Query 007110
Match_columns 618
No_of_seqs 280 out of 1267
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 19:03:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007110.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007110hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 6E-160 1E-164 1352.2 56.0 610 5-618 229-840 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 1.3E-97 3E-102 815.0 31.7 429 5-514 217-648 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 5.1E-30 1.1E-34 270.8 2.9 110 6-117 197-318 (319)
4 PF02140 Gal_Lectin: Galactose 99.8 1.9E-20 4.1E-25 159.1 4.4 76 540-617 1-80 (80)
5 KOG4729 Galactoside-binding le 99.8 1E-18 2.2E-23 174.6 7.8 85 532-617 40-129 (265)
6 PF13364 BetaGal_dom4_5: Beta- 99.1 3.2E-10 6.9E-15 102.5 7.1 69 394-488 33-104 (111)
7 PF13364 BetaGal_dom4_5: Beta- 98.7 1.3E-07 2.8E-12 85.6 10.3 84 236-326 24-110 (111)
8 PF02837 Glyco_hydro_2_N: Glyc 98.4 2E-06 4.2E-11 82.3 10.7 100 242-347 63-164 (167)
9 COG1874 LacA Beta-galactosidas 97.2 0.00012 2.6E-09 84.5 0.9 78 26-104 238-333 (673)
10 PRK10150 beta-D-glucuronidase; 97.1 0.0031 6.6E-08 73.0 11.2 100 244-349 62-179 (604)
11 PF02837 Glyco_hydro_2_N: Glyc 96.9 0.0014 3E-08 62.6 5.8 67 394-488 66-136 (167)
12 PRK10340 ebgA cryptic beta-D-g 96.8 0.0049 1.1E-07 75.4 10.3 97 247-349 109-206 (1021)
13 PRK09525 lacZ beta-D-galactosi 96.5 0.0098 2.1E-07 72.8 10.3 95 246-349 119-218 (1027)
14 PRK10340 ebgA cryptic beta-D-g 94.3 0.11 2.4E-06 63.9 8.0 66 395-488 108-176 (1021)
15 PRK09525 lacZ beta-D-galactosi 92.9 0.15 3.3E-06 62.7 6.0 40 395-434 119-162 (1027)
16 PRK10150 beta-D-glucuronidase; 92.4 0.36 7.9E-06 56.0 8.1 42 395-436 64-108 (604)
17 PF02449 Glyco_hydro_42: Beta- 85.4 2.7 5.9E-05 45.7 7.9 87 22-120 286-373 (374)
18 PF06832 BiPBP_C: Penicillin-B 79.0 3.5 7.5E-05 35.4 4.7 50 270-327 34-84 (89)
19 PF14683 CBM-like: Polysacchar 77.6 2.4 5.3E-05 41.2 3.6 63 419-492 91-153 (167)
20 PF08531 Bac_rhamnosid_N: Alph 73.6 21 0.00045 34.7 9.0 56 270-326 6-68 (172)
21 PF11324 DUF3126: Protein of u 68.3 12 0.00026 30.7 4.9 30 276-305 25-56 (63)
22 PLN03059 beta-galactosidase; P 64.0 25 0.00055 42.4 8.6 70 394-490 468-545 (840)
23 PF08308 PEGA: PEGA domain; I 63.3 8.1 0.00018 31.5 3.2 45 271-327 3-47 (71)
24 PF08531 Bac_rhamnosid_N: Alph 62.3 10 0.00022 36.9 4.2 54 414-489 7-63 (172)
25 KOG2024 Beta-Glucuronidase GUS 60.9 14 0.00031 38.5 5.0 62 233-295 71-135 (297)
26 KOG0496 Beta-galactosidase [Ca 56.9 2.9 6.3E-05 48.4 -0.7 60 541-600 331-390 (649)
27 PF11875 DUF3395: Domain of un 54.4 9.7 0.00021 36.5 2.5 16 602-617 116-133 (151)
28 PF07691 PA14: PA14 domain; I 49.6 83 0.0018 28.6 7.9 70 248-325 47-122 (145)
29 COG2884 FtsE Predicted ATPase 30.7 37 0.0008 34.2 2.4 25 535-560 133-157 (223)
30 smart00758 PA14 domain in bact 26.8 2.2E+02 0.0047 25.8 6.8 63 249-320 46-109 (136)
31 PF11008 DUF2846: Protein of u 26.3 1.1E+02 0.0025 27.5 4.7 33 280-319 42-74 (117)
32 PF03422 CBM_6: Carbohydrate b 25.1 2.7E+02 0.0058 24.7 6.9 45 279-323 60-110 (125)
33 PF12733 Cadherin-like: Cadher 24.8 1.7E+02 0.0038 24.5 5.3 56 251-323 16-72 (88)
34 KOG4729 Galactoside-binding le 23.9 1.1E+02 0.0023 32.0 4.4 77 539-617 146-230 (265)
35 cd02848 Chitinase_N_term Chiti 20.9 3.8E+02 0.0083 24.3 6.8 48 275-325 45-93 (106)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=5.9e-160 Score=1352.16 Aligned_cols=610 Identities=73% Similarity=1.311 Sum_probs=561.5
Q ss_pred cceeccCCcccCccCCCCCCCCeeeeEeccccccccCCCCCCCCHHHHHHHHHHHHHhCCceeeeeEeeccCCCCCCCCC
Q 007110 5 QQINTCNGFYCDYFSPNKAYKPKMWTEAWTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGG 84 (618)
Q Consensus 5 ~~i~tcn~~~~~~~~~~~p~~P~~~~E~~~GWf~~WG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~ 84 (618)
+||+||||++|+.|.+.++.+|+||||||+|||+|||++++.|+++|++.++++||++|+|++|||||||||||||||||
T Consensus 229 ~v~~t~Ng~~~~~f~~~~~~~P~m~tE~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga 308 (840)
T PLN03059 229 PVIDTCNGFYCENFKPNKDYKPKMWTEAWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGG 308 (840)
T ss_pred cceecCCCchhhhcccCCCCCCcEEeccCchhHhhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCC
Confidence 68999999999999998888999999999999999999999999999999999999999998899999999999999999
Q ss_pred CCccccccCCCCcccCCCCCChhHHHHHHHHHHHHhccccccCCCCcccCCCCcceeeeeccccchhhhhhccccccceE
Q 007110 85 PFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALVSGNPTVMPLGNYQEAHVFKSKSACAAFLANYNQRTFAK 164 (618)
Q Consensus 85 ~~~~TSYDY~Apl~E~G~~~~~Ky~~lr~~~~~i~~~~~~l~~~~p~~~~l~~~~~~~~Y~~~~~~~~fl~n~~~~~~~~ 164 (618)
++++|||||||||+|+|++|+|||.+||++|++++.++++|+..+|....||+++++++|+..+.|+||+.|++++.+.+
T Consensus 309 ~~~~TSYDYdAPL~E~G~~t~pKy~~lr~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~y~~~~~caaFl~n~~~~~~~~ 388 (840)
T PLN03059 309 PFIATSYDYDAPLDEYGLPREPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKSKSACAAFLANYDTKYSVK 388 (840)
T ss_pred CccccccccCCccccccCcchhHHHHHHHHHHHHHhcCccccCCCCceeccCCceeEEEccCccchhhheeccCCCCcee
Confidence 99999999999999999996579999999999999999888888888889999999999985548999999999889999
Q ss_pred EEeCCccccCCCcceeecCCCCccccccceeccccccccccccCCCCCCCcccccCC-CccCCCCCcccCchhhhhcCCC
Q 007110 165 VAFGNQHYNLPPWSISILPDCKNTVYNTARVGHQSTQMKMTPVPIHGGFSWQAFNEV-PSAYGDSSFTMSGLLEQINTTR 243 (618)
Q Consensus 165 v~~~~~~~~lp~~sv~il~d~~~v~f~t~~v~~~~~~~~~~~~~~~~~~~w~~~~e~-~~~~~~~~~~~~~~~Eql~~t~ 243 (618)
|.|+|++|.||+|||||||||+++||||+++++|++.+++.+.. ..+.|+++.|+ .+...+.+++...++||+++|+
T Consensus 389 v~f~g~~y~lp~~Svsilpd~~~~lfnta~v~~q~~~~~~~~~~--~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~ 466 (840)
