Query 007111
Match_columns 617
No_of_seqs 289 out of 2434
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 19:04:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007111.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007111hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4693 Uncharacterized conser 100.0 2.3E-41 5E-46 330.7 20.6 311 44-376 11-359 (392)
2 KOG4441 Proteins containing BT 100.0 3.5E-39 7.5E-44 362.9 30.7 266 1-296 287-555 (571)
3 PLN02193 nitrile-specifier pro 100.0 4.5E-37 9.8E-42 340.3 36.9 298 1-315 123-455 (470)
4 PLN02193 nitrile-specifier pro 100.0 7.7E-37 1.7E-41 338.5 35.6 277 1-288 178-469 (470)
5 PLN02153 epithiospecifier prot 100.0 8.8E-37 1.9E-41 324.9 33.4 277 1-288 35-340 (341)
6 PHA02713 hypothetical protein; 100.0 8.6E-37 1.9E-41 344.1 30.4 250 13-294 271-540 (557)
7 PLN02153 epithiospecifier prot 100.0 4.6E-36 1E-40 319.4 34.1 281 21-315 4-326 (341)
8 KOG4693 Uncharacterized conser 100.0 1E-34 2.2E-39 284.1 22.1 268 1-274 26-312 (392)
9 PHA03098 kelch-like protein; P 100.0 1E-33 2.2E-38 318.8 29.4 253 12-295 262-519 (534)
10 KOG4441 Proteins containing BT 100.0 2.7E-33 5.9E-38 315.2 25.9 219 1-241 335-554 (571)
11 KOG0379 Kelch repeat-containin 100.0 2E-32 4.4E-37 303.3 27.4 281 1-290 73-360 (482)
12 TIGR03547 muta_rot_YjhT mutatr 100.0 9E-32 1.9E-36 286.8 29.7 258 1-286 20-345 (346)
13 TIGR03548 mutarot_permut cycli 100.0 1.9E-31 4E-36 281.9 28.9 246 1-274 16-313 (323)
14 TIGR03548 mutarot_permut cycli 100.0 2E-31 4.3E-36 281.7 28.9 258 46-314 3-314 (323)
15 KOG0379 Kelch repeat-containin 100.0 9.4E-32 2E-36 298.0 26.1 246 42-293 56-307 (482)
16 PHA03098 kelch-like protein; P 100.0 3.2E-31 6.9E-36 298.5 27.1 220 1-242 297-520 (534)
17 PRK14131 N-acetylneuraminic ac 100.0 1.1E-30 2.5E-35 281.7 29.8 260 1-291 41-372 (376)
18 PHA02713 hypothetical protein; 100.0 4.2E-31 9.1E-36 298.0 27.4 224 73-314 272-523 (557)
19 TIGR03547 muta_rot_YjhT mutatr 100.0 2E-30 4.3E-35 276.5 29.6 254 42-314 4-332 (346)
20 PHA02790 Kelch-like protein; P 100.0 2.6E-30 5.6E-35 287.2 28.9 208 52-292 267-475 (480)
21 PHA02790 Kelch-like protein; P 100.0 2.9E-30 6.2E-35 286.8 27.0 204 1-240 274-477 (480)
22 KOG1230 Protein containing rep 100.0 1.8E-30 3.8E-35 267.4 19.1 230 1-241 81-348 (521)
23 PRK14131 N-acetylneuraminic ac 100.0 3.7E-29 8E-34 270.0 28.4 254 42-314 25-354 (376)
24 KOG1230 Protein containing rep 100.0 1.4E-28 3E-33 253.5 20.7 244 43-293 63-346 (521)
25 KOG4152 Host cell transcriptio 100.0 1.8E-28 3.9E-33 257.1 18.2 276 1-290 45-366 (830)
26 KOG4152 Host cell transcriptio 99.9 3.8E-27 8.2E-32 247.2 18.0 278 23-316 16-345 (830)
27 PF03089 RAG2: Recombination a 99.8 3.9E-20 8.3E-25 183.7 15.5 233 94-343 19-294 (337)
28 COG3055 Uncharacterized protei 99.7 1E-14 2.2E-19 149.9 21.2 249 14-288 58-375 (381)
29 KOG2437 Muskelin [Signal trans 99.6 2E-15 4.3E-20 159.5 6.1 271 21-293 236-540 (723)
30 COG3055 Uncharacterized protei 99.5 3.3E-13 7.1E-18 138.9 19.8 258 42-315 33-361 (381)
31 KOG2437 Muskelin [Signal trans 99.4 8.5E-14 1.8E-18 147.3 4.4 203 82-287 238-471 (723)
32 PF13964 Kelch_6: Kelch motif 99.0 1.5E-09 3.4E-14 82.6 6.3 50 97-149 1-50 (50)
33 PF13964 Kelch_6: Kelch motif 99.0 1.7E-09 3.6E-14 82.4 6.3 50 46-98 1-50 (50)
34 PLN02772 guanylate kinase 98.8 2E-08 4.4E-13 107.3 11.4 89 95-185 22-110 (398)
35 PF13415 Kelch_3: Galactose ox 98.7 1.9E-08 4.1E-13 76.3 6.0 48 107-157 1-49 (49)
36 PLN02772 guanylate kinase 98.7 6.1E-08 1.3E-12 103.7 11.7 88 144-234 20-109 (398)
37 PF01344 Kelch_1: Kelch motif; 98.7 3.4E-08 7.4E-13 73.9 5.5 44 97-140 1-44 (47)
38 PF13415 Kelch_3: Galactose ox 98.7 3.8E-08 8.2E-13 74.7 5.7 48 56-106 1-49 (49)
39 PF01344 Kelch_1: Kelch motif; 98.7 4.5E-08 9.7E-13 73.2 5.4 44 46-89 1-44 (47)
40 PF13418 Kelch_4: Galactose ox 98.6 6.2E-08 1.3E-12 73.3 4.6 47 97-146 1-48 (49)
41 PF13418 Kelch_4: Galactose ox 98.5 7.6E-08 1.7E-12 72.8 4.1 47 46-95 1-48 (49)
42 PF07646 Kelch_2: Kelch motif; 98.5 2.5E-07 5.5E-12 70.1 6.3 44 46-89 1-46 (49)
43 PF07646 Kelch_2: Kelch motif; 98.5 2.3E-07 5E-12 70.3 5.9 45 148-193 1-48 (49)
44 PF07250 Glyoxal_oxid_N: Glyox 98.4 2.5E-05 5.3E-10 79.2 18.9 153 73-246 46-211 (243)
45 PF13854 Kelch_5: Kelch motif 98.3 1E-06 2.3E-11 64.6 5.4 41 94-134 1-42 (42)
46 PF03089 RAG2: Recombination a 98.3 7.3E-05 1.6E-09 75.7 18.8 158 59-221 41-231 (337)
47 smart00612 Kelch Kelch domain. 98.3 1.2E-06 2.6E-11 64.7 4.7 47 109-159 1-47 (47)
48 TIGR01640 F_box_assoc_1 F-box 98.2 0.00065 1.4E-08 68.3 24.9 207 74-289 15-230 (230)
49 smart00612 Kelch Kelch domain. 98.2 2.5E-06 5.3E-11 63.1 4.8 46 162-210 2-47 (47)
50 PF13854 Kelch_5: Kelch motif 98.2 3.5E-06 7.7E-11 61.7 5.1 39 145-184 1-41 (42)
51 TIGR01640 F_box_assoc_1 F-box 97.9 0.0036 7.7E-08 62.9 23.2 203 14-235 14-230 (230)
52 PF07250 Glyoxal_oxid_N: Glyox 97.7 0.00083 1.8E-08 68.2 14.3 143 126-291 48-201 (243)
53 PRK11138 outer membrane biogen 97.2 0.32 6.9E-06 53.0 27.9 220 14-290 79-315 (394)
54 TIGR03300 assembly_YfgL outer 97.1 0.34 7.4E-06 52.2 27.3 211 14-290 75-300 (377)
55 PRK11138 outer membrane biogen 97.0 0.43 9.3E-06 51.9 26.8 210 14-290 130-356 (394)
56 PF08450 SGL: SMP-30/Gluconola 96.9 0.34 7.4E-06 48.9 23.2 211 14-270 22-243 (246)
57 PF13360 PQQ_2: PQQ-like domai 96.8 0.67 1.5E-05 45.9 24.2 174 14-238 46-237 (238)
58 PF12768 Rax2: Cortical protei 96.5 0.17 3.8E-06 52.7 17.8 112 71-192 14-130 (281)
59 TIGR03300 assembly_YfgL outer 96.4 1.5 3.3E-05 47.1 25.6 173 14-239 115-305 (377)
60 PRK04792 tolB translocation pr 96.4 2.1 4.7E-05 47.6 27.3 149 73-241 242-390 (448)
61 PF13360 PQQ_2: PQQ-like domai 96.4 1.2 2.5E-05 44.2 30.1 213 14-290 3-233 (238)
62 PF07893 DUF1668: Protein of u 96.4 0.14 3E-06 55.0 16.9 120 55-192 75-216 (342)
63 TIGR03866 PQQ_ABC_repeats PQQ- 96.3 1.4 3E-05 44.6 28.0 186 1-237 3-191 (300)
64 KOG2055 WD40 repeat protein [G 96.3 0.13 2.9E-06 55.6 15.9 147 56-233 268-417 (514)
65 KOG2055 WD40 repeat protein [G 96.3 0.09 2E-06 56.8 14.3 156 108-295 225-382 (514)
66 KOG0161 Myosin class II heavy 96.2 0.022 4.7E-07 72.1 10.9 135 470-609 1622-1796(1930)
67 PF12768 Rax2: Cortical protei 96.2 0.15 3.3E-06 53.1 15.4 124 111-242 2-130 (281)
68 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.8 4.1 8.9E-05 46.4 25.7 217 52-290 65-336 (527)
69 PTZ00421 coronin; Provisional 95.4 6 0.00013 44.7 28.8 45 465-512 445-489 (493)
70 PRK00178 tolB translocation pr 95.3 5.7 0.00012 43.6 27.2 148 73-241 223-371 (430)
71 PRK05137 tolB translocation pr 95.0 7.2 0.00016 43.1 28.2 188 73-290 226-415 (435)
72 PF07888 CALCOCO1: Calcium bin 95.0 0.15 3.2E-06 57.2 10.5 38 571-608 262-299 (546)
73 cd00216 PQQ_DH Dehydrogenases 94.8 8.9 0.00019 43.2 25.8 216 52-290 57-322 (488)
74 PRK05137 tolB translocation pr 94.7 8 0.00017 42.7 23.5 194 14-241 226-420 (435)
75 TIGR02800 propeller_TolB tol-p 94.7 8 0.00017 42.0 26.6 148 73-241 214-362 (417)
76 PRK04922 tolB translocation pr 94.6 8.9 0.00019 42.3 26.6 149 73-241 228-376 (433)
77 cd00200 WD40 WD40 domain, foun 94.6 4.9 0.00011 39.1 25.6 189 56-290 62-252 (289)
78 PF07893 DUF1668: Protein of u 94.5 1.2 2.5E-05 47.9 15.8 118 106-242 75-216 (342)
79 PRK00178 tolB translocation pr 94.5 9.1 0.0002 42.0 24.3 145 124-291 223-367 (430)
80 PRK04792 tolB translocation pr 94.3 10 0.00022 42.2 23.2 149 14-192 242-391 (448)
81 cd00216 PQQ_DH Dehydrogenases 94.2 12 0.00026 42.1 27.7 204 14-240 120-383 (488)
82 KOG0310 Conserved WD40 repeat- 94.1 4.4 9.5E-05 44.5 18.7 181 53-276 119-302 (487)
83 PRK04043 tolB translocation pr 94.1 11 0.00025 41.5 23.7 186 74-290 214-403 (419)
84 PF10186 Atg14: UV radiation r 94.0 0.22 4.7E-06 51.9 8.7 131 469-600 23-162 (302)
85 KOG0977 Nuclear envelope prote 93.9 0.23 5E-06 55.7 8.9 135 464-605 83-217 (546)
86 PRK04922 tolB translocation pr 93.8 13 0.00028 41.1 23.5 146 123-291 227-372 (433)
87 PRK11028 6-phosphogluconolacto 93.7 11 0.00023 39.7 25.7 230 14-288 12-259 (330)
88 KOG0646 WD40 repeat protein [G 93.6 14 0.0003 40.6 21.2 202 49-293 84-313 (476)
89 PRK13684 Ycf48-like protein; P 93.6 11 0.00024 40.2 20.9 178 56-274 142-323 (334)
90 PF02897 Peptidase_S9_N: Proly 93.6 13 0.00029 40.4 22.9 241 12-291 148-408 (414)
91 cd00094 HX Hemopexin-like repe 93.5 5.7 0.00012 38.9 17.2 151 51-236 11-178 (194)
92 PLN00181 protein SPA1-RELATED; 93.2 24 0.00051 42.3 26.3 143 56-234 587-739 (793)
93 PF10282 Lactonase: Lactonase, 93.1 14 0.00031 39.4 22.2 202 60-288 2-223 (345)
94 PF08450 SGL: SMP-30/Gluconola 93.0 11 0.00023 37.9 22.6 215 56-313 11-236 (246)
95 PRK03629 tolB translocation pr 92.9 18 0.00038 40.0 27.1 149 73-241 223-371 (429)
96 KOG2321 WD40 repeat protein [G 92.5 3.3 7.1E-05 46.5 14.8 127 146-290 131-261 (703)
97 TIGR03866 PQQ_ABC_repeats PQQ- 92.5 13 0.00028 37.4 27.9 224 14-290 53-282 (300)
98 PF02191 OLF: Olfactomedin-lik 92.4 15 0.00032 37.8 19.4 195 56-271 30-237 (250)
99 PLN00181 protein SPA1-RELATED; 92.3 29 0.00062 41.6 24.2 184 57-289 545-740 (793)
100 PF13094 CENP-Q: CENP-Q, a CEN 92.2 0.62 1.3E-05 44.3 8.1 107 472-581 19-143 (160)
101 PRK02889 tolB translocation pr 92.1 22 0.00048 39.2 25.9 148 73-241 220-368 (427)
102 PF10282 Lactonase: Lactonase, 91.9 20 0.00043 38.2 26.5 252 2-288 2-276 (345)
103 PRK13684 Ycf48-like protein; P 91.8 21 0.00045 38.2 23.5 181 51-273 94-279 (334)
104 KOG3215 Uncharacterized conser 91.8 2.7 5.9E-05 41.1 11.7 139 465-606 32-196 (222)
105 KOG0933 Structural maintenance 91.7 1.8 3.9E-05 51.4 12.3 79 526-604 361-467 (1174)
106 PF14870 PSII_BNR: Photosynthe 91.7 20 0.00044 37.8 23.4 221 22-296 45-270 (302)
107 KOG0310 Conserved WD40 repeat- 91.6 6.8 0.00015 43.1 15.8 212 56-314 79-301 (487)
108 cd00200 WD40 WD40 domain, foun 91.5 14 0.0003 35.7 25.4 145 57-236 105-252 (289)
109 PRK11637 AmiB activator; Provi 91.1 2.5 5.4E-05 46.8 12.6 84 470-553 65-151 (428)
110 TIGR02800 propeller_TolB tol-p 91.1 26 0.00056 38.0 24.1 148 14-191 214-362 (417)
111 KOG4673 Transcription factor T 91.0 0.98 2.1E-05 51.2 9.0 62 463-524 466-528 (961)
112 PRK10884 SH3 domain-containing 90.9 1.8 3.8E-05 43.1 9.9 81 476-573 89-169 (206)
113 PF08268 FBA_3: F-box associat 90.8 8.4 0.00018 34.9 13.8 85 156-242 3-89 (129)
114 PRK03629 tolB translocation pr 90.3 33 0.00071 37.9 23.6 146 73-240 267-413 (429)
115 PF00261 Tropomyosin: Tropomyo 90.3 0.34 7.4E-06 49.2 4.5 139 468-608 31-192 (237)
116 PRK04043 tolB translocation pr 90.1 34 0.00073 37.8 23.6 190 15-241 214-408 (419)
117 PRK11637 AmiB activator; Provi 89.7 1.6 3.5E-05 48.3 9.5 58 475-532 56-113 (428)
118 TIGR02169 SMC_prok_A chromosom 89.5 1.5 3.2E-05 54.5 10.0 42 557-598 441-482 (1164)
119 PF05096 Glu_cyclase_2: Glutam 89.4 22 0.00048 36.7 16.6 111 102-236 49-160 (264)
120 TIGR02168 SMC_prok_B chromosom 89.3 1.6 3.4E-05 54.2 10.0 20 473-492 677-696 (1179)
121 PF02897 Peptidase_S9_N: Proly 89.3 33 0.00071 37.3 19.4 206 56-287 134-357 (414)
122 PF13851 GAS: Growth-arrest sp 89.0 8.6 0.00019 38.1 13.1 73 465-537 12-84 (201)
123 PF15188 CCDC-167: Coiled-coil 89.0 0.61 1.3E-05 39.5 4.2 78 505-597 2-79 (85)
124 PF12217 End_beta_propel: Cata 88.8 15 0.00032 37.7 14.5 137 45-183 189-365 (367)
125 PF12329 TMF_DNA_bd: TATA elem 88.2 2.4 5.2E-05 35.1 7.2 66 470-535 9-74 (74)
126 PF08317 Spc7: Spc7 kinetochor 88.0 3.4 7.4E-05 44.0 10.3 134 471-608 140-292 (325)
127 smart00787 Spc7 Spc7 kinetocho 88.0 3.7 8.1E-05 43.5 10.3 18 592-609 271-288 (312)
128 COG1196 Smc Chromosome segrega 87.6 3.4 7.3E-05 51.7 11.3 53 554-606 776-828 (1163)
129 PRK11281 hypothetical protein; 87.5 2.2 4.8E-05 52.5 9.4 119 487-610 63-181 (1113)
130 PF09726 Macoilin: Transmembra 87.5 3.1 6.8E-05 48.8 10.3 33 469-501 491-523 (697)
131 COG1196 Smc Chromosome segrega 87.5 3 6.5E-05 52.1 10.8 9 578-586 814-822 (1163)
132 PRK11281 hypothetical protein; 87.2 4.5 9.8E-05 49.9 11.7 107 473-579 73-221 (1113)
133 PLN00033 photosystem II stabil 87.1 52 0.0011 36.2 22.3 201 50-294 140-363 (398)
134 PF13851 GAS: Growth-arrest sp 87.1 3.2 7E-05 41.1 8.8 110 469-578 44-171 (201)
135 PF15619 Lebercilin: Ciliary p 86.6 6.5 0.00014 38.7 10.5 117 465-605 60-191 (194)
136 PF05096 Glu_cyclase_2: Glutam 86.3 39 0.00085 34.9 16.2 160 50-240 48-210 (264)
137 PF12718 Tropomyosin_1: Tropom 86.3 11 0.00024 35.2 11.5 59 474-532 8-66 (143)
138 PRK02889 tolB translocation pr 86.0 60 0.0013 35.8 23.1 140 73-235 264-405 (427)
139 PRK09039 hypothetical protein; 86.0 4.2 9.1E-05 43.7 9.6 40 465-504 66-105 (343)
140 PF08581 Tup_N: Tup N-terminal 85.9 2.4 5.1E-05 35.6 5.9 69 489-567 6-74 (79)
141 PHA02562 46 endonuclease subun 85.8 7.8 0.00017 44.2 12.4 104 475-581 215-323 (562)
142 PF07888 CALCOCO1: Calcium bin 85.5 6.7 0.00014 44.4 11.0 135 471-606 225-385 (546)
143 COG4942 Membrane-bound metallo 85.4 8.3 0.00018 42.2 11.4 56 471-526 50-105 (420)
144 PTZ00421 coronin; Provisional 85.4 71 0.0015 36.1 24.5 155 57-240 138-297 (493)
145 PF08614 ATG16: Autophagy prot 85.1 2.1 4.4E-05 42.2 6.2 51 469-519 77-127 (194)
146 cd00094 HX Hemopexin-like repe 84.9 40 0.00087 32.8 16.1 155 104-290 13-178 (194)
147 PF00261 Tropomyosin: Tropomyo 84.9 4.2 9.1E-05 41.3 8.6 106 471-576 111-230 (237)
148 TIGR02168 SMC_prok_B chromosom 84.9 3.9 8.5E-05 50.6 10.0 11 483-493 701-711 (1179)
149 PRK01742 tolB translocation pr 84.6 69 0.0015 35.3 21.2 141 73-241 228-369 (429)
150 KOG0980 Actin-binding protein 84.4 6.1 0.00013 46.5 10.3 30 571-600 494-523 (980)
151 KOG1029 Endocytic adaptor prot 84.4 10 0.00022 44.1 11.8 121 469-608 320-460 (1118)
152 PF08268 FBA_3: F-box associat 83.9 13 0.00028 33.7 10.6 85 54-140 3-88 (129)
153 KOG0977 Nuclear envelope prote 83.3 4.7 0.0001 45.5 8.7 70 512-584 166-235 (546)
154 KOG0993 Rab5 GTPase effector R 83.2 7 0.00015 42.1 9.4 72 466-537 100-177 (542)
155 PF08317 Spc7: Spc7 kinetochor 82.9 8.5 0.00018 41.0 10.2 24 559-582 211-234 (325)
156 COG4257 Vgb Streptogramin lyas 82.8 65 0.0014 33.6 17.7 61 174-241 253-313 (353)
157 PRK04863 mukB cell division pr 82.7 4.1 8.8E-05 51.8 8.8 141 467-610 443-604 (1486)
158 PF05529 Bap31: B-cell recepto 82.6 5.7 0.00012 38.9 8.2 54 480-533 118-172 (192)
159 PRK10929 putative mechanosensi 82.1 8.3 0.00018 47.6 10.8 109 470-578 55-201 (1109)
160 PLN02939 transferase, transfer 82.1 6 0.00013 47.7 9.4 40 546-588 229-268 (977)
161 PF02191 OLF: Olfactomedin-lik 81.9 65 0.0014 33.0 16.9 159 107-290 30-206 (250)
162 PF04111 APG6: Autophagy prote 81.9 3 6.5E-05 44.3 6.3 89 489-577 45-133 (314)
163 PF09726 Macoilin: Transmembra 81.8 5.3 0.00012 46.9 8.8 40 483-522 456-502 (697)
164 KOG3478 Prefoldin subunit 6, K 81.7 5.8 0.00013 35.0 6.8 78 498-581 16-107 (120)
165 PF03178 CPSF_A: CPSF A subuni 81.6 73 0.0016 33.4 18.5 138 57-217 42-190 (321)
166 PF14870 PSII_BNR: Photosynthe 81.6 75 0.0016 33.6 20.7 201 22-273 89-295 (302)
167 KOG0161 Myosin class II heavy 81.2 6.5 0.00014 50.8 9.7 133 469-604 1002-1144(1930)
168 PF08614 ATG16: Autophagy prot 81.2 2.6 5.7E-05 41.4 5.2 102 476-605 70-171 (194)
169 PRK13169 DNA replication intia 81.2 4.2 9.1E-05 36.3 5.9 54 504-571 4-57 (110)
170 COG1520 FOG: WD40-like repeat 81.1 84 0.0018 33.7 19.4 140 15-190 79-226 (370)
171 PRK10115 protease 2; Provision 80.9 1.3E+02 0.0027 35.7 28.1 210 56-292 182-399 (686)
172 PF11365 DUF3166: Protein of u 80.7 2.7 5.8E-05 36.5 4.4 42 511-566 4-45 (96)
173 KOG0933 Structural maintenance 80.3 11 0.00023 45.2 10.3 95 483-584 297-392 (1174)
174 PF09304 Cortex-I_coil: Cortex 80.3 13 0.00027 32.9 8.4 60 468-536 25-84 (107)
175 PLN00033 photosystem II stabil 80.3 98 0.0021 34.0 21.8 87 135-241 271-364 (398)
176 PRK01742 tolB translocation pr 80.3 98 0.0021 34.0 21.1 97 73-191 272-369 (429)
177 KOG0996 Structural maintenance 80.2 11 0.00025 45.7 10.6 73 468-540 902-974 (1293)
178 PF12718 Tropomyosin_1: Tropom 80.1 12 0.00026 35.0 8.9 88 470-571 32-129 (143)
179 PF00769 ERM: Ezrin/radixin/mo 80.1 15 0.00033 37.5 10.5 87 485-571 10-96 (246)
180 PF06433 Me-amine-dh_H: Methyl 79.3 32 0.00069 36.9 12.7 71 209-291 249-324 (342)
181 TIGR03075 PQQ_enz_alc_DH PQQ-d 79.1 1.2E+02 0.0027 34.5 23.3 113 14-139 79-198 (527)
182 PF00038 Filament: Intermediat 79.1 13 0.00028 39.1 9.9 26 470-495 15-40 (312)
183 KOG0971 Microtubule-associated 79.1 16 0.00034 43.3 11.0 57 470-526 959-1015(1243)
184 PF04012 PspA_IM30: PspA/IM30 78.6 26 0.00057 34.9 11.6 67 468-534 7-77 (221)
185 PF10186 Atg14: UV radiation r 78.6 11 0.00023 39.1 9.2 97 495-591 64-160 (302)
186 PTZ00420 coronin; Provisional 78.2 1.4E+02 0.003 34.5 27.4 150 109-289 139-295 (568)
187 PF04880 NUDE_C: NUDE protein, 78.1 2.3 4.9E-05 40.8 3.5 58 469-538 3-60 (166)
188 TIGR00606 rad50 rad50. This fa 78.1 14 0.00029 47.1 11.3 23 521-543 798-820 (1311)
189 PF12795 MscS_porin: Mechanose 78.0 13 0.00027 37.8 9.2 97 509-607 39-135 (240)
190 PF03178 CPSF_A: CPSF A subuni 78.0 95 0.0021 32.5 17.3 130 108-259 42-181 (321)
191 PRK02224 chromosome segregatio 77.6 23 0.00051 42.8 12.9 55 558-614 406-460 (880)
192 PRK03918 chromosome segregatio 76.8 29 0.00062 42.0 13.3 51 558-608 385-435 (880)
193 PF12777 MT: Microtubule-bindi 76.8 5.1 0.00011 43.0 6.2 93 474-566 215-307 (344)
194 COG1579 Zn-ribbon protein, pos 76.3 23 0.00051 36.0 10.3 100 471-584 64-165 (239)
195 PF05529 Bap31: B-cell recepto 76.0 12 0.00026 36.6 8.1 62 475-536 120-189 (192)
196 PF06156 DUF972: Protein of un 75.9 8.2 0.00018 34.3 6.2 54 504-571 4-57 (107)
197 PRK09039 hypothetical protein; 75.8 27 0.00058 37.6 11.3 53 544-603 131-183 (343)
198 PLN02919 haloacid dehalogenase 75.6 2.2E+02 0.0048 35.5 21.6 158 56-236 694-891 (1057)
199 COG4942 Membrane-bound metallo 75.5 22 0.00047 39.0 10.4 125 465-593 58-207 (420)
200 KOG1899 LAR transmembrane tyro 75.4 5.3 0.00011 45.2 5.8 52 489-540 148-199 (861)
201 PF05701 WEMBL: Weak chloropla 75.2 20 0.00042 40.9 10.6 108 468-580 122-234 (522)
202 COG2433 Uncharacterized conser 75.2 18 0.00039 41.2 9.9 54 510-574 438-491 (652)
203 COG1579 Zn-ribbon protein, pos 75.0 25 0.00054 35.8 10.1 120 469-588 13-148 (239)
204 PF05546 She9_MDM33: She9 / Md 74.7 17 0.00036 36.1 8.5 70 473-542 32-126 (207)
205 PHA02562 46 endonuclease subun 74.6 20 0.00044 40.8 10.8 101 472-575 298-404 (562)
206 PF05266 DUF724: Protein of un 74.6 21 0.00045 35.1 9.2 61 509-576 125-185 (190)
207 PF11932 DUF3450: Protein of u 74.5 25 0.00055 35.9 10.4 82 488-569 50-143 (251)
208 KOG0250 DNA repair protein RAD 74.1 10 0.00022 45.9 8.0 109 465-577 660-768 (1074)
209 PF09910 DUF2139: Uncharacteri 74.1 1.2E+02 0.0027 31.9 22.1 99 72-187 77-185 (339)
210 TIGR01843 type_I_hlyD type I s 73.4 16 0.00035 39.8 9.2 12 592-603 253-264 (423)
211 PRK05431 seryl-tRNA synthetase 73.3 17 0.00037 40.3 9.3 41 510-550 68-109 (425)
212 PF08826 DMPK_coil: DMPK coile 73.3 19 0.00041 28.7 6.9 51 477-527 8-58 (61)
213 TIGR00414 serS seryl-tRNA synt 73.0 17 0.00038 40.1 9.3 43 510-552 71-114 (418)
214 PF04582 Reo_sigmaC: Reovirus 72.7 1.9 4.1E-05 45.5 1.5 22 591-612 139-160 (326)
215 PF05701 WEMBL: Weak chloropla 72.3 23 0.00051 40.3 10.3 20 586-605 338-357 (522)
216 KOG3088 Secretory carrier memb 72.1 6.3 0.00014 40.7 5.0 44 511-554 60-103 (313)
217 PF15619 Lebercilin: Ciliary p 72.0 60 0.0013 32.0 11.8 138 469-606 22-185 (194)
218 KOG0266 WD40 repeat-containing 71.9 1.7E+02 0.0037 32.6 21.3 150 56-234 257-410 (456)
219 KOG0996 Structural maintenance 71.6 20 0.00043 43.8 9.6 50 470-519 402-451 (1293)
220 PRK11028 6-phosphogluconolacto 71.5 1.3E+02 0.0029 31.3 26.6 186 73-287 102-304 (330)
221 KOG4378 Nuclear protein COP1 [ 71.3 80 0.0017 35.3 13.3 70 517-592 570-639 (673)
222 KOG0018 Structural maintenance 71.2 21 0.00045 43.2 9.6 101 470-574 649-749 (1141)
223 PRK02224 chromosome segregatio 71.2 19 0.00042 43.5 10.0 37 466-502 468-504 (880)
224 COG3823 Glutamine cyclotransfe 71.2 77 0.0017 31.8 12.0 57 50-114 49-107 (262)
225 KOG0266 WD40 repeat-containing 70.8 1.8E+02 0.0039 32.4 20.8 180 74-290 226-412 (456)
226 KOG0243 Kinesin-like protein [ 70.6 11 0.00024 45.6 7.3 20 585-604 532-551 (1041)
227 PRK04778 septation ring format 70.5 23 0.00049 40.9 9.8 81 521-601 382-464 (569)
228 PF00038 Filament: Intermediat 70.3 62 0.0014 33.9 12.5 84 465-548 46-151 (312)
229 COG0172 SerS Seryl-tRNA synthe 69.7 13 0.00028 41.0 7.2 35 517-551 70-112 (429)
230 PF06428 Sec2p: GDP/GTP exchan 69.7 2.1 4.5E-05 37.6 0.9 79 508-606 8-86 (100)
231 smart00284 OLF Olfactomedin-li 69.4 1.4E+02 0.0031 30.7 20.0 162 56-236 34-211 (255)
232 PF05816 TelA: Toxic anion res 69.4 41 0.00089 36.0 10.9 101 471-575 82-187 (333)
233 PF10267 Tmemb_cc2: Predicted 69.4 9.3 0.0002 41.7 6.0 29 557-589 276-304 (395)
234 KOG0994 Extracellular matrix g 69.3 23 0.0005 43.1 9.3 39 50-88 592-631 (1758)
235 COG3883 Uncharacterized protei 69.3 20 0.00043 37.0 7.9 9 581-589 103-111 (265)
236 cd00632 Prefoldin_beta Prefold 69.1 33 0.00072 30.1 8.5 33 468-500 8-40 (105)
237 COG4946 Uncharacterized protei 69.1 2E+02 0.0043 32.2 22.4 140 74-241 288-439 (668)
238 PF10211 Ax_dynein_light: Axon 68.8 53 0.0011 32.2 10.6 71 497-573 116-186 (189)
239 PF09730 BicD: Microtubule-ass 68.5 49 0.0011 39.0 11.9 135 465-606 119-321 (717)
240 TIGR01005 eps_transp_fam exopo 68.4 25 0.00055 41.8 10.0 22 481-502 195-216 (754)
241 PF10212 TTKRSYEDQ: Predicted 68.0 17 0.00038 40.7 7.8 57 508-578 427-483 (518)
242 PLN02320 seryl-tRNA synthetase 67.9 26 0.00056 39.6 9.2 69 485-553 105-176 (502)
243 TIGR01843 type_I_hlyD type I s 67.8 71 0.0015 34.7 12.7 20 590-609 258-277 (423)
244 KOG2321 WD40 repeat protein [G 67.4 72 0.0016 36.3 12.2 126 97-242 133-267 (703)
245 PF15254 CCDC14: Coiled-coil d 67.4 27 0.00058 40.9 9.2 65 469-537 390-463 (861)
246 KOG0316 Conserved WD40 repeat- 67.3 1.5E+02 0.0033 30.3 18.1 156 125-316 82-250 (307)
247 PF07889 DUF1664: Protein of u 67.3 33 0.00072 31.4 8.2 59 477-535 65-123 (126)
248 KOG0994 Extracellular matrix g 67.3 48 0.001 40.6 11.3 24 582-605 1686-1716(1758)
249 TIGR02680 conserved hypothetic 67.2 39 0.00085 43.1 11.7 67 468-534 256-323 (1353)
250 KOG0995 Centromere-associated 67.2 14 0.00031 41.7 6.8 137 466-602 228-388 (581)
251 COG4880 Secreted protein conta 66.9 2.1E+02 0.0045 31.8 15.1 121 49-182 379-502 (603)
252 TIGR02658 TTQ_MADH_Hv methylam 66.8 1.9E+02 0.0042 31.2 28.9 246 14-290 27-333 (352)
253 PRK04863 mukB cell division pr 66.7 44 0.00095 42.9 11.9 12 539-550 424-435 (1486)
254 KOG0980 Actin-binding protein 66.4 17 0.00037 42.9 7.5 51 482-532 468-518 (980)
255 KOG2048 WD40 repeat protein [G 66.4 2.6E+02 0.0056 32.5 18.6 161 49-241 386-559 (691)
256 PRK02793 phi X174 lysis protei 66.4 12 0.00026 30.7 4.7 19 589-607 40-58 (72)
257 PLN02678 seryl-tRNA synthetase 66.2 30 0.00065 38.6 9.2 41 512-552 75-116 (448)
258 PF05266 DUF724: Protein of un 66.0 21 0.00046 35.0 7.2 57 551-607 125-181 (190)
259 PF04156 IncA: IncA protein; 65.6 91 0.002 30.1 11.7 51 471-521 100-150 (191)
260 KOG4593 Mitotic checkpoint pro 65.6 56 0.0012 37.9 11.2 103 472-591 121-224 (716)
261 KOG0289 mRNA splicing factor [ 65.6 2.1E+02 0.0045 31.7 14.8 120 74-217 370-494 (506)
262 PF07106 TBPIP: Tat binding pr 65.5 60 0.0013 31.0 10.2 88 468-573 74-161 (169)
263 TIGR03185 DNA_S_dndD DNA sulfu 65.3 26 0.00056 41.1 9.0 64 469-532 212-286 (650)
264 COG4026 Uncharacterized protei 65.0 28 0.00062 34.7 7.7 29 507-535 134-162 (290)
265 PLN02919 haloacid dehalogenase 64.9 3.6E+02 0.0078 33.7 32.2 212 50-290 627-891 (1057)
