BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007111
(617 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 19/186 (10%)
Query: 58 KVLLVGGK---TDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFG 114
K+ +V GK T++ D SV +D WS V+ ++P+ GH V+ + ++ G
Sbjct: 111 KIYVVAGKDLQTEASLD--SVLCYDPVAAKWSEVK---NLPIKVYGHNVISHNGMIYCLG 165
Query: 115 GEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTL 174
G+ ++ N + +++ K W L T PRS A++ K ++I GG ++
Sbjct: 166 GKTDDKKCTNRVFIYNPKKGDWKDLAPMKT---PRSMFGVAIHKGK-IVIAGGVTEDGLS 221
Query: 175 NDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGS----RKKRHAETLIF 230
+ + D +T W ++ P R+ V Y GG + K A T +
Sbjct: 222 ASVEAFDLKTNKW---EVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVN 278
Query: 231 DILKGE 236
DI K E
Sbjct: 279 DIWKYE 284
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 8/132 (6%)
Query: 59 VLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDG 118
++ V G D S+ +D + WS++ GD+ AR G +V AS V+ GG DG
Sbjct: 114 MIYVSGGFDGSRRHTSMERYDPNIDQWSML---GDMQTAREGAGLVVASGVIYCLGGYDG 170
Query: 119 KRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLY 178
LN + +D + W + T RS AL +D ++ + GG + L+ +
Sbjct: 171 L-NILNSVEKYDPHTGHWTNVTPMAT---KRSGAGVALLND-HIYVVGGFDGTAHLSSVE 225
Query: 179 SLDFETMIWTRI 190
+ + T WT +
Sbjct: 226 AYNIRTDSWTTV 237
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 16/140 (11%)
Query: 106 ASSVLILFGGEDGKRRKLNDLHMFDLKSLTW--LPLHCTGTGPSPRSNHVAALYDDKNLL 163
A+ VL++ GG ++ ++ + +D K+ W LP + + +VA++ +
Sbjct: 13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLP------SITRKRRYVASVSLHDRIY 66
Query: 164 IFGGSSKSKTLNDLYSLDF---ETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGS 219
+ GG L+ + LD+ E +W + R G G G Y++GG
Sbjct: 67 VIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNV----RRGLAGATTLGDMIYVSGGFD 122
Query: 220 RKKRHAETLIFDILKGEWSV 239
+RH +D +WS+
Sbjct: 123 GSRRHTSMERYDPNIDQWSM 142
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZW9|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
Length = 695
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 90 AKGDIPVARSGHTVVRAS--SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPS 147
+ ++PVAR HT S + L+L GG + L+D +FD+K+ W +
Sbjct: 432 SSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREW---SMIKSLSH 488
Query: 148 PRSNHVAALYDDKNLLIFGGSSK 170
R H A D N+LI GG ++
Sbjct: 489 TRFRHSACSLPDGNVLILGGVTE 511
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 15/79 (18%)
Query: 47 CRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA 106
C + IS ++LL+GG+ W FD +T WS++++ HT R
Sbjct: 442 CHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKS--------LSHTRFRH 493
Query: 107 SS-------VLILFGGEDG 118
S+ VLIL G +G
Sbjct: 494 SACSLPDGNVLILGGVTEG 512
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 59 VLLVGGKTDSGSDRV--SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGE 116
+ +VGG+ +R SV +D + W +P GHTV+ ++ + GG+
Sbjct: 101 IYVVGGREIKDGERCLDSVMCYDRLSFKWG---ESDPLPYVVYGHTVLSHMDLVYVIGGK 157
Query: 117 DGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFG 166
R+ LN + ++D K W L T RS A ++D + ++ G
Sbjct: 158 GSDRKCLNKMCVYDPKKFEWKELAPMQTA---RSLFGATVHDGRIIVAAG 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,160,178
Number of Sequences: 62578
Number of extensions: 681756
Number of successful extensions: 1255
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1241
Number of HSP's gapped (non-prelim): 17
length of query: 617
length of database: 14,973,337
effective HSP length: 105
effective length of query: 512
effective length of database: 8,402,647
effective search space: 4302155264
effective search space used: 4302155264
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)