T PLN03059 389 VTFGNGQYDLPPWSVSILPDCKTAVFNTARLGAQSSQMKMNPVG--STFSWQSYNEETASAYTDDTTTMDGLWEQINVTR 466 (840)
T ss_pred EEECCcccccCccceeecccccceeeeccccccccceeeccccc--ccccceeecccccccccCCCcchhhHHHhhcccC
Confidence 99999999999999999999999999999999998777554433 56699999999 4444566788889999999999
Q ss_pred CCcceEEEEEEecCCCCCccccCCCcceEEecCcCeEEEEEECCEEEEEEecccCCCeeEEEeeeeccCCCcEEEEEEEe
Q 007110 244 DATDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIALLSIA 323 (618)
Q Consensus 244 d~~Gyl~Yrt~i~~~~~~~~~~~~~~~~L~v~~~~D~a~VfvnG~~vGt~~~~~~~~~~~~~~~~~l~~g~n~L~ILven 323 (618)
|.+||+||||+|....++..++.+.+++|+|.+++|++||||||+++|+.++......+.++.+++++.|.|+|+|||||
T Consensus 467 d~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~ 546 (840)
T PLN03059 467 DATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVA 546 (840)
T ss_pred CCCceEEEEEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEe
Confidence 99999999999988766655567778899999999999999999999999997766678888778888999999999999
Q ss_pred cCCccccCCCCcccceeeccEEEccccCCcccCccCCcEEEcCCCccccccccCCCCCCCccccCCcccCCCCceEEEEE
Q 007110 324 VGLPNVGPHFETWNAGVLGPVTLNGLNEGRRDLSWQKWTYKIGLEGEKLNLHSLSGGSSVEWAEGSLVAQRQPLTWYRTT 403 (618)
Q Consensus 324 ~Gr~NyG~~~~~~~kGI~G~V~l~g~~~~~~~L~~~~W~~~~~L~ge~~~~~~~~~~~~~~W~~~~~~~~~~~~~wYr~~ 403 (618)
|||+|||++|+++.|||+|+|+|++.++++++|+++.|.|+++|.||.++++.+++...++|...+..+..++|+|||++
T Consensus 547 vG~~NyG~~le~~~kGI~g~V~i~g~~~g~~dls~~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~~~p~twYK~~ 626 (840)
T PLN03059 547 VGLPNVGLHFETWNAGVLGPVTLKGLNEGTRDLSGWKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQKQPLTWYKTT 626 (840)
T ss_pred CCCCccCcccccccccccccEEEecccCCceecccCccccccCccceeccccccCCCCCccccccccccCCCCceEEEEE
Confidence 99999999999999999999999998888889998889999999999999987755567889776444445679999999
Q ss_pred EECCCCCCCeEEeeCCcceEEEEECCeeccccccccc-cCCCCCccccccccccccccCCCCCCceeEEecCCCcccCCC
Q 007110 404 FSAPAGNAPLALDMGSMGKGQVWVNGQSIGRHWPAYK-ASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTG 482 (618)
Q Consensus 404 F~~p~~~dp~~Ld~~g~gKG~vwVNG~nlGRYW~~~~-~~G~~~~c~~~G~~~~~~~~~~cg~PQqtlYhVP~~~Lk~g~ 482 (618)
|++|++.|||||||++||||+|||||+||||||+.+. ..|| +.|||+|.|++.||+||||+|||+|||||++|||+|+
T Consensus 627 Fd~p~g~Dpv~LDm~gmGKG~aWVNG~nIGRYW~~~a~~~gC-~~c~y~g~~~~~kc~~~cggP~q~lYHVPr~~Lk~g~ 705 (840)
T PLN03059 627 FDAPGGNDPLALDMSSMGKGQIWINGQSIGRHWPAYTAHGSC-NGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLKPSG 705 (840)
T ss_pred EeCCCCCCCEEEecccCCCeeEEECCcccccccccccccCCC-ccccccccccchhhhccCCCceeEEEeCcHHHhccCC
Confidence 9999999999999999999999999999999997643 2566 8899999999999999999999999999999999999
Q ss_pred ceEEEEEecCCCCCceEEEeecchhhcccccccCccccccccccCCCCCCCCCCceEEecCCCCeEEEEeeeccCCCCCC
Q 007110 483 NLLVVFEEWGGNPNGISLVRREIDSVCAYMYEWQPTLINWQLHASGKVNKPLRPKAHLMCGPGQKIKSIKFASFGTPEGV 562 (618)
Q Consensus 483 N~ivifEe~g~~p~~i~~~~~~~~~~c~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~L~C~~G~~I~~I~~A~yGr~~~~ 562 (618)
|+||||||+|++|..|+|.++.++++|++++|.|| +|++|++.+....+...+.++|+||.|++|++|+||+||||.++
T Consensus 706 N~lViFEe~gg~p~~I~~~~~~~~~~c~~~~e~~p-~~~~w~~~~~~~~~~~~~~~~L~C~~G~~Is~I~fAsYGrp~gt 784 (840)
T PLN03059 706 NLLIVFEEWGGNPAGISLVKRTTDSVCADIFEGQP-ALKNWQIIASGKVNSLQPKAHLWCPPGQKISKIKFASFGVPQGT 784 (840)
T ss_pred ceEEEEEecCCCCCceEEEEeecCcccccccccCC-ccccccccccccccccCCcEEEECCCCceEEEEEEecCCCCCCC
Confidence 99999999999999999999999999999999995 69999996554434678899999999999988999999999999
Q ss_pred CCCccCCceecCChHHHHHhhcCCCCcceEEecCCCCCCCCCCCCceeEEEEEEeC
Q 007110 563 CGSYRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFGGDPCPSIMKQLAVEAICG 618 (618)
Q Consensus 563 C~~~~~~~C~~~~s~~~V~~~C~Gk~~C~v~a~~~~Fg~DPC~gt~KyL~v~y~C~ 618 (618)
|+++++++|++++|+++|+++|+||++|+|.|++.+||+|||+||+|||+|+|.|+
T Consensus 785 C~~~~~g~C~a~~S~~vV~kaC~Gk~~CsV~asn~~FggDPC~gt~KyL~V~~~Cs 840 (840)
T PLN03059 785 CGSFREGSCHAHKSYDAFERNCIGKQSCSVTVAPEVFGGDPCPDSMKKLSVEAVCS 840 (840)
T ss_pred CCCCCCCCEeCCcHHHHHHHHCCCCCceEEEeccceecCCCCCCceeEEEEEEEeC
Confidence 99999999999999999999999999999999999997799999999999999996
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-97 Score=814.95 Aligned_cols=429 Identities=61% Similarity=1.084 Sum_probs=386.5
Q ss_pred cceeccCCccc-CccC-CCCCCCCeeeeEeccccccccCCCCCCCCHHHHHHHHHHHHHhCCceeeeeEeeccCCCCCCC
Q 007110 5 QQINTCNGFYC-DYFS-PNKAYKPKMWTEAWTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTA 82 (618)
Q Consensus 5 ~~i~tcn~~~~-~~~~-~~~p~~P~~~~E~~~GWf~~WG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~ 82 (618)
++||||||++| +.|. +++|++|+||||||+|||++||++++.|++|+++..+++|+++|+|++||||||||||||++|
T Consensus 217 ~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~wGg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~ 296 (649)
T KOG0496|consen 217 PGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHWGGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTN 296 (649)
T ss_pred ccccccCCccchhhhccCCCCCCCceecccccchhhhhCCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCccc
Confidence 57999999999 9999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCCCCcccCCCCCChhHHHHHHHHHHHHhccccccCCCCcccCCCCcceeeeeccccchhhhhhccccccc
Q 007110 83 GGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALVSGNPTVMPLGNYQEAHVFKSKSACAAFLANYNQRTF 162 (618)
Q Consensus 83 G~~~~~TSYDY~Apl~E~G~~~~~Ky~~lr~~~~~i~~~~~~l~~~~p~~~~l~~~~~~~~Y~~~~~~~~fl~n~~~~~~ 162 (618)
| ++.+|||||||||| |..++|||.|+|.+|..|..+++.+.+++++..++|+.+ +.|++|+.|++....