266 cd00089 HR1 Protein kinase C-r 64.5 22 0.00048 28.9 6.0 56 480-535 9-69 (72)
267 smart00787 Spc7 Spc7 kinetocho 64.2 45 0.00097 35.4 9.7 43 557-599 218-260 (312)
268 KOG4571 Activating transcripti 64.2 28 0.00061 36.1 7.9 53 505-572 238-291 (294)
269 cd07643 I-BAR_IMD_MIM Inverse 63.9 75 0.0016 32.0 10.5 57 555-613 159-229 (231)
270 PF13088 BNR_2: BNR repeat-lik 63.8 1.5E+02 0.0033 29.8 13.6 156 52-214 114-275 (275)
271 KOG0978 E3 ubiquitin ligase in 63.7 30 0.00064 40.4 8.8 97 478-574 522-625 (698)
272 TIGR03074 PQQ_membr_DH membran 63.7 3.2E+02 0.007 32.8 25.4 33 50-89 188-222 (764)
273 TIGR01554 major_cap_HK97 phage 63.6 32 0.0007 37.3 8.9 35 509-543 35-69 (378)
274 KOG0999 Microtubule-associated 63.5 74 0.0016 36.0 11.3 122 469-599 197-374 (772)
275 PF05622 HOOK: HOOK protein; 63.2 2.4 5.2E-05 50.2 0.0 126 470-605 197-328 (713)
276 PF01576 Myosin_tail_1: Myosin 63.2 2.4 5.2E-05 51.2 0.0 125 479-608 573-737 (859)
277 KOG1036 Mitotic spindle checkp 63.1 2.1E+02 0.0045 30.3 16.9 156 42-236 8-166 (323)
278 KOG1664 Vacuolar H+-ATPase V1 63.0 33 0.00071 33.9 7.6 97 465-579 49-159 (220)
279 KOG1036 Mitotic spindle checkp 62.9 1.7E+02 0.0037 30.9 13.2 131 125-291 36-167 (323)
280 PF13256 DUF4047: Domain of un 62.7 44 0.00096 30.1 7.8 65 493-574 30-102 (125)
281 KOG0649 WD40 repeat protein [G 62.6 1.9E+02 0.0041 29.7 18.5 136 52-216 122-263 (325)
282 COG1566 EmrA Multidrug resista 62.6 33 0.00073 37.0 8.5 108 469-576 94-209 (352)
283 TIGR03007 pepcterm_ChnLen poly 62.3 39 0.00084 38.0 9.5 65 509-573 311-378 (498)
284 PF02403 Seryl_tRNA_N: Seryl-t 62.1 48 0.001 29.0 8.2 66 483-548 39-108 (108)
285 PRK03918 chromosome segregatio 61.9 81 0.0018 38.1 12.8 56 490-545 189-244 (880)
286 PF13870 DUF4201: Domain of un 61.9 54 0.0012 31.6 9.2 55 465-519 76-130 (177)
287 PF14197 Cep57_CLD_2: Centroso 61.8 47 0.001 27.1 7.3 31 505-535 30-60 (69)
288 KOG4643 Uncharacterized coiled 61.6 1E+02 0.0022 37.5 12.5 125 454-597 154-334 (1195)
289 PF05615 THOC7: Tho complex su 61.4 38 0.00083 31.2 7.8 80 477-556 50-133 (139)
290 PRK01156 chromosome segregatio 61.2 76 0.0017 38.6 12.4 25 516-540 644-668 (895)
291 PRK10929 putative mechanosensi 61.1 32 0.0007 42.6 9.0 111 485-608 46-160 (1109)
292 COG0419 SbcC ATPase involved i 61.1 1E+02 0.0022 37.8 13.3 69 504-574 406-491 (908)
293 TIGR01000 bacteriocin_acc bact 61.1 32 0.00068 38.4 8.4 20 556-575 242-261 (457)
294 TIGR03321 alt_F1F0_F0_B altern 61.0 78 0.0017 32.3 10.6 29 476-504 32-60 (246)
295 PF10174 Cast: RIM-binding pro 60.9 54 0.0012 39.1 10.5 132 475-606 331-486 (775)
296 PF12325 TMF_TATA_bd: TATA ele 60.8 1.1E+02 0.0023 27.9 10.2 71 463-533 13-86 (120)
297 KOG0649 WD40 repeat protein [G 60.7 2.1E+02 0.0045 29.5 15.3 112 107-240 126-242 (325)
298 COG0823 TolB Periplasmic compo 60.7 2.7E+02 0.0058 30.9 15.5 107 73-193 262-369 (425)
299 KOG4593 Mitotic checkpoint pro 60.7 95 0.0021 36.2 11.9 131 474-607 462-615 (716)
300 PF09910 DUF2139: Uncharacteri 60.6 2.3E+02 0.005 30.0 17.9 100 122-237 76-185 (339)
301 PF04912 Dynamitin: Dynamitin 60.4 14 0.00031 40.3 5.5 19 592-610 209-227 (388)
302 PF03148 Tektin: Tektin family 60.4 64 0.0014 35.3 10.4 100 502-601 252-368 (384)
303 PRK04406 hypothetical protein; 60.2 18 0.00039 30.0 4.7 34 559-606 27-60 (75)
304 PF10168 Nup88: Nuclear pore c 60.2 1.5E+02 0.0032 35.3 13.9 54 481-534 566-619 (717)
305 PF12325 TMF_TATA_bd: TATA ele 60.2 74 0.0016 28.9 9.0 62 470-535 34-99 (120)
306 PF03962 Mnd1: Mnd1 family; I 60.1 48 0.001 32.5 8.5 67 465-532 61-127 (188)
307 PF14583 Pectate_lyase22: Olig 60.0 2.7E+02 0.0058 30.6 20.1 102 110-219 202-303 (386)
308 PF01166 TSC22: TSC-22/dip/bun 59.8 3.4 7.4E-05 32.3 0.3 31 521-565 13-43 (59)
309 KOG0243 Kinesin-like protein [ 59.8 47 0.001 40.4 9.7 100 475-575 450-550 (1041)
310 PF14362 DUF4407: Domain of un 59.7 81 0.0018 33.0 10.8 108 465-581 127-246 (301)
311 COG1520 FOG: WD40-like repeat 59.1 2.5E+02 0.0055 30.0 21.6 185 15-232 122-319 (370)
312 COG4257 Vgb Streptogramin lyas 58.8 1.4E+02 0.003 31.3 11.5 113 55-192 198-314 (353)
313 PRK02119 hypothetical protein; 58.4 20 0.00043 29.6 4.6 35 559-607 25-59 (73)
314 PF07926 TPR_MLP1_2: TPR/MLP1/ 58.2 1.5E+02 0.0033 27.1 11.4 46 557-605 73-118 (132)
315 COG0823 TolB Periplasmic compo 58.0 2.7E+02 0.0059 30.9 14.9 106 123-242 261-368 (425)
316 PF06005 DUF904: Protein of un 57.9 24 0.00052 29.0 5.0 47 510-563 6-52 (72)
317 TIGR03752 conj_TIGR03752 integ 57.9 57 0.0012 36.4 9.4 66 469-534 69-135 (472)
318 TIGR01010 BexC_CtrB_KpsE polys 57.9 69 0.0015 34.4 10.2 111 484-602 174-288 (362)
319 KOG3313 Molecular chaperone Pr 57.8 52 0.0011 31.7 7.8 86 469-568 40-160 (187)
320 PF14197 Cep57_CLD_2: Centroso 57.8 61 0.0013 26.4 7.3 59 469-527 8-66 (69)
321 PRK00409 recombination and DNA 57.5 1E+02 0.0022 37.0 12.3 8 535-542 569-576 (782)
322 PF13870 DUF4201: Domain of un 57.3 47 0.001 31.9 7.9 59 477-535 46-104 (177)
323 PF10498 IFT57: Intra-flagella 57.0 76 0.0016 34.4 10.1 135 469-608 216-351 (359)
324 TIGR03185 DNA_S_dndD DNA sulfu 56.9 38 0.00082 39.7 8.4 71 471-541 389-461 (650)
325 PRK00295 hypothetical protein; 56.8 23 0.0005 28.7 4.7 34 559-606 21-54 (68)
326 PRK04325 hypothetical protein; 56.8 22 0.00048 29.4 4.7 19 589-607 41-59 (74)
327 PF10174 Cast: RIM-binding pro 56.7 71 0.0015 38.2 10.5 100 469-571 468-569 (775)
328 PRK05759 F0F1 ATP synthase sub 56.6 71 0.0015 29.8 8.8 45 475-519 30-74 (156)
329 PF10146 zf-C4H2: Zinc finger- 56.5 66 0.0014 32.6 8.9 71 465-535 31-101 (230)
330 TIGR02338 gimC_beta prefoldin, 56.4 89 0.0019 27.6 8.9 34 468-501 12-45 (110)
331 PF00769 ERM: Ezrin/radixin/mo 56.3 28 0.00061 35.6 6.4 41 502-542 83-123 (246)
332 KOG3856 Uncharacterized conser 56.1 20 0.00043 32.4 4.5 31 507-537 9-39 (135)
333 PF04012 PspA_IM30: PspA/IM30 56.1 61 0.0013 32.3 8.7 66 477-543 88-153 (221)
334 PF04849 HAP1_N: HAP1 N-termin 55.8 68 0.0015 33.8 9.1 28 512-539 245-272 (306)
335 cd07666 BAR_SNX7 The Bin/Amphi 55.7 1.2E+02 0.0025 31.1 10.6 91 481-572 100-199 (243)
336 PF14915 CCDC144C: CCDC144C pr 55.6 63 0.0014 33.8 8.7 72 469-540 217-303 (305)
337 PRK13729 conjugal transfer pil 55.6 31 0.00068 38.4 6.9 22 510-531 99-120 (475)
338 PF04899 MbeD_MobD: MbeD/MobD 55.5 52 0.0011 27.0 6.5 52 484-535 3-55 (70)
339 PF03962 Mnd1: Mnd1 family; I 55.5 62 0.0013 31.7 8.4 70 465-535 53-123 (188)
340 KOG0265 U5 snRNP-specific prot 55.3 2.6E+02 0.0056 29.5 12.9 140 107-290 58-207 (338)
341 PRK14474 F0F1 ATP synthase sub 55.2 67 0.0014 32.9 9.0 71 476-546 32-104 (250)
342 TIGR03007 pepcterm_ChnLen poly 55.0 90 0.002 35.1 10.9 31 473-503 204-234 (498)
343 KOG2048 WD40 repeat protein [G 54.8 4E+02 0.0087 31.0 24.1 124 143-288 422-549 (691)
344 PF06705 SF-assemblin: SF-asse 54.8 70 0.0015 32.6 9.1 22 570-591 203-224 (247)
345 PF12795 MscS_porin: Mechanose 54.6 95 0.0021 31.4 10.0 109 473-581 31-183 (240)
346 PF06637 PV-1: PV-1 protein (P 54.5 36 0.00079 36.6 6.9 33 469-501 288-327 (442)
347 KOG4378 Nuclear protein COP1 [ 54.4 2.2E+02 0.0048 32.1 12.8 89 125-234 188-281 (673)
348 PF07111 HCR: Alpha helical co 54.3 90 0.002 36.4 10.4 103 484-605 539-652 (739)
349 KOG3850 Predicted membrane pro 54.1 72 0.0016 34.4 8.9 57 478-539 304-370 (455)
350 PF05622 HOOK: HOOK protein; 54.0 4.2 9.2E-05 48.1 0.0 50 480-530 291-340 (713)
351 KOG4001 Axonemal dynein light 53.9 72 0.0016 31.4 8.2 18 469-486 167-184 (259)
352 COG1382 GimC Prefoldin, chaper 53.9 1.1E+02 0.0024 27.8 8.9 33 469-501 16-48 (119)
353 PF05010 TACC: Transforming ac 53.5 81 0.0018 31.4 8.9 42 465-506 43-88 (207)
354 KOG2391 Vacuolar sorting prote 53.3 83 0.0018 33.5 9.2 88 466-557 210-298 (365)
355 PF05667 DUF812: Protein of un 53.3 70 0.0015 37.1 9.6 65 469-534 324-388 (594)
356 PRK00846 hypothetical protein; 53.1 29 0.00064 28.9 4.8 18 589-606 45-62 (77)
357 PRK13729 conjugal transfer pil 53.1 30 0.00064 38.6 6.2 42 497-538 79-120 (475)
358 KOG0291 WD40-repeat-containing 53.0 4.6E+02 0.01 31.2 24.0 243 1-299 364-624 (893)
359 PF15070 GOLGA2L5: Putative go 52.7 1.5E+02 0.0032 34.6 12.1 119 464-583 78-221 (617)
360 PF00170 bZIP_1: bZIP transcri 52.6 38 0.00082 26.8 5.3 22 553-574 43-64 (64)
361 PF05557 MAD: Mitotic checkpoi 52.5 53 0.0011 39.0 8.8 77 503-580 498-582 (722)
362 KOG0293 WD40 repeat-containing 52.4 3.4E+02 0.0074 29.9 13.7 134 74-240 292-430 (519)
363 PF00435 Spectrin: Spectrin re 52.0 79 0.0017 26.2 7.7 58 515-575 41-98 (105)
364 PF11559 ADIP: Afadin- and alp 51.8 33 0.00072 32.1 5.7 29 508-536 73-101 (151)
365 PF15525 DUF4652: Domain of un 51.8 2.5E+02 0.0054 27.7 12.0 69 121-193 85-158 (200)
366 PF04136 Sec34: Sec34-like fam 51.8 1.8E+02 0.0038 27.6 10.6 97 468-564 2-113 (157)
367 KOG0978 E3 ubiquitin ligase in 51.7 1.1E+02 0.0025 35.8 10.9 106 478-604 501-620 (698)
368 TIGR03074 PQQ_membr_DH membran 51.3 5.1E+02 0.011 31.2 19.7 32 101-139 188-221 (764)
369 KOG1962 B-cell receptor-associ 50.8 50 0.0011 33.0 6.9 62 478-540 119-180 (216)
370 PF02185 HR1: Hr1 repeat; Int 50.8 66 0.0014 26.0 6.6 53 483-535 4-60 (70)
371 COG4946 Uncharacterized protei 50.7 4.1E+02 0.0089 29.9 21.4 148 14-191 287-439 (668)
372 KOG3881 Uncharacterized conser 50.5 2.9E+02 0.0063 30.1 12.8 154 1-184 163-321 (412)
373 KOG0999 Microtubule-associated 50.5 1.3E+02 0.0027 34.2 10.4 24 553-576 110-133 (772)
374 PRK15422 septal ring assembly 50.5 1.5E+02 0.0033 24.8 8.7 68 467-534 5-72 (79)
375 PF08826 DMPK_coil: DMPK coile 50.5 1.1E+02 0.0024 24.4 7.4 55 487-541 4-58 (61)
376 PF04380 BMFP: Membrane fusoge 50.4 1.3E+02 0.0028 25.1 8.4 69 466-536 6-78 (79)
377 TIGR01010 BexC_CtrB_KpsE polys 50.2 1.2E+02 0.0026 32.6 10.5 24 554-577 282-305 (362)
378 KOG0316 Conserved WD40 repeat- 49.9 1.4E+02 0.0031 30.5 9.8 108 55-188 69-178 (307)
379 PF04102 SlyX: SlyX; InterPro 49.9 15 0.00033 29.8 2.6 34 558-605 19-52 (69)
380 KOG0289 mRNA splicing factor [ 49.8 4E+02 0.0087 29.5 16.1 120 149-294 348-469 (506)
381 KOG4403 Cell surface glycoprot 49.6 85 0.0019 34.4 8.7 96 482-578 254-368 (575)
382 PF06008 Laminin_I: Laminin Do 49.6 1.4E+02 0.0029 30.7 10.3 96 467-571 46-141 (264)
383 PRK09841 cryptic autophosphory 49.2 1E+02 0.0022 36.6 10.5 67 469-536 256-325 (726)
384 PLN03215 ascorbic acid mannose 49.1 3.9E+02 0.0084 29.2 15.6 137 82-239 189-352 (373)
385 PF15070 GOLGA2L5: Putative go 48.9 57 0.0012 38.0 8.0 115 477-594 157-309 (617)
386 COG2433 Uncharacterized conser 48.9 67 0.0014 36.8 8.2 36 470-505 426-461 (652)
387 PF09304 Cortex-I_coil: Cortex 48.5 25 0.00054 31.1 3.9 68 508-575 9-76 (107)
388 COG4372 Uncharacterized protei 48.4 2.7E+02 0.0059 30.3 12.1 139 468-608 146-328 (499)
389 PF07439 DUF1515: Protein of u 48.3 44 0.00095 29.6 5.3 72 483-571 4-75 (112)
390 PF04740 LXG: LXG domain of WX 47.9 1.2E+02 0.0027 29.5 9.4 30 489-518 19-48 (204)
391 TIGR00998 8a0101 efflux pump m 47.9 1.3E+02 0.0028 31.6 10.2 14 596-609 197-210 (334)
392 PF02050 FliJ: Flagellar FliJ 47.7 44 0.00096 28.9 5.6 27 555-581 57-83 (123)
393 PRK14472 F0F1 ATP synthase sub 47.5 1.2E+02 0.0025 29.2 8.9 32 475-506 44-75 (175)
394 COG4880 Secreted protein conta 47.4 3.6E+02 0.0079 29.9 13.0 179 11-241 403-598 (603)
395 PRK15136 multidrug efflux syst 47.4 82 0.0018 34.4 8.7 19 484-502 124-142 (390)
396 PF15188 CCDC-167: Coiled-coil 47.1 60 0.0013 27.7 5.8 49 480-535 5-56 (85)
397 PRK13461 F0F1 ATP synthase sub 47.0 1.3E+02 0.0027 28.4 8.9 29 477-505 33-61 (159)
398 PRK00736 hypothetical protein; 46.9 41 0.00089 27.3 4.7 33 560-606 22-54 (68)
399 PF02239 Cytochrom_D1: Cytochr 46.8 4.1E+02 0.0089 28.8 17.5 183 14-240 16-209 (369)
400 PF15525 DUF4652: Domain of un 46.6 2.7E+02 0.0059 27.4 10.9 68 13-89 87-156 (200)
401 KOG0249 LAR-interacting protei 46.5 91 0.002 36.4 8.8 41 499-539 200-240 (916)
402 TIGR01005 eps_transp_fam exopo 46.5 86 0.0019 37.3 9.4 21 556-576 344-364 (754)
403 COG0216 PrfA Protein chain rel 46.2 46 0.00099 35.5 6.1 22 471-492 5-26 (363)
404 PF05557 MAD: Mitotic checkpoi 46.2 8.3 0.00018 45.7 0.8 129 477-605 368-530 (722)
405 PF10481 CENP-F_N: Cenp-F N-te 46.2 87 0.0019 32.4 7.8 51 478-528 16-66 (307)
406 COG4026 Uncharacterized protei 46.1 95 0.002 31.1 7.8 71 465-535 131-204 (290)
407 KOG1853 LIS1-interacting prote 45.9 3.5E+02 0.0076 27.7 12.7 92 512-614 95-193 (333)
408 COG1842 PspA Phage shock prote 45.6 2.1E+02 0.0045 29.0 10.5 69 467-535 7-79 (225)
409 KOG4673 Transcription factor T 45.5 1.4E+02 0.003 34.8 10.0 80 470-549 413-512 (961)
410 KOG0772 Uncharacterized conser 45.4 5.1E+02 0.011 29.5 20.4 197 55-288 225-446 (641)
411 PF10473 CENP-F_leu_zip: Leuci 45.3 1.3E+02 0.0028 28.1 8.3 46 499-544 57-109 (140)
412 COG0216 PrfA Protein chain rel 45.3 64 0.0014 34.4 6.9 88 486-574 6-100 (363)
413 TIGR01000 bacteriocin_acc bact 45.1 1.4E+02 0.0031 33.2 10.4 34 470-503 169-202 (457)
414 PLN03188 kinesin-12 family pro 45.0 1.2E+02 0.0026 37.9 10.0 115 465-604 862-1005(1320)
415 PRK10636 putative ABC transpor 45.0 40 0.00088 39.4 6.2 34 502-535 599-632 (638)
416 PF04645 DUF603: Protein of un 44.8 2.2E+02 0.0048 27.4 9.7 67 502-573 94-161 (181)
417 PRK08476 F0F1 ATP synthase sub 44.5 2E+02 0.0044 26.6 9.7 96 478-599 36-132 (141)
418 KOG4603 TBP-1 interacting prot 44.4 1.2E+02 0.0025 29.3 7.8 62 475-537 81-145 (201)
419 KOG3850 Predicted membrane pro 44.3 25 0.00055 37.7 3.9 18 591-608 323-340 (455)
420 PRK04778 septation ring format 44.2 2.3E+02 0.0049 32.7 12.0 57 474-530 283-339 (569)
421 KOG4360 Uncharacterized coiled 44.1 1.7E+02 0.0036 33.0 10.1 18 523-540 255-272 (596)
422 KOG1003 Actin filament-coating 44.0 2.4E+02 0.0052 27.9 10.1 94 468-575 76-183 (205)
423 PF04156 IncA: IncA protein; 44.0 2.2E+02 0.0047 27.5 10.3 60 469-535 91-150 (191)
424 KOG2077 JNK/SAPK-associated pr 44.0 86 0.0019 35.6 8.0 83 469-556 312-397 (832)
425 KOG4674 Uncharacterized conser 44.0 1E+02 0.0022 40.0 9.6 93 507-609 797-889 (1822)
426 PTZ00420 coronin; Provisional 43.9 5.7E+02 0.012 29.6 25.0 111 159-288 137-249 (568)
427 PF06428 Sec2p: GDP/GTP exchan 43.8 45 0.00097 29.3 4.8 54 511-571 33-86 (100)
428 TIGR00998 8a0101 efflux pump m 43.7 1E+02 0.0022 32.4 8.6 18 556-573 185-202 (334)
429 PF00901 Orbi_VP5: Orbivirus o 43.7 53 0.0012 36.6 6.3 103 470-572 58-173 (508)
430 PF05700 BCAS2: Breast carcino 43.6 1.3E+02 0.0029 30.1 8.9 80 478-571 134-217 (221)
431 PRK06231 F0F1 ATP synthase sub 43.5 1.4E+02 0.0031 29.6 8.9 64 478-543 77-144 (205)
432 PF05911 DUF869: Plant protein 43.4 1.1E+02 0.0023 36.7 9.2 68 470-537 621-688 (769)
433 PF12329 TMF_DNA_bd: TATA elem 43.3 37 0.0008 28.0 4.0 60 512-574 2-64 (74)
434 PF06005 DUF904: Protein of un 43.3 1.9E+02 0.004 23.8 8.6 22 469-490 7-28 (72)
435 KOG3433 Protein involved in me 43.2 1.6E+02 0.0035 28.6 8.7 58 470-535 85-143 (203)
436 PRK07353 F0F1 ATP synthase sub 43.2 1.7E+02 0.0036 26.8 8.9 44 478-528 34-77 (140)
437 TIGR00606 rad50 rad50. This fa 43.2 1.3E+02 0.0027 38.5 10.6 65 470-534 796-862 (1311)
438 PF02239 Cytochrom_D1: Cytochr 42.9 4.7E+02 0.01 28.3 17.4 197 73-290 100-305 (369)
439 KOG0250 DNA repair protein RAD 42.9 1.4E+02 0.0031 36.5 10.1 106 475-584 290-399 (1074)
440 KOG0315 G-protein beta subunit 42.8 4E+02 0.0087 27.5 20.3 195 56-289 51-247 (311)
441 PF15397 DUF4618: Domain of un 42.5 86 0.0019 32.3 7.3 32 513-547 79-110 (258)
442 PF14131 DUF4298: Domain of un 42.5 35 0.00076 29.2 3.9 49 510-558 2-50 (90)
443 KOG1962 B-cell receptor-associ 42.2 71 0.0015 32.0 6.4 17 510-526 181-197 (216)
444 KOG4797 Transcriptional regula 42.2 29 0.00063 30.6 3.3 33 520-566 65-97 (123)
445 PF10212 TTKRSYEDQ: Predicted 42.1 1.4E+02 0.003 33.8 9.3 72 463-534 409-481 (518)
446 TIGR02680 conserved hypothetic 42.1 89 0.0019 40.0 8.9 50 470-519 273-322 (1353)
447 PF15030 DUF4527: Protein of u 42.0 1.5E+02 0.0033 30.1 8.6 38 507-544 50-94 (277)
448 KOG1842 FYVE finger-containing 41.8 47 0.001 36.5 5.5 68 468-535 328-411 (505)
449 KOG1853 LIS1-interacting prote 41.7 2E+02 0.0043 29.5 9.4 108 469-588 16-133 (333)
450 PRK10476 multidrug resistance 41.7 86 0.0019 33.4 7.7 65 474-538 139-203 (346)
451 PRK10476 multidrug resistance 41.5 1.8E+02 0.004 30.9 10.2 20 590-609 195-214 (346)
452 TIGR02231 conserved hypothetic 41.5 1.6E+02 0.0034 33.5 10.2 18 557-574 152-169 (525)
453 CHL00019 atpF ATP synthase CF0 41.4 1.6E+02 0.0034 28.5 8.8 29 478-506 53-81 (184)
454 smart00284 OLF Olfactomedin-li 41.4 4.2E+02 0.0091 27.3 18.3 73 107-191 34-110 (255)
455 TIGR03545 conserved hypothetic 41.3 91 0.002 35.9 8.1 69 465-533 167-237 (555)
456 PRK03598 putative efflux pump 41.3 1.1E+02 0.0024 32.3 8.4 17 557-573 185-201 (331)
457 PF05278 PEARLI-4: Arabidopsis 41.2 1.5E+02 0.0033 30.7 8.8 15 361-375 114-128 (269)
458 PF05911 DUF869: Plant protein 41.1 1.9E+02 0.0042 34.6 10.8 77 476-573 81-164 (769)
459 COG1842 PspA Phage shock prote 41.1 1.2E+02 0.0026 30.6 8.1 67 478-545 90-156 (225)
460 COG2900 SlyX Uncharacterized p 41.0 1.9E+02 0.0041 23.8 7.5 37 559-609 24-60 (72)
461 PF14193 DUF4315: Domain of un 40.9 54 0.0012 27.8 4.6 44 524-567 17-62 (83)
462 PRK11448 hsdR type I restricti 40.8 95 0.0021 38.9 8.7 67 471-537 147-213 (1123)
463 PF13514 AAA_27: AAA domain 40.7 1.8E+02 0.0038 36.6 11.1 11 595-605 920-930 (1111)
464 PRK07352 F0F1 ATP synthase sub 40.6 1.7E+02 0.0038 27.9 8.9 30 477-506 47-76 (174)
465 KOG0296 Angio-associated migra 40.5 5.1E+02 0.011 28.1 20.1 246 1-297 78-326 (399)
466 KOG0963 Transcription factor/C 40.5 1.5E+02 0.0031 34.3 9.2 21 583-603 247-267 (629)
467 PRK01156 chromosome segregatio 40.3 1.7E+02 0.0037 35.6 10.8 26 556-581 673-698 (895)
468 PRK13460 F0F1 ATP synthase sub 40.3 1.8E+02 0.0039 27.8 8.9 29 478-506 45-73 (173)
469 PRK09174 F0F1 ATP synthase sub 39.8 2.1E+02 0.0046 28.4 9.5 46 483-528 80-125 (204)
470 cd07653 F-BAR_CIP4-like The F- 39.7 1.7E+02 0.0036 29.6 9.1 40 478-517 110-149 (251)
471 PF11932 DUF3450: Protein of u 39.5 3.1E+02 0.0068 27.8 11.1 105 468-578 58-167 (251)
472 KOG0995 Centromere-associated 39.5 1.3E+02 0.0028 34.3 8.6 101 475-576 261-365 (581)
473 PF14662 CCDC155: Coiled-coil 39.5 2.3E+02 0.0049 27.9 9.2 122 474-606 23-144 (193)
474 PF06810 Phage_GP20: Phage min 39.5 1.6E+02 0.0035 27.9 8.2 51 471-525 18-68 (155)
475 PF07433 DUF1513: Protein of u 39.2 5E+02 0.011 27.6 12.8 116 146-274 2-121 (305)
476 PRK10361 DNA recombination pro 39.0 3E+02 0.0065 31.1 11.4 117 473-607 29-155 (475)
477 PF03148 Tektin: Tektin family 38.9 1E+02 0.0022 33.7 7.8 97 470-566 248-368 (384)
478 KOG0308 Conserved WD40 repeat- 38.9 4.9E+02 0.011 30.4 12.9 69 158-236 128-204 (735)
479 KOG0318 WD40 repeat stress pro 38.7 4.1E+02 0.009 30.2 12.1 151 44-219 440-593 (603)
480 PF10211 Ax_dynein_light: Axon 38.6 1.5E+02 0.0032 29.1 8.0 33 470-502 124-156 (189)
481 KOG2264 Exostosin EXT1L [Signa 38.5 1.1E+02 0.0025 34.7 7.8 65 477-541 83-147 (907)
482 PRK14472 F0F1 ATP synthase sub 38.4 2.2E+02 0.0048 27.2 9.2 41 484-524 46-86 (175)
483 PRK11519 tyrosine kinase; Prov 38.4 1.9E+02 0.004 34.5 10.4 95 472-577 303-397 (719)
484 PRK11578 macrolide transporter 38.3 1.5E+02 0.0032 31.9 9.0 33 471-503 97-129 (370)
485 KOG0278 Serine/threonine kinas 38.2 4.8E+02 0.01 27.1 13.4 85 123-220 204-289 (334)
486 KOG4182 Uncharacterized conser 38.1 1.2E+02 0.0027 33.7 7.9 136 465-605 37-191 (828)
487 PF11559 ADIP: Afadin- and alp 37.9 1.9E+02 0.0042 26.8 8.6 9 593-601 141-149 (151)
488 TIGR02977 phageshock_pspA phag 37.7 4.3E+02 0.0092 26.3 12.3 36 486-521 44-79 (219)
489 PF06818 Fez1: Fez1; InterPro 37.6 1.8E+02 0.0039 28.9 8.4 53 483-535 34-93 (202)
490 PRK10698 phage shock protein P 37.6 1.4E+02 0.0031 30.0 8.0 58 485-543 97-154 (222)
491 KOG0612 Rho-associated, coiled 37.4 2.1E+02 0.0046 35.6 10.4 77 502-578 502-581 (1317)
492 CHL00118 atpG ATP synthase CF0 37.3 3.5E+02 0.0075 25.4 10.2 103 482-603 48-151 (156)
493 KOG2856 Adaptor protein PACSIN 37.2 1.6E+02 0.0034 31.8 8.3 65 493-577 180-251 (472)
494 PRK08475 F0F1 ATP synthase sub 37.2 2.2E+02 0.0048 27.1 9.0 65 478-544 51-119 (167)
495 PF15035 Rootletin: Ciliary ro 36.9 1.7E+02 0.0037 28.5 8.2 27 465-491 15-41 (182)
496 smart00030 CLb CLUSTERIN Beta 36.8 78 0.0017 31.2 5.6 41 481-521 37-77 (206)
497 PF11134 Phage_stabilise: Phag 36.8 6.4E+02 0.014 28.1 17.6 208 54-295 63-323 (469)
498 PRK13453 F0F1 ATP synthase sub 36.8 2.2E+02 0.0048 27.3 8.9 75 470-544 39-115 (173)
499 COG1770 PtrB Protease II [Amin 36.6 7.7E+02 0.017 29.0 18.7 238 9-270 243-482 (682)
500 COG2706 3-carboxymuconate cycl 36.6 5.7E+02 0.012 27.5 26.5 285 2-315 5-314 (346)
No 1
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=2.3e-41 Score=330.67 Aligned_cols=311 Identities=22% Similarity=0.361 Sum_probs=263.0
Q ss_pred CCcccceEEEEECCEEEEEcccCCCCC----CceEEEEEECCCCcEEEeecc----------CCCCCCcceeEEEEECCE
Q 007111 44 IPACRGHSLISWGKKVLLVGGKTDSGS----DRVSVWTFDTETECWSVVEAK----------GDIPVARSGHTVVRASSV 109 (617)
Q Consensus 44 ~p~r~~hs~v~~g~~lyV~GG~~~~~~----~~~~v~~yd~~t~~W~~~~~~----------g~~P~~R~~~s~~~~~~~ 109 (617)
.|+|.+|+++.+|.+||-|||+..+.. ...+|.++|..+-+|.++++. .-.|..|++|+++.++++
T Consensus 11 GPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~ 90 (392)
T KOG4693|consen 11 GPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDK 90 (392)
T ss_pred CcccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcce
Confidence 578899999999999999999965432 345899999999999999862 125678999999999999
Q ss_pred EEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCC--CCCCCCeEEEEECCCCcE
Q 007111 110 LILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSS--KSKTLNDLYSLDFETMIW 187 (617)
Q Consensus 110 IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~--~~~~~n~v~~yD~~t~~W 187 (617)
+|++||++......|.+|.|||++++|.+....|-+|.+|.+|++|++++. +|||||+. ...+.++++.+|+.|++|
T Consensus 91 ~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~-MyiFGGye~~a~~FS~d~h~ld~~TmtW 169 (392)
T KOG4693|consen 91 AYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQ-MYIFGGYEEDAQRFSQDTHVLDFATMTW 169 (392)
T ss_pred EEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcE-EEEecChHHHHHhhhccceeEeccceee
Confidence 999999999777899999999999999999999999999999999999999 99999995 357789999999999999
Q ss_pred EEeecCCCCCCCCcceEEEEECCEEEEEecCCCCC---------ccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEE
Q 007111 188 TRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK---------RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVL 258 (617)
Q Consensus 188 ~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~---------~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~ 258 (617)
+.+...+.+|.-|.+|+++++++.+|||||..+.. +-+++..+|+.+..|...+. ..-.|.+|.+||+.+
T Consensus 170 r~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~-~~~~P~GRRSHS~fv 248 (392)
T KOG4693|consen 170 REMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPE-NTMKPGGRRSHSTFV 248 (392)
T ss_pred eehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCC-CCcCCCcccccceEE
Confidence 99999999999999999999999999999986542 34678899999999999753 334588999999988
Q ss_pred EeecCCcEEEEEcCCCCCC---CCeEEEEECCCCcccc----------ccccccCccCCceeeeccCCCCcccccccCCC
Q 007111 259 VQHKEKDFLVAFGGIKKEP---SNQVEVLSIEKNESSM----------GRRSTPNAKGPGQLLFEKRSSSTGLACQLGNG 325 (617)
Q Consensus 259 v~~~~~~~L~I~GG~~~~~---~~dV~vyd~~~~~W~~----------~w~~~~~~~~~~v~vfGG~~~~~~~~~~~~~~ 325 (617)
.. +.+|+|||+++.. .+++|+||+.+..|.. +++.|+...+.++++|||.+.-. .|. .
