BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007110
(618 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 9/93 (9%)
Query: 16 DYFSPNKAYKPKMWTEAWTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGG 75
++F + P M E W GW+ + P+ R ++LA +V + +++G IN YM+HGG
Sbjct: 223 EFFDEHGKKWPLMCMEFWDGWFNRWKEPIITRDPKELADAVREVLEQGS--INLYMFHGG 280
Query: 76 TNFGR----TAGGPFI---ATSYDYDAPLDEYG 101
TNFG +A G TSYDYDA LDE G
Sbjct: 281 TNFGFMNGCSARGTLDLPQVTSYDYDALLDEEG 313
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 104/262 (39%), Gaps = 68/262 (25%)
Query: 248 YLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEG 307
YL Y T+ D E LR ++ ++V+GQ T Y + E + F +G
Sbjct: 385 YLLYRTETNWDAEEERLR--------IIDGRDRAQLYVDGQWVKTQYQT-EIGEDIFYQG 435
Query: 308 VNMRAGINKIALLSIAVGLPNVGPHF--ETWNAGVLGPV--TLNGLNEGRRDLSWQKWTY 363
+ G++++ +L +G N G F +T G+ V L+ L L+W+ Y
Sbjct: 436 --KKKGLSRLDILIENMGRVNYGHKFLADTQRKGIRTGVCKDLHFL------LNWKH--Y 485
Query: 364 KIGLEG-EKLNLHSLSGGSSVEWAEGSLVAQRQPLTW-YRTTFSAPAGNAPLALDMGSMG 421
+ L+ EK++ S W +G QP + Y T P LD+ G
Sbjct: 486 PLPLDNPEKIDF-------SKGWTQG------QPAFYAYDFTVEEPKDTY---LDLSEFG 529
Query: 422 KGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPT 481
KG +VNGQ++GR W N G ++P S+LK
Sbjct: 530 KGVAFVNGQNLGRFW-------------------------NVGPTLS--LYIPHSYLKEG 562
Query: 482 GNLLVVFEEWGGNPNGISLVRR 503
N +++FE G I L R+
Sbjct: 563 ANRIIIFETEGQYKEEIHLTRK 584
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 79/174 (45%), Gaps = 20/174 (11%)
Query: 26 PKMWTEAWTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFG--RTAG 83
P + +E +TGW +G P E +A S+ + +G S +N YM+ GGTNF A
Sbjct: 240 PLINSEFYTGWLDHWGQPHSTIKTEAVASSLYDILARGAS-VNLYMFIGGTNFAYWNGAN 298
Query: 84 GPFIA--TSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALVSGNPTVMPLGNYQEA 141
P+ A TSYDYDAPL E G L + + + + K+ E + P P Y +
Sbjct: 299 SPYAAQPTSYDYDAPLSEAGDLTEKYFALRNIIQKFEKVPEGPI----PPSTPKFAYGKV 354
Query: 142 HVFKSKSACAAF--------LANYNQRTFAKVAFGNQHYNLPPWSISILPDCKN 187
+ K K+ AA + + TF +V QHY + ++ DC N
Sbjct: 355 TLEKLKTVGAALDILCPSGPIKSLYPLTFIQV---KQHYGFVLYRTTLPQDCSN 405
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 375 HSLSGGSSVEWAEGSLVAQRQPLTWYRTTFSAPAGNAPLALD----MGSMGKGQVWVNGQ 430
H SG WA S + +Y FS P+G L D KGQVW+NG