T Consensus 297 G-~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~~ep~lv~gd~~~~kyg~~~--------~~C~~Fl~n~~~~~~ 365 (649)
T KOG0496|consen 297 G-PFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDYCEPALVAGDITTAKYGNLR--------EACAAFLSNNNGAPA 365 (649)
T ss_pred C-cccccccccccccc--hhhcCCCccccccchhhhhhcCccccccCcccccccchh--------hHHHHHHhcCCCCCC
Confidence 8 99999999999999 999999999999999999999999888876654544332 269999999998889
Q ss_pred eEEEeCCccccCCCcceeecCCCCccccccceeccccccccccccCCCCCCCcccccCCCccCCCCCcccCchhhhhcCC
Q 007110 163 AKVAFGNQHYNLPPWSISILPDCKNTVYNTARVGHQSTQMKMTPVPIHGGFSWQAFNEVPSAYGDSSFTMSGLLEQINTT 242 (618)
Q Consensus 163 ~~v~~~~~~~~lp~~sv~il~d~~~v~f~t~~v~~~~~~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~~~~Eql~~t 242 (618)
+.+.|++.+|.+|+|+|+|||||++++|||+++..+ |....||++ +|..++
T Consensus 366 ~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~~----------------~~~~~e~~~------------~~~~~~- 416 (649)
T KOG0496|consen 366 APVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMAQ----------------WISFTEPIP------------SEAVGQ- 416 (649)
T ss_pred CccccCCCccccCceeEEechhhcchhhhccccccc----------------cccccCCCc------------cccccC-
Confidence 999999999999999999999999999999966433 555566654 577766
Q ss_pred CCCcceEEEEEEecCCCCCccccCCCcceEEec-CcCeEEEEEECCEEEEEEecccCCCeeEEEeeeeccCCCcEEEEEE
Q 007110 243 RDATDYLWYMTDVKIDPSEGFLRSGNYPVLTVM-SAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIALLS 321 (618)
Q Consensus 243 ~d~~Gyl~Yrt~i~~~~~~~~~~~~~~~~L~v~-~~~D~a~VfvnG~~vGt~~~~~~~~~~~~~~~~~l~~g~n~L~ILv 321 (618)
.+||++|++.++.+.+++ ..|+|. +++|++||||||+++|+.+++.....+.+..++.|+.|.|+|+|||
T Consensus 417 --~~~~ll~~~~~t~d~sd~-------t~~~i~ls~g~~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~ 487 (649)
T KOG0496|consen 417 --SFGGLLEQTNLTKDKSDT-------TSLKIPLSLGHALHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLS 487 (649)
T ss_pred --cceEEEEEEeeccccCCC-------ceEeecccccceEEEEECCEEeeeEeccccceeEEeecccccccCcceEEEEE
Confidence 788999999998776652 468888 9999999999999999999987666788888888999999999999
Q ss_pred EecCCccccCCCCcccceeeccEEEccccCCcccCccCCcEEEcCCCccccccccCCCCCCCccccCCcccCCCCceEEE
Q 007110 322 IAVGLPNVGPHFETWNAGVLGPVTLNGLNEGRRDLSWQKWTYKIGLEGEKLNLHSLSGGSSVEWAEGSLVAQRQPLTWYR 401 (618)
Q Consensus 322 en~Gr~NyG~~~~~~~kGI~G~V~l~g~~~~~~~L~~~~W~~~~~L~ge~~~~~~~~~~~~~~W~~~~~~~~~~~~~wYr 401 (618)
||+||+||| +++++.|||+|+|+|+|. ++++.+.|.|+++|.||....+.+++..+++|......+..+|.+||+
T Consensus 488 ~~~G~~n~G-~~e~~~~Gi~g~v~l~g~----~~l~~~~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~k~P~~w~k 562 (649)
T KOG0496|consen 488 ENVGLPNYG-HFENDFKGILGPVYLNGL----IDLTWTKWPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTATKQPLTWYK 562 (649)
T ss_pred EecCCCCcC-cccccccccccceEEeee----eccceeecceecccccchhhccccccccccceeeccCcccCCCeEEEE
Confidence 999999999 789999999999999987 578767788999999999999998888889998876544447899999
Q ss_pred EEEECCCCCCCeEEeeCCcceEEEEECCeeccccccccccCCCCCccccccccccccccCCCCCCceeEEecCCCcccCC
Q 007110 402 TTFSAPAGNAPLALDMGSMGKGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPT 481 (618)
Q Consensus 402 ~~F~~p~~~dp~~Ld~~g~gKG~vwVNG~nlGRYW~~~~~~G~~~~c~~~G~~~~~~~~~~cg~PQqtlYhVP~~~Lk~g 481 (618)
+|++|++.+||+|||.|||||+|||||+|||||||++ | ||++| |||++|||++
T Consensus 563 -~f~~p~g~~~t~Ldm~g~GKG~vwVNG~niGRYW~~~------------G-------------~Q~~y-hvPr~~Lk~~ 615 (649)
T KOG0496|consen 563 -TFDIPSGSEPTALDMNGWGKGQVWVNGQNIGRYWPSF------------G-------------PQRTY-HVPRSWLKPS 615 (649)
T ss_pred -EecCCCCCCCeEEecCCCcceEEEECCcccccccCCC------------C-------------CceEE-ECcHHHhCcC
Confidence 9999999999999999999999999999999999974 6 97665 5999999999
Q ss_pred CceEEEEEecCCCCCceEEEeecchhhcccccc
Q 007110 482 GNLLVVFEEWGGNPNGISLVRREIDSVCAYMYE 514 (618)
Q Consensus 482 ~N~ivifEe~g~~p~~i~~~~~~~~~~c~~~~~ 514 (618)
.|.||||||++++|..|+|+++.+..+|..+++
T Consensus 616 ~N~lvvfEee~~~p~~i~~~~~~~~~~~~~v~~ 648 (649)
T KOG0496|consen 616 GNLLVVFEEEGGDPNGISFVTRPVLSTCAYVRE 648 (649)
T ss_pred CceEEEEEeccCCCccceEEEeEeeeEeeeccc
Confidence 999999999999999999999999988888764
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=99.95 E-value=5.1e-30 Score=270.79 Aligned_cols=110 Identities=47% Similarity=0.881 Sum_probs=81.0
Q ss_pred ceeccCCcccCcc--------CCCCCCCCeeeeEeccccccccCCCCCCCCHHHHHHHHHHHHHhCCceeeeeEeeccCC
Q 007110 6 QINTCNGFYCDYF--------SPNKAYKPKMWTEAWTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTN 77 (618)
Q Consensus 6 ~i~tcn~~~~~~~--------~~~~p~~P~~~~E~~~GWf~~WG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTN 77 (618)
+|.+|+++.|.+. .+.+|++|+|++|||+|||++||++++.+++++++..++++++.|.+ +||||||||||
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~-~nyYM~hGGTN 275 (319)
T PF01301_consen 197 DIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWGGWFDHWGGPHYTRPAEDVAADLARMLSKGNS-LNYYMFHGGTN 275 (319)
T ss_dssp SCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEESS---BTTS--HHHHHHHHHHHHHHHHHHCSE-EEEEECE--B-
T ss_pred eEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEeccccccccCCCCccCCHHHHHHHHHHHHHhhcc-cceeeccccCC
Confidence 3788999999653 35679999999999999999999999999999999999999999966 79999999999
Q ss_pred CCCCCCCCCc----cccccCCCCcccCCCCCChhHHHHHHHHHH
Q 007110 78 FGRTAGGPFI----ATSYDYDAPLDEYGLLRQPKWGHLKDLHRA 117 (618)
Q Consensus 78 fG~~~G~~~~----~TSYDY~Apl~E~G~~~~~Ky~~lr~~~~~ 117 (618)
||+++|++.. +|||||+|||+|+|++ +|||.+||+||++
T Consensus 276 fG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~lr~l~~~ 318 (319)
T PF01301_consen 276 FGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYELRRLHQK 318 (319)
T ss_dssp -TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHHHHHHHHT
T ss_pred ccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHHHHHHHhc
Confidence 9999987654 5999999999999999 5999999999975
No 4
>PF02140 Gal_Lectin: Galactose binding lectin domain; InterPro: IPR000922 The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity []. The sea urchin egg lectin (SUEL) forms a new class of lectins. Although SUEL was first isolated as a D-galactoside binding lectin, it was latter shown that it bind to L-rhamnose preferentially [, ]. L-rhamnose and D-galactose share the same hydroxyl group orientation at C2 and C4 of the pyranose ring structure. A cysteine-rich domain homologous to the SUEL protein has been identified in the following proteins [, , ]: Plant beta-galactosidases (3.2.1.23 from EC) (lactases). Mammalian latrophilin, the calcium independent receptor of alpha-latrotoxin (CIRL). The galactose-binding lectin domain is not required for alpha-latratoxin binding []. Human lectomedin-1. Rhamnose-binding lectin (SAL) from catfish (Silurus asotus, Namazu) eggs. This protein is composed of three tandem repeat domains homologous to the SUEL lectin domain. All cysteine positions of each domain are completely conserved []. The hypothetical B0457.1, F32A7.3A and F32A7.3B proteins from Caenorhabditis elegans. The human KIAA0821 protein. ; GO: 0005529 sugar binding; PDB: 2JXA_A 2JX9_A 2ZX2_A 2ZX3_B 2ZX0_B 2ZX1_B 2ZX4_B.