T Consensus 249 Yn----g~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP~~---~~~--~ 319 (392)
T KOG4693|consen 249 YN----GKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSPLP---CHP--L 319 (392)
T ss_pred Ec----ceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCCCCC---CCC--C
Confidence 86 8899999998754 8999999999999943 67778887999999999997622 111 1
Q ss_pred CCCCCCchhhhhhhHhHHhhcCCCcccccccccCCCCCCCcccchhhhhhh
Q 007111 326 APQRSVDSVARQNLASAIEQHGSGRKSLSEFALVDPNPISGNVSLGKQFQN 376 (617)
Q Consensus 326 ~~~~~~~s~~r~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 376 (617)
++...+. +- .+.+++.+||-+++|..|+|+++++...++.
T Consensus 320 Spt~~~G----------~~-~~~~LiD~SDLHvLDF~PsLKTLa~~~Vl~~ 359 (392)
T KOG4693|consen 320 SPTNYNG----------MI-SPSGLIDLSDLHVLDFAPSLKTLAMQSVLMF 359 (392)
T ss_pred CccccCC----------CC-CcccccccccceeeecChhHHHHHHHHHHHH
Confidence 1111111 11 4577899999999999999999999988853
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.5e-39 Score=362.86 Aligned_cols=266 Identities=24% Similarity=0.358 Sum_probs=240.5
Q ss_pred CEEEecCCC-CCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEE
Q 007111 1 MIVVGGESG-NGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFD 79 (617)
Q Consensus 1 i~V~GG~~~-~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd 79 (617)
||++||... ....+.+++||+.++.|..+++ ++. +|..+++++++|.||++||.+.+....+++|+||
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~----------m~~-~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD 355 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAP----------MPS-PRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYD 355 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCC----------CCc-ccccccEEEECCEEEEEccccCCCcccceEEEec
Confidence 689999986 6688999999999999999998 343 4447999999999999999965556778999999
Q ss_pred CCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECC
Q 007111 80 TETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDD 159 (617)
Q Consensus 80 ~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~ 159 (617)
+.+++|..++ +|+.+|.++++++++|.||++||.++.. .++++++|||.+++|+.+ ++|+.+|++|+++++++
T Consensus 356 ~~~~~W~~~a---~M~~~R~~~~v~~l~g~iYavGG~dg~~-~l~svE~YDp~~~~W~~v---a~m~~~r~~~gv~~~~g 428 (571)
T KOG4441|consen 356 PRTNQWTPVA---PMNTKRSDFGVAVLDGKLYAVGGFDGEK-SLNSVECYDPVTNKWTPV---APMLTRRSGHGVAVLGG 428 (571)
T ss_pred CCCCceeccC---CccCccccceeEEECCEEEEEecccccc-ccccEEEecCCCCccccc---CCCCcceeeeEEEEECC
Confidence 9999999998 8999999999999999999999999764 799999999999999988 58999999999999999
Q ss_pred cEEEEEccCCCCC-CCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEE
Q 007111 160 KNLLIFGGSSKSK-TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWS 238 (617)
Q Consensus 160 ~~LyV~GG~~~~~-~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~ 238 (617)
+ ||++||.++.. +++++++|||.+++|+.+++| +.+|.+++++.++++||++||+++......+++||+.+++|+
T Consensus 429 ~-iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M---~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 429 K-LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPM---NTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWT 504 (571)
T ss_pred E-EEEEcCcCCCccccceEEEEcCCCCceeecCCc---ccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCcee
Confidence 9 99999998877 999999999999999999887 899999999999999999999998666778999999999999
Q ss_pred EeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCC-CCeEEEEECCCCccccccc
Q 007111 239 VAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSMGRR 296 (617)
Q Consensus 239 ~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~-~~dV~vyd~~~~~W~~~w~ 296 (617)
.+. .++.+|..++++++. +.+|++||+++.. ++.|++||+.+++|+..-.
T Consensus 505 ~v~----~m~~~rs~~g~~~~~----~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 505 MVA----PMTSPRSAVGVVVLG----GKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred Ecc----cCccccccccEEEEC----CEEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence 985 455688888888887 8999999998765 8999999999999966433
No 3
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=4.5e-37 Score=340.35 Aligned_cols=298 Identities=22% Similarity=0.332 Sum_probs=237.1
Q ss_pred CEEEecCCCCCccceEEEE--ECCC----CcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCC-Cce
Q 007111 1 MIVVGGESGNGLLDDVQVL--NFDR----FSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGS-DRV 73 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~y--d~~t----~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~-~~~ 73 (617)
|+.|+|..+. .++.+-.| ++.+ ++|..+.++. ..+.+|.+|+++.+++.||||||...... ..+
T Consensus 123 ivgf~G~~~~-~~~~ig~y~~~~~~~~~~~~W~~~~~~~--------~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~ 193 (470)
T PLN02193 123 IVGFHGRSTD-VLHSLGAYISLPSTPKLLGKWIKVEQKG--------EGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDK 193 (470)
T ss_pred EEEEeccCCC-cEEeeEEEEecCCChhhhceEEEcccCC--------CCCCCccccEEEEECCEEEEECCcCCCCCCeeC
Confidence 4567776544 46665555 6544 7999987631 12346789999999999999999854333 335
Q ss_pred EEEEEECCCCcEEEeeccCCCCC-CcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCccc
Q 007111 74 SVWTFDTETECWSVVEAKGDIPV-ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 152 (617)
Q Consensus 74 ~v~~yd~~t~~W~~~~~~g~~P~-~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 152 (617)
++|+||+.+++|..++..+++|. +|.+|+++.++++||||||.+... .++++|+||+.+++|+++.+.+..|.+|+.|
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 272 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNEWKLLTPVEEGPTPRSFH 272 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCEEEEcCcCCCCCCCccce
Confidence 79999999999999887666665 467899999999999999987653 6899999999999999996544558999999
Q ss_pred EEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEEC
Q 007111 153 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDI 232 (617)
Q Consensus 153 ~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl 232 (617)
++++++++ ||||||++....++++++||+.+++|+.+...+.+|.+|.+|+++.++++||++||.++. ..+++++||+
T Consensus 273 ~~~~~~~~-iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-~~~dv~~yD~ 350 (470)
T PLN02193 273 SMAADEEN-VYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-EVDDVHYYDP 350 (470)
T ss_pred EEEEECCE-EEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC-ccCceEEEEC
Confidence 99999988 999999988778899999999999999998766678899999999999999999997643 4688999999
Q ss_pred CCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCC----------CCCCeEEEEECCCCccccc--------
Q 007111 233 LKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK----------EPSNQVEVLSIEKNESSMG-------- 294 (617)
Q Consensus 233 ~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~----------~~~~dV~vyd~~~~~W~~~-------- 294 (617)
.+++|+.+... ...|.+|..|+++++. ++||||||... ...+++|+||+.+++|+..
T Consensus 351 ~t~~W~~~~~~-g~~P~~R~~~~~~~~~----~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~ 425 (470)
T PLN02193 351 VQDKWTQVETF-GVRPSERSVFASAAVG----KHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEE 425 (470)
T ss_pred CCCEEEEeccC-CCCCCCcceeEEEEEC----CEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCC
Confidence 99999998643 2457789999998886 78999999753 1257999999999999642
Q ss_pred ------ccccc--Ccc-CCceeeeccCCCC
Q 007111 295 ------RRSTP--NAK-GPGQLLFEKRSSS 315 (617)
Q Consensus 295 ------w~~~~--~~~-~~~v~vfGG~~~~ 315 (617)
|+.+. ... ...+++|||..++
T Consensus 426 ~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~ 455 (470)
T PLN02193 426 TPSSRGWTASTTGTIDGKKGLVMHGGKAPT 455 (470)
T ss_pred CCCCCccccceeeEEcCCceEEEEcCCCCc
Confidence 22111 111 2348999999763
No 4
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=7.7e-37 Score=338.51 Aligned_cols=277 Identities=19% Similarity=0.315 Sum_probs=226.6
Q ss_pred CEEEecCCC-CC-ccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEE
Q 007111 1 MIVVGGESG-NG-LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTF 78 (617)
Q Consensus 1 i~V~GG~~~-~~-~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~y 78 (617)
|||+||... .. ..+++++||+.+++|..++.+.. .|.++|.+|++++++++||||||... ...++++|+|
T Consensus 178 iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~-------~P~~~~~~~~~v~~~~~lYvfGG~~~-~~~~ndv~~y 249 (470)
T PLN02193 178 IYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGD-------VPHLSCLGVRMVSIGSTLYVFGGRDA-SRQYNGFYSF 249 (470)
T ss_pred EEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCC-------CCCCcccceEEEEECCEEEEECCCCC-CCCCccEEEE
Confidence 689999753 22 34689999999999998765311 22334678999999999999999854 3457899999
Q ss_pred ECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEEC
Q 007111 79 DTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD 158 (617)
Q Consensus 79 d~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~ 158 (617)
|+.+++|+.+++.+..|.+|+.|+++..+++|||+||.+... .++++++||+.+++|+.++..+.+|.+|.+|++++++
T Consensus 250 D~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~ 328 (470)
T PLN02193 250 DTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA-RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQ 328 (470)
T ss_pred ECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC-CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEEC
Confidence 999999999985444589999999999999999999997754 5789999999999999997666788999999999999
Q ss_pred CcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCC---------CccceEEE
Q 007111 159 DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK---------KRHAETLI 229 (617)
Q Consensus 159 ~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~---------~~~~~v~~ 229 (617)
++ |||+||.++. ..+++++||+.+++|+.+..++..|.+|..|+++.++++|||+||.... ...+++|+
T Consensus 329 gk-iyviGG~~g~-~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~ 406 (470)
T PLN02193 329 GK-VWVVYGFNGC-EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFA 406 (470)
T ss_pred Cc-EEEEECCCCC-ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEE
Confidence 98 9999998654 4789999999999999998887889999999999999999999997531 23578999
Q ss_pred EECCCCcEEEeecCCC--CCCCCCcceEEEEEeecCCcEEEEEcCCCC--CCCCeEEEEECCC
Q 007111 230 FDILKGEWSVAITSPS--SSVTSNKGFTLVLVQHKEKDFLVAFGGIKK--EPSNQVEVLSIEK 288 (617)
Q Consensus 230 yDl~~~~W~~l~~~~~--~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~--~~~~dV~vyd~~~ 288 (617)
||+.+++|+.+...+. ..|.+|..++++.....++..|++|||+.. +.++|+|+|++++
T Consensus 407 ~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~~~ 469 (470)
T PLN02193 407 LDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGIDS 469 (470)
T ss_pred EEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEEecCC
Confidence 9999999999875442 346677666554433334466999999964 4489999998765
No 5
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=8.8e-37 Score=324.94 Aligned_cols=277 Identities=19% Similarity=0.331 Sum_probs=218.8
Q ss_pred CEEEecCCCC--CccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEE
Q 007111 1 MIVVGGESGN--GLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTF 78 (617)
Q Consensus 1 i~V~GG~~~~--~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~y 78 (617)
|||+||.... ...+++++||+.+++|..++++.. .+.+.+.+|++++++++||||||... ....+++++|
T Consensus 35 iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~-------~p~~~~~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~y 106 (341)
T PLN02153 35 LYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGD-------VPRISCLGVRMVAVGTKLYIFGGRDE-KREFSDFYSY 106 (341)
T ss_pred EEEECCccCCCCceeCcEEEEECCCCEEEEcCccCC-------CCCCccCceEEEEECCEEEEECCCCC-CCccCcEEEE
Confidence 6999998532 345799999999999998876311 12223457999999999999999854 3456789999
Q ss_pred ECCCCcEEEeecc--CCCCCCcceeEEEEECCEEEEEeecCCCC-----CccCeEEEEECCCCcEEEeecCCCCCCCCcc
Q 007111 79 DTETECWSVVEAK--GDIPVARSGHTVVRASSVLILFGGEDGKR-----RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 151 (617)
Q Consensus 79 d~~t~~W~~~~~~--g~~P~~R~~~s~~~~~~~IYv~GG~~~~~-----~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~ 151 (617)
|+.+++|..++.. ...|.+|.+|++++.+++|||+||.+..+ ..++++++||+.+++|+.++..+..|.+|.+
T Consensus 107 d~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~ 186 (341)
T PLN02153 107 DTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGG 186 (341)
T ss_pred ECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCc
Confidence 9999999998731 11388999999999999999999986432 1357899999999999999755556789999
Q ss_pred cEEEEECCcEEEEEccCCCC--------CCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCC---
Q 007111 152 HVAALYDDKNLLIFGGSSKS--------KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR--- 220 (617)
Q Consensus 152 h~a~~~~~~~LyV~GG~~~~--------~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~--- 220 (617)
|++++++++ |||+||.+.. ...+++++||+.+++|+.+...+..|.+|..|+++.++++||||||...
T Consensus 187 ~~~~~~~~~-iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~ 265 (341)
T PLN02153 187 AGFAVVQGK-IWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDL 265 (341)
T ss_pred ceEEEECCe-EEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCcc
Confidence 999999998 9999987421 2367899999999999999887778999999999999999999999742
Q ss_pred ------CCccceEEEEECCCCcEEEeecCCC-CCCCCCcceEEEEEeecCCcEEEEEcCCCC--CCCCeEEEEECCC
Q 007111 221 ------KKRHAETLIFDILKGEWSVAITSPS-SSVTSNKGFTLVLVQHKEKDFLVAFGGIKK--EPSNQVEVLSIEK 288 (617)
Q Consensus 221 ------~~~~~~v~~yDl~~~~W~~l~~~~~-~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~--~~~~dV~vyd~~~ 288 (617)
....+++|+||+.+++|+.+..... ..|..+..++++.+. +++.|||+||+.. +.++++|+|+...
T Consensus 266 ~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~--~~~~~~~~gG~~~~~~~~~~~~~~~~~~ 340 (341)
T PLN02153 266 KGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVY--GKNGLLMHGGKLPTNERTDDLYFYAVNS 340 (341)
T ss_pred ccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccC--CcceEEEEcCcCCCCccccceEEEeccc
Confidence 2235689999999999999864322 334455556666554 3468999999964 3589999998753
No 6
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=8.6e-37 Score=344.11 Aligned_cols=250 Identities=12% Similarity=0.166 Sum_probs=216.1
Q ss_pred cceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 13 LDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 13 ~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
...+++||+.+++|..+++ +|. +|.+|+++++++.|||+||........+++++||+.+++|..++
T Consensus 271 ~~~v~~yd~~~~~W~~l~~----------mp~-~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~--- 336 (557)
T PHA02713 271 NPCILVYNINTMEYSVIST----------IPN-HIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELP--- 336 (557)
T ss_pred CCCEEEEeCCCCeEEECCC----------CCc-cccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCC---
Confidence 3578999999999999987 444 34578999999999999998544445688999999999999998
Q ss_pred CCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCC-
Q 007111 93 DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS- 171 (617)
Q Consensus 93 ~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~- 171 (617)
+||.+|.++++++++++||++||.++.. .++++++|||.+++|+.++ +||.+|.++++++++++ ||++||.++.
T Consensus 337 ~m~~~R~~~~~~~~~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g~-IYviGG~~~~~ 411 (557)
T PHA02713 337 PMIKNRCRFSLAVIDDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQY-IYIIGGRTEHI 411 (557)
T ss_pred CCcchhhceeEEEECCEEEEECCcCCCC-CCceEEEEECCCCeEEECC---CCCcccccccEEEECCE-EEEEeCCCccc
Confidence 8999999999999999999999987653 5789999999999999984 89999999999999998 9999998642
Q ss_pred -----------------CCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCcc-ceEEEEECC
Q 007111 172 -----------------KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRH-AETLIFDIL 233 (617)
Q Consensus 172 -----------------~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~-~~v~~yDl~ 233 (617)
...+.+++|||.+++|+.++++ |.+|..+++++++++||++||.++.... +.+++||+.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m---~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~ 488 (557)
T PHA02713 412 DYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF---WTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTN 488 (557)
T ss_pred ccccccccccccccccccccceEEEECCCCCeEeecCCC---CcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCC
Confidence 1367899999999999999876 8899999999999999999998644333 457999999
Q ss_pred C-CcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCccccc
Q 007111 234 K-GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMG 294 (617)
Q Consensus 234 ~-~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W~~~ 294 (617)
+ ++|+.++ ..|.+|..+++++++ ++||++||+++. ..+++||+.+++|+..
T Consensus 489 ~~~~W~~~~----~m~~~r~~~~~~~~~----~~iyv~Gg~~~~--~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 489 TYNGWELIT----TTESRLSALHTILHD----NTIMMLHCYESY--MLQDTFNVYTYEWNHI 540 (557)
T ss_pred CCCCeeEcc----ccCcccccceeEEEC----CEEEEEeeecce--eehhhcCcccccccch
Confidence 9 8999986 456789999999997 899999999863 4799999999999654
No 7
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=4.6e-36 Score=319.44 Aligned_cols=281 Identities=22% Similarity=0.334 Sum_probs=220.2
Q ss_pred CCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCC-CCceEEEEEECCCCcEEEeeccCCCCCC-c
Q 007111 21 FDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG-SDRVSVWTFDTETECWSVVEAKGDIPVA-R 98 (617)
Q Consensus 21 ~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~-~~~~~v~~yd~~t~~W~~~~~~g~~P~~-R 98 (617)
+....|..+..... ..+.+|.+|++++++++||||||..... ...+++|+||+.+++|..+++.+..|.. +
T Consensus 4 ~~~~~W~~~~~~~~-------~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~ 76 (341)
T PLN02153 4 TLQGGWIKVEQKGG-------KGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISC 76 (341)
T ss_pred ccCCeEEEecCCCC-------CCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCcc
Confidence 35677998876311 1234677899999999999999985432 2346899999999999998854444443 4
Q ss_pred ceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecC--CCCCCCCcccEEEEECCcEEEEEccCCCC-----
Q 007111 99 SGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT--GTGPSPRSNHVAALYDDKNLLIFGGSSKS----- 171 (617)
Q Consensus 99 ~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~--g~~P~~R~~h~a~~~~~~~LyV~GG~~~~----- 171 (617)
.+|++++++++||+|||.+... .++++++||+.+++|+.++.. ...|.+|..|++++++++ ||||||.+..
T Consensus 77 ~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~-iyv~GG~~~~~~~~~ 154 (341)
T PLN02153 77 LGVRMVAVGTKLYIFGGRDEKR-EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENH-VYVFGGVSKGGLMKT 154 (341)
T ss_pred CceEEEEECCEEEEECCCCCCC-ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCE-EEEECCccCCCccCC
Confidence 5789999999999999987654 578999999999999988521 123889999999999988 9999998642
Q ss_pred -CCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCC--------CccceEEEEECCCCcEEEeec
Q 007111 172 -KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK--------KRHAETLIFDILKGEWSVAIT 242 (617)
Q Consensus 172 -~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~--------~~~~~v~~yDl~~~~W~~l~~ 242 (617)
..++++++||+.+++|+.+..++.+|.+|.+|+++.++++|||+||.... ...+++++||+.+++|+.+..
T Consensus 155 ~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~ 234 (341)
T PLN02153 155 PERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVET 234 (341)
T ss_pred CcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccc
Confidence 24678999999999999998877677899999999999999999986421 225789999999999999863
Q ss_pred CCCCCCCCCcceEEEEEeecCCcEEEEEcCCCC----------CCCCeEEEEECCCCccccc-----------cc--ccc
Q 007111 243 SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK----------EPSNQVEVLSIEKNESSMG-----------RR--STP 299 (617)
Q Consensus 243 ~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~----------~~~~dV~vyd~~~~~W~~~-----------w~--~~~ 299 (617)
. ...|.+|..|+++++. ++||||||... ...+++|+||+.+++|+.. |. .++
T Consensus 235 ~-g~~P~~r~~~~~~~~~----~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~ 309 (341)
T PLN02153 235 T-GAKPSARSVFAHAVVG----KYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTA 309 (341)
T ss_pred c-CCCCCCcceeeeEEEC----CEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCcccccccc
Confidence 2 2357789999999887 89999999731 2257999999999999642 32 122
Q ss_pred Ccc-CCceeeeccCCCC
Q 007111 300 NAK-GPGQLLFEKRSSS 315 (617)
Q Consensus 300 ~~~-~~~v~vfGG~~~~ 315 (617)
... .+.+++|||..+.
T Consensus 310 ~v~~~~~~~~~gG~~~~ 326 (341)
T PLN02153 310 TVYGKNGLLMHGGKLPT 326 (341)
T ss_pred ccCCcceEEEEcCcCCC
Confidence 223 3479999999774
No 8
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=1e-34 Score=284.13 Aligned_cols=268 Identities=26% Similarity=0.455 Sum_probs=230.6
Q ss_pred CEEEecCCCCC-----ccceEEEEECCCCcEEEcccccc--CCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCce
Q 007111 1 MIVVGGESGNG-----LLDDVQVLNFDRFSWTAASSKLY--LSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRV 73 (617)
Q Consensus 1 i~V~GG~~~~~-----~~~~v~~yd~~t~~W~~l~~~~~--~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~ 73 (617)
||-|||.-.+. ..-||.++|..+.+|+++++... ..++.-|.-+--|++|+.|.+.+++||+||.++.....+
T Consensus 26 iYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN 105 (392)
T KOG4693|consen 26 IYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACN 105 (392)
T ss_pred EEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccc
Confidence 57889863221 23479999999999999987311 122222334446899999999999999999988777889
Q ss_pred EEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCC-CCccCeEEEEECCCCcEEEeecCCCCCCCCccc
Q 007111 74 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK-RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 152 (617)
Q Consensus 74 ~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~-~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 152 (617)
.++.||++++.|.+...+|-+|.+|-+|++|++++..|||||+... .+++++++.+|..+-+|+.+.++|..|.=|..|
T Consensus 106 ~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH 185 (392)
T KOG4693|consen 106 LLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFH 185 (392)
T ss_pred eeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhh
Confidence 9999999999999999999999999999999999999999998653 358999999999999999999999999999999
Q ss_pred EEEEECCcEEEEEccCCC---------CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCC--
Q 007111 153 VAALYDDKNLLIFGGSSK---------SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK-- 221 (617)
Q Consensus 153 ~a~~~~~~~LyV~GG~~~---------~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~-- 221 (617)
+++++++. +|||||+++ ..+++.|..+|+.|+.|......+..|.+|..|++...++++|+|||.++.
T Consensus 186 ~a~~~~~~-MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln 264 (392)
T KOG4693|consen 186 TASVIDGM-MYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLN 264 (392)
T ss_pred hhhhccce-EEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhh
Confidence 99999977 999999864 246889999999999999998888889999999999999999999999865
Q ss_pred CccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCC
Q 007111 222 KRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 274 (617)
Q Consensus 222 ~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~ 274 (617)
.-++++|.||+.+..|..+.. ....|.+|..+++++.+ +++|+|||..
T Consensus 265 ~HfndLy~FdP~t~~W~~I~~-~Gk~P~aRRRqC~~v~g----~kv~LFGGTs 312 (392)
T KOG4693|consen 265 VHFNDLYCFDPKTSMWSVISV-RGKYPSARRRQCSVVSG----GKVYLFGGTS 312 (392)
T ss_pred hhhcceeecccccchheeeec-cCCCCCcccceeEEEEC----CEEEEecCCC
Confidence 457899999999999999875 44568888889998887 8899999975
No 9
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1e-33 Score=318.82 Aligned_cols=253 Identities=18% Similarity=0.232 Sum_probs=213.8
Q ss_pred ccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeecc
Q 007111 12 LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 91 (617)
Q Consensus 12 ~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 91 (617)
....+..|+..+.+|..+.. .|.+..|+++++++.||++||........+++++||+.+++|..++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-- 327 (534)
T PHA03098 262 FTYNYITNYSPLSEINTIID------------IHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVP-- 327 (534)
T ss_pred hhceeeecchhhhhcccccC------------ccccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECC--
Confidence 34567788988999988764 2234457899999999999999655555678999999999999988
Q ss_pred CCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCC-
Q 007111 92 GDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK- 170 (617)
Q Consensus 92 g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~- 170 (617)
++|.+|.+|+++.++++||++||.+.. ...+++++||+.+++|+.++ ++|.+|++|+++.++++ |||+||...
