++|+.|+++.+.+.+. ..+....+..... ........+|+|+||+++.+.+.... .+.++++|||||+|.
T Consensus 144 lvl~P~r~La~q~~~~l~~~~~-~~v~~~vG~~i~~--~~~~~~~~~I~v~T~G~l~r~l~~~~-~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 144 ACTQPRRVAAMSVAQRVAEEMD-VKLGEEVGYSIRF--ENKTSNKTILKYMTDGMLLREAMEDH-DLSRYSCIILDEAHE 219 (773)
T ss_dssp EEEESCHHHHHHHHHHHHHHTT-CCBTTTEEEEETT--EEECCTTCSEEEEEHHHHHHHHHHST-TCTTEEEEEECSGGG
T ss_pred EecCchHHHHHHHHHHHHHHhC-Cchhheecceecc--ccccCCCCCEEEECHHHHHHHHhhCc-cccCCCEEEecCccc
Confidence 9999999999999998876542 2111111110000 01112457899999999998877653 488999999999995
Q ss_pred -hccCCc-HHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhH-H
Q 007106 257 -MLSVGF-AEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS-I 333 (618)
Q Consensus 257 -~~~~~~-~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~-~ 333 (618)
.++..+ ...+..++. ..++.++|+||||++.. .+..++.+...+.+.... ..+.+++......+... .
T Consensus 220 R~ld~d~~~~~l~~l~~-~~~~~~iIl~SAT~~~~---~l~~~~~~~~vi~v~gr~-----~pv~~~~~~~~~~~~~~~~ 290 (773)
T 2xau_A 220 RTLATDILMGLLKQVVK-RRPDLKIIIMSATLDAE---KFQRYFNDAPLLAVPGRT-----YPVELYYTPEFQRDYLDSA 290 (773)
T ss_dssp CCHHHHHHHHHHHHHHH-HCTTCEEEEEESCSCCH---HHHHHTTSCCEEECCCCC-----CCEEEECCSSCCSCHHHHH
T ss_pred cccchHHHHHHHHHHHH-hCCCceEEEEeccccHH---HHHHHhcCCCcccccCcc-----cceEEEEecCCchhHHHHH
Confidence 444322 223333333 34678999999999752 334555555444432211 22344433333333332 2
Q ss_pred HHHHHHHh--ccCCeEEEEecchhHHHHHHHHHHc------------cCCccccccCCCHHHHHHHHHHHh-----cCCc
Q 007106 334 IGQLITEH--AKGGKCIVFTQTKRDADRLAHAMAK------------SYNCEPLHGDISQSQRERTLSAFR-----DGRF 394 (618)
Q Consensus 334 l~~ll~~~--~~~~~~lVf~~~~~~~~~l~~~L~~------------~~~~~~lhg~~~~~~r~~i~~~f~-----~g~~ 394 (618)
+..+++.+ ...+++||||+++++++.+++.|.+ .+.+..+|++|++++|+++++.|. +|..
T Consensus 291 l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~ 370 (773)
T 2xau_A 291 IRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGR 370 (773)
T ss_dssp HHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCE
T ss_pred HHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCce
Confidence 33333222 2467999999999999999999863 356889999999999999999999 9999
Q ss_pred cEEEEccccccCCCCCCccEEEEcCC------------------CCChhHHHHhhhccCCCCCcceEEEEecchhH
Q 007106 395 NILIATDVAARGLDVPNVDLIIHYEL------------------PNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452 (618)
Q Consensus 395 ~vLVaT~~~~~Gidi~~~~~VI~~~~------------------p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 452 (618)
+|||||+++++|||||++++||+++. |.+.++|+||+||+||. .+|.|++++++.+.
T Consensus 371 kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 371 KVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred EEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 99999999999999999999999887 88999999999999999 89999999987765
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=2.4e-38 Score=348.05 Aligned_cols=296 Identities=17% Similarity=0.197 Sum_probs=209.3
Q ss_pred CChHHHH-----HHHHHHh------CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHH
Q 007106 121 KLFPIQK-----AVLEPAM------QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (618)
Q Consensus 121 ~l~~~Q~-----~~i~~i~------~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~ 189 (618)
.|+++|+ ++|+.++ +++++|+++|||||||++|++|++..+.. .+.++||++||++||.|+
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~--------~~~~~lilaPTr~La~Q~ 286 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ--------KRLRTAVLAPTRVVAAEM 286 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEccHHHHHHHH
Confidence 7899999 9999888 88999999999999999999999988654 257899999999999999
Q ss_pred HHHHHHhCCCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHH
Q 007106 190 EKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269 (618)
Q Consensus 190 ~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~i 269 (618)
++.+..+. + ........ .....+.-+-+.+...+.+.+... ..+.++++|||||||++ +..+...+..+
T Consensus 287 ~~~l~~~~--i--~~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~~~~~~~~~~l 355 (673)
T 2wv9_A 287 AEALRGLP--V--RYLTPAVQ-----REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-DPASIAARGYI 355 (673)
T ss_dssp HHHTTTSC--C--EECCC--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-CHHHHHHHHHH
T ss_pred HHHHhcCC--e--eeeccccc-----ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-CccHHHHHHHH
Confidence 99987542 1 11100000 001112235566667776555554 56889999999999997 21122233333
Q ss_pred HHhC-CCCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHHhccCCeEE
Q 007106 270 LERL-PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCI 348 (618)
Q Consensus 270 l~~l-~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~l 348 (618)
...+ +.++|+|+||||+++.+..+.. ....+. ..............+..+ .+ .++++|
T Consensus 356 ~~~~~~~~~~vl~~SAT~~~~i~~~~~----~~~~i~--------------~v~~~~~~~~~~~~l~~l-~~--~~~~~l 414 (673)
T 2wv9_A 356 ATRVEAGEAAAIFMTATPPGTSDPFPD----TNSPVH--------------DVSSEIPDRAWSSGFEWI-TD--YAGKTV 414 (673)
T ss_dssp HHHHHTTSCEEEEECSSCTTCCCSSCC----CSSCEE--------------EEECCCCSSCCSSCCHHH-HS--CCSCEE
T ss_pred HHhccccCCcEEEEcCCCChhhhhhcc----cCCceE--------------EEeeecCHHHHHHHHHHH-Hh--CCCCEE
Confidence 3333 2678999999999875322111 111110 000001111112222222 22 467999
Q ss_pred EEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEE----------
Q 007106 349 VFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH---------- 417 (618)
Q Consensus 349 Vf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~---------- 417 (618)
|||+++++++.+++.|.+. +.+..+|++ +|+++++.|++|+.+|||||+++++|||+| +++||+
T Consensus 415 VF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi 489 (673)
T 2wv9_A 415 WFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTIL 489 (673)
T ss_dssp EECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEE
T ss_pred EEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceee
Confidence 9999999999999999764 889999994 788999999999999999999999999999 999998
Q ss_pred ----------cCCCCChhHHHHhhhccCCC-CCcceEEEEe---cchhHHHHHHHHHH
Q 007106 418 ----------YELPNTSETFVHRTGRTGRA-GKKGSAILIY---TDQQARQVKSIERD 461 (618)
Q Consensus 418 ----------~~~p~~~~~~~Qr~GR~gR~-g~~g~~~~~~---~~~~~~~~~~l~~~ 461 (618)
++.|.+.++|+||+||+||. +++|.|++|+ ++.+...++.++..
T Consensus 490 ~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~ 547 (673)
T 2wv9_A 490 DEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAK 547 (673)
T ss_dssp CSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHH
T ss_pred ecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHH
Confidence 56889999999999999998 7899999996 45565545544443
No 49
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=7e-36 Score=329.64 Aligned_cols=315 Identities=17% Similarity=0.175 Sum_probs=193.2
Q ss_pred CChHHHHHHHHHHhC----C-CCEEEEccCCChhHHHHHHHHHHHHHHHhh-hcCCCCCCeEEEEcCcHHHHHHHH-HHH
Q 007106 121 KLFPIQKAVLEPAMQ----G-RDMIGRARTGTGKTLAFGIPILDKIIKFNE-KHGRGRNPLCLVLAPTRELAKQVE-KEF 193 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~----~-~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~-~~~~~~~~~~lil~Pt~~La~q~~-~~l 193 (618)
.|+++|.++++.+++ + ++++++++||+|||++++..+. .+.+... ........++||||||++|+.||+ +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~-~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISW-KLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHH-HHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHH-HHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 699999999998875 3 5689999999999999755444 3433110 001114678999999999999999 777
Q ss_pred HHhCCCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHH----hcCCCCCCccEEEEchhhhhccCCcHHHHHHH
Q 007106 194 HESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIK----RNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269 (618)
Q Consensus 194 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~----~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~i 269 (618)
+.+.. .+..+.+ .......+|+|+||++|...+. ...+...++++|||||||++.... ...+..+
T Consensus 257 ~~~~~--~~~~~~~--------~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~i 325 (590)
T 3h1t_A 257 TPFGD--ARHKIEG--------GKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREI 325 (590)
T ss_dssp TTTCS--SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHH
T ss_pred Hhcch--hhhhhhc--------cCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHH
Confidence 66533 2222221 1233457999999999987664 233456779999999999986542 3566777
Q ss_pred HHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeeccC-CcccccCCeEEEEEecc----------------------
Q 007106 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD-SDQKLADGISLYSIATS---------------------- 326 (618)
Q Consensus 270 l~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~-~~~~~~~~~~~~~~~~~---------------------- 326 (618)
+..++ ..++|+|||||..........++..+........ .............+...
T Consensus 326 l~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (590)
T 3h1t_A 326 LEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPD 404 (590)
T ss_dssp HHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-------------------
T ss_pred HHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccccc
Confidence 77775 4789999999985443333333333222110000 00000000000000000
Q ss_pred ----Cc---------chhH----HHHHHHHHhccCCeEEEEecchhHHHHHHHHHHccC---------CccccccCCCHH
Q 007106 327 ----MY---------EKPS----IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSY---------NCEPLHGDISQS 380 (618)
Q Consensus 327 ----~~---------~k~~----~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~---------~~~~lhg~~~~~ 380 (618)
.. .+.. .+..++....+..++||||++++.++.+++.|.+.. .+..+||.+++
T Consensus 405 ~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~- 483 (590)
T 3h1t_A 405 GEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK- 483 (590)
T ss_dssp ----CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-
T ss_pred ccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-
Confidence 00 0111 122334444456799999999999999999996532 15678888754
Q ss_pred HHHHHHHHHhcCCcc---EEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCC---cceEEEEecc
Q 007106 381 QRERTLSAFRDGRFN---ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGK---KGSAILIYTD 449 (618)
Q Consensus 381 ~r~~i~~~f~~g~~~---vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~---~g~~~~~~~~ 449 (618)
+|+++++.|++++.+ |||||+++++|||+|++++||++++|+++..|+|++||++|.+. +..++++...
T Consensus 484 ~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 484 IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 799999999998765 88999999999999999999999999999999999999999874 3444444444
No 50
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.9e-34 Score=312.16 Aligned_cols=329 Identities=18% Similarity=0.196 Sum_probs=223.1
Q ss_pred CCChHHHHHHHHHHh----CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007106 120 SKLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~----~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
..|+|||.++++++. .+.++|+.++||+|||++++..+.. +.. .....++|||||+ +|+.||.+++.+
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~-~~~------~~~~~~~LIv~P~-~l~~qw~~e~~~ 107 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSD-AKK------ENELTPSLVICPL-SVLKNWEEELSK 107 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHH-HHH------TTCCSSEEEEECS-TTHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHH-HHh------cCCCCCEEEEccH-HHHHHHHHHHHH
Confidence 459999999998773 5678999999999999987554443 322 1224579999995 689999999999
Q ss_pred hCCCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCC
Q 007106 196 SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275 (618)
Q Consensus 196 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~ 275 (618)
+++.+++.+.++.... .....++|+|+|++.+..... +...++++||+||||++.+.. ......+..++
T Consensus 108 ~~~~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~- 176 (500)
T 1z63_A 108 FAPHLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK- 176 (500)
T ss_dssp HCTTSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-
T ss_pred HCCCceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-
Confidence 9988887776655421 122347999999999965443 224578999999999997653 33455566664
Q ss_pred CCcEEEEEecCChH-HHHHHH------------------------------------HhccCCceEeeccCC---ccccc
Q 007106 276 NRQSMMFSATMPPW-IRSLTN------------------------------------KYLKNPLTVDLVGDS---DQKLA 315 (618)
Q Consensus 276 ~~~~l~lSAT~~~~-~~~~~~------------------------------------~~l~~~~~i~~~~~~---~~~~~ 315 (618)
..++++|||||... ..++.. .++ .+..+...... ...+.
T Consensus 177 ~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~lp 255 (500)
T 1z63_A 177 SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIINDLP 255 (500)
T ss_dssp EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTTSC
T ss_pred cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhcCC
Confidence 46789999999532 111110 111 12222111000 00011
Q ss_pred CCeEEE-EEec-------------------------------------------------------cCcchhHHHHHHHH
Q 007106 316 DGISLY-SIAT-------------------------------------------------------SMYEKPSIIGQLIT 339 (618)
Q Consensus 316 ~~~~~~-~~~~-------------------------------------------------------~~~~k~~~l~~ll~ 339 (618)
...... .+.. ....|...+.+++.
T Consensus 256 ~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~ 335 (500)
T 1z63_A 256 DKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIE 335 (500)
T ss_dssp SEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHH
Confidence 111111 1100 11223334445555
Q ss_pred Hh-ccCCeEEEEecchhHHHHHHHHHHc--cCCccccccCCCHHHHHHHHHHHhcC-Ccc-EEEEccccccCCCCCCccE
Q 007106 340 EH-AKGGKCIVFTQTKRDADRLAHAMAK--SYNCEPLHGDISQSQRERTLSAFRDG-RFN-ILIATDVAARGLDVPNVDL 414 (618)
Q Consensus 340 ~~-~~~~~~lVf~~~~~~~~~l~~~L~~--~~~~~~lhg~~~~~~r~~i~~~f~~g-~~~-vLVaT~~~~~Gidi~~~~~ 414 (618)
+. .++.++||||+++..++.+++.|.+ .+.+..+||++++.+|+++++.|+++ ..+ +||+|+++++|+|++.+++
T Consensus 336 ~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~ 415 (500)
T 1z63_A 336 EALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANR 415 (500)
T ss_dssp HHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSE
T ss_pred HHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCE
Confidence 44 3578999999999999999999975 58889999999999999999999998 454 7999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCccc
Q 007106 415 IIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQ 468 (618)
Q Consensus 415 VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 468 (618)
||++|+||++..|.|++||++|.|++..|.++..-......+.+.+.+..+...
T Consensus 416 vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l 469 (500)
T 1z63_A 416 VIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSL 469 (500)
T ss_dssp EEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSS
T ss_pred EEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887775544332222334444444443333
No 51
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=3.4e-35 Score=338.00 Aligned_cols=333 Identities=15% Similarity=0.171 Sum_probs=225.8
Q ss_pred CCChHHHHHHHHHHhCC--CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC
Q 007106 120 SKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~--~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
..|+|||.+++..++.. .++|++++||+|||++++..+...+.. +...++|||||+ +|+.||.+++.+++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~-------g~~~rvLIVvP~-sLl~Qw~~E~~~~f 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS-------GAAERVLIIVPE-TLQHQWLVEMLRRF 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT-------SSCCCEEEECCT-TTHHHHHHHHHHHS
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh-------CCCCeEEEEeCH-HHHHHHHHHHHHHh
Confidence 56999999999988874 479999999999999997777665533 224579999999 99999999998877
Q ss_pred CCCcEEEEEcCcchhhhhH--HhhcCCCEEEEChHHHHHHHHh-cCCCCCCccEEEEchhhhhccCCcH-HHHHHHHHhC
Q 007106 198 PSLDTICVYGGTPISHQMR--ALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVVLDEADQMLSVGFA-EDVEVILERL 273 (618)
Q Consensus 198 ~~~~~~~~~g~~~~~~~~~--~l~~~~~Ilv~T~~~l~~~l~~-~~~~l~~~~~vViDEaH~~~~~~~~-~~~~~il~~l 273 (618)
++.+.++++......... ......+|+|+|++.|...... ..+...++++|||||||++.+.... .....++..+
T Consensus 224 -~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L 302 (968)
T 3dmq_A 224 -NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQL 302 (968)
T ss_dssp -CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHH
T ss_pred -CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHH
Confidence 466655543322111110 1112479999999988542111 1122457899999999998765421 1112222222
Q ss_pred -CCCCcEEEEEecCCh----HHHHHHH----------------------------HhccC-C------------c-----
Q 007106 274 -PQNRQSMMFSATMPP----WIRSLTN----------------------------KYLKN-P------------L----- 302 (618)
Q Consensus 274 -~~~~~~l~lSAT~~~----~~~~~~~----------------------------~~l~~-~------------~----- 302 (618)
....++++|||||.. ++..++. .++.. + .
T Consensus 303 ~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~ 382 (968)
T 3dmq_A 303 AEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDI 382 (968)
T ss_dssp HTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCS
T ss_pred hhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhh
Confidence 345679999999842 0111000 00000 0 0
Q ss_pred ----------------------------------eEeeccCCcccc-cCCeEEEEE------------------------
Q 007106 303 ----------------------------------TVDLVGDSDQKL-ADGISLYSI------------------------ 323 (618)
Q Consensus 303 ----------------------------------~i~~~~~~~~~~-~~~~~~~~~------------------------ 323 (618)
.+.......... ......+..
T Consensus 383 ~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 462 (968)
T 3dmq_A 383 EPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAED 462 (968)
T ss_dssp STTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGG
T ss_pred HHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHH
Confidence 000000000000 000000000
Q ss_pred ---------------------eccCcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHc--cCCccccccCCCHH
Q 007106 324 ---------------------ATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK--SYNCEPLHGDISQS 380 (618)
Q Consensus 324 ---------------------~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~--~~~~~~lhg~~~~~ 380 (618)
......|...+..++.. .++.++||||+++..++.+++.|.+ .+.+..+||+|++.
T Consensus 463 ~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~ 541 (968)
T 3dmq_A 463 RARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSII 541 (968)
T ss_dssp GTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTT
T ss_pred HHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 11222356666777766 3578999999999999999999984 58899999999999
Q ss_pred HHHHHHHHHhcCC--ccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHH
Q 007106 381 QRERTLSAFRDGR--FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458 (618)
Q Consensus 381 ~r~~i~~~f~~g~--~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 458 (618)
+|+++++.|++++ ++|||||+++++|||+|++++||++|+|+++..|+|++||++|.|+.+.|++++...+....+.+
T Consensus 542 ~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i 621 (968)
T 3dmq_A 542 ERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVL 621 (968)
T ss_dssp HHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHH
T ss_pred HHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHH
Confidence 9999999999998 99999999999999999999999999999999999999999999999987777654433333333
Q ss_pred HHHh
Q 007106 459 ERDV 462 (618)
Q Consensus 459 ~~~l 462 (618)
.+.+
T Consensus 622 ~~~~ 625 (968)
T 3dmq_A 622 VRWY 625 (968)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=5.7e-35 Score=308.31 Aligned_cols=268 Identities=16% Similarity=0.182 Sum_probs=188.6
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhh
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~ 215 (618)
++++|+++|||||||++|++|++..+.. .+.+++|++||++|+.|+++.+. ++.+....+....
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~--------~g~~~lvl~Pt~~La~Q~~~~~~----~~~v~~~~~~~~~---- 65 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVK--------KRLRTVILAPTRVVASEMYEALR----GEPIRYMTPAVQS---- 65 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTT----TSCEEEC----------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCCEEEECcHHHHHHHHHHHhC----CCeEEEEecCccc----
Confidence 5789999999999999999999866544 25689999999999999998876 3444443332111
Q ss_pred HHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhC-CCCCcEEEEEecCChHHHHHH
Q 007106 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMMFSATMPPWIRSLT 294 (618)
Q Consensus 216 ~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l-~~~~~~l~lSAT~~~~~~~~~ 294 (618)
.......+.+.|.+.+.+.+.. ...+.++++|||||+|++ +..+......+.... ++++|+|+||||+++.+..+.
T Consensus 66 -~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~ 142 (431)
T 2v6i_A 66 -ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFP 142 (431)
T ss_dssp ----CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSC
T ss_pred -cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhc
Confidence 1112345777899988776666 456889999999999996 322233333333332 568999999999997422111
Q ss_pred HHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHc-cCCcccc
Q 007106 295 NKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPL 373 (618)
Q Consensus 295 ~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~l 373 (618)
.. .+..+.. ....... +...+..++.+ ..+++||||+++++++.+++.|.+ .+.+..+
T Consensus 143 ~~---~~~i~~~---------------~~~~~~~-~~~~~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~l 201 (431)
T 2v6i_A 143 PS---NSPIIDE---------------ETRIPDK-AWNSGYEWITE--FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYL 201 (431)
T ss_dssp CC---SSCCEEE---------------ECCCCSS-CCSSCCHHHHS--CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CC---CCceeec---------------cccCCHH-HHHHHHHHHHc--CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEe
Confidence 00 0111110 0000111 11112233333 256899999999999999999976 4889999
Q ss_pred ccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccE-----------------EEEcCCCCChhHHHHhhhccCC
Q 007106 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDL-----------------IIHYELPNTSETFVHRTGRTGR 436 (618)
Q Consensus 374 hg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~-----------------VI~~~~p~~~~~~~Qr~GR~gR 436 (618)
|++ +|+++++.|++|+.+|||||+++++|||+| +.+ ||+++.|.++.+|+||+||+||
T Consensus 202 hg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR 276 (431)
T 2v6i_A 202 NRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGR 276 (431)
T ss_dssp STT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSC
T ss_pred CCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCC
Confidence 987 577899999999999999999999999999 544 6788999999999999999999
Q ss_pred CCCcceEEEEec
Q 007106 437 AGKKGSAILIYT 448 (618)
Q Consensus 437 ~g~~g~~~~~~~ 448 (618)
.+..+.|++++.
T Consensus 277 ~g~~~~~~~~~~ 288 (431)
T 2v6i_A 277 NPEKLGDIYAYS 288 (431)
T ss_dssp CTTCCCCEEEEC
T ss_pred CCCCCCeEEEEc
Confidence 986554544443
No 53
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.5e-35 Score=315.33 Aligned_cols=275 Identities=19% Similarity=0.214 Sum_probs=192.2
Q ss_pred HHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEE
Q 007106 127 KAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY 206 (618)
Q Consensus 127 ~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~ 206 (618)
......+.+++++|+++|||||||++|++|++..+.. .++++||++||++|+.|+++.+.. ..+....
T Consensus 12 ~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g----~~v~~~~ 79 (459)
T 2z83_A 12 RGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ--------QRLRTAVLAPTRVVAAEMAEALRG----LPVRYQT 79 (459)
T ss_dssp ---CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEECSHHHHHHHHHHTTT----SCEEECC
T ss_pred HHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCCcEEEECchHHHHHHHHHHhcC----ceEeEEe
Confidence 3344556677899999999999999999999988764 257899999999999999999873 2222111
Q ss_pred cCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhh-----ccCCcHHHHHHHHHhCCCCCcEEE
Q 007106 207 GGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM-----LSVGFAEDVEVILERLPQNRQSMM 281 (618)
Q Consensus 207 g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~-----~~~~~~~~~~~il~~l~~~~~~l~ 281 (618)
.... ........+.++|...+...+... ..+.++++|||||||++ +..++... +. ..++.|+|+
T Consensus 80 ~~~~-----~~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~----~~-~~~~~~~il 148 (459)
T 2z83_A 80 SAVQ-----REHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIAT----KV-ELGEAAAIF 148 (459)
T ss_dssp -------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHH----HH-HTTSCEEEE
T ss_pred cccc-----cCCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHH----Hh-ccCCccEEE
Confidence 1100 001223457788998887766654 45889999999999973 22211111 11 136889999
Q ss_pred EEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHHhccCCeEEEEecchhHHHHHH
Q 007106 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLA 361 (618)
Q Consensus 282 lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~ 361 (618)
||||++..+..+... ..|... + .. ..... +...+..++.+ ..+++||||++++.++.++
T Consensus 149 ~SAT~~~~~~~~~~~--~~pi~~-~-~~--------------~~~~~-~~~~~~~~l~~--~~~~~LVF~~s~~~~~~l~ 207 (459)
T 2z83_A 149 MTATPPGTTDPFPDS--NAPIHD-L-QD--------------EIPDR-AWSSGYEWITE--YAGKTVWFVASVKMGNEIA 207 (459)
T ss_dssp ECSSCTTCCCSSCCC--SSCEEE-E-EC--------------CCCSS-CCSSCCHHHHH--CCSCEEEECSCHHHHHHHH
T ss_pred EEcCCCcchhhhccC--CCCeEE-e-cc--------------cCCcc-hhHHHHHHHHh--cCCCEEEEeCChHHHHHHH
Confidence 999998753221110 111111 0 00 00000 01111223333 2579999999999999999
Q ss_pred HHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEE--------------------cCC
Q 007106 362 HAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH--------------------YEL 420 (618)
Q Consensus 362 ~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~--------------------~~~ 420 (618)
+.|.+. +.+..+|++ +|+++++.|++|+.+|||||+++++|||+|+ ++||+ |+.
T Consensus 208 ~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~ 282 (459)
T 2z83_A 208 MCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPS 282 (459)
T ss_dssp HHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCE
T ss_pred HHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCC
Confidence 999764 888999985 6778999999999999999999999999999 99999 779
Q ss_pred CCChhHHHHhhhccCCCCC-cceEEEEecch
Q 007106 421 PNTSETFVHRTGRTGRAGK-KGSAILIYTDQ 450 (618)
Q Consensus 421 p~~~~~~~Qr~GR~gR~g~-~g~~~~~~~~~ 450 (618)
|.+..+|+||+||+||.+. +|.|++++.+.
T Consensus 283 p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 283 PITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp ECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 9999999999999999987 99999999875
No 54
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=2.2e-33 Score=273.61 Aligned_cols=214 Identities=36% Similarity=0.646 Sum_probs=191.9
Q ss_pred CCCCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCC
Q 007106 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172 (618)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~ 172 (618)
..+.+..+|+++++++.+++.|.+.++..|+++|.++++.+++++++++++|||+|||++|++|++..+..... .....
T Consensus 23 ~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~-~~~~~ 101 (242)
T 3fe2_A 23 NCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPF-LERGD 101 (242)
T ss_dssp CCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCC-CCTTC
T ss_pred CCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccc-cccCC
Confidence 34567778999999999999999999999999999999999999999999999999999999999988764221 12234
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vV 250 (618)
++++||++||++|+.|+++.++++.. .+.+.+++++.....+...+..+++|+|+||++|.+.+......+.++++||
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lV 181 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLV 181 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEE
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEE
Confidence 67899999999999999999988643 5778888999888888888888899999999999999998888899999999
Q ss_pred EchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEeec
Q 007106 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307 (618)
Q Consensus 251 iDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~ 307 (618)
+||||++.+++|...+..++..+++++|+++||||+++.+..++..++.+|..+.+.
T Consensus 182 iDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~ 238 (242)
T 3fe2_A 182 LDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG 238 (242)
T ss_dssp ETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred EeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999999999999999999999999999999999888763
No 55
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=272.19 Aligned_cols=212 Identities=36% Similarity=0.552 Sum_probs=180.6
Q ss_pred CCCCCCCccC-CCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCC
Q 007106 94 SKDEGLDISK-LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172 (618)
Q Consensus 94 ~~~~~~~~~~-~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~ 172 (618)
.+.+...|++ +++++++++.|.+.++.+|+++|+++++.+++++++++++|||+|||++|++|++..+...........
T Consensus 14 ~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~ 93 (228)
T 3iuy_A 14 IPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRN 93 (228)
T ss_dssp CCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------C
T ss_pred CCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccC
Confidence 4455667887 799999999999999999999999999999999999999999999999999999988754332222335
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhC-CCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESA-PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~-~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vVi 251 (618)
++++||++||++|+.|+++++.++. ..+.+.+++++.....+...+..+++|+|+||++|.+.+......+.++++||+
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVI 173 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEE
Confidence 7889999999999999999999975 467788888888877777778888999999999999999888888999999999
Q ss_pred chhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEe
Q 007106 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVD 305 (618)
Q Consensus 252 DEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~ 305 (618)
||||++.+++|...+..++..+++++|+++||||+++.++.++..++.+|..+.
T Consensus 174 DEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 174 DEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred ECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 999999999999999999999999999999999999999999999999887664
No 56
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.8e-32 Score=260.43 Aligned_cols=200 Identities=35% Similarity=0.578 Sum_probs=179.9
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEE
Q 007106 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (618)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~li 178 (618)
..|+++++++++++.|.+.++.+|+++|+++++.+++++++++++|||+|||++|++|++..+.. ...++++||
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~------~~~~~~~li 76 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL------KKDNIQAMV 76 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT------TSCSCCEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc------cCCCeeEEE
Confidence 46889999999999999999999999999999999999999999999999999999999887532 123568999
Q ss_pred EcCcHHHHHHHHHHHHHhCC---CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhh
Q 007106 179 LAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (618)
Q Consensus 179 l~Pt~~La~q~~~~l~~~~~---~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH 255 (618)
++||++|+.|+++.+.++.. .+.+..++++.....+...+...++|+|+||++|.+.+......+.++++||+||||
T Consensus 77 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah 156 (206)
T 1vec_A 77 IVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEAD 156 (206)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHH
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChH
Confidence 99999999999999988764 567788888887777767777789999999999999998887888999999999999
Q ss_pred hhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceE
Q 007106 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304 (618)
Q Consensus 256 ~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i 304 (618)
++.+.++...+..++..+++++|+++||||+++.+..++..++.+|..+
T Consensus 157 ~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 157 KLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999899999999999999899999999999999999999999888654
No 57
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1.5e-32 Score=261.29 Aligned_cols=204 Identities=48% Similarity=0.834 Sum_probs=184.5
Q ss_pred CccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEE
Q 007106 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (618)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil 179 (618)
.|+++++++++.+.|.+.++..|+++|+++++.+++++++++++|||+|||++|++|++..+.... ....++++||+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~---~~~~~~~~lil 78 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ---ERGRKPRALVL 78 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC---CTTCCCSEEEE
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc---ccCCCCcEEEE
Confidence 588999999999999999999999999999999999999999999999999999999988764311 12346789999
Q ss_pred cCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhcc
Q 007106 180 APTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (618)
Q Consensus 180 ~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~ 259 (618)
+||++|+.|+++++.++++.+++..++++.....+...+...++|+|+||+++.+.+....+.+.++++||+||||++.+
T Consensus 79 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 158 (207)
T 2gxq_A 79 TPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLS 158 (207)
T ss_dssp CSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHH
T ss_pred ECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhc
Confidence 99999999999999999888888888988887777777777899999999999999988888899999999999999999
Q ss_pred CCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEee
Q 007106 260 VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (618)
Q Consensus 260 ~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~ 306 (618)
+++...+..++..+++++|+++||||+++.+..+...++.+|..+.+
T Consensus 159 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 159 MGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp TTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred cchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 99999999999999999999999999999999999999999887653
No 58
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=7.5e-33 Score=265.64 Aligned_cols=202 Identities=34% Similarity=0.587 Sum_probs=180.5
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEE
Q 007106 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (618)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~li 178 (618)
..|+++++++.+++.|++.++.+|+++|+++++.+++++++++++|||+|||++|++|++..+.. ...+.++||
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~------~~~~~~~li 77 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP------ERAEVQAVI 77 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT------TSCSCCEEE
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh------CcCCceEEE
Confidence 46889999999999999999999999999999999999999999999999999999999887642 123578999
Q ss_pred EcCcHHHHHHHHHHHHHhCC------CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEc
Q 007106 179 LAPTRELAKQVEKEFHESAP------SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (618)
Q Consensus 179 l~Pt~~La~q~~~~l~~~~~------~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViD 252 (618)
++||++|+.|++++++++.. .+.+..++++.......+.+...++|+|+||++|.+.+....+.+.++++||+|
T Consensus 78 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViD 157 (219)
T 1q0u_A 78 TAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVD 157 (219)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEEC
T ss_pred EcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEc
Confidence 99999999999999988764 456777788877666666666678999999999999998877778899999999
Q ss_pred hhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEee
Q 007106 253 EADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (618)
Q Consensus 253 EaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~ 306 (618)
|||++.++++...+..++..+++++|+++||||+++.+.+++..++.+|..+.+
T Consensus 158 Eah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~ 211 (219)
T 1q0u_A 158 EADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 211 (219)
T ss_dssp SHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred CchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEe
Confidence 999999999999999999999999999999999999999999999999987765
No 59
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=9.3e-33 Score=302.65 Aligned_cols=281 Identities=18% Similarity=0.195 Sum_probs=204.9
Q ss_pred HHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcch
Q 007106 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPI 211 (618)
Q Consensus 132 ~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~ 211 (618)
..++++++++++|||||||+. ++..+.. ....+|++||++||.|+++.+.+. ++.+..++|+...
T Consensus 151 r~l~rk~vlv~apTGSGKT~~----al~~l~~---------~~~gl~l~PtR~LA~Qi~~~l~~~--g~~v~lltG~~~~ 215 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTYH----AIQKYFS---------AKSGVYCGPLKLLAHEIFEKSNAA--GVPCDLVTGEERV 215 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHHH----HHHHHHH---------SSSEEEEESSHHHHHHHHHHHHHT--TCCEEEECSSCEE
T ss_pred HhcCCCEEEEEcCCCCCHHHH----HHHHHHh---------cCCeEEEeCHHHHHHHHHHHHHhc--CCcEEEEECCeeE
Confidence 446778999999999999983 3333333 234699999999999999999886 5677777777653
Q ss_pred hhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCC-CCCcEEEEEecCChHH
Q 007106 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSMMFSATMPPWI 290 (618)
Q Consensus 212 ~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~-~~~~~l~lSAT~~~~~ 290 (618)
.. ..-....+++++|++.+. ....+++|||||+|++.+.++...+..++..++ ...+++++|||.+ .+
T Consensus 216 iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~-~i 284 (677)
T 3rc3_A 216 TV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID-LV 284 (677)
T ss_dssp CC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH-HH
T ss_pred Ee--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHH-HH
Confidence 11 001123689999975442 246789999999999999999999999999988 6789999999953 23
Q ss_pred HHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CC
Q 007106 291 RSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YN 369 (618)
Q Consensus 291 ~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~ 369 (618)
..+.... .....+...... .... ....... .+... ....+|||+++++++.+++.|.+. +.
T Consensus 285 ~~l~~~~-~~~~~v~~~~r~-----~~l~---~~~~~l~-------~l~~~--~~g~iIf~~s~~~ie~la~~L~~~g~~ 346 (677)
T 3rc3_A 285 MELMYTT-GEEVEVRDYKRL-----TPIS---VLDHALE-------SLDNL--RPGDCIVCFSKNDIYSVSRQIEIRGLE 346 (677)
T ss_dssp HHHHHHH-TCCEEEEECCCS-----SCEE---ECSSCCC-------SGGGC--CTTEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhc-CCceEEEEeeec-----chHH---HHHHHHH-------HHHhc--CCCCEEEEcCHHHHHHHHHHHHhcCCC
Confidence 3333322 233333211100 0000 0000000 11111 234588899999999999999764 88
Q ss_pred ccccccCCCHHHHHHHHHHHhc--CCccEEEEccccccCCCCCCccEEEEcCC--------------CCChhHHHHhhhc
Q 007106 370 CEPLHGDISQSQRERTLSAFRD--GRFNILIATDVAARGLDVPNVDLIIHYEL--------------PNTSETFVHRTGR 433 (618)
Q Consensus 370 ~~~lhg~~~~~~r~~i~~~f~~--g~~~vLVaT~~~~~Gidi~~~~~VI~~~~--------------p~~~~~~~Qr~GR 433 (618)
+..+||+|++++|+++++.|++ |+++|||||+++++|||+ ++++||+++. |.+..+|+||+||
T Consensus 347 v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GR 425 (677)
T 3rc3_A 347 SAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGR 425 (677)
T ss_dssp CEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTT
T ss_pred eeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcC
Confidence 9999999999999999999999 889999999999999999 9999999999 7799999999999
Q ss_pred cCCCCCc---ceEEEEecchhHHHHHHH
Q 007106 434 TGRAGKK---GSAILIYTDQQARQVKSI 458 (618)
Q Consensus 434 ~gR~g~~---g~~~~~~~~~~~~~~~~l 458 (618)
|||.++. |.|++++.. +...++.+
T Consensus 426 AGR~g~~g~~G~v~~l~~~-d~~~~~~~ 452 (677)
T 3rc3_A 426 AGRFSSRFKEGEVTTMNHE-DLSLLKEI 452 (677)
T ss_dssp BTCTTSSCSSEEEEESSTT-HHHHHHHH
T ss_pred CCCCCCCCCCEEEEEEecc-hHHHHHHH
Confidence 9999864 666665544 33344433
No 60
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=4.5e-32 Score=264.96 Aligned_cols=204 Identities=35% Similarity=0.587 Sum_probs=182.7
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeE
Q 007106 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~ 176 (618)
+...|+++++++.+.+.|++.++..|+++|+++++.+++++++++++|||+|||++|++|++..+... ....++
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~------~~~~~~ 114 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET------PQRLFA 114 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS------CCSSCE
T ss_pred ccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC------CCCceE
Confidence 34568899999999999999999999999999999999999999999999999999999999887652 225689
Q ss_pred EEEcCcHHHHHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHh-cCCCCCCccEEEEch
Q 007106 177 LVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVVLDE 253 (618)
Q Consensus 177 lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~-~~~~l~~~~~vViDE 253 (618)
||++||++|+.|++++++++.. ++.+.+++++.....+...+...++|+|+||++|.+.+.. ..+.+.++++||+||
T Consensus 115 lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDE 194 (249)
T 3ber_A 115 LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 194 (249)
T ss_dssp EEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECS
T ss_pred EEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcC
Confidence 9999999999999999988754 4677888888887777777778899999999999998876 456788999999999
Q ss_pred hhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEee
Q 007106 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (618)
Q Consensus 254 aH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~ 306 (618)
||++.+++|...+..++..+++++|+++||||+++.+.+++..++.+|..+.+
T Consensus 195 ah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 195 ADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999999999999999999999999999999987753
No 61
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=2.9e-32 Score=263.49 Aligned_cols=208 Identities=33% Similarity=0.524 Sum_probs=178.8
Q ss_pred CCCCCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCC
Q 007106 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRG 171 (618)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~ 171 (618)
+..+.+...|+++++++.+.+.|++.++..|+++|+++++.+++++++++++|||+|||++|++|++..+.. ..
T Consensus 17 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~------~~ 90 (230)
T 2oxc_A 17 DVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL------EN 90 (230)
T ss_dssp -------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------TS
T ss_pred CCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh------cC
Confidence 334445567999999999999999999999999999999999999999999999999999999999887643 12
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhCC---CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccE
Q 007106 172 RNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 172 ~~~~~lil~Pt~~La~q~~~~l~~~~~---~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~ 248 (618)
.+.++||++||++|+.|++++++++.. .+++.+++++.....+...+ ..++|+|+||++|.+.+....+.+.++++
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~ 169 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRL 169 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCE
Confidence 357899999999999999999998763 56788888887766655544 46899999999999999887777889999
Q ss_pred EEEchhhhhccCC-cHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEee
Q 007106 249 VVLDEADQMLSVG-FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (618)
Q Consensus 249 vViDEaH~~~~~~-~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~ 306 (618)
||+||||++.+++ |...+..++..++..+|+++||||+++.+..++..++.+|..+.+
T Consensus 170 lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 170 FILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp EEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred EEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999987 999999999999989999999999999999999999988877643
No 62
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=9.6e-32 Score=261.11 Aligned_cols=209 Identities=31% Similarity=0.538 Sum_probs=180.3
Q ss_pred CCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007106 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (618)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~ 174 (618)
..+..+|+++++++.+.+.|.+.++..|+++|+++++.+++++++++++|||+|||++|++|++..+.+... ....+.