Probab=99.80 E-value=1.9e-20 Score=159.12 Aligned_cols=76 Identities=36% Similarity=0.726 Sum_probs=60.7
Q ss_pred EecCCCCeEEEEeeeccCCCC-CCCCCc---cCCceecCChHHHHHhhcCCCCcceEEecCCCCCCCCCCCCceeEEEEE
Q 007110 540 LMCGPGQKIKSIKFASFGTPE-GVCGSY---RQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFGGDPCPSIMKQLAVEA 615 (618)
Q Consensus 540 L~C~~G~~I~~I~~A~yGr~~-~~C~~~---~~~~C~~~~s~~~V~~~C~Gk~~C~v~a~~~~Fg~DPC~gt~KyL~v~y 615 (618)
|+||+|+.| .|.+|+|||+. .+|+.. ...+|+++.++++|+++|+||++|.|.+++.+|| |||||+.|||+|+|
T Consensus 1 L~C~~g~~I-~I~~A~YGR~~~~~C~~~~~~~~~~C~~~~~~~~v~~~C~g~~~C~v~~~~~~f~-dpC~~~~KyL~V~Y 78 (80)
T PF02140_consen 1 LSCPPGKVI-SIDSAFYGRTSSSICPSSSSGSNTNCSAPDALSIVKERCNGKQSCSVPADNSVFG-DPCPGTSKYLEVTY 78 (80)
T ss_dssp EE-STTEEE-EEEEEEEEBSSSSTT--GGGCS-TTB--TTHHHHHHHHHTTBSEEEEESSHHHH---SSTTS--EEEEEE
T ss_pred CCCcCCCEE-EEEEeecCCCCCCCCcCCCcCCCCccccccccchhHHhCCCCCccEEEeccCccC-CCCCCCCeEEEEEE
Confidence 899999666 69999999976 589743 3567999999999999999999999999999997 99999999999999
Q ss_pred Ee
Q 007110 616 IC 617 (618)
Q Consensus 616 ~C 617 (618)
+|
T Consensus 79 ~C 80 (80)
T PF02140_consen 79 TC 80 (80)
T ss_dssp EE
T ss_pred EC
Confidence 99
No 5
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=99.76 E-value=1e-18 Score=174.57 Aligned_cols=85 Identities=28% Similarity=0.566 Sum_probs=78.1
Q ss_pred CCCCCceEEecCCCCeEEEEeeeccCCC-CCCCCCc----cCCceecCChHHHHHhhcCCCCcceEEecCCCCCCCCCCC
Q 007110 532 KPLRPKAHLMCGPGQKIKSIKFASFGTP-EGVCGSY----RQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFGGDPCPS 606 (618)
Q Consensus 532 ~~~~~~~~L~C~~G~~I~~I~~A~yGr~-~~~C~~~----~~~~C~~~~s~~~V~~~C~Gk~~C~v~a~~~~Fg~DPC~g 606 (618)
..+|..++|+||.|.+|+ |+.|+|||. ...|... -+.+|..|.++.++.++|++|+.|.|.|..++||.|||||
T Consensus 40 aCdG~~i~L~CP~~dvIs-v~sanYGR~~~~iC~pd~~~~~Si~C~~p~s~~i~~~rCnnr~~C~vvv~s~~F~~DPCPg 118 (265)
T KOG4729|consen 40 ACDGERITLSCPRGDVIS-VQSANYGRFSDKICDPDPGREESINCYLPKSFSILSSRCNNRRQCTVVVDSDVFGDDPCPG 118 (265)
T ss_pred eecCceEEEEcCCCCEEE-EEecccCcccccccCCccccccchhccChHHHHHHHHhcCCCceEEEEecCCccCCCCCCC
Confidence 489999999999999985 999999995 4689532 3578999999999999999999999999999999999999
Q ss_pred CceeEEEEEEe
Q 007110 607 IMKQLAVEAIC 617 (618)
Q Consensus 607 t~KyL~v~y~C 617 (618)
|+|||+|+|.|
T Consensus 119 T~KYLev~Y~C 129 (265)
T KOG4729|consen 119 TSKYLEVQYGC 129 (265)
T ss_pred chhheEEEecc
Confidence 99999999999
No 6
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=99.06 E-value=3.2e-10 Score=102.51 Aligned_cols=69 Identities=36% Similarity=0.723 Sum_probs=50.4
Q ss_pred CCCceEEEEEEECCCCCCCeE-Eee--CCcceEEEEECCeeccccccccccCCCCCccccccccccccccCCCCCCceeE
Q 007110 394 RQPLTWYRTTFSAPAGNAPLA-LDM--GSMGKGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRW 470 (618)
Q Consensus 394 ~~~~~wYr~~F~~p~~~dp~~-Ld~--~g~gKG~vwVNG~nlGRYW~~~~~~G~~~~c~~~G~~~~~~~~~~cg~PQqtl 470 (618)
..+..|||++|........+. |+. ....+++|||||++|||||+. +| ||++|
T Consensus 33 ~~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~------------~g-------------~q~tf 87 (111)
T PF13364_consen 33 HAGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPG------------IG-------------PQTTF 87 (111)
T ss_dssp SSCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETTEEEEEEETT------------TE-------------CCEEE
T ss_pred CCCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECCEEeeeecCC------------CC-------------ccEEE
Confidence 457899999996422111234 333 456799999999999999964 46 99999
Q ss_pred EecCCCcccCCCceEEEE
Q 007110 471 YHVPRSWLKPTGNLLVVF 488 (618)
Q Consensus 471 YhVP~~~Lk~g~N~ivif 488 (618)
+ ||+++|+.++|.|+|+
T Consensus 88 ~-~p~~il~~~n~v~~vl 104 (111)
T PF13364_consen 88 S-VPAGILKYGNNVLVVL 104 (111)
T ss_dssp E-E-BTTBTTCEEEEEEE
T ss_pred E-eCceeecCCCEEEEEE
Confidence 8 9999999875555554
No 7
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.68 E-value=1.3e-07 Score=85.56 Aligned_cols=84 Identities=20% Similarity=0.301 Sum_probs=59.4
Q ss_pred hhhhcCCCCCcceEEEEEEecCCCCCccccCCCcce-EEec-CcCeEEEEEECCEEEEEEecccCCCeeEEEeeee-ccC
Q 007110 236 LEQINTTRDATDYLWYMTDVKIDPSEGFLRSGNYPV-LTVM-SAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVN-MRA 312 (618)
Q Consensus 236 ~Eql~~t~d~~Gyl~Yrt~i~~~~~~~~~~~~~~~~-L~v~-~~~D~a~VfvnG~~vGt~~~~~~~~~~~~~~~~~-l~~ 312 (618)
.+..+..+++.|++|||++|...+.+. ... |.+. +.+.+++|||||+++|+..... ....+|.+|.. |+.
T Consensus 24 ~l~~~~~g~~~g~~~Yrg~F~~~~~~~------~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~-g~q~tf~~p~~il~~ 96 (111)
T PF13364_consen 24 VLYASDYGFHAGYLWYRGTFTGTGQDT------SLTPLNIQGGNAFRASVWVNGWFLGSYWPGI-GPQTTFSVPAGILKY 96 (111)
T ss_dssp STCCGCGTSSSCEEEEEEEEETTTEEE------EEE-EEECSSTTEEEEEEETTEEEEEEETTT-ECCEEEEE-BTTBTT
T ss_pred eeccCccccCCCCEEEEEEEeCCCcce------eEEEEeccCCCceEEEEEECCEEeeeecCCC-CccEEEEeCceeecC
Confidence 455666677999999999997543321 123 4443 6899999999999999988332 23366766764 555
Q ss_pred CCcEEEEEEEecCC
Q 007110 313 GINKIALLSIAVGL 326 (618)
Q Consensus 313 g~n~L~ILven~Gr 326 (618)
+.++|.+|+++||+
T Consensus 97 ~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 97 GNNVLVVLWDNMGH 110 (111)
T ss_dssp CEEEEEEEEE-STT
T ss_pred CCEEEEEEEeCCCC
Confidence 67889999999996
No 8
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=98.40 E-value=2e-06 Score=82.28 Aligned_cols=100 Identities=25% Similarity=0.330 Sum_probs=71.9
Q ss_pred CCCCcceEEEEEEecCCCCCccccCCCcceEEecCcCeEEEEEECCEEEEEEecccCCCeeEEEeeeeccCCC-cEEEEE
Q 007110 242 TRDATDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGI-NKIALL 320 (618)
Q Consensus 242 t~d~~Gyl~Yrt~i~~~~~~~~~~~~~~~~L~v~~~~D~a~VfvnG~~vGt~~~~~~~~~~~~~~~~~l~~g~-n~L~IL 320 (618)
.....|+.|||++|..+.+. .+....|.++++.+.+.|||||++||...+.. ..+.+.++-.|+.|. |+|.|.
T Consensus 63 ~~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~--~~~~~dIt~~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 63 LWDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY--TPFEFDITDYLKPGEENTLAVR 136 (167)
T ss_dssp TSTCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEEEEEESTT--S-EEEECGGGSSSEEEEEEEEE
T ss_pred ccccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEEeeeCCCc--CCeEEeChhhccCCCCEEEEEE
Confidence 34588999999999886432 23456789999999999999999999987643 346666665688887 999999
Q ss_pred EEecCCccccCCC-CcccceeeccEEEc
Q 007110 321 SIAVGLPNVGPHF-ETWNAGVLGPVTLN 347 (618)
Q Consensus 321 ven~Gr~NyG~~~-~~~~kGI~G~V~l~ 347 (618)
|.+...-.+-+.+ .....||.++|.|.
T Consensus 137 v~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 137 VDNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp EESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred EeecCCCceeecCcCCccCccccEEEEE
Confidence 9965543331111 13568999999884
No 9
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.18 E-value=0.00012 Score=84.48 Aligned_cols=78 Identities=21% Similarity=0.215 Sum_probs=61.5
Q ss_pred CeeeeEeccccc-cccCCCCCCCC-HHHHHHHHHHHHHhCCceeeeeEeeccCCCC------CCCCCC---C-------c
Q 007110 26 PKMWTEAWTGWY-TEFGGPVPHRP-VEDLAFSVAKFIQKGGSFINYYMYHGGTNFG------RTAGGP---F-------I 87 (618)
Q Consensus 26 P~~~~E~~~GWf-~~WG~~~~~~~-~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG------~~~G~~---~-------~ 87 (618)
+...+|.|-+|| +.|..+.-... .+.-+..+++.|..+.. -||||||+|++|+ +.+|+. + .