Sbjct: 506 HRDSGHHDEAWAHNS--SNYTLPAFYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGF 563
Query: 431 SIGRHWPA 438
++GR+WPA
Sbjct: 564 NLGRYWPA 571
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 26 PKMWTEAWTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGP 85
P +E W+GW+ +G R E+L + + + SF + Y HGGT+FG G
Sbjct: 234 PLXCSEFWSGWFDHWGAKHETRSAEELVKGXKEXLDRNISF-SLYXTHGGTSFGHWGGAN 292
Query: 86 F-----IATSYDYDAPLDEYGLLRQPKWGHLKDL 114
F TSYDYDAP++E G + PK+ +++L
Sbjct: 293 FPNFSPTCTSYDYDAPINESGKV-TPKYLEVRNL 325
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 89/248 (35%), Gaps = 55/248 (22%)
Query: 266 SGNYPVLTVMSAGHALHVFVNGQLAGT-----AYGSLEFPKLTFTEGVNMRAGINKIALL 320
S L + A VF+NG+ T G ++ P L EG +++ +L
Sbjct: 394 SDKEQTLLITEAHDWAQVFLNGKKLATLSRLKGEGVVKLPPLK--EG-------DRLDIL 444
Query: 321 SIAVGLPNVGPHFETWNAGVLGPVTLNGLNEGRRDLSWQKWTYKIGLEGEKLNLHSLSGG 380
A G N G W G+ V L WQ +T + +S +
Sbjct: 445 VEAXGRXNFGKGIYDWK-GITEKVELQSDKGVELVKDWQVYTIPVD--------YSFARD 495
Query: 381 SSVEWAEGSLVAQRQPLTWYRTTFSAPAGNAPLALDMGSMGKGQVWVNGQSIGRHWPAYK 440
+ E A+ QP +YR+TF+ L+ + KG VWVNG +IGR+W
Sbjct: 496 KQYKQQEN---AENQP-AYYRSTFNLNELGDTF-LNXXNWSKGXVWVNGHAIGRYWEI-- 548
Query: 441 ASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWGGNPNGISL 500
Q+ +VP WLK N +++ + G +
Sbjct: 549 -------------------------GPQQTLYVPGCWLKKGENEIIILDXAGPSKAETEG 583
Query: 501 VRREIDSV 508
+R+ I V
Sbjct: 584 LRQPILDV 591
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
Query: 51 DLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGH 110
D +F VA F+N YM GGTN+G G P TSYDY + + E + + K+
Sbjct: 292 DFSFGVA--------FLNLYMIFGGTNWGNL-GHPGGYTSYDYGSAISESRNITREKYSE 342
Query: 111 LKDLHRAIKLCEPALVSGNPTVMPLGNY 138
LK L K+ P + NP + Y
Sbjct: 343 LKLLGNFAKVS-PGYLVANPGDLSTSTY 369
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 60 IQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIK 119
+ G + N YM GGTN+G G P TSYDY A + E + + K+ LK + +K
Sbjct: 312 MAAGVTIFNIYMTFGGTNWGNL-GHPGGYTSYDYGASIREDRRIDREKYSELKLQGQFLK 370
Query: 120 LCEPALVSGNPTVMPLGNYQEAH 142
+ P ++ P G Y ++
Sbjct: 371 VS-PGYITATPENATQGVYSDSQ 392
>pdb|2OAS|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coenzyme A
Transferase (Atoa) In Complex With Coa From Shewanella
Oneidensis, Northeast Structural Genomics Target Sor119.