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~--~~~~~~ 98 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW--TSTDGL 98 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC--CGGGCC
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc--cccCCc
Confidence 345567999999999999999999999999999999999999999999999999999999999988765321 112367
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhCCC--CcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhc-CCCCCCccEEEE
Q 007106 175 LCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVL 251 (618)
Q Consensus 175 ~~lil~Pt~~La~q~~~~l~~~~~~--~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~-~~~l~~~~~vVi 251 (618)
++||++||++|+.|+++.++++... +.+.+++++.....+...+ ..++|+|+||++|.+.+... .+.+.++++||+
T Consensus 99 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 99 GVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 8999999999999999999998754 6677778877665555444 46899999999999888765 466789999999
Q ss_pred chhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEee
Q 007106 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (618)
Q Consensus 252 DEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~ 306 (618)
||||++.++++...+..++..+++.+|+++||||+++.+..+...++.+|..+.+
T Consensus 178 DEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~ 232 (236)
T 2pl3_A 178 DEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWV 232 (236)
T ss_dssp TTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEEC
T ss_pred eChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEe
Confidence 9999999999999999999999999999999999999999999999999887754
No 63
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=3e-32 Score=264.60 Aligned_cols=205 Identities=33% Similarity=0.551 Sum_probs=172.6
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCe
Q 007106 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (618)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~ 175 (618)
.+..+|+++++++.+++.|.+.++..|+++|+++++.+++++++++++|||+|||++|++|++..+.. ...+.+
T Consensus 27 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~------~~~~~~ 100 (237)
T 3bor_A 27 EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI------EFKETQ 100 (237)
T ss_dssp CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT------TSCSCC
T ss_pred CccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh------cCCCce
Confidence 34567999999999999999999999999999999999999999999999999999999999887632 123568
Q ss_pred EEEEcCcHHHHHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhhcC-CCEEEEChHHHHHHHHhcCCCCCCccEEEEc
Q 007106 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (618)
Q Consensus 176 ~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~-~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViD 252 (618)
+||++||++|+.|+++.++++.. .+.+..++++.....+...+... ++|+|+||++|.+.+....+.+.++++||+|
T Consensus 101 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViD 180 (237)
T 3bor_A 101 ALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLD 180 (237)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEE
T ss_pred EEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEEC
Confidence 99999999999999999999875 45667777777666555555554 8999999999999998887888899999999
Q ss_pred hhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEee
Q 007106 253 EADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (618)
Q Consensus 253 EaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~ 306 (618)
|||++.++++...+..++..+++.+|+++||||+++.+..++..++.+|..+.+
T Consensus 181 Eah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 181 EADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp SHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred CchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 999999999999999999999999999999999999999999999998877754
No 64
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.8e-31 Score=295.31 Aligned_cols=320 Identities=13% Similarity=0.170 Sum_probs=216.2
Q ss_pred CCChHHHHHHHHHHh---------CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHH
Q 007106 120 SKLFPIQKAVLEPAM---------QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~---------~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 190 (618)
..|+|||.+++..+. .+..+|+..+||+|||++++..+...+...... .....++|||||+ +|+.||.
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~--~p~~~~~LiV~P~-sll~qW~ 130 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDC--KPEIDKVIVVSPS-SLVRNWY 130 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTS--SCSCSCEEEEECH-HHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccc--cCCCCcEEEEecH-HHHHHHH
Confidence 459999999999874 345699999999999999876666544321111 1123469999996 8999999
Q ss_pred HHHHHhCCC-CcEEEEEcCcchhhhhH--H-hh-----cCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCC
Q 007106 191 KEFHESAPS-LDTICVYGGTPISHQMR--A-LD-----YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261 (618)
Q Consensus 191 ~~l~~~~~~-~~~~~~~g~~~~~~~~~--~-l~-----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~ 261 (618)
+++.++++. +.++.++++........ . +. ..++|+|+|++.+.... ..+....+++||+||||++.+..
T Consensus 131 ~E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~~ 208 (644)
T 1z3i_X 131 NEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNSD 208 (644)
T ss_dssp HHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTTC
T ss_pred HHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCChh
Confidence 999998764 55666666543221111 1 11 13789999999997543 23444578999999999987643
Q ss_pred cHHHHHHHHHhCCCCCcEEEEEecCChHH----H---------------HHHHHhc------------------------
Q 007106 262 FAEDVEVILERLPQNRQSMMFSATMPPWI----R---------------SLTNKYL------------------------ 298 (618)
Q Consensus 262 ~~~~~~~il~~l~~~~~~l~lSAT~~~~~----~---------------~~~~~~l------------------------ 298 (618)
......+..++ ..+.++|||||.... . .+...|.
T Consensus 209 --~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~ 285 (644)
T 1z3i_X 209 --NQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQ 285 (644)
T ss_dssp --HHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHH
T ss_pred --hHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHH
Confidence 33444444553 457899999984321 0 0000000
Q ss_pred -----cCCceEeeccCC-cccccCCeEEEEE-------------------------------------------------
Q 007106 299 -----KNPLTVDLVGDS-DQKLADGISLYSI------------------------------------------------- 323 (618)
Q Consensus 299 -----~~~~~i~~~~~~-~~~~~~~~~~~~~------------------------------------------------- 323 (618)
..+..+...... ...++........
T Consensus 286 ~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l 365 (644)
T 1z3i_X 286 ELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPAL 365 (644)
T ss_dssp HHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHH
T ss_pred HHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHH
Confidence 000000000000 0000000000000
Q ss_pred ----------------------------eccCcchhHHHHHHHHHhc--cCCeEEEEecchhHHHHHHHHHHc-cCCccc
Q 007106 324 ----------------------------ATSMYEKPSIIGQLITEHA--KGGKCIVFTQTKRDADRLAHAMAK-SYNCEP 372 (618)
Q Consensus 324 ----------------------------~~~~~~k~~~l~~ll~~~~--~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~ 372 (618)
......|...+..++.... .+.++||||+++..++.+++.|.. .+.+..
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~ 445 (644)
T 1z3i_X 366 IYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVR 445 (644)
T ss_dssp HHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEE
Confidence 0011223344555555442 468999999999999999999965 488999
Q ss_pred cccCCCHHHHHHHHHHHhcCCc---cEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEe
Q 007106 373 LHGDISQSQRERTLSAFRDGRF---NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447 (618)
Q Consensus 373 lhg~~~~~~r~~i~~~f~~g~~---~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~ 447 (618)
+||.++.++|+++++.|+++.. .+||+|+++++|||++.+++||++|+||++..+.|++||++|.|++..|.++.
T Consensus 446 l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~ 523 (644)
T 1z3i_X 446 LDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYR 523 (644)
T ss_dssp ECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEE
T ss_pred EeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEE
Confidence 9999999999999999999865 48999999999999999999999999999999999999999999887665543
No 65
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-32 Score=307.95 Aligned_cols=316 Identities=18% Similarity=0.258 Sum_probs=223.7
Q ss_pred CCChHHHHHHHHHHh----CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007106 120 SKLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~----~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
..|+|||.+++.++. .+.++||+.+||+|||++++..+...+... .....+||||| .+|+.||.+++.+
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~------~~~~~~LIV~P-~sll~qW~~E~~~ 307 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR------RQNGPHIIVVP-LSTMPAWLDTFEK 307 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH------SCCSCEEEECC-TTTHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc------CCCCCEEEEEC-chHHHHHHHHHHH
Confidence 369999999998776 678899999999999998866655443321 12456899999 5889999999999
Q ss_pred hCCCCcEEEEEcCcchhhhhHHh------------hcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcH
Q 007106 196 SAPSLDTICVYGGTPISHQMRAL------------DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263 (618)
Q Consensus 196 ~~~~~~~~~~~g~~~~~~~~~~l------------~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~ 263 (618)
+++.+.+.+.++........... ...++|+|+|++.+...... +....+++|||||||++.+. .
T Consensus 308 ~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~--~ 383 (800)
T 3mwy_W 308 WAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNA--E 383 (800)
T ss_dssp HSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCS--S
T ss_pred HCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCc--h
Confidence 99999988887776544433321 13478999999999765432 22346899999999999764 3
Q ss_pred HHHHHHHHhCCCCCcEEEEEecCCh----HHHHHHHHhcc-----------------------------CCceEeeccCC
Q 007106 264 EDVEVILERLPQNRQSMMFSATMPP----WIRSLTNKYLK-----------------------------NPLTVDLVGDS 310 (618)
Q Consensus 264 ~~~~~il~~l~~~~~~l~lSAT~~~----~~~~~~~~~l~-----------------------------~~~~i~~~~~~ 310 (618)
..+...+..+ ...+.++|||||.. ++..++..+.. .+..+......
T Consensus 384 s~~~~~l~~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~d 462 (800)
T 3mwy_W 384 SSLYESLNSF-KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKD 462 (800)
T ss_dssp SHHHHHHTTS-EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGG
T ss_pred hHHHHHHHHh-hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHh
Confidence 3445555555 34567899999831 12222111100 01111000000
Q ss_pred -cccccCCeEEE-EEe----------------------------------------------------------------
Q 007106 311 -DQKLADGISLY-SIA---------------------------------------------------------------- 324 (618)
Q Consensus 311 -~~~~~~~~~~~-~~~---------------------------------------------------------------- 324 (618)
...++...... .+.
T Consensus 463 v~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~ 542 (800)
T 3mwy_W 463 VEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKM 542 (800)
T ss_dssp GTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----C
T ss_pred hhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccc
Confidence 00000000000 000
Q ss_pred ---------ccCcchhHHHHHHHHHhc-cCCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCC
Q 007106 325 ---------TSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR 393 (618)
Q Consensus 325 ---------~~~~~k~~~l~~ll~~~~-~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~ 393 (618)
.....|...+..++.... .+.++||||+....++.|.+.|.. .+.+..+||.++..+|+++++.|+++.
T Consensus 543 ~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~ 622 (800)
T 3mwy_W 543 TRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPD 622 (800)
T ss_dssp CSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTT
T ss_pred cHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCC
Confidence 001224455666666553 467999999999999999999964 588999999999999999999999855
Q ss_pred c---cEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEe
Q 007106 394 F---NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447 (618)
Q Consensus 394 ~---~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~ 447 (618)
. .+|++|.++++|||++.+++||++|+||++..+.|++||++|.|++..|.++.
T Consensus 623 ~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyr 679 (800)
T 3mwy_W 623 SNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYR 679 (800)
T ss_dssp CSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEE
T ss_pred CCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEE
Confidence 4 59999999999999999999999999999999999999999999877665543
No 66
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.4e-31 Score=257.89 Aligned_cols=203 Identities=33% Similarity=0.558 Sum_probs=173.2
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeE
Q 007106 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~ 176 (618)
....|+++++++.+++.|...++..|+++|+++++.+++++++++++|||+|||++|++|++..+.. ...++++
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~------~~~~~~~ 85 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------SVKAPQA 85 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------TCCSCCE
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc------cCCCceE
Confidence 4457999999999999999999999999999999999999999999999999999999999887632 1235789
Q ss_pred EEEcCcHHHHHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchh
Q 007106 177 LVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (618)
Q Consensus 177 lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEa 254 (618)
||++|+++|+.|+++.+.++.. .+.+..++++.....+...+.. ++|+|+||++|.+.+......+.++++||+|||
T Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEa 164 (224)
T 1qde_A 86 LMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEA 164 (224)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred EEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEEcCh
Confidence 9999999999999999998865 4567777777665555544444 899999999999999888888899999999999
Q ss_pred hhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEee
Q 007106 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (618)
Q Consensus 255 H~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~ 306 (618)
|++.++++...+..++..+++..|+++||||+++.+..+...++.+|..+.+
T Consensus 165 h~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~ 216 (224)
T 1qde_A 165 DEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 216 (224)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC-
T ss_pred hHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999999999999999999999999999999999999887754
No 67
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.9e-31 Score=262.65 Aligned_cols=204 Identities=33% Similarity=0.535 Sum_probs=175.5
Q ss_pred CCCccCCC--CCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCe
Q 007106 98 GLDISKLD--ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (618)
Q Consensus 98 ~~~~~~~~--l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~ 175 (618)
...|+++. +++++++.|+..++..|+++|.++++.++.++++|+++|||+|||++|++|++..+.+.... ...+.+
T Consensus 51 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~--~~~~~~ 128 (262)
T 3ly5_A 51 DTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM--PRNGTG 128 (262)
T ss_dssp GGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC--GGGCCC
T ss_pred cCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc--ccCCce
Confidence 34566666 99999999999999999999999999999999999999999999999999999988753211 123678
Q ss_pred EEEEcCcHHHHHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcC-CCCCCccEEEEc
Q 007106 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA-LNLSEVQFVVLD 252 (618)
Q Consensus 176 ~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~-~~l~~~~~vViD 252 (618)
+||++||++|+.|+++.+++++. .+.+..++++.....+...+..+++|+|+||++|.+.+.... +.+.++++||||
T Consensus 129 ~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViD 208 (262)
T 3ly5_A 129 VLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVID 208 (262)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEEC
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEc
Confidence 99999999999999999999875 356677888888777777777789999999999998887653 678899999999
Q ss_pred hhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCce
Q 007106 253 EADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLT 303 (618)
Q Consensus 253 EaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~ 303 (618)
|||++.+++|...+..++..++..+|+|+||||+++.+..+...++.++..
T Consensus 209 Eah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~~ 259 (262)
T 3ly5_A 209 EADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPL 259 (262)
T ss_dssp SHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCCE
T ss_pred ChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCCe
Confidence 999999999999999999999999999999999999999999988876543
No 68
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.98 E-value=1.4e-31 Score=268.32 Aligned_cols=201 Identities=27% Similarity=0.448 Sum_probs=175.4
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCC--CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007106 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~--~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~ 174 (618)
...+|+++++++.+++.|...+|..|+++|.++|+.++.+ +++|+++|||||||++|++|++..+.. ....+
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~------~~~~~ 163 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------ANKYP 163 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCT------TSCSC
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhc------cCCCc
Confidence 4567999999999999999999999999999999999987 899999999999999999999988643 23356
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhCC---CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHh-cCCCCCCccEEE
Q 007106 175 LCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVV 250 (618)
Q Consensus 175 ~~lil~Pt~~La~q~~~~l~~~~~---~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~-~~~~l~~~~~vV 250 (618)
++|||+||++||.|+++.+.++.. .+.+.+.+++....... ...++|+|+||++|++++.. ..+.+.++++||
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lV 240 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 240 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEE
Confidence 899999999999999999988753 56677777766543322 45689999999999999866 456788999999
Q ss_pred Echhhhhcc-CCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEee
Q 007106 251 LDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (618)
Q Consensus 251 iDEaH~~~~-~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~ 306 (618)
|||||++++ .+|...+..++..+++++|+++||||+++.+..++..++.+|..+.+
T Consensus 241 lDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~ 297 (300)
T 3fmo_B 241 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 297 (300)
T ss_dssp ETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEE
T ss_pred EeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEe
Confidence 999999997 67899999999999999999999999999999999999999988865
No 69
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.98 E-value=9.9e-32 Score=263.90 Aligned_cols=210 Identities=36% Similarity=0.603 Sum_probs=182.6
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhh---cCCCCC
Q 007106 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK---HGRGRN 173 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~---~~~~~~ 173 (618)
+...|+++++++.++++|...++..|+++|.++++.+++++++++++|||+|||++|++|++..+...... .....+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 45679999999999999999999999999999999999999999999999999999999999887642211 011235
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHhCC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEE
Q 007106 174 PLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (618)
Q Consensus 174 ~~~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vVi 251 (618)
+++||++||++|+.|++++++++.. .+.+..++++.....+...+...++|+|+||++|.+.+....+.+.++++||+
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 6899999999999999999998764 46677788888777777777778999999999999999988888999999999
Q ss_pred chhhhhccCCcHHHHHHHHHhC--CC--CCcEEEEEecCChHHHHHHHHhccCCceEee
Q 007106 252 DEADQMLSVGFAEDVEVILERL--PQ--NRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (618)
Q Consensus 252 DEaH~~~~~~~~~~~~~il~~l--~~--~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~ 306 (618)
||||++.+++|...+..++..+ +. ++|+++||||+++.+..+...++.++..+.+
T Consensus 181 DEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 239 (253)
T 1wrb_A 181 DEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 239 (253)
T ss_dssp ETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEE
T ss_pred eCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEE
Confidence 9999999999999999999854 33 6899999999999999999999998887765
No 70
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.98 E-value=2.9e-31 Score=254.85 Aligned_cols=202 Identities=29% Similarity=0.510 Sum_probs=176.4
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEE
Q 007106 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (618)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~l 177 (618)
...|+++++++++.+.|.+.++..|+++|+++++.+++++++++++|||+|||++|++|++..+.. .....++|
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~------~~~~~~~l 86 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP------VTGQVSVL 86 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC------CTTCCCEE
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc------cCCCEEEE
Confidence 346889999999999999999999999999999999999999999999999999999999877532 12245899
Q ss_pred EEcCcHHHHHHHHHHHHHhCC---CCcEEEEEcCcchhhhhHHhhc-CCCEEEEChHHHHHHHHhcCCCCCCccEEEEch
Q 007106 178 VLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (618)
Q Consensus 178 il~Pt~~La~q~~~~l~~~~~---~~~~~~~~g~~~~~~~~~~l~~-~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDE 253 (618)
|++||++|+.||+++++++.. .+++..++++.....+...+.. .++|+|+||++|.+.+....+.+.++++||+||
T Consensus 87 il~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 166 (220)
T 1t6n_A 87 VMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 166 (220)
T ss_dssp EECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEES
T ss_pred EEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcC
Confidence 999999999999999988763 5778888888776666665554 479999999999999988888899999999999
Q ss_pred hhhhcc-CCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCCceEe
Q 007106 254 ADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVD 305 (618)
Q Consensus 254 aH~~~~-~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~ 305 (618)
||++.+ .++...+..++..+++++|+++||||+++.+.++...++.+|..+.
T Consensus 167 ah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 167 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred HHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 999987 3677888889999988999999999999999999999999887664
No 71
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.5e-30 Score=252.64 Aligned_cols=209 Identities=27% Similarity=0.441 Sum_probs=171.6
Q ss_pred CCCCCCCccCC----CCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcC
Q 007106 94 SKDEGLDISKL----DISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169 (618)
Q Consensus 94 ~~~~~~~~~~~----~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~ 169 (618)
.+.+..+|+++ ++++++++.|.+.++..|+++|+++++.+++++++++++|||+|||++|++|++..+.. .
T Consensus 20 ~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~-----~ 94 (245)
T 3dkp_A 20 LPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ-----P 94 (245)
T ss_dssp CCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCS-----C
T ss_pred CCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhh-----c
Confidence 34455677776 89999999999999999999999999999999999999999999999999999988742 1
Q ss_pred CCCCCeEEEEcCcHHHHHHHHHHHHHhCCC--CcEEEEEcCcchhhh-hHHhhcCCCEEEEChHHHHHHHHhc--CCCCC
Q 007106 170 RGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ-MRALDYGVDAVVGTPGRVIDLIKRN--ALNLS 244 (618)
Q Consensus 170 ~~~~~~~lil~Pt~~La~q~~~~l~~~~~~--~~~~~~~g~~~~~~~-~~~l~~~~~Ilv~T~~~l~~~l~~~--~~~l~ 244 (618)
...++++||++||++|+.|+++++++++.. +.+..++++...... .......++|+|+||++|.+.+... .+.+.
T Consensus 95 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 95 ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 224678999999999999999999998764 344444443322222 1223456899999999999999876 46788
Q ss_pred CccEEEEchhhhhcc---CCcHHHHHHHHHhCC-CCCcEEEEEecCChHHHHHHHHhccCCceEeec
Q 007106 245 EVQFVVLDEADQMLS---VGFAEDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307 (618)
Q Consensus 245 ~~~~vViDEaH~~~~---~~~~~~~~~il~~l~-~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~ 307 (618)
++++||+||||++.+ .+|...+..++..+. ++.|+++||||+++.+..+...++.+|..+.+.
T Consensus 175 ~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~ 241 (245)
T 3dkp_A 175 SVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIG 241 (245)
T ss_dssp TCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEEC
T ss_pred cCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeC
Confidence 999999999999987 468888888887764 578999999999999999999999999888753
No 72
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.97 E-value=3.7e-28 Score=258.30 Aligned_cols=314 Identities=20% Similarity=0.202 Sum_probs=221.9
Q ss_pred CChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC--
Q 007106 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~-- 198 (618)
.+++.|.-..-.+.+++ |..+.||+|||+++.+|++-..+. +..+.||+|+..||.|-++++..++.
T Consensus 75 r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~---------G~~vhVvT~ndyLA~rdae~m~~l~~~L 143 (822)
T 3jux_A 75 RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI---------GKGVHLVTVNDYLARRDALWMGPVYLFL 143 (822)
T ss_dssp CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT---------SSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc---------CCceEEEeccHHHHHhHHHHHHHHHHHh
Confidence 38889988887777765 999999999999999999766544 67899999999999998888877653
Q ss_pred CCcEEEEEcCc------------------------------------------------chhhhhHHhhcCCCEEEEChH
Q 007106 199 SLDTICVYGGT------------------------------------------------PISHQMRALDYGVDAVVGTPG 230 (618)
Q Consensus 199 ~~~~~~~~g~~------------------------------------------------~~~~~~~~l~~~~~Ilv~T~~ 230 (618)
++.+.+++... ......+.....|+|+++|..
T Consensus 144 glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn~ 223 (822)
T 3jux_A 144 GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNN 223 (822)
T ss_dssp TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEHH
T ss_pred CCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEccCc
Confidence 57777777621 001111222234899999999
Q ss_pred HH-HHHHHhcC------CCCCCccEEEEchhhhhccC---------------------------------Cc--------
Q 007106 231 RV-IDLIKRNA------LNLSEVQFVVLDEADQMLSV---------------------------------GF-------- 262 (618)
Q Consensus 231 ~l-~~~l~~~~------~~l~~~~~vViDEaH~~~~~---------------------------------~~-------- 262 (618)
.| .++|..+. ...+.+.+.||||+|.++=. +|
T Consensus 224 EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~ 303 (822)
T 3jux_A 224 EFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKART 303 (822)
T ss_dssp HHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSC
T ss_pred chhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCe
Confidence 98 56665431 22456899999999986310 00
Q ss_pred -------HHHHHH------------------H---HHh---CCC------------------------------------
Q 007106 263 -------AEDVEV------------------I---LER---LPQ------------------------------------ 275 (618)
Q Consensus 263 -------~~~~~~------------------i---l~~---l~~------------------------------------ 275 (618)
...++. + +.. +..
T Consensus 304 v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiE 383 (822)
T 3jux_A 304 IILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIE 383 (822)
T ss_dssp EEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHH
T ss_pred EEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHH
Confidence 000111 0 000 000
Q ss_pred -------------------------CCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEE-EEEeccCcc
Q 007106 276 -------------------------NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL-YSIATSMYE 329 (618)
Q Consensus 276 -------------------------~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~ 329 (618)
-.++.+||+|......++...|- ...+. ++.... ...... ..+..+..+
T Consensus 384 aKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~--l~vv~-IPtnkp--~~R~d~~d~vy~t~~e 458 (822)
T 3jux_A 384 AKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYG--MEVVV-IPTHKP--MIRKDHDDLVFRTQKE 458 (822)
T ss_dssp HHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSC--CCEEE-CCCSSC--CCCEECCCEEESSHHH
T ss_pred HHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhC--CeEEE-ECCCCC--cceeecCcEEEecHHH
Confidence 01568899998877666655543 22222 222211 111111 123345556
Q ss_pred hhHHHHHHHHHh-ccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCC
Q 007106 330 KPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGL 407 (618)
Q Consensus 330 k~~~l~~ll~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gi 407 (618)
|...+...+.+. ..+.++||||++++.++.+++.|.+. +++.++|+++.+.++..+...++.+ .|+|||++++||+
T Consensus 459 K~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGt 536 (822)
T 3jux_A 459 KYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGT 536 (822)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTC
T ss_pred HHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCc
Confidence 767776666553 46789999999999999999999764 9999999996666666566666655 6999999999999
Q ss_pred CCC--------CccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhH
Q 007106 408 DVP--------NVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452 (618)
Q Consensus 408 di~--------~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 452 (618)
||+ +..+||+++.|.+...|+||+||+||.|.+|.+++|++.+|.
T Consensus 537 DI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 537 DIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp CCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred CccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 998 566999999999999999999999999999999999988763
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.97 E-value=2.2e-29 Score=287.10 Aligned_cols=303 Identities=16% Similarity=0.130 Sum_probs=200.3
Q ss_pred CChHHHHHHHHHHhC--------------CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHH
Q 007106 121 KLFPIQKAVLEPAMQ--------------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~--------------~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La 186 (618)
.|+|+|.+|++.++. +++++++++||||||+++ ++++..+.. .....++|||||+++|+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~------~~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE------LDFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT------CTTCCEEEEEECGGGCC
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh------cCCCceEEEEeCcHHHH
Confidence 499999999998865 367999999999999997 555544321 12246899999999999
Q ss_pred HHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh-cCCCEEEEChHHHHHHHHhcC--CCCCCccEEEEchhhhhccCCcH
Q 007106 187 KQVEKEFHESAPSLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNA--LNLSEVQFVVLDEADQMLSVGFA 263 (618)
Q Consensus 187 ~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~Ilv~T~~~l~~~l~~~~--~~l~~~~~vViDEaH~~~~~~~~ 263 (618)
.||.+++.++.+.. +.+..+.......+. ...+|+|+||++|...+.... ..+..+.+||+||||++.. .
T Consensus 344 ~Q~~~~f~~f~~~~----v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~---~ 416 (1038)
T 2w00_A 344 YQTMKEYQRFSPDS----VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF---G 416 (1038)
T ss_dssp HHHHHHHHTTSTTC----SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---H
T ss_pred HHHHHHHHHhcccc----cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---h
Confidence 99999999876531 223333334444443 458999999999998876532 1355778999999999752 3
Q ss_pred HHHHHHHHhCCCCCcEEEEEecCChHHH----HHHHHhccC-----------------CceEeeccCCcc--cccC--C-
Q 007106 264 EDVEVILERLPQNRQSMMFSATMPPWIR----SLTNKYLKN-----------------PLTVDLVGDSDQ--KLAD--G- 317 (618)
Q Consensus 264 ~~~~~il~~l~~~~~~l~lSAT~~~~~~----~~~~~~l~~-----------------~~~i~~~~~~~~--~~~~--~- 317 (618)
..+..++..++ +.++|+|||||..... .....++.+ |..+........ .... .
T Consensus 417 ~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~ 495 (1038)
T 2w00_A 417 EAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDE 495 (1038)
T ss_dssp HHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCH
T ss_pred HHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccH
Confidence 44566667775 5799999999974321 011111111 111111100000 0000 0
Q ss_pred -----eEEEEEeccCcchhHHHHHHHHHhc----------cCCeEEEEecchhHHHHHHHHHHcc-------------CC
Q 007106 318 -----ISLYSIATSMYEKPSIIGQLITEHA----------KGGKCIVFTQTKRDADRLAHAMAKS-------------YN 369 (618)
Q Consensus 318 -----~~~~~~~~~~~~k~~~l~~ll~~~~----------~~~~~lVf~~~~~~~~~l~~~L~~~-------------~~ 369 (618)
+..............++..++.... .+.++||||++++.|..+++.|.+. ++
T Consensus 496 ~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k 575 (1038)
T 2w00_A 496 KKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLR 575 (1038)
T ss_dssp HHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCc
Confidence 0000000000001122233333221 3458999999999999999988542 34
Q ss_pred cc-ccccC----------C----------CH-----------------------------HHHHHHHHHHhcCCccEEEE
Q 007106 370 CE-PLHGD----------I----------SQ-----------------------------SQRERTLSAFRDGRFNILIA 399 (618)
Q Consensus 370 ~~-~lhg~----------~----------~~-----------------------------~~r~~i~~~f~~g~~~vLVa 399 (618)
+. ++|+. + ++ .+|+.++++|++++++|||+
T Consensus 576 ~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIv 655 (1038)
T 2w00_A 576 IATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIV 655 (1038)
T ss_dssp EEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEE
T ss_pred EEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEE
Confidence 43 44532 2 22 24788999999999999999
Q ss_pred ccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCC
Q 007106 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGK 439 (618)
Q Consensus 400 T~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~ 439 (618)
|+++.+|+|+|.+ +|+++|.|.+...|+|++||++|...
T Consensus 656 vd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~ 694 (1038)
T 2w00_A 656 VGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYD 694 (1038)
T ss_dssp SSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCC
T ss_pred cchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCC
Confidence 9999999999999 67889999999999999999999865
No 74
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=1.3e-25 Score=248.17 Aligned_cols=169 Identities=19% Similarity=0.309 Sum_probs=125.6
Q ss_pred CCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHHhccCCeEEEEecch
Q 007106 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTK 354 (618)
Q Consensus 275 ~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~ 354 (618)
...|++++|||+++...... ...+........ .. .....+.........++..+......+.++||||+++
T Consensus 379 ~~~q~i~~SAT~~~~~~~~~------~~~~~~~~r~~~-l~--~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 449 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAHS------GRVVEQIIRPTG-LL--DPLVRVKPTENQILDLMEGIRERAARGERTLVTVLTV 449 (664)
T ss_dssp TCSEEEEEESSCCHHHHHHC------SEEEEECSCTTC-CC--CCEEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred hcCCEEEEecCCCHHHHHhh------hCeeeeeeccCC-CC--CCeEEEecccchHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 35789999999987542220 111111111100 11 1111122222222333344444444678999999999
Q ss_pred hHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCC-----CCChhHHH
Q 007106 355 RDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYEL-----PNTSETFV 428 (618)
Q Consensus 355 ~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~-----p~~~~~~~ 428 (618)
..++.+++.|.+. +.+..+|+++++.+|.++++.|++|+++|||||+++++|+|+|++++||+++. |.+..+|+
T Consensus 450 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~i 529 (664)
T 1c4o_A 450 RMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 529 (664)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHH
T ss_pred HHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHH
Confidence 9999999999764 88899999999999999999999999999999999999999999999999998 88999999
Q ss_pred HhhhccCCCCCcceEEEEecchhHH
Q 007106 429 HRTGRTGRAGKKGSAILIYTDQQAR 453 (618)
Q Consensus 429 Qr~GR~gR~g~~g~~~~~~~~~~~~ 453 (618)
||+||+||. .+|.|++++++.+..
T Consensus 530 Qr~GRagR~-~~G~~i~~~~~~~~~ 553 (664)
T 1c4o_A 530 QTIGRAARN-ARGEVWLYADRVSEA 553 (664)
T ss_dssp HHHGGGTTS-TTCEEEEECSSCCHH
T ss_pred HHHCccCcC-CCCEEEEEEcCCCHH
Confidence 999999999 489999999876543
No 75
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.94 E-value=1.4e-25 Score=247.77 Aligned_cols=169 Identities=20% Similarity=0.349 Sum_probs=126.7
Q ss_pred CCCcEEEEEecCChHHHHHHHHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHHhccCCeEEEEecch
Q 007106 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTK 354 (618)
Q Consensus 275 ~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~ 354 (618)
...|++++|||+++...... ... +........ ... ....+.........++..+......+.++||||+++
T Consensus 385 ~~~q~i~~SAT~~~~~~~~~----~~~--~~~~~r~~~-l~~--p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEHT----DEM--VEQIIRPTG-LLD--PLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp TCSEEEEECSSCCHHHHHHC----SSC--EEECCCTTC-CCC--CEEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred cCCCEEEEecCCChhHHHhh----hCe--eeeeecccC-CCC--CeEEEecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 36789999999987543221 111 111111100 001 112222222223333444444444678999999999
Q ss_pred hHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCC-----CCChhHHH
Q 007106 355 RDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYEL-----PNTSETFV 428 (618)
Q Consensus 355 ~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~-----p~~~~~~~ 428 (618)
..++.+++.|.+. +++..+|+++++.+|.++++.|++|+++|||||+++++|+|+|++++||+++. |.+..+|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 9999999999764 88999999999999999999999999999999999999999999999999998 89999999
Q ss_pred HhhhccCCCCCcceEEEEecchhHH
Q 007106 429 HRTGRTGRAGKKGSAILIYTDQQAR 453 (618)
Q Consensus 429 Qr~GR~gR~g~~g~~~~~~~~~~~~ 453 (618)
||+||+||. .+|.|++++++.+..
T Consensus 536 Qr~GRagR~-~~G~~i~~~~~~~~~ 559 (661)
T 2d7d_A 536 QTIGRAARN-AEGRVIMYADKITKS 559 (661)
T ss_dssp HHHHTTTTS-TTCEEEEECSSCCHH
T ss_pred HHhCcccCC-CCCEEEEEEeCCCHH
Confidence 999999998 789999999876543
No 76
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=4.3e-24 Score=231.32 Aligned_cols=128 Identities=21% Similarity=0.277 Sum_probs=107.4
Q ss_pred cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007106 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
.++ .|+++|..+++.+++++ |.++.||+|||++|.+|++...+. +.+++||+||++||.|+++++..+
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~---------G~qv~VvTPTreLA~Qdae~m~~l 143 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT---------GKGVHVVTVNDYLARRDAEWMGPV 143 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT---------CSCCEEEESSHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh---------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 577 79999999999999987 999999999999999999755433 568999999999999999999887
Q ss_pred CC--CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHH-HHHHHhcC------CCCC---CccEEEEchhhhhc
Q 007106 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLS---EVQFVVLDEADQML 258 (618)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l-~~~l~~~~------~~l~---~~~~vViDEaH~~~ 258 (618)
+. ++++.+++++.+.. .+.....++|+|+||+.| ++++.... +.++ ++.++||||+|+++
T Consensus 144 ~~~lGLsv~~i~Gg~~~~--~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 144 YRGLGLSVGVIQHASTPA--ERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHTTTCCEEECCTTCCHH--HHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHhcCCeEEEEeCCCCHH--HHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 54 57788888887643 334445689999999999 78887653 4577 89999999999986
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.93 E-value=1.1e-24 Score=197.96 Aligned_cols=153 Identities=36% Similarity=0.668 Sum_probs=140.7
Q ss_pred CCeEEEEEeccCcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCCc
Q 007106 316 DGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRF 394 (618)
Q Consensus 316 ~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~ 394 (618)
..+.+..+......|...+..++... +..++||||++++.++.+++.|.+ .+.+..+|++|++.+|..+++.|+++++
T Consensus 8 ~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 86 (163)
T 2hjv_A 8 RNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEY 86 (163)
T ss_dssp CCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred ccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 44677777778888999999988875 456999999999999999999975 4889999999999999999999999999
Q ss_pred cEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCcccC
Q 007106 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469 (618)
Q Consensus 395 ~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 469 (618)
+|||||+++++|+|+|++++||++++|+++.+|+||+||++|.|+++.|++++++.+...++.+++.++..++.+
T Consensus 87 ~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 161 (163)
T 2hjv_A 87 RYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKI 161 (163)
T ss_dssp SEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEEC
T ss_pred eEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998877654
No 78
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.92 E-value=8.8e-25 Score=203.46 Aligned_cols=175 Identities=22% Similarity=0.357 Sum_probs=136.0
Q ss_pred HHhccCCceEeeccCCcccccCCeEEEEEeccCcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHc-cCCcccc
Q 007106 295 NKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPL 373 (618)
Q Consensus 295 ~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~l 373 (618)
..++.+|..+.+... ......+.+.........|...+.+++... ..++||||++++.++.+++.|.+ .+.+..+
T Consensus 9 ~~~~~~p~~i~v~~~--~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~l 84 (191)
T 2p6n_A 9 SGVDLGTENLYFQSM--GAASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVAI 84 (191)
T ss_dssp ---------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred ccccCCCEEEEECCC--CCCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 345667776654322 234456677777777778888888887653 45899999999999999999965 4889999
Q ss_pred ccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecch-hH
Q 007106 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ-QA 452 (618)
Q Consensus 374 hg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~ 452 (618)
|++|++.+|+++++.|++++++|||||+++++|+|+|++++||+||+|+++.+|+||+||++|.|++|.|++|+++. +.
T Consensus 85 hg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~ 164 (191)
T 2p6n_A 85 HGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDE 164 (191)
T ss_dssp CTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCH
T ss_pred eCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876 67
Q ss_pred HHHHHHHHHhCCCcccCCccc
Q 007106 453 RQVKSIERDVGCRFTQLPRIA 473 (618)
Q Consensus 453 ~~~~~l~~~l~~~~~~~~~~~ 473 (618)
..++.+++.+....+++|..+
T Consensus 165 ~~~~~l~~~l~~~~~~~p~~l 185 (191)
T 2p6n_A 165 SVLMDLKALLLEAKQKVPPVL 185 (191)
T ss_dssp HHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHHHccCcCCHHH
Confidence 778888888877677776654
No 79
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.92 E-value=6.1e-25 Score=203.68 Aligned_cols=159 Identities=35% Similarity=0.565 Sum_probs=130.9
Q ss_pred cCCeEEEEEeccCcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCC
Q 007106 315 ADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR 393 (618)
Q Consensus 315 ~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~ 393 (618)
...+.+..+.+....|...+.++++...+..++||||++++.++.+++.|.. .+.+..+|++|++.+|+++++.|++++
T Consensus 17 ~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~ 96 (185)
T 2jgn_A 17 SENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 96 (185)
T ss_dssp CTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTS
T ss_pred CCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCC
Confidence 4567777777788889999999998876678999999999999999999965 488999999999999999999999999
Q ss_pred ccEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCcccCCccc
Q 007106 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIA 473 (618)
Q Consensus 394 ~~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 473 (618)
++|||||+++++|+|+|++++||++|+|+++.+|+||+||++|.|++|.|++++++.+...++.+.+.+....+++|.++
T Consensus 97 ~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l 176 (185)
T 2jgn_A 97 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWL 176 (185)
T ss_dssp SSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHH
T ss_pred CeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988877777777654
No 80
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.92 E-value=1.6e-24 Score=198.54 Aligned_cols=156 Identities=25% Similarity=0.486 Sum_probs=140.2
Q ss_pred CCeEEEEEeccCcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCCc
Q 007106 316 DGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRF 394 (618)
Q Consensus 316 ~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~ 394 (618)
..+.++++......|...+..+++.. +..++||||++++.++.+++.|.+ .+.+..+|++|++.+|+.+++.|++++.
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 34566777777788999999988876 457999999999999999999965 4889999999999999999999999999
Q ss_pred cEEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecch-hHHHHHHHHHHhCCCcccCCcc
Q 007106 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ-QARQVKSIERDVGCRFTQLPRI 472 (618)
Q Consensus 395 ~vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~ 472 (618)
+|||||+++++|+|+|++++||++|+|+++..|+||+||++|.|++|.|++++++. +...++.+++.++..+++++..
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 161 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC--
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChh
Confidence 99999999999999999999999999999999999999999999999999999875 5677899999999988887764
No 81
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.92 E-value=4e-24 Score=196.84 Aligned_cols=155 Identities=32% Similarity=0.534 Sum_probs=135.3
Q ss_pred CCeEEEEEeccCcc-hhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCC
Q 007106 316 DGISLYSIATSMYE-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGR 393 (618)
Q Consensus 316 ~~~~~~~~~~~~~~-k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~ 393 (618)
..+.++++.+.... |...+..+++.. +..++||||++++.++.+++.|.+. +.+..+|++|++.+|+.+++.|++++
T Consensus 6 ~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~ 84 (175)
T 2rb4_A 6 NNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK 84 (175)
T ss_dssp CCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS
T ss_pred CCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 45666666666544 888888887765 4579999999999999999999764 88999999999999999999999999
Q ss_pred ccEEEEccccccCCCCCCccEEEEcCCC------CChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCcc
Q 007106 394 FNILIATDVAARGLDVPNVDLIIHYELP------NTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFT 467 (618)
Q Consensus 394 ~~vLVaT~~~~~Gidi~~~~~VI~~~~p------~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 467 (618)
++|||||+++++|+|+|++++||++++| .+..+|+||+||++|.|++|.|++++++.+...++.+++.++..++
T Consensus 85 ~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 164 (175)
T 2rb4_A 85 EKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIK 164 (175)
T ss_dssp CSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCCE
T ss_pred CeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCccc
Confidence 9999999999999999999999999999 8999999999999999999999999999999999999999998877
Q ss_pred cCCc
Q 007106 468 QLPR 471 (618)
Q Consensus 468 ~~~~ 471 (618)
+++.
T Consensus 165 ~~~~ 168 (175)
T 2rb4_A 165 QLNA 168 (175)
T ss_dssp EECS
T ss_pred ccCC
Confidence 7654
No 82
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.92 E-value=3.1e-24 Score=195.53 Aligned_cols=153 Identities=30% Similarity=0.578 Sum_probs=133.6
Q ss_pred eEEEEEeccCcc-hhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCCcc
Q 007106 318 ISLYSIATSMYE-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFN 395 (618)
Q Consensus 318 ~~~~~~~~~~~~-k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~ 395 (618)
+.++++...... |...+..+++.. +..++||||++++.++.+++.|.+ .+.+..+|++|++.+|+++++.|++++.+
T Consensus 4 i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 4 IKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred cEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 344455555555 888888888876 457999999999999999999975 48899999999999999999999999999
Q ss_pred EEEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCcccCCc
Q 007106 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPR 471 (618)
Q Consensus 396 vLVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 471 (618)
|||||+++++|+|+|++++||++++|+++.+|+||+||++|.|++|.|++++++.+...+..+++.++..+++++.