T Consensus 238 ~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~me~~P~ 316 (673)
T COG1874 238 VREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLMEQLPS 316 (673)
T ss_pred HHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeeccCCcc
Confidence 677888999999 88887655444 45555667777777766 6999999999999 777764 2 5
Q ss_pred cccccCCCCcccCCCCC
Q 007110 88 ATSYDYDAPLDEYGLLR 104 (618)
Q Consensus 88 ~TSYDY~Apl~E~G~~~ 104 (618)
.|++++++.+.+.|..+
T Consensus 317 ~vn~~~~n~~~~~G~~~ 333 (673)
T COG1874 317 VVNWALYNKLKRPGALR 333 (673)
T ss_pred hhhhhhccCCCCCcccc
Confidence 79999999999999953
No 10
>PRK10150 beta-D-glucuronidase; Provisional
Probab=97.07 E-value=0.0031 Score=72.96 Aligned_cols=100 Identities=24% Similarity=0.211 Sum_probs=69.8
Q ss_pred CCcceEEEEEEecCCCCCccccCCCcceEEecCcCeEEEEEECCEEEEEEecccCCCeeEEEeeeeccCCCc-EEEEEEE
Q 007110 244 DATDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGIN-KIALLSI 322 (618)
Q Consensus 244 d~~Gyl~Yrt~i~~~~~~~~~~~~~~~~L~v~~~~D~a~VfvnG~~vGt~~~~~~~~~~~~~~~~~l~~g~n-~L~ILve 322 (618)
+..|..|||++|.++... .+....|.++++...+.|||||++||...+.. ..+.|+++-.|+.|.+ +|.|.|.
T Consensus 62 ~~~G~~WYrr~f~lp~~~----~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~--~~f~~DIT~~l~~G~~n~L~V~v~ 135 (604)
T PRK10150 62 NYVGDVWYQREVFIPKGW----AGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGY--TPFEADITPYVYAGKSVRITVCVN 135 (604)
T ss_pred CCcccEEEEEEEECCccc----CCCEEEEEECcccceEEEEECCEEeeeEcCCc--cceEEeCchhccCCCceEEEEEEe
Confidence 467899999999886331 23457899999999999999999999987643 3466666545777754 9999997
Q ss_pred ecCCcc---ccCCC-------------C-cccceeeccEEEccc
Q 007110 323 AVGLPN---VGPHF-------------E-TWNAGVLGPVTLNGL 349 (618)
Q Consensus 323 n~Gr~N---yG~~~-------------~-~~~kGI~G~V~l~g~ 349 (618)
|.-+.. .|... + ....||.++|.|...
T Consensus 136 n~~~~~~~p~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~~~ 179 (604)
T PRK10150 136 NELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLYTT 179 (604)
T ss_pred cCCCcccCCCCccccCCccccccccccccccccCCCceEEEEEc
Confidence 742110 11100 0 135799999999543
No 11
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.94 E-value=0.0014 Score=62.61 Aligned_cols=67 Identities=31% Similarity=0.580 Sum_probs=50.8
Q ss_pred CCCceEEEEEEECCCCC--CCeEEeeCCcc-eEEEEECCeeccccccccccCCCCCccccccccccccccCCCCCCceeE
Q 007110 394 RQPLTWYRTTFSAPAGN--APLALDMGSMG-KGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRW 470 (618)
Q Consensus 394 ~~~~~wYr~~F~~p~~~--dp~~Ld~~g~g-KG~vwVNG~nlGRYW~~~~~~G~~~~c~~~G~~~~~~~~~~cg~PQqtl 470 (618)
..+..|||++|.+|+.. ..++|.+.|.. ...|||||+.||+-...+ ..-.
T Consensus 66 ~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~--------------------------~~~~- 118 (167)
T PF02837_consen 66 YSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY--------------------------TPFE- 118 (167)
T ss_dssp CCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEESTT--------------------------S-EE-
T ss_pred cCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCCc--------------------------CCeE-
Confidence 35789999999998643 35899999875 999999999999965211 2223
Q ss_pred EecCCCcccCCC-ceEEEE
Q 007110 471 YHVPRSWLKPTG-NLLVVF 488 (618)
Q Consensus 471 YhVP~~~Lk~g~-N~ivif 488 (618)
+.|+. .|++|+ |+|.|.
T Consensus 119 ~dIt~-~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 119 FDITD-YLKPGEENTLAVR 136 (167)
T ss_dssp EECGG-GSSSEEEEEEEEE
T ss_pred EeChh-hccCCCCEEEEEE
Confidence 45865 789888 998884
No 12
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=96.81 E-value=0.0049 Score=75.37 Aligned_cols=97 Identities=20% Similarity=0.238 Sum_probs=69.0
Q ss_pred ceEEEEEEecCCCCCccccCCCcceEEecCcCeEEEEEECCEEEEEEecccCCCeeEEEeeeeccCCCcEEEEEEEecCC
Q 007110 247 DYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIALLSIAVGL 326 (618)
Q Consensus 247 Gyl~Yrt~i~~~~~~~~~~~~~~~~L~v~~~~D~a~VfvnG~~vGt~~~~~~~~~~~~~~~~~l~~g~n~L~ILven~Gr 326 (618)
|-.|||++|.++.+- .+.+..|.++++...+.|||||++||...+.. ..+.|++.--|+.|.|+|.|.|.+...
T Consensus 109 ~~g~Yrr~F~lp~~~----~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~LaV~V~~~~d 182 (1021)
T PRK10340 109 PTGAYQRTFTLSDGW----QGKQTIIKFDGVETYFEVYVNGQYVGFSKGSR--LTAEFDISAMVKTGDNLLCVRVMQWAD 182 (1021)
T ss_pred CeEEEEEEEEeCccc----ccCcEEEEECccceEEEEEECCEEeccccCCC--ccEEEEcchhhCCCccEEEEEEEecCC
Confidence 667999999886431 23457899999999999999999999876543 346666654577889999999986533
Q ss_pred ccccCCCC-cccceeeccEEEccc
Q 007110 327 PNVGPHFE-TWNAGVLGPVTLNGL 349 (618)
Q Consensus 327 ~NyG~~~~-~~~kGI~G~V~l~g~ 349 (618)
-.|-...+ ....||.++|.|.-.
T Consensus 183 ~s~le~qd~w~~sGI~R~V~L~~~ 206 (1021)
T PRK10340 183 STYLEDQDMWWLAGIFRDVYLVGK 206 (1021)
T ss_pred CCccccCCccccccccceEEEEEe
Confidence 22211100 124799999998544
No 13
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=96.54 E-value=0.0098 Score=72.77 Aligned_cols=95 Identities=21% Similarity=0.232 Sum_probs=67.1
Q ss_pred cceEEEEEEecCCCCCccccCCC-cceEEecCcCeEEEEEECCEEEEEEecccCCCeeEEEeeeeccCCCcEEEEEEEec
Q 007110 246 TDYLWYMTDVKIDPSEGFLRSGN-YPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIALLSIAV 324 (618)
Q Consensus 246 ~Gyl~Yrt~i~~~~~~~~~~~~~-~~~L~v~~~~D~a~VfvnG~~vGt~~~~~~~~~~~~~~~~~l~~g~n~L~ILven~ 324 (618)
.+-.|||++|.++.+- .+. +..|.++++.-.+.|||||++||...+.. ..+.|.+.-.|+.|.|+|.|.|...
T Consensus 119 n~~gwYrr~F~vp~~w----~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~L~V~V~~~ 192 (1027)
T PRK09525 119 NPTGCYSLTFTVDESW----LQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSR--LPAEFDLSPFLRAGENRLAVMVLRW 192 (1027)
T ss_pred CCeEEEEEEEEeChhh----cCCCeEEEEECeeccEEEEEECCEEEEeecCCC--ceEEEEChhhhcCCccEEEEEEEec
Confidence 3678999999886431 122 46899999999999999999999876543 3466666555788899999988543
Q ss_pred CCccccCCCC----cccceeeccEEEccc
Q 007110 325 GLPNVGPHFE----TWNAGVLGPVTLNGL 349 (618)
Q Consensus 325 Gr~NyG~~~~----~~~kGI~G~V~l~g~ 349 (618)
-. |..++ ....||..+|.|.-.