T Consensus 328 -~~~~~R~~~~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~~-iYv~GG~~~~ 401 (534)
T PHA03098 328 -ELIYPRKNPGVTVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEP---PLIFPRYNPCVVNVNNL-IYVIGGISKN 401 (534)
T ss_pred -CCCcccccceEEEECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCC---CcCcCCccceEEEECCE-EEEECCcCCC
Confidence 789999999999999999999998754 36889999999999999884 89999999999999998 999999753
Q ss_pred CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCC---ccceEEEEECCCCcEEEeecCCCCC
Q 007111 171 SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK---RHAETLIFDILKGEWSVAITSPSSS 247 (617)
Q Consensus 171 ~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~---~~~~v~~yDl~~~~W~~l~~~~~~~ 247 (617)
...++++++||+.+++|+.+.++ |.+|.+|+++.++++|||+||.+... .++.+++||+.+++|+.++. .
T Consensus 402 ~~~~~~v~~yd~~t~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~----~ 474 (534)
T PHA03098 402 DELLKTVECFSLNTNKWSKGSPL---PISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS----L 474 (534)
T ss_pred CcccceEEEEeCCCCeeeecCCC---CccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC----C
Confidence 44678999999999999998765 88999999999999999999976443 25679999999999999863 3
Q ss_pred CCCCcceEEEEEeecCCcEEEEEcCCCCCC-CCeEEEEECCCCcccccc
Q 007111 248 VTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSMGR 295 (617)
Q Consensus 248 p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~-~~dV~vyd~~~~~W~~~w 295 (617)
+.+|.++++++++ +.|||+||.+... .++|++||+++++|....
T Consensus 475 ~~~r~~~~~~~~~----~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 475 NFPRINASLCIFN----NKIYVVGGDKYEYYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred CcccccceEEEEC----CEEEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence 4567888887775 8899999987554 789999999999996553
No 10
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.7e-33 Score=315.20 Aligned_cols=219 Identities=26% Similarity=0.394 Sum_probs=203.7
Q ss_pred CEEEecCC-CCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEE
Q 007111 1 MIVVGGES-GNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFD 79 (617)
Q Consensus 1 i~V~GG~~-~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd 79 (617)
|||+||.+ +...++++++||+.+++|..+++| . .+|.+|++++++|.||++||.+ +....+++++||
T Consensus 335 lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M----------~-~~R~~~~v~~l~g~iYavGG~d-g~~~l~svE~YD 402 (571)
T KOG4441|consen 335 LYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPM----------N-TKRSDFGVAVLDGKLYAVGGFD-GEKSLNSVECYD 402 (571)
T ss_pred EEEEccccCCCcccceEEEecCCCCceeccCCc----------c-CccccceeEEECCEEEEEeccc-cccccccEEEec
Confidence 69999999 778899999999999999999874 3 4666899999999999999996 556788999999
Q ss_pred CCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECC
Q 007111 80 TETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDD 159 (617)
Q Consensus 80 ~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~ 159 (617)
|.+++|..++ +|+.+|++|++++++++||++||.++....++++++|||.+++|+.++ +|+.+|.+++++++++
T Consensus 403 p~~~~W~~va---~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~---~M~~~R~~~g~a~~~~ 476 (571)
T KOG4441|consen 403 PVTNKWTPVA---PMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA---PMNTRRSGFGVAVLNG 476 (571)
T ss_pred CCCCcccccC---CCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecC---CcccccccceEEEECC
Confidence 9999999998 899999999999999999999999887668999999999999999995 9999999999999999
Q ss_pred cEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEE
Q 007111 160 KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 239 (617)
Q Consensus 160 ~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~ 239 (617)
. ||++||+++...+..+++|||.+++|+.+.++ +.+|..+.++.+++++|++||+.+...++.+..||+.+++|+.
T Consensus 477 ~-iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m---~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~ 552 (571)
T KOG4441|consen 477 K-IYVVGGFDGTSALSSVERYDPETNQWTMVAPM---TSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTE 552 (571)
T ss_pred E-EEEECCccCCCccceEEEEcCCCCceeEcccC---ccccccccEEEECCEEEEEecccCccccceeEEcCCCCCceee
Confidence 9 99999999877788899999999999999776 8899999999999999999999999999999999999999999
Q ss_pred ee
Q 007111 240 AI 241 (617)
Q Consensus 240 l~ 241 (617)
..
T Consensus 553 ~~ 554 (571)
T KOG4441|consen 553 VT 554 (571)
T ss_pred CC
Confidence 86
No 11
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=2e-32 Score=303.31 Aligned_cols=281 Identities=31% Similarity=0.498 Sum_probs=244.4
Q ss_pred CEEEecCCCCCccce--EEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEE
Q 007111 1 MIVVGGESGNGLLDD--VQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTF 78 (617)
Q Consensus 1 i~V~GG~~~~~~~~~--v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~y 78 (617)
||||||........+ ++++|..+..|....... ..+++|++|+++.++++||+|||.+......++++.|
T Consensus 73 ~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g--------~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~ 144 (482)
T KOG0379|consen 73 LYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATG--------DEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSL 144 (482)
T ss_pred EEEECCCCCCCccccceeEEeecCCcccccccccC--------CCCCcccceeEEEECCeEEEEccccCCCCChhheEec
Confidence 689999887665555 999999999998887642 2336889999999999999999997656667899999
Q ss_pred ECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEEC
Q 007111 79 DTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD 158 (617)
Q Consensus 79 d~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~ 158 (617)
|+.+++|..+...+..|++|.+|+++++++++|||||.+..+..++++|+||+.+.+|.++.+.|..|.||++|++++++
T Consensus 145 d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~ 224 (482)
T KOG0379|consen 145 DLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVG 224 (482)
T ss_pred cCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEEC
Confidence 99999999999999999999999999999999999999988768999999999999999999999999999999999999
Q ss_pred CcEEEEEccCC-CCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCC-C-ccceEEEEECCCC
Q 007111 159 DKNLLIFGGSS-KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK-K-RHAETLIFDILKG 235 (617)
Q Consensus 159 ~~~LyV~GG~~-~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~-~-~~~~v~~yDl~~~ 235 (617)
++ ++||||.+ +..+++++|.+|+.+..|..+...+..|.+|++|+++..+++++|+||.... . .+.++|.||..+.
T Consensus 225 ~~-~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~ 303 (482)
T KOG0379|consen 225 NK-LLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETL 303 (482)
T ss_pred Ce-EEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCccccccccccccccccccc
Confidence 99 77777776 7889999999999999999999999999999999999889999999998875 2 5889999999999
Q ss_pred cEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCC--CCCCCeEEEEECCCCc
Q 007111 236 EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK--KEPSNQVEVLSIEKNE 290 (617)
Q Consensus 236 ~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~--~~~~~dV~vyd~~~~~ 290 (617)
.|..+.......|.++..++...+...+...+.++||.. ....++++...+....
T Consensus 304 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (482)
T KOG0379|consen 304 VWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADVFSLQIKLLS 360 (482)
T ss_pred ceeeeeccccccccccccccceeeccCCccceeeecCccccccchhhcccccccccc
Confidence 999998655356788899998888887778888888854 3335666655554433
No 12
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=9e-32 Score=286.83 Aligned_cols=258 Identities=16% Similarity=0.196 Sum_probs=197.1
Q ss_pred CEEEecCCCCCccceEEEEEC--CCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCC-----CCce
Q 007111 1 MIVVGGESGNGLLDDVQVLNF--DRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG-----SDRV 73 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~--~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~-----~~~~ 73 (617)
|||+||... +++++||+ .+++|..+++ ++.++|..|++++++++|||+||..... ..++
T Consensus 20 vyv~GG~~~----~~~~~~d~~~~~~~W~~l~~----------~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~ 85 (346)
T TIGR03547 20 VYVGLGSAG----TSWYKLDLKKPSKGWQKIAD----------FPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFD 85 (346)
T ss_pred EEEEccccC----CeeEEEECCCCCCCceECCC----------CCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecc
Confidence 689999642 67999996 5788999987 4445677899999999999999985322 1357
Q ss_pred EEEEEECCCCcEEEeeccCCCCCCcceeEEE-EECCEEEEEeecCCCC--------------------------------
Q 007111 74 SVWTFDTETECWSVVEAKGDIPVARSGHTVV-RASSVLILFGGEDGKR-------------------------------- 120 (617)
Q Consensus 74 ~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~-~~~~~IYv~GG~~~~~-------------------------------- 120 (617)
++|+||+.+++|+.++. .+|.+|.+++++ .++++||++||.+...
T Consensus 86 ~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (346)
T TIGR03547 86 DVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPED 163 (346)
T ss_pred cEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhH
Confidence 89999999999999973 467788888777 6899999999986320
Q ss_pred -CccCeEEEEECCCCcEEEeecCCCCCC-CCcccEEEEECCcEEEEEccCCCCC-CCCeEEEEE--CCCCcEEEeecCCC
Q 007111 121 -RKLNDLHMFDLKSLTWLPLHCTGTGPS-PRSNHVAALYDDKNLLIFGGSSKSK-TLNDLYSLD--FETMIWTRIKIRGF 195 (617)
Q Consensus 121 -~~~~~v~~yD~~t~~W~~l~~~g~~P~-~R~~h~a~~~~~~~LyV~GG~~~~~-~~n~v~~yD--~~t~~W~~~~~~g~ 195 (617)
..++++++||+.+++|+.+. +||. +|+++++++++++ |||+||..... ...+++.|| +.+++|+.+..++.
T Consensus 164 ~~~~~~v~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~ 239 (346)
T TIGR03547 164 YFWNKNVLSYDPSTNQWRNLG---ENPFLGTAGSAIVHKGNK-LLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPP 239 (346)
T ss_pred cCccceEEEEECCCCceeECc---cCCCCcCCCceEEEECCE-EEEEeeeeCCCccchheEEEEecCCCceeeecCCCCC
Confidence 12478999999999999984 7885 6899999999988 99999986432 234566665 46779999988732
Q ss_pred C----CCCCcceEEEEECCEEEEEecCCCCC-----------------ccceEEEEECCCCcEEEeecCCCCCCCCCcce
Q 007111 196 H----PSPRAGCCGVLCGTKWYIAGGGSRKK-----------------RHAETLIFDILKGEWSVAITSPSSSVTSNKGF 254 (617)
Q Consensus 196 ~----P~~R~~ha~v~~~~~IyI~GG~s~~~-----------------~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~ 254 (617)
+ +.++.+|+++.++++|||+||.+... ....+.+||+.+++|+.+.. .|.+|..+
T Consensus 240 ~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~----lp~~~~~~ 315 (346)
T TIGR03547 240 PKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGK----LPQGLAYG 315 (346)
T ss_pred CCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCC----CCCCceee
Confidence 1 12234666778899999999975211 12357899999999999863 45567777
Q ss_pred EEEEEeecCCcEEEEEcCCCCC--CCCeEEEEEC
Q 007111 255 TLVLVQHKEKDFLVAFGGIKKE--PSNQVEVLSI 286 (617)
Q Consensus 255 s~v~v~~~~~~~L~I~GG~~~~--~~~dV~vyd~ 286 (617)
++++++ +.|||+||.+.. ..++|+.+..
T Consensus 316 ~~~~~~----~~iyv~GG~~~~~~~~~~v~~~~~ 345 (346)
T TIGR03547 316 VSVSWN----NGVLLIGGENSGGKAVTDVYLLSW 345 (346)
T ss_pred EEEEcC----CEEEEEeccCCCCCEeeeEEEEEe
Confidence 776666 899999998743 3788887653
No 13
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1.9e-31 Score=281.93 Aligned_cols=246 Identities=19% Similarity=0.339 Sum_probs=192.8
Q ss_pred CEEEecCCCCC----------ccceEEEEEC-C-CCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCC
Q 007111 1 MIVVGGESGNG----------LLDDVQVLNF-D-RFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDS 68 (617)
Q Consensus 1 i~V~GG~~~~~----------~~~~v~~yd~-~-t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~ 68 (617)
|||+||.+... .++++++|+. . +.+|..+++ +|.|++ .++++++++.||++||...
T Consensus 16 l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~----------lp~~r~-~~~~~~~~~~lyviGG~~~- 83 (323)
T TIGR03548 16 ILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQ----------LPYEAA-YGASVSVENGIYYIGGSNS- 83 (323)
T ss_pred EEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEccc----------CCcccc-ceEEEEECCEEEEEcCCCC-
Confidence 68999986542 4468888863 3 237999886 444444 5677888999999999854
Q ss_pred CCCceEEEEEECCCCcE----EEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCC
Q 007111 69 GSDRVSVWTFDTETECW----SVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGT 144 (617)
Q Consensus 69 ~~~~~~v~~yd~~t~~W----~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~ 144 (617)
....+++|+||+.+++| ..++ ++|.+|..|++++++++||++||.... ...+++++||+.+++|+.++ +
T Consensus 84 ~~~~~~v~~~d~~~~~w~~~~~~~~---~lp~~~~~~~~~~~~~~iYv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~ 156 (323)
T TIGR03548 84 SERFSSVYRITLDESKEELICETIG---NLPFTFENGSACYKDGTLYVGGGNRNG-KPSNKSYLFNLETQEWFELP---D 156 (323)
T ss_pred CCCceeEEEEEEcCCceeeeeeEcC---CCCcCccCceEEEECCEEEEEeCcCCC-ccCceEEEEcCCCCCeeECC---C
Confidence 44578999999999998 4554 799999999999999999999998543 35899999999999999984 6
Q ss_pred CC-CCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCC--CCCCCcceEEEE-ECCEEEEEecCCC
Q 007111 145 GP-SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGF--HPSPRAGCCGVL-CGTKWYIAGGGSR 220 (617)
Q Consensus 145 ~P-~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~--~P~~R~~ha~v~-~~~~IyI~GG~s~ 220 (617)
+| .+|..|++++++++ |||+||.+... ..++++||+.+++|+.+..+.. .|.++..++++. .+++|||+||.+.
T Consensus 157 ~p~~~r~~~~~~~~~~~-iYv~GG~~~~~-~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~ 234 (323)
T TIGR03548 157 FPGEPRVQPVCVKLQNE-LYVFGGGSNIA-YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNK 234 (323)
T ss_pred CCCCCCCcceEEEECCE-EEEEcCCCCcc-ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCH
Confidence 76 47999999899988 99999986543 4678999999999999987632 233444454444 4799999999864
Q ss_pred CC--------------------------------ccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEE
Q 007111 221 KK--------------------------------RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLV 268 (617)
Q Consensus 221 ~~--------------------------------~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~ 268 (617)
.. ..+++++||+.+++|+.++..+ ..+|.+++++++. +.||
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p---~~~r~~~~~~~~~----~~iy 307 (323)
T TIGR03548 235 DVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSP---FFARCGAALLLTG----NNIF 307 (323)
T ss_pred HHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccc---ccccCchheEEEC----CEEE
Confidence 21 1367999999999999986322 2478899988887 8899
Q ss_pred EEcCCC
Q 007111 269 AFGGIK 274 (617)
Q Consensus 269 I~GG~~ 274 (617)
++||..
T Consensus 308 v~GG~~ 313 (323)
T TIGR03548 308 SINGEL 313 (323)
T ss_pred EEeccc
Confidence 999974
No 14
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=2e-31 Score=281.69 Aligned_cols=258 Identities=17% Similarity=0.238 Sum_probs=200.1
Q ss_pred cccceEEEEECCEEEEEcccCCCC---------CCceEEEEEECCC--CcEEEeeccCCCCCCcceeEEEEECCEEEEEe
Q 007111 46 ACRGHSLISWGKKVLLVGGKTDSG---------SDRVSVWTFDTET--ECWSVVEAKGDIPVARSGHTVVRASSVLILFG 114 (617)
Q Consensus 46 ~r~~hs~v~~g~~lyV~GG~~~~~---------~~~~~v~~yd~~t--~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~G 114 (617)
.+.++.++++++.|||+||.+.+. ..++++|+|+... .+|..++ ++|.+|..++++++++.||++|
T Consensus 3 ~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~---~lp~~r~~~~~~~~~~~lyviG 79 (323)
T TIGR03548 3 GVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDG---QLPYEAAYGASVSVENGIYYIG 79 (323)
T ss_pred ceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcc---cCCccccceEEEEECCEEEEEc
Confidence 456788899999999999986543 2346899886333 2698887 7999999888899999999999
Q ss_pred ecCCCCCccCeEEEEECCCCcEE-EeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecC
Q 007111 115 GEDGKRRKLNDLHMFDLKSLTWL-PLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR 193 (617)
Q Consensus 115 G~~~~~~~~~~v~~yD~~t~~W~-~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~ 193 (617)
|.+... .++++++||+.+++|. .....+++|.+|..|++++++++ |||+||.......+++++||+.+++|+.+.++
T Consensus 80 G~~~~~-~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~-iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 157 (323)
T TIGR03548 80 GSNSSE-RFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGT-LYVGGGNRNGKPSNKSYLFNLETQEWFELPDF 157 (323)
T ss_pred CCCCCC-CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCE-EEEEeCcCCCccCceEEEEcCCCCCeeECCCC
Confidence 987653 5789999999999982 11222589999999999999998 99999986666789999999999999998765
Q ss_pred CCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCC-CCCCCCcceEEEEEeecCCcEEEEEcC
Q 007111 194 GFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPS-SSVTSNKGFTLVLVQHKEKDFLVAFGG 272 (617)
Q Consensus 194 g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~-~~p~~r~~~s~v~v~~~~~~~L~I~GG 272 (617)
+ ..+|..|+++.++++|||+||..... ..++++||+.+++|+.++.++. ..|..+.+++++++. +++|||+||
T Consensus 158 p--~~~r~~~~~~~~~~~iYv~GG~~~~~-~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~---~~~iyv~GG 231 (323)
T TIGR03548 158 P--GEPRVQPVCVKLQNELYVFGGGSNIA-YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKIN---ESLLLCIGG 231 (323)
T ss_pred C--CCCCCcceEEEECCEEEEEcCCCCcc-ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEEC---CCEEEEECC
Confidence 1 24788898889999999999986432 4568999999999999875432 234444455544443 378999999
Q ss_pred CCCCC---------------------------------CCeEEEEECCCCccccc--------cccccCccCCceeeecc
Q 007111 273 IKKEP---------------------------------SNQVEVLSIEKNESSMG--------RRSTPNAKGPGQLLFEK 311 (617)
Q Consensus 273 ~~~~~---------------------------------~~dV~vyd~~~~~W~~~--------w~~~~~~~~~~v~vfGG 311 (617)
.++.. .+.|++||+.+++|+.. ..+.....++.++++||
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG 311 (323)
T TIGR03548 232 FNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSING 311 (323)
T ss_pred cCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEec
Confidence 86421 36799999999999542 22234457889999999
Q ss_pred CCC
Q 007111 312 RSS 314 (617)
Q Consensus 312 ~~~ 314 (617)
...
T Consensus 312 ~~~ 314 (323)
T TIGR03548 312 ELK 314 (323)
T ss_pred ccc
Confidence 743
No 15
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=9.4e-32 Score=297.98 Aligned_cols=246 Identities=33% Similarity=0.544 Sum_probs=221.2
Q ss_pred CCCCcccceEEEEECCEEEEEcccCCCCCCce-EEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCC
Q 007111 42 LKIPACRGHSLISWGKKVLLVGGKTDSGSDRV-SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKR 120 (617)
Q Consensus 42 ~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~-~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~ 120 (617)
..+.+|++|+++.+++++|||||........+ ++|+||..+..|....+++..|.+|++|+++.++++||+|||.+...
T Consensus 56 ~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~ 135 (482)
T KOG0379|consen 56 VGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKY 135 (482)
T ss_pred CCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCC
Confidence 45567889999999999999999855444333 59999999999999999999999999999999999999999998655
Q ss_pred CccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCC-CCCeEEEEECCCCcEEEeecCCCCCCC
Q 007111 121 RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK-TLNDLYSLDFETMIWTRIKIRGFHPSP 199 (617)
Q Consensus 121 ~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~-~~n~v~~yD~~t~~W~~~~~~g~~P~~ 199 (617)
..+++++.||+.+++|..+.+.+.+|.+|.+|++++++++ +|||||.+... ..|++|+||+.+.+|.++...+..|.|
T Consensus 136 ~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~-l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~p 214 (482)
T KOG0379|consen 136 RNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTK-LVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSP 214 (482)
T ss_pred CChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCE-EEEECCccCcccceeeeeeeccccccceecccCCCCCCC
Confidence 5689999999999999999988999999999999999977 99999998765 899999999999999999999999999
Q ss_pred CcceEEEEECCEEEEEecCC-CCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCC--
Q 007111 200 RAGCCGVLCGTKWYIAGGGS-RKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE-- 276 (617)
Q Consensus 200 R~~ha~v~~~~~IyI~GG~s-~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~-- 276 (617)
|.+|+++.+++++|||||.. ++..++++|.+|+.+..|..+. .....|.+|++|+++... .+++++||....
T Consensus 215 R~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~-~~g~~p~~R~~h~~~~~~----~~~~l~gG~~~~~~ 289 (482)
T KOG0379|consen 215 RYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLP-TGGDLPSPRSGHSLTVSG----DHLLLFGGGTDPKQ 289 (482)
T ss_pred CCCceEEEECCeEEEEeccccCCceecceEeeecccceeeecc-ccCCCCCCcceeeeEEEC----CEEEEEcCCccccc
Confidence 99999999999999999988 6678899999999999999544 456779999999999665 889999998763
Q ss_pred -CCCeEEEEECCCCcccc
Q 007111 277 -PSNQVEVLSIEKNESSM 293 (617)
Q Consensus 277 -~~~dV~vyd~~~~~W~~ 293 (617)
.+.++|.|++++..|..
T Consensus 290 ~~l~~~~~l~~~~~~w~~ 307 (482)
T KOG0379|consen 290 EPLGDLYGLDLETLVWSK 307 (482)
T ss_pred ccccccccccccccceee
Confidence 68999999999988854
No 16
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=3.2e-31 Score=298.53 Aligned_cols=220 Identities=19% Similarity=0.310 Sum_probs=191.8
Q ss_pred CEEEecCCCCC-ccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEE
Q 007111 1 MIVVGGESGNG-LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFD 79 (617)
Q Consensus 1 i~V~GG~~~~~-~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd 79 (617)
|||+||..... ..+++++||+.+++|..+++ ++ .+|.+|++++++++||++||.. .....+++++||
T Consensus 297 lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~----------~~-~~R~~~~~~~~~~~lyv~GG~~-~~~~~~~v~~yd 364 (534)
T PHA03098 297 IYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPE----------LI-YPRKNPGVTVFNNRIYVIGGIY-NSISLNTVESWK 364 (534)
T ss_pred EEEECCCcCCCCeeccEEEEeCCCCeeeECCC----------CC-cccccceEEEECCEEEEEeCCC-CCEecceEEEEc
Confidence 68999987544 56799999999999998876 33 3566899999999999999985 344567899999
Q ss_pred CCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECC
Q 007111 80 TETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDD 159 (617)
Q Consensus 80 ~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~ 159 (617)
+.+++|+..+ ++|.+|++|+++.++++||++||....+..++++++||+.+++|+.+. ++|.+|++|+++.+++
T Consensus 365 ~~~~~W~~~~---~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~ 438 (534)
T PHA03098 365 PGESKWREEP---PLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS---PLPISHYGGCAIYHDG 438 (534)
T ss_pred CCCCceeeCC---CcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC---CCCccccCceEEEECC
Confidence 9999999988 789999999999999999999998665556899999999999999884 7999999999999999
Q ss_pred cEEEEEccCCCCC---CCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCc
Q 007111 160 KNLLIFGGSSKSK---TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 160 ~~LyV~GG~~~~~---~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
+ |||+||.+... ..+.+++||+.+++|+.+..+ |.+|.+++++.++++|||+||.......+++++||+.+++
T Consensus 439 ~-iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 439 K-IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSL---NFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred E-EEEECCccCCCCCcccceEEEecCCCCceeeCCCC---CcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 8 99999986432 367799999999999998765 7789999999999999999998876667889999999999
Q ss_pred EEEeec
Q 007111 237 WSVAIT 242 (617)
Q Consensus 237 W~~l~~ 242 (617)
|..++.
T Consensus 515 W~~~~~ 520 (534)
T PHA03098 515 WTLFCK 520 (534)
T ss_pred EEecCC
Confidence 999864
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.98 E-value=1.1e-30 Score=281.67 Aligned_cols=260 Identities=17% Similarity=0.262 Sum_probs=199.1
Q ss_pred CEEEecCCCCCccceEEEEECC--CCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCC-C----CCCce
Q 007111 1 MIVVGGESGNGLLDDVQVLNFD--RFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTD-S----GSDRV 73 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~--t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~-~----~~~~~ 73 (617)
|||+||..+ +.+++||+. ++.|..+++ ++.++|.+|++++++++|||+||... . ....+
T Consensus 41 iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~----------~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~ 106 (376)
T PRK14131 41 VYVGLGSAG----TSWYKLDLNAPSKGWTKIAA----------FPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFD 106 (376)
T ss_pred EEEEeCCCC----CeEEEEECCCCCCCeEECCc----------CCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcc
Confidence 689999643 458999986 478998886 44456788999999999999999854 1 12357
Q ss_pred EEEEEECCCCcEEEeeccCCCCCCcceeEEEE-ECCEEEEEeecCCCC--------------------------------
Q 007111 74 SVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKR-------------------------------- 120 (617)
Q Consensus 74 ~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~-------------------------------- 120 (617)
++|+||+.+++|..++. ..|.++.+|++++ .+++||++||.+...
T Consensus 107 ~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (376)
T PRK14131 107 DVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPED 184 (376)
T ss_pred cEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhh
Confidence 89999999999999973 3477788888777 799999999975310
Q ss_pred -CccCeEEEEECCCCcEEEeecCCCCCC-CCcccEEEEECCcEEEEEccCCCC-CCCCeEE--EEECCCCcEEEeecCCC
Q 007111 121 -RKLNDLHMFDLKSLTWLPLHCTGTGPS-PRSNHVAALYDDKNLLIFGGSSKS-KTLNDLY--SLDFETMIWTRIKIRGF 195 (617)
Q Consensus 121 -~~~~~v~~yD~~t~~W~~l~~~g~~P~-~R~~h~a~~~~~~~LyV~GG~~~~-~~~n~v~--~yD~~t~~W~~~~~~g~ 195 (617)
...+++++||+.+++|+.+ +++|. +|.+|+++.++++ |||+||.... ....+++ .||+++++|+.+..+
T Consensus 185 ~~~~~~v~~YD~~t~~W~~~---~~~p~~~~~~~a~v~~~~~-iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-- 258 (376)
T PRK14131 185 YFFNKEVLSYDPSTNQWKNA---GESPFLGTAGSAVVIKGNK-LWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDL-- 258 (376)
T ss_pred cCcCceEEEEECCCCeeeEC---CcCCCCCCCcceEEEECCE-EEEEeeeECCCcCChhheEEEecCCCcceeecCCC--
Confidence 1257899999999999988 47885 7888998888988 9999997432 2334444 457789999999876
Q ss_pred CCCCCc--------ceEEEEECCEEEEEecCCCCC-----------------ccceEEEEECCCCcEEEeecCCCCCCCC
Q 007111 196 HPSPRA--------GCCGVLCGTKWYIAGGGSRKK-----------------RHAETLIFDILKGEWSVAITSPSSSVTS 250 (617)
Q Consensus 196 ~P~~R~--------~ha~v~~~~~IyI~GG~s~~~-----------------~~~~v~~yDl~~~~W~~l~~~~~~~p~~ 250 (617)
|.+|. ++.++.++++|||+||.+... ....+.+||+.+++|+.+. ..|.+
T Consensus 259 -p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~----~lp~~ 333 (376)
T PRK14131 259 -PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG----ELPQG 333 (376)
T ss_pred -CCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC----cCCCC
Confidence 44432 233566799999999975321 0124578999999999875 44667
Q ss_pred CcceEEEEEeecCCcEEEEEcCCCC--CCCCeEEEEECCCCcc
Q 007111 251 NKGFTLVLVQHKEKDFLVAFGGIKK--EPSNQVEVLSIEKNES 291 (617)
Q Consensus 251 r~~~s~v~v~~~~~~~L~I~GG~~~--~~~~dV~vyd~~~~~W 291 (617)
|..++++++. +.|||+||... ...++|++|.++.+.+
T Consensus 334 r~~~~av~~~----~~iyv~GG~~~~~~~~~~v~~~~~~~~~~ 372 (376)
T PRK14131 334 LAYGVSVSWN----NGVLLIGGETAGGKAVSDVTLLSWDGKKL 372 (376)
T ss_pred ccceEEEEeC----CEEEEEcCCCCCCcEeeeEEEEEEcCCEE
Confidence 8888877776 88999999853 3488999999987765
No 18
>PHA02713 hypothetical protein; Provisional
Probab=99.98 E-value=4.2e-31 Score=297.96 Aligned_cols=224 Identities=15% Similarity=0.172 Sum_probs=193.0
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCccc
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 152 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 152 (617)
..+++||+.+++|..++ ++|.+|.+++++++++.||++||.+......+++++||+.+++|..++ +||.+|+++
T Consensus 272 ~~v~~yd~~~~~W~~l~---~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~---~m~~~R~~~ 345 (557)
T PHA02713 272 PCILVYNINTMEYSVIS---TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELP---PMIKNRCRF 345 (557)
T ss_pred CCEEEEeCCCCeEEECC---CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCC---CCcchhhce
Confidence 46899999999999998 799999999999999999999998644446799999999999999884 899999999
Q ss_pred EEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCC----------
Q 007111 153 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK---------- 222 (617)
Q Consensus 153 ~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~---------- 222 (617)
++++++++ ||++||.++....+++++|||.+++|+.++++ |.+|..++++.++++||++||.+...