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPS 158 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCS
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988887764
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.91 E-value=1.3e-23 Score=199.38 Aligned_cols=150 Identities=41% Similarity=0.783 Sum_probs=135.2
Q ss_pred EEEEeccCcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCCccEEE
Q 007106 320 LYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398 (618)
Q Consensus 320 ~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLV 398 (618)
...+......|...+..++... ..+++||||++++.++.+++.|.+ .+.+..+||+|++.+|+.+++.|++|+++|||
T Consensus 8 ~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlv 86 (212)
T 3eaq_A 8 EEAVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLV 86 (212)
T ss_dssp CEEEECCTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEE
T ss_pred eeEEeCCHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEE
Confidence 3445566778899999988765 467999999999999999999965 48899999999999999999999999999999
Q ss_pred EccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCcccCC
Q 007106 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLP 470 (618)
Q Consensus 399 aT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 470 (618)
||+++++|||+|++++||++++|+++..|+||+||+||.|++|.|++++++.+...++.+++.++..++.++
T Consensus 87 aT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~ 158 (212)
T 3eaq_A 87 ATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVN 158 (212)
T ss_dssp ECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECC
T ss_pred ecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecC
Confidence 999999999999999999999999999999999999999999999999999999999999999988776654
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.90 E-value=4.2e-23 Score=205.04 Aligned_cols=152 Identities=39% Similarity=0.768 Sum_probs=134.6
Q ss_pred eEEEEEeccCcchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCCccE
Q 007106 318 ISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNI 396 (618)
Q Consensus 318 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~v 396 (618)
+.++.+.+....|...+..+++... ..++||||++++.++.+++.|.+ .+.+..+|++|++.+|+.+++.|++|+.+|
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 4566677788889999999988765 67999999999999999999965 488999999999999999999999999999
Q ss_pred EEEccccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCcccCC
Q 007106 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLP 470 (618)
Q Consensus 397 LVaT~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 470 (618)
||||+++++|||+|++++||+++.|++...|+||+||+||.|++|.|++|+++.+...++.+++.++..++.++
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~ 155 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVN 155 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECC
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999988887766543
No 85
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.89 E-value=3.3e-23 Score=197.87 Aligned_cols=166 Identities=20% Similarity=0.221 Sum_probs=120.2
Q ss_pred cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHH-HHHHHHH
Q 007106 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ-VEKEFHE 195 (618)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q-~~~~l~~ 195 (618)
.....|+++|.++++.+++++++++.+|||+|||++++++++..+...... ....++||+||+++|+.| |.+.+.+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~---~~~~~~lil~p~~~L~~q~~~~~~~~ 105 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA---SEPGKVIVLVNKVLLVEQLFRKEFQP 105 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT---TCCCCEEEEESSHHHHHHHHHHTHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc---cCCCcEEEEECHHHHHHHHHHHHHHH
Confidence 345679999999999999999999999999999999999988776553321 235689999999999999 7788887
Q ss_pred hCC-CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcC------CCCCCccEEEEchhhhhccCCcHHHHH-
Q 007106 196 SAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA------LNLSEVQFVVLDEADQMLSVGFAEDVE- 267 (618)
Q Consensus 196 ~~~-~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~------~~l~~~~~vViDEaH~~~~~~~~~~~~- 267 (618)
+.. .+.+..++++.........+...++|+|+||++|...+.... ..+.++++|||||||++.+..+...+.
T Consensus 106 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~ 185 (216)
T 3b6e_A 106 FLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMR 185 (216)
T ss_dssp HHTTTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHH
T ss_pred HhccCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHH
Confidence 654 467777777666555544555568999999999998887643 457789999999999997765544442
Q ss_pred HHHHhC-------------CCCCcEEEEEec
Q 007106 268 VILERL-------------PQNRQSMMFSAT 285 (618)
Q Consensus 268 ~il~~l-------------~~~~~~l~lSAT 285 (618)
.++... .+.+++|+||||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 186 HYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHhcccccccccccCCCCcceEEEeecC
Confidence 222211 157899999998
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.88 E-value=2e-21 Score=210.51 Aligned_cols=124 Identities=22% Similarity=0.204 Sum_probs=87.8
Q ss_pred CChHHHHHHHHH----HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007106 121 KLFPIQKAVLEP----AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 121 ~l~~~Q~~~i~~----i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
+++|+|.+++.. +..++++++++|||+|||++|++|++.. ..+++|++||++|+.|+.+++.++
T Consensus 7 ~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------------~~~~~~~~~t~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------------KKKVLIFTRTHSQLDSIYKNAKLL 74 (540)
T ss_dssp --CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------------TCEEEEEESCHHHHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------------CCcEEEEcCCHHHHHHHHHHHHhc
Confidence 699999998654 4578899999999999999999998653 568999999999999999999875
Q ss_pred CCCCcEEEEEcCcch--------h---------------------------------------hhhHHhhcCCCEEEECh
Q 007106 197 APSLDTICVYGGTPI--------S---------------------------------------HQMRALDYGVDAVVGTP 229 (618)
Q Consensus 197 ~~~~~~~~~~g~~~~--------~---------------------------------------~~~~~l~~~~~Ilv~T~ 229 (618)
.+++..+.+.... . ...+.....++|||+||
T Consensus 75 --~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~ 152 (540)
T 2vl7_A 75 --GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTY 152 (540)
T ss_dssp --TCCEEEC---------------------------------------------------------CTTGGGCSEEEEET
T ss_pred --CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEECh
Confidence 2444433322110 0 00011223579999999
Q ss_pred HHHHHHHHhcCC-------CCCCccEEEEchhhhhc
Q 007106 230 GRVIDLIKRNAL-------NLSEVQFVVLDEADQML 258 (618)
Q Consensus 230 ~~l~~~l~~~~~-------~l~~~~~vViDEaH~~~ 258 (618)
..|++......+ .+.+..+|||||||++.
T Consensus 153 ~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 153 PYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp HHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred HHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 999875543322 24567899999999983
No 87
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.79 E-value=7e-24 Score=194.15 Aligned_cols=140 Identities=30% Similarity=0.589 Sum_probs=127.4
Q ss_pred cchhHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccC
Q 007106 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406 (618)
Q Consensus 328 ~~k~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~G 406 (618)
..|...+..+++.. ...++||||++++.++.+++.|.+. +.+..+|++|++.+|+.+++.|++++++|||||+++++|
T Consensus 15 ~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 93 (170)
T 2yjt_D 15 EHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARG 93 (170)
Confidence 56777777777664 4579999999999999999999654 889999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEEecchhHHHHHHHHHHhCCCccc
Q 007106 407 LDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQ 468 (618)
Q Consensus 407 idi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 468 (618)
+|+|++++||++++|+++..|+||+||++|.|++|.|++++++.+...+..+++.++..++.
T Consensus 94 id~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (170)
T 2yjt_D 94 IDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKA 155 (170)
Confidence 99999999999999999999999999999999999999999999988888888877766654
No 88
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.7e-21 Score=188.35 Aligned_cols=181 Identities=20% Similarity=0.253 Sum_probs=129.7
Q ss_pred CHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHH
Q 007106 107 SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (618)
Q Consensus 107 ~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La 186 (618)
++.+.+.+.......++++|+++++.+.++++++++++||||||+++.++++..+.... .....++++++|+++|+
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~----~~~~~~~l~~~p~~~la 122 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND----RAAECNIVVTQPRRISA 122 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT----CGGGCEEEEEESSHHHH
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC----CCCceEEEEeccchHHH
Confidence 34455555555566789999999999999999999999999999988888887665421 12245899999999999
Q ss_pred HHHHHHHHHhCC-CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhh-ccCCcH-
Q 007106 187 KQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM-LSVGFA- 263 (618)
Q Consensus 187 ~q~~~~l~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~-~~~~~~- 263 (618)
.|+++.+.+.+. .+...+-+ ............++|+|+||++|++.+.. .+.++++|||||||++ ++.++.
T Consensus 123 ~q~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 123 VSVAERVAFERGEEPGKSCGY---SVRFESILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp HHHHHHHHHTTTCCTTSSEEE---EETTEEECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHH
T ss_pred HHHHHHHHHHhccccCceEEE---eechhhccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHH
Confidence 999999887553 11111111 11111111124478999999999998876 3889999999999985 555555
Q ss_pred HHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhccCC
Q 007106 264 EDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNP 301 (618)
Q Consensus 264 ~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~ 301 (618)
..++.++... ++.|+++||||++... ...++.+.
T Consensus 197 ~~l~~i~~~~-~~~~~il~SAT~~~~~---~~~~~~~~ 230 (235)
T 3llm_A 197 VVLRDVVQAY-PEVRIVLMSATIDTSM---FCEYFFNC 230 (235)
T ss_dssp HHHHHHHHHC-TTSEEEEEECSSCCHH---HHHHTTSC
T ss_pred HHHHHHHhhC-CCCeEEEEecCCCHHH---HHHHcCCC
Confidence 3555555554 5789999999999865 44444443
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.85 E-value=1.7e-21 Score=193.98 Aligned_cols=153 Identities=17% Similarity=0.136 Sum_probs=120.9
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC-
Q 007106 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP- 198 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~- 198 (618)
.+|+++|.++++.++.+.+.|++++||+|||++++.++...+.+ ...++||++||++|++||++++.++..
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~~lil~Pt~~L~~q~~~~l~~~~~~ 183 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRLF 183 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH--------CSSEEEEECSSHHHHHHHHHHHHHHTSC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc--------CCCeEEEEECCHHHHHHHHHHHHHhccc
Confidence 47999999999999988889999999999999998877766543 124899999999999999999999864
Q ss_pred -CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCC
Q 007106 199 -SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277 (618)
Q Consensus 199 -~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~ 277 (618)
...+..++++..... ......+|+|+||+.+.... ...+.++++||+||||++. ...+..++..+.+..
T Consensus 184 ~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~---~~~~~~~~~vIiDEaH~~~----~~~~~~il~~~~~~~ 253 (282)
T 1rif_A 184 SHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP---KEWFSQFGMMMNDECHLAT----GKSISSIISGLNNCM 253 (282)
T ss_dssp CGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC---GGGGGGEEEEEEETGGGCC----HHHHHHHTTTCTTCC
T ss_pred ccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhH---HHHHhhCCEEEEECCccCC----cccHHHHHHHhhcCC
Confidence 235566666554322 22245799999999875432 2236788999999999985 457888888887889
Q ss_pred cEEEEEecCChHH
Q 007106 278 QSMMFSATMPPWI 290 (618)
Q Consensus 278 ~~l~lSAT~~~~~ 290 (618)
++++|||||++..
T Consensus 254 ~~l~lSATp~~~~ 266 (282)
T 1rif_A 254 FKFGLSGSLRDGK 266 (282)
T ss_dssp EEEEECSSCCTTS
T ss_pred eEEEEeCCCCCcc
Confidence 9999999998654
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.84 E-value=7.8e-19 Score=190.91 Aligned_cols=127 Identities=18% Similarity=0.125 Sum_probs=96.8
Q ss_pred CChHHHHHHHHH----HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007106 121 KLFPIQKAVLEP----AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 121 ~l~~~Q~~~i~~----i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
+++|+|.+++.. +..++++++++|||+|||++|++|++.. ..+++|++||++|+.|+.+++..+
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~------------~~~v~i~~pt~~l~~q~~~~~~~l 70 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV------------KPKVLFVVRTHNEFYPIYRDLTKI 70 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH------------CSEEEEEESSGGGHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC------------CCeEEEEcCCHHHHHHHHHHHHHH
Confidence 589999987764 4578899999999999999999999872 578999999999999999999876
Q ss_pred CC--CCcEEEEEcCcch---------------------------------hhhh------------------HHhhcCCC
Q 007106 197 AP--SLDTICVYGGTPI---------------------------------SHQM------------------RALDYGVD 223 (618)
Q Consensus 197 ~~--~~~~~~~~g~~~~---------------------------------~~~~------------------~~l~~~~~ 223 (618)
.. .+++.++.+..+. .... +.....++
T Consensus 71 ~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~ad 150 (551)
T 3crv_A 71 REKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKAD 150 (551)
T ss_dssp CCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCS
T ss_pred hhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCC
Confidence 43 4566665553221 0000 22234689
Q ss_pred EEEEChHHHHHHHHhcCCCC-CCccEEEEchhhhhcc
Q 007106 224 AVVGTPGRVIDLIKRNALNL-SEVQFVVLDEADQMLS 259 (618)
Q Consensus 224 Ilv~T~~~l~~~l~~~~~~l-~~~~~vViDEaH~~~~ 259 (618)
|||+||..|++...+..+.+ ....+|||||||++.+
T Consensus 151 IVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 151 VIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp EEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred EEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99999999988765544433 4678999999998765
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.80 E-value=5.8e-19 Score=170.26 Aligned_cols=139 Identities=17% Similarity=0.069 Sum_probs=109.5
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC
Q 007106 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~ 199 (618)
..|+++|.++++.++++.++++++|||+|||++++.++... +.++||++|+++|+.||.+++.++ +
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------------~~~~liv~P~~~L~~q~~~~~~~~--~ 157 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF--G 157 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------------CSCEEEEESSHHHHHHHHHHHGGG--C
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEeCCHHHHHHHHHHHHhC--C
Confidence 57999999999999998899999999999999987766542 457999999999999999999983 4
Q ss_pred Cc-EEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCc
Q 007106 200 LD-TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278 (618)
Q Consensus 200 ~~-~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~ 278 (618)
+. +..+.+... ...+|+|+|++.+....... ..++++|||||+|++.+..+ ..++..++ ..+
T Consensus 158 ~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~~----~~i~~~~~-~~~ 220 (237)
T 2fz4_A 158 EEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESY----VQIAQMSI-APF 220 (237)
T ss_dssp GGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTTH----HHHHHTCC-CSE
T ss_pred CCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCChHH----HHHHHhcc-CCE
Confidence 66 665555443 24689999999987665531 24689999999999876543 44555554 678
Q ss_pred EEEEEecCChH
Q 007106 279 SMMFSATMPPW 289 (618)
Q Consensus 279 ~l~lSAT~~~~ 289 (618)
+|+|||||++.
T Consensus 221 ~l~LSATp~r~ 231 (237)
T 2fz4_A 221 RLGLTATFERE 231 (237)
T ss_dssp EEEEEESCC--
T ss_pred EEEEecCCCCC
Confidence 99999999864
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.74 E-value=1.1e-16 Score=175.24 Aligned_cols=104 Identities=20% Similarity=0.285 Sum_probs=70.9
Q ss_pred CCeEEEEecchhHHHHHHHHHHccCCccccccCCCHHHHHHHHHHHhcCCccEEEEcc--ccccCCCCCC--ccEEEEcC
Q 007106 344 GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD--VAARGLDVPN--VDLIIHYE 419 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~--~~~~Gidi~~--~~~VI~~~ 419 (618)
++.+|||+++....+.+++.|. .+... ..-+++..++..+++.|+ ++..||++|. .+.+|||+++ +..||+..
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~-~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~ 524 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVS-FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAG 524 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCC-SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESS
T ss_pred CCCEEEEeCCHHHHHHHHHHHH-hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEc
Confidence 5689999999999999988875 32222 334455678999999999 8888999974 8999999987 77899988
Q ss_pred CCCC---h--------------------------hHHHHhhhccCCCCCcceEEEEecch
Q 007106 420 LPNT---S--------------------------ETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 420 ~p~~---~--------------------------~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
.|.. + ..+.|.+||+-|.-.+--+++++++.
T Consensus 525 lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 584 (620)
T 4a15_A 525 LPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKR 584 (620)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGG
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEccc
Confidence 8752 1 11259999999986655555555543
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.72 E-value=1.2e-17 Score=163.83 Aligned_cols=121 Identities=20% Similarity=0.297 Sum_probs=94.2
Q ss_pred cCcchhHHHHHHHHHh-ccCCeEEEEecchhHHHHHHHHHHc--cCCccccccCCCHHHHHHHHHHHhcC-Ccc-EEEEc
Q 007106 326 SMYEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAK--SYNCEPLHGDISQSQRERTLSAFRDG-RFN-ILIAT 400 (618)
Q Consensus 326 ~~~~k~~~l~~ll~~~-~~~~~~lVf~~~~~~~~~l~~~L~~--~~~~~~lhg~~~~~~r~~i~~~f~~g-~~~-vLVaT 400 (618)
....|...+.+++.+. ..+.++||||+++..++.+++.|.+ .+.+..+||.+++.+|+++++.|+++ .++ +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 3456778888887765 3578999999999999999999975 58889999999999999999999998 676 78999
Q ss_pred cccccCCCCCCccEEEEcCCCCChhHHHHhhhccCCCCCcceEEEE
Q 007106 401 DVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446 (618)
Q Consensus 401 ~~~~~Gidi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~ 446 (618)
+++++|||++.+++||+||+||++..|.|++||++|.|+++.|.++
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~ 218 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVH 218 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEE
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEE
Confidence 9999999999999999999999999999999999999988776443
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.77 E-value=1.8e-08 Score=110.09 Aligned_cols=145 Identities=20% Similarity=0.237 Sum_probs=87.5
Q ss_pred ChHHHHHHHHHHhCCCCEEEEccCCChhHH--HHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC
Q 007106 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTL--AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~--~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~ 199 (618)
-++.|+.+++.++.++.+++++++|+|||. +++++++..+. ...+.++++++||..+|.++.+.+......
T Consensus 150 ~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~-------~~~~~~vll~APTg~AA~~L~e~~~~~~~~ 222 (608)
T 1w36_D 150 EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA-------DGERCRIRLAAPTGKAAARLTESLGKALRQ 222 (608)
T ss_dssp SCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC-------SSCCCCEEEEBSSHHHHHHHHHHHTHHHHH
T ss_pred CCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhh-------hcCCCeEEEEeCChhHHHHHHHHHHHHHhc
Confidence 378999999999999999999999999994 44444443321 123568999999999999998887653221
Q ss_pred CcE--EEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCC
Q 007106 200 LDT--ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277 (618)
Q Consensus 200 ~~~--~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~ 277 (618)
+.+ ... ...+ .....+ +.++-.+|... . +........++++|||||++++ + ...+..++..++...
T Consensus 223 l~l~~~~~-~~~~--~~~~Ti---h~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAsml-~---~~~~~~Ll~~l~~~~ 290 (608)
T 1w36_D 223 LPLTDEQK-KRIP--EDASTL---HRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEASMI-D---LPMMSRLIDALPDHA 290 (608)
T ss_dssp SSCCSCCC-CSCS--CCCBTT---TSCC-------------CTTSCCSCSEEEECSGGGC-B---HHHHHHHHHTCCTTC
T ss_pred CCCCHHHH-hccc--hhhhhh---HhhhccCCCch-H-HHhccCCCCCCCEEEEechhhC-C---HHHHHHHHHhCCCCC
Confidence 110 000 0000 000000 12222233221 0 1111122337899999999954 3 567788899998889
Q ss_pred cEEEEEec
Q 007106 278 QSMMFSAT 285 (618)
Q Consensus 278 ~~l~lSAT 285 (618)
|+|++.=+
T Consensus 291 ~liLvGD~ 298 (608)
T 1w36_D 291 RVIFLGDR 298 (608)
T ss_dssp EEEEEECT
T ss_pred EEEEEcch
Confidence 98887543
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.59 E-value=7.8e-07 Score=98.33 Aligned_cols=67 Identities=24% Similarity=0.207 Sum_probs=54.1
Q ss_pred CChHHHHHHHHHHhCCCC-EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007106 121 KLFPIQKAVLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~-~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
.|.+.|++|+..++..++ .||+||+|||||.+..-.+...+ + .+.++|+++||..-++++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~-~--------~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAV-K--------QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHH-H--------TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHH-h--------CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 478999999999887654 79999999999987654444433 2 1568999999999999999998764
No 96
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.53 E-value=1.7e-06 Score=91.39 Aligned_cols=135 Identities=16% Similarity=0.178 Sum_probs=80.4
Q ss_pred cCCCCChHHHHHHHHHHhCC-----CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHH
Q 007106 117 RGISKLFPIQKAVLEPAMQG-----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (618)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~-----~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~ 191 (618)
..+..|++-|++++..++.. ..++|.|+.|||||.+. ..++..+... ....+++++||...+..+.+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~-------~~~~il~~a~T~~Aa~~l~~ 92 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST-------GETGIILAAPTHAAKKILSK 92 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT-------TCCCEEEEESSHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc-------CCceEEEecCcHHHHHHHHh
Confidence 45677999999999876532 37999999999999654 4445454431 11369999999888877766
Q ss_pred HHHHhCCCCcEEEEEcCcchhhhhHH-hh-cCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHH
Q 007106 192 EFHESAPSLDTICVYGGTPISHQMRA-LD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269 (618)
Q Consensus 192 ~l~~~~~~~~~~~~~g~~~~~~~~~~-l~-~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~i 269 (618)
.+. ..+..++. .... .. ......+.. .....+..+++|||||+|.+ -...+..+
T Consensus 93 ~~~-----~~~~T~h~------~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~iiiDE~~~~----~~~~~~~l 148 (459)
T 3upu_A 93 LSG-----KEASTIHS------ILKINPVTYEENVLFEQ---------KEVPDLAKCRVLICDEVSMY----DRKLFKIL 148 (459)
T ss_dssp HHS-----SCEEEHHH------HHTEEEEECSSCEEEEE---------CSCCCCSSCSEEEESCGGGC----CHHHHHHH
T ss_pred hhc-----cchhhHHH------HhccCcccccccchhcc---------cccccccCCCEEEEECchhC----CHHHHHHH
Confidence 552 11111110 0000 00 000001110 11233567899999999975 24566677
Q ss_pred HHhCCCCCcEEEEE
Q 007106 270 LERLPQNRQSMMFS 283 (618)
Q Consensus 270 l~~l~~~~~~l~lS 283 (618)
+..++...+++++.
T Consensus 149 ~~~~~~~~~~~~vG 162 (459)
T 3upu_A 149 LSTIPPWCTIIGIG 162 (459)
T ss_dssp HHHSCTTCEEEEEE
T ss_pred HHhccCCCEEEEEC
Confidence 77776566666654
No 97
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.35 E-value=1.4e-06 Score=94.24 Aligned_cols=122 Identities=19% Similarity=0.209 Sum_probs=81.8
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC
Q 007106 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~ 199 (618)
..+++.|++++..++....++|.+++|+|||.+. ..++..+.. .+.++++++||...+..+.+.+.
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~--------~g~~Vl~~ApT~~Aa~~L~e~~~----- 253 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES--------LGLEVGLCAPTGKAARRLGEVTG----- 253 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHHT-----
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh--------cCCeEEEecCcHHHHHHhHhhhc-----
Confidence 4589999999999999888999999999999753 334433322 25689999999988887766542
Q ss_pred CcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHH----HHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCC
Q 007106 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDL----IKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275 (618)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~----l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~ 275 (618)
... .|..+++.. +.........+++|||||++++ -...+..++..++.
T Consensus 254 ~~a------------------------~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml----~~~~~~~Ll~~~~~ 305 (574)
T 3e1s_A 254 RTA------------------------STVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMM----GDALMLSLLAAVPP 305 (574)
T ss_dssp SCE------------------------EEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGC----CHHHHHHHHTTSCT
T ss_pred ccH------------------------HHHHHHHcCCcchhhhhhcccccCCEEEEcCccCC----CHHHHHHHHHhCcC
Confidence 111 111111100 0011122346789999999976 34567777888877
Q ss_pred CCcEEEEE
Q 007106 276 NRQSMMFS 283 (618)
Q Consensus 276 ~~~~l~lS 283 (618)
..++|++.
T Consensus 306 ~~~lilvG 313 (574)
T 3e1s_A 306 GARVLLVG 313 (574)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEe
Confidence 77777653
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.22 E-value=1.2e-05 Score=88.16 Aligned_cols=70 Identities=23% Similarity=0.291 Sum_probs=55.5
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007106 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
...+++.|++|+..++....++|++|+|+|||.+.. .++..+.+ ..+.++|+++||...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~-~~i~~l~~-------~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLAR-------QGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHH-HHHHHHHT-------SSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHH-HHHHHHHH-------cCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 346899999999999887778999999999998653 33334332 12568999999999999999998764
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.20 E-value=1.8e-05 Score=88.81 Aligned_cols=69 Identities=20% Similarity=0.256 Sum_probs=55.2
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007106 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
..|++.|++|+..++...-++|+||+|+|||.+... ++..+.+. .+.++|+++||...+.++.+.+.+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~-~i~~l~~~-------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLSKI-------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHH-HHHHHHHH-------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH-HHHHHHhC-------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 458899999999998877789999999999986543 33333321 1467999999999999999998875
No 100
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.10 E-value=0.00011 Score=81.37 Aligned_cols=71 Identities=15% Similarity=0.085 Sum_probs=53.7
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC
Q 007106 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
..|++-|++++.. ....++|.|+.|||||.+.+.-+...+.+.. ....++|++++|+..+.++.+.+.+..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-----~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-----CSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSC-----CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCC-----CChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4689999999973 3567999999999999876554544432210 113479999999999999999998764
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.06 E-value=3e-05 Score=86.95 Aligned_cols=69 Identities=23% Similarity=0.274 Sum_probs=55.1
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007106 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
..+++.|++|+..++.....+|++|+|+|||.+.. .++..+.+. .+.++++++||...+.++.+.+.+.
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~-------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ-------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT-------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc-------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 45899999999999887778999999999998653 344444321 2568999999999999999988764
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.83 E-value=0.00011 Score=71.89 Aligned_cols=119 Identities=12% Similarity=0.087 Sum_probs=83.7
Q ss_pred CcchhHHHHHHHHHhc-cCCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccccc
Q 007106 327 MYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404 (618)
Q Consensus 327 ~~~k~~~l~~ll~~~~-~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~ 404 (618)
...|..++..++.... .++++|||++..+..+.+.+++.. .+.+.-+.|.....+++ -.+..+.|.+.|....
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCCC
Confidence 4568888888887764 477999999999999999999964 47778888875443221 1245566666676666
Q ss_pred cCCC-----CCCccEEEEcCCCCChhHH-HHhhhccCCC--C--CcceEEEEecch
Q 007106 405 RGLD-----VPNVDLIIHYELPNTSETF-VHRTGRTGRA--G--KKGSAILIYTDQ 450 (618)
Q Consensus 405 ~Gid-----i~~~~~VI~~~~p~~~~~~-~Qr~GR~gR~--g--~~g~~~~~~~~~ 450 (618)
-|+| +..++.||.||..|++..- +|.+-|++|. | ++-.++.+++..
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~ 237 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAIN 237 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETT
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCC
Confidence 6675 6789999999999999875 9999999997 3 344566666543
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.57 E-value=0.00021 Score=72.62 Aligned_cols=70 Identities=16% Similarity=0.139 Sum_probs=53.9
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007106 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
..|+|+|+..+..+...+-+++..+-+.|||.++...++..+.. ..+..+++++|++..|..+.+.++.+
T Consensus 162 ~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-------~~g~~v~~vA~t~~qA~~vf~~i~~m 231 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQA 231 (385)
T ss_dssp CCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-------SSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-------CCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 46899999999877544568999999999998765555543322 23568999999999999888777654
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.28 E-value=0.001 Score=72.37 Aligned_cols=145 Identities=14% Similarity=0.149 Sum_probs=85.1
Q ss_pred CChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCC
Q 007106 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~ 200 (618)
.|+|+|+..+..+...+.+++..+-++|||.+....++..+.. ..+..+++++|+...|..+.+.++.++...
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~-------~~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT-------SSSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh-------CCCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 5899999999887555668999999999998765544444432 124589999999999999998887764322
Q ss_pred ----cEEEEEcCcchhhhhHHhhcCCCEEEE--ChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCC
Q 007106 201 ----DTICVYGGTPISHQMRALDYGVDAVVG--TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274 (618)
Q Consensus 201 ----~~~~~~g~~~~~~~~~~l~~~~~Ilv~--T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~ 274 (618)
........ ...+ .+.++..|.+. +|..+.- .+.+++|+||+|.+.+ ....+..+...+.
T Consensus 236 p~~~~~~~~~~~---~~~i-~~~nGs~i~~~s~~~~~lrG---------~~~~~~iiDE~~~~~~--~~~l~~~~~~~l~ 300 (592)
T 3cpe_A 236 PDFLQPGIVEWN---KGSI-ELDNGSSIGAYASSPDAVRG---------NSFAMIYIEDCAFIPN--FHDSWLAIQPVIS 300 (592)
T ss_dssp CTTTSCCEEEEC---SSEE-EETTSCEEEEEECCHHHHHH---------SCCSEEEEETGGGCTT--HHHHHHHHHHHHS
T ss_pred hHhhccccccCC---ccEE-EecCCCEEEEEeCCCCCccC---------CCcceEEEehhccCCc--hhHHHHHHHHHhc
Confidence 11111000 0011 12234444433 2333321 1467899999998644 1233344443343
Q ss_pred --CCCcEEEEEecCCh
Q 007106 275 --QNRQSMMFSATMPP 288 (618)
Q Consensus 275 --~~~~~l~lSAT~~~ 288 (618)
.+.++++ ..|+..
T Consensus 301 ~~~~~~ii~-isTP~~ 315 (592)
T 3cpe_A 301 SGRRSKIII-TTTPNG 315 (592)
T ss_dssp SSSCCEEEE-EECCCT
T ss_pred cCCCceEEE-EeCCCC
Confidence 2344444 445543
No 105
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.18 E-value=0.0012 Score=67.96 Aligned_cols=106 Identities=16% Similarity=0.151 Sum_probs=64.3
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHh
Q 007106 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218 (618)
Q Consensus 139 ~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l 218 (618)
.++.++.|+|||.... .+.+ ....+|++||++++..|.+.+.+... .
T Consensus 164 ~~I~G~aGsGKTt~I~-----~~~~---------~~~~lVlTpT~~aa~~l~~kl~~~~~----------~--------- 210 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEIL-----SRVN---------FEEDLILVPGRQAAEMIRRRANASGI----------I--------- 210 (446)
T ss_dssp EEEEECTTSCHHHHHH-----HHCC---------TTTCEEEESCHHHHHHHHHHHTTTSC----------C---------
T ss_pred EEEEcCCCCCHHHHHH-----HHhc---------cCCeEEEeCCHHHHHHHHHHhhhcCc----------c---------
Confidence 6899999999997432 1111 12469999999999999888854210 0
Q ss_pred hcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEec
Q 007106 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (618)
Q Consensus 219 ~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT 285 (618)
.....-|.|.+.++. ..........++|||||+-.+ -...+..++..++. .++|++.=+
T Consensus 211 -~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~----~~~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 -VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLML----HTGCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp -CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGS----CHHHHHHHHHHTTC-SEEEEEECT
T ss_pred -ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccC----CHHHHHHHHHhCCC-CEEEEecCc
Confidence 001223678776542 111222235899999999954 23445555555544 555555433
No 106
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.06 E-value=0.0022 Score=57.88 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=15.5
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
++.+++.+|+|+|||..+
T Consensus 38 g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp CCEEEECCSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 567999999999999754
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.97 E-value=0.0024 Score=58.00 Aligned_cols=39 Identities=15% Similarity=0.035 Sum_probs=26.4
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcH
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~ 183 (618)
++-.++.+++|+|||..++-.+...... +.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~---------g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLG---------KKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT---------TCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEeecc
Confidence 4457899999999998654443333222 56789998873
No 108
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.94 E-value=0.00049 Score=64.38 Aligned_cols=89 Identities=16% Similarity=0.111 Sum_probs=50.2
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhH
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~ 216 (618)
.-+++.+++|+|||..++-.+...... +.+++++.|...- . ........+ + ..
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~---------g~kVli~~~~~d~--r---~~~~i~srl------G-~~------ 65 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYA---------DVKYLVFKPKIDT--R---SIRNIQSRT------G-TS------ 65 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHT---------TCCEEEEEECCCG--G---GCSSCCCCC------C-CS------
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhc---------CCEEEEEEeccCc--h---HHHHHHHhc------C-CC------
Confidence 347889999999998665544443322 5678888875321 0 000111111 0 00
Q ss_pred HhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhh
Q 007106 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (618)
Q Consensus 217 ~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~ 257 (618)
-..+.+.+...+...+.... .-.++++|||||++.+
T Consensus 66 ----~~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 66 ----LPSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFF 101 (223)
T ss_dssp ----SCCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGS
T ss_pred ----ccccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccC
Confidence 01233556666766665432 2345899999999964
No 109
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.85 E-value=0.002 Score=58.78 Aligned_cols=38 Identities=16% Similarity=-0.018 Sum_probs=26.6
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcH
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~ 183 (618)
+-.++.+++|+|||..++-.+..... .+.+++++.|..
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~---------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKI---------AKQKIQVFKPEI 46 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH---------TTCCEEEEEEC-
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHH---------CCCEEEEEEecc
Confidence 34788999999999766544443332 267899999873
No 110
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.81 E-value=0.0022 Score=59.03 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=26.6
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHH
Q 007106 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (618)
Q Consensus 139 ~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~ 184 (618)
.++.+++|+|||..++-.+...... +.+++++.|.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~---------g~kVli~k~~~d 67 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFA---------KQHAIVFKPCID 67 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHT---------TCCEEEEECC--
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC---------CCEEEEEEeccC
Confidence 5789999999998765555544332 678999999753
No 111
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.56 E-value=0.0051 Score=66.50 Aligned_cols=113 Identities=20% Similarity=0.226 Sum_probs=75.4
Q ss_pred CChHHHHHHHHHHhCC--CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC
Q 007106 121 KLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~--~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~ 198 (618)
.+|.-|.+++..+..- ...+|.|+-|.|||.+.-+.+. .+ ...++|++|+.+-+..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a-~~-----------~~~~~vtAP~~~a~~~l~~~~~~--- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLIS-RI-----------AGRAIVTAPAKASTDVLAQFAGE--- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHH-HS-----------SSCEEEECSSCCSCHHHHHHHGG---
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHH-HH-----------HhCcEEECCCHHHHHHHHHHhhC---
Confidence 5789999999988763 3479999999999965443333 22 12469999997766544433321
Q ss_pred CCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCc
Q 007106 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278 (618)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~ 278 (618)
.|-+..|+.+.. ...+.++||||||=.+ -.+.++.++.. ..
T Consensus 240 ------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaI----p~pll~~ll~~----~~ 280 (671)
T 2zpa_A 240 ------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAI----PAPLLHQLVSR----FP 280 (671)
T ss_dssp ------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGS----CHHHHHHHHTT----SS
T ss_pred ------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcC----CHHHHHHHHhh----CC
Confidence 133446665431 1446899999999976 45666666653 34
Q ss_pred EEEEEecCC
Q 007106 279 SMMFSATMP 287 (618)
Q Consensus 279 ~l~lSAT~~ 287 (618)
.++||.|..
T Consensus 281 ~v~~~tTv~ 289 (671)
T 2zpa_A 281 RTLLTTTVQ 289 (671)
T ss_dssp EEEEEEEBS
T ss_pred eEEEEecCC
Confidence 688888875
No 112
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.50 E-value=0.0065 Score=67.78 Aligned_cols=110 Identities=17% Similarity=0.167 Sum_probs=72.6
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC
Q 007106 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~ 199 (618)
..|++-|++++... ...++|.|..|||||.+...-+...+.... -...++|+|+.|+..|.++.+++.+..+.
T Consensus 10 ~~Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-----~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~ 82 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-----VAPWNILAITFTNKAAREMRERVQSLLGG 82 (724)
T ss_dssp TTSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTC-----CCGGGEEEEESSHHHHHHHHHHHHHHHGG
T ss_pred hhCCHHHHHHHhCC--CCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHhcc
Confidence 46899999999763 467999999999999876555544443211 11347999999999999999998876321
Q ss_pred CcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHH-HHHhcCCCC-CCccEEEEchhhh
Q 007106 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVID-LIKRNALNL-SEVQFVVLDEADQ 256 (618)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~-~l~~~~~~l-~~~~~vViDEaH~ 256 (618)
. ...+-|+|...+.. .+......+ -.-.+.|+|+.+.
T Consensus 83 ~--------------------~~~~~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d~ 121 (724)
T 1pjr_A 83 A--------------------AEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQ 121 (724)
T ss_dssp G--------------------GTTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHHH
T ss_pred c--------------------ccCcEEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHHH
Confidence 0 01457888888754 343322111 1223577887663
No 113
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.0088 Score=59.02 Aligned_cols=25 Identities=12% Similarity=0.108 Sum_probs=18.3
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHH
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKII 162 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~ 162 (618)
.+++|.+|+|+|||.++ -.++..+.
T Consensus 46 ~~lli~GpPGTGKT~~v-~~v~~~L~ 70 (318)
T 3te6_A 46 KLFYITNADDSTKFQLV-NDVMDELI 70 (318)
T ss_dssp CEEEEECCCSHHHHHHH-HHHHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 56999999999999754 34444443
No 114
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.37 E-value=0.019 Score=57.13 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=15.2
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
...+++.+|+|+|||..+
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 357999999999999754
No 115
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.29 E-value=0.008 Score=55.85 Aligned_cols=38 Identities=13% Similarity=0.010 Sum_probs=27.7
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcH
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~ 183 (618)
+-.++.+++|+|||..++-.+.... ..+.+++++.|.+
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~---------~~g~kvli~kp~~ 57 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQ---------IAQYKCLVIKYAK 57 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH---------TTTCCEEEEEETT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH---------HCCCeEEEEeecC
Confidence 3478899999999977655555443 2367899998864
No 116
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.26 E-value=0.017 Score=56.26 Aligned_cols=55 Identities=15% Similarity=0.120 Sum_probs=32.4
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHH--HhCCCCEEEEccCCChhHHHH
Q 007106 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEP--AMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~--i~~~~~~ll~~~tGsGKT~~~ 153 (618)
+...|+++.-.++.++.|...-...+ ...+.+.. +.....+++.+|+|+|||..+
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPL--KHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHH--HCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHh--hCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 44567777777777777754321100 01122222 234467999999999999754
No 117
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.25 E-value=0.035 Score=51.27 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=25.2
Q ss_pred CCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEe
Q 007106 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSA 284 (618)
....+|||||+|.+... ....+..++...+.+..+|++|.
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 45679999999987432 33445556666555555555543
No 118
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.09 E-value=0.0033 Score=56.92 Aligned_cols=37 Identities=16% Similarity=0.064 Sum_probs=25.7
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt 182 (618)
+=.++.+++|+|||.-.+-.+-....+ +.+++++.|.
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~---------~~kvl~~kp~ 57 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIA---------QYKCLVIKYA 57 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHT---------TCCEEEEEET
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHc---------CCeEEEEccc
Confidence 347889999999996554444443322 5678888885
No 119
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.08 E-value=0.012 Score=53.93 Aligned_cols=39 Identities=13% Similarity=0.013 Sum_probs=25.7
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHH
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~ 184 (618)
.-.++.+++++|||...+-.+..... .+.+++|+.|...
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~~---------~g~kvli~kp~~D 67 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGIY---------AKQKVVVFKPAID 67 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHH---------TTCCEEEEEEC--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH---------cCCceEEEEeccC
Confidence 34688999999999755444433322 2567999999643
No 120
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.01 E-value=0.023 Score=51.42 Aligned_cols=140 Identities=18% Similarity=0.069 Sum_probs=73.3
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHH-HHHHHHHHHHHhCCCCcEEEEEcCcchhhhh
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE-LAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~-La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~ 215 (618)
..+++...+|.|||.+++-.++..+-. +.+++|+.-.+. ...--.+.+..+ . +... ..+.......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~---------G~rV~~vQF~Kg~~~~gE~~~l~~L-~-v~~~--~~g~gf~~~~ 95 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH---------GKNVGVVQFIKGTWPNGERNLLEPH-G-VEFQ--VMATGFTWET 95 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT---------TCCEEEEESSCCSSCCHHHHHHGGG-T-CEEE--ECCTTCCCCG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEEeeCCCCCccHHHHHHhC-C-cEEE--EcccccccCC
Confidence 469999999999999988777777643 778888843221 000001112222 1 2211 1111100000
Q ss_pred HHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCC--cHHHHHHHHHhCCCCCcEEEEEecCChHHHHH
Q 007106 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG--FAEDVEVILERLPQNRQSMMFSATMPPWIRSL 293 (618)
Q Consensus 216 ~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~--~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~ 293 (618)
..... +. ......+..... .+.-..+++||+||+-..+..+ -.+.+..++..-+....+|+++--+|+++.++
T Consensus 96 ~~~~~--~~--~~a~~~l~~a~~-~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~ 170 (196)
T 1g5t_A 96 QNREA--DT--AACMAVWQHGKR-MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDL 170 (196)
T ss_dssp GGHHH--HH--HHHHHHHHHHHH-HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHH
T ss_pred CCcHH--HH--HHHHHHHHHHHH-HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHh
Confidence 00000 00 000111111221 1223679999999997654433 34566677777777777888777777766665
Q ss_pred H
Q 007106 294 T 294 (618)
Q Consensus 294 ~ 294 (618)
+
T Consensus 171 A 171 (196)
T 1g5t_A 171 A 171 (196)
T ss_dssp C
T ss_pred C
Confidence 4
No 121
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.01 E-value=0.054 Score=55.05 Aligned_cols=18 Identities=33% Similarity=0.281 Sum_probs=15.3
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
...+++.+|+|+|||..+
T Consensus 44 ~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCEEECBCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 357999999999999754
No 122
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.97 E-value=0.0021 Score=56.12 Aligned_cols=19 Identities=21% Similarity=0.351 Sum_probs=16.0
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007106 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~ 153 (618)
.+..+++.+|+|+|||..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677999999999999743
No 123
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.95 E-value=0.031 Score=58.15 Aligned_cols=43 Identities=16% Similarity=0.380 Sum_probs=24.4
Q ss_pred CccEEEEchhhhhccC-CcHHHHHHHHHhC-CCCCcEEEEEecCC
Q 007106 245 EVQFVVLDEADQMLSV-GFAEDVEVILERL-PQNRQSMMFSATMP 287 (618)
Q Consensus 245 ~~~~vViDEaH~~~~~-~~~~~~~~il~~l-~~~~~~l~lSAT~~ 287 (618)
..++|||||+|.+... .....+..++..+ ....++|+.|..++
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~ 238 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREP 238 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCG
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCH
Confidence 5678999999988653 1233344444443 33455555444333
No 124
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.91 E-value=0.033 Score=51.02 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=15.0
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
..+++.+|+|+|||..+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 67999999999999754
No 125
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.072 Score=54.01 Aligned_cols=56 Identities=16% Similarity=0.014 Sum_probs=35.3
Q ss_pred CCCCCCccCCCCCHHHHHHHHHcCC---CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007106 95 KDEGLDISKLDISQDIVAALARRGI---SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~~---~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~ 153 (618)
..|...|+++.=-++.++.|+..=. ..|--++.. .+..-+.+|+.+|+|+|||+.+
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~---gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESL---GIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHH---TCCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhC---CCCCCCceEEeCCCCCCHHHHH
Confidence 3467789998877777777765321 111112211 1223467999999999999854
No 126
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.80 E-value=0.012 Score=64.99 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=54.3
Q ss_pred CChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC
Q 007106 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~ 198 (618)
.|++-|++++... ...++|.|..|||||.+.+--+...+.+.. -...++|+|+.|+..|.++.+++.+...