pdb|2OAS|B Chain B, Crystal Structure Of 4-Hydroxybutyrate Coenzyme A
Transferase (Atoa) In Complex With Coa From Shewanella
Oneidensis, Northeast Structural Genomics Target Sor119
Length = 436
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 4/114 (3%)
Query: 261 EGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKI--A 318
+GF+ + + SA +H F G A G + +G ++ GI I A
Sbjct: 160 DGFIHIDRFAAVYEQSASLPIHSFATGDAVSLAIG--QHVAELVRDGDCLQXGIGAIPDA 217
Query: 319 LLSIAVGLPNVGPHFETWNAGVLGPVTLNGLNEGRRDLSWQKWTYKIGLEGEKL 372
+LS G ++G H E ++ G+L V +N ++ K L +KL
Sbjct: 218 VLSCLTGHKDLGVHTELFSDGILQLVEKGVINNTKKRFYPGKLVTGFALGSQKL 271
>pdb|2JX9|A Chain A, Solution Structure Of The Gal_lectin Domain Of Mouse
Latrophilin-1 Gpcr
pdb|2JXA|A Chain A, Mouse Latrophilin-1 Gpcr Gal_lectin Domain In Complex With
Rhamnose
Length = 106
Score = 32.0 bits (71), Expect = 0.98, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 544 PGQKIKSIKFASFG-TPEGVCGS----YRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEM 598
PG + ++ A++G T + +C + C+ ++ + C + C V +
Sbjct: 23 PGSDVIMVENANYGRTDDKICDADPFQMENVQCYLPDAFKIMSQRCNNRTQCVVVAGSDA 82
Query: 599 FGGDPCPSIMKQLAVEAIC 617
F DPCP K L V+ C
Sbjct: 83 FP-DPCPGTYKYLEVQYDC 100
>pdb|1ICH|A Chain A, Solution Structure Of The Tumor Necrosis Factor Receptor-1
Death Domain
Length = 112
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 343 PVTLNGLNEGRRDLSWQKWTYKIGLEGEKLNLHSLSGGSSVEWAEGSLVAQRQPLTWYRT 402
P TL + E L W+++ ++GL +++ L G + A+ S++A TW R
Sbjct: 13 PATLYAVVENVPPLRWKEFVKRLGLSDHEIDRLELQNGRCLREAQYSMLA-----TWRRR 67
Query: 403 TFSAPAGNAPLAL 415
T P A L L
Sbjct: 68 T---PRREATLEL 77
>pdb|4DQA|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacova_03559)
From Bacteroides Ovatus Atcc 8483 At 1.50 A Resolution
Length = 355
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 467 SQRWYHVPRSWLKPTGN--LLVVFEEWGGNPNGIS 499
+ RWYHV ++ +PTG + V E+W G+ GI
Sbjct: 220 TNRWYHVALTYDQPTGKTGIYVNGEKWAGSDWGID 254
>pdb|3CXM|A Chain A, Leishmania Naiffi Uracil-Dna Glycosylase In Complex With
5-Bromouracil
Length = 268
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 458 KCLSNCGEASQRWYHVPRSWLKP 480
+C S C EA QR H+P W P
Sbjct: 240 RCFSACNEALQRMSHLPMHWQLP 262
>pdb|3GM8|A Chain A, Crystal Structure Of A Beta-glycosidase From Bacteroides
Vulgatus
Length = 801
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 383 VEWAEGSLVAQRQPLTWYRTTFSAPA---GNAPLALDMGSMGKGQVWVNGQSIGRH 435
+W G L A ++WYR TF+ P+ L G +VW+NG +G+
Sbjct: 56 TDWQSGFLPAG---ISWYRKTFTIPSKWKNKKVQILFEGVYLNSEVWINGHWLGKR 108
>pdb|1CQA|A Chain A, Birch Pollen Profilin
Length = 133
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 356 LSWQKWTYK-----IGLEGEKLNLHSLSGGSSVEWAEGSLVAQRQP--LTWYRTTFSAPA 408
+SWQ + + I +GE+L ++ G WA+ S Q +P +T F P
Sbjct: 1 MSWQTYVDEHLMCDIDGQGEELAASAIVGHDGSVWAQSSSFPQFKPQEITGIMKDFEEPG 60
Query: 409 GNAPLALDMGSM 420
AP L +G +
Sbjct: 61 HLAPTGLHLGGI 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,602,253
Number of Sequences: 62578
Number of extensions: 1005867
Number of successful extensions: 2164
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2145
Number of HSP's gapped (non-prelim): 20
length of query: 618
length of database: 14,973,337
effective HSP length: 105
effective length of query: 513
effective length of database: 8,402,647
effective search space: 4310557911
effective search space used: 4310557911
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)