T Consensus 346 ~~~~~~g~-IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~m---p~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~ 421 (557)
T PHA02713 346 SLAVIDDT-IYAIGGQNGTNVERTIECYTMGDDKWKMLPDM---PIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNS 421 (557)
T ss_pred eEEEECCE-EEEECCcCCCCCCceEEEEECCCCeEEECCCC---CcccccccEEEECCEEEEEeCCCccccccccccccc
Confidence 99999999 99999998777788999999999999998776 89999999999999999999976421
Q ss_pred --------ccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCC--CCeEEEEECCC-Ccc
Q 007111 223 --------RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP--SNQVEVLSIEK-NES 291 (617)
Q Consensus 223 --------~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~--~~dV~vyd~~~-~~W 291 (617)
..+.+++||+.+++|+.++ +++.+|..++++++. +.||++||.++.. .+.|++||+++ ++|
T Consensus 422 ~~~~~~~~~~~~ve~YDP~td~W~~v~----~m~~~r~~~~~~~~~----~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W 493 (557)
T PHA02713 422 IDMEEDTHSSNKVIRYDTVNNIWETLP----NFWTGTIRPGVVSHK----DDIYVVCDIKDEKNVKTCIFRYNTNTYNGW 493 (557)
T ss_pred ccccccccccceEEEECCCCCeEeecC----CCCcccccCcEEEEC----CEEEEEeCCCCCCccceeEEEecCCCCCCe
Confidence 2577999999999999986 455678888988887 8999999986432 35689999999 899
Q ss_pred cc-------ccccccCccCCceeeeccCCC
Q 007111 292 SM-------GRRSTPNAKGPGQLLFEKRSS 314 (617)
Q Consensus 292 ~~-------~w~~~~~~~~~~v~vfGG~~~ 314 (617)
+. +........+++++++||..+
T Consensus 494 ~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~ 523 (557)
T PHA02713 494 ELITTTESRLSALHTILHDNTIMMLHCYES 523 (557)
T ss_pred eEccccCcccccceeEEECCEEEEEeeecc
Confidence 54 334444557999999999855
No 19
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.98 E-value=2e-30 Score=276.47 Aligned_cols=254 Identities=21% Similarity=0.270 Sum_probs=193.1
Q ss_pred CCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEEC--CCCcEEEeeccCCCC-CCcceeEEEEECCEEEEEeecCC
Q 007111 42 LKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDT--ETECWSVVEAKGDIP-VARSGHTVVRASSVLILFGGEDG 118 (617)
Q Consensus 42 ~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~--~t~~W~~~~~~g~~P-~~R~~~s~~~~~~~IYv~GG~~~ 118 (617)
+|. ++..+++++++++|||+||.. .+++|+||+ .+++|..++ ++| .+|..+++++++++||++||...
T Consensus 4 lp~-~~~~~~~~~~~~~vyv~GG~~-----~~~~~~~d~~~~~~~W~~l~---~~p~~~R~~~~~~~~~~~iYv~GG~~~ 74 (346)
T TIGR03547 4 LPV-GFKNGTGAIIGDKVYVGLGSA-----GTSWYKLDLKKPSKGWQKIA---DFPGGPRNQAVAAAIDGKLYVFGGIGK 74 (346)
T ss_pred CCc-cccCceEEEECCEEEEEcccc-----CCeeEEEECCCCCCCceECC---CCCCCCcccceEEEECCEEEEEeCCCC
Confidence 444 445577888999999999973 257999996 578899998 788 58999999999999999999864
Q ss_pred CC-----CccCeEEEEECCCCcEEEeecCCCCCCCCcccEEE-EECCcEEEEEccCCCCC--------------------
Q 007111 119 KR-----RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA-LYDDKNLLIFGGSSKSK-------------------- 172 (617)
Q Consensus 119 ~~-----~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~-~~~~~~LyV~GG~~~~~-------------------- 172 (617)
.. ..++++|+||+.+++|+++. .++|.+|.+|+++ +++++ ||++||++...
T Consensus 75 ~~~~~~~~~~~~v~~Yd~~~~~W~~~~--~~~p~~~~~~~~~~~~~g~-IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (346)
T TIGR03547 75 ANSEGSPQVFDDVYRYDPKKNSWQKLD--TRSPVGLLGASGFSLHNGQ-AYFTGGVNKNIFDGYFADLSAADKDSEPKDK 151 (346)
T ss_pred CCCCCcceecccEEEEECCCCEEecCC--CCCCCcccceeEEEEeCCE-EEEEcCcChHHHHHHHhhHhhcCccchhhhh
Confidence 32 25789999999999999985 2567788888877 67777 99999986321
Q ss_pred --------------CCCeEEEEECCCCcEEEeecCCCCCC-CCcceEEEEECCEEEEEecCCCCC-ccceEEEEEC--CC
Q 007111 173 --------------TLNDLYSLDFETMIWTRIKIRGFHPS-PRAGCCGVLCGTKWYIAGGGSRKK-RHAETLIFDI--LK 234 (617)
Q Consensus 173 --------------~~n~v~~yD~~t~~W~~~~~~g~~P~-~R~~ha~v~~~~~IyI~GG~s~~~-~~~~v~~yDl--~~ 234 (617)
..+++++||+.+++|+.+.++ |. +|.+++++.++++|||+||..... ...+++.|++ .+
T Consensus 152 ~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~---p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~ 228 (346)
T TIGR03547 152 LIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGEN---PFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGK 228 (346)
T ss_pred hHHHHhCCChhHcCccceEEEEECCCCceeECccC---CCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCC
Confidence 247899999999999999776 54 688899999999999999976432 2345666654 66
Q ss_pred CcEEEeecCCCCC---CCCCcceEEEEEeecCCcEEEEEcCCCCC------------------CCCeEEEEECCCCcccc
Q 007111 235 GEWSVAITSPSSS---VTSNKGFTLVLVQHKEKDFLVAFGGIKKE------------------PSNQVEVLSIEKNESSM 293 (617)
Q Consensus 235 ~~W~~l~~~~~~~---p~~r~~~s~v~v~~~~~~~L~I~GG~~~~------------------~~~dV~vyd~~~~~W~~ 293 (617)
+.|+.++.++... +..+.+|+++++. ++|||+||.+.. ....+++||+++++|+.
T Consensus 229 ~~W~~~~~m~~~r~~~~~~~~~~~a~~~~----~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~ 304 (346)
T TIGR03547 229 LEWNKLPPLPPPKSSSQEGLAGAFAGISN----GVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSK 304 (346)
T ss_pred ceeeecCCCCCCCCCccccccEEeeeEEC----CEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccc
Confidence 7999987543221 1233456566665 889999997521 12468999999999954
Q ss_pred c-------cccccCccCCceeeeccCCC
Q 007111 294 G-------RRSTPNAKGPGQLLFEKRSS 314 (617)
Q Consensus 294 ~-------w~~~~~~~~~~v~vfGG~~~ 314 (617)
. ...+....++.++++||...
T Consensus 305 ~~~lp~~~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 305 VGKLPQGLAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred cCCCCCCceeeEEEEcCCEEEEEeccCC
Confidence 2 22333347999999999854
No 20
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=2.6e-30 Score=287.19 Aligned_cols=208 Identities=16% Similarity=0.270 Sum_probs=182.0
Q ss_pred EEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEEC
Q 007111 52 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL 131 (617)
Q Consensus 52 ~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~ 131 (617)
.+..++.||++||... ....+++++||+.+++|..++ +||.+|..+++++++++||++||.+.. +++++||+
T Consensus 267 ~~~~~~~lyviGG~~~-~~~~~~v~~Ydp~~~~W~~~~---~m~~~r~~~~~v~~~~~iYviGG~~~~----~sve~ydp 338 (480)
T PHA02790 267 STHVGEVVYLIGGWMN-NEIHNNAIAVNYISNNWIPIP---PMNSPRLYASGVPANNKLYVVGGLPNP----TSVERWFH 338 (480)
T ss_pred eEEECCEEEEEcCCCC-CCcCCeEEEEECCCCEEEECC---CCCchhhcceEEEECCEEEEECCcCCC----CceEEEEC
Confidence 3458999999999843 345678999999999999998 799999999999999999999998542 56999999
Q ss_pred CCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCE
Q 007111 132 KSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTK 211 (617)
Q Consensus 132 ~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~ 211 (617)
.+++|..++ +||.+|.+|++++++++ ||++||.++. .+.+++|||.+++|+.++++ |.+|.+|+++.++++
T Consensus 339 ~~n~W~~~~---~l~~~r~~~~~~~~~g~-IYviGG~~~~--~~~ve~ydp~~~~W~~~~~m---~~~r~~~~~~~~~~~ 409 (480)
T PHA02790 339 GDAAWVNMP---SLLKPRCNPAVASINNV-IYVIGGHSET--DTTTEYLLPNHDQWQFGPST---YYPHYKSCALVFGRR 409 (480)
T ss_pred CCCeEEECC---CCCCCCcccEEEEECCE-EEEecCcCCC--CccEEEEeCCCCEEEeCCCC---CCccccceEEEECCE
Confidence 999999884 89999999999999999 9999998643 36799999999999998776 889999999999999
Q ss_pred EEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCC-CCeEEEEECCCCc
Q 007111 212 WYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNE 290 (617)
Q Consensus 212 IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~-~~dV~vyd~~~~~ 290 (617)
||++||. +.+||+.+++|+.++ .++.+|.+++++++. ++||++||.++.. .+.|++||+.+++
T Consensus 410 IYv~GG~--------~e~ydp~~~~W~~~~----~m~~~r~~~~~~v~~----~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 410 LFLVGRN--------AEFYCESSNTWTLID----DPIYPRDNPELIIVD----NKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred EEEECCc--------eEEecCCCCcEeEcC----CCCCCccccEEEEEC----CEEEEECCcCCCcccceEEEEECCCCe
Confidence 9999984 568999999999986 345688899999887 8999999987443 6789999999999
Q ss_pred cc
Q 007111 291 SS 292 (617)
Q Consensus 291 W~ 292 (617)
|+
T Consensus 474 W~ 475 (480)
T PHA02790 474 WN 475 (480)
T ss_pred EE
Confidence 94
No 21
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=2.9e-30 Score=286.82 Aligned_cols=204 Identities=16% Similarity=0.232 Sum_probs=180.6
Q ss_pred CEEEecCCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEEC
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDT 80 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~ 80 (617)
|||+||.++....+++++||+.+++|..+++ ++. +|..+++++++++||++||... ..++++||+
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~----------m~~-~r~~~~~v~~~~~iYviGG~~~----~~sve~ydp 338 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPP----------MNS-PRLYASGVPANNKLYVVGGLPN----PTSVERWFH 338 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCEEEECCC----------CCc-hhhcceEEEECCEEEEECCcCC----CCceEEEEC
Confidence 6899998777778899999999999999997 333 5556888999999999999742 256999999
Q ss_pred CCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCc
Q 007111 81 ETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDK 160 (617)
Q Consensus 81 ~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~ 160 (617)
.+++|..++ +||.+|.++++++++++||++||.+.. .+.+++|||.+++|+.++ +||.+|++|++++++++
T Consensus 339 ~~n~W~~~~---~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~---~m~~~r~~~~~~~~~~~ 409 (480)
T PHA02790 339 GDAAWVNMP---SLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGP---STYYPHYKSCALVFGRR 409 (480)
T ss_pred CCCeEEECC---CCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCC---CCCCccccceEEEECCE
Confidence 999999998 899999999999999999999998643 367999999999999984 89999999999999999
Q ss_pred EEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEe
Q 007111 161 NLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 240 (617)
Q Consensus 161 ~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l 240 (617)
||++||. +.+||+.+++|+.++++ |.+|.++++++++++||++||.+.....+.+++||+.+++|+..
T Consensus 410 -IYv~GG~--------~e~ydp~~~~W~~~~~m---~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 410 -LFLVGRN--------AEFYCESSNTWTLIDDP---IYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred -EEEECCc--------eEEecCCCCcEeEcCCC---CCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 9999984 67899999999999776 78999999999999999999987655567899999999999874
No 22
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.97 E-value=1.8e-30 Score=267.39 Aligned_cols=230 Identities=31% Similarity=0.561 Sum_probs=198.0
Q ss_pred CEEEecCCCCC----ccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEEC-CEEEEEcccCCCC-----C
Q 007111 1 MIVVGGESGNG----LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWG-KKVLLVGGKTDSG-----S 70 (617)
Q Consensus 1 i~V~GG~~~~~----~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g-~~lyV~GG~~~~~-----~ 70 (617)
+|+|||..-++ .+++++.||..+++|..+.. | .++|+|.+|.+|++- |.+|||||..... .
T Consensus 81 LilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~s-----p----n~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~ 151 (521)
T KOG1230|consen 81 LILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVS-----P----NAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFH 151 (521)
T ss_pred eEEecceeecceeEEEeeeeeEEeccccceeEecc-----C----CCcCCCccceeEEeccCeEEEeccccCCcchhhhh
Confidence 68999985433 67999999999999999976 2 456778889888885 8999999985322 2
Q ss_pred CceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCC---CccCeEEEEECCCCcEEEeecCCCCCC
Q 007111 71 DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKR---RKLNDLHMFDLKSLTWLPLHCTGTGPS 147 (617)
Q Consensus 71 ~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~---~~~~~v~~yD~~t~~W~~l~~~g~~P~ 147 (617)
.+.++|+||+.+++|.++...| -|.+|++|-+++...+|+||||+-... .|+|++|+||+.+.+|+++.+.|..|.
T Consensus 152 HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~Pt 230 (521)
T KOG1230|consen 152 HYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPT 230 (521)
T ss_pred hhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCC
Confidence 4678999999999999998876 599999999999999999999975432 389999999999999999999888999
Q ss_pred CCcccEEEEE-CCcEEEEEccCCC---------CCCCCeEEEEECCC-----CcEEEeecCCCCCCCCcceEEEEE-CCE
Q 007111 148 PRSNHVAALY-DDKNLLIFGGSSK---------SKTLNDLYSLDFET-----MIWTRIKIRGFHPSPRAGCCGVLC-GTK 211 (617)
Q Consensus 148 ~R~~h~a~~~-~~~~LyV~GG~~~---------~~~~n~v~~yD~~t-----~~W~~~~~~g~~P~~R~~ha~v~~-~~~ 211 (617)
||+||.+.+. .+. |||+|||+. +...++.|.+++.+ ..|+.+.+.|-.|.||+++++++. +++
T Consensus 231 pRSGcq~~vtpqg~-i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~k 309 (521)
T KOG1230|consen 231 PRSGCQFSVTPQGG-IVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHK 309 (521)
T ss_pred CCCcceEEecCCCc-EEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCc
Confidence 9999999999 667 999999963 45788999999988 789999999999999999999887 669
Q ss_pred EEEEecCCCC---------CccceEEEEECCCCcEEEee
Q 007111 212 WYIAGGGSRK---------KRHAETLIFDILKGEWSVAI 241 (617)
Q Consensus 212 IyI~GG~s~~---------~~~~~v~~yDl~~~~W~~l~ 241 (617)
-|.|||..+- ..++++|.||++.++|....
T Consensus 310 al~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~q 348 (521)
T KOG1230|consen 310 ALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQ 348 (521)
T ss_pred eEEecceecccccchhhhhhhhhhhhheecccchhhHhh
Confidence 9999997651 24689999999999998764
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.97 E-value=3.7e-29 Score=269.97 Aligned_cols=254 Identities=20% Similarity=0.254 Sum_probs=188.6
Q ss_pred CCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECC--CCcEEEeeccCCCC-CCcceeEEEEECCEEEEEeecCC
Q 007111 42 LKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTE--TECWSVVEAKGDIP-VARSGHTVVRASSVLILFGGEDG 118 (617)
Q Consensus 42 ~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~--t~~W~~~~~~g~~P-~~R~~~s~~~~~~~IYv~GG~~~ 118 (617)
+|.|+. .+++++++++|||+||... +.+|+||+. ++.|..++ ++| .+|.+++++.++++|||+||...
T Consensus 25 lP~~~~-~~~~~~~~~~iyv~gG~~~-----~~~~~~d~~~~~~~W~~l~---~~p~~~r~~~~~v~~~~~IYV~GG~~~ 95 (376)
T PRK14131 25 LPVPFK-NGTGAIDNNTVYVGLGSAG-----TSWYKLDLNAPSKGWTKIA---AFPGGPREQAVAAFIDGKLYVFGGIGK 95 (376)
T ss_pred CCcCcc-CCeEEEECCEEEEEeCCCC-----CeEEEEECCCCCCCeEECC---cCCCCCcccceEEEECCEEEEEcCCCC
Confidence 555555 4578889999999999732 358999986 47899988 676 58999999999999999999865
Q ss_pred -C----CCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEE-ECCcEEEEEccCCCC---------------------
Q 007111 119 -K----RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL-YDDKNLLIFGGSSKS--------------------- 171 (617)
Q Consensus 119 -~----~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~-~~~~~LyV~GG~~~~--------------------- 171 (617)
. ...++++|+||+.+++|+.+.. .+|.++.+|++++ .+++ ||++||....
T Consensus 96 ~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~-IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~ 172 (376)
T PRK14131 96 TNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGK-AYITGGVNKNIFDGYFEDLAAAGKDKTPKDK 172 (376)
T ss_pred CCCCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCE-EEEECCCCHHHHHHHHhhhhhcccchhhhhh
Confidence 1 1357899999999999999852 3577788888877 6666 9999998531
Q ss_pred -------------CCCCeEEEEECCCCcEEEeecCCCCC-CCCcceEEEEECCEEEEEecCCCC-CccceEE--EEECCC
Q 007111 172 -------------KTLNDLYSLDFETMIWTRIKIRGFHP-SPRAGCCGVLCGTKWYIAGGGSRK-KRHAETL--IFDILK 234 (617)
Q Consensus 172 -------------~~~n~v~~yD~~t~~W~~~~~~g~~P-~~R~~ha~v~~~~~IyI~GG~s~~-~~~~~v~--~yDl~~ 234 (617)
...+++++||+.+++|+.+.++ | .+|.+|+++.++++|||+||.... ....++| .||+++
T Consensus 173 i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~---p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~ 249 (376)
T PRK14131 173 INDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGES---PFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNN 249 (376)
T ss_pred hHHHHhcCChhhcCcCceEEEEECCCCeeeECCcC---CCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCC
Confidence 1247899999999999998765 5 478888999899999999996433 2344555 456788
Q ss_pred CcEEEeecCCCCC----CCCCcceEEEEEeecCCcEEEEEcCCCCCC------------------CCeEEEEECCCCccc
Q 007111 235 GEWSVAITSPSSS----VTSNKGFTLVLVQHKEKDFLVAFGGIKKEP------------------SNQVEVLSIEKNESS 292 (617)
Q Consensus 235 ~~W~~l~~~~~~~----p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~------------------~~dV~vyd~~~~~W~ 292 (617)
++|..++.++... +..+.++.++++. ++|||+||.+... ...+++||+++++|.
T Consensus 250 ~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~----~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~ 325 (376)
T PRK14131 250 LKWQKLPDLPPAPGGSSQEGVAGAFAGYSN----GVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQ 325 (376)
T ss_pred cceeecCCCCCCCcCCcCCccceEeceeEC----CEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCccc
Confidence 9999987544321 1111223344554 7899999975210 135789999999995
Q ss_pred c-------ccccccCccCCceeeeccCCC
Q 007111 293 M-------GRRSTPNAKGPGQLLFEKRSS 314 (617)
Q Consensus 293 ~-------~w~~~~~~~~~~v~vfGG~~~ 314 (617)
. ++.+.+...+++++++||...
T Consensus 326 ~~~~lp~~r~~~~av~~~~~iyv~GG~~~ 354 (376)
T PRK14131 326 KVGELPQGLAYGVSVSWNNGVLLIGGETA 354 (376)
T ss_pred ccCcCCCCccceEEEEeCCEEEEEcCCCC
Confidence 3 334445557999999999854
No 24
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.96 E-value=1.4e-28 Score=253.46 Aligned_cols=244 Identities=27% Similarity=0.525 Sum_probs=202.6
Q ss_pred CCCcccceEEEEE--CCEEEEEcccCCCCC---CceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEEC-CEEEEEeec
Q 007111 43 KIPACRGHSLISW--GKKVLLVGGKTDSGS---DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGE 116 (617)
Q Consensus 43 ~~p~r~~hs~v~~--g~~lyV~GG~~~~~~---~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~-~~IYv~GG~ 116 (617)
++.+|.++++++. .+.|++|||....+. .++++|+||..+++|+++... +.|++|+.|.++++. +.+|+|||.
T Consensus 63 ~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~sp-n~P~pRsshq~va~~s~~l~~fGGE 141 (521)
T KOG1230|consen 63 PPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSP-NAPPPRSSHQAVAVPSNILWLFGGE 141 (521)
T ss_pred CCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccC-CCcCCCccceeEEeccCeEEEeccc
Confidence 3456777777765 468999999855443 368999999999999998643 568999999998886 899999996
Q ss_pred CC--CCC---ccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCC----CCCCCeEEEEECCCCcE
Q 007111 117 DG--KRR---KLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK----SKTLNDLYSLDFETMIW 187 (617)
Q Consensus 117 ~~--~~~---~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~----~~~~n~v~~yD~~t~~W 187 (617)
-. +.. -..++|+||+.+++|+++...| .|.+|+||.++++... |+||||+-. ..++|++|+||+.+-+|
T Consensus 142 faSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~-lilFGGFhd~nr~y~YyNDvy~FdLdtykW 219 (521)
T KOG1230|consen 142 FASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQ-LILFGGFHDSNRDYIYYNDVYAFDLDTYKW 219 (521)
T ss_pred cCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeee-EEEEcceecCCCceEEeeeeEEEeccceee
Confidence 33 211 3689999999999999997654 7999999999999988 999999843 35899999999999999
Q ss_pred EEeecCCCCCCCCcceEEEEE-CCEEEEEecCCC---------CCccceEEEEECCC-----CcEEEeecCCCCCCCCCc
Q 007111 188 TRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSR---------KKRHAETLIFDILK-----GEWSVAITSPSSSVTSNK 252 (617)
Q Consensus 188 ~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~---------~~~~~~v~~yDl~~-----~~W~~l~~~~~~~p~~r~ 252 (617)
+.+.+.|..|.||++|++++. .+.|||.||++. +..++++|.+++.. ..|..+.. ....|.+|.
T Consensus 220 ~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp-~g~kPspRs 298 (521)
T KOG1230|consen 220 SKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKP-SGVKPSPRS 298 (521)
T ss_pred eeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccC-CCCCCCCCC
Confidence 999998888999999999988 999999999863 24578999999988 78999864 334588999
Q ss_pred ceEEEEEeecCCcEEEEEcCCCC----------CCCCeEEEEECCCCcccc
Q 007111 253 GFTLVLVQHKEKDFLVAFGGIKK----------EPSNQVEVLSIEKNESSM 293 (617)
Q Consensus 253 ~~s~v~v~~~~~~~L~I~GG~~~----------~~~~dV~vyd~~~~~W~~ 293 (617)
++|+++.. ++.-+.|||... ...|+++.||+..+.|..
T Consensus 299 gfsv~va~---n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~ 346 (521)
T KOG1230|consen 299 GFSVAVAK---NHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSE 346 (521)
T ss_pred ceeEEEec---CCceEEecceecccccchhhhhhhhhhhhheecccchhhH
Confidence 99998887 467899999742 237999999999999955
No 25
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=1.8e-28 Score=257.06 Aligned_cols=276 Identities=24% Similarity=0.471 Sum_probs=225.2
Q ss_pred CEEEecCCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEEC
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDT 80 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~ 80 (617)
|+||||-+ .+..+++.+||..++.|...+.-. .-+|++..|.++..|.+||+|||...-+.+.+++|.+--
T Consensus 45 iviFGGGN-EGiiDELHvYNTatnqWf~PavrG--------DiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQa 115 (830)
T KOG4152|consen 45 IVIFGGGN-EGIIDELHVYNTATNQWFAPAVRG--------DIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQA 115 (830)
T ss_pred EEEecCCc-ccchhhhhhhccccceeecchhcC--------CCCCchhhcceEecCceEEEEccEeeeccccchHHHhhh
Confidence 68999954 458899999999999997665422 334566689999999999999999887778888887766
Q ss_pred CCCcEEEeec----cCCCCCCcceeEEEEECCEEEEEeecCCC--------CCccCeEEEEECCCC----cEEEeecCCC
Q 007111 81 ETECWSVVEA----KGDIPVARSGHTVVRASSVLILFGGEDGK--------RRKLNDLHMFDLKSL----TWLPLHCTGT 144 (617)
Q Consensus 81 ~t~~W~~~~~----~g~~P~~R~~~s~~~~~~~IYv~GG~~~~--------~~~~~~v~~yD~~t~----~W~~l~~~g~ 144 (617)
..-.|+++.+ .|..|++|.+|+...++++.|+|||.... ..|++++|++++.-. .|...-..|.
T Consensus 116 sRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv 195 (830)
T KOG4152|consen 116 SRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGV 195 (830)
T ss_pred hhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCC
Confidence 6667776643 46789999999999999999999997432 138999999998854 3998888899
Q ss_pred CCCCCcccEEEEEC-----CcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCC
Q 007111 145 GPSPRSNHVAALYD-----DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGS 219 (617)
Q Consensus 145 ~P~~R~~h~a~~~~-----~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s 219 (617)
+|.+|-.|+++++- ...+|||||.++ ..+.++|.+|++|..|.++...|-.|.||+-|+++.+++++|||||..
T Consensus 196 ~P~pRESHTAViY~eKDs~~skmvvyGGM~G-~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWV 274 (830)
T KOG4152|consen 196 LPPPRESHTAVIYTEKDSKKSKMVVYGGMSG-CRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWV 274 (830)
T ss_pred CCCCcccceeEEEEeccCCcceEEEEccccc-ccccceeEEecceeecccccccCCCCCCcccccceeecceeEEeccee
Confidence 99999999999981 126999999975 468899999999999999999999999999999999999999999953
Q ss_pred CC--------------CccceEEEEECCCCcEEEeecCC---CCCCCCCcceEEEEEeecCCcEEEEEcCCCCCC-----
Q 007111 220 RK--------------KRHAETLIFDILKGEWSVAITSP---SSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP----- 277 (617)
Q Consensus 220 ~~--------------~~~~~v~~yDl~~~~W~~l~~~~---~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~----- 277 (617)
.- ...+.+-++|+++..|..+.... ...|.+|.+|++++++ .++||.-|.+|..
T Consensus 275 Pl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAig----tRlYiWSGRDGYrKAwnn 350 (830)
T KOG4152|consen 275 PLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIG----TRLYIWSGRDGYRKAWNN 350 (830)
T ss_pred eeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEec----cEEEEEeccchhhHhhcc
Confidence 10 13456778999999999875322 1258899999999998 8899999988642
Q ss_pred ---CCeEEEEECCCCc
Q 007111 278 ---SNQVEVLSIEKNE 290 (617)
Q Consensus 278 ---~~dV~vyd~~~~~ 290 (617)
..|+|.+|.++..
T Consensus 351 QVCCkDlWyLdTekPp 366 (830)
T KOG4152|consen 351 QVCCKDLWYLDTEKPP 366 (830)
T ss_pred ccchhhhhhhcccCCC
Confidence 4677888877654
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=3.8e-27 Score=247.16 Aligned_cols=278 Identities=21% Similarity=0.349 Sum_probs=233.0
Q ss_pred CCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeE
Q 007111 23 RFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHT 102 (617)
Q Consensus 23 t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s 102 (617)
--+|..+.....+ .+.+|.+|-+|++..-|+||||.+. ...+.+.+||..++.|..-+.-|++|++...|.
T Consensus 16 ~~rWrrV~~~tGP-------vPrpRHGHRAVaikELiviFGGGNE--GiiDELHvYNTatnqWf~PavrGDiPpgcAA~G 86 (830)
T KOG4152|consen 16 VVRWRRVQQSTGP-------VPRPRHGHRAVAIKELIVIFGGGNE--GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFG 86 (830)
T ss_pred ccceEEEecccCC-------CCCccccchheeeeeeEEEecCCcc--cchhhhhhhccccceeecchhcCCCCCchhhcc
Confidence 3469888764332 2357789999999999999999643 456789999999999999888899999999999
Q ss_pred EEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeec----CCCCCCCCcccEEEEECCcEEEEEccCCC--------
Q 007111 103 VVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHC----TGTGPSPRSNHVAALYDDKNLLIFGGSSK-------- 170 (617)
Q Consensus 103 ~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~----~g~~P~~R~~h~a~~~~~~~LyV~GG~~~-------- 170 (617)
.+..+.+||+|||....++|+|++|-+......|+++.+ .|.+|.||.+|+-.+++++ .|+|||...
T Consensus 87 fvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnK-cYlFGGLaNdseDpknN 165 (830)
T KOG4152|consen 87 FVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNK-CYLFGGLANDSEDPKNN 165 (830)
T ss_pred eEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccE-eEEeccccccccCcccc
Confidence 999999999999999988999999999888889998844 3788999999999999998 999999742
Q ss_pred -CCCCCeEEEEECCC----CcEEEeecCCCCCCCCcceEEEEE---C---CEEEEEecCCCCCccceEEEEECCCCcEEE
Q 007111 171 -SKTLNDLYSLDFET----MIWTRIKIRGFHPSPRAGCCGVLC---G---TKWYIAGGGSRKKRHAETLIFDILKGEWSV 239 (617)
Q Consensus 171 -~~~~n~v~~yD~~t----~~W~~~~~~g~~P~~R~~ha~v~~---~---~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~ 239 (617)
..++|++|.+++.. -.|......|..|.||..|+++.. + .++||+||.++ .++.++|.+|+++..|..
T Consensus 166 vPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G-~RLgDLW~Ldl~Tl~W~k 244 (830)
T KOG4152|consen 166 VPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG-CRLGDLWTLDLDTLTWNK 244 (830)
T ss_pred cchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc-ccccceeEEecceeeccc
Confidence 24799999999864 359999888999999999999886 2 37999999874 578999999999999999
Q ss_pred eecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCC-------------C--CCCeEEEEECCCCcccc-----------
Q 007111 240 AITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK-------------E--PSNQVEVLSIEKNESSM----------- 293 (617)
Q Consensus 240 l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~-------------~--~~~dV~vyd~~~~~W~~----------- 293 (617)
... ....|.+|.-|+++.++ +++|||||+-- + ..+.+-++++.+..|..
T Consensus 245 p~~-~G~~PlPRSLHsa~~IG----nKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~ti 319 (830)
T KOG4152|consen 245 PSL-SGVAPLPRSLHSATTIG----NKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTI 319 (830)
T ss_pred ccc-cCCCCCCcccccceeec----ceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeecccccccc
Confidence 653 45678899999999998 88999999721 1 14778889999999943
Q ss_pred ---ccccccCccCCceeeeccCCCCc
Q 007111 294 ---GRRSTPNAKGPGQLLFEKRSSST 316 (617)
Q Consensus 294 ---~w~~~~~~~~~~v~vfGG~~~~~ 316 (617)
+-.||+.+++.++|++.|+-+|.
T Consensus 320 PR~RAGHCAvAigtRlYiWSGRDGYr 345 (830)
T KOG4152|consen 320 PRARAGHCAVAIGTRLYIWSGRDGYR 345 (830)
T ss_pred ccccccceeEEeccEEEEEeccchhh
Confidence 45678888899999999986643
No 27
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=99.84 E-value=3.9e-20 Score=183.66 Aligned_cols=233 Identities=14% Similarity=0.179 Sum_probs=179.2
Q ss_pred CCCCcceeEEEEEC------CEEEEEeecCCCCCccCeEEEEECCCCc--------EEEeecCCCCCCCCcccEEEEE--
Q 007111 94 IPVARSGHTVVRAS------SVLILFGGEDGKRRKLNDLHMFDLKSLT--------WLPLHCTGTGPSPRSNHVAALY-- 157 (617)
Q Consensus 94 ~P~~R~~~s~~~~~------~~IYv~GG~~~~~~~~~~v~~yD~~t~~--------W~~l~~~g~~P~~R~~h~a~~~-- 157 (617)
+|+.|+.+.+..-+ ..++++||++++++.++++|++...+.. ..+-...|++|.+||+|++.++
T Consensus 19 LPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~S 98 (337)
T PF03089_consen 19 LPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHS 98 (337)
T ss_pred CCCCCCccEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEE
Confidence 78888887766622 2788999999999999999999887654 2333455999999999999887
Q ss_pred -CCcEEEEEccCCCCC--------------CCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCC
Q 007111 158 -DDKNLLIFGGSSKSK--------------TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK 222 (617)
Q Consensus 158 -~~~~LyV~GG~~~~~--------------~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~ 222 (617)
++..+++|||++... +...||.+|++.+.++.... +++..+.++|.+.+.+|.+||+||++-..