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-----~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHC-----CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 4889999999763 567999999999999876555554443311 1134799999999999999999988654
No 127
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.74 E-value=0.0074 Score=60.47 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=23.2
Q ss_pred ChHHHHHHHHHHh----CCC---CEEEEccCCChhHHHHH
Q 007106 122 LFPIQKAVLEPAM----QGR---DMIGRARTGTGKTLAFG 154 (618)
Q Consensus 122 l~~~Q~~~i~~i~----~~~---~~ll~~~tGsGKT~~~l 154 (618)
+.|+|.+++..+. +++ .+|+.+|.|+|||..+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 3577777765543 332 38999999999997654
No 128
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.58 E-value=0.12 Score=49.82 Aligned_cols=17 Identities=18% Similarity=0.126 Sum_probs=14.8
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
..+++.+|+|+|||..+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46999999999999855
No 129
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.025 Score=58.28 Aligned_cols=57 Identities=18% Similarity=0.167 Sum_probs=35.9
Q ss_pred CCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHH--HhCCCCEEEEccCCChhHHHH
Q 007106 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEP--AMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~--i~~~~~~ll~~~tGsGKT~~~ 153 (618)
..+...|+++.--+++++.|++.-...+.. .+.+.. +..-+.+|+.+|+|+|||+.+
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~--pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLS--PERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHC--HHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcC--HHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 356778999987888888876542211110 112222 223467999999999999754
No 130
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.46 E-value=0.086 Score=54.26 Aligned_cols=55 Identities=11% Similarity=0.273 Sum_probs=37.3
Q ss_pred CCCccEEEEchhhhhc---cCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHh
Q 007106 243 LSEVQFVVLDEADQML---SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY 297 (618)
Q Consensus 243 l~~~~~vViDEaH~~~---~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~ 297 (618)
..++++||||++-++. +..+...+..+...+.+..-+++++|+........+..|
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f 234 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRF 234 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHH
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHH
Confidence 3578999999998643 233456666677777777777888998765554544444
No 131
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.42 E-value=0.051 Score=48.64 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=15.2
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
..++++.+|+|+|||..+
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 356999999999999754
No 132
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.35 E-value=0.065 Score=55.14 Aligned_cols=56 Identities=14% Similarity=0.071 Sum_probs=36.8
Q ss_pred CCCCCCccCCCCCHHHHHHHHHcC---CCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007106 95 KDEGLDISKLDISQDIVAALARRG---ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~---~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~ 153 (618)
..+..+|+++.--++.++.|...- +..+--++..- +..-+.+|+.+|+|+|||+.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g---~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMG---IRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeeEEECcCCCCHHHHH
Confidence 457778999988888888876432 12222222221 122367999999999999754
No 133
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.35 E-value=0.02 Score=53.96 Aligned_cols=19 Identities=11% Similarity=0.045 Sum_probs=15.8
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007106 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~ 153 (618)
....+++.+|+|+|||..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3467999999999999754
No 134
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.31 E-value=0.36 Score=42.96 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.8
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
..+++.+++|+|||..+
T Consensus 44 ~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 56999999999999754
No 135
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.24 E-value=0.038 Score=54.94 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=31.2
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHh-----CCCCEEEEccCCChhHHHH
Q 007106 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAM-----QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~-----~~~~~ll~~~tGsGKT~~~ 153 (618)
+...|+++.-...+++.|...-. .|.. .+.+. ..+.+|+.+|+|+|||..+
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~~---~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHH---CGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHHh---CHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 44567788777777777754321 1111 11111 1246999999999999754
No 136
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.21 E-value=0.071 Score=45.90 Aligned_cols=21 Identities=14% Similarity=0.079 Sum_probs=17.4
Q ss_pred HhCCCCEEEEccCCChhHHHH
Q 007106 133 AMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 133 i~~~~~~ll~~~tGsGKT~~~ 153 (618)
.....++++.+|+|+|||..+
T Consensus 21 a~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHH
Confidence 345678999999999999854
No 137
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.05 E-value=0.094 Score=53.30 Aligned_cols=17 Identities=35% Similarity=0.237 Sum_probs=14.7
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
..++|.+|+|+|||..+
T Consensus 46 ~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 46999999999999754
No 138
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.98 E-value=0.032 Score=66.04 Aligned_cols=124 Identities=19% Similarity=0.161 Sum_probs=75.8
Q ss_pred CChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCC
Q 007106 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~ 200 (618)
++|+-|.++|..- +.+++|.|..|||||.+.+--++..+..... .-...++|++++|+..|.++.+.+.+.+...
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~---~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~ 84 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN---PIDVDRLLVVTFTNASAAEMKHRIAEALEKE 84 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS---CCCGGGEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC---CCCccceEEEeccHHHHHHHHHHHHHHHHHH
Confidence 5899999999765 6789999999999998766555555533110 0123479999999999999998887643100
Q ss_pred -cEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHH-HhcC--CCCCCccEEEEchhh
Q 007106 201 -DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLI-KRNA--LNLSEVQFVVLDEAD 255 (618)
Q Consensus 201 -~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l-~~~~--~~l~~~~~vViDEaH 255 (618)
.. ........+.+..-..+-|.|...+...+ .... ..+ +-.+-|+||..
T Consensus 85 ~~~-----~~~~~~~~~~~~~~~~~~i~T~hsf~~~~l~~~~~~~~~-~~~f~~~d~~~ 137 (1232)
T 3u4q_A 85 LVQ-----RPGSLHIRRQLSLLNRASISTLHSFCLQVLKKYYYLIDL-DPGFRIADQTE 137 (1232)
T ss_dssp HHH-----STTCHHHHHHHHHTTTSEEECHHHHHHHHHHHHGGGTTC-CTTCEECCHHH
T ss_pred hhc-----CcchHHHHHHHhccCCCeEEeHHHHHHHHHHhhHHhcCC-CCCCeeCCHHH
Confidence 00 00001111122222457889998885444 3322 112 22234778765
No 139
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.96 E-value=0.068 Score=52.48 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=30.8
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHH-HHHHH--HhCCCCEEEEccCCChhHHHH
Q 007106 97 EGLDISKLDISQDIVAALARRGISKLFPIQK-AVLEP--AMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~-~~i~~--i~~~~~~ll~~~tGsGKT~~~ 153 (618)
+...|+++.-..++++.|...-. .|... +.+.. +...+.+++.+|+|+|||+.+
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 44567777666766666653210 11100 11111 233467999999999999754
No 140
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.92 E-value=0.072 Score=52.48 Aligned_cols=19 Identities=16% Similarity=0.280 Sum_probs=16.1
Q ss_pred CCCEEEEccCCChhHHHHH
Q 007106 136 GRDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l 154 (618)
..++++.+|+|+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4689999999999997553
No 141
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.87 E-value=0.0087 Score=51.66 Aligned_cols=21 Identities=10% Similarity=-0.004 Sum_probs=17.2
Q ss_pred HhCCCCEEEEccCCChhHHHH
Q 007106 133 AMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 133 i~~~~~~ll~~~tGsGKT~~~ 153 (618)
+....++++.+++|+|||..+
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 445678999999999999743
No 142
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.79 E-value=0.19 Score=51.55 Aligned_cols=56 Identities=11% Similarity=0.048 Sum_probs=34.0
Q ss_pred CCCCCCccCCCCCHHHHHHHHHcC---CCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007106 95 KDEGLDISKLDISQDIVAALARRG---ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~---~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~ 153 (618)
..+...|+++.=-+++++.|...- +..+--++.. -+...+.+|+.+|+|+|||+.+
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~---g~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQI---GIDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHH---CCCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhC---CCCCCceEEEECCCCCCHHHHH
Confidence 356678999877777777765421 1111111111 1223356999999999999754
No 143
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.72 E-value=0.061 Score=53.40 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=24.5
Q ss_pred CCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEE
Q 007106 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
...++|||||+|.+........+..+++..+.+..+|+.|
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3678999999998751113344555555544555555543
No 144
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.66 E-value=0.13 Score=51.98 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=15.2
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
...++|.+++|+|||..+
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457999999999999754
No 145
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.63 E-value=0.18 Score=51.46 Aligned_cols=56 Identities=16% Similarity=0.093 Sum_probs=35.2
Q ss_pred CCCCCCccCCCCCHHHHHHHHHcC---CCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007106 95 KDEGLDISKLDISQDIVAALARRG---ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~---~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~ 153 (618)
..+...|+++.=-+++++.|.+.- +..+--++..- +..-+.+|+.+|+|+|||+.+
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~G---i~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMG---IKPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHT---CCCCSEEEEESSTTTTHHHHH
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCCCceECCCCchHHHHH
Confidence 457788999976677777775431 12222222221 122357999999999999854
No 146
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.62 E-value=0.11 Score=53.09 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=29.7
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCChHHH-HHHHHHH-hCCCCEEEEccCCChhHHHH
Q 007106 96 DEGLDISKLDISQDIVAALARRGISKLFPIQ-KAVLEPA-MQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q-~~~i~~i-~~~~~~ll~~~tGsGKT~~~ 153 (618)
.+...|+++.-...+++.|...-.. +.. .+.+..+ ...+.+||.+|+|+|||..+
T Consensus 109 ~~~~~~~~iiG~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 109 GTAVKFDDIAGQDLAKQALQEIVIL---PSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHH---HHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCCCChHHhCCHHHHHHHHHHHHHH---hccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 3445677776666666655432100 000 0000011 12367999999999999754
No 147
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.55 E-value=0.094 Score=50.06 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=15.2
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
...+++.+|+|+|||..+
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356999999999999754
No 148
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.54 E-value=0.3 Score=48.60 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=15.0
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
.++++.+|+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999754
No 149
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.48 E-value=0.15 Score=52.58 Aligned_cols=55 Identities=15% Similarity=0.067 Sum_probs=33.8
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCC---CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007106 96 DEGLDISKLDISQDIVAALARRGI---SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~---~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~ 153 (618)
.+...|+++.--++.++.|...-. ..+--++..- +..-+.+|+.+|+|+|||+.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 567789998767777776654311 1111111111 222367999999999999854
No 150
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.47 E-value=0.22 Score=49.83 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=25.4
Q ss_pred CCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEe
Q 007106 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSA 284 (618)
....+|||||+|.+... ....+..+++..+....+|+.+.
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeC
Confidence 45679999999987432 23445556666555555555443
No 151
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.43 E-value=0.054 Score=55.15 Aligned_cols=16 Identities=38% Similarity=0.478 Sum_probs=14.2
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
.++|.+|+|+|||..+
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999754
No 152
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.39 E-value=0.1 Score=51.27 Aligned_cols=17 Identities=35% Similarity=0.278 Sum_probs=14.9
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
.++++.+|+|+|||..+
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999755
No 153
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.31 E-value=0.17 Score=56.47 Aligned_cols=97 Identities=18% Similarity=0.209 Sum_probs=74.0
Q ss_pred cCcchhHHH-HHHHHHhccCCeEEEEecchhHHHHHHHHHHc-----cCCccccccCCCHHHHHHHHHHHhcCCccEEEE
Q 007106 326 SMYEKPSII-GQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399 (618)
Q Consensus 326 ~~~~k~~~l-~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVa 399 (618)
...-|.... ..++.....+.+++|.+|++.-+..+++.+.+ .+.+..+||+++..++..+++.+.+|+.+|+|+
T Consensus 398 TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVg 477 (780)
T 1gm5_A 398 VGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIG 477 (780)
T ss_dssp SSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 334444433 23333344577999999999999888887754 367889999999999999999999999999999
Q ss_pred ccc-cccCCCCCCccEEEEcCCCC
Q 007106 400 TDV-AARGLDVPNVDLIIHYELPN 422 (618)
Q Consensus 400 T~~-~~~Gidi~~~~~VI~~~~p~ 422 (618)
|.. +...+++.++.+||.-....
T Consensus 478 T~~ll~~~~~~~~l~lVVIDEaHr 501 (780)
T 1gm5_A 478 THALIQEDVHFKNLGLVIIDEQHR 501 (780)
T ss_dssp CTTHHHHCCCCSCCCEEEEESCCC
T ss_pred CHHHHhhhhhccCCceEEecccch
Confidence 964 45567888898888765554
No 154
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.30 E-value=0.13 Score=50.88 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=24.3
Q ss_pred CCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEE
Q 007106 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
....+|||||+|.+... ....+..++...+....+|+.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45779999999987432 2344555566555555555544
No 155
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.23 E-value=0.058 Score=56.21 Aligned_cols=113 Identities=19% Similarity=0.066 Sum_probs=53.5
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEE-EcCcchhhh
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISHQ 214 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~-~g~~~~~~~ 214 (618)
+.-++|.|++|+|||..++..+...... .+..++++..- .-..|+..++......+....+ .+.....++
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~--------~g~~vl~~slE-~~~~~l~~R~~~~~~~i~~~~l~~g~l~~~~~ 270 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK--------EGVGVGIYSLE-MPAAQLTLRMMCSEARIDMNRVRLGQLTDRDF 270 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT--------TCCCEEEEESS-SCHHHHHHHHHHHHTTCCTTTCCGGGCCHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCeEEEEECC-CCHHHHHHHHHHHHcCCCHHHHhCCCCCHHHH
Confidence 3458999999999997554444433321 13457776542 2233444443221111110000 111111111
Q ss_pred h------HHhhcCCCEEEE-----ChHHHHHHHHhcCCCCCCccEEEEchhhhhcc
Q 007106 215 M------RALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (618)
Q Consensus 215 ~------~~l~~~~~Ilv~-----T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~ 259 (618)
. ..+. ..++.+- |...+...+..-.. -..+++||||..+.+..
T Consensus 271 ~~~~~a~~~l~-~~~l~i~d~~~~s~~~l~~~~~~l~~-~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 271 SRLVDVASRLS-EAPIYIDDTPDLTLMEVRARARRLVS-QNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHHHHHHHHHH-TSCEEEECCTTCBHHHHHHHHHHHHH-HSCCCEEEEECGGGCBC
T ss_pred HHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEcChhhcCC
Confidence 1 1111 2345543 44555443332110 12588999999998764
No 156
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.22 E-value=0.27 Score=48.63 Aligned_cols=51 Identities=22% Similarity=0.228 Sum_probs=30.4
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHh-----CCCCEEEEccCCChhHHHH
Q 007106 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAM-----QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~-----~~~~~ll~~~tGsGKT~~~ 153 (618)
+...|+++.-.+++++.|...-. .|.+ .+.+. ..+.+|+.+|+|+|||..+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 44577787767777776653210 0111 01121 1256999999999999754
No 157
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.10 E-value=0.22 Score=46.79 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=30.7
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007106 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
.+.-+++.+++|+|||..++..+...+ . .+..++++.-. ....++.+.+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~-~--------~~~~v~~~~~e-~~~~~~~~~~~~ 72 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL-K--------MGEPGIYVALE-EHPVQVRQNMAQ 72 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH-H--------TTCCEEEEESS-SCHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-h--------cCCeEEEEEcc-CCHHHHHHHHHH
Confidence 456689999999999976544433332 2 14457776543 334555555543
No 158
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.08 E-value=0.16 Score=53.46 Aligned_cols=43 Identities=19% Similarity=0.360 Sum_probs=28.3
Q ss_pred ccEEEEchhhhhccCC----------cHHHHHHHHHhCCCCCcEEEEEecCCh
Q 007106 246 VQFVVLDEADQMLSVG----------FAEDVEVILERLPQNRQSMMFSATMPP 288 (618)
Q Consensus 246 ~~~vViDEaH~~~~~~----------~~~~~~~il~~l~~~~~~l~lSAT~~~ 288 (618)
..+|+|||+|.+.... ....+..++..+.....++++.||=.+
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 3689999999886531 123455556666666778888887443
No 159
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.03 E-value=0.2 Score=46.60 Aligned_cols=20 Identities=35% Similarity=0.242 Sum_probs=15.9
Q ss_pred CCCCEEEEccCCChhHHHHH
Q 007106 135 QGRDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~l 154 (618)
.+.-+++.+++|+|||..+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 45668999999999997543
No 160
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=93.92 E-value=0.48 Score=42.76 Aligned_cols=71 Identities=18% Similarity=0.367 Sum_probs=54.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCccE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~ 248 (618)
..++||+|+++..+..+++.|.+. ++.+..+++..+..++...+. ....|+|+| +. ....+++.++++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~-~~~Gldi~~v~~ 125 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK--GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DV-ASKGLDFPAIQH 125 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH--TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HH-HHTTCCCCCCSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cc-hhcCCCcccCCE
Confidence 457999999999999999999876 577888898877665544332 358999999 33 334567888998
Q ss_pred EEE
Q 007106 249 VVL 251 (618)
Q Consensus 249 vVi 251 (618)
||.
T Consensus 126 VI~ 128 (191)
T 2p6n_A 126 VIN 128 (191)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 161
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.90 E-value=0.016 Score=57.74 Aligned_cols=49 Identities=22% Similarity=0.135 Sum_probs=29.9
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007106 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l 193 (618)
.+.-++|.|++|+|||..++..+..... .+..++|+..- .-..|+..++
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~---------~g~~Vl~fSlE-ms~~ql~~Rl 93 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN---------DDRGVAVFSLE-MSAEQLALRA 93 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH---------TTCEEEEEESS-SCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cCCeEEEEeCC-CCHHHHHHHH
Confidence 4455899999999999765444443332 15567777642 3334444444
No 162
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.87 E-value=0.095 Score=58.26 Aligned_cols=57 Identities=14% Similarity=0.056 Sum_probs=33.2
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCCh-HHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007106 96 DEGLDISKLDISQDIVAALARRGISKLF-PIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~-~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~ 153 (618)
.+...|+++..-+++.+.|...-...+. |.+-.-+ .+...+.+|+.+|+|+|||+.+
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHHH
Confidence 4566788888788888877654221111 1000000 0112256999999999999744
No 163
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.83 E-value=0.099 Score=54.63 Aligned_cols=39 Identities=21% Similarity=0.064 Sum_probs=24.6
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcC
Q 007106 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~P 181 (618)
.+.-++|.|++|+|||..++..+...... .+..++|+..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~--------~g~~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK--------TNENVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH--------SSCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEEC
Confidence 34558999999999997554444333321 1345777764
No 164
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.53 E-value=0.11 Score=54.03 Aligned_cols=17 Identities=41% Similarity=0.388 Sum_probs=14.7
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
.++|+.+|+|+|||..+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 46999999999999754
No 165
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.50 E-value=0.18 Score=50.74 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=15.0
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
+.+|+.+|+|+|||+.+
T Consensus 85 ~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCEEEECSTTSCHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 56999999999999855
No 166
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.40 E-value=0.29 Score=45.58 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=13.9
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
.+++.+|+|+|||..+
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999754
No 167
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.36 E-value=0.71 Score=46.06 Aligned_cols=43 Identities=16% Similarity=0.342 Sum_probs=28.6
Q ss_pred CCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEEecCC
Q 007106 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~ 287 (618)
.+.+++|+||+|.+ +......+.+++...+.+..+|+.|-.+.
T Consensus 133 ~~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 46789999999984 43345566677777666666666665544
No 168
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=93.35 E-value=0.35 Score=50.55 Aligned_cols=85 Identities=11% Similarity=0.148 Sum_probs=55.0
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCc------
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGT------ 209 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~------ 209 (618)
+....+.+-+||+||+++. .++.. .+..+|||+|+..+|.|++++++.+++.. +..+...
T Consensus 14 ~~~~~l~g~~gs~ka~~~a-~l~~~-----------~~~p~lvv~~~~~~A~~l~~~l~~~~~~~--v~~fp~~e~lpyd 79 (483)
T 3hjh_A 14 GEQRLLGELTGAACATLVA-EIAER-----------HAGPVVLIAPDMQNALRLHDEISQFTDQM--VMNLADWETLPYD 79 (483)
T ss_dssp TCEEEEECCCTTHHHHHHH-HHHHH-----------SSSCEEEEESSHHHHHHHHHHHHHTCSSC--EEECCCCCSCTTC
T ss_pred CCeEEEeCCCchHHHHHHH-HHHHH-----------hCCCEEEEeCCHHHHHHHHHHHHhhCCCc--EEEEeCccccccc
Confidence 4568899999999997432 22211 13458999999999999999999987653 3333221
Q ss_pred --ch-----hhhhHH----hhcCCCEEEEChHHHHH
Q 007106 210 --PI-----SHQMRA----LDYGVDAVVGTPGRVID 234 (618)
Q Consensus 210 --~~-----~~~~~~----l~~~~~Ilv~T~~~l~~ 234 (618)
.. ..+... ......|||+|...++.
T Consensus 80 ~~~p~~~~~~~Rl~~l~~L~~~~~~ivv~sv~al~~ 115 (483)
T 3hjh_A 80 SFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQ 115 (483)
T ss_dssp SSCCCHHHHHHHHHHHHHGGGCCSSEEEEEHHHHHB
T ss_pred ccCCChHHHHHHHHHHHHHHhCCCCEEEEEHHHHhh
Confidence 01 111111 22346799999888864
No 169
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.19 E-value=0.39 Score=49.38 Aligned_cols=54 Identities=11% Similarity=0.179 Sum_probs=32.5
Q ss_pred CccEEEEchhhhhccC-CcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHhc
Q 007106 245 EVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298 (618)
Q Consensus 245 ~~~~vViDEaH~~~~~-~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l 298 (618)
.+++||||.+=++... .....+..+.....++.-++++.||........+..|.
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~ 236 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFK 236 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHH
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHH
Confidence 5788999988654221 12334455555556666678888887655555444443
No 170
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=93.07 E-value=0.34 Score=42.41 Aligned_cols=72 Identities=15% Similarity=0.312 Sum_probs=54.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCccE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~ 248 (618)
..++||.|+++..+..+++.|.+. ++.+..++++.+..++...+. ...+|+|+| + +....+++.++++
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-----~-~~~~Gld~~~~~~ 106 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL--GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-----D-VAARGIDIENISL 106 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----G-GGTTTCCCSCCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-----C-hhhcCCchhcCCE
Confidence 457999999999999999999876 577888898877665544332 347899999 2 3344567888898
Q ss_pred EEEc
Q 007106 249 VVLD 252 (618)
Q Consensus 249 vViD 252 (618)
||.-
T Consensus 107 Vi~~ 110 (163)
T 2hjv_A 107 VINY 110 (163)
T ss_dssp EEES
T ss_pred EEEe
Confidence 8853
No 171
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.89 E-value=0.13 Score=53.46 Aligned_cols=55 Identities=20% Similarity=0.192 Sum_probs=30.8
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCChHHHH-HHHH-HHhCCCCEEEEccCCChhHHHH
Q 007106 96 DEGLDISKLDISQDIVAALARRGISKLFPIQK-AVLE-PAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~-~~i~-~i~~~~~~ll~~~tGsGKT~~~ 153 (618)
.+...|+++.-...+.+.|...-. .|.+. +.+. .....+.+|+.+|+|+|||+.+
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 455667777666666666653211 01100 0000 1122357999999999999754
No 172
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.78 E-value=0.17 Score=49.91 Aligned_cols=51 Identities=14% Similarity=-0.065 Sum_probs=30.8
Q ss_pred hCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007106 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (618)
Q Consensus 134 ~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~ 194 (618)
..+.-++|.|++|+|||..++..+...+.+ +..+++++.- .-..|+..++.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~---------g~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDN---------DDVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTT---------TCEEEEEESS-SCHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---------CCeEEEEECC-CCHHHHHHHHH
Confidence 344569999999999997555444443321 3567777642 33444444444
No 173
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.72 E-value=0.49 Score=47.09 Aligned_cols=39 Identities=23% Similarity=0.450 Sum_probs=25.7
Q ss_pred CCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEE
Q 007106 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
...+++|+||+|.+... ....+..+++..+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 45789999999987432 3445566666666566555544
No 174
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=92.71 E-value=0.74 Score=45.26 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=15.0
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
..+++.+|+|+|||..+
T Consensus 39 ~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCEEECCTTCCCHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 67999999999999754
No 175
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=92.64 E-value=0.71 Score=40.37 Aligned_cols=72 Identities=10% Similarity=0.237 Sum_probs=54.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCccE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~ 248 (618)
..++||.|+++..+..+++.+.+. .+.+..+++..+..++...+. ....|+|+| .+....+++.++++
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T------~~~~~G~d~~~~~~ 101 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST------DLLARGIDVQQVSL 101 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE------GGGTTTCCCCSCSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc------ChhhcCCCcccCCE
Confidence 468999999999999999999875 467888888877665544332 357899999 23344567888888
Q ss_pred EEEc
Q 007106 249 VVLD 252 (618)
Q Consensus 249 vViD 252 (618)
||.-
T Consensus 102 Vi~~ 105 (165)
T 1fuk_A 102 VINY 105 (165)
T ss_dssp EEES
T ss_pred EEEe
Confidence 8853
No 176
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=92.63 E-value=0.45 Score=47.79 Aligned_cols=18 Identities=33% Similarity=0.335 Sum_probs=15.4
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
.+.+|+.+|+|+|||..+
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457999999999999754
No 177
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.59 E-value=0.94 Score=42.87 Aligned_cols=53 Identities=17% Similarity=0.117 Sum_probs=27.8
Q ss_pred CCCccCCCCCHHHHHHHHHcC--CCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007106 98 GLDISKLDISQDIVAALARRG--ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~--~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~ 153 (618)
...|+++.-.+.+++.+...- +..+..++.. .....+.+++.+|+|+|||..+
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKL---GGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHc---CCCCCCeEEEECcCCCCHHHHH
Confidence 446777766666666554210 0000000000 0111346999999999999754
No 178
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.42 E-value=0.25 Score=48.67 Aligned_cols=38 Identities=21% Similarity=0.269 Sum_probs=23.6
Q ss_pred CccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEE
Q 007106 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 245 ~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
...+|||||+|.+... ....+..+++..+....+|+.|
T Consensus 107 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHH-HHHHHHHHHhccCCCceEEEEe
Confidence 3789999999987432 2233445555555555555554
No 179
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=92.40 E-value=0.48 Score=41.96 Aligned_cols=71 Identities=14% Similarity=0.181 Sum_probs=54.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCccE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~ 248 (618)
..++||.|+++..+..+++.|.+. ++.+..+++..+...+...+. ...+|+|+| .+....+++.++++
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT------~~~~~Gid~~~~~~ 105 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD--GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT------NVCARGIDVKQVTI 105 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC------CSCCTTTCCTTEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe------cchhcCCCcccCCE
Confidence 568999999999999999999875 467888898887666544432 358999999 23344567888888
Q ss_pred EEE
Q 007106 249 VVL 251 (618)
Q Consensus 249 vVi 251 (618)
||.
T Consensus 106 Vi~ 108 (175)
T 2rb4_A 106 VVN 108 (175)
T ss_dssp EEE
T ss_pred EEE
Confidence 884
No 180
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.26 E-value=0.75 Score=46.20 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=15.0
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
+.+|+.+|+|+|||..+
T Consensus 71 ~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 57999999999999754
No 181
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.09 E-value=0.27 Score=52.23 Aligned_cols=41 Identities=10% Similarity=0.150 Sum_probs=26.2
Q ss_pred CCccEEEEchhhhhccCC--cHHHHHHHHHhCCCCCcEEEEEecC
Q 007106 244 SEVQFVVLDEADQMLSVG--FAEDVEVILERLPQNRQSMMFSATM 286 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~--~~~~~~~il~~l~~~~~~l~lSAT~ 286 (618)
....+|||||+|.+.... ....+..++.. ....+|+++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 345789999999886532 22444455544 345677777764
No 182
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=92.09 E-value=0.36 Score=49.51 Aligned_cols=79 Identities=14% Similarity=0.241 Sum_probs=64.5
Q ss_pred hccCCeEEEEecchhHHHHHHHHHHc----cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccc-----cccCCCCCC
Q 007106 341 HAKGGKCIVFTQTKRDADRLAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-----AARGLDVPN 411 (618)
Q Consensus 341 ~~~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~-----~~~Gidi~~ 411 (618)
...+.++||.+|++.-+..+++.+.+ .+.+..+||+.+..++...++.+..++.+|+|+|+- +.. ++..+
T Consensus 61 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~~~~~ 139 (414)
T 3oiy_A 61 ARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKR 139 (414)
T ss_dssp HTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-HTTCC
T ss_pred hcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-hcccc
Confidence 34577999999999999999998876 468889999999999989999999999999999963 222 55567
Q ss_pred ccEEEEcCC
Q 007106 412 VDLIIHYEL 420 (618)
Q Consensus 412 ~~~VI~~~~ 420 (618)
+++||.-.+
T Consensus 140 ~~~iViDEa 148 (414)
T 3oiy_A 140 FDFVFVDDV 148 (414)
T ss_dssp CSEEEESCH
T ss_pred ccEEEEeCh
Confidence 888886554
No 183
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.96 E-value=0.11 Score=53.88 Aligned_cols=49 Identities=14% Similarity=-0.044 Sum_probs=30.0
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007106 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l 193 (618)
.+.-++|.|++|+|||..++..+...+.+ +..++|++.- .-..|+..++
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~---------g~~vl~fSlE-ms~~ql~~R~ 244 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN---------DDVVNLHSLE-MGKKENIKRL 244 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT---------TCEEEEECSS-SCTTHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc---------CCEEEEEECC-CCHHHHHHHH
Confidence 34458999999999997665554444322 4567777642 3333444443
No 184
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.91 E-value=0.54 Score=45.68 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=29.9
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHH-HHHHHHH-hCCCCEEEEccCCChhHHHH
Q 007106 97 EGLDISKLDISQDIVAALARRGISKLFPIQ-KAVLEPA-MQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q-~~~i~~i-~~~~~~ll~~~tGsGKT~~~ 153 (618)
+...|+++.-....++.|...-. .+.. .+.+..+ ...+.+++.+|+|+|||..+
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 44567777666677666643210 0000 0000011 12467999999999999754
No 185
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=91.88 E-value=0.22 Score=50.99 Aligned_cols=17 Identities=41% Similarity=0.409 Sum_probs=13.8
Q ss_pred CCEEE--EccCCChhHHHH
Q 007106 137 RDMIG--RARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll--~~~tGsGKT~~~ 153 (618)
..++| .++.|+|||..+
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 35778 899999999754
No 186
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=91.81 E-value=3.6 Score=40.57 Aligned_cols=52 Identities=15% Similarity=0.308 Sum_probs=29.7
Q ss_pred ChHHHHHHHHhcCCCCCCccEEEEchhhhhcc---CCcHHHHHHHHHhCCCCCcEEEEE
Q 007106 228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLS---VGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 228 T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~---~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
+...++..+..... .--+|||||+|.+.. ..+...+..++... .+..+|+.+
T Consensus 123 ~~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~g 177 (357)
T 2fna_A 123 SFANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRIKFIMSG 177 (357)
T ss_dssp CHHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTEEEEEEE
T ss_pred hHHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcC-CCeEEEEEc
Confidence 34556665554211 244799999998764 34556666666554 244444433
No 187
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=91.66 E-value=0.52 Score=43.34 Aligned_cols=71 Identities=17% Similarity=0.237 Sum_probs=55.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCccE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~ 248 (618)
..++||.|+++.-+..+++.+.+. ++.+..++++.+...+...+. ...+|+|+| .+....+++.++++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT------~~~~~Gidi~~v~~ 102 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT------DVAARGLDIPQVDL 102 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH--TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC------TTTTCSSSCCCBSE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec------ChhhcCCCCccCcE
Confidence 458999999999999999999876 577888999887766554433 347899999 33445677888998
Q ss_pred EEE
Q 007106 249 VVL 251 (618)
Q Consensus 249 vVi 251 (618)
||.
T Consensus 103 Vi~ 105 (212)
T 3eaq_A 103 VVH 105 (212)
T ss_dssp EEE
T ss_pred EEE
Confidence 883
No 188
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=91.62 E-value=0.34 Score=47.52 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=14.1
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
++++.+|+|+|||..+
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 5999999999999754
No 189
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=91.59 E-value=0.65 Score=45.42 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=23.6
Q ss_pred CCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEEE
Q 007106 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
....+++||||+|+|... -...+.+.++.-++...+|+.|
T Consensus 80 ~~~~kvviIdead~lt~~-a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQ-AANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHH-HHHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHH-HHHHHHHHHhCCCCCeEEEEEE
Confidence 346889999999987432 2233444455444444444444
No 190
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=91.38 E-value=1.3 Score=47.36 Aligned_cols=75 Identities=13% Similarity=0.134 Sum_probs=58.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCC-CCcEEEEEcCcchhhhhHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcc
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~-~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~ 247 (618)
+.++||+|+++..+..+++.+.+.++ .+.+..++++.+...+...+. ...+||||| .+....+++.+++
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT------~~~~~GiDip~v~ 412 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT------DVGARGMDFPNVH 412 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC------GGGTSSCCCTTCC
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEc------chhhcCCCcccCC
Confidence 56899999999999999999988755 678888898887666544433 358999999 3444567888899
Q ss_pred EEEEch
Q 007106 248 FVVLDE 253 (618)
Q Consensus 248 ~vViDE 253 (618)
+||.-.
T Consensus 413 ~VI~~~ 418 (563)
T 3i5x_A 413 EVLQIG 418 (563)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 988543
No 191
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=91.33 E-value=0.24 Score=43.82 Aligned_cols=121 Identities=10% Similarity=0.087 Sum_probs=72.6
Q ss_pred ChHHHHHHHHHHhCCC--CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC
Q 007106 122 LFPIQKAVLEPAMQGR--DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~--~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~ 199 (618)
-.+-|..++..++... -.+|.+.-|++||...+..++... + ..+..+.+|+|+..-+....+....-.
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a-~-------~~Gr~V~vLAp~~~s~~~l~~~~~l~~-- 104 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMA-R-------EQGREVQIIAADRRSQMNMKQDERLSG-- 104 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHH-H-------HTTCCEEEECSTTHHHHHHSCTTTCSS--
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHH-H-------hcCeEEEEEcCchHHHHHHHhhcCcCc--
Confidence 3467888888886543 478899999999987544443332 2 237789999999666555443332100
Q ss_pred CcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhhhccCCcHHHHHHHHHhC-CCCCc
Q 007106 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQ 278 (618)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~l-~~~~~ 278 (618)
+++ +. ..+......+..=+++|||||-+|. ...+..+++.. ..+.|
T Consensus 105 -----------------------~t~-t~-----~~ll~~~~~~tp~s~lIVD~AekLS----~kE~~~Lld~A~~~naq 151 (189)
T 2l8b_A 105 -----------------------ELI-TG-----RRQLLEGMAFTPGSTVIVDQGEKLS----LKETLTLLDGAARHNVQ 151 (189)
T ss_dssp -----------------------CSS-ST-----TTTTTTSCCCCCCCEEEEEESSSHH----HHHHHHHHHHHHHTTCC
T ss_pred -----------------------cee-eh-----hhhhcCCCCCCCCCEEEEechhhcC----HHHHHHHHHHHHhcCCE
Confidence 000 11 1122222334555689999999874 34445555443 34678
Q ss_pred EEEEEec
Q 007106 279 SMMFSAT 285 (618)
Q Consensus 279 ~l~lSAT 285 (618)
+|++--+
T Consensus 152 vvll~~~ 158 (189)
T 2l8b_A 152 VLITDSG 158 (189)
T ss_dssp EEEEESS
T ss_pred EEEeCCc
Confidence 8887554
No 192
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=91.33 E-value=0.51 Score=42.35 Aligned_cols=71 Identities=21% Similarity=0.268 Sum_probs=45.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCccE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~ 248 (618)
..++||.|+++..+..+++.|... ++.+..++++.+..++...+. ....|||+| +. ....+++.++++
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT-----~~-~~~Gldi~~~~~ 117 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AV-AARGLDISNVKH 117 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT--TCCEEEEC--------CHHHHHHHHTSSSEEEEE-----C-------CCCSBSE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc--CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc-----Ch-hhcCCCcccCCE
Confidence 568999999999999999999875 467888888776555443332 357899999 22 233456788888
Q ss_pred EEE
Q 007106 249 VVL 251 (618)
Q Consensus 249 vVi 251 (618)
||.
T Consensus 118 VI~ 120 (185)
T 2jgn_A 118 VIN 120 (185)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 193
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.33 E-value=0.44 Score=44.62 Aligned_cols=22 Identities=23% Similarity=-0.034 Sum_probs=17.1
Q ss_pred CCCCEEEEccCCChhHHHHHHH
Q 007106 135 QGRDMIGRARTGTGKTLAFGIP 156 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~l~~ 156 (618)
.+.-++|.+|+|+|||..+...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l 44 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTL 44 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHH
Confidence 4566899999999999755443
No 194
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=91.28 E-value=0.73 Score=40.70 Aligned_cols=71 Identities=10% Similarity=0.225 Sum_probs=53.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCccE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~ 248 (618)
..++||.|+++..+..+++.|.+. ++.+..+++..+..++...+. ....|+|+| + +....+++.++++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT-----~-~~~~Gldi~~~~~ 102 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT-----N-LFGRGMDIERVNI 102 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEES-----S-CCSTTCCGGGCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEEC-----C-chhcCcchhhCCE
Confidence 457999999999999999999876 577888888877665544333 358999999 2 2334566778888
Q ss_pred EEE
Q 007106 249 VVL 251 (618)
Q Consensus 249 vVi 251 (618)
||.
T Consensus 103 Vi~ 105 (172)
T 1t5i_A 103 AFN 105 (172)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 195
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.21 E-value=0.19 Score=47.37 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=17.1
Q ss_pred HhCCCCEEEEccCCChhHHHHH
Q 007106 133 AMQGRDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 133 i~~~~~~ll~~~tGsGKT~~~l 154 (618)
+..+.-+.|.+|+|+|||..+.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHH
Confidence 3455678999999999997543
No 196
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=90.81 E-value=0.39 Score=46.76 Aligned_cols=17 Identities=18% Similarity=0.095 Sum_probs=14.3
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
..+++.+|+|+|||..+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999754
No 197
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.75 E-value=0.63 Score=42.69 Aligned_cols=22 Identities=18% Similarity=-0.091 Sum_probs=16.8
Q ss_pred CCCCEEEEccCCChhHHHHHHH
Q 007106 135 QGRDMIGRARTGTGKTLAFGIP 156 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~l~~ 156 (618)
.+.-+++.+++|+|||..+...
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l 40 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQT 40 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3456899999999999755433
No 198
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=90.72 E-value=0.61 Score=48.64 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=29.0
Q ss_pred CCCCccCCCCCHHHHHHHHHcC--CCCChHHHHHHHHHHh--CCCCEEEEccCCChhHHHH
Q 007106 97 EGLDISKLDISQDIVAALARRG--ISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~--~~~l~~~Q~~~i~~i~--~~~~~ll~~~tGsGKT~~~ 153 (618)
+...|+++.-..+.++.+...- +..+ ..+..+- -.+.+++.+|+|+|||+.+
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~-----~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDP-----SKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCT-----HHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhCh-----HHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 3456777766666666554320 1111 1111111 1246999999999999754
No 199
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.57 E-value=0.16 Score=49.64 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=17.0
Q ss_pred HhCCCCEEEEccCCChhHHHHH
Q 007106 133 AMQGRDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 133 i~~~~~~ll~~~tGsGKT~~~l 154 (618)
+..+.-++|.+++|+|||..+.