T Consensus 193 sd---gs~~e~qd~w~~sGI~R~V~L~~~ 218 (1027)
T PRK09525 193 SD---GSYLEDQDMWRMSGIFRDVSLLHK 218 (1027)
T ss_pred CC---CCccccCCceeeccccceEEEEEc
Confidence 22 22222 134699999998543
No 14
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=94.26 E-value=0.11 Score=63.88 Aligned_cols=66 Identities=26% Similarity=0.364 Sum_probs=47.6
Q ss_pred CCceEEEEEEECCCCCC--CeEEeeCCc-ceEEEEECCeeccccccccccCCCCCccccccccccccccCCCCCCceeEE
Q 007110 395 QPLTWYRTTFSAPAGNA--PLALDMGSM-GKGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWY 471 (618)
Q Consensus 395 ~~~~wYr~~F~~p~~~d--p~~Ld~~g~-gKG~vwVNG~nlGRYW~~~~~~G~~~~c~~~G~~~~~~~~~~cg~PQqtlY 471 (618)
.+..|||.+|.+|+.-+ -++|.+.|- ....|||||+-+|+-= | | |+ |- -|
T Consensus 108 n~~g~Yrr~F~lp~~~~gkrv~L~FeGV~s~a~VwvNG~~VG~~~------g--------~-~~----------pf--ef 160 (1021)
T PRK10340 108 NPTGAYQRTFTLSDGWQGKQTIIKFDGVETYFEVYVNGQYVGFSK------G--------S-RL----------TA--EF 160 (1021)
T ss_pred CCeEEEEEEEEeCcccccCcEEEEECccceEEEEEECCEEecccc------C--------C-Cc----------cE--EE
Confidence 35689999999996532 489999986 5789999999999642 1 1 11 22 23
Q ss_pred ecCCCcccCCCceEEEE
Q 007110 472 HVPRSWLKPTGNLLVVF 488 (618)
Q Consensus 472 hVP~~~Lk~g~N~ivif 488 (618)
-|.. +|+.|+|+|+|-
T Consensus 161 DIT~-~l~~G~N~LaV~ 176 (1021)
T PRK10340 161 DISA-MVKTGDNLLCVR 176 (1021)
T ss_pred Ecch-hhCCCccEEEEE
Confidence 4554 688899999874
No 15
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=92.90 E-value=0.15 Score=62.66 Aligned_cols=40 Identities=20% Similarity=0.439 Sum_probs=33.6
Q ss_pred CCceEEEEEEECCCC---CCCeEEeeCCc-ceEEEEECCeeccc
Q 007110 395 QPLTWYRTTFSAPAG---NAPLALDMGSM-GKGQVWVNGQSIGR 434 (618)
Q Consensus 395 ~~~~wYr~~F~~p~~---~dp~~Ld~~g~-gKG~vwVNG~nlGR 434 (618)
.+..|||.+|.+|+. ...++|.+.|- ....|||||+-+|.
T Consensus 119 n~~gwYrr~F~vp~~w~~~~rv~L~FeGV~~~a~VwvNG~~VG~ 162 (1027)
T PRK09525 119 NPTGCYSLTFTVDESWLQSGQTRIIFDGVNSAFHLWCNGRWVGY 162 (1027)
T ss_pred CCeEEEEEEEEeChhhcCCCeEEEEECeeccEEEEEECCEEEEe
Confidence 467999999999964 21489999986 68999999999995
No 16
>PRK10150 beta-D-glucuronidase; Provisional
Probab=92.40 E-value=0.36 Score=55.96 Aligned_cols=42 Identities=33% Similarity=0.601 Sum_probs=34.8
Q ss_pred CCceEEEEEEECCCCC--CCeEEeeCCc-ceEEEEECCeeccccc
Q 007110 395 QPLTWYRTTFSAPAGN--APLALDMGSM-GKGQVWVNGQSIGRHW 436 (618)
Q Consensus 395 ~~~~wYr~~F~~p~~~--dp~~Ld~~g~-gKG~vwVNG~nlGRYW 436 (618)
.+..|||.+|.+|+.. .-++|.+.|- ....|||||+.||+--
T Consensus 64 ~G~~WYrr~f~lp~~~~gk~v~L~Fegv~~~a~V~lNG~~vg~~~ 108 (604)
T PRK10150 64 VGDVWYQREVFIPKGWAGQRIVLRFGSVTHYAKVWVNGQEVMEHK 108 (604)
T ss_pred cccEEEEEEEECCcccCCCEEEEEECcccceEEEEECCEEeeeEc
Confidence 3679999999998642 2489999986 5899999999999753
No 17
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=85.36 E-value=2.7 Score=45.71 Aligned_cols=87 Identities=17% Similarity=0.156 Sum_probs=50.3
Q ss_pred CCCCCeeeeEeccccccccCCCCCCCCHHHHHHHHHHHHHhCCceeeeeEeeccCCCCCCCCCCCccccccCCCCcccCC
Q 007110 22 KAYKPKMWTEAWTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYG 101 (618)
Q Consensus 22 ~p~~P~~~~E~~~GWf~~WG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDY~Apl~E~G 101 (618)
.+++|.++||..+| -..|+.......++.+...+-.-++.|+..+.|+=+ ..-.+|.=.. ..+.|+-+|
T Consensus 286 ~~~kpf~v~E~~~g-~~~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~---------~~g~~~~dg 354 (374)
T PF02449_consen 286 AKGKPFWVMEQQPG-PVNWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF---------HGGLVDHDG 354 (374)
T ss_dssp TTT--EEEEEE--S---SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT---------S--SB-TTS
T ss_pred cCCCceEeecCCCC-CCCCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh---------hcccCCccC
Confidence 57899999999999 666876666666778877777888999998777766 3334442211 126788899
Q ss_pred -CCCChhHHHHHHHHHHHHh
Q 007110 102 -LLRQPKWGHLKDLHRAIKL 120 (618)
Q Consensus 102 -~~~~~Ky~~lr~~~~~i~~ 120 (618)
.+ +++|.+++++.+.|+.
T Consensus 355 ~~~-~~~~~e~~~~~~~l~~ 373 (374)
T PF02449_consen 355 REP-TRRYREVAQLGRELKK 373 (374)
T ss_dssp --B--HHHHHHHHHHHHHHT
T ss_pred CCC-CcHHHHHHHHHHHHhc
Confidence 66 7999999999887764
No 18
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=79.02 E-value=3.5 Score=35.43 Aligned_cols=50 Identities=24% Similarity=0.255 Sum_probs=34.4
Q ss_pred ceEEecCcCeEEEEEECCEEEEEEecccCCCeeEEEeeeec-cCCCcEEEEEEEecCCc
Q 007110 270 PVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNM-RAGINKIALLSIAVGLP 327 (618)
Q Consensus 270 ~~L~v~~~~D~a~VfvnG~~vGt~~~~~~~~~~~~~~~~~l-~~g~n~L~ILven~Gr~ 327 (618)
..|++.+-...++-||||+++|+..... .+. ..+ .+|.++|.+ ++..|+.
T Consensus 34 l~l~a~~~~~~~~W~vdg~~~g~~~~~~---~~~----~~~~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 34 LVLKAAGGRGPVYWFVDGEPLGTTQPGH---QLF----WQPDRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred EEEEEeCCCCcEEEEECCEEcccCCCCC---eEE----eCCCCCeeEEEEE-EcCCCCE
Confidence 3456555566999999999998876532 222 234 678999987 7777764
No 19
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=77.59 E-value=2.4 Score=41.23 Aligned_cols=63 Identities=27% Similarity=0.216 Sum_probs=29.8
Q ss_pred CcceEEEEECCeeccccccccccCCCCCccccccccccccccCCCCCCceeEEecCCCcccCCCceEEEEEecC
Q 007110 419 SMGKGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWG 492 (618)
Q Consensus 419 g~gKG~vwVNG~nlGRYW~~~~~~G~~~~c~~~G~~~~~~~~~~cg~PQqtlYhVP~~~Lk~g~N~ivifEe~g 492 (618)
.-++=+|.||| ..+..+... .| .+.|.+++ -+-.|+.+.--|.||+..|++|.|+|.|--..|
T Consensus 91 ~~~~~~V~vNg-~~~~~~~~~--~~-~d~~~~r~-------g~~~G~~~~~~~~ipa~~L~~G~Nti~lt~~~g 153 (167)
T PF14683_consen 91 AGGRLQVSVNG-WSGPFPSAP--FG-NDNAIYRS-------GIHRGNYRLYEFDIPASLLKAGENTITLTVPSG 153 (167)
T ss_dssp TT-EEEEEETT-EE--------------S--GGG-------T---S---EEEEEE-TTSS-SEEEEEEEEEE-S
T ss_pred CCCCEEEEEcC-ccCCccccc--cC-CCCceeeC-------ceecccEEEEEEEEcHHHEEeccEEEEEEEccC
Confidence 34678999999 677766311 11 12334444 233355666667899999999999998754444
No 20
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=73.56 E-value=21 Score=34.68 Aligned_cols=56 Identities=20% Similarity=0.129 Sum_probs=31.0
Q ss_pred ceEEecCcCeEEEEEECCEEEEEEec-----ccCCCe--eEEEeeeeccCCCcEEEEEEEecCC
Q 007110 270 PVLTVMSAGHALHVFVNGQLAGTAYG-----SLEFPK--LTFTEGVNMRAGINKIALLSIAVGL 326 (618)
Q Consensus 270 ~~L~v~~~~D~a~VfvnG~~vGt~~~-----~~~~~~--~~~~~~~~l~~g~n~L~ILven~Gr 326 (618)
+.|.|.. ..+..+||||+.||...- +..... .++.+.--|+.|.|+|.|++-+...