T Consensus 99 rGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~l-pEl~dG~SFHvslar~D~VYilGGHsl~s 177 (337)
T PF03089_consen 99 RGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTL-PELQDGQSFHVSLARNDCVYILGGHSLES 177 (337)
T ss_pred CCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccc-hhhcCCeEEEEEEecCceEEEEccEEccC
Confidence 344789999986432 46789999999999987765 56788999999999999999999998665
Q ss_pred ccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCC------------CeEEEEECCCCc
Q 007111 223 RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPS------------NQVEVLSIEKNE 290 (617)
Q Consensus 223 ~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~------------~dV~vyd~~~~~ 290 (617)
.......|.++.+.-...+...+.........+++++...+.+.++|+|||..+.. +.|.+-..+..+
T Consensus 178 d~Rpp~l~rlkVdLllGSP~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sdsQKRm~C~~V~Ldd~~I~ie~~E~P~ 257 (337)
T PF03089_consen 178 DSRPPRLYRLKVDLLLGSPAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSDSQKRMECNTVSLDDDGIHIEEREPPE 257 (337)
T ss_pred CCCCCcEEEEEEeecCCCceeEEEECCCCceEeeeeEeecCCCceEEEecccccceeeeeeeEEEEeCCceEeccCCCCC
Confidence 54444444443332222222333445677788888888888899999999976541 456666678889
Q ss_pred cccccccccCccCCceeeeccCCCCcccccccCCCCCCCCCchhhhhhhHhHH
Q 007111 291 SSMGRRSTPNAKGPGQLLFEKRSSSTGLACQLGNGAPQRSVDSVARQNLASAI 343 (617)
Q Consensus 291 W~~~w~~~~~~~~~~v~vfGG~~~~~~~~~~~~~~~~~~~~~s~~r~~~~~~~ 343 (617)
|+....+..+ ||||+++ +++.+..+|+..|+..+|+.
T Consensus 258 Wt~dI~hSrt-------WFGgs~G---------~G~~Li~iP~e~~~~~~da~ 294 (337)
T PF03089_consen 258 WTGDIKHSRT-------WFGGSMG---------KGSALIGIPSEGRQAPSDAY 294 (337)
T ss_pred CCCCcCcCcc-------ccccccC---------CceEEEEECCCCCCCCCCce
Confidence 9999888888 9999988 88889999999888776664
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.65 E-value=1e-14 Score=149.92 Aligned_cols=249 Identities=19% Similarity=0.325 Sum_probs=174.5
Q ss_pred ceEEEEECCCC--cEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCC----CceEEEEEECCCCcEEE
Q 007111 14 DDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGS----DRVSVWTFDTETECWSV 87 (617)
Q Consensus 14 ~~v~~yd~~t~--~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~----~~~~v~~yd~~t~~W~~ 87 (617)
.+.+..|+... .|++++. .|..+|.+...+.++++||||||...... ..+++|+|||.+++|.+
T Consensus 58 ~afy~ldL~~~~k~W~~~a~----------FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~k 127 (381)
T COG3055 58 TAFYVLDLKKPGKGWTKIAD----------FPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHK 127 (381)
T ss_pred ccceehhhhcCCCCceEccc----------CCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhhe
Confidence 46788888654 6999998 88889998899999999999999843322 35789999999999999
Q ss_pred eeccCCCCCCcceeEEEEECC-EEEEEeecCCC---------------------------------CCccCeEEEEECCC
Q 007111 88 VEAKGDIPVARSGHTVVRASS-VLILFGGEDGK---------------------------------RRKLNDLHMFDLKS 133 (617)
Q Consensus 88 ~~~~g~~P~~R~~~s~~~~~~-~IYv~GG~~~~---------------------------------~~~~~~v~~yD~~t 133 (617)
+.+ ..|....+++++.+++ +||++||.+.. ......+..|+|.+
T Consensus 128 l~t--~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~ 205 (381)
T COG3055 128 LDT--RSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPST 205 (381)
T ss_pred ecc--ccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhccccccccccccc
Confidence 987 4577788899999887 99999997510 11467799999999
Q ss_pred CcEEEeecCCCCC-CCCcccEEEEECCcEEEEEccC-CCCCCCCeEEEEECC--CCcEEEeecCCCCC----CCCcceEE
Q 007111 134 LTWLPLHCTGTGP-SPRSNHVAALYDDKNLLIFGGS-SKSKTLNDLYSLDFE--TMIWTRIKIRGFHP----SPRAGCCG 205 (617)
Q Consensus 134 ~~W~~l~~~g~~P-~~R~~h~a~~~~~~~LyV~GG~-~~~~~~n~v~~yD~~--t~~W~~~~~~g~~P----~~R~~ha~ 205 (617)
++|+.+ |..| .++++++.+.-+++ +.++-|. ........++++++. .-+|..+...+.++ .+..++-.
T Consensus 206 n~W~~~---G~~pf~~~aGsa~~~~~n~-~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~ 281 (381)
T COG3055 206 NQWRNL---GENPFYGNAGSAVVIKGNK-LTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFS 281 (381)
T ss_pred chhhhc---CcCcccCccCcceeecCCe-EEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceecc
Confidence 999987 4444 56777555544555 5555554 455566778888875 56799886653221 22223333
Q ss_pred EEECCEEEEEecCCC-------------------CCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcE
Q 007111 206 VLCGTKWYIAGGGSR-------------------KKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDF 266 (617)
Q Consensus 206 v~~~~~IyI~GG~s~-------------------~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~ 266 (617)
-..++.+.+.||.+- ..+.+++|.+| .+.|..+..+ |.++ ++++.+.. .+.
T Consensus 282 G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeL----p~~l-~YG~s~~~---nn~ 351 (381)
T COG3055 282 GKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGEL----PQGL-AYGVSLSY---NNK 351 (381)
T ss_pred ceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeeccc----CCCc-cceEEEec---CCc
Confidence 334788888888531 12457888888 8999998744 3333 33333333 377
Q ss_pred EEEEcCCCC--CCCCeEEEEECCC
Q 007111 267 LVAFGGIKK--EPSNQVEVLSIEK 288 (617)
Q Consensus 267 L~I~GG~~~--~~~~dV~vyd~~~ 288 (617)
||++||.+. .....|+.+....
T Consensus 352 vl~IGGE~~~Gka~~~v~~l~~~g 375 (381)
T COG3055 352 VLLIGGETSGGKATTRVYSLSWDG 375 (381)
T ss_pred EEEEccccCCCeeeeeEEEEEEcC
Confidence 999999864 3356666655443
No 29
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.57 E-value=2e-15 Score=159.49 Aligned_cols=271 Identities=21% Similarity=0.323 Sum_probs=186.5
Q ss_pred CCCCcEEEccccccCCCCCCCCCCCcccceEEEEECC--EEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCc
Q 007111 21 FDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGK--KVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVAR 98 (617)
Q Consensus 21 ~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~--~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R 98 (617)
+.+.+|..+....--. ......+..|.||.+|...+ .||++|||+ +-..+.++|.|+...+.|..+...+..|..|
T Consensus 236 ey~~~W~~i~~~~~~~-~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWd-G~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~R 313 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKG-DGEDNRPGMRGGHQMVIDVQTECVYLYGGWD-GTQDLADFWAYSVKENQWTCINRDTEGPGAR 313 (723)
T ss_pred cccccccccCchhhcc-cccccCccccCcceEEEeCCCcEEEEecCcc-cchhHHHHHhhcCCcceeEEeecCCCCCcch
Confidence 3466798876532100 01113455788999998855 899999994 4556889999999999999998887899999
Q ss_pred ceeEEEEECC--EEEEEeecCCCC-----CccCeEEEEECCCCcEEEeecC---CCCCCCCcccEEEEECCc-EEEEEcc
Q 007111 99 SGHTVVRASS--VLILFGGEDGKR-----RKLNDLHMFDLKSLTWLPLHCT---GTGPSPRSNHVAALYDDK-NLLIFGG 167 (617)
Q Consensus 99 ~~~s~~~~~~--~IYv~GG~~~~~-----~~~~~v~~yD~~t~~W~~l~~~---g~~P~~R~~h~a~~~~~~-~LyV~GG 167 (617)
++|-++..-. ++|+.|-+-+.. ..-+++|+||..++.|..+... ...|...+.|.+++.+++ ++|||||
T Consensus 314 sCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGG 393 (723)
T KOG2437|consen 314 SCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGG 393 (723)
T ss_pred hhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecC
Confidence 9999988766 999999864421 1458899999999999988432 235888999999998766 7999999
Q ss_pred CCC---CCCCCeEEEEECCCCcEEEeecCCC-------CCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCC
Q 007111 168 SSK---SKTLNDLYSLDFETMIWTRIKIRGF-------HPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKG 235 (617)
Q Consensus 168 ~~~---~~~~n~v~~yD~~t~~W~~~~~~g~-------~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~ 235 (617)
+.- ...+..+|.||.....|..+...-. ....|.+|++-++ +..+|++||......++-...||+...
T Consensus 394 r~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~E 473 (723)
T KOG2437|consen 394 RILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDSE 473 (723)
T ss_pred eeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceeccc
Confidence 853 3567789999999999987653211 1245778877555 678999999876665555556665433
Q ss_pred cEEEeec--CCCCCCCCCcceEEEEEeecCCcEEEEEcCCCC-------CCCCeEEEEECCCCcccc
Q 007111 236 EWSVAIT--SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK-------EPSNQVEVLSIEKNESSM 293 (617)
Q Consensus 236 ~W~~l~~--~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~-------~~~~dV~vyd~~~~~W~~ 293 (617)
.-..+.. ....+..+-.++..-.+.....+.|.+.-|... ...+.+|+|++.++.|.-
T Consensus 474 ~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~c 540 (723)
T KOG2437|consen 474 HVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSC 540 (723)
T ss_pred cchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhh
Confidence 2211110 011111122223322333334466666666542 236889999999999843
No 30
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.55 E-value=3.3e-13 Score=138.88 Aligned_cols=258 Identities=18% Similarity=0.232 Sum_probs=181.4
Q ss_pred CCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCC--CcEEEeeccCCCC-CCcceeEEEEECCEEEEEeecCC
Q 007111 42 LKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTET--ECWSVVEAKGDIP-VARSGHTVVRASSVLILFGGEDG 118 (617)
Q Consensus 42 ~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t--~~W~~~~~~g~~P-~~R~~~s~~~~~~~IYv~GG~~~ 118 (617)
+|.+-.. -+-+.+++.+||-=|. . -...|..|++. ..|+.++ ..| .+|.+.++++++++||+|||...
T Consensus 33 lPvg~Kn-G~Ga~ig~~~YVGLGs-~----G~afy~ldL~~~~k~W~~~a---~FpG~~rnqa~~a~~~~kLyvFgG~Gk 103 (381)
T COG3055 33 LPVGFKN-GAGALIGDTVYVGLGS-A----GTAFYVLDLKKPGKGWTKIA---DFPGGARNQAVAAVIGGKLYVFGGYGK 103 (381)
T ss_pred CCccccc-cccceecceEEEEecc-C----CccceehhhhcCCCCceEcc---cCCCcccccchheeeCCeEEEeecccc
Confidence 4444443 3566778899987563 1 13578888875 4699998 566 57999999999999999999754
Q ss_pred CC----CccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCC----------------------
Q 007111 119 KR----RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK---------------------- 172 (617)
Q Consensus 119 ~~----~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~---------------------- 172 (617)
.. ...+++|+|||.+++|+++.+ ..|....+++++.+++..+|++||.....
T Consensus 104 ~~~~~~~~~nd~Y~y~p~~nsW~kl~t--~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~ 181 (381)
T COG3055 104 SVSSSPQVFNDAYRYDPSTNSWHKLDT--RSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKII 181 (381)
T ss_pred CCCCCceEeeeeEEecCCCChhheecc--ccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHH
Confidence 32 368999999999999999974 35677889999999996699999974210
Q ss_pred ------------CCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCC-CCCccceEEEEECCC--CcE
Q 007111 173 ------------TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGS-RKKRHAETLIFDILK--GEW 237 (617)
Q Consensus 173 ------------~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s-~~~~~~~v~~yDl~~--~~W 237 (617)
...+++.|||.+..|+.+... +-.++++.+.+.-++++.++-|.- ...+...++++++.. .+|
T Consensus 182 ~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~--pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w 259 (381)
T COG3055 182 AHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGEN--PFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKW 259 (381)
T ss_pred HHHhCCCHHHhcccccccccccccchhhhcCcC--cccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceee
Confidence 256799999999999988644 345777766666688788887754 345667788888764 579
Q ss_pred EEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCC--------------------CCCCeEEEEECCCCccccc---
Q 007111 238 SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK--------------------EPSNQVEVLSIEKNESSMG--- 294 (617)
Q Consensus 238 ~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~--------------------~~~~dV~vyd~~~~~W~~~--- 294 (617)
..+...|........+..-..- ....+.+++.||.+- ...++|+++| .+.|...
T Consensus 260 ~~l~~lp~~~~~~~eGvAGaf~-G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeL 336 (381)
T COG3055 260 LKLSDLPAPIGSNKEGVAGAFS-GKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGEL 336 (381)
T ss_pred eeccCCCCCCCCCccccceecc-ceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeeccc
Confidence 9987655443323233332222 233578888898631 0147899998 7778442
Q ss_pred ----cccccCccCCceeeeccCCCC
Q 007111 295 ----RRSTPNAKGPGQLLFEKRSSS 315 (617)
Q Consensus 295 ----w~~~~~~~~~~v~vfGG~~~~ 315 (617)
.--+.....+.++++||-...
T Consensus 337 p~~l~YG~s~~~nn~vl~IGGE~~~ 361 (381)
T COG3055 337 PQGLAYGVSLSYNNKVLLIGGETSG 361 (381)
T ss_pred CCCccceEEEecCCcEEEEccccCC
Confidence 122233367889999998653
No 31
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.42 E-value=8.5e-14 Score=147.31 Aligned_cols=203 Identities=22% Similarity=0.371 Sum_probs=156.2
Q ss_pred CCcEEEeeccC-------CCCCCcceeEEEEECC--EEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCccc
Q 007111 82 TECWSVVEAKG-------DIPVARSGHTVVRASS--VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 152 (617)
Q Consensus 82 t~~W~~~~~~g-------~~P~~R~~~s~~~~~~--~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 152 (617)
+..|.+++.+. ..|..|.||.++...+ .||++||.++.. .+.++|.|+...+.|+.+..-+..|..|..|
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~-~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCH 316 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQ-DLADFWAYSVKENQWTCINRDTEGPGARSCH 316 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccch-hHHHHHhhcCCcceeEEeecCCCCCcchhhh
Confidence 45788877654 4688999999999865 999999999975 5899999999999999997767789999999
Q ss_pred EEEEECC-cEEEEEccCCCC------CCCCeEEEEECCCCcEEEeecCCC---CCCCCcceEEEEECCE--EEEEecCCC
Q 007111 153 VAALYDD-KNLLIFGGSSKS------KTLNDLYSLDFETMIWTRIKIRGF---HPSPRAGCCGVLCGTK--WYIAGGGSR 220 (617)
Q Consensus 153 ~a~~~~~-~~LyV~GG~~~~------~~~n~v~~yD~~t~~W~~~~~~g~---~P~~R~~ha~v~~~~~--IyI~GG~s~ 220 (617)
.++..-. ..+|+.|-+-+. .-..++|+||..++.|.-+..... -|...+.|.+++.+++ +||+||+.-
T Consensus 317 RMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~ 396 (723)
T KOG2437|consen 317 RMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRIL 396 (723)
T ss_pred hhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeec
Confidence 9998754 239999987432 235689999999999998764211 3666788999999877 999999864
Q ss_pred C---CccceEEEEECCCCcEEEeecCC------CCCCCCCcceEEEEEeecCCcEEEEEcCCCCCC-CCeEEEEECC
Q 007111 221 K---KRHAETLIFDILKGEWSVAITSP------SSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIE 287 (617)
Q Consensus 221 ~---~~~~~v~~yDl~~~~W~~l~~~~------~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~-~~dV~vyd~~ 287 (617)
. ..+.-+|.||.....|..+.... ......|.+|++-... +...+|+|||..... ++-.+.|++.
T Consensus 397 ~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~--~n~~ly~fggq~s~~El~L~f~y~I~ 471 (723)
T KOG2437|consen 397 TCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHS--KNRCLYVFGGQRSKTELNLFFSYDID 471 (723)
T ss_pred cCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcC--CCCeEEeccCcccceEEeehhcceec
Confidence 3 34567999999999998764311 2235577888877665 468899999986543 4445556554
No 32
>PF13964 Kelch_6: Kelch motif
Probab=98.95 E-value=1.5e-09 Score=82.58 Aligned_cols=50 Identities=34% Similarity=0.619 Sum_probs=45.8
Q ss_pred CcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCC
Q 007111 97 ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR 149 (617)
Q Consensus 97 ~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R 149 (617)
+|.+|++++++++|||+||.......++++++||+.+++|+.++ +||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence 58999999999999999999885568999999999999999994 899887
No 33
>PF13964 Kelch_6: Kelch motif
Probab=98.95 E-value=1.7e-09 Score=82.40 Aligned_cols=50 Identities=32% Similarity=0.564 Sum_probs=44.7
Q ss_pred cccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCc
Q 007111 46 ACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVAR 98 (617)
Q Consensus 46 ~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R 98 (617)
+|.+|++|+++++||||||........+++++||+.+++|+.++ +||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence 46789999999999999999765667889999999999999998 888877
No 34
>PLN02772 guanylate kinase
Probab=98.82 E-value=2e-08 Score=107.35 Aligned_cols=89 Identities=18% Similarity=0.336 Sum_probs=77.6
Q ss_pred CCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCC
Q 007111 95 PVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTL 174 (617)
Q Consensus 95 P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~ 174 (617)
+.++.+++++.+++++||+||.+..+..++.+|+||..+++|....+.|..|.+|.+|++|++++.+|+|+++.+...
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~-- 99 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD-- 99 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc--
Confidence 558899999999999999999988665789999999999999999889999999999999999776699998776542
Q ss_pred CeEEEEECCCC
Q 007111 175 NDLYSLDFETM 185 (617)
Q Consensus 175 n~v~~yD~~t~ 185 (617)
.++|.+...|.
T Consensus 100 ~~~w~l~~~t~ 110 (398)
T PLN02772 100 DSIWFLEVDTP 110 (398)
T ss_pred cceEEEEcCCH
Confidence 66888877664
No 35
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.75 E-value=1.9e-08 Score=76.33 Aligned_cols=48 Identities=42% Similarity=0.762 Sum_probs=43.0
Q ss_pred CCEEEEEeecC-CCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE
Q 007111 107 SSVLILFGGED-GKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 157 (617)
Q Consensus 107 ~~~IYv~GG~~-~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~ 157 (617)
+++||||||.+ .....++++|+||+.+++|+++ +++|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 57899999998 4556899999999999999998 689999999999874
No 36
>PLN02772 guanylate kinase
Probab=98.74 E-value=6.1e-08 Score=103.71 Aligned_cols=88 Identities=19% Similarity=0.309 Sum_probs=76.6
Q ss_pred CCCCCCcccEEEEECCcEEEEEccCCCCC-CCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCC
Q 007111 144 TGPSPRSNHVAALYDDKNLLIFGGSSKSK-TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRK 221 (617)
Q Consensus 144 ~~P~~R~~h~a~~~~~~~LyV~GG~~~~~-~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~ 221 (617)
--+.++..++++.++++ +|||||..... .++.+++||..+.+|..+...|.+|.||.+|+++.+ +++|+|+++.+..
T Consensus 20 ~~~~~~~~~tav~igdk-~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~ 98 (398)
T PLN02772 20 FGVKPKNRETSVTIGDK-TYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP 98 (398)
T ss_pred ccCCCCCcceeEEECCE-EEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC
Confidence 34568899999999999 99999987654 789999999999999999999999999999999998 7899999976544
Q ss_pred CccceEEEEECCC
Q 007111 222 KRHAETLIFDILK 234 (617)
Q Consensus 222 ~~~~~v~~yDl~~ 234 (617)
. +++|++.+++
T Consensus 99 ~--~~~w~l~~~t 109 (398)
T PLN02772 99 D--DSIWFLEVDT 109 (398)
T ss_pred c--cceEEEEcCC
Confidence 2 6788888765
No 37
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.68 E-value=3.4e-08 Score=73.89 Aligned_cols=44 Identities=32% Similarity=0.611 Sum_probs=40.6
Q ss_pred CcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEee
Q 007111 97 ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLH 140 (617)
Q Consensus 97 ~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~ 140 (617)
+|++|++++++++||++||.+.....++++++||+.+++|+.++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 58999999999999999999986678999999999999999985
No 38
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.67 E-value=3.8e-08 Score=74.66 Aligned_cols=48 Identities=40% Similarity=0.812 Sum_probs=42.3
Q ss_pred CCEEEEEcccC-CCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE
Q 007111 56 GKKVLLVGGKT-DSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA 106 (617)
Q Consensus 56 g~~lyV~GG~~-~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~ 106 (617)
|++||||||.. ......+++|+||+.+++|+.++ ++|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~---~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIG---DLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECC---CCCCCccceEEEEC
Confidence 68999999997 35667789999999999999995 89999999999864
No 39
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.65 E-value=4.5e-08 Score=73.24 Aligned_cols=44 Identities=27% Similarity=0.528 Sum_probs=39.9
Q ss_pred cccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEee
Q 007111 46 ACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVE 89 (617)
Q Consensus 46 ~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 89 (617)
+|.+|++++++++|||+||........+++++||+.+++|+.++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 47789999999999999999775777899999999999999998
No 40
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.58 E-value=6.2e-08 Score=73.27 Aligned_cols=47 Identities=38% Similarity=0.730 Sum_probs=32.2
Q ss_pred CcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCC
Q 007111 97 ARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP 146 (617)
Q Consensus 97 ~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P 146 (617)
+|++|+++.+ ++.||||||.+..+..++++|+||+.+++|+++ +++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~---~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL---PSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-----SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC---CCCC
Confidence 5899999998 489999999998877899999999999999999 3666
No 41
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.54 E-value=7.6e-08 Score=72.79 Aligned_cols=47 Identities=34% Similarity=0.715 Sum_probs=31.4
Q ss_pred cccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCC
Q 007111 46 ACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP 95 (617)
Q Consensus 46 ~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P 95 (617)
+|.+|+++.+ +++||||||.......++++|+||+.+++|++++ ++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~---~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP---SMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-----SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC---CCC
Confidence 4778999998 5899999999776678899999999999999996 555
No 42
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.52 E-value=2.5e-07 Score=70.08 Aligned_cols=44 Identities=36% Similarity=0.696 Sum_probs=39.2
Q ss_pred cccceEEEEECCEEEEEccc--CCCCCCceEEEEEECCCCcEEEee
Q 007111 46 ACRGHSLISWGKKVLLVGGK--TDSGSDRVSVWTFDTETECWSVVE 89 (617)
Q Consensus 46 ~r~~hs~v~~g~~lyV~GG~--~~~~~~~~~v~~yd~~t~~W~~~~ 89 (617)
+|.+|++++++++||||||. .......+++++||+.+++|+.++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 47789999999999999999 445567789999999999999997
No 43
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.51 E-value=2.3e-07 Score=70.33 Aligned_cols=45 Identities=36% Similarity=0.649 Sum_probs=41.0
Q ss_pred CCcccEEEEECCcEEEEEccC---CCCCCCCeEEEEECCCCcEEEeecC
Q 007111 148 PRSNHVAALYDDKNLLIFGGS---SKSKTLNDLYSLDFETMIWTRIKIR 193 (617)
Q Consensus 148 ~R~~h~a~~~~~~~LyV~GG~---~~~~~~n~v~~yD~~t~~W~~~~~~ 193 (617)
+|++|++++++++ ||||||+ ......++++.||+++.+|+.+..+
T Consensus 1 ~r~~hs~~~~~~k-iyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGK-IYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCE-EEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 6899999999999 9999999 4567899999999999999998775
No 44
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.39 E-value=2.5e-05 Score=79.23 Aligned_cols=153 Identities=15% Similarity=0.173 Sum_probs=98.3
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEE-EECCEEEEEeecCCCCCccCeEEEEECCC----CcEEEeecCCCCCC
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVV-RASSVLILFGGEDGKRRKLNDLHMFDLKS----LTWLPLHCTGTGPS 147 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~-~~~~~IYv~GG~~~~~~~~~~v~~yD~~t----~~W~~l~~~g~~P~ 147 (617)
..-..||+.+++++.+.. +.--.+.+.+ .-+|.+++.||.... ...+..|++.+ ..|.+.. ..|..
T Consensus 46 a~s~~yD~~tn~~rpl~v----~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~--~~m~~ 116 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTV----QTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESP--NDMQS 116 (243)
T ss_pred EEEEEEecCCCcEEeccC----CCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECc--ccccC
Confidence 346789999999998863 3333333333 346899999998653 35677888865 5798874 35889
Q ss_pred CCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECC-C-----CcEEEeecCC-CCCCCCcceEEEEECCEEEEEecCCC
Q 007111 148 PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFE-T-----MIWTRIKIRG-FHPSPRAGCCGVLCGTKWYIAGGGSR 220 (617)
Q Consensus 148 ~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~-t-----~~W~~~~~~g-~~P~~R~~ha~v~~~~~IyI~GG~s~ 220 (617)
+|-..+++...+..++|+||.... .+.|-+. . ..|..+.... ..+..-+=+..+.-+++||+++..
T Consensus 117 ~RWYpT~~~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-- 189 (243)
T PF07250_consen 117 GRWYPTATTLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-- 189 (243)
T ss_pred CCccccceECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC--
Confidence 998888888865559999998732 2333332 1 1222222110 112233334444459999999884
Q ss_pred CCccceEEEEECCCCcE-EEeecCCCC
Q 007111 221 KKRHAETLIFDILKGEW-SVAITSPSS 246 (617)
Q Consensus 221 ~~~~~~v~~yDl~~~~W-~~l~~~~~~ 246 (617)
..++||..++++ ..++..|..
T Consensus 190 -----~s~i~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 190 -----GSIIYDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred -----CcEEEeCCCCeEEeeCCCCCCC
Confidence 357899999977 677765544
No 45
>PF13854 Kelch_5: Kelch motif
Probab=98.33 E-value=1e-06 Score=64.56 Aligned_cols=41 Identities=39% Similarity=0.658 Sum_probs=36.9
Q ss_pred CCCCcceeEEEEECCEEEEEeecCC-CCCccCeEEEEECCCC
Q 007111 94 IPVARSGHTVVRASSVLILFGGEDG-KRRKLNDLHMFDLKSL 134 (617)
Q Consensus 94 ~P~~R~~~s~~~~~~~IYv~GG~~~-~~~~~~~v~~yD~~t~ 134 (617)
+|.+|.+|++++++++|||+||.+. ....++++|+||+.++
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4889999999999999999999994 6668999999999874
No 46
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.27 E-value=7.3e-05 Score=75.68 Aligned_cols=158 Identities=22% Similarity=0.282 Sum_probs=100.2
Q ss_pred EEEEcccCCCCCCceEEEEEECCCCc--------EEEeeccCCCCCCcceeEEEEEC----CEEEEEeecCCC--C----
Q 007111 59 VLLVGGKTDSGSDRVSVWTFDTETEC--------WSVVEAKGDIPVARSGHTVVRAS----SVLILFGGEDGK--R---- 120 (617)
Q Consensus 59 lyV~GG~~~~~~~~~~v~~yd~~t~~--------W~~~~~~g~~P~~R~~~s~~~~~----~~IYv~GG~~~~--~---- 120 (617)
.+|.||.+++..-.+.+|+....+.. .......|++|.+|++|++.++. .-+.+|||+... +
T Consensus 41 YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTT 120 (337)
T PF03089_consen 41 YLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTT 120 (337)
T ss_pred EEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccch
Confidence 55668988777777788887765432 33444458999999999998873 378899998531 1
Q ss_pred -------CccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCC--CCCCCeEEEEECCCC---cEE
Q 007111 121 -------RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK--SKTLNDLYSLDFETM---IWT 188 (617)
Q Consensus 121 -------~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~--~~~~n~v~~yD~~t~---~W~ 188 (617)
.....|+.+|+.-..++... ...+..+.+.|.+..-+|. +|++||..- +.....++++..+-- -+-
T Consensus 121 enWNsVvDC~P~VfLiDleFGC~tah~-lpEl~dG~SFHvslar~D~-VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~v 198 (337)
T PF03089_consen 121 ENWNSVVDCPPQVFLIDLEFGCCTAHT-LPELQDGQSFHVSLARNDC-VYILGGHSLESDSRPPRLYRLKVDLLLGSPAV 198 (337)
T ss_pred hhcceeccCCCeEEEEecccccccccc-chhhcCCeEEEEEEecCce-EEEEccEEccCCCCCCcEEEEEEeecCCCcee
Confidence 13456888999887776542 2345567777888887888 999999853 334455666654311 111
Q ss_pred EeecCCCCCCCCcceEEEE--E-CCEEEEEecCCCC
Q 007111 189 RIKIRGFHPSPRAGCCGVL--C-GTKWYIAGGGSRK 221 (617)
Q Consensus 189 ~~~~~g~~P~~R~~ha~v~--~-~~~IyI~GG~s~~ 221 (617)
..... +.+.+..++++ . .+..+|+||+..+
T Consensus 199 sC~vl---~~glSisSAIvt~~~~~e~iIlGGY~sd 231 (337)
T PF03089_consen 199 SCTVL---QGGLSISSAIVTQTGPHEYIILGGYQSD 231 (337)
T ss_pred EEEEC---CCCceEeeeeEeecCCCceEEEeccccc
Confidence 11111 33333333332 2 4567888997543
No 47
>smart00612 Kelch Kelch domain.
Probab=98.27 E-value=1.2e-06 Score=64.72 Aligned_cols=47 Identities=32% Similarity=0.684 Sum_probs=40.9
Q ss_pred EEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECC
Q 007111 109 VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDD 159 (617)
Q Consensus 109 ~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~ 159 (617)
+||++||.... ...+++++||+.+++|+.++ +||.+|+.|+++++++
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence 48999998763 46899999999999999884 8999999999988764
No 48
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.22 E-value=0.00065 Score=68.29 Aligned_cols=207 Identities=12% Similarity=0.116 Sum_probs=111.7
Q ss_pred EEEEEECCCCcEEEeeccCCCCCCcce-eEEEEEC----C-EEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCC
Q 007111 74 SVWTFDTETECWSVVEAKGDIPVARSG-HTVVRAS----S-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPS 147 (617)
Q Consensus 74 ~v~~yd~~t~~W~~~~~~g~~P~~R~~-~s~~~~~----~-~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~ 147 (617)
.++++||.|+.|..+|.....+..... .....++ . +|..+....... ....+++|+..++.|+.+.. ..+.