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHH
Confidence 3445668999999999997543
No 200
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=90.54 E-value=1.8 Score=46.59 Aligned_cols=75 Identities=13% Similarity=0.134 Sum_probs=58.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCC-CCcEEEEEcCcchhhhhHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcc
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~-~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~ 247 (618)
..++||+|+|+..+..+++.+.+.++ .+.+..++++.+...+...+. ...+||||| .+....+++.+++
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT------~~~~~GiDip~v~ 361 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT------DVGARGMDFPNVH 361 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC------GGGTSSCCCTTCC
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEc------chhhcCCCcccCC
Confidence 56899999999999999999988654 678888898887666544433 358899999 3444567788899
Q ss_pred EEEEch
Q 007106 248 FVVLDE 253 (618)
Q Consensus 248 ~vViDE 253 (618)
+||.-.
T Consensus 362 ~VI~~~ 367 (579)
T 3sqw_A 362 EVLQIG 367 (579)
T ss_dssp EEEEES
T ss_pred EEEEcC
Confidence 988543
No 201
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.27 E-value=0.51 Score=57.48 Aligned_cols=44 Identities=20% Similarity=0.147 Sum_probs=31.6
Q ss_pred HHHHhC------CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc
Q 007106 130 LEPAMQ------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (618)
Q Consensus 130 i~~i~~------~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt 182 (618)
++.++. +.++++.+|+|+|||..++..+.+... .+.+++|+...
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~---------~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR---------EGKTCAFIDAE 1464 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT---------TTCCEEEECTT
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH---------cCCcEEEEEcc
Confidence 555555 578999999999999877555544432 26678888765
No 202
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=90.26 E-value=0.22 Score=50.27 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=13.9
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
.+++.+|.|+|||..+
T Consensus 40 ~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4799999999999754
No 203
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=90.07 E-value=0.52 Score=47.36 Aligned_cols=38 Identities=18% Similarity=0.091 Sum_probs=24.7
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt 182 (618)
+.-++|.+++|+|||..++..+.... . .+..++|+..-
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~-~--------~g~~vlyi~~E 111 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQ-K--------AGGTCAFIDAE 111 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH-H--------TTCCEEEEESS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHH-H--------CCCeEEEEECC
Confidence 45689999999999976544443332 2 14467777653
No 204
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.00 E-value=0.3 Score=46.00 Aligned_cols=52 Identities=21% Similarity=0.234 Sum_probs=31.2
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
+.-++|.+++|+|||..++..+++.+.+. +..++++.-. .-..++.+.+...
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--------~~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY--------GEPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH--------CCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc--------CCCceeeccc-CCHHHHHHHHHHc
Confidence 35589999999999976655444433321 3356666532 3345555555443
No 205
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=89.88 E-value=2 Score=40.43 Aligned_cols=54 Identities=11% Similarity=0.027 Sum_probs=30.4
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHh--CCCCEEEEccCCChhHHHH
Q 007106 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~--~~~~~ll~~~tGsGKT~~~ 153 (618)
+...|+++.-.++....++..... + ....++..+. -.+.+++.+|+|+|||..+
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~-~--~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEF-L--KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHH-H--HCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH-H--HCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 455677776666666666432110 0 0112333321 1234999999999999743
No 206
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=89.77 E-value=1 Score=52.76 Aligned_cols=99 Identities=15% Similarity=0.162 Sum_probs=73.6
Q ss_pred EeccCcchhHHHH-HHHHHhccCCeEEEEecchhHHHHHHHHHHcc-----CCccccccCCCHHHHHHHHHHHhcCCccE
Q 007106 323 IATSMYEKPSIIG-QLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-----YNCEPLHGDISQSQRERTLSAFRDGRFNI 396 (618)
Q Consensus 323 ~~~~~~~k~~~l~-~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~lhg~~~~~~r~~i~~~f~~g~~~v 396 (618)
......-|..... .++.....+.+++|.||++.-++.+++.+.+. +.+..+++..+..++..+++.+.+|+.+|
T Consensus 630 ~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dI 709 (1151)
T 2eyq_A 630 CGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDI 709 (1151)
T ss_dssp ECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSE
T ss_pred ECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCE
Confidence 3344445554433 23333445679999999999999998888653 45777899899999999999999999999
Q ss_pred EEEcc-ccccCCCCCCccEEEEcCCC
Q 007106 397 LIATD-VAARGLDVPNVDLIIHYELP 421 (618)
Q Consensus 397 LVaT~-~~~~Gidi~~~~~VI~~~~p 421 (618)
+|+|. .+...+.+.++.+||.-...
T Consensus 710 vV~T~~ll~~~~~~~~l~lvIiDEaH 735 (1151)
T 2eyq_A 710 LIGTHKLLQSDVKFKDLGLLIVDEEH 735 (1151)
T ss_dssp EEECTHHHHSCCCCSSEEEEEEESGG
T ss_pred EEECHHHHhCCccccccceEEEechH
Confidence 99995 45556888888888864443
No 207
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.43 E-value=0.93 Score=43.60 Aligned_cols=26 Identities=15% Similarity=0.004 Sum_probs=19.4
Q ss_pred HHhCCCCEEEEccCCChhHHHHHHHH
Q 007106 132 PAMQGRDMIGRARTGTGKTLAFGIPI 157 (618)
Q Consensus 132 ~i~~~~~~ll~~~tGsGKT~~~l~~~ 157 (618)
-+..+.-++|.+++|+|||..++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 34566779999999999997554433
No 208
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=89.06 E-value=0.82 Score=45.64 Aligned_cols=38 Identities=13% Similarity=0.105 Sum_probs=25.1
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcC
Q 007106 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~P 181 (618)
.+.-++|.+++|+|||..++..+...... +..++++.-
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~---------g~~vlyi~~ 97 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA---------GGIAAFIDA 97 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---------TCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---------CCeEEEEEC
Confidence 34568999999999997655444433221 456777764
No 209
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=88.50 E-value=0.98 Score=43.99 Aligned_cols=71 Identities=15% Similarity=0.235 Sum_probs=55.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCccE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~ 248 (618)
..++||.|+++..++.+++.+.+. ++.+..+++..+...+...+. ...+|+|+| .+....+++.++++
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~--g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT------~va~~Gidi~~v~~ 99 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT------DVAARGLDIPQVDL 99 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT--TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC------STTTCSTTCCCCSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe------chhhcCccccceeE
Confidence 457999999999999999998775 577888999887666554433 358999999 33445677889999
Q ss_pred EEE
Q 007106 249 VVL 251 (618)
Q Consensus 249 vVi 251 (618)
||.
T Consensus 100 VI~ 102 (300)
T 3i32_A 100 VVH 102 (300)
T ss_dssp EEE
T ss_pred EEE
Confidence 884
No 210
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=88.48 E-value=1.8 Score=44.12 Aligned_cols=72 Identities=21% Similarity=0.283 Sum_probs=55.5
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcc
Q 007106 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (618)
Q Consensus 172 ~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~ 247 (618)
...++||+|+++..+..+++.+.+. ++.+..+++..+..++...+. ...+|+|+| + +....+++.+++
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~-~~~~Gidip~v~ 346 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----A-VAARGLDISNVK 346 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----H-HHHTTSCCCCEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC--CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----C-hhhcCCCcccCC
Confidence 3678999999999999999999875 467888888887665544332 357899999 3 344467788899
Q ss_pred EEEE
Q 007106 248 FVVL 251 (618)
Q Consensus 248 ~vVi 251 (618)
+||.
T Consensus 347 ~Vi~ 350 (417)
T 2i4i_A 347 HVIN 350 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8884
No 211
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=88.16 E-value=1.4 Score=49.30 Aligned_cols=16 Identities=38% Similarity=0.281 Sum_probs=14.2
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
++++.+|+|+|||..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4999999999999855
No 212
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=87.48 E-value=3 Score=40.44 Aligned_cols=45 Identities=11% Similarity=0.205 Sum_probs=23.9
Q ss_pred CCccEEEEchhhhhc-cCCcHHHHHHHHHhCCCCCcEEEEEecCCh
Q 007106 244 SEVQFVVLDEADQML-SVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (618)
Q Consensus 244 ~~~~~vViDEaH~~~-~~~~~~~~~~il~~l~~~~~~l~lSAT~~~ 288 (618)
.++++|||||.-.+. +......+..+...+.+..-++.+.++...
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~ 224 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ 224 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcH
Confidence 467899999994332 111223333444444444445566776443
No 213
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=87.34 E-value=2.8 Score=37.80 Aligned_cols=18 Identities=11% Similarity=0.296 Sum_probs=15.0
Q ss_pred CCCCEEEEccCCChhHHH
Q 007106 135 QGRDMIGRARTGTGKTLA 152 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~ 152 (618)
.++-++|.+|+|+|||..
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 455689999999999973
No 214
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=87.23 E-value=0.18 Score=56.02 Aligned_cols=41 Identities=17% Similarity=0.334 Sum_probs=25.8
Q ss_pred CccEEEEchhhhhccCC------c----HHHHHHHHHhCCCCCcEEEEEec
Q 007106 245 EVQFVVLDEADQMLSVG------F----AEDVEVILERLPQNRQSMMFSAT 285 (618)
Q Consensus 245 ~~~~vViDEaH~~~~~~------~----~~~~~~il~~l~~~~~~l~lSAT 285 (618)
.-.+|+|||+|.+.... . ..++...+..+....+++++-||
T Consensus 297 ~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaT 347 (806)
T 3cf2_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (806)
T ss_dssp CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEEC
T ss_pred CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEec
Confidence 45789999999876421 1 22334445555556677777777
No 215
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=86.72 E-value=1.2 Score=51.72 Aligned_cols=80 Identities=14% Similarity=0.226 Sum_probs=65.3
Q ss_pred HhccCCeEEEEecchhHHHHHHHHHHc----cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccc-----cccCCCCC
Q 007106 340 EHAKGGKCIVFTQTKRDADRLAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-----AARGLDVP 410 (618)
Q Consensus 340 ~~~~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~-----~~~Gidi~ 410 (618)
....+.++||.+|+++-+..+++.+.+ .+.+..+||+++..++...++.+.++..+|+|+|+- +.. +++.
T Consensus 117 ~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~ 195 (1104)
T 4ddu_A 117 LARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQK 195 (1104)
T ss_dssp HHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTS
T ss_pred HHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hccc
Confidence 334577899999999999999999977 357888999999989999999999999999999952 222 4567
Q ss_pred CccEEEEcCC
Q 007106 411 NVDLIIHYEL 420 (618)
Q Consensus 411 ~~~~VI~~~~ 420 (618)
++.+||.-.+
T Consensus 196 ~l~~lViDEa 205 (1104)
T 4ddu_A 196 RFDFVFVDDV 205 (1104)
T ss_dssp CCSEEEESCH
T ss_pred CcCEEEEeCC
Confidence 7888887555
No 216
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=86.64 E-value=0.53 Score=47.01 Aligned_cols=39 Identities=15% Similarity=0.084 Sum_probs=24.9
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcH
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~ 183 (618)
+.-++|.+|+|+|||..++ .++..+.. .+..++++....
T Consensus 61 G~i~~I~GppGsGKSTLal-~la~~~~~--------~gg~VlyId~E~ 99 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLAL-HAIAEAQK--------MGGVAAFIDAEH 99 (356)
T ss_dssp TEEEEEEESTTSSHHHHHH-HHHHHHHH--------TTCCEEEEESSC
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHHHHh--------cCCeEEEEeccc
Confidence 4558999999999997543 33333322 145677876543
No 217
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=86.52 E-value=3.5 Score=39.96 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=15.3
Q ss_pred CCCEEEEccCCChhHHHHH
Q 007106 136 GRDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l 154 (618)
+..+++.+++|+|||.++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999997554
No 218
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=86.39 E-value=2.2 Score=46.65 Aligned_cols=77 Identities=19% Similarity=0.317 Sum_probs=59.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHh---h-cCCCEEEEChHHHHHHHHhcCCCCCCccE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---D-YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l---~-~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~ 248 (618)
+.++||+|+|+..++.+++.|.+. ++.+..+++......+...+ . ...+|+|+| + +....+++.++++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~--gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT-----~-~l~~GlDip~v~l 516 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI--GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGI-----N-LLREGLDIPEVSL 516 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEES-----C-CCSTTCCCTTEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc--CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEec-----c-hhhCCcccCCCCE
Confidence 568999999999999999999886 46778888877665554443 2 358999999 2 3345677889999
Q ss_pred EEEchhhhh
Q 007106 249 VVLDEADQM 257 (618)
Q Consensus 249 vViDEaH~~ 257 (618)
||+-|++.+
T Consensus 517 Vi~~d~d~~ 525 (661)
T 2d7d_A 517 VAILDADKE 525 (661)
T ss_dssp EEETTTTCC
T ss_pred EEEeCcccc
Confidence 999888753
No 219
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=85.81 E-value=0.82 Score=44.60 Aligned_cols=41 Identities=10% Similarity=-0.032 Sum_probs=27.3
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHH
Q 007106 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~L 185 (618)
-++|.+|+|+|||..++..+...... +.+.+++++..-..+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~-------g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ-------YPDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH-------CTTCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc-------CCCceEEEEeccchh
Confidence 47899999999998665554443321 124578888765444
No 220
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=85.54 E-value=0.77 Score=48.95 Aligned_cols=19 Identities=26% Similarity=0.232 Sum_probs=15.9
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007106 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~ 153 (618)
.+..+++.+|+|+|||..+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567999999999999754
No 221
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=85.53 E-value=1.7 Score=43.04 Aligned_cols=17 Identities=12% Similarity=-0.162 Sum_probs=14.8
Q ss_pred CCCEEEEccCCChhHHH
Q 007106 136 GRDMIGRARTGTGKTLA 152 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~ 152 (618)
+..++|.++.|+|||..
T Consensus 31 ~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp CSEEEEECCTTSSHHHH
T ss_pred CCeEEEECCCcCCHHHH
Confidence 46799999999999974
No 222
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=85.32 E-value=2.1 Score=42.18 Aligned_cols=22 Identities=18% Similarity=-0.115 Sum_probs=16.9
Q ss_pred CCCEEEEccCCChhHHHHHHHH
Q 007106 136 GRDMIGRARTGTGKTLAFGIPI 157 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~ 157 (618)
+.-++|.+++|+|||..++..+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la 128 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLS 128 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHH
Confidence 4568999999999997654433
No 223
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=85.18 E-value=1.4 Score=44.03 Aligned_cols=38 Identities=18% Similarity=0.096 Sum_probs=25.8
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcC
Q 007106 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~P 181 (618)
.+.-++|.+++|+|||..++..+...... +..++++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~---------g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---------GKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---------TCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEeC
Confidence 34568999999999998765544433321 446777765
No 224
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=84.94 E-value=1.2 Score=46.01 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=47.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh-cCCCEEEEChHHHHHHHHhcCCCCCCccEEE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vV 250 (618)
+.++||+||++.-++.+++.|++. .+.+..+++... ......+. ...+||||| + +....+++. +++||
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~--~~~v~~lhg~~R-~~~~~~F~~g~~~vLVaT-----~-v~e~GiDip-v~~VI 245 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA--GKSVVVLNRKTF-EREYPTIKQKKPDFILAT-----D-IAEMGANLC-VERVL 245 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT--TCCEEECCSSSC-C--------CCCSEEEES-----S-STTCCTTCC-CSEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc--CCCEEEecchhH-HHHHhhhcCCCceEEEEC-----C-hhheeeccC-ceEEE
Confidence 458999999999999999999886 577888887332 22222333 358999999 3 334456777 88877
No 225
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=84.62 E-value=2.2 Score=43.21 Aligned_cols=71 Identities=13% Similarity=0.201 Sum_probs=55.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCccE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~ 248 (618)
..++||+|+++..+..+++.+.+. ...+..+++..+..++...++ ...+|+|+| .+....+++.++++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T------~~~~~Gidip~~~~ 337 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE--GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT------NVCARGIDVEQVSV 337 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC------GGGTSSCCCTTEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEc------CccccCCCccCCCE
Confidence 458999999999999999999886 467888888887666544432 357899999 23445677889999
Q ss_pred EEE
Q 007106 249 VVL 251 (618)
Q Consensus 249 vVi 251 (618)
||.
T Consensus 338 Vi~ 340 (412)
T 3fht_A 338 VIN 340 (412)
T ss_dssp EEE
T ss_pred EEE
Confidence 884
No 226
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=84.46 E-value=4.7 Score=36.71 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=52.9
Q ss_pred CeEEEEecchhHHHHHHHHHHc------cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccc-----c-ccCCCCCCc
Q 007106 345 GKCIVFTQTKRDADRLAHAMAK------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-----A-ARGLDVPNV 412 (618)
Q Consensus 345 ~~~lVf~~~~~~~~~l~~~L~~------~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~-----~-~~Gidi~~~ 412 (618)
.++||.+|+++-++.+++.+.+ .+.+..++++.+..++. +.+.++..+|+|+|.- + ...+++.++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 4899999999999988887754 35677788888765543 3345567799999952 2 223667788
Q ss_pred cEEEEcCCC
Q 007106 413 DLIIHYELP 421 (618)
Q Consensus 413 ~~VI~~~~p 421 (618)
++||.-.+.
T Consensus 160 ~~lViDEah 168 (220)
T 1t6n_A 160 KHFILDECD 168 (220)
T ss_dssp CEEEEESHH
T ss_pred CEEEEcCHH
Confidence 888865444
No 227
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=83.93 E-value=2.5 Score=42.53 Aligned_cols=75 Identities=12% Similarity=0.170 Sum_probs=57.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCccE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~ 248 (618)
..++||+|+++..+..+++.+++. ...+..+++..+..++...++ ...+|+|+| .+....+++.++++
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T------~~~~~Gidip~~~~ 314 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE--GHEVSILHGDLQTQERDRLIDDFREGRSKVLITT------NVLARGIDIPTVSM 314 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEEC------GGGSSSCCCTTEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEEC------ChhhcCCCcccCCE
Confidence 568999999999999999999876 467888888877665544332 347899999 23445678889999
Q ss_pred EEEchhh
Q 007106 249 VVLDEAD 255 (618)
Q Consensus 249 vViDEaH 255 (618)
||.-+..
T Consensus 315 Vi~~~~p 321 (395)
T 3pey_A 315 VVNYDLP 321 (395)
T ss_dssp EEESSCC
T ss_pred EEEcCCC
Confidence 9964443
No 228
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=83.84 E-value=2.1 Score=48.37 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.7
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
.++++.+|+|+|||..+
T Consensus 192 ~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCEEEECTTSCHHHHH
T ss_pred CceEEEcCCCCCHHHHH
Confidence 46999999999999754
No 229
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=83.82 E-value=9.6 Score=36.97 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=14.0
Q ss_pred CEEEEccCCChhHHHHH
Q 007106 138 DMIGRARTGTGKTLAFG 154 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~l 154 (618)
-+++.+++|+|||.++.
T Consensus 106 vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEcCCCChHHHHHH
Confidence 47899999999997543
No 230
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=83.43 E-value=2.6 Score=41.80 Aligned_cols=71 Identities=13% Similarity=0.281 Sum_probs=53.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCccE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~ 248 (618)
..++||+|+++..+..+++.+.+. +..+..+++..+...+...+. ...+|+|+| +.+. ..+++.++++
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-----~~~~-~Gid~~~~~~ 309 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDI--GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIAT-----DVMS-RGIDVNDLNC 309 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT--TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEEC-----TTHH-HHCCCSCCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc--CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chhh-cCCCcccCCE
Confidence 567999999999999999999886 467888888877665544332 357899999 3333 3466888888
Q ss_pred EEE
Q 007106 249 VVL 251 (618)
Q Consensus 249 vVi 251 (618)
||.
T Consensus 310 Vi~ 312 (367)
T 1hv8_A 310 VIN 312 (367)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 231
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=83.31 E-value=2.7 Score=43.25 Aligned_cols=69 Identities=17% Similarity=0.247 Sum_probs=54.2
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCccEEE
Q 007106 175 LCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 175 ~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vV 250 (618)
++||+|+++..+..+++.+.+. ++.+..++++....++...+. ...+||||| .+....+++.++++||
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT------~v~~rGlDi~~v~~VI 373 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK--EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIAT------SVASRGLDIKNIKHVI 373 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT--TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEEC------GGGTSSCCCTTCCEEE
T ss_pred CEEEEEeCcHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEc------hhhhCCCCcccCCEEE
Confidence 4999999999999999999876 567888898887666554443 358999999 2445567888999988
Q ss_pred E
Q 007106 251 L 251 (618)
Q Consensus 251 i 251 (618)
.
T Consensus 374 ~ 374 (434)
T 2db3_A 374 N 374 (434)
T ss_dssp E
T ss_pred E
Confidence 4
No 232
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=83.25 E-value=0.95 Score=47.79 Aligned_cols=52 Identities=10% Similarity=0.001 Sum_probs=30.4
Q ss_pred HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007106 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (618)
Q Consensus 133 i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l 193 (618)
+..+.-++|.+++|+|||..++..+...+ . ..+..++++.- ..-..|+..++
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a-~-------~~g~~vl~~s~-E~s~~~l~~r~ 290 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWG-T-------AMGKKVGLAML-EESVEETAEDL 290 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHT-T-------TSCCCEEEEES-SSCHHHHHHHH
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHH-H-------hcCCcEEEEec-cCCHHHHHHHH
Confidence 33445689999999999976544444332 1 11446777764 23344555544
No 233
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=83.11 E-value=9.9 Score=35.21 Aligned_cols=74 Identities=19% Similarity=0.271 Sum_probs=53.3
Q ss_pred CCeEEEEecchhHHHHHHHHHHc-----cCCccccccCCCHHHHHHHHHHHhcCCccEEEEcc-----cccc-CCCCCCc
Q 007106 344 GGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAAR-GLDVPNV 412 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~-----~~~~-Gidi~~~ 412 (618)
+.++||.+|+++-+..+++.+.+ .+.+..++++.+..++...+.. ..+|+|+|. .+.. .+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 55799999999999988877754 3677788888877665544432 478999995 2332 3678888
Q ss_pred cEEEEcCCC
Q 007106 413 DLIIHYELP 421 (618)
Q Consensus 413 ~~VI~~~~p 421 (618)
.+||.-.+.
T Consensus 178 ~~lViDEah 186 (242)
T 3fe2_A 178 TYLVLDEAD 186 (242)
T ss_dssp CEEEETTHH
T ss_pred cEEEEeCHH
Confidence 888875443
No 234
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=83.02 E-value=5.2 Score=43.67 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=58.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHh---h-cCCCEEEEChHHHHHHHHhcCCCCCCccE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---D-YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l---~-~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~ 248 (618)
+.++||+|+|+..+..+++.|.+. ++.+..+++..+...+...+ . ...+|+|+| + +....+++.++++
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~--gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT-----~-~l~~GlDip~v~l 510 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH--GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----N-LLREGLDIPEVSL 510 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----C-CCCTTCCCTTEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc--CCCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-----C-hhhcCccCCCCCE
Confidence 568999999999999999999886 46777888877665554443 2 348999999 2 3345567889999
Q ss_pred EEEchhhh
Q 007106 249 VVLDEADQ 256 (618)
Q Consensus 249 vViDEaH~ 256 (618)
||+=+++.
T Consensus 511 VI~~d~d~ 518 (664)
T 1c4o_A 511 VAILDADK 518 (664)
T ss_dssp EEETTTTS
T ss_pred EEEeCCcc
Confidence 99877764
No 235
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=82.41 E-value=2.7 Score=45.96 Aligned_cols=68 Identities=12% Similarity=0.130 Sum_probs=49.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh-cCCCEEEEChHHHHHHHHhcCCCCCCccEEE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vV 250 (618)
..++||+||++.-++.+++.|++. .+.+..+++... ....+.+. ...+|||+| + +....+++. +++||
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~--g~~v~~lHg~eR-~~v~~~F~~g~~~VLVaT-----d-v~e~GIDip-v~~VI 478 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA--GKRVIQLNRKSY-DTEYPKCKNGDWDFVITT-----D-ISEMGANFG-ASRVI 478 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT--TCCEEEECSSSH-HHHGGGGGTCCCSEEEEC-----G-GGGTTCCCC-CSEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC--CCeEEEeChHHH-HHHHHHHHCCCceEEEEC-----c-hhhcceeeC-CcEEE
Confidence 568999999999999999999876 577888888422 22222333 458999999 3 344456677 88777
No 236
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=82.41 E-value=3 Score=42.94 Aligned_cols=68 Identities=12% Similarity=0.076 Sum_probs=47.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~v 249 (618)
..++||+||++.-++.+++.+.+. ++.+..+++...............+|||+| +. ....+++. +..|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT-----~v-~e~GiDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA--GKKVLYLNRKTFESEYPKCKSEKWDFVITT-----DI-SEMGANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT--TCCEEEESTTTHHHHTTHHHHSCCSEEEEC-----GG-GGTSCCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc--CCeEEEeCCccHHHHHHhhcCCCCeEEEEC-----ch-HHcCcccC-CcEE
Confidence 457999999999999999999887 577888887643322222333458999999 33 34455665 5555
No 237
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=82.34 E-value=2.5 Score=42.47 Aligned_cols=74 Identities=9% Similarity=0.189 Sum_probs=55.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCccE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~ 248 (618)
..++||+|+++..+..+++.+.+. ++.+..++++.+...+...++ ....|+|+| ......+++.++++
T Consensus 250 ~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T------~~~~~Gidi~~~~~ 321 (391)
T 1xti_A 250 FNQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT------NLFGRGMDIERVNI 321 (391)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEES------CCCSSCBCCTTEEE
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEC------ChhhcCCCcccCCE
Confidence 568999999999999999999876 467888888877655544333 357899999 23344567888999
Q ss_pred EEEchh
Q 007106 249 VVLDEA 254 (618)
Q Consensus 249 vViDEa 254 (618)
||.-+.
T Consensus 322 Vi~~~~ 327 (391)
T 1xti_A 322 AFNYDM 327 (391)
T ss_dssp EEESSC
T ss_pred EEEeCC
Confidence 886443
No 238
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=82.00 E-value=3.2 Score=42.14 Aligned_cols=71 Identities=10% Similarity=0.225 Sum_probs=54.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCccE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~ 248 (618)
..++||+|+++..+..+++.+.+. ++.+..+++..+..++...+. ....|||+| .+....+++.++++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T------~~~~~Gidi~~v~~ 347 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA--NFTVSSMHGDMPQKERESIMKEFRSGASRVLIST------DVWARGLDVPQVSL 347 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEEC------GGGSSSCCCTTEEE
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC--CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEC------ChhhCcCCcccCCE
Confidence 358999999999999999999876 467888888877665544332 357899999 23445677889999
Q ss_pred EEE
Q 007106 249 VVL 251 (618)
Q Consensus 249 vVi 251 (618)
||.
T Consensus 348 Vi~ 350 (410)
T 2j0s_A 348 IIN 350 (410)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 239
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=81.90 E-value=2.4 Score=51.76 Aligned_cols=47 Identities=15% Similarity=0.055 Sum_probs=32.7
Q ss_pred hCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHH
Q 007106 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (618)
Q Consensus 134 ~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 190 (618)
..+.++++.+++|+|||..++..+.+.+.+ +.+++|+.- .++.++++
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~---------Ge~~~Fit~-ee~~~~L~ 1125 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE---------GKTCAFIDA-EHALDPIY 1125 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTT---------TCCEEEECT-TSCCCHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHc---------CCeEEEEEc-cccHHHHH
Confidence 355789999999999998776665555422 667888764 34445554
No 240
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=81.62 E-value=3.8 Score=41.59 Aligned_cols=18 Identities=17% Similarity=-0.153 Sum_probs=14.8
Q ss_pred CCEEEEccCCChhHHHHH
Q 007106 137 RDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l 154 (618)
.-++|.++.|+|||..+.
T Consensus 179 ei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCH 196 (400)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred cEEEEEcCCCCChHHHHH
Confidence 458899999999997554
No 241
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=81.40 E-value=3.1 Score=42.04 Aligned_cols=71 Identities=7% Similarity=0.113 Sum_probs=53.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCccE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~ 248 (618)
..++||+|+++..+..+++.+.+. ++.+..+++..+...+...+. ....|||+| .+....+++.++++
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T------~~~~~Gidip~~~~ 329 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL--GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCS------DLLTRGIDIQAVNV 329 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH--TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEES------SCSSSSCCCTTEEE
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc------CccccCCCccCCCE
Confidence 468999999999999999999886 467888888877665544332 347899999 23344567888888
Q ss_pred EEE
Q 007106 249 VVL 251 (618)
Q Consensus 249 vVi 251 (618)
||.
T Consensus 330 Vi~ 332 (400)
T 1s2m_A 330 VIN 332 (400)
T ss_dssp EEE
T ss_pred EEE
Confidence 884
No 242
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=81.06 E-value=4.6 Score=45.18 Aligned_cols=19 Identities=37% Similarity=0.424 Sum_probs=15.6
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007106 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~ 153 (618)
.+..+++.+|+|+|||+.+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 3467999999999999743
No 243
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=80.79 E-value=1.5 Score=43.23 Aligned_cols=23 Identities=17% Similarity=0.010 Sum_probs=17.3
Q ss_pred CCCEEEEccCCChhHHHHHHHHH
Q 007106 136 GRDMIGRARTGTGKTLAFGIPIL 158 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l 158 (618)
+.-++|.+++|+|||..++..+.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999976544443
No 244
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=80.63 E-value=2.9 Score=50.35 Aligned_cols=39 Identities=18% Similarity=0.093 Sum_probs=28.5
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc
Q 007106 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt 182 (618)
.+..++|.+++|+|||..++..++..+.. +.+++|+.-.
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~~---------G~~vlYI~te 71 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---------GKTCAFIDAE 71 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---------TCCEEEECTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhC---------CCceEEEEec
Confidence 35679999999999998766655555432 5578888754
No 245
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=80.57 E-value=3.7 Score=42.53 Aligned_cols=69 Identities=16% Similarity=0.063 Sum_probs=49.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vV 250 (618)
..++||+||++.-++++++.|.+. ++.+..+++...............+||||| .+....+++.+ ++||
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~--g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT------~v~~~GiDip~-~~VI 256 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS--GKRVIQLSRKTFDTEYPKTKLTDWDFVVTT------DISEMGANFRA-GRVI 256 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT--TCCEEEECTTTHHHHGGGGGSSCCSEEEEC------GGGGSSCCCCC-SEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc--CCeEEECCHHHHHHHHHhhccCCceEEEEC------CHHHhCcCCCC-CEEE
Confidence 447999999999999999999876 467777777655332222223458999999 34445567777 7666
No 246
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=80.41 E-value=2.6 Score=41.80 Aligned_cols=43 Identities=12% Similarity=-0.055 Sum_probs=24.6
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt 182 (618)
.-++|.+++|+|||..++..+...... ....+.+..++++.-.
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~---~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLP---GAGGYPGGKIIFIDTE 165 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSC---BTTTBCCCEEEEEESS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcc---cccCCCCCeEEEEECC
Confidence 458999999999997554433322110 0000124578887653
No 247
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=81.46 E-value=0.34 Score=42.80 Aligned_cols=71 Identities=17% Similarity=0.287 Sum_probs=49.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCccE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~ 248 (618)
..++||.|+++..+..+++.|.+. ++.+..++++.+...+...+. ....|||+| +. ....+++.++++
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-----~~-~~~Gid~~~~~~ 101 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA--GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-----DV-AARGIDIPDVSH 101 (170)
Confidence 457999999999999999888765 466777787766555443332 247899999 22 223445677777
Q ss_pred EEE
Q 007106 249 VVL 251 (618)
Q Consensus 249 vVi 251 (618)
||.
T Consensus 102 Vi~ 104 (170)
T 2yjt_D 102 VFN 104 (170)
Confidence 774
No 248
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=79.45 E-value=4.6 Score=42.69 Aligned_cols=76 Identities=13% Similarity=0.108 Sum_probs=59.2
Q ss_pred cCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccc------cCCCCCCccEE
Q 007106 343 KGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA------RGLDVPNVDLI 415 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~------~Gidi~~~~~V 415 (618)
..+.+||++|++.-++...+.|.+. +.+..+|+..+..++..++..+..+..+|+++|+--- .-++..++.+|
T Consensus 64 ~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~v 143 (523)
T 1oyw_A 64 LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLL 143 (523)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEE
T ss_pred hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEE
Confidence 3568999999999999998888654 7888899999999999999999999999999995311 11333456666
Q ss_pred EEc
Q 007106 416 IHY 418 (618)
Q Consensus 416 I~~ 418 (618)
|.-
T Consensus 144 ViD 146 (523)
T 1oyw_A 144 AVD 146 (523)
T ss_dssp EES
T ss_pred EEe
Confidence 653
No 249
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=79.12 E-value=14 Score=37.77 Aligned_cols=52 Identities=12% Similarity=0.141 Sum_probs=26.6
Q ss_pred CCccEEEEchhhhhccC-CcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHH
Q 007106 244 SEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTN 295 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~-~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~ 295 (618)
..+++||||=+=++... ..-..+..+...+.+..-++++.|+-.......+.
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a~ 231 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVAR 231 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHH
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHHH
Confidence 46788999966443211 11223333444444555566677765444443333
No 250
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=78.71 E-value=5.9 Score=41.44 Aligned_cols=54 Identities=11% Similarity=0.030 Sum_probs=28.3
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHH--hCCCCEEEEccCCChhHHHH
Q 007106 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPA--MQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i--~~~~~~ll~~~tGsGKT~~~ 153 (618)
+...|+++.-.++.+..++..-.. +. ....+..+ .-.+.+++.+|+|+|||+.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~--~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LK--NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HH--CGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hh--chhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 345677776666666665432100 00 00011111 01235999999999999744
No 251
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=78.67 E-value=9.2 Score=35.71 Aligned_cols=74 Identities=18% Similarity=0.232 Sum_probs=51.9
Q ss_pred CCeEEEEecchhHHHHHHHHHHc-----cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccc-----cc--cCCCCCC
Q 007106 344 GGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-----AA--RGLDVPN 411 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~-----~~--~Gidi~~ 411 (618)
..++||.+|+++-+..+++.+.+ .+.+..++++....++...+ ....+|+|+|.- +. ..+++.+
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 45799999999999988877643 36677788887765543332 246889999952 22 3467888
Q ss_pred ccEEEEcCCC
Q 007106 412 VDLIIHYELP 421 (618)
Q Consensus 412 ~~~VI~~~~p 421 (618)
+++||.-.+.
T Consensus 187 ~~~lViDEah 196 (249)
T 3ber_A 187 LKYLVMDEAD 196 (249)
T ss_dssp CCEEEECSHH
T ss_pred cCEEEEcChh
Confidence 8888865443
No 252
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=78.57 E-value=9 Score=39.34 Aligned_cols=74 Identities=27% Similarity=0.376 Sum_probs=52.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEc--------CcchhhhhHHhh----cCCCEEEEChHHHHHHHHhcC
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYG--------GTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNA 240 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g--------~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~~~ 240 (618)
+.++||.|+++..+..+++.+.+. ++.+..+++ +.+..++...+. ..+.|+|+| + .-...
T Consensus 361 ~~k~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T-----~-~~~~G 432 (494)
T 1wp9_A 361 NSKIIVFTNYRETAKKIVNELVKD--GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVAT-----S-VGEEG 432 (494)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHT--TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEEC-----G-GGGGG
T ss_pred CCeEEEEEccHHHHHHHHHHHHHc--CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEEC-----C-ccccC
Confidence 568999999999999999999887 577888888 554444433322 347899999 2 23345
Q ss_pred CCCCCccEEEEchh
Q 007106 241 LNLSEVQFVVLDEA 254 (618)
Q Consensus 241 ~~l~~~~~vViDEa 254 (618)
+++..+++||+-+.
T Consensus 433 ldl~~~~~Vi~~d~ 446 (494)
T 1wp9_A 433 LDVPEVDLVVFYEP 446 (494)
T ss_dssp GGSTTCCEEEESSC
T ss_pred CCchhCCEEEEeCC
Confidence 67888888885443
No 253
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=78.49 E-value=5 Score=43.12 Aligned_cols=59 Identities=8% Similarity=0.145 Sum_probs=51.4
Q ss_pred cCCeEEEEecchhHHHHHHHHHHc-cCCccccccCCCHHHHHHHHHHH--hcCCccEEEEcc
Q 007106 343 KGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAF--RDGRFNILIATD 401 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f--~~g~~~vLVaT~ 401 (618)
..+.+||++|++.-++...+.|.+ .+.+..+++.++..++..++..+ ..+..+||++|+
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 456999999999999998888865 48888999999999999888888 568899999997
No 254
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=78.35 E-value=6.3 Score=46.24 Aligned_cols=88 Identities=17% Similarity=0.127 Sum_probs=51.6
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHh
Q 007106 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218 (618)
Q Consensus 139 ~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l 218 (618)
-+|.|..|||||.+.+--+...+.+ . ....++|+|||.. +.-+..+++.+..+.
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~-~-----~~~~~il~lVP~q-~TFt~~~rl~~~l~~------------------- 57 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRR-A-----PFGKPIIFLVPDQ-MTFLMEYELAKTPDM------------------- 57 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHH-C-----TTSSCEEEECCGG-GHHHHHHHHTCCSSC-------------------
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHh-C-----CCCCcEEEEecCc-ccHHHHHHHHHhhhh-------------------
Confidence 4789999999998776555554433 1 1246799999974 333344444433211
Q ss_pred hcCCCEEEEChHHHHHH-HHhcCCCCCCccEEEEchhhh
Q 007106 219 DYGVDAVVGTPGRVIDL-IKRNALNLSEVQFVVLDEADQ 256 (618)
Q Consensus 219 ~~~~~Ilv~T~~~l~~~-l~~~~~~l~~~~~vViDEaH~ 256 (618)
....++-|.|..+|... +.... .....|+|+...
T Consensus 58 ~~~~~~~V~TFhsla~~il~~~g----~~~~~ild~~~~ 92 (1166)
T 3u4q_B 58 GGMIRAQVFSFSRLAWRVLQHTG----GMSRPFLTSTGV 92 (1166)
T ss_dssp SEESSEEEECHHHHHHHHHHHHS----CTTSCEECHHHH
T ss_pred cceeeeEEecHHHHHHHHHHHcC----CCcccCcCHHHH
Confidence 00136889999988544 33322 123456777653
No 255
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=78.33 E-value=13 Score=33.20 Aligned_cols=75 Identities=17% Similarity=0.234 Sum_probs=51.9
Q ss_pred cCCeEEEEecchhHHHHHHHHHHcc---CCccccccCCCHHHHHHHHHHHhcCCccEEEEcc-----cccc-CCCCCCcc
Q 007106 343 KGGKCIVFTQTKRDADRLAHAMAKS---YNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAAR-GLDVPNVD 413 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~-----~~~~-Gidi~~~~ 413 (618)
...++||.+|++.-+..+++.+.+. +.+..++++....+....+. ...+|+|+|. .+.. .+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3568999999999999999888653 56777788776554433332 2578999995 2222 36677888
Q ss_pred EEEEcCCC
Q 007106 414 LIIHYELP 421 (618)
Q Consensus 414 ~VI~~~~p 421 (618)
+||.-.+.
T Consensus 147 ~iViDEah 154 (207)
T 2gxq_A 147 VAVLDEAD 154 (207)
T ss_dssp EEEEESHH
T ss_pred EEEEEChh
Confidence 88865443
No 256
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=78.12 E-value=8.6 Score=42.70 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=15.3
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
..++++.+|+|+|||..+
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 356999999999999754
No 257
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=77.91 E-value=1.9 Score=44.44 Aligned_cols=44 Identities=18% Similarity=0.339 Sum_probs=31.8
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHH
Q 007106 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (618)
...+++|.++||+|||..+ ..++..+.. .+..++|+=|.-++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~--------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLL--------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHH--------TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHH--------CCCcEEEEeCCCchhH
Confidence 3468999999999999863 444544443 1567888889877754
No 258
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=77.86 E-value=3.8 Score=40.93 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=16.0
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007106 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~ 153 (618)
...++++.+|+|+|||.++
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3467999999999999854
No 259
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=77.13 E-value=17 Score=37.90 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.0
Q ss_pred CEEEEccCCChhHHHHH
Q 007106 138 DMIGRARTGTGKTLAFG 154 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~l 154 (618)
.+++++++|+|||.++.
T Consensus 103 vI~ivG~~GvGKTTl~~ 119 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCS 119 (504)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999997653
No 260
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=76.72 E-value=29 Score=33.87 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=34.4
Q ss_pred CccEEEEchhhhhc-cCCcHHHHHHHHHhCCCCCcEEEEEecCChHHHHHHHHh
Q 007106 245 EVQFVVLDEADQML-SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY 297 (618)
Q Consensus 245 ~~~~vViDEaH~~~-~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~ 297 (618)
..+++++|.+-+.- +......+..+...+.++..++++.+|........+..+
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 45678899887542 222445555566666677778888888776666555544
No 261
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=75.48 E-value=4.6 Score=37.23 Aligned_cols=71 Identities=17% Similarity=0.265 Sum_probs=50.3
Q ss_pred CCeEEEEecchhHHHHHHHHHHc------cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccc-----cc-cCCCCCC
Q 007106 344 GGKCIVFTQTKRDADRLAHAMAK------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-----AA-RGLDVPN 411 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~------~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~-----~~-~Gidi~~ 411 (618)
..++||.+|+++-++.+++.+.+ .+.+..++++....++...+ ...+|+|+|.- +. ..+++.+
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccccc
Confidence 46899999999999998887754 35677788888766554433 25789999962 22 2356667
Q ss_pred ccEEEEcC
Q 007106 412 VDLIIHYE 419 (618)
Q Consensus 412 ~~~VI~~~ 419 (618)
+++||.-.