T Consensus 6 A~l~isa-~g~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~ 68 (172)
T PF08531_consen 6 ARLYISA-LGRYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWY 68 (172)
T ss_dssp -EEEEEE-ESEEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S
T ss_pred EEEEEEe-CeeEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCcc
Confidence 4566553 347789999999997551 111111 2333333478899999999976443
No 21
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=68.28 E-value=12 Score=30.66 Aligned_cols=30 Identities=13% Similarity=0.339 Sum_probs=23.2
Q ss_pred CcCeEEEEEECCEEEEEEecccCC--CeeEEE
Q 007110 276 SAGHALHVFVNGQLAGTAYGSLEF--PKLTFT 305 (618)
Q Consensus 276 ~~~D~a~VfvnG~~vGt~~~~~~~--~~~~~~ 305 (618)
...|.|.||++++|+|++++.... .++.|+
T Consensus 25 k~~dsaEV~~g~EfiGvi~~DedeGe~Sy~f~ 56 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDEDEGEVSYNFQ 56 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeecCCCcEEEEEE
Confidence 568999999999999999986543 334443
No 22
>PLN03059 beta-galactosidase; Provisional
Probab=63.98 E-value=25 Score=42.39 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=47.3
Q ss_pred CCCceEEEEEEECCCCCC------CeEEeeCCcc-eEEEEECCeeccccccccccCCCCCccccccccccccccCCCCCC
Q 007110 394 RQPLTWYRTTFSAPAGNA------PLALDMGSMG-KGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEA 466 (618)
Q Consensus 394 ~~~~~wYr~~F~~p~~~d------p~~Ld~~g~g-KG~vwVNG~nlGRYW~~~~~~G~~~~c~~~G~~~~~~~~~~cg~P 466 (618)
..+..||+++|+++.... ...|.+.+.+ ..+|||||+-+|.-+-.. .+ +
T Consensus 468 ~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~-----------~~-------------~ 523 (840)
T PLN03059 468 ATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGEL-----------SN-------------P 523 (840)
T ss_pred CCceEEEEEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEEeec-----------CC-------------c
Confidence 347899999999865421 1237777776 899999999999875211 11 3
Q ss_pred ceeEEecCCCc-ccCCCceEEEEEe
Q 007110 467 SQRWYHVPRSW-LKPTGNLLVVFEE 490 (618)
Q Consensus 467 QqtlYhVP~~~-Lk~g~N~ivifEe 490 (618)
+-+ ++.+. |+.|.|+|-||-|
T Consensus 524 ~~~---~~~~v~l~~g~n~L~iLse 545 (840)
T PLN03059 524 KLT---FSQNVKLTVGINKISLLSV 545 (840)
T ss_pred ceE---EecccccCCCceEEEEEEE
Confidence 332 55442 6789999977643
No 23
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=63.26 E-value=8.1 Score=31.47 Aligned_cols=45 Identities=27% Similarity=0.440 Sum_probs=28.6
Q ss_pred eEEecCcCeEEEEEECCEEEEEEecccCCCeeEEEeeeeccCCCcEEEEEEEecCCc
Q 007110 271 VLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIALLSIAVGLP 327 (618)
Q Consensus 271 ~L~v~~~~D~a~VfvnG~~vGt~~~~~~~~~~~~~~~~~l~~g~n~L~ILven~Gr~ 327 (618)
.|.|.+.-.-|.|||||+++|... ..+. .++.|.++|.| +.-|..
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp-------~~~~---~l~~G~~~v~v--~~~Gy~ 47 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP-------LTLK---DLPPGEHTVTV--EKPGYE 47 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc-------ceee---ecCCccEEEEE--EECCCe
Confidence 567777667899999999999331 2221 25577766555 444443
No 24
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=62.33 E-value=10 Score=36.87 Aligned_cols=54 Identities=26% Similarity=0.534 Sum_probs=32.2
Q ss_pred EEeeCCcceEEEEECCeeccccccccccCCCCCccccccccccccccCCCCCCceeEEec---CCCcccCCCceEEEEE
Q 007110 414 ALDMGSMGKGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHV---PRSWLKPTGNLLVVFE 489 (618)
Q Consensus 414 ~Ld~~g~gKG~vwVNG~nlGRYW~~~~~~G~~~~c~~~G~~~~~~~~~~cg~PQqtlYhV---P~~~Lk~g~N~ivifE 489 (618)
.|..++.|+=.+||||+.+|+--- ..|. -.| +...+| . =.++|++|+|.|.|.=
T Consensus 7 ~l~isa~g~Y~l~vNG~~V~~~~l---~P~~-------t~y-----------~~~~~Y-~tyDVt~~L~~G~N~iav~l 63 (172)
T PF08531_consen 7 RLYISALGRYELYVNGERVGDGPL---APGW-------TDY-----------DKRVYY-QTYDVTPYLRPGENVIAVWL 63 (172)
T ss_dssp EEEEEEESEEEEEETTEEEEEE------------------B-----------TTEEEE-EEEE-TTT--TTEEEEEEEE
T ss_pred EEEEEeCeeEEEEECCEEeeCCcc---cccc-------ccC-----------CCceEE-EEEeChHHhCCCCCEEEEEE
Confidence 477788899999999999997531 0110 001 333333 3 2568999999999853
No 25
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=60.92 E-value=14 Score=38.54 Aligned_cols=62 Identities=29% Similarity=0.309 Sum_probs=44.4
Q ss_pred CchhhhhcCC---CCCcceEEEEEEecCCCCCccccCCCcceEEecCcCeEEEEEECCEEEEEEec
Q 007110 233 SGLLEQINTT---RDATDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYG 295 (618)
Q Consensus 233 ~~~~Eql~~t---~d~~Gyl~Yrt~i~~~~~~~~~~~~~~~~L~v~~~~D~a~VfvnG~~vGt~~~ 295 (618)
|..+-.+++. +|..|-+||+.++.++.+. ....+....|++.++|-.|.|||||.-+=...+
T Consensus 71 pss~nDi~~d~~lrdfv~~~wyer~v~vpe~w-~~~~~~r~vlr~~s~H~~Aivwvng~~~~~h~g 135 (297)
T KOG2024|consen 71 PSSFNDIGQDWRLRDFVGLVWYERTVTVPESW-TQDLGKRVVLRIGSAHSYAIVWVNGVDALEHEG 135 (297)
T ss_pred ccchhccccCCccccceeeeEEEEEEEcchhh-hhhcCCeEEEEeecccceeEEEEcceeeccccc
Confidence 3445666664 4788999999999886443 122234578999999999999999987655544
No 26
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=56.87 E-value=2.9 Score=48.37 Aligned_cols=60 Identities=15% Similarity=0.248 Sum_probs=52.6
Q ss_pred ecCCCCeEEEEeeeccCCCCCCCCCccCCceecCChHHHHHhhcCCCCcceEEecCCCCC
Q 007110 541 MCGPGQKIKSIKFASFGTPEGVCGSYRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFG 600 (618)
Q Consensus 541 ~C~~G~~I~~I~~A~yGr~~~~C~~~~~~~C~~~~s~~~V~~~C~Gk~~C~v~a~~~~Fg 600 (618)
.|.++..+..|.+|.||..+++|+.+-...|.++.+...+.+.+..+..|+|..-.+.++
T Consensus 331 ~~ep~lv~gd~~~~kyg~~~~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~ 390 (649)
T KOG0496|consen 331 YCEPALVAGDITTAKYGNLREACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKT 390 (649)
T ss_pred hcCccccccCcccccccchhhHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcc
Confidence 455688888899999999999999999999999999999999999999999998765543
No 27
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=54.44 E-value=9.7 Score=36.46 Aligned_cols=16 Identities=50% Similarity=0.717 Sum_probs=14.9
Q ss_pred CCCC--CCceeEEEEEEe
Q 007110 602 DPCP--SIMKQLAVEAIC 617 (618)
Q Consensus 602 DPC~--gt~KyL~v~y~C 617 (618)
|||| |..|.|.|.|..
T Consensus 116 DP~p~~ge~K~L~V~Y~f 133 (151)
T PF11875_consen 116 DPCPFLGEPKQLRVRYRF 133 (151)
T ss_pred CCccccCCccEEEEEEEE
Confidence 9999 999999999975
No 28
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=49.56 E-value=83 Score=28.58 Aligned_cols=70 Identities=13% Similarity=0.222 Sum_probs=42.1
Q ss_pred eEEEEEEecCCCCCccccCCCcceEEecCcCeEEEEEECCEEEEEEecccC-----CCeeEEEeeeeccCC-CcEEEEEE
Q 007110 248 YLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLE-----FPKLTFTEGVNMRAG-INKIALLS 321 (618)
Q Consensus 248 yl~Yrt~i~~~~~~~~~~~~~~~~L~v~~~~D~a~VfvnG~~vGt~~~~~~-----~~~~~~~~~~~l~~g-~n~L~ILv 321 (618)
.+.|++.|..+.++.+ .+.+. ..|.+.+||||+.+-...+... .........+.|.+| .+.|.|+.
T Consensus 47 ~~~~~G~~~~~~~G~y-------~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y 118 (145)
T PF07691_consen 47 SVRWTGYFKPPETGTY-------TFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEY 118 (145)
T ss_dssp EEEEEEEEEESSSEEE-------EEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEE
T ss_pred EEEEEEEEecccCceE-------EEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEE
Confidence 4568888877655421 33333 6789999999999987765321 001122223445554 67888876
Q ss_pred EecC
Q 007110 322 IAVG 325 (618)
Q Consensus 322 en~G 325 (618)
.+.+
T Consensus 119 ~~~~ 122 (145)
T PF07691_consen 119 FNRG 122 (145)
T ss_dssp EECS
T ss_pred EECC
Confidence 6644
No 29
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=30.73 E-value=37 Score=34.25 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=17.9
Q ss_pred CCceEEecCCCCeEEEEeeeccCCCC
Q 007110 535 RPKAHLMCGPGQKIKSIKFASFGTPE 560 (618)
Q Consensus 535 ~~~~~L~C~~G~~I~~I~~A~yGr~~ 560 (618)
.-..+||=++.|.+ .|-.|.-.+|.