T Consensus 15 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~-~~~~~~Vys~~~~~Wr~~~~--~~~~ 91 (230)
T TIGR01640 15 RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR-NQSEHQVYTLGSNSWRTIEC--SPPH 91 (230)
T ss_pred cEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC-CCccEEEEEeCCCCcccccc--CCCC
Confidence 699999999999999732110000111 1112222 1 555554432211 34578999999999999852 1222
Q ss_pred CCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEE-eecCCCCCCCCcceEEEEECCEEEEEecCCCCCccce
Q 007111 148 PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-IKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAE 226 (617)
Q Consensus 148 ~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~-~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~ 226 (617)
.......+.++|. +|-+...........|..||+.+.+|.. ++.............++.+++++.++...... ..-+
T Consensus 92 ~~~~~~~v~~~G~-lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~-~~~~ 169 (230)
T TIGR01640 92 HPLKSRGVCINGV-LYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDT-NNFD 169 (230)
T ss_pred ccccCCeEEECCE-EEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCCC-CcEE
Confidence 1222236677888 6666543221111269999999999995 43311000112234566678998887654321 2257
Q ss_pred EEEEE-CCCCcEEEeecCCCCC-CCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 227 TLIFD-ILKGEWSVAITSPSSS-VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 227 v~~yD-l~~~~W~~l~~~~~~~-p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
+|+++ -....|+..-..+... +.....+...-+. +++.|++..+.. ..--+.+||+.++
T Consensus 170 IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~--~~g~I~~~~~~~--~~~~~~~y~~~~~ 230 (230)
T TIGR01640 170 LWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFT--DKGEIVLCCEDE--NPFYIFYYNVGEN 230 (230)
T ss_pred EEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEe--eCCEEEEEeCCC--CceEEEEEeccCC
Confidence 89886 3356799876554321 1111111111222 235666655431 1114889998775
No 49
>smart00612 Kelch Kelch domain.
Probab=98.18 E-value=2.5e-06 Score=63.06 Aligned_cols=46 Identities=26% Similarity=0.441 Sum_probs=40.5
Q ss_pred EEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECC
Q 007111 162 LLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGT 210 (617)
Q Consensus 162 LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~ 210 (617)
|||+||.......+++++||+.+++|+.++++ |.+|..|+++.+++
T Consensus 2 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~g 47 (47)
T smart00612 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSM---PTPRSGHGVAVING 47 (47)
T ss_pred EEEEeCCCCCceeeeEEEECCCCCeEccCCCC---CCccccceEEEeCC
Confidence 89999998767789999999999999998765 88999999887764
No 50
>PF13854 Kelch_5: Kelch motif
Probab=98.16 E-value=3.5e-06 Score=61.73 Aligned_cols=39 Identities=44% Similarity=0.714 Sum_probs=35.3
Q ss_pred CCCCCcccEEEEECCcEEEEEccCC--CCCCCCeEEEEECCC
Q 007111 145 GPSPRSNHVAALYDDKNLLIFGGSS--KSKTLNDLYSLDFET 184 (617)
Q Consensus 145 ~P~~R~~h~a~~~~~~~LyV~GG~~--~~~~~n~v~~yD~~t 184 (617)
+|.+|++|++++++++ ||||||.+ ....++++|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~-iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNN-IYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCE-EEEEcCccCCCCCEECcEEEEECCC
Confidence 4889999999999988 99999998 477899999999875
No 51
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.91 E-value=0.0036 Score=62.92 Aligned_cols=203 Identities=13% Similarity=0.079 Sum_probs=113.5
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcc--cceEEEE-ECC-EEEEEcccCCCCCCceEEEEEECCCCcEEEee
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPAC--RGHSLIS-WGK-KVLLVGGKTDSGSDRVSVWTFDTETECWSVVE 89 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r--~~hs~v~-~g~-~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 89 (617)
..+.++||.|.+|..++.... + ...+.+ .+++... .+. +|+.+..... ......+.+|+..++.|+.+.
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~--~----~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~-~~~~~~~~Vys~~~~~Wr~~~ 86 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKS--R----RSNKESDTYFLGYDPIEKQYKVLCFSDRSG-NRNQSEHQVYTLGSNSWRTIE 86 (230)
T ss_pred CcEEEECCCCCCEEecCCCCC--c----ccccccceEEEeecccCCcEEEEEEEeecC-CCCCccEEEEEeCCCCccccc
Confidence 578999999999999975210 0 001111 1111111 122 4555544311 113357899999999999987
Q ss_pred ccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEE-eecCCCCCCCCc----ccEEEEECCcEEEE
Q 007111 90 AKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP-LHCTGTGPSPRS----NHVAALYDDKNLLI 164 (617)
Q Consensus 90 ~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~-l~~~g~~P~~R~----~h~a~~~~~~~LyV 164 (617)
.. .+........+.++|.+|-+.-..... ....+..||+.+.+|.. ++ +|..+. ....+.++++ |.+
T Consensus 87 ~~--~~~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~~G~-L~~ 158 (230)
T TIGR01640 87 CS--PPHHPLKSRGVCINGVLYYLAYTLKTN-PDYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINYKGK-LAV 158 (230)
T ss_pred cC--CCCccccCCeEEECCEEEEEEEECCCC-CcEEEEEEEcccceEeeeee----cCccccccccceEEEEECCE-EEE
Confidence 32 121111222667899888887543321 12369999999999995 63 343332 3355666777 766
Q ss_pred EccCCCCCCCCeEEEEE-CCCCcEEEeecCCCCCCCCc----ceEEEEECCEEEEEecCCCCCccceEEEEECCCC
Q 007111 165 FGGSSKSKTLNDLYSLD-FETMIWTRIKIRGFHPSPRA----GCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG 235 (617)
Q Consensus 165 ~GG~~~~~~~n~v~~yD-~~t~~W~~~~~~g~~P~~R~----~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~ 235 (617)
+....... .-+||+.+ .....|++.-..+.++.+.. ....+..++.|++..+.. . ..-+..||+.++
T Consensus 159 v~~~~~~~-~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~-~--~~~~~~y~~~~~ 230 (230)
T TIGR01640 159 LKQKKDTN-NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE-N--PFYIFYYNVGEN 230 (230)
T ss_pred EEecCCCC-cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC-C--ceEEEEEeccCC
Confidence 65443211 13677775 44667998654321122211 123444578888876531 0 113788888764
No 52
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.69 E-value=0.00083 Score=68.21 Aligned_cols=143 Identities=16% Similarity=0.101 Sum_probs=87.1
Q ss_pred EEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCC----CcEEEeecCCCCCCCC
Q 007111 126 LHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFET----MIWTRIKIRGFHPSPR 200 (617)
Q Consensus 126 v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t----~~W~~~~~~g~~P~~R 200 (617)
-..||+.+++++.+.+ +..-...+.+.. +++ ++++||...+ ...+-.|++.+ ..|.+.... +..+|
T Consensus 48 s~~yD~~tn~~rpl~v----~td~FCSgg~~L~dG~-ll~tGG~~~G--~~~ir~~~p~~~~~~~~w~e~~~~--m~~~R 118 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTV----QTDTFCSGGAFLPDGR-LLQTGGDNDG--NKAIRIFTPCTSDGTCDWTESPND--MQSGR 118 (243)
T ss_pred EEEEecCCCcEEeccC----CCCCcccCcCCCCCCC-EEEeCCCCcc--ccceEEEecCCCCCCCCceECccc--ccCCC
Confidence 4679999999998853 232222233333 555 9999998653 34567788754 678877642 47899
Q ss_pred cceEEEEE-CCEEEEEecCCCCCccceEEEEECCC-----CcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCC
Q 007111 201 AGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILK-----GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 274 (617)
Q Consensus 201 ~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~-----~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~ 274 (617)
...++..+ +++++|+||..... ...+.... ..|..+.......+ ...+.-+.++. +++||+++..
T Consensus 119 WYpT~~~L~DG~vlIvGG~~~~t----~E~~P~~~~~~~~~~~~~l~~~~~~~~-~nlYP~~~llP---dG~lFi~an~- 189 (243)
T PF07250_consen 119 WYPTATTLPDGRVLIVGGSNNPT----YEFWPPKGPGPGPVTLPFLSQTSDTLP-NNLYPFVHLLP---DGNLFIFANR- 189 (243)
T ss_pred ccccceECCCCCEEEEeCcCCCc----ccccCCccCCCCceeeecchhhhccCc-cccCceEEEcC---CCCEEEEEcC-
Confidence 98888887 88999999987321 22223211 12222221111111 22222333443 4779999986
Q ss_pred CCCCCeEEEEECCCCcc
Q 007111 275 KEPSNQVEVLSIEKNES 291 (617)
Q Consensus 275 ~~~~~dV~vyd~~~~~W 291 (617)
.-.+||..++++
T Consensus 190 -----~s~i~d~~~n~v 201 (243)
T PF07250_consen 190 -----GSIIYDYKTNTV 201 (243)
T ss_pred -----CcEEEeCCCCeE
Confidence 347889999876
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.18 E-value=0.32 Score=52.98 Aligned_cols=220 Identities=16% Similarity=0.161 Sum_probs=116.8
Q ss_pred ceEEEEECCCCc--EEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEee
Q 007111 14 DDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVE 89 (617)
Q Consensus 14 ~~v~~yd~~t~~--W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~ 89 (617)
..+++||..+++ |..-..... .. .+...+.+...+.+..+++||+.+.. ..++.||..+.+ |+.-.
T Consensus 79 g~l~ald~~tG~~~W~~~~~~~~-~~--~~~~~~~~~~~~~~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 79 GLVKALDADTGKEIWSVDLSEKD-GW--FSKNKSALLSGGVTVAGGKVYIGSEK-------GQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred CeEEEEECCCCcEeeEEcCCCcc-cc--cccccccccccccEEECCEEEEEcCC-------CEEEEEECCCCCCcccccC
Confidence 368999987554 975432100 00 00011222233456678899875321 369999998764 96543
Q ss_pred ccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEeecCCCCCC--CCcccEEEEECCcEEEEE
Q 007111 90 AKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPS--PRSNHVAALYDDKNLLIF 165 (617)
Q Consensus 90 ~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~--~R~~h~a~~~~~~~LyV~ 165 (617)
. .. ...+-++.++.+|+..+ ...++.||+.+.+ |+.-. ..|. .+...+-++.++. +|+.
T Consensus 149 ~-----~~-~~ssP~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~---~~~~~~~~~~~sP~v~~~~-v~~~ 211 (394)
T PRK11138 149 A-----GE-ALSRPVVSDGLVLVHTS-------NGMLQALNESDGAVKWTVNL---DVPSLTLRGESAPATAFGG-AIVG 211 (394)
T ss_pred C-----Cc-eecCCEEECCEEEEECC-------CCEEEEEEccCCCEeeeecC---CCCcccccCCCCCEEECCE-EEEE
Confidence 1 11 11223445778887432 2469999998876 88642 1121 1212233344554 5553
Q ss_pred ccCCCCCCCCeEEEEECCCC--cEEEeecCCC--CCC---CCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCc--
Q 007111 166 GGSSKSKTLNDLYSLDFETM--IWTRIKIRGF--HPS---PRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE-- 236 (617)
Q Consensus 166 GG~~~~~~~n~v~~yD~~t~--~W~~~~~~g~--~P~---~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~-- 236 (617)
..+ ..++.+|+.++ .|+.....+. ... .....+-+..++.+|+.+. . ..++.+|+.+.+
T Consensus 212 -~~~-----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-~-----g~l~ald~~tG~~~ 279 (394)
T PRK11138 212 -GDN-----GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-N-----GNLVALDLRSGQIV 279 (394)
T ss_pred -cCC-----CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc-C-----CeEEEEECCCCCEE
Confidence 332 34888888776 4764322110 000 0111233456888888653 1 358999998764
Q ss_pred EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 237 WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 237 W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
|+.-. ..+ ...++. .+.||+.... ..++.+|+.+.+
T Consensus 280 W~~~~----~~~-----~~~~~~----~~~vy~~~~~-----g~l~ald~~tG~ 315 (394)
T PRK11138 280 WKREY----GSV-----NDFAVD----GGRIYLVDQN-----DRVYALDTRGGV 315 (394)
T ss_pred EeecC----CCc-----cCcEEE----CCEEEEEcCC-----CeEEEEECCCCc
Confidence 87631 111 112222 3677775532 368888887654
No 54
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.13 E-value=0.34 Score=52.19 Aligned_cols=211 Identities=16% Similarity=0.170 Sum_probs=110.4
Q ss_pred ceEEEEECCCCc--EEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEee
Q 007111 14 DDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVE 89 (617)
Q Consensus 14 ~~v~~yd~~t~~--W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~ 89 (617)
..+++||+.+++ |..-... ....+.+..++.+|+.+.. ..++.||+.+.+ |+...
T Consensus 75 g~v~a~d~~tG~~~W~~~~~~--------------~~~~~p~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~~~~ 133 (377)
T TIGR03300 75 GTVVALDAETGKRLWRVDLDE--------------RLSGGVGADGGLVFVGTEK-------GEVIALDAEDGKELWRAKL 133 (377)
T ss_pred CeEEEEEccCCcEeeeecCCC--------------CcccceEEcCCEEEEEcCC-------CEEEEEECCCCcEeeeecc
Confidence 369999987655 8654321 1112234457777764321 369999987764 86543
Q ss_pred ccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEeecCCCCCCCCcccEEEEECCcEEEEEcc
Q 007111 90 AKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGG 167 (617)
Q Consensus 90 ~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG 167 (617)
+.. ...+.+..++.+|+..+ ...++.+|+.+.+ |+.-.. .+....+...+.+..++. + ++|.
T Consensus 134 -----~~~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~-~~~~~~~~~~sp~~~~~~-v-~~~~ 197 (377)
T TIGR03300 134 -----SSE-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRV-TPALTLRGSASPVIADGG-V-LVGF 197 (377)
T ss_pred -----Cce-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccC-CCceeecCCCCCEEECCE-E-EEEC
Confidence 111 11223345677777432 2458999998764 875421 111011222333444543 4 4554
Q ss_pred CCCCCCCCeEEEEECCCC--cEEEeecCCC--CCCCC---cceEEEEECCEEEEEecCCCCCccceEEEEECCCC--cEE
Q 007111 168 SSKSKTLNDLYSLDFETM--IWTRIKIRGF--HPSPR---AGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG--EWS 238 (617)
Q Consensus 168 ~~~~~~~n~v~~yD~~t~--~W~~~~~~g~--~P~~R---~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~--~W~ 238 (617)
.++ .++.+|+.++ .|+.-...+. ....+ ...+.+..++.+|+.+.. ..++.||+.+. .|.
T Consensus 198 ~~g-----~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~------g~l~a~d~~tG~~~W~ 266 (377)
T TIGR03300 198 AGG-----KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ------GRVAALDLRSGRVLWK 266 (377)
T ss_pred CCC-----EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC------CEEEEEECCCCcEEEe
Confidence 332 5899998775 4764322100 00001 112334458888886532 35899998765 376
Q ss_pred EeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 239 VAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 239 ~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.-. + ..+..++. ++.||+... ...++++|..+.+
T Consensus 267 ~~~--~--------~~~~p~~~---~~~vyv~~~-----~G~l~~~d~~tG~ 300 (377)
T TIGR03300 267 RDA--S--------SYQGPAVD---DNRLYVTDA-----DGVVVALDRRSGS 300 (377)
T ss_pred ecc--C--------CccCceEe---CCEEEEECC-----CCeEEEEECCCCc
Confidence 621 1 11112222 366776542 2368888887653
No 55
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.01 E-value=0.43 Score=51.94 Aligned_cols=210 Identities=18% Similarity=0.204 Sum_probs=112.9
Q ss_pred ceEEEEECCCC--cEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEee
Q 007111 14 DDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVE 89 (617)
Q Consensus 14 ~~v~~yd~~t~--~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~ 89 (617)
..++++|..++ .|+.-... +. ..+-+..++.+|+..+. ..++.||+.+.+ |+.-.
T Consensus 130 g~l~ald~~tG~~~W~~~~~~------------~~--~ssP~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~~~~ 188 (394)
T PRK11138 130 GQVYALNAEDGEVAWQTKVAG------------EA--LSRPVVSDGLVLVHTSN-------GMLQALNESDGAVKWTVNL 188 (394)
T ss_pred CEEEEEECCCCCCcccccCCC------------ce--ecCCEEECCEEEEECCC-------CEEEEEEccCCCEeeeecC
Confidence 36899998665 48654321 11 12234557888875432 269999998876 87653
Q ss_pred ccCCCCC--CcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEeec--CCCCCCCC---cccEEEEECCc
Q 007111 90 AKGDIPV--ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHC--TGTGPSPR---SNHVAALYDDK 160 (617)
Q Consensus 90 ~~g~~P~--~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~--~g~~P~~R---~~h~a~~~~~~ 160 (617)
..|. .+...+-+..++.+|+..+ ...++.+|+.+.+ |+.-.. .+.....| ...+-++.++.
T Consensus 189 ---~~~~~~~~~~~sP~v~~~~v~~~~~-------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~ 258 (394)
T PRK11138 189 ---DVPSLTLRGESAPATAFGGAIVGGD-------NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGV 258 (394)
T ss_pred ---CCCcccccCCCCCEEECCEEEEEcC-------CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCE
Confidence 1221 1222233445667666432 2357888988765 874210 00000001 11233345665
Q ss_pred EEEEEccCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCC--c
Q 007111 161 NLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG--E 236 (617)
Q Consensus 161 ~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~--~ 236 (617)
+|+.+. + ..++.+|+.+++ |+.... .+ ...+..++.||+.... ..++.+|+.+. .
T Consensus 259 -vy~~~~-~-----g~l~ald~~tG~~~W~~~~~-----~~---~~~~~~~~~vy~~~~~------g~l~ald~~tG~~~ 317 (394)
T PRK11138 259 -VYALAY-N-----GNLVALDLRSGQIVWKREYG-----SV---NDFAVDGGRIYLVDQN------DRVYALDTRGGVEL 317 (394)
T ss_pred -EEEEEc-C-----CeEEEEECCCCCEEEeecCC-----Cc---cCcEEECCEEEEEcCC------CeEEEEECCCCcEE
Confidence 777543 2 359999998764 875321 11 1235568999987532 35899998876 4
Q ss_pred EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 237 WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 237 W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
|+.-.. ..+...+.++. ++.||+ |..+ ..++++|..+.+
T Consensus 318 W~~~~~------~~~~~~sp~v~----~g~l~v-~~~~----G~l~~ld~~tG~ 356 (394)
T PRK11138 318 WSQSDL------LHRLLTAPVLY----NGYLVV-GDSE----GYLHWINREDGR 356 (394)
T ss_pred Eccccc------CCCcccCCEEE----CCEEEE-EeCC----CEEEEEECCCCC
Confidence 765210 11111222232 256654 3332 257778877664
No 56
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.90 E-value=0.34 Score=48.90 Aligned_cols=211 Identities=11% Similarity=0.045 Sum_probs=113.0
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeecc
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 91 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 91 (617)
..++.+++.+..-..+.. +.. .+++.. ++.+|+.... ...++|+.+..++.+...
T Consensus 22 ~~i~~~~~~~~~~~~~~~-------------~~~--~G~~~~~~~g~l~v~~~~--------~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 22 GRIYRVDPDTGEVEVIDL-------------PGP--NGMAFDRPDGRLYVADSG--------GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp TEEEEEETTTTEEEEEES-------------SSE--EEEEEECTTSEEEEEETT--------CEEEEETTTTEEEEEEEE
T ss_pred CEEEEEECCCCeEEEEec-------------CCC--ceEEEEccCCEEEEEEcC--------ceEEEecCCCcEEEEeec
Confidence 468889998887655443 112 334443 6888888653 256679999999888743
Q ss_pred --CCCCCCcceeEEEEECCEEEEEeecCCCCCcc--CeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEc
Q 007111 92 --GDIPVARSGHTVVRASSVLILFGGEDGKRRKL--NDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFG 166 (617)
Q Consensus 92 --g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~--~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~G 166 (617)
+..+..+..-.++--++.||+-.-........ ..+|++++. .+...+.. .+.. --+.++. +++.||+.-
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~---pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGF---PNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESS---EEEEEEETTSSEEEEEE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--Cccc---ccceEECCcchheeecc
Confidence 11133444444444467877754322211112 679999998 66665531 1211 1244444 455577743
Q ss_pred cCCCCCCCCeEEEEECCC--CcEEEeecCCCCCCCCcce-EEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeec
Q 007111 167 GSSKSKTLNDLYSLDFET--MIWTRIKIRGFHPSPRAGC-CGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 242 (617)
Q Consensus 167 G~~~~~~~n~v~~yD~~t--~~W~~~~~~g~~P~~R~~h-a~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~ 242 (617)
-. .+.|++|++.. ..+.........+...... .++.. +++||+..-.. ..+++||+.......+..
T Consensus 153 s~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~-----~~I~~~~p~G~~~~~i~~ 222 (246)
T PF08450_consen 153 SF-----NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG-----GRIVVFDPDGKLLREIEL 222 (246)
T ss_dssp TT-----TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT-----TEEEEEETTSCEEEEEE-
T ss_pred cc-----cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC-----CEEEEECCCccEEEEEcC
Confidence 22 34599999853 3344332211112222122 33433 78899983322 469999999666666652
Q ss_pred CCCCCCCCCcceEEEEEeecCCcEEEEE
Q 007111 243 SPSSSVTSNKGFTLVLVQHKEKDFLVAF 270 (617)
Q Consensus 243 ~~~~~p~~r~~~s~v~v~~~~~~~L~I~ 270 (617)
+ .. ..+.+++...+.+.|||.
T Consensus 223 p-----~~--~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 223 P-----VP--RPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp S-----SS--SEEEEEEESTTSSEEEEE
T ss_pred C-----CC--CEEEEEEECCCCCEEEEE
Confidence 1 11 344555544445566653
No 57
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.76 E-value=0.67 Score=45.89 Aligned_cols=174 Identities=17% Similarity=0.278 Sum_probs=100.7
Q ss_pred ceEEEEECCCCc--EEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEE-e
Q 007111 14 DDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSV-V 88 (617)
Q Consensus 14 ~~v~~yd~~t~~--W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~-~ 88 (617)
..+++||+.+++ |..-... +. ....+..++.||+..+. ..++.+|..+.. |+. .
T Consensus 46 ~~l~~~d~~tG~~~W~~~~~~------------~~--~~~~~~~~~~v~v~~~~-------~~l~~~d~~tG~~~W~~~~ 104 (238)
T PF13360_consen 46 GNLYALDAKTGKVLWRFDLPG------------PI--SGAPVVDGGRVYVGTSD-------GSLYALDAKTGKVLWSIYL 104 (238)
T ss_dssp SEEEEEETTTSEEEEEEECSS------------CG--GSGEEEETTEEEEEETT-------SEEEEEETTTSCEEEEEEE
T ss_pred CEEEEEECCCCCEEEEeeccc------------cc--cceeeecccccccccce-------eeeEecccCCcceeeeecc
Confidence 579999987665 7554321 11 12246778999888632 279999988775 984 4
Q ss_pred eccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEeecCCCCCCCCc-------ccEEEEECC
Q 007111 89 EAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPRS-------NHVAALYDD 159 (617)
Q Consensus 89 ~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~-------~h~a~~~~~ 159 (617)
... +....+........++.+|+... ...++.+|+.+.+ |+.-- ..|..-. ..+..++.+
T Consensus 105 ~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 173 (238)
T PF13360_consen 105 TSS-PPAGVRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPV---GEPRGSSPISSFSDINGSPVISD 173 (238)
T ss_dssp -SS-CTCSTB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEES---STT-SS--EEEETTEEEEEECCT
T ss_pred ccc-cccccccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeec---CCCCCCcceeeecccccceEEEC
Confidence 321 11112344455555777777643 3568999999876 87642 2222111 112233333
Q ss_pred cEEEEEccCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCc-
Q 007111 160 KNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE- 236 (617)
Q Consensus 160 ~~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~- 236 (617)
..+|+..+... +..+|..++. |+.. .. . ........++.+|+.. .. ..++.+|+.+.+
T Consensus 174 ~~v~~~~~~g~------~~~~d~~tg~~~w~~~-~~-----~-~~~~~~~~~~~l~~~~-~~-----~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 174 GRVYVSSGDGR------VVAVDLATGEKLWSKP-IS-----G-IYSLPSVDGGTLYVTS-SD-----GRLYALDLKTGKV 234 (238)
T ss_dssp TEEEEECCTSS------EEEEETTTTEEEEEEC-SS-------ECECEECCCTEEEEEE-TT-----TEEEEEETTTTEE
T ss_pred CEEEEEcCCCe------EEEEECCCCCEEEEec-CC-----C-ccCCceeeCCEEEEEe-CC-----CEEEEEECCCCCE
Confidence 34888766542 6677999987 7433 22 1 1111344477888876 32 469999999874
Q ss_pred -EE
Q 007111 237 -WS 238 (617)
Q Consensus 237 -W~ 238 (617)
|+
T Consensus 235 ~W~ 237 (238)
T PF13360_consen 235 VWQ 237 (238)
T ss_dssp EEE
T ss_pred EeE
Confidence 64
No 58
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.49 E-value=0.17 Score=52.66 Aligned_cols=112 Identities=22% Similarity=0.294 Sum_probs=72.6
Q ss_pred CceEEEEEECCCCcEEEeeccCCCCCCcce--eEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecC--CCC
Q 007111 71 DRVSVWTFDTETECWSVVEAKGDIPVARSG--HTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT--GTG 145 (617)
Q Consensus 71 ~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~--~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~--g~~ 145 (617)
....+..||+.+.+|..+.. - -.+ .++... ++++|+.|-.+.++.....+-.||..+.+|+.+... ..+
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~---~---i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~i 87 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGN---G---ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSI 87 (281)
T ss_pred CCCEEEEEECCCCEeecCCC---C---ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccC
Confidence 46789999999999988863 1 222 233333 678888887665553467799999999999988531 235
Q ss_pred CCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeec
Q 007111 146 PSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 192 (617)
Q Consensus 146 P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~ 192 (617)
|.+....+....+...+++.|....+ ..-+..|| ..+|..+..
T Consensus 88 pgpv~a~~~~~~d~~~~~~aG~~~~g--~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 88 PGPVTALTFISNDGSNFWVAGRSANG--STFLMKYD--GSSWSSIGS 130 (281)
T ss_pred CCcEEEEEeeccCCceEEEeceecCC--CceEEEEc--CCceEeccc
Confidence 55543222222344457887776322 23466775 778998866
No 59
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.43 E-value=1.5 Score=47.15 Aligned_cols=173 Identities=16% Similarity=0.187 Sum_probs=93.4
Q ss_pred ceEEEEECCCCc--EEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEee
Q 007111 14 DDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVE 89 (617)
Q Consensus 14 ~~v~~yd~~t~~--W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~ 89 (617)
..++++|+.+++ |...... + ...+.+..++.+|+..+. ..++.+|+.+.+ |+...
T Consensus 115 g~l~ald~~tG~~~W~~~~~~------------~--~~~~p~v~~~~v~v~~~~-------g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 115 GEVIALDAEDGKELWRAKLSS------------E--VLSPPLVANGLVVVRTND-------GRLTALDAATGERLWTYSR 173 (377)
T ss_pred CEEEEEECCCCcEeeeeccCc------------e--eecCCEEECCEEEEECCC-------CeEEEEEcCCCceeeEEcc
Confidence 368999986554 8654321 0 112233457787775432 359999998764 87543
Q ss_pred ccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEeecCCCCCCCC--------cccEEEEECC
Q 007111 90 AKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPR--------SNHVAALYDD 159 (617)
Q Consensus 90 ~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R--------~~h~a~~~~~ 159 (617)
.. +....+...+.+..++.+| +|.. ...++.+|+.+.+ |+.-. ..|... ...+.++.++
T Consensus 174 ~~-~~~~~~~~~sp~~~~~~v~-~~~~------~g~v~ald~~tG~~~W~~~~---~~~~g~~~~~~~~~~~~~p~~~~~ 242 (377)
T TIGR03300 174 VT-PALTLRGSASPVIADGGVL-VGFA------GGKLVALDLQTGQPLWEQRV---ALPKGRTELERLVDVDGDPVVDGG 242 (377)
T ss_pred CC-CceeecCCCCCEEECCEEE-EECC------CCEEEEEEccCCCEeeeecc---ccCCCCCchhhhhccCCccEEECC
Confidence 11 1011122233445566554 4332 2358999998764 86431 111111 1122233444
Q ss_pred cEEEEEccCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCC--
Q 007111 160 KNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG-- 235 (617)
Q Consensus 160 ~~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~-- 235 (617)
. +|+.+. + ..++.||+.+++ |..-. + . ..+.+..++++|+.... ..++.+|..+.
T Consensus 243 ~-vy~~~~-~-----g~l~a~d~~tG~~~W~~~~-----~-~--~~~p~~~~~~vyv~~~~------G~l~~~d~~tG~~ 301 (377)
T TIGR03300 243 Q-VYAVSY-Q-----GRVAALDLRSGRVLWKRDA-----S-S--YQGPAVDDNRLYVTDAD------GVVVALDRRSGSE 301 (377)
T ss_pred E-EEEEEc-C-----CEEEEEECCCCcEEEeecc-----C-C--ccCceEeCCEEEEECCC------CeEEEEECCCCcE
Confidence 4 776543 2 259999997754 65431 1 1 12334568899987521 35889998765
Q ss_pred cEEE
Q 007111 236 EWSV 239 (617)
Q Consensus 236 ~W~~ 239 (617)
.|..
T Consensus 302 ~W~~ 305 (377)
T TIGR03300 302 LWKN 305 (377)
T ss_pred EEcc
Confidence 4765
No 60
>PRK04792 tolB translocation protein TolB; Provisional
Probab=96.42 E-value=2.1 Score=47.57 Aligned_cols=149 Identities=13% Similarity=0.139 Sum_probs=83.1
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCccc
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 152 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 152 (617)
..+|++|+.+.+-..+. ..+..-...+....+..|++....++ ..++|.+|+.+.+.+++... . .....
T Consensus 242 ~~L~~~dl~tg~~~~lt---~~~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~---~-~~~~~ 310 (448)
T PRK04792 242 AEIFVQDIYTQVREKVT---SFPGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRH---R-AIDTE 310 (448)
T ss_pred cEEEEEECCCCCeEEec---CCCCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccC---C-CCccc
Confidence 47999999988776664 22221112222223446666544333 25799999999998877421 1 11111
Q ss_pred EEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEEC
Q 007111 153 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDI 232 (617)
Q Consensus 153 ~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl 232 (617)
....-+++.|++.....+ ...+|.+|+.++.+..+...+.. . ...+....++.||+.+... ....++.+|+
T Consensus 311 p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g~~--~-~~~~~SpDG~~l~~~~~~~---g~~~I~~~dl 381 (448)
T PRK04792 311 PSWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRLTFEGEQ--N-LGGSITPDGRSMIMVNRTN---GKFNIARQDL 381 (448)
T ss_pred eEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEEecCCCC--C-cCeeECCCCCEEEEEEecC---CceEEEEEEC
Confidence 222335554555433322 25799999999999887532111 1 1112222244555554322 1246899999
Q ss_pred CCCcEEEee
Q 007111 233 LKGEWSVAI 241 (617)
Q Consensus 233 ~~~~W~~l~ 241 (617)
.+..+..+.