T Consensus 167 ~~~lViDE 174 (230)
T 2oxc_A 167 IRLFILDE 174 (230)
T ss_dssp CCEEEESS
T ss_pred CCEEEeCC
Confidence 77777643
No 262
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=75.09 E-value=7 Score=42.20 Aligned_cols=69 Identities=17% Similarity=0.106 Sum_probs=48.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vV 250 (618)
..++||+|+++.-++.+++.|.+. .+.+..+++...............+||||| + +....+++. +++||
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~--g~~v~~lhg~~R~~~l~~F~~g~~~VLVaT-----d-v~~rGiDi~-v~~VI 423 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS--GKRVIQLSRKTFDTEYPKTKLTDWDFVVTT-----D-ISEMGANFR-AGRVI 423 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTTHHHHTTHHHHSCCSEEEEC-----G-GGGTTCCCC-CSEEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc--CCcEEEEChHHHHHHHHhhcCCCcEEEEEC-----c-HHHcCcccC-ceEEE
Confidence 457999999999999999999886 467788887533222222223458999999 3 334456664 77775
No 263
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=75.04 E-value=11 Score=41.80 Aligned_cols=73 Identities=18% Similarity=0.304 Sum_probs=54.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHh---------CCCCcEEEEEcCcchhhhhHHhhc---------CCCEEEEChHHHHH
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHES---------APSLDTICVYGGTPISHQMRALDY---------GVDAVVGTPGRVID 234 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~---------~~~~~~~~~~g~~~~~~~~~~l~~---------~~~Ilv~T~~~l~~ 234 (618)
..++||.||++.-+.++++.+.+. ...+.+..++++.+..++...+.. ...|||+| +
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT-----~ 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVIST-----N 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEEC-----T
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeC-----c
Confidence 568999999999999999888752 245678888998887666554432 35799999 3
Q ss_pred HHHhcCCCCCCccEEEE
Q 007106 235 LIKRNALNLSEVQFVVL 251 (618)
Q Consensus 235 ~l~~~~~~l~~~~~vVi 251 (618)
.+ ...+++.++.+||-
T Consensus 378 ia-e~GidIp~v~~VId 393 (773)
T 2xau_A 378 IA-ETSLTIDGIVYVVD 393 (773)
T ss_dssp HH-HHTCCCTTEEEEEE
T ss_pred HH-HhCcCcCCeEEEEe
Confidence 33 34567888888773
No 264
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=74.76 E-value=6 Score=38.54 Aligned_cols=68 Identities=24% Similarity=0.349 Sum_probs=48.5
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcc
Q 007106 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (618)
Q Consensus 172 ~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~ 247 (618)
...++||.|+++..+..+++.+. .+..+++..+...+.+.+. ...+|+|+| +. ....+++.+++
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-----~~-~~~Gid~~~~~ 286 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD------NAIELRGDLPQSVRNRNIDAFREGEYDMLITT-----DV-ASRGLDIPLVE 286 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----HH-HHTTCCCCCBS
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEc-----Cc-cccCCCccCCC
Confidence 35689999999988887766554 4667777776655544332 357999999 33 34467788899
Q ss_pred EEEE
Q 007106 248 FVVL 251 (618)
Q Consensus 248 ~vVi 251 (618)
+||.
T Consensus 287 ~Vi~ 290 (337)
T 2z0m_A 287 KVIN 290 (337)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8885
No 265
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=74.15 E-value=31 Score=31.94 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=50.0
Q ss_pred CCeEEEEecchhHHHHHHHHHHc-----cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccc-----ccc-CCCCCCc
Q 007106 344 GGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-----AAR-GLDVPNV 412 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~-----~~~-Gidi~~~ 412 (618)
..++||.+|+++-+..+++.+.+ .+.+..++++....+....+ ....+|+|+|.- +.. .+++.++
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 35899999999999998887754 24566677776655433222 346789999952 222 3577788
Q ss_pred cEEEEcCCC
Q 007106 413 DLIIHYELP 421 (618)
Q Consensus 413 ~~VI~~~~p 421 (618)
++||.-.+.
T Consensus 176 ~~lViDEah 184 (253)
T 1wrb_A 176 KYIVLDEAD 184 (253)
T ss_dssp CEEEEETHH
T ss_pred CEEEEeCHH
Confidence 888864443
No 266
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=74.12 E-value=3.1 Score=37.91 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=27.6
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEccCCChhHHH
Q 007106 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152 (618)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~ 152 (618)
+...+.-|+.++..+..+.-+.|.+|.|+|||+.
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 3444556778888888888899999999999973
No 267
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=73.95 E-value=8.1 Score=34.60 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=49.8
Q ss_pred CCeEEEEecchhHHHHHHHHHHc------cCCccccccCCCHHHHHHHHHHHhcCCccEEEEcc-----ccccC-CCCCC
Q 007106 344 GGKCIVFTQTKRDADRLAHAMAK------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAARG-LDVPN 411 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~------~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~-----~~~~G-idi~~ 411 (618)
..++||.+|+++-++.+++.+.+ ...+..++++....+.... + ....+|+|+|. .+..+ +++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 45799999999999988887754 3456677888765543222 2 35678999996 22333 56777
Q ss_pred ccEEEEcCC
Q 007106 412 VDLIIHYEL 420 (618)
Q Consensus 412 ~~~VI~~~~ 420 (618)
+++||.-.+
T Consensus 147 ~~~lViDEa 155 (206)
T 1vec_A 147 VQMIVLDEA 155 (206)
T ss_dssp CCEEEEETH
T ss_pred CCEEEEECh
Confidence 888876443
No 268
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=73.78 E-value=3.7 Score=41.91 Aligned_cols=29 Identities=14% Similarity=0.204 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhC--CCCEEEEccCCChhHHH
Q 007106 124 PIQKAVLEPAMQ--GRDMIGRARTGTGKTLA 152 (618)
Q Consensus 124 ~~Q~~~i~~i~~--~~~~ll~~~tGsGKT~~ 152 (618)
+-+..++..++. +.-++|.+|||||||..
T Consensus 153 ~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 153 AHNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 344455555443 23478999999999963
No 269
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=73.31 E-value=20 Score=32.79 Aligned_cols=73 Identities=14% Similarity=0.254 Sum_probs=49.3
Q ss_pred cCCeEEEEecchhHHHHHHHHHHcc-----CCccccccCCCHHHHHHHHHHHhcCCccEEEEccc-----ccc--CCCCC
Q 007106 343 KGGKCIVFTQTKRDADRLAHAMAKS-----YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-----AAR--GLDVP 410 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~-----~~~--Gidi~ 410 (618)
.+.++||.+|+++-+..+++.+.+. +.+..++++.+..+....+ ...+|+|+|.- +.. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 4568999999999999998887652 5677778876654443322 46789999952 222 36677
Q ss_pred CccEEEEcCC
Q 007106 411 NVDLIIHYEL 420 (618)
Q Consensus 411 ~~~~VI~~~~ 420 (618)
++++||.-.+
T Consensus 171 ~~~~lViDEa 180 (236)
T 2pl3_A 171 DLQMLVLDEA 180 (236)
T ss_dssp TCCEEEETTH
T ss_pred cccEEEEeCh
Confidence 7888876444
No 270
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=72.85 E-value=5.2 Score=43.39 Aligned_cols=66 Identities=15% Similarity=0.238 Sum_probs=49.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhhcCCCEEEEChHHHHHHHHhcCCCCCCccEEE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vV 250 (618)
..++||+|+++.-++++++.|++. ++.+..++++.+.... .+...+|||+| +.+... +++. +++||
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~--g~~v~~lHG~l~q~er---~~~~~~VLVAT-----dVaerG-IDId-V~~VI 461 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGL--GINAVAYYRGLDVSVI---PTIGDVVVVAT-----DALMTG-YTGD-FDSVI 461 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECTTSCGGGS---CSSSCEEEEEC-----TTHHHH-CCCC-BSEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhC--CCcEEEecCCCCHHHH---HhCCCcEEEEC-----ChHHcc-CCCC-CcEEE
Confidence 568999999999999999999875 5788889988876543 23446899999 444443 4454 88877
No 271
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=72.78 E-value=29 Score=36.18 Aligned_cols=76 Identities=12% Similarity=0.058 Sum_probs=51.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHh----hcCCCEEEEChHHHHHHHHhcCCCCCCccE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l----~~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~ 248 (618)
+...+|++....-+..+++.+.+.. .++..+++..+...+...+ ....+|+|+|+..+.. .+++.++++
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~~--~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~~ 419 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNEY--DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLHH 419 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTC--SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEEE
T ss_pred CCCeEEEEecHHHHHHHHHHHHHcC--CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCcE
Confidence 3445555555677777888887754 3778888887765544332 2357899999766543 467889999
Q ss_pred EEEchhh
Q 007106 249 VVLDEAD 255 (618)
Q Consensus 249 vViDEaH 255 (618)
||+....
T Consensus 420 vi~~~~~ 426 (510)
T 2oca_A 420 VVLAHGV 426 (510)
T ss_dssp EEESSCC
T ss_pred EEEeCCC
Confidence 9987766
No 272
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=72.37 E-value=5.1 Score=45.25 Aligned_cols=16 Identities=31% Similarity=0.256 Sum_probs=14.2
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
.+++.+|+|+|||.++
T Consensus 590 ~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEBSCSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999755
No 273
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=72.36 E-value=0.76 Score=46.01 Aligned_cols=8 Identities=0% Similarity=-0.234 Sum_probs=3.1
Q ss_pred HHHHHhCC
Q 007106 457 SIERDVGC 464 (618)
Q Consensus 457 ~l~~~l~~ 464 (618)
.|.+.++.
T Consensus 240 ~il~~y~~ 247 (358)
T 2pk2_A 240 EFLQILEK 247 (358)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHHh
Confidence 33344433
No 274
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=71.95 E-value=9.6 Score=41.99 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=53.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCC----------------------------------CcEEEEEcCcchhhhhHHh
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPS----------------------------------LDTICVYGGTPISHQMRAL 218 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~----------------------------------~~~~~~~g~~~~~~~~~~l 218 (618)
+.++||.||++.-+..+++.+.+.... ..+..+|++.+..++....
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 568999999999999999998875432 2477788887766654433
Q ss_pred h----cCCCEEEEChHHHHHHHHhcCCCCCCccEEEE
Q 007106 219 D----YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (618)
Q Consensus 219 ~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vVi 251 (618)
. ....||||| ......+++..+.+||-
T Consensus 332 ~~f~~g~~~vlvaT------~~l~~Gidip~~~~VI~ 362 (715)
T 2va8_A 332 EGFRQRKIKVIVAT------PTLAAGVNLPARTVIIG 362 (715)
T ss_dssp HHHHTTCSCEEEEC------GGGGGSSCCCBSEEEEC
T ss_pred HHHHcCCCeEEEEC------hHHhcccCCCceEEEEe
Confidence 3 357999999 33445677888877664
No 275
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=71.94 E-value=6.2 Score=36.16 Aligned_cols=74 Identities=16% Similarity=0.233 Sum_probs=47.5
Q ss_pred cCCeEEEEecchhHHHHHHHHHHc----cCCccccccCCCHHHHHHHHHHHhcCCccEEEEcc-----cc-ccCCCCCCc
Q 007106 343 KGGKCIVFTQTKRDADRLAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VA-ARGLDVPNV 412 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~-----~~-~~Gidi~~~ 412 (618)
.+.++||.+|+++-++.+++.+.+ .+.+..++++.+..++... +. ...+|+|+|. .+ ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 456899999999999999988865 3566677777655443322 22 3478999995 22 234677888
Q ss_pred cEEEEcCC
Q 007106 413 DLIIHYEL 420 (618)
Q Consensus 413 ~~VI~~~~ 420 (618)
++||.-.+
T Consensus 169 ~~lViDEa 176 (228)
T 3iuy_A 169 TYLVIDEA 176 (228)
T ss_dssp CEEEECCH
T ss_pred eEEEEECH
Confidence 88886444
No 276
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=71.68 E-value=9.8 Score=35.13 Aligned_cols=75 Identities=15% Similarity=0.251 Sum_probs=44.8
Q ss_pred cCCeEEEEecchhHHHHHHHHHHcc-----CCccccccCCCHHHHHHHHHHHhcCCccEEEEcc-----ccccC-CCCCC
Q 007106 343 KGGKCIVFTQTKRDADRLAHAMAKS-----YNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAARG-LDVPN 411 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~-----~~~~G-idi~~ 411 (618)
...++||.+|+++-+..+++.+.+. +.+..++++.... .....+..+..+|+|+|. .+..+ +++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR---NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchH---HHHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 3568999999999999998888542 3455556654432 233455567789999993 33333 66777
Q ss_pred ccEEEEcCC
Q 007106 412 VDLIIHYEL 420 (618)
Q Consensus 412 ~~~VI~~~~ 420 (618)
+++||.-.+
T Consensus 174 ~~~lViDEa 182 (237)
T 3bor_A 174 IKMFVLDEA 182 (237)
T ss_dssp CCEEEEESH
T ss_pred CcEEEECCc
Confidence 888876443
No 277
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=71.34 E-value=17 Score=37.51 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=18.2
Q ss_pred HHhCCCCEEEEccCCChhHHHH
Q 007106 132 PAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 132 ~i~~~~~~ll~~~tGsGKT~~~ 153 (618)
.+.+++.+++.++.|+|||..+
T Consensus 147 pi~kGq~~~i~G~sGvGKTtL~ 168 (473)
T 1sky_E 147 PYIKGGKIGLFGGAGVGKTVLI 168 (473)
T ss_dssp CEETTCEEEEECCSSSCHHHHH
T ss_pred hhccCCEEEEECCCCCCccHHH
Confidence 4456788999999999999754
No 278
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=71.05 E-value=4.8 Score=41.74 Aligned_cols=68 Identities=10% Similarity=0.080 Sum_probs=45.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh-cCCCEEEEChHHHHHHHHhcCCCCCCccEEE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vV 250 (618)
..++||.||++.-++.+++.+.+. .+.+..+++.... .....+. ...+||||| +.+ ...+++.+ ++||
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~--g~~v~~lh~~~R~-~~~~~f~~g~~~iLVaT-----~v~-~~GiDip~-~~VI 258 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA--GKKVIQLNRKSYD-TEYPKCKNGDWDFVITT-----DIS-EMGANFGA-SRVI 258 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT--TCCEEEESTTCCC-CCGGGSSSCCCSEEEES-----SCC----CCCSC-SEEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc--CCcEEecCHHHHH-HHHhhccCCCceEEEEC-----ChH-HhCeecCC-CEEE
Confidence 457999999999999999999886 4677777774322 2222222 347999999 333 33456777 6666
No 279
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=70.58 E-value=5.8 Score=35.95 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHhCC----CCEEEEccCCChhHHHH
Q 007106 108 QDIVAALARRGISKLFPIQKAVLEPAMQG----RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 108 ~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~----~~~ll~~~tGsGKT~~~ 153 (618)
..+.+.|+-.++. +... ...+..++++ +.+++.+|+|+|||..+
T Consensus 28 ~~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 28 RPIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 4566667655544 3333 3344444433 34899999999999755
No 280
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=70.06 E-value=1.5 Score=42.09 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=27.9
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHH-HHHHHHHh--CCCCEEEEccCCChhHHHH
Q 007106 97 EGLDISKLDISQDIVAALARRGISKLFPIQ-KAVLEPAM--QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q-~~~i~~i~--~~~~~ll~~~tGsGKT~~~ 153 (618)
+...|+++.-.+++++.|...-. .|+. .+++..+- -.+.+++.+|+|+|||+.+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 44567788777777777754321 2222 23333321 1244999999999999743
No 281
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=68.99 E-value=3.2 Score=39.25 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=16.5
Q ss_pred hCCCCEEEEccCCChhHHHH
Q 007106 134 MQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 134 ~~~~~~ll~~~tGsGKT~~~ 153 (618)
.....+++.+++|+|||..+
T Consensus 27 ~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 34568999999999999744
No 282
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=68.80 E-value=10 Score=36.46 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.6
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
..++++.+|+|+|||..+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999754
No 283
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=68.62 E-value=8.8 Score=38.43 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=15.5
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
..++++.+|+|+|||.++
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 457999999999999754
No 284
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=68.13 E-value=11 Score=45.52 Aligned_cols=44 Identities=16% Similarity=0.078 Sum_probs=30.9
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHH
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~ 189 (618)
+-+.|.+|.|||||..++..+.+.. + .+..++++.+-.+|-...
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~-~--------~g~~~~~i~~e~~~~~~~ 1475 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQ-R--------EGKTCAFIDAEHALDPIY 1475 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH-H--------TTCCEEEECTTSCCCHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH-h--------cCCeEEEEecCCCCCHHH
Confidence 4489999999999987755544432 2 267899998865555544
No 285
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=67.83 E-value=17 Score=34.13 Aligned_cols=74 Identities=18% Similarity=0.263 Sum_probs=50.4
Q ss_pred cCCeEEEEecchhHHHHHHHHHHcc-----CCccccccCCCHHHHHHHHHHHhcCCccEEEEcc-----ccc--cCCCCC
Q 007106 343 KGGKCIVFTQTKRDADRLAHAMAKS-----YNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAA--RGLDVP 410 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~-----~~~--~Gidi~ 410 (618)
.+.++||.+|+++-++.+++.+.+. ..+..++++....+.... +..+ .+|+|+|+ .+. ..+++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 3568999999999999998888652 345566777665544322 3333 78999994 222 246778
Q ss_pred CccEEEEcCC
Q 007106 411 NVDLIIHYEL 420 (618)
Q Consensus 411 ~~~~VI~~~~ 420 (618)
++.+||.-.+
T Consensus 201 ~l~~lViDEa 210 (262)
T 3ly5_A 201 NLQCLVIDEA 210 (262)
T ss_dssp TCCEEEECSH
T ss_pred cCCEEEEcCh
Confidence 8888886443
No 286
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=67.82 E-value=2.9 Score=42.37 Aligned_cols=71 Identities=10% Similarity=0.183 Sum_probs=46.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCccE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~ 248 (618)
..++||+|+++..+..+++.+.+. .+.+..+++..+...+...++ ...+|||+|. +....+++.++++
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~v~~ 351 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHAR--DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD------LLARGIDVQQVSL 351 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTT--TCCCEEC---CHHHHHHHHHHHHSCC---CEEECS------SCC--CCGGGCSC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhc--CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC------ccccCCCccCCCE
Confidence 457999999999999999999875 467788888877665544332 2478999992 2334466777888
Q ss_pred EEE
Q 007106 249 VVL 251 (618)
Q Consensus 249 vVi 251 (618)
||.
T Consensus 352 Vi~ 354 (414)
T 3eiq_A 352 VIN 354 (414)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 287
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=67.79 E-value=5.5 Score=39.68 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=17.2
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHH
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i 161 (618)
+..++|.+|||||||.. +..++..+
T Consensus 123 ~g~i~I~GptGSGKTTl-L~~l~g~~ 147 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTT-LAAMLDYL 147 (356)
T ss_dssp SEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred CCEEEEECCCCCCHHHH-HHHHHhcc
Confidence 34689999999999963 33344333
No 288
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=67.75 E-value=20 Score=37.68 Aligned_cols=127 Identities=14% Similarity=0.125 Sum_probs=61.3
Q ss_pred HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchh
Q 007106 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212 (618)
Q Consensus 133 i~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~ 212 (618)
+..+.-++|.+++|+|||..+.. ++..+.. .+.+++++++... ..|+...+..+. +. ..
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~-l~g~~~~--------~G~~vi~~~~ee~-~~~l~~~~~~~g--~~---------~~ 336 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSR-FVENACA--------NKERAILFAYEES-RAQLLRNAYSWG--MD---------FE 336 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHH-HHHHHHT--------TTCCEEEEESSSC-HHHHHHHHHTTS--CC---------HH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHH-HHHHHHh--------CCCCEEEEEEeCC-HHHHHHHHHHcC--CC---------HH
Confidence 34456689999999999974432 2222211 1445677765422 235544443321 11 01
Q ss_pred hhhHHhhcCCCEEE-------EChHHHHHHHHhcCCCCCCccEEEEchhhhhccCC-----cHHHHHHHHHhCCC-CCcE
Q 007106 213 HQMRALDYGVDAVV-------GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-----FAEDVEVILERLPQ-NRQS 279 (618)
Q Consensus 213 ~~~~~l~~~~~Ilv-------~T~~~l~~~l~~~~~~l~~~~~vViDEaH~~~~~~-----~~~~~~~il~~l~~-~~~~ 279 (618)
. ....+ .+-+ -+.+...+.+....+ ..+.++||+| -=.-++.. ....+..++..+.. ..-+
T Consensus 337 ~---~~~~g-~~~~~~~~p~~LS~g~~q~~~~a~~l-~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tv 410 (525)
T 1tf7_A 337 E---MERQN-LLKIVCAYPESAGLEDHLQIIKSEIN-DFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITG 410 (525)
T ss_dssp H---HHHTT-SEEECCCCGGGSCHHHHHHHHHHHHH-TTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred H---HHhCC-CEEEEEeccccCCHHHHHHHHHHHHH-hhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEE
Confidence 0 00100 0111 133444433333222 4567899999 54455554 45555555555543 3445
Q ss_pred EEEEecC
Q 007106 280 MMFSATM 286 (618)
Q Consensus 280 l~lSAT~ 286 (618)
|+.|-..
T Consensus 411 ilvsh~~ 417 (525)
T 1tf7_A 411 LFTNTSD 417 (525)
T ss_dssp EEEEECS
T ss_pred EEEECcc
Confidence 5555543
No 289
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=67.68 E-value=4.7 Score=40.75 Aligned_cols=41 Identities=20% Similarity=0.363 Sum_probs=27.3
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHH
Q 007106 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~ 184 (618)
.+.+++|.++||+|||...-. ++..+.. .+.+++|+=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~--------~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYM--------QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHT--------TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHH--------CCCEEEEEeCCcC
Confidence 456899999999999975433 3333221 2567888877644
No 290
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=67.52 E-value=5.4 Score=36.73 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=18.3
Q ss_pred CEEEEccCCChhHHHHHHHHHHHH
Q 007106 138 DMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~l~~~l~~i 161 (618)
++++.++.|+|||..++..+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 589999999999987655544443
No 291
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=67.36 E-value=6.3 Score=41.27 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007106 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 123 ~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~ 153 (618)
...-+.++..+..+.++++.+|+|+|||..+
T Consensus 28 ~~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 28 SHAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 3334455556677889999999999999743
No 292
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=66.47 E-value=5.5 Score=36.33 Aligned_cols=73 Identities=15% Similarity=0.208 Sum_probs=44.8
Q ss_pred cCCeEEEEecchhHHHHHHHHHHc-----cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccc-----c-ccCCCCCC
Q 007106 343 KGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-----A-ARGLDVPN 411 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~-----~-~~Gidi~~ 411 (618)
...++||.+|++.-++.+++.+.+ .+.+..++++.+..++... +. +.+|+|+|.- + ...+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 345899999999999998887754 3556677877655443322 22 3789999952 1 23466777
Q ss_pred ccEEEEcCC
Q 007106 412 VDLIIHYEL 420 (618)
Q Consensus 412 ~~~VI~~~~ 420 (618)
+++||.-.+
T Consensus 156 ~~~iViDEa 164 (224)
T 1qde_A 156 IKMFILDEA 164 (224)
T ss_dssp CCEEEEETH
T ss_pred CcEEEEcCh
Confidence 888886444
No 293
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=66.28 E-value=11 Score=35.76 Aligned_cols=43 Identities=21% Similarity=0.103 Sum_probs=29.3
Q ss_pred HHHHHHHHcCCCCChHHH-HHHHHHHhCCC-----CEEEEccCCChhHHHHH
Q 007106 109 DIVAALARRGISKLFPIQ-KAVLEPAMQGR-----DMIGRARTGTGKTLAFG 154 (618)
Q Consensus 109 ~l~~~l~~~~~~~l~~~Q-~~~i~~i~~~~-----~~ll~~~tGsGKT~~~l 154 (618)
.+.+.|+..++. +.+ ..++..+++++ .+++.+|+|+|||+.+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 577788777766 444 23344555442 38999999999998553
No 294
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=65.06 E-value=8.4 Score=40.43 Aligned_cols=38 Identities=24% Similarity=0.118 Sum_probs=24.3
Q ss_pred HHHHcCCCCChHHHHHHHH-HHhCCCCEEEEccCCChhHHH
Q 007106 113 ALARRGISKLFPIQKAVLE-PAMQGRDMIGRARTGTGKTLA 152 (618)
Q Consensus 113 ~l~~~~~~~l~~~Q~~~i~-~i~~~~~~ll~~~tGsGKT~~ 152 (618)
.|.+.+. +++.+..-+. .+..+..+++.+|||||||..
T Consensus 238 ~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 238 DLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 3444443 2333433333 455677899999999999963
No 295
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=65.01 E-value=7.9 Score=44.79 Aligned_cols=75 Identities=24% Similarity=0.374 Sum_probs=56.3
Q ss_pred cCCeEEEEecchhHHHHHHHHHHc-----cC----CccccccCCCHHHHHHHHHHHhcCCccEEEEccc-cccCCC-CCC
Q 007106 343 KGGKCIVFTQTKRDADRLAHAMAK-----SY----NCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-AARGLD-VPN 411 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-----~~----~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~-~~~Gid-i~~ 411 (618)
.+.++||.+|+++-+..+++.+.+ .+ .+..+||+.+..++.+..+.+.+ .+|+|+|+- +..-+. +.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 467899999999999999887754 23 67789999999888878887777 899999962 222121 557
Q ss_pred ccEEEEcC
Q 007106 412 VDLIIHYE 419 (618)
Q Consensus 412 ~~~VI~~~ 419 (618)
+++||.-.
T Consensus 176 l~~lViDE 183 (1054)
T 1gku_B 176 FDFIFVDD 183 (1054)
T ss_dssp CSEEEESC
T ss_pred CCEEEEeC
Confidence 77777644
No 296
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=64.14 E-value=3.6 Score=40.45 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=18.8
Q ss_pred HHHHhCCCCEEEEccCCChhHHHH
Q 007106 130 LEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 130 i~~i~~~~~~ll~~~tGsGKT~~~ 153 (618)
...+..+.++++.+|+|+|||..+
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCcHHHHH
Confidence 334455789999999999999754
No 297
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=63.85 E-value=4.1 Score=39.57 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=16.1
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007106 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~ 153 (618)
...++++.+++|+|||.++
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4567999999999999754
No 298
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=63.32 E-value=5 Score=39.93 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=21.4
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHHH
Q 007106 128 AVLEPAMQGRD--MIGRARTGTGKTLAFG 154 (618)
Q Consensus 128 ~~i~~i~~~~~--~ll~~~tGsGKT~~~l 154 (618)
.+++.++.+.| ++..+.||||||.+..
T Consensus 95 plv~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 95 DVVSQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 45667778877 7889999999998753
No 299
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=63.31 E-value=14 Score=32.98 Aligned_cols=32 Identities=19% Similarity=0.409 Sum_probs=20.2
Q ss_pred CCEEEEChHHHHHHHHhcCCCCCCccEEEEchhhh
Q 007106 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (618)
Q Consensus 222 ~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEaH~ 256 (618)
.+++-+..+.+...+..- ..++++||||=.-.
T Consensus 55 ~~~~~~~~~~l~~~l~~l---~~~yD~viiD~~~~ 86 (206)
T 4dzz_A 55 FDVFTAASEKDVYGIRKD---LADYDFAIVDGAGS 86 (206)
T ss_dssp SEEEECCSHHHHHTHHHH---TTTSSEEEEECCSS
T ss_pred CcEEecCcHHHHHHHHHh---cCCCCEEEEECCCC
Confidence 456666666666666542 23588999986543
No 300
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=62.56 E-value=4.3 Score=37.05 Aligned_cols=73 Identities=18% Similarity=0.217 Sum_probs=46.6
Q ss_pred CCeEEEEecchhHHHHHHHHHHc---------cCCccccccCCCHHHHHHHHHHHhcCCccEEEEcc-----cccc-CCC
Q 007106 344 GGKCIVFTQTKRDADRLAHAMAK---------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAAR-GLD 408 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~---------~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~-----~~~~-Gid 408 (618)
+.++||.+|+++-++.+++.+.+ .+.+..++++.+..+.. +.+ ....+|+|+|. .+.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 45899999999999988887643 24555667775433221 111 24578999995 2333 356
Q ss_pred CCCccEEEEcCC
Q 007106 409 VPNVDLIIHYEL 420 (618)
Q Consensus 409 i~~~~~VI~~~~ 420 (618)
+..+++||.-.+
T Consensus 148 ~~~~~~lViDEa 159 (219)
T 1q0u_A 148 VHTAHILVVDEA 159 (219)
T ss_dssp GGGCCEEEECSH
T ss_pred cCcceEEEEcCc
Confidence 677777776443
No 301
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=61.91 E-value=39 Score=35.01 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=12.9
Q ss_pred CEEEEccCCChhHHH
Q 007106 138 DMIGRARTGTGKTLA 152 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~ 152 (618)
-+.|.+++|+|||..
T Consensus 295 VI~LVGpNGSGKTTL 309 (503)
T 2yhs_A 295 VILMVGVNGVGKTTT 309 (503)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCcccHHHH
Confidence 378999999999974
No 302
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=61.71 E-value=17 Score=39.55 Aligned_cols=73 Identities=16% Similarity=0.255 Sum_probs=54.3
Q ss_pred EEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhh---hhHHhh---cCCCEEEEChHHHHHHHHhcCCCCCCccEE
Q 007106 176 CLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH---QMRALD---YGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249 (618)
Q Consensus 176 ~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~---~~~~l~---~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~v 249 (618)
.+|+|+++.-++++++.+.+. .+.+..+|++.+... ..+.+. ...+||||| + +....+++ ++++|
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~--g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVAT-----d-i~e~GlDi-~v~~V 393 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR--GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVAT-----D-AIGMGLNL-SIRRI 393 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEEC-----G-GGGSSCCC-CBSEE
T ss_pred CEEEEcCHHHHHHHHHHHHhc--CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeC-----c-HHHCCcCc-CccEE
Confidence 467799999999999999875 578899999988763 333444 337999999 3 44456778 89999
Q ss_pred EEchhhhh
Q 007106 250 VLDEADQM 257 (618)
Q Consensus 250 ViDEaH~~ 257 (618)
|.-...++
T Consensus 394 I~~~~~k~ 401 (677)
T 3rc3_A 394 IFYSLIKP 401 (677)
T ss_dssp EESCSBC-
T ss_pred EECCcccc
Confidence 98777653
No 303
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=61.24 E-value=20 Score=38.17 Aligned_cols=17 Identities=18% Similarity=0.149 Sum_probs=14.4
Q ss_pred CEEEEccCCChhHHHHH
Q 007106 138 DMIGRARTGTGKTLAFG 154 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~l 154 (618)
-++|.|+.|.|||..+.
T Consensus 149 ~v~I~G~~GiGKTtLa~ 165 (591)
T 1z6t_A 149 WVTIHGMAGCGKSVLAA 165 (591)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 48899999999997553
No 304
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=60.44 E-value=5.1 Score=35.93 Aligned_cols=19 Identities=21% Similarity=0.051 Sum_probs=15.9
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007106 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~ 153 (618)
.++.+++.+++|||||.++
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4567999999999999854
No 305
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=60.30 E-value=31 Score=32.59 Aligned_cols=92 Identities=12% Similarity=0.213 Sum_probs=58.8
Q ss_pred cCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh---c
Q 007106 144 RTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD---Y 220 (618)
Q Consensus 144 ~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~---~ 220 (618)
..-++|... +.-++..+.. .+.++||.|.++..+..+.+.+.+.+ ++.+..++|..+..++...+. .
T Consensus 92 ~~~s~K~~~-L~~ll~~~~~--------~~~kvlIFs~~~~~~~~l~~~L~~~~-g~~~~~l~G~~~~~~R~~~i~~F~~ 161 (271)
T 1z5z_A 92 VRRSGKMIR-TMEIIEEALD--------EGDKIAIFTQFVDMGKIIRNIIEKEL-NTEVPFLYGELSKKERDDIISKFQN 161 (271)
T ss_dssp STTCHHHHH-HHHHHHHHHH--------TTCCEEEEESCHHHHHHHHHHHHHHH-CSCCCEECTTSCHHHHHHHHHHHHH
T ss_pred cccCHHHHH-HHHHHHHHHh--------CCCeEEEEeccHHHHHHHHHHHHHhc-CCcEEEEECCCCHHHHHHHHHHhcC
Confidence 345788753 4444444432 25689999999999998888887632 356777888877655544332 2
Q ss_pred --CCC-EEEEChHHHHHHHHhcCCCCCCccEEEE
Q 007106 221 --GVD-AVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (618)
Q Consensus 221 --~~~-Ilv~T~~~l~~~l~~~~~~l~~~~~vVi 251 (618)
.+. ++++| ..-...+++...+.||+
T Consensus 162 ~~~~~v~L~st------~~~g~Glnl~~a~~VI~ 189 (271)
T 1z5z_A 162 NPSVKFIVLSV------KAGGFGINLTSANRVIH 189 (271)
T ss_dssp CTTCCEEEEEC------CTTCCCCCCTTCSEEEE
T ss_pred CCCCCEEEEeh------hhhcCCcCcccCCEEEE
Confidence 345 56666 22334566777887774
No 306
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=60.29 E-value=1.8 Score=45.16 Aligned_cols=70 Identities=13% Similarity=0.243 Sum_probs=0.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCccE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~ 248 (618)
..++||+||++.-+..+++.+.+. ...+..++++.+...+...+. ...+||||| + +....+++.++++
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~--~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T-----~-~~~~GlDip~v~~ 404 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE--GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-----N-VCARGIDVEQVSV 404 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC--CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEc-----c-ccccCCccccCCE
Confidence 457999999999999999888775 356777788776555443332 247899999 3 3334566778888
Q ss_pred EE
Q 007106 249 VV 250 (618)
Q Consensus 249 vV 250 (618)
||
T Consensus 405 VI 406 (479)
T 3fmp_B 405 VI 406 (479)
T ss_dssp --
T ss_pred EE
Confidence 87
No 307
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=60.17 E-value=15 Score=41.08 Aligned_cols=73 Identities=18% Similarity=0.276 Sum_probs=37.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhC--CCCcE--------EEEEcCcchhhhhHH---hhc--CCCEEEEChHHHHHHHH
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESA--PSLDT--------ICVYGGTPISHQMRA---LDY--GVDAVVGTPGRVIDLIK 237 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~--~~~~~--------~~~~g~~~~~~~~~~---l~~--~~~Ilv~T~~~l~~~l~ 237 (618)
+.++||.|+++..+..+++.+.+.. ..+++ ..++++.+..++... +.. .++|||+| + +.
T Consensus 631 ~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT-----~-~~ 704 (797)
T 4a2q_A 631 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIAT-----S-VA 704 (797)
T ss_dssp SCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEE-----C-C-
T ss_pred CCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEc-----C-ch
Confidence 5689999999999999999997631 12332 233444444433332 223 47899999 2 33
Q ss_pred hcCCCCCCccEEEE
Q 007106 238 RNALNLSEVQFVVL 251 (618)
Q Consensus 238 ~~~~~l~~~~~vVi 251 (618)
...+++.++++||.
T Consensus 705 ~~GIDlp~v~~VI~ 718 (797)
T 4a2q_A 705 DEGIDIVQCNLVVL 718 (797)
T ss_dssp ------CCCSEEEE
T ss_pred hcCCCchhCCEEEE
Confidence 34567888998884
No 308
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=59.95 E-value=6.4 Score=38.57 Aligned_cols=27 Identities=19% Similarity=0.458 Sum_probs=20.9
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHHH
Q 007106 128 AVLEPAMQGRD--MIGRARTGTGKTLAFG 154 (618)
Q Consensus 128 ~~i~~i~~~~~--~ll~~~tGsGKT~~~l 154 (618)
..++.++.+.+ ++..+.||||||.+..
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 68 KIVKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred hhHHHHhCCCeEEEEEECCCCCCCceEec
Confidence 34556677776 7889999999998753
No 309
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=59.92 E-value=17 Score=36.22 Aligned_cols=73 Identities=15% Similarity=0.196 Sum_probs=51.0
Q ss_pred cCCeEEEEecchhHHHHHHHHHHc-----cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccc-----cc-cCCCCCC
Q 007106 343 KGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-----AA-RGLDVPN 411 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~-----~~-~Gidi~~ 411 (618)
...++||.||++.-++.+++.+.+ .+.+..++++....+....+. ..+|+|+|.- +. ..+++.+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 356899999999999988887754 356777888887766544443 4679999942 22 2355667
Q ss_pred ccEEEEcCC
Q 007106 412 VDLIIHYEL 420 (618)
Q Consensus 412 ~~~VI~~~~ 420 (618)
+++||.-.+
T Consensus 163 ~~~vIiDEa 171 (394)
T 1fuu_A 163 IKMFILDEA 171 (394)
T ss_dssp CCEEEEETH
T ss_pred CcEEEEECh
Confidence 788776443
No 310
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=59.42 E-value=5 Score=47.67 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=15.4
Q ss_pred hCCCCEEEEccCCChhHH
Q 007106 134 MQGRDMIGRARTGTGKTL 151 (618)
Q Consensus 134 ~~~~~~ll~~~tGsGKT~ 151 (618)
..++.+-|+++||||||.
T Consensus 1103 ~~Ge~vaIVG~SGsGKST 1120 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKST 1120 (1321)
T ss_dssp CTTCEEEEECSTTSSTTS
T ss_pred CCCCEEEEECCCCChHHH
Confidence 356778999999999997
No 311
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=59.12 E-value=5.3 Score=35.05 Aligned_cols=20 Identities=25% Similarity=0.200 Sum_probs=16.5
Q ss_pred hCCCCEEEEccCCChhHHHH
Q 007106 134 MQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 134 ~~~~~~ll~~~tGsGKT~~~ 153 (618)
...+.+++.+++|||||.++
T Consensus 9 ~~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHH
Confidence 34567999999999999854
No 312
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=58.91 E-value=4.7 Score=44.30 Aligned_cols=72 Identities=14% Similarity=0.257 Sum_probs=49.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHh--C--CCCcEEEEEcC--------cchhhhhHHhh----cCCCEEEEChHHHHHHH
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHES--A--PSLDTICVYGG--------TPISHQMRALD----YGVDAVVGTPGRVIDLI 236 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~--~--~~~~~~~~~g~--------~~~~~~~~~l~----~~~~Ilv~T~~~l~~~l 236 (618)
..++||.|+++..+..+++.|.+. + .++.+..+++. .+..++.+.+. ...+|||+| .+
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT------~~ 473 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIAT------TV 473 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEE------CS
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEc------cc
Confidence 568999999999999999999864 1 14667778887 55555544333 247899999 33
Q ss_pred HhcCCCCCCccEEE
Q 007106 237 KRNALNLSEVQFVV 250 (618)
Q Consensus 237 ~~~~~~l~~~~~vV 250 (618)
....+++.++++||
T Consensus 474 ~~~GIDip~v~~VI 487 (699)
T 4gl2_A 474 AEEGLDIKECNIVI 487 (699)
T ss_dssp CCTTSCCCSCCCCE
T ss_pred cccCCccccCCEEE
Confidence 44567788999888
No 313
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=58.89 E-value=6 Score=39.35 Aligned_cols=26 Identities=31% Similarity=0.583 Sum_probs=20.7
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007106 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~ll~~~tGsGKT~~~ 153 (618)
.+++.++.+.+ ++..+.||||||.+.
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceEe
Confidence 45666778877 678999999999875
No 314
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=58.88 E-value=21 Score=37.60 Aligned_cols=74 Identities=14% Similarity=0.204 Sum_probs=48.3
Q ss_pred CCeEEEEecchhHHHHHHHHHHc-----cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccc-----cccC-C-CCCC
Q 007106 344 GGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-----AARG-L-DVPN 411 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~-----~~~G-i-di~~ 411 (618)
..++||++|++.-+..+++.+.+ .+.+..+||+.+..++...+. ...+|+|+|.- +..+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 67899999999999888887754 477888999886555432222 13679999952 2233 4 6777
Q ss_pred ccEEEEcCCC
Q 007106 412 VDLIIHYELP 421 (618)
Q Consensus 412 ~~~VI~~~~p 421 (618)
+++||.-.+.