T Consensus 133 ~lP~~LSGGEQQRv-aIARAiV~~P~ 157 (223)
T COG2884 133 ALPSQLSGGEQQRV-AIARAIVNQPA 157 (223)
T ss_pred cCccccCchHHHHH-HHHHHHccCCC
Confidence 34557777777777 48888888875
No 30
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=26.83 E-value=2.2e+02 Score=25.77 Aligned_cols=63 Identities=11% Similarity=0.261 Sum_probs=0.0
Q ss_pred EEEEEEecCCCCCccccCCCcceEEecCcCeEEEEEECCEEEEEEecccCCCeeEEEeeeeccCC-CcEEEEE
Q 007110 249 LWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAG-INKIALL 320 (618)
Q Consensus 249 l~Yrt~i~~~~~~~~~~~~~~~~L~v~~~~D~a~VfvnG~~vGt~~~~~~~~~~~~~~~~~l~~g-~n~L~IL 320 (618)
+.+++.|..+.++.+ .+.+ ...|.+.+||||+.+-...+.. .........+.|.+| .+.|.|.
T Consensus 46 ~~~~g~i~~~~~G~y-------~f~~-~~~~~~~l~Idg~~vid~~~~~-~~~~~~~~~v~l~~g~~~~i~v~ 109 (136)
T smart00758 46 VRWTGYLKPPEDGEY-------TFSI-TSDDGARLWIDGKLVIDNWGKH-EARPSTSSTLYLLAGGTYPIRIE 109 (136)
T ss_pred EEEEEEEECCCCccE-------EEEE-EcCCcEEEEECCcEEEcCCccC-CCccccceeEEEeCCcEEEEEEE
No 31
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=26.28 E-value=1.1e+02 Score=27.49 Aligned_cols=33 Identities=24% Similarity=0.446 Sum_probs=23.0
Q ss_pred EEEEEECCEEEEEEecccCCCeeEEEeeeeccCCCcEEEE
Q 007110 280 ALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIAL 319 (618)
Q Consensus 280 ~a~VfvnG~~vGt~~~~~~~~~~~~~~~~~l~~g~n~L~I 319 (618)
...|||||+++|.+... .+.+ +.+.+|.++|..
T Consensus 42 ~~~v~vdg~~ig~l~~g----~y~~---~~v~pG~h~i~~ 74 (117)
T PF11008_consen 42 KPDVYVDGELIGELKNG----GYFY---VEVPPGKHTISA 74 (117)
T ss_pred cceEEECCEEEEEeCCC----eEEE---EEECCCcEEEEE
Confidence 45789999999997542 1322 345788888877
No 32
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=25.12 E-value=2.7e+02 Score=24.71 Aligned_cols=45 Identities=22% Similarity=0.201 Sum_probs=29.6
Q ss_pred eEEEEEECC---EEEEEEecccC---CCeeEEEeeeeccCCCcEEEEEEEe
Q 007110 279 HALHVFVNG---QLAGTAYGSLE---FPKLTFTEGVNMRAGINKIALLSIA 323 (618)
Q Consensus 279 D~a~VfvnG---~~vGt~~~~~~---~~~~~~~~~~~l~~g~n~L~ILven 323 (618)
-.+.|+||| +.+++..-... ......+.++.+..|.|+|.|....
T Consensus 60 ~~~~l~id~~~g~~~~~~~~~~tg~w~~~~~~~~~v~l~~G~h~i~l~~~~ 110 (125)
T PF03422_consen 60 GTIELRIDGPDGTLIGTVSLPPTGGWDTWQTVSVSVKLPAGKHTIYLVFNG 110 (125)
T ss_dssp EEEEEEETTTTSEEEEEEEEE-ESSTTEEEEEEEEEEEESEEEEEEEEESS
T ss_pred cEEEEEECCCCCcEEEEEEEcCCCCccccEEEEEEEeeCCCeeEEEEEEEC
Confidence 478999999 89888754211 1112344566777898988885544
No 33
>PF12733 Cadherin-like: Cadherin-like beta sandwich domain
Probab=24.84 E-value=1.7e+02 Score=24.48 Aligned_cols=56 Identities=23% Similarity=0.302 Sum_probs=33.6
Q ss_pred EEEEecCCCCCccccCCCcceEEecCcCeEEEEEECCEEEEEEecccCCCeeEEEeeeeccCCCcE-EEEEEEe
Q 007110 251 YMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINK-IALLSIA 323 (618)
Q Consensus 251 Yrt~i~~~~~~~~~~~~~~~~L~v~~~~D~a~VfvnG~~vGt~~~~~~~~~~~~~~~~~l~~g~n~-L~ILven 323 (618)
|+..++..... ..+........+.|.|||..+... + ... .+.|..|.|. |.|-|..
T Consensus 16 Y~~~V~~~~~~--------v~v~a~~~~~~a~v~vng~~~~~~-~------~~~--~i~L~~G~n~~i~i~Vta 72 (88)
T PF12733_consen 16 YTVTVPNDVDS--------VTVTATPEDSGATVTVNGVPVNSG-G------YSA--TIPLNEGENTVITITVTA 72 (88)
T ss_pred EEEEECCCceE--------EEEEEEECCCCEEEEEcCEEccCC-C------cce--eeEccCCCceEEEEEEEc
Confidence 67677543221 344444457789999999776432 1 111 3456678888 8887743
No 34
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=23.86 E-value=1.1e+02 Score=32.04 Aligned_cols=77 Identities=6% Similarity=-0.157 Sum_probs=49.5
Q ss_pred EEecCCCCeEEEEeeeccCCCC---CCCCC----ccCCceecCChHHHHHhhcCCCCcceEEecCCCCCCCCC-CCCcee
Q 007110 539 HLMCGPGQKIKSIKFASFGTPE---GVCGS----YRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFGGDPC-PSIMKQ 610 (618)
Q Consensus 539 ~L~C~~G~~I~~I~~A~yGr~~---~~C~~----~~~~~C~~~~s~~~V~~~C~Gk~~C~v~a~~~~Fg~DPC-~gt~Ky 610 (618)
.+.|+....+ .+..+.+++.. .+|.. ...-.|.....+..+.+.|.+++.|++...+.-++ -+| ++-.+|
T Consensus 146 ~~~~~~~~~~-~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ct~~~~~~~~~-~~~~~~~~~~ 223 (265)
T KOG4729|consen 146 DPPRSEIRLE-CREGRRLAVYSAVMKTSPQKDPETEIRHECVSSVLPQLLRQCHAKEGCTLKSDGIKGH-CRHGHLHKVY 223 (265)
T ss_pred CCccCcccch-hhhcccccccccccccCCCCcccCCCCceeecccchhhhhcccccCCceeecCCcccc-ccccceeEEE
Confidence 3344444332 45555666632 24532 12234555566788899999999999999988887 466 455678
Q ss_pred EEEEEEe
Q 007110 611 LAVEAIC 617 (618)
Q Consensus 611 L~v~y~C 617 (618)
+.|.+.|
T Consensus 224 ~~~n~e~ 230 (265)
T KOG4729|consen 224 VTVTEEI 230 (265)
T ss_pred EEecccc
Confidence 8887766
No 35
>cd02848 Chitinase_N_term Chitinase N-terminus domain. Chitinases hydrolyze the abundant natural biopolymer chitin, producing smaller chito-oligosaccharides. Chitin consists of multiple N-acetyl-D-glucosamine (NAG) residues connected via beta-1,4-glycosidic linkages and is an important structural element of fungal cell wall and arthropod exoskeletons. On the basis of the mode of chitin hydrolysis, chitinases are classified as random, endo-, and exo-chitinases and based on sequence criteria, chitinases belong to families 18 and 19 of glycosyl hydrolases. The N-terminus of chitinase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitob
Probab=20.89 E-value=3.8e+02 Score=24.33 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=28.1
Q ss_pred cCcCeEEEEEECCEEEEEEecccCCCeeEEEeeeeccCCCcEEEE-EEEecC
Q 007110 275 MSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIAL-LSIAVG 325 (618)
Q Consensus 275 ~~~~D~a~VfvnG~~vGt~~~~~~~~~~~~~~~~~l~~g~n~L~I-Lven~G 325 (618)
.+.+|.++|++||+.+-+..........+|.. -+.|...+.| |+..-|
T Consensus 45 G~~Gd~a~vl~dg~~V~~G~~~~~~~~at~~v---~kgG~y~m~V~lCn~dG 93 (106)
T cd02848 45 GDPGDTYKVLLDGKEVWSGALTGSSGTATFKV---GKGGRYQMQVALCNGDG 93 (106)
T ss_pred CCCCcEEEEEECCeEEEcccCCCCccEEEEEe---CCCCeEEEEEEEECCCC
Confidence 57899999999998874443222112333432 1345666666 555544
Done!