T Consensus 131 ~~~vViDEah 140 (556)
T 4a2p_A 131 FTLMIFDECH 140 (556)
T ss_dssp CSEEEEETGG
T ss_pred CCEEEEECCc
Confidence 8888865443
No 315
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=58.70 E-value=6.7 Score=38.81 Aligned_cols=27 Identities=22% Similarity=0.546 Sum_probs=22.0
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHHH
Q 007106 128 AVLEPAMQGRD--MIGRARTGTGKTLAFG 154 (618)
Q Consensus 128 ~~i~~i~~~~~--~ll~~~tGsGKT~~~l 154 (618)
..++.++.+.+ ++..+.||||||.+.+
T Consensus 75 ~lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 75 QLVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 36777888877 6789999999998763
No 316
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=58.66 E-value=5.4 Score=37.07 Aligned_cols=75 Identities=17% Similarity=0.380 Sum_probs=47.9
Q ss_pred CCeEEEEecchhHHHHHHHHHHcc-----CCccccccCCCHHHHHHHHHHHhcCCccEEEEcc-----cccc---CCCCC
Q 007106 344 GGKCIVFTQTKRDADRLAHAMAKS-----YNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAAR---GLDVP 410 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~-----~~~~---Gidi~ 410 (618)
+.++||.+|+++-+..+++.+.+. +.+..++++..... ..........+|+|+|. .+.. .+++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 457999999999999999888652 44555554422111 11122345678999994 2222 47788
Q ss_pred CccEEEEcCCC
Q 007106 411 NVDLIIHYELP 421 (618)
Q Consensus 411 ~~~~VI~~~~p 421 (618)
++.+||.-.+.
T Consensus 175 ~~~~lViDEah 185 (245)
T 3dkp_A 175 SVEWLVVDESD 185 (245)
T ss_dssp TCCEEEESSHH
T ss_pred cCcEEEEeChH
Confidence 88888875443
No 317
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=58.56 E-value=5.2 Score=39.35 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=14.4
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
+.++|.+|||+|||..+
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999755
No 318
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=58.49 E-value=6.1 Score=39.13 Aligned_cols=26 Identities=27% Similarity=0.604 Sum_probs=20.4
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007106 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~ll~~~tGsGKT~~~ 153 (618)
..++.++.+.+ ++..+.||||||.+.
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 68 PIIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHcCCccceeeecCCCCCCCeEE
Confidence 34556677776 778999999999876
No 319
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=58.34 E-value=6.2 Score=39.18 Aligned_cols=26 Identities=19% Similarity=0.517 Sum_probs=20.3
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007106 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~ll~~~tGsGKT~~~ 153 (618)
..++.++.+.+ ++..+.||||||.+.
T Consensus 71 plv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 71 PTVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhCCCcceEEEECCCCCCcceEe
Confidence 34556677776 788999999999875
No 320
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=58.22 E-value=6.7 Score=38.88 Aligned_cols=26 Identities=23% Similarity=0.598 Sum_probs=21.7
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007106 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~ll~~~tGsGKT~~~ 153 (618)
..+..++.+.+ ++..+.||||||.+.
T Consensus 76 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 76 QLVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 36778888877 678999999999876
No 321
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=58.18 E-value=6.2 Score=39.18 Aligned_cols=26 Identities=27% Similarity=0.613 Sum_probs=21.1
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007106 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~ll~~~tGsGKT~~~ 153 (618)
.+++.++.+.+ ++..+.||||||.+.
T Consensus 83 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 83 NILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 45667778877 678999999999876
No 322
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=58.11 E-value=6.7 Score=39.69 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=20.2
Q ss_pred HHHHHhCCCC--EEEEccCCChhHHHHH
Q 007106 129 VLEPAMQGRD--MIGRARTGTGKTLAFG 154 (618)
Q Consensus 129 ~i~~i~~~~~--~ll~~~tGsGKT~~~l 154 (618)
.++.++.+.+ ++..+.||||||.+..
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 4556677766 7789999999998763
No 323
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=57.97 E-value=5.7 Score=35.77 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=14.7
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
++-+++.+|||+|||..+
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 345899999999999754
No 324
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=57.86 E-value=6.4 Score=39.28 Aligned_cols=26 Identities=27% Similarity=0.594 Sum_probs=20.6
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007106 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~ll~~~tGsGKT~~~ 153 (618)
..++.++.+.+ ++..+.||||||.+.
T Consensus 80 plv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 80 EMLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 45566777876 678999999999875
No 325
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=57.83 E-value=2.4 Score=40.26 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=15.1
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
.+.+++.+|+|+|||..+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 356999999999999754
No 326
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=57.74 E-value=6.3 Score=38.92 Aligned_cols=25 Identities=24% Similarity=0.557 Sum_probs=19.6
Q ss_pred HHHHHhCCCC--EEEEccCCChhHHHH
Q 007106 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 129 ~i~~i~~~~~--~ll~~~tGsGKT~~~ 153 (618)
.++.++.+.+ ++..+.||||||.+.
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 4455667766 688999999999875
No 327
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=57.71 E-value=9.6 Score=40.80 Aligned_cols=39 Identities=23% Similarity=0.454 Sum_probs=24.6
Q ss_pred CCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEE
Q 007106 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~ 281 (618)
+.+-+++|+||.-.-+|......+.+.+..+..+.-+|+
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~ 534 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLV 534 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 455678888888877766556666666666544333333
No 328
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=57.57 E-value=7.3 Score=38.51 Aligned_cols=26 Identities=31% Similarity=0.577 Sum_probs=20.3
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007106 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~ll~~~tGsGKT~~~ 153 (618)
..++.++.+.+ ++..+.||||||.+.
T Consensus 74 plv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 74 PLLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHhhcCeeEEEecccCCCceEee
Confidence 34556677776 678999999999875
No 329
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=57.54 E-value=7.4 Score=38.54 Aligned_cols=25 Identities=24% Similarity=0.607 Sum_probs=19.8
Q ss_pred HHHHHhCCCC--EEEEccCCChhHHHH
Q 007106 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 129 ~i~~i~~~~~--~ll~~~tGsGKT~~~ 153 (618)
.++.++.+.+ ++..+.||||||.+.
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 4455677776 788999999999875
No 330
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=57.54 E-value=7.2 Score=38.94 Aligned_cols=26 Identities=31% Similarity=0.622 Sum_probs=20.3
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007106 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~ll~~~tGsGKT~~~ 153 (618)
..++.++.+.+ ++..+.||||||.+.
T Consensus 92 plv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 92 PLVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 34556677776 678999999999875
No 331
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=57.53 E-value=4.8 Score=35.15 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=14.4
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
+-+++.+++|||||.++
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999854
No 332
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=57.53 E-value=7.4 Score=38.19 Aligned_cols=26 Identities=27% Similarity=0.567 Sum_probs=21.2
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007106 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~ll~~~tGsGKT~~~ 153 (618)
..+..++.+.+ ++..+.||||||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35667778877 678999999999876
No 333
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=57.20 E-value=6 Score=39.37 Aligned_cols=26 Identities=31% Similarity=0.648 Sum_probs=20.7
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007106 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~ll~~~tGsGKT~~~ 153 (618)
..++.++.+.+ ++..+.||||||.+.
T Consensus 79 plv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 79 PILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HhHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 45666777876 788999999999875
No 334
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=57.04 E-value=22 Score=37.30 Aligned_cols=73 Identities=16% Similarity=0.294 Sum_probs=42.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhC--CCCcEEEEE--------cCcchhhhhHH---hhc--CCCEEEEChHHHHHHHH
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVY--------GGTPISHQMRA---LDY--GVDAVVGTPGRVIDLIK 237 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~--~~~~~~~~~--------g~~~~~~~~~~---l~~--~~~Ilv~T~~~l~~~l~ 237 (618)
..++||.|+++..+..+++.|.+.. ..+.+..++ ++.+..++... +.. ..+||||| + +.
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT-----~-~~ 462 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIAT-----S-VA 462 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEEC-----C-CT
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEc-----c-hh
Confidence 5689999999999999999998742 123343333 34443333322 223 47899999 2 33
Q ss_pred hcCCCCCCccEEEE
Q 007106 238 RNALNLSEVQFVVL 251 (618)
Q Consensus 238 ~~~~~l~~~~~vVi 251 (618)
...+++.++++||.
T Consensus 463 ~~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 463 DEGIDIAECNLVIL 476 (555)
T ss_dssp TCCEETTSCSEEEE
T ss_pred hcCCccccCCEEEE
Confidence 44567888888883
No 335
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=56.98 E-value=7 Score=39.01 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=17.4
Q ss_pred HHhCCCCEEEEccCCChhHH
Q 007106 132 PAMQGRDMIGRARTGTGKTL 151 (618)
Q Consensus 132 ~i~~~~~~ll~~~tGsGKT~ 151 (618)
.+..+..++|.++||||||.
T Consensus 171 ~i~~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTT 190 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHH
T ss_pred HHhcCCEEEEECCCCCCHHH
Confidence 45577889999999999997
No 336
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=56.81 E-value=7.6 Score=38.56 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=19.9
Q ss_pred HHHHHhCCCC--EEEEccCCChhHHHH
Q 007106 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 129 ~i~~i~~~~~--~ll~~~tGsGKT~~~ 153 (618)
+++.++.+.+ ++..+.||||||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 4556677776 788999999999875
No 337
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=56.69 E-value=19 Score=38.50 Aligned_cols=77 Identities=9% Similarity=0.060 Sum_probs=49.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCC------CcEEEEEcCcch--hhhhHHhhcC-CC---EEEEChHHHHHHHHhcC
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPS------LDTICVYGGTPI--SHQMRALDYG-VD---AVVGTPGRVIDLIKRNA 240 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~------~~~~~~~g~~~~--~~~~~~l~~~-~~---Ilv~T~~~l~~~l~~~~ 240 (618)
..++||+|+++.-|..+++.|.+..+. ..+..+++..+. ....+.+..+ .+ |+|+| .+....
T Consensus 439 ~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt------~~l~~G 512 (590)
T 3h1t_A 439 FAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTS------QLLTTG 512 (590)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEES------STTTTT
T ss_pred CccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEEC------ChhhcC
Confidence 578999999999999999999876532 124555665543 1112223332 23 77777 233445
Q ss_pred CCCCCccEEEEchhh
Q 007106 241 LNLSEVQFVVLDEAD 255 (618)
Q Consensus 241 ~~l~~~~~vViDEaH 255 (618)
+++.++++||++..-
T Consensus 513 iDip~v~~Vi~~~~~ 527 (590)
T 3h1t_A 513 VDAPTCKNVVLARVV 527 (590)
T ss_dssp CCCTTEEEEEEESCC
T ss_pred ccchheeEEEEEecC
Confidence 778899999986553
No 338
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=56.56 E-value=8 Score=39.14 Aligned_cols=26 Identities=23% Similarity=0.570 Sum_probs=21.6
Q ss_pred HHHHHhCCCC--EEEEccCCChhHHHHH
Q 007106 129 VLEPAMQGRD--MIGRARTGTGKTLAFG 154 (618)
Q Consensus 129 ~i~~i~~~~~--~ll~~~tGsGKT~~~l 154 (618)
.+..++.+.+ ++..+.||||||.+.+
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 6777888877 6789999999999863
No 339
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=56.51 E-value=13 Score=40.70 Aligned_cols=73 Identities=19% Similarity=0.138 Sum_probs=50.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCC----------------------------CcEEEEEcCcchhhhhHHhh----c
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPS----------------------------LDTICVYGGTPISHQMRALD----Y 220 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~----------------------------~~~~~~~g~~~~~~~~~~l~----~ 220 (618)
+.++||.||++.-+..+++.+.+.+.. ..+..++++.+..++..... .
T Consensus 242 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g 321 (702)
T 2p6r_A 242 NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRG 321 (702)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCC
Confidence 567999999999999988888754211 24667788877665544332 3
Q ss_pred CCCEEEEChHHHHHHHHhcCCCCCCccEEEE
Q 007106 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (618)
Q Consensus 221 ~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vVi 251 (618)
...|||+| ......+++..+.+||-
T Consensus 322 ~~~vlvaT------~~l~~Gidip~~~~VI~ 346 (702)
T 2p6r_A 322 NIKVVVAT------PTLAAGVNLPARRVIVR 346 (702)
T ss_dssp SCCEEEEC------STTTSSSCCCBSEEEEC
T ss_pred CCeEEEEC------cHHhccCCCCceEEEEc
Confidence 47999999 23445667878777663
No 340
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=56.41 E-value=7.9 Score=38.59 Aligned_cols=26 Identities=19% Similarity=0.464 Sum_probs=20.3
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007106 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~ll~~~tGsGKT~~~ 153 (618)
..++.++.+.+ ++..+.||||||.+.
T Consensus 75 plv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 75 SIVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHHhCCCceEEEeecCCCCCCceEE
Confidence 34556677776 678999999999875
No 341
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=56.33 E-value=5.6 Score=37.92 Aligned_cols=54 Identities=11% Similarity=0.027 Sum_probs=31.1
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHh--CCCCEEEEccCCChhHHHH
Q 007106 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~--~~~~~ll~~~tGsGKT~~~ 153 (618)
+...|+++.-.+++.+.++..-.. + -...++..+- -.+.+++.+|+|+|||..+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~-~--~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF-L--KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH-H--HCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH-H--HCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 456677777777777666542110 0 0112233221 1234999999999999743
No 342
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=56.29 E-value=3.5 Score=43.40 Aligned_cols=71 Identities=13% Similarity=0.271 Sum_probs=45.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhH---Hhh-cCCCEEEEChHHHHHHHHhcCCCCCCccE
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR---ALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~-~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~ 248 (618)
..++||+|+++..+..+++.+.+. ...+.+++++.....+.. .+. ...+|||+| + +....+++.++++
T Consensus 357 ~~~~LVF~~s~~~a~~l~~~L~~~--~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT-----~-~l~~GiDip~v~~ 428 (508)
T 3fho_A 357 IGQSIIFCKKKDTAEEIARRMTAD--GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTT-----N-VIARGIDVSQVNL 428 (508)
T ss_dssp CCCEEEBCSSTTTTTHHHHHHTTT--TCCCCEEC-----CTTGGGTHHHHSSSCCCCEEC-----C------CCCTTCCE
T ss_pred CCcEEEEECCHHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeC-----C-hhhcCCCccCCCE
Confidence 468999999999999999888764 456777777766544332 222 347899999 3 3344577888999
Q ss_pred EEE
Q 007106 249 VVL 251 (618)
Q Consensus 249 vVi 251 (618)
||.
T Consensus 429 VI~ 431 (508)
T 3fho_A 429 VVN 431 (508)
T ss_dssp EEC
T ss_pred EEE
Confidence 884
No 343
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=56.27 E-value=5 Score=34.73 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=13.8
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
-+++.+++|||||.++
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 344
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=56.12 E-value=6.3 Score=34.68 Aligned_cols=19 Identities=21% Similarity=0.055 Sum_probs=15.5
Q ss_pred CCCEEEEccCCChhHHHHH
Q 007106 136 GRDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l 154 (618)
.+.+++.+++|||||.++-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3468999999999998553
No 345
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=56.07 E-value=5.5 Score=37.74 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=16.1
Q ss_pred HhCCCCEEEEccCCChhHHH
Q 007106 133 AMQGRDMIGRARTGTGKTLA 152 (618)
Q Consensus 133 i~~~~~~ll~~~tGsGKT~~ 152 (618)
+..+.-+++.+|||||||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 34556689999999999974
No 346
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=56.01 E-value=6.7 Score=34.50 Aligned_cols=18 Identities=11% Similarity=0.235 Sum_probs=14.8
Q ss_pred CCCCEEEEccCCChhHHH
Q 007106 135 QGRDMIGRARTGTGKTLA 152 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~ 152 (618)
.++-++|.+|+|+|||..
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 345688999999999973
No 347
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=55.83 E-value=6.3 Score=39.44 Aligned_cols=26 Identities=31% Similarity=0.592 Sum_probs=20.2
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007106 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~ll~~~tGsGKT~~~ 153 (618)
..++.++.+.+ ++..+.||||||.+.
T Consensus 91 plv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 91 PLIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhCCceEEEEeecCCCCCcceec
Confidence 34556677776 788999999999875
No 348
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=54.94 E-value=4.2 Score=36.08 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=15.5
Q ss_pred hCCCCEEEEccCCChhHHH
Q 007106 134 MQGRDMIGRARTGTGKTLA 152 (618)
Q Consensus 134 ~~~~~~ll~~~tGsGKT~~ 152 (618)
..+.-+++.+++|||||..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CTTEEEEEEECTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3455689999999999974
No 349
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=54.81 E-value=5.8 Score=35.05 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=15.4
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
.+.+++.+++|||||.++
T Consensus 10 ~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 10 GINILITGTPGTGKTSMA 27 (184)
T ss_dssp SCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 456999999999999854
No 350
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=54.81 E-value=18 Score=39.73 Aligned_cols=72 Identities=17% Similarity=0.154 Sum_probs=49.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCC-------------------------------CcEEEEEcCcchhhhhHHhh--
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPS-------------------------------LDTICVYGGTPISHQMRALD-- 219 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~-------------------------------~~~~~~~g~~~~~~~~~~l~-- 219 (618)
+.++||.||++.-+..+++.+.+.... ..+..+|++.+..++.....
T Consensus 237 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 316 (720)
T 2zj8_A 237 KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316 (720)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 568999999999999988888754211 24777888877666543322
Q ss_pred --cCCCEEEEChHHHHHHHHhcCCCCCCccEEE
Q 007106 220 --YGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 220 --~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vV 250 (618)
....||||| + .....+++..+.+||
T Consensus 317 ~~g~~~vlvaT-----~-~l~~Gvdip~~~~VI 343 (720)
T 2zj8_A 317 RKGIIKAVVAT-----P-TLSAGINTPAFRVII 343 (720)
T ss_dssp HTTSSCEEEEC-----S-TTGGGCCCCBSEEEE
T ss_pred HCCCCeEEEEC-----c-HhhccCCCCceEEEE
Confidence 347999999 2 333456677777655
No 351
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=54.75 E-value=7.6 Score=39.82 Aligned_cols=26 Identities=23% Similarity=0.542 Sum_probs=20.3
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007106 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~ll~~~tGsGKT~~~ 153 (618)
.+++.++.+.+ ++..+.||||||.+.
T Consensus 127 plv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 127 EFLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred hHHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 34555677776 788999999999876
No 352
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=54.64 E-value=8 Score=38.82 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=20.3
Q ss_pred HHHHHhCCCC--EEEEccCCChhHHHHH
Q 007106 129 VLEPAMQGRD--MIGRARTGTGKTLAFG 154 (618)
Q Consensus 129 ~i~~i~~~~~--~ll~~~tGsGKT~~~l 154 (618)
.++.++.+.+ ++..+.||||||.+..
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 4556677766 7889999999998764
No 353
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=54.27 E-value=8 Score=34.85 Aligned_cols=18 Identities=28% Similarity=0.266 Sum_probs=14.8
Q ss_pred CEEEEccCCChhHHHHHH
Q 007106 138 DMIGRARTGTGKTLAFGI 155 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~l~ 155 (618)
-.++.+++|||||+.++.
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 478999999999986543
No 354
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=54.12 E-value=13 Score=38.30 Aligned_cols=18 Identities=39% Similarity=0.497 Sum_probs=15.5
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
.+++|+.+|+|+|||..+
T Consensus 63 ~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 357999999999999765
No 355
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=53.67 E-value=7 Score=37.97 Aligned_cols=16 Identities=25% Similarity=0.021 Sum_probs=13.6
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
-++|.+|||+|||..+
T Consensus 5 ~i~i~GptgsGKt~la 20 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCcCCHHHHH
Confidence 4788999999999754
No 356
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=53.55 E-value=6 Score=34.89 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=15.0
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
++.+++.+++|||||.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999854
No 357
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=53.25 E-value=7.2 Score=36.64 Aligned_cols=16 Identities=25% Similarity=-0.037 Sum_probs=13.5
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
-++|.+++|||||..+
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3789999999999754
No 358
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=53.24 E-value=6.2 Score=35.55 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=16.6
Q ss_pred HhCCCCEEEEccCCChhHHHH
Q 007106 133 AMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 133 i~~~~~~ll~~~tGsGKT~~~ 153 (618)
+..++-+++.+++|||||..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 345567999999999999743
No 359
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=53.14 E-value=7.1 Score=39.15 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=15.5
Q ss_pred hCCCCEEEEccCCChhHHH
Q 007106 134 MQGRDMIGRARTGTGKTLA 152 (618)
Q Consensus 134 ~~~~~~ll~~~tGsGKT~~ 152 (618)
..+..++|.+|||||||..
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3455689999999999964
No 360
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=53.11 E-value=7.3 Score=37.79 Aligned_cols=16 Identities=25% Similarity=0.185 Sum_probs=13.5
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
-++|.+|||+|||..+
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3788999999999754
No 361
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=52.81 E-value=7 Score=38.99 Aligned_cols=25 Identities=28% Similarity=0.644 Sum_probs=20.5
Q ss_pred HHHHHhCCCC--EEEEccCCChhHHHH
Q 007106 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 129 ~i~~i~~~~~--~ll~~~tGsGKT~~~ 153 (618)
.+..++.+.+ ++..+.||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5667778876 678999999999876
No 362
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=52.80 E-value=8.3 Score=38.58 Aligned_cols=25 Identities=28% Similarity=0.630 Sum_probs=20.8
Q ss_pred HHHHHhCCCC--EEEEccCCChhHHHH
Q 007106 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 129 ~i~~i~~~~~--~ll~~~tGsGKT~~~ 153 (618)
.+..++.+.+ ++..+.||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 5677788877 678999999999876
No 363
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=51.97 E-value=12 Score=42.80 Aligned_cols=76 Identities=17% Similarity=0.181 Sum_probs=57.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHh---hcC---CCEEEEChHHHHHHHHhcCCCCCCc
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DYG---VDAVVGTPGRVIDLIKRNALNLSEV 246 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l---~~~---~~Ilv~T~~~l~~~l~~~~~~l~~~ 246 (618)
+.++||+|+++..+..+.+.+.+.. ++++..+++..+..++...+ ..+ ++|+|+| .+-...+++.++
T Consensus 503 ~~k~iVF~~~~~~~~~l~~~L~~~~-g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT------~v~~~GlDl~~~ 575 (968)
T 3dmq_A 503 SQKVLVICAKAATALQLEQVLRERE-GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS------EIGSEGRNFQFA 575 (968)
T ss_dssp SSCCCEECSSTHHHHHHHHHHHTTT-CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS------CCTTCSSCCTTC
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec------chhhcCCCcccC
Confidence 5689999999999999999998543 57888999988766554433 232 8999999 233456788899
Q ss_pred cEEEEchhh
Q 007106 247 QFVVLDEAD 255 (618)
Q Consensus 247 ~~vViDEaH 255 (618)
++||+-+..
T Consensus 576 ~~VI~~d~p 584 (968)
T 3dmq_A 576 SHMVMFDLP 584 (968)
T ss_dssp CEEECSSCC
T ss_pred cEEEEecCC
Confidence 999975555
No 364
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=51.96 E-value=12 Score=39.25 Aligned_cols=24 Identities=13% Similarity=0.266 Sum_probs=17.7
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHH
Q 007106 135 QGRDMIGRARTGTGKTLAFGIPILD 159 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~l~~~l~ 159 (618)
+..+++|.+.||||||.+. ..++.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L-~~li~ 189 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGV-NAMIL 189 (512)
T ss_dssp GSCSEEEECCTTSSHHHHH-HHHHH
T ss_pred cCceEEEECCCCCCHHHHH-HHHHH
Confidence 3467999999999999643 44443
No 365
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=51.93 E-value=6.7 Score=38.58 Aligned_cols=19 Identities=37% Similarity=0.515 Sum_probs=16.7
Q ss_pred HhCCCCEEEEccCCChhHH
Q 007106 133 AMQGRDMIGRARTGTGKTL 151 (618)
Q Consensus 133 i~~~~~~ll~~~tGsGKT~ 151 (618)
+..+..+++.++||||||.
T Consensus 168 i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH
T ss_pred ccCCCEEEEECCCCCCHHH
Confidence 4567889999999999997
No 366
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=51.84 E-value=6.5 Score=33.95 Aligned_cols=16 Identities=13% Similarity=-0.172 Sum_probs=13.8
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
.+++.++.|||||.++
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 367
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=51.75 E-value=14 Score=42.16 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=40.3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHh--CCCCcEEE--------EEcCcchhhhhHH---hh--cCCCEEEEChHHHHHHH
Q 007106 172 RNPLCLVLAPTRELAKQVEKEFHES--APSLDTIC--------VYGGTPISHQMRA---LD--YGVDAVVGTPGRVIDLI 236 (618)
Q Consensus 172 ~~~~~lil~Pt~~La~q~~~~l~~~--~~~~~~~~--------~~g~~~~~~~~~~---l~--~~~~Ilv~T~~~l~~~l 236 (618)
.+.++||.|+++..+..+.+.|.+. ++.+++.. ++++.+..++.+. +. ..++|||+| + +
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT-----~-~ 703 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIAT-----S-V 703 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEE-----C-C
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEe-----C-c
Confidence 3678999999999999999999875 22233333 3444444443332 22 347899999 3 3
Q ss_pred HhcCCCCCCccEEEE
Q 007106 237 KRNALNLSEVQFVVL 251 (618)
Q Consensus 237 ~~~~~~l~~~~~vVi 251 (618)
....+++..+++||.
T Consensus 704 ~~eGIDlp~v~~VI~ 718 (936)
T 4a2w_A 704 ADEGIDIVQCNLVVL 718 (936)
T ss_dssp ------CCCCSEEEE
T ss_pred hhcCCcchhCCEEEE
Confidence 344567889999985
No 368
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=51.71 E-value=8.9 Score=34.36 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=14.2
Q ss_pred CCCCEEEEccCCChhHHH
Q 007106 135 QGRDMIGRARTGTGKTLA 152 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~ 152 (618)
.++-+.|.+|+|+|||..
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356789999999999974
No 369
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=51.69 E-value=7.3 Score=39.13 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=18.3
Q ss_pred HHHhCCCC--EEEEccCCChhHHHH
Q 007106 131 EPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 131 ~~i~~~~~--~ll~~~tGsGKT~~~ 153 (618)
+.++.+.+ ++..+.||||||.+.
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 44567766 678999999999876
No 370
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=51.51 E-value=10 Score=38.40 Aligned_cols=26 Identities=27% Similarity=0.634 Sum_probs=21.4
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007106 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~ll~~~tGsGKT~~~ 153 (618)
..+..++.+.+ ++..+.||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 36777788877 678999999999875
No 371
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=51.27 E-value=12 Score=39.60 Aligned_cols=41 Identities=17% Similarity=0.303 Sum_probs=24.7
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt 182 (618)
.+++|.+.||||||.+. ..++..++... .....+++++=|.
T Consensus 215 pHlLIaG~TGSGKS~~L-~tlI~sLl~~~----sP~ev~lilIDpK 255 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGV-NAMLLSILFKS----TPSEARLIMIDPK 255 (574)
T ss_dssp CCEEEECCTTSSHHHHH-HHHHHHHHTTC----CTTTEEEEEECSS
T ss_pred CeeEEECCCCCCHHHHH-HHHHHHHHHhC----CCcceEEEEeCCC
Confidence 57999999999999654 44444443211 0113456666665
No 372
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=51.23 E-value=8.7 Score=34.38 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=16.0
Q ss_pred hCCCCEEEEccCCChhHHHH
Q 007106 134 MQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 134 ~~~~~~ll~~~tGsGKT~~~ 153 (618)
..+.-+++.+++|||||..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34566889999999999743
No 373
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=51.15 E-value=23 Score=34.08 Aligned_cols=70 Identities=11% Similarity=0.088 Sum_probs=45.6
Q ss_pred CeEEEEecchhHHHHHHHHHHcc------CCccccccCCCHHHHHHHHHHHhcCCccEEEEccc-----c-c-cCCCCCC
Q 007106 345 GKCIVFTQTKRDADRLAHAMAKS------YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-----A-A-RGLDVPN 411 (618)
Q Consensus 345 ~~~lVf~~~~~~~~~l~~~L~~~------~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~-----~-~-~Gidi~~ 411 (618)
.++||.+|+++-+..+++.+.+. +.+..++++...... .....+|||+|+- + . ..+++.+
T Consensus 163 ~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~ 235 (300)
T 3fmo_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (300)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGGG
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChhh
Confidence 37999999999999988777542 344445554432211 1345789999962 2 2 2477888
Q ss_pred ccEEEEcCCC
Q 007106 412 VDLIIHYELP 421 (618)
Q Consensus 412 ~~~VI~~~~p 421 (618)
+.++|.-.+.
T Consensus 236 l~~lVlDEad 245 (300)
T 3fmo_B 236 IKVFVLDEAD 245 (300)
T ss_dssp CSEEEETTHH
T ss_pred ceEEEEeCHH
Confidence 8888875543
No 374
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=51.13 E-value=9 Score=34.61 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=14.7
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
+.-+++.+|+|+|||..+
T Consensus 8 g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CcEEEEECcCCCCHHHHH
Confidence 445889999999999743
No 375
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=50.80 E-value=10 Score=32.71 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=14.9
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
++.++|.+++|||||..+
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 356899999999999743
No 376
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=50.78 E-value=20 Score=41.94 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=40.8
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhh---cCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007106 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEK---HGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~---~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
..+|.|..|||||.+...-++..+...... ...-.-.++|+|+=|+.-|.++.+++.+.
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 469999999999988766666666431100 00012347999999999998888887654
No 377
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=50.73 E-value=8.9 Score=34.26 Aligned_cols=18 Identities=33% Similarity=0.342 Sum_probs=15.0
Q ss_pred CCCCEEEEccCCChhHHH
Q 007106 135 QGRDMIGRARTGTGKTLA 152 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~ 152 (618)
.+.-+.|.+|+|||||..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 455688999999999974
No 378
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=50.62 E-value=33 Score=37.96 Aligned_cols=69 Identities=12% Similarity=0.015 Sum_probs=49.0
Q ss_pred cCCeEEEEecchhHHHHHHHHHHc-----cCCccccccCCCHHHHHHHHHHHhcCCccEEEEcccc------ccC-----
Q 007106 343 KGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA------ARG----- 406 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~------~~G----- 406 (618)
.+.+++|.|+|+.-|...++.+.. .+.+.++.|+++.++|.... .++|+|+|+-- ...
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~~~ 187 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAFSP 187 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhccH
Confidence 466899999999999888776643 37788889999876654433 37899999631 222
Q ss_pred --CCCCCccEEEE
Q 007106 407 --LDVPNVDLIIH 417 (618)
Q Consensus 407 --idi~~~~~VI~ 417 (618)
+....+.++|.
T Consensus 188 ~~~~~~~l~~lVl 200 (853)
T 2fsf_A 188 EERVQRKLHYALV 200 (853)
T ss_dssp GGCCCCSCCEEEE
T ss_pred hHhcccCCcEEEE
Confidence 45566777664
No 379
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=50.47 E-value=6.3 Score=46.78 Aligned_cols=40 Identities=20% Similarity=0.358 Sum_probs=28.8
Q ss_pred CCCccEEEEchhhhhccCCcHHHHHHHHHhCCCCCcEEEE
Q 007106 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282 (618)
Q Consensus 243 l~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~l 282 (618)
+++-+++|+||+=.-+|..-...+.+.+..+.+++-+|+.
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iii 609 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIII 609 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEE
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 5677899999999888877777777777666444444443
No 380
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=50.18 E-value=7.1 Score=33.99 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=13.6
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
-+++.+++|||||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3789999999999854
No 381
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=50.05 E-value=10 Score=34.23 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=21.3
Q ss_pred ChHHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007106 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~ll~~~tGsGKT~~~ 153 (618)
.++.++... .+..++.+++.+++|||||..+
T Consensus 12 ~~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 12 LTRSERTEL-RNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CCHHHHHHH-HTSSCEEEEEECSTTSSHHHHH
T ss_pred cCHHHhhcc-cCCCCCEEEEECCCCCCHHHHH
Confidence 345555542 3445567889999999999754
No 382
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=49.64 E-value=5.6 Score=35.04 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=14.9
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
++.+++.+++|||||.++
T Consensus 4 g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346899999999999854
No 383
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=48.81 E-value=9.2 Score=37.35 Aligned_cols=16 Identities=25% Similarity=0.108 Sum_probs=14.0
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
.++|.+|||||||..+
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999755
No 384
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=48.02 E-value=13 Score=34.86 Aligned_cols=20 Identities=35% Similarity=0.413 Sum_probs=17.0
Q ss_pred hCCCCEEEEccCCChhHHHH
Q 007106 134 MQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 134 ~~~~~~ll~~~tGsGKT~~~ 153 (618)
+.+..++|.+++|||||.++
T Consensus 46 l~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 34788999999999999854
No 385
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=47.72 E-value=11 Score=33.89 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=21.7
Q ss_pred ccEEEEchhhhhccCC-cHHHHHHHHHhCC----CCCcEEEEEec
Q 007106 246 VQFVVLDEADQMLSVG-FAEDVEVILERLP----QNRQSMMFSAT 285 (618)
Q Consensus 246 ~~~vViDEaH~~~~~~-~~~~~~~il~~l~----~~~~~l~lSAT 285 (618)
-.+|||||||.+.... .......++..+. ...++|+++..
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 5689999999984321 0010112333332 34567777766
No 386
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=47.67 E-value=93 Score=34.53 Aligned_cols=72 Identities=13% Similarity=0.115 Sum_probs=52.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhhc----CC---CEEEEChHHHHHHHHhcCCCCCC
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY----GV---DAVVGTPGRVIDLIKRNALNLSE 245 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~----~~---~Ilv~T~~~l~~~l~~~~~~l~~ 245 (618)
+.++||.+.....+.-+.+.|... ++.+..++|..+...+...+.. .. -+|++| ..-...+++..
T Consensus 572 g~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt------~agg~GlNL~~ 643 (800)
T 3mwy_W 572 GHRVLIFSQMVRMLDILGDYLSIK--GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLST------RAGGLGINLMT 643 (800)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHH--TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEH------HHHTTTCCCTT
T ss_pred CCeEEEEechHHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEec------ccccCCCCccc
Confidence 668999999999988888888765 5778888888887766655542 12 366666 33345677888
Q ss_pred ccEEEEc
Q 007106 246 VQFVVLD 252 (618)
Q Consensus 246 ~~~vViD 252 (618)
.+.||+=
T Consensus 644 a~~VI~~ 650 (800)
T 3mwy_W 644 ADTVVIF 650 (800)
T ss_dssp CCEEEES
T ss_pred cceEEEe
Confidence 8888853
No 387
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=47.58 E-value=11 Score=32.59 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=15.3
Q ss_pred CCEEEEccCCChhHHHHH
Q 007106 137 RDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l 154 (618)
++++|.+..|||||.++-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 478999999999998653
No 388
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=47.48 E-value=8.1 Score=34.99 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=13.9
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
.++|.+++|||||.++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999855
No 389
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=47.47 E-value=10 Score=34.29 Aligned_cols=18 Identities=17% Similarity=0.071 Sum_probs=14.7
Q ss_pred CCEEEEccCCChhHHHHH
Q 007106 137 RDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l 154 (618)
+.+++.+|+||||++.+-
T Consensus 1 M~Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAK 18 (206)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 357899999999998653
No 390
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=46.87 E-value=21 Score=34.43 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=14.0
Q ss_pred CCCEEEEccCCChhHHH
Q 007106 136 GRDMIGRARTGTGKTLA 152 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~ 152 (618)
+.-+.+.+|+|+|||..
T Consensus 102 g~vi~lvG~nGsGKTTl 118 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT 118 (304)
T ss_dssp SSEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCcHHHH
Confidence 34578899999999974
No 391
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=46.83 E-value=8.4 Score=34.91 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=13.9
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
.++|.+++|||||.++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 392
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=46.65 E-value=10 Score=33.45 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=15.8
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007106 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~ 153 (618)
....+++.+++|||||.++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4456899999999999854
No 393
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=46.62 E-value=48 Score=36.77 Aligned_cols=69 Identities=16% Similarity=0.131 Sum_probs=49.5
Q ss_pred cCCeEEEEecchhHHHHHHHHHHc-----cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccc-c-----c-------
Q 007106 343 KGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-A-----A------- 404 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~-~-----~------- 404 (618)
.+..++|.|++.+-|...++.+.. .+.+.++.++++.++|.... .++|+++|+- + .
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~~ 196 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLYK 196 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcch
Confidence 466899999999999888776643 47788888999887665442 3789999961 1 1
Q ss_pred cCCCCCCccEEEE
Q 007106 405 RGLDVPNVDLIIH 417 (618)
Q Consensus 405 ~Gidi~~~~~VI~ 417 (618)
.-+++..++++|.
T Consensus 197 ~~l~lr~~~~lVl 209 (844)
T 1tf5_A 197 EQMVQRPLHFAVI 209 (844)
T ss_dssp GGCCCCCCCEEEE
T ss_pred hhhcccCCCEEEE
Confidence 1255667777664
No 394
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=46.21 E-value=19 Score=34.50 Aligned_cols=16 Identities=31% Similarity=0.256 Sum_probs=14.3
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
.+++.+|+|+|||.++
T Consensus 49 ~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEESCSSSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 5999999999999755
No 395
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=46.15 E-value=8.5 Score=34.37 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=15.6
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007106 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~ 153 (618)
.++.+++.++.|||||.++
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3456899999999999854
No 396
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=46.07 E-value=8.2 Score=33.57 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=14.3
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
..+++.++.|||||..+
T Consensus 9 ~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEEECSTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 45889999999999754
No 397
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=46.07 E-value=6.9 Score=34.12 Aligned_cols=19 Identities=16% Similarity=0.113 Sum_probs=15.0
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007106 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~ 153 (618)
.+.-+.+.+++|||||..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3445789999999999744
No 398
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=45.87 E-value=20 Score=31.39 Aligned_cols=18 Identities=28% Similarity=0.204 Sum_probs=14.7
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
+..+++.+++|||||..+
T Consensus 13 ~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 345889999999999754
No 399
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=45.85 E-value=20 Score=34.97 Aligned_cols=18 Identities=28% Similarity=0.315 Sum_probs=14.3
Q ss_pred CCEEEEccCCChhHHHHH
Q 007106 137 RDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l 154 (618)
+-+++.+++|+|||.++.
T Consensus 106 ~vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347889999999997543
No 400
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=45.44 E-value=14 Score=33.69 Aligned_cols=20 Identities=15% Similarity=0.067 Sum_probs=15.4
Q ss_pred HhCCCCEEEEccCCChhHHH
Q 007106 133 AMQGRDMIGRARTGTGKTLA 152 (618)
Q Consensus 133 i~~~~~~ll~~~tGsGKT~~ 152 (618)
+..++-+.|.+|+|+|||..
T Consensus 20 i~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp --CCCCEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34566789999999999973
No 401
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=45.31 E-value=9.4 Score=32.83 Aligned_cols=16 Identities=13% Similarity=-0.085 Sum_probs=13.8
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
.+++.+++|||||.++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999854
No 402
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=45.12 E-value=11 Score=36.98 Aligned_cols=16 Identities=25% Similarity=0.100 Sum_probs=13.9
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
-++|.+|||||||..+
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4789999999999755
No 403
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=45.02 E-value=9.4 Score=33.68 Aligned_cols=17 Identities=29% Similarity=0.190 Sum_probs=14.3
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
+-+++.+++|||||.++
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35889999999999854
No 404
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=44.89 E-value=13 Score=32.18 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=14.2
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
.++|.+++|||||.++
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6899999999999854
No 405
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=44.79 E-value=18 Score=37.00 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=15.4
Q ss_pred CCEEEEccCCChhHHHHHH
Q 007106 137 RDMIGRARTGTGKTLAFGI 155 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~ 155 (618)
..+++.+++|+|||..+..
T Consensus 100 ~vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CCEEEECCSSSSTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3688999999999976543
No 406
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=44.41 E-value=12 Score=36.83 Aligned_cols=18 Identities=28% Similarity=0.263 Sum_probs=15.2
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
..++++.+|+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 356999999999999754
No 407
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=44.37 E-value=14 Score=32.46 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=13.0
Q ss_pred CEEEEccCCChhHHH
Q 007106 138 DMIGRARTGTGKTLA 152 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~ 152 (618)
-+.|.+|+|+|||..
T Consensus 3 ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 3 PIVISGPSGTGKSTL 17 (186)
T ss_dssp CEEEESSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999974
No 408
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=44.27 E-value=13 Score=33.10 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=15.0
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
+..++|.++.|||||..+
T Consensus 29 g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999743
No 409
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=44.26 E-value=13 Score=33.34 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=15.7
Q ss_pred HHhCCCCEEEEccCCChhHHH
Q 007106 132 PAMQGRDMIGRARTGTGKTLA 152 (618)
Q Consensus 132 ~i~~~~~~ll~~~tGsGKT~~ 152 (618)
.+..+.-+.|.+|+|+|||..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 456677789999999999973
No 410
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=44.25 E-value=16 Score=37.85 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=15.4
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
..++|+.+|+|+|||..+
T Consensus 201 ~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 357999999999999755
No 411
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=44.19 E-value=9.9 Score=34.00 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=14.5
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
+.++|.++.|||||.++
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36899999999999754
No 412
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=44.00 E-value=15 Score=34.09 Aligned_cols=18 Identities=22% Similarity=0.145 Sum_probs=15.2
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
.+.+++.++.|||||.++
T Consensus 29 ~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 346899999999999854
No 413
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=43.94 E-value=16 Score=32.67 Aligned_cols=74 Identities=22% Similarity=0.263 Sum_probs=42.0
Q ss_pred CCeEEEEecchhHHHH-HHHHHHc----cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccc-----ccc-------C
Q 007106 344 GGKCIVFTQTKRDADR-LAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-----AAR-------G 406 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~-l~~~L~~----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~-----~~~-------G 406 (618)
..++||+|+++.-++. +.+.+.+ .+.+..++++....++...+. ...+|+|+|.- +.. .
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 157 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAG 157 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHHHHHHHHHC-------C
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHHHHHHHHhccCcccccc
Confidence 5689999999988777 5554433 356777777654332221111 14678999852 122 2
Q ss_pred CCCCCccEEEEcCCC
Q 007106 407 LDVPNVDLIIHYELP 421 (618)
Q Consensus 407 idi~~~~~VI~~~~p 421 (618)
+.+.++++||.-.+.
T Consensus 158 ~~~~~~~~iIiDEah 172 (216)
T 3b6e_A 158 VQLSDFSLIIIDECH 172 (216)
T ss_dssp CCGGGCSEEEETTC-
T ss_pred cchhcccEEEEECch
Confidence 455666777764443
No 414
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=43.80 E-value=8.9 Score=33.82 Aligned_cols=17 Identities=18% Similarity=0.104 Sum_probs=14.4
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
..+++.+++|||||.++
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35889999999999855
No 415
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=43.33 E-value=25 Score=44.62 Aligned_cols=48 Identities=25% Similarity=0.232 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHcCCCCChHHH-HHHH---HHHhCCCCEEEEccCCChhHHHHH
Q 007106 106 ISQDIVAALARRGISKLFPIQ-KAVL---EPAMQGRDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q-~~~i---~~i~~~~~~ll~~~tGsGKT~~~l 154 (618)
+.+.+.+.+.+.++. +.+.+ .+++ ..+...+.+++.+|||||||.++-
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 344555666666665 45544 3333 344556789999999999998654
No 416
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=43.30 E-value=12 Score=32.36 Aligned_cols=17 Identities=18% Similarity=0.096 Sum_probs=14.4
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
+.+++.+++|||||.++
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999854
No 417
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=43.29 E-value=11 Score=34.61 Aligned_cols=18 Identities=17% Similarity=0.041 Sum_probs=15.0
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
.+.+++.+++|||||.++
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356899999999999854
No 418
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=43.28 E-value=1.7e+02 Score=30.30 Aligned_cols=67 Identities=16% Similarity=0.183 Sum_probs=37.4
Q ss_pred HHHHHH---hCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEc--CcHHHHHHHHHHHHH
Q 007106 128 AVLEPA---MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA--PTRELAKQVEKEFHE 195 (618)
Q Consensus 128 ~~i~~i---~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~--Pt~~La~q~~~~l~~ 195 (618)
++|+.+ -+++..+|.++.|+|||..++-.|++....+... .......++|+. -...-+.++.+++.+
T Consensus 151 raID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~-~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~ 222 (510)
T 2ck3_A 151 KAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGT-DEKKKLYCIYVAIGQKRSTVAQLVKRLTD 222 (510)
T ss_dssp HHHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSC-CTTTCCEEEEEEESCCHHHHHHHHHHHHH
T ss_pred eeeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhcccc-ccCCCeEEEEEECCCCcHHHHHHHHHHHh
Confidence 555554 4688999999999999986655555554322000 001122333332 233445566666665
No 419
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=42.77 E-value=14 Score=32.50 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=13.0
Q ss_pred CEEEEccCCChhHHH
Q 007106 138 DMIGRARTGTGKTLA 152 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~ 152 (618)
.+.+.+|.|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999973
No 420
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=42.73 E-value=55 Score=33.40 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.4
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
.+++|+.+|+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 367999999999999754
No 421
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=42.73 E-value=10 Score=34.26 Aligned_cols=16 Identities=19% Similarity=0.040 Sum_probs=13.9
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
.+++.+++|||||.++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 422
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=42.71 E-value=14 Score=36.29 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=14.7
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
..+++.+|+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 56999999999999743
No 423
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=42.44 E-value=11 Score=33.19 Aligned_cols=16 Identities=25% Similarity=0.212 Sum_probs=13.7
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
.+++.++.|||||..+
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 424
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=42.43 E-value=12 Score=33.17 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=13.4
Q ss_pred CCEEEEccCCChhHH
Q 007106 137 RDMIGRARTGTGKTL 151 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~ 151 (618)
+-++|.+|.|+|||.
T Consensus 2 RpIVi~GPSG~GK~T 16 (186)
T 1ex7_A 2 RPIVISGPSGTGKST 16 (186)
T ss_dssp CCEEEECCTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 458999999999997
No 425
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=42.43 E-value=11 Score=33.53 Aligned_cols=18 Identities=17% Similarity=0.143 Sum_probs=15.1
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
..-+++.+++|||||.++
T Consensus 12 ~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp SCEEEEEECTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 356899999999999854
No 426
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=42.26 E-value=14 Score=32.49 Aligned_cols=16 Identities=25% Similarity=0.245 Sum_probs=13.3
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
-+++.+++|+|||..+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3688999999999743
No 427
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=42.01 E-value=12 Score=33.99 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=15.0
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
.+.+++.+++|||||.++
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 346899999999999854
No 428
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=41.75 E-value=13 Score=32.59 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=14.5
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
+.+++.+++|||||.++
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35899999999999855
No 429
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=41.74 E-value=13 Score=37.40 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=13.5
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
-++|.+|||+|||..+
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 3689999999999755
No 430
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=41.74 E-value=12 Score=33.29 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=14.5
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
+.+++.+++|||||.++
T Consensus 21 ~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999854
No 431
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=41.40 E-value=25 Score=34.21 Aligned_cols=14 Identities=29% Similarity=0.214 Sum_probs=12.5
Q ss_pred CEEEEccCCChhHH
Q 007106 138 DMIGRARTGTGKTL 151 (618)
Q Consensus 138 ~~ll~~~tGsGKT~ 151 (618)
-++|.++.|+|||.
T Consensus 6 v~~i~G~~GaGKTT 19 (318)
T 1nij_A 6 VTLLTGFLGAGKTT 19 (318)
T ss_dssp EEEEEESSSSSCHH
T ss_pred EEEEEecCCCCHHH
Confidence 37899999999997
No 432
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=41.24 E-value=15 Score=39.50 Aligned_cols=15 Identities=20% Similarity=0.248 Sum_probs=13.9
Q ss_pred CEEEEccCCChhHHH
Q 007106 138 DMIGRARTGTGKTLA 152 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~ 152 (618)
++|+.+|+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999974
No 433
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=41.05 E-value=18 Score=39.54 Aligned_cols=73 Identities=14% Similarity=0.292 Sum_probs=41.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhC--CCCcEEEEEc--------CcchhhhhHH---hh--cCCCEEEEChHHHHHHHH
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYG--------GTPISHQMRA---LD--YGVDAVVGTPGRVIDLIK 237 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~--~~~~~~~~~g--------~~~~~~~~~~---l~--~~~~Ilv~T~~~l~~~l~ 237 (618)
..++||.|+++..+..+++.+.+.. ..+++..++| +.+..++.+. +. ...+|||+| .+.
T Consensus 398 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT------~v~ 471 (696)
T 2ykg_A 398 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIAT------SVA 471 (696)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEE------ESS
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEe------chh
Confidence 5689999999999999999998752 2356666643 4444433322 22 347899999 333
Q ss_pred hcCCCCCCccEEEE
Q 007106 238 RNALNLSEVQFVVL 251 (618)
Q Consensus 238 ~~~~~l~~~~~vVi 251 (618)
...+++.++++||.
T Consensus 472 ~~GiDip~v~~VI~ 485 (696)
T 2ykg_A 472 DEGIDIAQCNLVIL 485 (696)
T ss_dssp CCC---CCCSEEEE
T ss_pred hcCCcCccCCEEEE
Confidence 45567888998884
No 434
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=40.78 E-value=14 Score=33.00 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=15.3
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007106 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~ 153 (618)
.+.-+++.+++|||||..+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456889999999999754
No 435
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=40.73 E-value=16 Score=36.17 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=16.0
Q ss_pred CCCC--EEEEccCCChhHHHHH
Q 007106 135 QGRD--MIGRARTGTGKTLAFG 154 (618)
Q Consensus 135 ~~~~--~ll~~~tGsGKT~~~l 154 (618)
.+.+ ++..+.||||||.+.+
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEEe
Confidence 3555 6889999999998763
No 436
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=40.71 E-value=20 Score=30.39 Aligned_cols=14 Identities=21% Similarity=0.294 Sum_probs=12.5
Q ss_pred EEEEccCCChhHHH
Q 007106 139 MIGRARTGTGKTLA 152 (618)
Q Consensus 139 ~ll~~~tGsGKT~~ 152 (618)
.+|.+|+|+|||..
T Consensus 26 ~~I~G~NGsGKSti 39 (149)
T 1f2t_A 26 NLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68999999999974
No 437
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=40.54 E-value=16 Score=33.59 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=15.2
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
.+.+++.+++|||||.++
T Consensus 16 ~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356999999999999855
No 438
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=40.51 E-value=22 Score=38.20 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=19.2
Q ss_pred HHHHhCCCCEEEEccCCChhHHHH
Q 007106 130 LEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 130 i~~i~~~~~~ll~~~tGsGKT~~~ 153 (618)
...+..+..+++.+|+|+|||..+
T Consensus 54 ~~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 54 KTAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHH
T ss_pred cccccCCCEEEEEeCCCCCHHHHH
Confidence 334566789999999999999744
No 439
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=40.29 E-value=12 Score=36.00 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=13.7
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
-+++.+++|||||..+
T Consensus 35 livl~G~sGsGKSTla 50 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEECCTTSCTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999754
No 440
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=40.18 E-value=27 Score=32.87 Aligned_cols=51 Identities=6% Similarity=-0.052 Sum_probs=30.6
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC
Q 007106 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
..+++.+.+|+|||+.++..+.+.+.+ +-++++++-. +-..++.+.+..+.
T Consensus 22 s~~li~g~p~~~~~~l~~qfl~~g~~~---------Ge~~~~~~~~-e~~~~l~~~~~~~G 72 (260)
T 3bs4_A 22 LILIHEEDASSRGKDILFYILSRKLKS---------DNLVGMFSIS-YPLQLIIRILSRFG 72 (260)
T ss_dssp EEEEEECSGGGCHHHHHHHHHHHHHHT---------TCEEEEEECS-SCHHHHHHHHHHTT
T ss_pred cEEEEEeCCCccHHHHHHHHHHHHHHC---------CCcEEEEEEe-CCHHHHHHHHHHcC
Confidence 457888788888885444444444432 5567777653 44455666665553
No 441
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=40.17 E-value=9.4 Score=34.33 Aligned_cols=21 Identities=19% Similarity=-0.058 Sum_probs=15.8
Q ss_pred HhCCCCEEEEccCCChhHHHH
Q 007106 133 AMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 133 i~~~~~~ll~~~tGsGKT~~~ 153 (618)
+..+.-+.|.+++|||||..+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 334445789999999999743
No 442
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=40.07 E-value=11 Score=33.77 Aligned_cols=18 Identities=22% Similarity=0.194 Sum_probs=14.8
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
++-+++.++.|||||..+
T Consensus 4 ~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 345889999999999854
No 443
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=40.06 E-value=12 Score=34.10 Aligned_cols=19 Identities=21% Similarity=-0.018 Sum_probs=15.3
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007106 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~ 153 (618)
.+.-+.|.+|+|+|||..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SSEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4456899999999999744
No 444
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=40.04 E-value=17 Score=32.93 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=14.8
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
+.+++.+++|||||.++
T Consensus 6 ~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 6 LKVMISGAPASGKGTQC 22 (222)
T ss_dssp CCEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999854
No 445
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=40.00 E-value=1.9e+02 Score=25.30 Aligned_cols=127 Identities=11% Similarity=0.035 Sum_probs=48.3
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhh----hcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcch
Q 007106 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNE----KHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPI 211 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~----~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~ 211 (618)
+-.+-+....|-|=|+.+.+|+......... ......+.++|||-........+...|.++. +..+
T Consensus 20 gG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g--~~~v-------- 89 (206)
T 3mm4_A 20 MASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMG--VSEV-------- 89 (206)
T ss_dssp -----------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHTT--CSEE--------
T ss_pred CCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHcC--CCee--------
Confidence 3456778889999999888886433221111 0111234577888777666666666665541 1111
Q ss_pred hhhhHHhhcCCCEEEEChHHHHHHHHhc--------CCCCCCccEEEEchhhhhccCCcHHHHHHHHHh---CCCCCcEE
Q 007106 212 SHQMRALDYGVDAVVGTPGRVIDLIKRN--------ALNLSEVQFVVLDEADQMLSVGFAEDVEVILER---LPQNRQSM 280 (618)
Q Consensus 212 ~~~~~~l~~~~~Ilv~T~~~l~~~l~~~--------~~~l~~~~~vViDEaH~~~~~~~~~~~~~il~~---l~~~~~~l 280 (618)
..+.+....+..+... ...-..+++||+|= .|.+.+-...+..+... ..+...+|
T Consensus 90 ------------~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~--~lp~~~G~el~~~lr~~~~~~~~~~piI 155 (206)
T 3mm4_A 90 ------------EQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDC--QMPEMDGYEATREIRKVEKSYGVRTPII 155 (206)
T ss_dssp ------------EEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEES--CCSSSCHHHHHHHHHHHHHTTTCCCCEE
T ss_pred ------------eeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcC--CCCCCCHHHHHHHHHhhhhhcCCCCcEE
Confidence 1122334444444332 12223578899883 23333333333333332 24678899
Q ss_pred EEEecC
Q 007106 281 MFSATM 286 (618)
Q Consensus 281 ~lSAT~ 286 (618)
++|+..
T Consensus 156 ~ls~~~ 161 (206)
T 3mm4_A 156 AVSGHD 161 (206)
T ss_dssp EEESSC
T ss_pred EEECCC
Confidence 999976
No 446
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=39.87 E-value=7 Score=43.73 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=15.6
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007106 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~ 153 (618)
....+++.+|+|+|||..+
T Consensus 510 ~~~~vLL~GppGtGKT~La 528 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHH
T ss_pred CCceeEEECCCCCCHHHHH
Confidence 3457999999999999743
No 447
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=39.47 E-value=8.7 Score=35.31 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=12.0
Q ss_pred HhCCCCEEEEccCCChhHHH
Q 007106 133 AMQGRDMIGRARTGTGKTLA 152 (618)
Q Consensus 133 i~~~~~~ll~~~tGsGKT~~ 152 (618)
+..+.-+.|.+|+|||||..
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp EECCCEEEEECSCC----CH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34556688999999999974
No 448
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=39.38 E-value=12 Score=32.63 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=14.6
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
++.+++.++.|||||.++
T Consensus 5 g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 445789999999999744
No 449
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=39.37 E-value=34 Score=29.70 Aligned_cols=15 Identities=20% Similarity=-0.051 Sum_probs=12.6
Q ss_pred CEEEEccCCChhHHH
Q 007106 138 DMIGRARTGTGKTLA 152 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~ 152 (618)
-+.+.++.|||||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999963
No 450
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=38.90 E-value=17 Score=31.88 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=13.8
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
.+++.+++|||||.++
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 451
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=38.66 E-value=17 Score=32.24 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=13.6
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
.+++.+++|||||..+
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4789999999999744
No 452
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=38.63 E-value=65 Score=35.93 Aligned_cols=69 Identities=14% Similarity=0.109 Sum_probs=49.8
Q ss_pred cCCeEEEEecchhHHHHHHHHHHc-----cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccc-c-----cc------
Q 007106 343 KGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-A-----AR------ 405 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~-~-----~~------ 405 (618)
.+..++|.+++..-|...++.+.. .+.+.++.++++.++|.... .++|+++|+- + ..
T Consensus 151 ~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~~~~ 224 (922)
T 1nkt_A 151 AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMAHSL 224 (922)
T ss_dssp TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhhccH
Confidence 466899999999999888776643 47788889999887765543 3789999962 1 11
Q ss_pred -CCCCCCccEEEE
Q 007106 406 -GLDVPNVDLIIH 417 (618)
Q Consensus 406 -Gidi~~~~~VI~ 417 (618)
-++...++++|.
T Consensus 225 ~~l~lr~l~~lIV 237 (922)
T 1nkt_A 225 DDLVQRGHHYAIV 237 (922)
T ss_dssp GGCCCCCCCEEEE
T ss_pred hhhccCCCCEEEE
Confidence 255667777775
No 453
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=38.53 E-value=59 Score=36.39 Aligned_cols=54 Identities=17% Similarity=0.141 Sum_probs=42.4
Q ss_pred cCCeEEEEecchhHHHHHHHHHHc-----cCCccccccCCCHHHHHHHHHHHhcCCccEEEEccc
Q 007106 343 KGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~ 402 (618)
.+.+++|.++|..-|...++.+.. .+.+.++.++++.++|.... .++|+++|+.
T Consensus 119 ~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTpg 177 (997)
T 2ipc_A 119 TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTNS 177 (997)
T ss_dssp TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEHH
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECch
Confidence 466899999999998888877643 36788889999877766554 3799999963
No 454
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=38.42 E-value=28 Score=33.44 Aligned_cols=19 Identities=32% Similarity=0.270 Sum_probs=14.5
Q ss_pred CCEEEEccCCChhHHHHHH
Q 007106 137 RDMIGRARTGTGKTLAFGI 155 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l~ 155 (618)
.-+++.+++|+|||..+..
T Consensus 99 ~vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp EEEEEECSSCSSTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3477889999999975543
No 455
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=38.34 E-value=14 Score=32.96 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=13.7
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
.+++.+++|||||.++
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 456
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=38.34 E-value=21 Score=35.89 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=24.9
Q ss_pred CccEEEEchhhhhccC---CcHHHHHHHHHhCCC-CCcEEEEEec
Q 007106 245 EVQFVVLDEADQMLSV---GFAEDVEVILERLPQ-NRQSMMFSAT 285 (618)
Q Consensus 245 ~~~~vViDEaH~~~~~---~~~~~~~~il~~l~~-~~~~l~lSAT 285 (618)
.-.++|+||+|.++.. .+...+..+++..++ ..-+++.|-+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~ 306 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQN 306 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESC
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCC
Confidence 4578999999999852 244556666666543 3333443433
No 457
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=38.16 E-value=19 Score=31.39 Aligned_cols=15 Identities=20% Similarity=0.082 Sum_probs=12.9
Q ss_pred CEEEEccCCChhHHH
Q 007106 138 DMIGRARTGTGKTLA 152 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~ 152 (618)
-.+|.+++|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 468999999999974
No 458
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=37.96 E-value=14 Score=33.04 Aligned_cols=16 Identities=25% Similarity=0.077 Sum_probs=13.4
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
.+.|.++.|||||.++
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999854
No 459
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=37.93 E-value=35 Score=30.72 Aligned_cols=33 Identities=18% Similarity=0.062 Sum_probs=20.4
Q ss_pred EEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcC
Q 007106 140 IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (618)
Q Consensus 140 ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~P 181 (618)
+....+|.|||.+++..+..... .+.+++++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~---------~G~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKA---------AGYRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHH---------TTCCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHH---------CCCCEEEEcc
Confidence 34456899999877544433321 1567888755
No 460
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=37.75 E-value=18 Score=32.99 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=14.5
Q ss_pred CCEEEEccCCChhHHHHH
Q 007106 137 RDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~l 154 (618)
+-++|.+|+||||++.+-
T Consensus 30 kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp EEEEEECCTTCCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 447889999999998653
No 461
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=37.71 E-value=37 Score=43.76 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=31.1
Q ss_pred CHHHHHHHHHcCCCCChHHH-HHHH---HHHhCCCCEEEEccCCChhHHHHH
Q 007106 107 SQDIVAALARRGISKLFPIQ-KAVL---EPAMQGRDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 107 ~~~l~~~l~~~~~~~l~~~Q-~~~i---~~i~~~~~~ll~~~tGsGKT~~~l 154 (618)
...+.+.+.+.++. +.+.+ .+++ +.+...+.+++.+|||+|||.++-
T Consensus 874 ~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 874 RKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 44555566667765 45544 3444 334456679999999999998653
No 462
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=37.70 E-value=74 Score=30.18 Aligned_cols=76 Identities=12% Similarity=0.124 Sum_probs=45.4
Q ss_pred hCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCC-eEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchh
Q 007106 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP-LCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212 (618)
Q Consensus 134 ~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~-~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~ 212 (618)
++++.++|.+.-|.|+.+++.+. .. +. .+.|+.-+.+-++++++++....+...+.... -.
T Consensus 125 l~~k~vlVlGaGG~g~aia~~L~---~~-----------G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~-~~--- 186 (283)
T 3jyo_A 125 AKLDSVVQVGAGGVGNAVAYALV---TH-----------GVQKLQVADLDTSRAQALADVINNAVGREAVVGVD-AR--- 186 (283)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHH---HT-----------TCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEEC-ST---
T ss_pred cCCCEEEEECCcHHHHHHHHHHH---HC-----------CCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcC-HH---
Confidence 35677899888777777644322 11 44 57888888888888888887765544443321 11
Q ss_pred hhhHHhhcCCCEEEEC
Q 007106 213 HQMRALDYGVDAVVGT 228 (618)
Q Consensus 213 ~~~~~l~~~~~Ilv~T 228 (618)
.....-..++|||.|
T Consensus 187 -~l~~~l~~~DiVIna 201 (283)
T 3jyo_A 187 -GIEDVIAAADGVVNA 201 (283)
T ss_dssp -THHHHHHHSSEEEEC
T ss_pred -HHHHHHhcCCEEEEC
Confidence 111222346888755
No 463
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=37.68 E-value=27 Score=33.71 Aligned_cols=17 Identities=24% Similarity=0.198 Sum_probs=14.1
Q ss_pred CCCEEEEccCCChhHHH
Q 007106 136 GRDMIGRARTGTGKTLA 152 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~ 152 (618)
+.-+.+.+++|+|||..
T Consensus 100 g~vi~lvG~nGsGKTTl 116 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTS 116 (302)
T ss_dssp CEEEEEECCTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 34578999999999974
No 464
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=37.57 E-value=12 Score=32.66 Aligned_cols=18 Identities=22% Similarity=0.093 Sum_probs=11.0
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
.+.+++.++.|||||.++
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346889999999999854
No 465
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=37.39 E-value=31 Score=33.54 Aligned_cols=33 Identities=21% Similarity=0.154 Sum_probs=22.6
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEc
Q 007106 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA 180 (618)
Q Consensus 139 ~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~ 180 (618)
+++.+..|.|||.++...++..... +.+++++-
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~~lA~~---------G~rVLlvD 49 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATALWMARS---------GKKTLVIS 49 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT---------TCCEEEEE
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHC---------CCcEEEEe
Confidence 5778899999998876555443322 55677764
No 466
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=37.13 E-value=15 Score=32.84 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=13.6
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
.+.|.+++|||||.++
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999743
No 467
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=37.09 E-value=19 Score=32.59 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=14.6
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
+.+++.+++|||||.++
T Consensus 6 ~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999854
No 468
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=37.03 E-value=71 Score=32.97 Aligned_cols=76 Identities=11% Similarity=0.130 Sum_probs=51.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCcEEEEEcCcchhhhhHHhh---cC--CC-EEEEChHHHHHHHHhcCCCCCCc
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD---YG--VD-AVVGTPGRVIDLIKRNALNLSEV 246 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~---~~--~~-Ilv~T~~~l~~~l~~~~~~l~~~ 246 (618)
+.++||.|.++..+..+.+.+.+.. +..+..+++..+..++.+.++ .+ +. ++++| + .....+++...
T Consensus 341 ~~k~lvF~~~~~~~~~l~~~l~~~~-~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st-----~-~~~~Glnl~~~ 413 (500)
T 1z63_A 341 GDKIAIFTQFVDMGKIIRNIIEKEL-NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV-----K-AGGFGINLTSA 413 (500)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHH-TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEEC-----C-CC-CCCCCTTC
T ss_pred CCcEEEEEehHHHHHHHHHHHHHhh-CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEec-----c-cccCCCchhhC
Confidence 5689999999999998888887642 356777888887655544332 33 33 67777 2 22345678888
Q ss_pred cEEEEchhh
Q 007106 247 QFVVLDEAD 255 (618)
Q Consensus 247 ~~vViDEaH 255 (618)
+.||+-+..
T Consensus 414 ~~vi~~d~~ 422 (500)
T 1z63_A 414 NRVIHFDRW 422 (500)
T ss_dssp SEEEESSCC
T ss_pred CEEEEeCCC
Confidence 888865443
No 469
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=36.93 E-value=15 Score=32.89 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=15.6
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007106 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~ 153 (618)
++.-+++.++.|||||.++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456899999999999854
No 470
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=36.84 E-value=21 Score=32.63 Aligned_cols=19 Identities=37% Similarity=0.403 Sum_probs=15.1
Q ss_pred hCCCCEEEEccCCChhHHH
Q 007106 134 MQGRDMIGRARTGTGKTLA 152 (618)
Q Consensus 134 ~~~~~~ll~~~tGsGKT~~ 152 (618)
..+.-++|.+|.|+|||..
T Consensus 14 ~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp -CCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 4455689999999999973
No 471
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=36.44 E-value=16 Score=32.30 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=13.2
Q ss_pred EEEEccCCChhHHHH
Q 007106 139 MIGRARTGTGKTLAF 153 (618)
Q Consensus 139 ~ll~~~tGsGKT~~~ 153 (618)
+++.++.|||||.++
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999854
No 472
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=36.38 E-value=15 Score=33.48 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=13.8
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
.+++.+++|||||.++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 473
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=36.36 E-value=26 Score=34.30 Aligned_cols=57 Identities=11% Similarity=0.094 Sum_probs=33.3
Q ss_pred hHHHHHHHHhcCCCCCCccEEEEchhhh-hccCCcHHHHHHHHHhCCCCCcEEEEEecCC
Q 007106 229 PGRVIDLIKRNALNLSEVQFVVLDEADQ-MLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (618)
Q Consensus 229 ~~~l~~~l~~~~~~l~~~~~vViDEaH~-~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~ 287 (618)
...+.+.+....+ +...++|||||+|. +.. .....+.+.++..+++..+|+.+.++.
T Consensus 61 ~~~l~~~~~~~pl-f~~~kvvii~~~~~kl~~-~~~~aLl~~le~p~~~~~~il~~~~~~ 118 (343)
T 1jr3_D 61 WNAIFSLCQAMSL-FASRQTLLLLLPENGPNA-AINEQLLTLTGLLHDDLLLIVRGNKLS 118 (343)
T ss_dssp HHHHHHHHHHHHH-CCSCEEEEEECCSSCCCT-THHHHHHHHHTTCBTTEEEEEEESCCC
T ss_pred HHHHHHHhcCcCC-ccCCeEEEEECCCCCCCh-HHHHHHHHHHhcCCCCeEEEEEcCCCC
Confidence 3445444444333 56788999999997 543 234455566665555555555554443
No 474
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=36.33 E-value=16 Score=32.68 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=15.5
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007106 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~ 153 (618)
.++-+++.++.|||||.++
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 3456899999999999854
No 475
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=36.31 E-value=16 Score=32.15 Aligned_cols=16 Identities=25% Similarity=0.160 Sum_probs=13.5
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
.+++.++.|||||.++
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999754
No 476
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=35.97 E-value=20 Score=32.55 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=14.2
Q ss_pred CCEEEEccCCChhHHHH
Q 007106 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~~ 153 (618)
..+.|.+++|||||.++
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35889999999999754
No 477
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=35.56 E-value=93 Score=31.20 Aligned_cols=31 Identities=26% Similarity=0.272 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHh---CCCCEEEEccCCChhHHHH
Q 007106 123 FPIQKAVLEPAM---QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 123 ~~~Q~~~i~~i~---~~~~~ll~~~tGsGKT~~~ 153 (618)
-..=.++|+.++ +++.+.|.+++|+|||..+
T Consensus 158 ~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 158 EDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp THHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHH
T ss_pred ccccceeeeeeeeecCCcEEEEecCCCCChhHHH
Confidence 334456666544 5788999999999999754
No 478
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=35.14 E-value=16 Score=32.71 Aligned_cols=16 Identities=25% Similarity=0.015 Sum_probs=13.3
Q ss_pred CCEEEEccCCChhHHH
Q 007106 137 RDMIGRARTGTGKTLA 152 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~ 152 (618)
.-+.|.+++|||||..
T Consensus 7 ~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 7 FVIGIAGGTASGKTTL 22 (211)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 3477999999999974
No 479
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=35.11 E-value=25 Score=38.59 Aligned_cols=25 Identities=24% Similarity=0.627 Sum_probs=20.3
Q ss_pred HHHHHhCCCC--EEEEccCCChhHHHH
Q 007106 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 129 ~i~~i~~~~~--~ll~~~tGsGKT~~~ 153 (618)
.+..++++.+ ++..+.||||||.+.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5667778877 677899999999875
No 480
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=34.90 E-value=25 Score=38.87 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=15.5
Q ss_pred CCCEEEEccCCChhHHHH
Q 007106 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~ll~~~tGsGKT~~~ 153 (618)
..++|+.+|+|+|||.++
T Consensus 201 ~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 357999999999999765
No 481
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=34.77 E-value=30 Score=30.20 Aligned_cols=15 Identities=40% Similarity=0.299 Sum_probs=12.8
Q ss_pred CEEEEccCCChhHHH
Q 007106 138 DMIGRARTGTGKTLA 152 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~ 152 (618)
-+++.++.|+|||..
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 478999999999963
No 482
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=34.60 E-value=2.7e+02 Score=28.73 Aligned_cols=60 Identities=15% Similarity=0.164 Sum_probs=34.6
Q ss_pred HHHHHH---hCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEE-c-CcHHHHHHHHHHHHHh
Q 007106 128 AVLEPA---MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL-A-PTRELAKQVEKEFHES 196 (618)
Q Consensus 128 ~~i~~i---~~~~~~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil-~-Pt~~La~q~~~~l~~~ 196 (618)
++|+.+ -+++..+|.++.|+|||..++-.++ +.. .....++|+ + -...-+.++.+++.+.
T Consensus 151 kaID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~----n~~-----~~dv~~V~~~IGeR~~ev~e~~~~l~~~ 215 (513)
T 3oaa_A 151 KAVDSMIPIGRGQRELIIGDRQTGKTALAIDAII----NQR-----DSGIKCIYVAIGQKASTISNVVRKLEEH 215 (513)
T ss_dssp HHHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHH----TTS-----SSSCEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred eeeccccccccCCEEEeecCCCCCcchHHHHHHH----hhc-----cCCceEEEEEecCChHHHHHHHHHHhhc
Confidence 556554 4678999999999999975432332 211 113333322 2 2345555666677664
No 483
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=34.49 E-value=32 Score=27.08 Aligned_cols=44 Identities=11% Similarity=0.092 Sum_probs=32.9
Q ss_pred HHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCC
Q 007106 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDIS 378 (618)
Q Consensus 335 ~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~ 378 (618)
...+....+..+++|||.+-..+...+..|.+. +++..+.|++.
T Consensus 46 ~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 46 REKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 334444556779999999988888888888653 77888888854
No 484
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=34.48 E-value=21 Score=34.53 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=15.3
Q ss_pred hCCCCEEEEccCCChhHH
Q 007106 134 MQGRDMIGRARTGTGKTL 151 (618)
Q Consensus 134 ~~~~~~ll~~~tGsGKT~ 151 (618)
..+.-+.|.+|+|+|||.
T Consensus 124 ~~Ge~vaIvGpsGsGKST 141 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSM 141 (305)
T ss_dssp TTCSEEEEECSSSSSHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 355678899999999996
No 485
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=34.46 E-value=1.4e+02 Score=34.21 Aligned_cols=25 Identities=12% Similarity=0.080 Sum_probs=22.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhC
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
+.+++|+|+++.-|...++.|.+..
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~ 561 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQ 561 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhh
Confidence 5689999999999999999998764
No 486
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=34.44 E-value=36 Score=33.55 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=22.2
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEc
Q 007106 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA 180 (618)
Q Consensus 139 ~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil~ 180 (618)
+++.+..|.|||.++...+...... +.+++++-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~---------G~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEK---------GLKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHS---------SCCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHC---------CCeEEEEe
Confidence 5678899999998775554443321 55677765
No 487
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=34.35 E-value=24 Score=34.38 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=16.7
Q ss_pred CCCCEEEEccCCChhHHHHHHH
Q 007106 135 QGRDMIGRARTGTGKTLAFGIP 156 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~~~l~~ 156 (618)
.+..+++.+|+|+|||..++..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlql 143 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHAL 143 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 3445799999999999765443
No 488
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=34.31 E-value=15 Score=32.01 Aligned_cols=16 Identities=19% Similarity=0.104 Sum_probs=13.0
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
-+.|.+++|||||..+
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999743
No 489
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=33.90 E-value=26 Score=31.03 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=23.9
Q ss_pred CCCccEEEEchhhhhc--cCCcHHHHHHHHHhCCCCCcEEEEEecC
Q 007106 243 LSEVQFVVLDEADQML--SVGFAEDVEVILERLPQNRQSMMFSATM 286 (618)
Q Consensus 243 l~~~~~vViDEaH~~~--~~~~~~~~~~il~~l~~~~~~l~lSAT~ 286 (618)
..+.+++|+||+..+- +..+...+.+++.. ...+|+-|+|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeec
Confidence 4667899999987663 33344445555442 33345446665
No 490
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=33.72 E-value=22 Score=31.90 Aligned_cols=16 Identities=19% Similarity=0.223 Sum_probs=13.4
Q ss_pred CCEEEEccCCChhHHH
Q 007106 137 RDMIGRARTGTGKTLA 152 (618)
Q Consensus 137 ~~~ll~~~tGsGKT~~ 152 (618)
.-+.|.+++|||||..
T Consensus 23 ~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTL 38 (208)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4478999999999973
No 491
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=33.58 E-value=1.2e+02 Score=34.78 Aligned_cols=75 Identities=11% Similarity=-0.028 Sum_probs=49.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCC-------------------------------------CCcEEEEEcCcchhhhh
Q 007106 173 NPLCLVLAPTRELAKQVEKEFHESAP-------------------------------------SLDTICVYGGTPISHQM 215 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~-------------------------------------~~~~~~~~g~~~~~~~~ 215 (618)
..++||.|+++.-+.+.++.+.+... ...+..+|++.....+.
T Consensus 336 ~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~ 415 (997)
T 4a4z_A 336 LLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKE 415 (997)
T ss_dssp CCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHH
Confidence 45799999999999888877754211 12467788887765554
Q ss_pred HHhh----cCCCEEEEChHHHHHHHHhcCCCCCCccEEEEchh
Q 007106 216 RALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (618)
Q Consensus 216 ~~l~----~~~~Ilv~T~~~l~~~l~~~~~~l~~~~~vViDEa 254 (618)
..+. ...+|||+| +. ....+++.. ..||+...
T Consensus 416 ~v~~~F~~G~~kVLvAT-----~~-~a~GIDiP~-~~VVi~~~ 451 (997)
T 4a4z_A 416 LIEILFSKGFIKVLFAT-----ET-FAMGLNLPT-RTVIFSSI 451 (997)
T ss_dssp HHHHHHHTTCCSEEEEC-----TH-HHHSCCCCC-SEEEESCS
T ss_pred HHHHHHHCCCCcEEEEc-----hH-hhCCCCCCC-ceEEEecc
Confidence 3322 348999999 33 334567778 55555433
No 492
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=33.45 E-value=40 Score=33.38 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=13.4
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
-+.+.+++|+|||...
T Consensus 159 vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 3789999999999743
No 493
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=33.23 E-value=17 Score=33.54 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=14.5
Q ss_pred CCCCEEEEccCCChhHH
Q 007106 135 QGRDMIGRARTGTGKTL 151 (618)
Q Consensus 135 ~~~~~ll~~~tGsGKT~ 151 (618)
.+.-+.|.+|.|||||+
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 45568899999999996
No 494
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=33.20 E-value=18 Score=33.88 Aligned_cols=16 Identities=25% Similarity=0.164 Sum_probs=13.9
Q ss_pred CEEEEccCCChhHHHH
Q 007106 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~ll~~~tGsGKT~~~ 153 (618)
-+++.|++|||||..+
T Consensus 6 lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5889999999999854
No 495
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=33.12 E-value=2.3e+02 Score=24.20 Aligned_cols=63 Identities=11% Similarity=0.237 Sum_probs=45.7
Q ss_pred CCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCccEEEEcCCC
Q 007106 344 GGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELP 421 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gidi~~~~~VI~~~~p 421 (618)
...+.|.|.+..++..+.+.|.+. +++..+..... .-.-.|.|.|--...|+.+ ++||.+++.
T Consensus 61 ~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~------------~~~~~v~v~t~~~~KGlEf---~~V~~~~~~ 124 (174)
T 3dmn_A 61 RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ------------RLAPGVIVVPSFLAKGLEF---DAVIVWNAN 124 (174)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-------------CCCSSEEEEEGGGCTTCCE---EEEEEETCB
T ss_pred CCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc------------ccCCCeEEEEccccCCcCC---CEEEEecCC
Confidence 567899999999999999999764 66655554321 1124689999999999875 666766654
No 496
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=33.04 E-value=23 Score=31.28 Aligned_cols=19 Identities=16% Similarity=0.142 Sum_probs=0.0
Q ss_pred EEEEccCCChhHHHHHHHH
Q 007106 139 MIGRARTGTGKTLAFGIPI 157 (618)
Q Consensus 139 ~ll~~~tGsGKT~~~l~~~ 157 (618)
+.|.+++|||||.++-...
T Consensus 11 I~i~G~~GsGKST~~~~La 29 (203)
T 1uf9_A 11 IGITGNIGSGKSTVAALLR 29 (203)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
No 497
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=32.75 E-value=36 Score=29.10 Aligned_cols=32 Identities=16% Similarity=-0.065 Sum_probs=0.0
Q ss_pred HHHHHHHH----hCCCCEEEEccCCChhHHHHHHHH
Q 007106 126 QKAVLEPA----MQGRDMIGRARTGTGKTLAFGIPI 157 (618)
Q Consensus 126 Q~~~i~~i----~~~~~~ll~~~tGsGKT~~~l~~~ 157 (618)
+..++..+ ..+.-+.+.+|.|+|||...-..+
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~ 54 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGML 54 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHH
No 498
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=32.60 E-value=15 Score=34.25 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=0.0
Q ss_pred EEEEccCCChhHHHH
Q 007106 139 MIGRARTGTGKTLAF 153 (618)
Q Consensus 139 ~ll~~~tGsGKT~~~ 153 (618)
+++.+++|||||..+
T Consensus 35 i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEESCGGGTTHHHH
T ss_pred EEEECCCCCCHHHHH
No 499
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=32.36 E-value=38 Score=36.12 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=0.0
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEE
Q 007106 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (618)
Q Consensus 139 ~ll~~~tGsGKT~~~l~~~l~~i~~~~~~~~~~~~~~~lil 179 (618)
+++.+..|.|||.++...++..... +.++|+|
T Consensus 11 ~~~sgkGGvGKTT~a~~lA~~lA~~---------G~rVLlv 42 (589)
T 1ihu_A 11 LFFTGKGGVGKTSISCATAIRLAEQ---------GKRVLLV 42 (589)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT---------TCCEEEE
T ss_pred EEEeCCCcCHHHHHHHHHHHHHHHC---------CCcEEEE
No 500
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=32.05 E-value=44 Score=38.72 Aligned_cols=76 Identities=14% Similarity=0.147 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhccCCeEEEEecchhHHHHHHHHHHcc-CCccccccCCCHHHHHHHHHHHhcCCccEEEEc-----cccc
Q 007106 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIAT-----DVAA 404 (618)
Q Consensus 331 ~~~l~~ll~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT-----~~~~ 404 (618)
......++.....+.++||.+|++.-+..+++.+.+. -.+..++|+++ .+...+|+|+| +.+.
T Consensus 214 lva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~ 282 (1108)
T 3l9o_A 214 VVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLY 282 (1108)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHH
Q ss_pred cCCC-CCCccEEEE
Q 007106 405 RGLD-VPNVDLIIH 417 (618)
Q Consensus 405 ~Gid-i~~~~~VI~ 417 (618)
.+-. +.++.+||+
T Consensus 283 ~~~~~l~~l~lVVI 296 (1108)
T 3l9o_A 283 RGSEVMREVAWVIF 296 (1108)
T ss_dssp HCSSHHHHEEEEEE
T ss_pred cCccccccCCEEEE
Done!