T Consensus 382 ~~g~~~~lt 390 (448)
T PRK04792 382 ETGAMQVLT 390 (448)
T ss_pred CCCCeEEcc
Confidence 998877764
No 61
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.39 E-value=1.2 Score=44.16 Aligned_cols=213 Identities=19% Similarity=0.254 Sum_probs=117.1
Q ss_pred ceEEEEECCCCc--EEEccccccCCCCCCCCCCCcccceE-EEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEe
Q 007111 14 DDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHS-LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVV 88 (617)
Q Consensus 14 ~~v~~yd~~t~~--W~~l~~~~~~~p~~~~~~~p~r~~hs-~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~ 88 (617)
..+.++|+.+++ |..--. .+.....+ .+..++++|+..+. ..++.||..+.+ |+.-
T Consensus 3 g~l~~~d~~tG~~~W~~~~~------------~~~~~~~~~~~~~~~~v~~~~~~-------~~l~~~d~~tG~~~W~~~ 63 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLG------------PGIGGPVATAVPDGGRVYVASGD-------GNLYALDAKTGKVLWRFD 63 (238)
T ss_dssp SEEEEEETTTTEEEEEEECS------------SSCSSEEETEEEETTEEEEEETT-------SEEEEEETTTSEEEEEEE
T ss_pred CEEEEEECCCCCEEEEEECC------------CCCCCccceEEEeCCEEEEEcCC-------CEEEEEECCCCCEEEEee
Confidence 357899987665 876321 01111121 34478899988432 379999998876 7655
Q ss_pred eccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEE-eecCCCCCC-CCcccEEEEECCcEEEE
Q 007111 89 EAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLP-LHCTGTGPS-PRSNHVAALYDDKNLLI 164 (617)
Q Consensus 89 ~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~-l~~~g~~P~-~R~~h~a~~~~~~~LyV 164 (617)
. +.. ........++.+|+..+ .+.++.||..+.+ |+. ... ..+. .+......+.++. +|+
T Consensus 64 ~-----~~~-~~~~~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~~~~-~~~ 127 (238)
T PF13360_consen 64 L-----PGP-ISGAPVVDGGRVYVGTS-------DGSLYALDAKTGKVLWSIYLTS--SPPAGVRSSSSPAVDGDR-LYV 127 (238)
T ss_dssp C-----SSC-GGSGEEEETTEEEEEET-------TSEEEEEETTTSCEEEEEEE-S--SCTCSTB--SEEEEETTE-EEE
T ss_pred c-----ccc-ccceeeecccccccccc-------eeeeEecccCCcceeeeecccc--ccccccccccCceEecCE-EEE
Confidence 3 111 11114677889988761 2379999988775 984 421 1112 2233334444444 555
Q ss_pred EccCCCCCCCCeEEEEECCCCc--EEEeecCCCCCC-----CCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCc-
Q 007111 165 FGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPS-----PRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE- 236 (617)
Q Consensus 165 ~GG~~~~~~~n~v~~yD~~t~~--W~~~~~~g~~P~-----~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~- 236 (617)
... + ..++.+|+.+++ |......+.... .......+..++.+|+..+... +..+|..+..
T Consensus 128 ~~~-~-----g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~------~~~~d~~tg~~ 195 (238)
T PF13360_consen 128 GTS-S-----GKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR------VVAVDLATGEK 195 (238)
T ss_dssp EET-C-----SEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS------EEEEETTTTEE
T ss_pred Eec-c-----CcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe------EEEEECCCCCE
Confidence 443 2 459999998765 665443211000 0111233334678888876432 5666999886
Q ss_pred -EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 237 -WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 237 -W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
|+.. ... ..+.... ..+.||+.. . ...++++|+.+.+
T Consensus 196 ~w~~~--~~~-------~~~~~~~---~~~~l~~~~-~----~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 196 LWSKP--ISG-------IYSLPSV---DGGTLYVTS-S----DGRLYALDLKTGK 233 (238)
T ss_dssp EEEEC--SS--------ECECEEC---CCTEEEEEE-T----TTEEEEEETTTTE
T ss_pred EEEec--CCC-------ccCCcee---eCCEEEEEe-C----CCEEEEEECCCCC
Confidence 8442 111 1111121 246666655 3 2479999998876
No 62
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.39 E-value=0.14 Score=55.04 Aligned_cols=120 Identities=18% Similarity=0.231 Sum_probs=76.8
Q ss_pred ECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCcc----CeEEEE-
Q 007111 55 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKL----NDLHMF- 129 (617)
Q Consensus 55 ~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~----~~v~~y- 129 (617)
.+++|+..++. ..+.+||+.+..-...| .++.+...-.++.+++.||++.......... ..++.+
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~ 144 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALV 144 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEec
Confidence 48899988654 23899999999888776 4555555557777899999998764432110 144555
Q ss_pred -EC--------CCCcEEEeecCCCCCCCCcc-------cEEEEECCcEEEE-EccCCCCCCCCeEEEEECCCCcEEEeec
Q 007111 130 -DL--------KSLTWLPLHCTGTGPSPRSN-------HVAALYDDKNLLI-FGGSSKSKTLNDLYSLDFETMIWTRIKI 192 (617)
Q Consensus 130 -D~--------~t~~W~~l~~~g~~P~~R~~-------h~a~~~~~~~LyV-~GG~~~~~~~n~v~~yD~~t~~W~~~~~ 192 (617)
++ ....|..++ +.|..+.. .+-+++++..|+| .-|.. ...|.||+.+.+|+.+..
T Consensus 145 ~~~~~~~~~~~~~w~W~~LP---~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 145 YRPPPDDPSPEESWSWRSLP---PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred cccccccccCCCcceEEcCC---CCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeeccc
Confidence 31 223578774 33433332 2334446666877 44432 238999999999999854
No 63
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.35 E-value=1.4 Score=44.58 Aligned_cols=186 Identities=13% Similarity=0.080 Sum_probs=87.9
Q ss_pred CEEEecCCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEEC
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDT 80 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~ 80 (617)
+|+.++.+ ..+.+||+.+++-...-. .....+ +.+....+..+|+.++. ...++.||+
T Consensus 3 ~~~s~~~d-----~~v~~~d~~t~~~~~~~~----------~~~~~~-~l~~~~dg~~l~~~~~~------~~~v~~~d~ 60 (300)
T TIGR03866 3 AYVSNEKD-----NTISVIDTATLEVTRTFP----------VGQRPR-GITLSKDGKLLYVCASD------SDTIQVIDL 60 (300)
T ss_pred EEEEecCC-----CEEEEEECCCCceEEEEE----------CCCCCC-ceEECCCCCEEEEEECC------CCeEEEEEC
Confidence 35556543 379999998776433221 001111 11111123457777653 236889999
Q ss_pred CCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-
Q 007111 81 ETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY- 157 (617)
Q Consensus 81 ~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~- 157 (617)
.+.+....-. ..+.. ..++.. ++.+|+.++. ...+.+||+.+..-... ++.....+.++..
T Consensus 61 ~~~~~~~~~~--~~~~~---~~~~~~~~g~~l~~~~~~------~~~l~~~d~~~~~~~~~-----~~~~~~~~~~~~~~ 124 (300)
T TIGR03866 61 ATGEVIGTLP--SGPDP---ELFALHPNGKILYIANED------DNLVTVIDIETRKVLAE-----IPVGVEPEGMAVSP 124 (300)
T ss_pred CCCcEEEecc--CCCCc---cEEEECCCCCEEEEEcCC------CCeEEEEECCCCeEEeE-----eeCCCCcceEEECC
Confidence 8876543211 11111 122222 3456665432 23589999987642211 1111111233433
Q ss_pred CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcE
Q 007111 158 DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEW 237 (617)
Q Consensus 158 ~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W 237 (617)
++. +++++..+. +.++.||..+..-......+. .++ +.....++..+++++... ..+..||+.+.+.
T Consensus 125 dg~-~l~~~~~~~----~~~~~~d~~~~~~~~~~~~~~--~~~--~~~~s~dg~~l~~~~~~~----~~v~i~d~~~~~~ 191 (300)
T TIGR03866 125 DGK-IVVNTSETT----NMAHFIDTKTYEIVDNVLVDQ--RPR--FAEFTADGKELWVSSEIG----GTVSVIDVATRKV 191 (300)
T ss_pred CCC-EEEEEecCC----CeEEEEeCCCCeEEEEEEcCC--Ccc--EEEECCCCCEEEEEcCCC----CEEEEEEcCccee
Confidence 455 555554432 246678887665433222111 111 222222455444444322 3588899887643
No 64
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.32 E-value=0.13 Score=55.57 Aligned_cols=147 Identities=16% Similarity=0.225 Sum_probs=84.6
Q ss_pred CCE-EEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcc-eeEEEEECCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKK-VLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARS-GHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~-lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~-~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
+|. .++++|.. .-+|.||+.+.+..++.....++..-. .+.+. .++.++++-|..+. ++++...|
T Consensus 268 ~G~~~i~~s~rr------ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVS-hd~~fia~~G~~G~------I~lLhakT 334 (514)
T KOG2055|consen 268 NGHSVIFTSGRR------KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVS-HDSNFIAIAGNNGH------IHLLHAKT 334 (514)
T ss_pred CCceEEEecccc------eEEEEeeccccccccccCCCCcccchhheeEec-CCCCeEEEcccCce------EEeehhhh
Confidence 444 77787762 359999999999988875433442211 22222 34456666665443 77777788
Q ss_pred CcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEE
Q 007111 134 LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKW 212 (617)
Q Consensus 134 ~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~-~~~~I 212 (617)
+.|..- -.++. +..-.+...+++.||+.||++ .||+||+.++........ ....++-+.|. .++.+
T Consensus 335 ~eli~s---~KieG-~v~~~~fsSdsk~l~~~~~~G------eV~v~nl~~~~~~~rf~D---~G~v~gts~~~S~ng~y 401 (514)
T KOG2055|consen 335 KELITS---FKIEG-VVSDFTFSSDSKELLASGGTG------EVYVWNLRQNSCLHRFVD---DGSVHGTSLCISLNGSY 401 (514)
T ss_pred hhhhhe---eeecc-EEeeEEEecCCcEEEEEcCCc------eEEEEecCCcceEEEEee---cCccceeeeeecCCCce
Confidence 888632 12222 222222234566799999975 599999998866554332 22334444443 36665
Q ss_pred EEEecCCCCCccceEEEEECC
Q 007111 213 YIAGGGSRKKRHAETLIFDIL 233 (617)
Q Consensus 213 yI~GG~s~~~~~~~v~~yDl~ 233 (617)
+.+|-.++ -+-+||..
T Consensus 402 lA~GS~~G-----iVNIYd~~ 417 (514)
T KOG2055|consen 402 LATGSDSG-----IVNIYDGN 417 (514)
T ss_pred EEeccCcc-----eEEEeccc
Confidence 55554332 25577643
No 65
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.27 E-value=0.09 Score=56.85 Aligned_cols=156 Identities=19% Similarity=0.159 Sum_probs=90.0
Q ss_pred CEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCccc-EEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCC
Q 007111 108 SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH-VAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETM 185 (617)
Q Consensus 108 ~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h-~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~ 185 (617)
-.+.+.+|.+.. -.+|..|-.+|. .+. ++-..++-- +++.. ++...++++|+.. -+|.||+.+.
T Consensus 225 ~plllvaG~d~~----lrifqvDGk~N~--~lq---S~~l~~fPi~~a~f~p~G~~~i~~s~rrk-----y~ysyDle~a 290 (514)
T KOG2055|consen 225 APLLLVAGLDGT----LRIFQVDGKVNP--KLQ---SIHLEKFPIQKAEFAPNGHSVIFTSGRRK-----YLYSYDLETA 290 (514)
T ss_pred CceEEEecCCCc----EEEEEecCccCh--hhe---eeeeccCccceeeecCCCceEEEecccce-----EEEEeecccc
Confidence 478888888765 224444444443 332 221111111 23333 3333677777753 3899999999
Q ss_pred cEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCc
Q 007111 186 IWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKD 265 (617)
Q Consensus 186 ~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~ 265 (617)
+.+++..+.-.+.+-...--+..++.++++-|..+ .++.+...++.|-.--..+ + ..+...+. ++..
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G-----~I~lLhakT~eli~s~Kie-----G--~v~~~~fs-Sdsk 357 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG-----HIHLLHAKTKELITSFKIE-----G--VVSDFTFS-SDSK 357 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCCeEEEcccCc-----eEEeehhhhhhhhheeeec-----c--EEeeEEEe-cCCc
Confidence 99988775444422211122333555666666553 4778888888886633211 1 13333343 3457
Q ss_pred EEEEEcCCCCCCCCeEEEEECCCCcccccc
Q 007111 266 FLVAFGGIKKEPSNQVEVLSIEKNESSMGR 295 (617)
Q Consensus 266 ~L~I~GG~~~~~~~dV~vyd~~~~~W~~~w 295 (617)
.|++.||++ .||++|+..+....+|
T Consensus 358 ~l~~~~~~G-----eV~v~nl~~~~~~~rf 382 (514)
T KOG2055|consen 358 ELLASGGTG-----EVYVWNLRQNSCLHRF 382 (514)
T ss_pred EEEEEcCCc-----eEEEEecCCcceEEEE
Confidence 889999875 8999999998754444
No 66
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.23 E-value=0.022 Score=72.06 Aligned_cols=135 Identities=31% Similarity=0.376 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhH-----------
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ----------- 538 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~q----------- 538 (617)
.-.+...++.+....+..|+-+.....+.+-....-++.-.-.+++|++....|+|.|+++++.+++|.
T Consensus 1622 ~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~ 1701 (1930)
T KOG0161|consen 1622 HANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELA 1701 (1930)
T ss_pred HHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344455556666666666666666666666666666666666778999999999999999999998876
Q ss_pred Hhhhccc---ccccCCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhcccccc--------------------------
Q 007111 539 EEANSLS---NIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQ-------------------------- 589 (617)
Q Consensus 539 e~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 589 (617)
|..|.+. +.--+++.+||.||+-|.+-|+++++|++. |.||+|--|
T Consensus 1702 e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~-----~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~~ 1776 (1930)
T KOG0161|consen 1702 ERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRA-----AEERAKKAQADAAKLAEELRKEQETSQKLERLKKS 1776 (1930)
T ss_pred HHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3333332 445678899999999999999999999874 444444333
Q ss_pred chhhHHHHHHHHhhhhccCC
Q 007111 590 LQVEVFHLKQRLQSLENRAP 609 (617)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~ 609 (617)
|+.+|-.|+.||+-+|+.+-
T Consensus 1777 LE~~~kdLq~rL~e~E~~a~ 1796 (1930)
T KOG0161|consen 1777 LERQVKDLQLRLDEAEQAAL 1796 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 34578889999999998764
No 67
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.19 E-value=0.15 Score=53.10 Aligned_cols=124 Identities=16% Similarity=0.255 Sum_probs=74.1
Q ss_pred EEEeecCCCCC-ccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCC-CCCeEEEEECCCCcEE
Q 007111 111 ILFGGEDGKRR-KLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK-TLNDLYSLDFETMIWT 188 (617)
Q Consensus 111 Yv~GG~~~~~~-~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~-~~n~v~~yD~~t~~W~ 188 (617)
||-|-++..+. .+..+..||+.+.+|..+. .--.+ .-..+...++..+|+.|-..... ....+..||..+.+|+
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g---~~i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~ 77 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPG---NGISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS 77 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCC---CCceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee
Confidence 44444444442 4788999999999999873 22111 12233344555577777654333 4567999999999999
Q ss_pred EeecC--CCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeec
Q 007111 189 RIKIR--GFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 242 (617)
Q Consensus 189 ~~~~~--g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~ 242 (617)
.+... ...|.|......... .+.+++.|..... ..-+..| +..+|..+..
T Consensus 78 ~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g--~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 78 SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANG--STFLMKY--DGSSWSSIGS 130 (281)
T ss_pred ecCCcccccCCCcEEEEEeeccCCceEEEeceecCC--CceEEEE--cCCceEeccc
Confidence 88772 234444322222222 3467777765221 2334455 5778999864
No 68
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.75 E-value=4.1 Score=46.40 Aligned_cols=217 Identities=15% Similarity=0.123 Sum_probs=110.6
Q ss_pred EEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEeeccC-CCCC----CcceeEEEEECCEEEEEeecCCCCCccC
Q 007111 52 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKG-DIPV----ARSGHTVVRASSVLILFGGEDGKRRKLN 124 (617)
Q Consensus 52 ~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g-~~P~----~R~~~s~~~~~~~IYv~GG~~~~~~~~~ 124 (617)
-++.++.||+.... ..++.+|..+.+ |+.-.... .... .......++.+++||+.. ...
T Consensus 65 Pvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t-------~dg 130 (527)
T TIGR03075 65 PLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT-------LDA 130 (527)
T ss_pred CEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc-------CCC
Confidence 34568999986542 258999988764 87654210 0100 011223456677887632 124
Q ss_pred eEEEEECCCCc--EEEeecCCCCCCC-CcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCc--EEEeecCCCC---
Q 007111 125 DLHMFDLKSLT--WLPLHCTGTGPSP-RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFH--- 196 (617)
Q Consensus 125 ~v~~yD~~t~~--W~~l~~~g~~P~~-R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~~~~g~~--- 196 (617)
.++.+|..+.+ |+.-. ...... ....+-+++++. +|+-...........++.||.++++ |+.....+..
T Consensus 131 ~l~ALDa~TGk~~W~~~~--~~~~~~~~~tssP~v~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~ 207 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKN--GDYKAGYTITAAPLVVKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYL 207 (527)
T ss_pred EEEEEECCCCCEEeeccc--ccccccccccCCcEEECCE-EEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccc
Confidence 68999998876 87532 111111 111233445665 5553221112234568999998764 7644331110
Q ss_pred ----------C---------CCC----cceEEEEE--CCEEEEEecC----CC------CCccceEEEEECCCCc--EEE
Q 007111 197 ----------P---------SPR----AGCCGVLC--GTKWYIAGGG----SR------KKRHAETLIFDILKGE--WSV 239 (617)
Q Consensus 197 ----------P---------~~R----~~ha~v~~--~~~IyI~GG~----s~------~~~~~~v~~yDl~~~~--W~~ 239 (617)
| -.+ ....+++. .+.||+--|. .. +...+.+..+|+++.+ |..
T Consensus 208 ~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~ 287 (527)
T TIGR03075 208 DKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHY 287 (527)
T ss_pred cccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEee
Confidence 0 001 11122332 3567765443 11 2345789999999864 876
Q ss_pred eecCCCCCCCCCcceEEEEEee--cCC-cEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 240 AITSPSSSVTSNKGFTLVLVQH--KEK-DFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 240 l~~~~~~~p~~r~~~s~v~v~~--~~~-~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
... +...-..-.....+++.. +++ ..+++.+..+| .+|++|..+.+
T Consensus 288 Q~~-~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G----~~~vlDr~tG~ 336 (527)
T TIGR03075 288 QTT-PHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNG----FFYVLDRTNGK 336 (527)
T ss_pred eCC-CCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCc----eEEEEECCCCc
Confidence 542 211111111122333432 221 24777777654 68999988765
No 69
>PTZ00421 coronin; Provisional
Probab=95.45 E-value=6 Score=44.69 Aligned_cols=45 Identities=24% Similarity=0.182 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHH
Q 007111 465 SSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQE 512 (617)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 512 (617)
+-|......++++|.. .|..|-++..+.+|+.+|+-+.+++..++
T Consensus 445 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (493)
T PTZ00421 445 EGILDERLGRLQALSE---KLRTQHEEIKRCREALQKKESIVMETLEK 489 (493)
T ss_pred hhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666554 45566667777778887777777655443
No 70
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.31 E-value=5.7 Score=43.60 Aligned_cols=148 Identities=11% Similarity=0.073 Sum_probs=80.6
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCccc
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 152 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 152 (617)
..+|++|+.++.-+.+.. .+..-........+.+|++....++ ..++|++|+.+..++.+.. .+ .....
T Consensus 223 ~~l~~~~l~~g~~~~l~~---~~g~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~---~~-~~~~~ 291 (430)
T PRK00178 223 PRIFVQNLDTGRREQITN---FEGLNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTN---HP-AIDTE 291 (430)
T ss_pred CEEEEEECCCCCEEEccC---CCCCcCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEccc---CC-CCcCC
Confidence 479999999988777652 2211111111112345554432222 2579999999999887731 11 11111
Q ss_pred EEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc-eEEEEECCEEEEEecCCCCCccceEEEEE
Q 007111 153 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCGVLCGTKWYIAGGGSRKKRHAETLIFD 231 (617)
Q Consensus 153 ~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~-ha~v~~~~~IyI~GG~s~~~~~~~v~~yD 231 (617)
....-+++.|++.....+ ...+|.+|+.++.+..+...+ .... .+....++.|++.....+ ...++++|
T Consensus 292 ~~~spDg~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~----~~~~~~~~Spdg~~i~~~~~~~~---~~~l~~~d 361 (430)
T PRK00178 292 PFWGKDGRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVG----NYNARPRLSADGKTLVMVHRQDG---NFHVAAQD 361 (430)
T ss_pred eEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC----CCccceEECCCCCEEEEEEccCC---ceEEEEEE
Confidence 222235554555432222 247999999999888775421 1111 111222455655543222 23699999
Q ss_pred CCCCcEEEee
Q 007111 232 ILKGEWSVAI 241 (617)
Q Consensus 232 l~~~~W~~l~ 241 (617)
+.+..++.+.
T Consensus 362 l~tg~~~~lt 371 (430)
T PRK00178 362 LQRGSVRILT 371 (430)
T ss_pred CCCCCEEEcc
Confidence 9998887765
No 71
>PRK05137 tolB translocation protein TolB; Provisional
Probab=95.00 E-value=7.2 Score=43.06 Aligned_cols=188 Identities=13% Similarity=0.056 Sum_probs=95.4
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCccc
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 152 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 152 (617)
..+|++|+.+.....+. ..+..-........+.+|++....++ ..++|.+|..+....++.. .+. ....
T Consensus 226 ~~i~~~dl~~g~~~~l~---~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~---~~~-~~~~ 294 (435)
T PRK05137 226 PRVYLLDLETGQRELVG---NFPGMTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTD---SPA-IDTS 294 (435)
T ss_pred CEEEEEECCCCcEEEee---cCCCcccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccC---CCC-ccCc
Confidence 47999999998887775 22322222222222345655543333 3579999999988877631 111 1112
Q ss_pred EEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc-eEEEEECCEEEEEecCCCCCccceEEEEE
Q 007111 153 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCGVLCGTKWYIAGGGSRKKRHAETLIFD 231 (617)
Q Consensus 153 ~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~-ha~v~~~~~IyI~GG~s~~~~~~~v~~yD 231 (617)
....-+++.|++.....+ ...+|++|..++..+.+... ..... ......++.|++.....+ ...++++|
T Consensus 295 ~~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~~~~~---~~~i~~~d 364 (435)
T PRK05137 295 PSYSPDGSQIVFESDRSG---SPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTKQGGG---QFSIGVMK 364 (435)
T ss_pred eeEcCCCCEEEEEECCCC---CCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEEcCCC---ceEEEEEE
Confidence 222335554543322222 25799999988877776532 11111 111222445555432211 24689999
Q ss_pred CCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCC-CCeEEEEECCCCc
Q 007111 232 ILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNE 290 (617)
Q Consensus 232 l~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~-~~dV~vyd~~~~~ 290 (617)
+....+..+... . ......+..+ ...|+......+.. ...++++|+....
T Consensus 365 ~~~~~~~~lt~~--~------~~~~p~~spD-G~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 365 PDGSGERILTSG--F------LVEGPTWAPN-GRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred CCCCceEeccCC--C------CCCCCeECCC-CCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 877666554321 0 1112223322 23444333322221 2478888886654
No 72
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.00 E-value=0.15 Score=57.23 Aligned_cols=38 Identities=34% Similarity=0.311 Sum_probs=27.3
Q ss_pred HhhhhhccchhhhccccccchhhHHHHHHHHhhhhccC
Q 007111 571 KELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLENRA 608 (617)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (617)
++|..+---+.-+..+++++|+|+..||..|+.++.+.
T Consensus 262 ~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~l 299 (546)
T PF07888_consen 262 QRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQL 299 (546)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33443333334456678999999999999999998764
No 73
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.80 E-value=8.9 Score=43.16 Aligned_cols=216 Identities=14% Similarity=0.120 Sum_probs=104.5
Q ss_pred EEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEeeccCCCC-CC-cceeEEEEEC-CEEEEEeecCCCCCccCeE
Q 007111 52 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIP-VA-RSGHTVVRAS-SVLILFGGEDGKRRKLNDL 126 (617)
Q Consensus 52 ~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~P-~~-R~~~s~~~~~-~~IYv~GG~~~~~~~~~~v 126 (617)
-++.+++||+.... ..++.+|..+.+ |+.-......+ .+ -.....+..+ +.||+.. ....+
T Consensus 57 Pvv~~g~vy~~~~~-------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~-------~~g~v 122 (488)
T cd00216 57 PLVVDGDMYFTTSH-------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGT-------FDGRL 122 (488)
T ss_pred CEEECCEEEEeCCC-------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEec-------CCCeE
Confidence 35668999987542 358999988765 87643211000 00 0111233445 7777642 12468
Q ss_pred EEEECCCCc--EEEeecCCCC-CCCCcccEEEEECCcEEEEEccCCCC----CCCCeEEEEECCCC--cEEEeecCCCC-
Q 007111 127 HMFDLKSLT--WLPLHCTGTG-PSPRSNHVAALYDDKNLLIFGGSSKS----KTLNDLYSLDFETM--IWTRIKIRGFH- 196 (617)
Q Consensus 127 ~~yD~~t~~--W~~l~~~g~~-P~~R~~h~a~~~~~~~LyV~GG~~~~----~~~n~v~~yD~~t~--~W~~~~~~g~~- 196 (617)
+.+|..+.+ |+.-. .+.. +......+.++.+ . ++++|..+.. .....++.||..|+ .|..-...+.+
T Consensus 123 ~AlD~~TG~~~W~~~~-~~~~~~~~~i~ssP~v~~-~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~ 199 (488)
T cd00216 123 VALDAETGKQVWKFGN-NDQVPPGYTMTGAPTIVK-K-LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPN 199 (488)
T ss_pred EEEECCCCCEeeeecC-CCCcCcceEecCCCEEEC-C-EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcC
Confidence 999998765 88542 1110 0000122334444 4 3445533221 22457999999765 48754321111
Q ss_pred --CC------------CCcceEEEEE--CCEEEEEecCC------------CCCccceEEEEECCCC--cEEEeecCCCC
Q 007111 197 --PS------------PRAGCCGVLC--GTKWYIAGGGS------------RKKRHAETLIFDILKG--EWSVAITSPSS 246 (617)
Q Consensus 197 --P~------------~R~~ha~v~~--~~~IyI~GG~s------------~~~~~~~v~~yDl~~~--~W~~l~~~~~~ 246 (617)
|. +....+.++. ++.+|+-.|.. .+...+.++.+|+.+. .|+.-...+ .
T Consensus 200 ~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~-~ 278 (488)
T cd00216 200 AFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPH-D 278 (488)
T ss_pred CCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCC-C
Confidence 10 0011122222 46666654321 1123357999999876 488642111 0
Q ss_pred CCCCCcceEE-EEEe---ecCC-cEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 247 SVTSNKGFTL-VLVQ---HKEK-DFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 247 ~p~~r~~~s~-v~v~---~~~~-~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.. ....++. ++.. ..+. ..++++|..++ .++.+|+.+.+
T Consensus 279 ~~-~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G----~l~ald~~tG~ 322 (488)
T cd00216 279 LW-DYDGPNQPSLADIKPKDGKPVPAIVHAPKNG----FFYVLDRTTGK 322 (488)
T ss_pred Cc-ccccCCCCeEEeccccCCCeeEEEEEECCCc----eEEEEECCCCc
Confidence 00 0011111 1111 1111 12455665543 58999998876
No 74
>PRK05137 tolB translocation protein TolB; Provisional
Probab=94.71 E-value=8 Score=42.69 Aligned_cols=194 Identities=7% Similarity=-0.038 Sum_probs=95.7
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 93 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~ 93 (617)
..++++|+.+.....+... +. .....+....|.+|++.....+ ..++|.+|+.+.....+..
T Consensus 226 ~~i~~~dl~~g~~~~l~~~----------~g-~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~--- 287 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNF----------PG-MTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTD--- 287 (435)
T ss_pred CEEEEEECCCCcEEEeecC----------CC-cccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccC---
Confidence 4688999988877766541 11 0111111122345544433211 2479999999888776652
Q ss_pred CCCCcceeEEEEECC-EEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCC
Q 007111 94 IPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK 172 (617)
Q Consensus 94 ~P~~R~~~s~~~~~~-~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~ 172 (617)
.+..-.. ....-++ .|++.....+ ...+|++|..+...+.+.. ....+......-+++.|++... ...
T Consensus 288 ~~~~~~~-~~~spDG~~i~f~s~~~g----~~~Iy~~d~~g~~~~~lt~----~~~~~~~~~~SpdG~~ia~~~~-~~~- 356 (435)
T PRK05137 288 SPAIDTS-PSYSPDGSQIVFESDRSG----SPQLYVMNADGSNPRRISF----GGGRYSTPVWSPRGDLIAFTKQ-GGG- 356 (435)
T ss_pred CCCccCc-eeEcCCCCEEEEEECCCC----CCeEEEEECCCCCeEEeec----CCCcccCeEECCCCCEEEEEEc-CCC-
Confidence 1211111 1112234 4544332222 2579999998888877741 1122222233335664544432 211
Q ss_pred CCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEee
Q 007111 173 TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 241 (617)
Q Consensus 173 ~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~ 241 (617)
...++.+|+.++....+... . .-...+....+..|++.....+......+|.+|+....-..+.
T Consensus 357 -~~~i~~~d~~~~~~~~lt~~---~-~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 357 -QFSIGVMKPDGSGERILTSG---F-LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred -ceEEEEEECCCCceEeccCC---C-CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 24689999877665544321 1 1111122222334444432221111246899998776655543
No 75
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.66 E-value=8 Score=41.95 Aligned_cols=148 Identities=16% Similarity=0.114 Sum_probs=80.5
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCccc
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 152 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 152 (617)
..++++|+.++....+. ..+......+....+..|++....++ ..++|.+|+.+.....+... +.. ...
T Consensus 214 ~~i~v~d~~~g~~~~~~---~~~~~~~~~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~---~~~-~~~ 282 (417)
T TIGR02800 214 PEIYVQDLATGQREKVA---SFPGMNGAPAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNG---PGI-DTE 282 (417)
T ss_pred cEEEEEECCCCCEEEee---cCCCCccceEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCC---CCC-CCC
Confidence 57999999988766654 22222222121112345665543322 25799999998888777421 111 111
Q ss_pred EEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEE
Q 007111 153 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFD 231 (617)
Q Consensus 153 ~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yD 231 (617)
....-+++.|++.....+ ...+|.+|..++.+..+...+ ......+.. +++.+++..... ....++.+|
T Consensus 283 ~~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~--~~~~i~~~d 352 (417)
T TIGR02800 283 PSWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVHREG--GGFNIAVMD 352 (417)
T ss_pred EEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEEccC--CceEEEEEe
Confidence 122235554554433322 247999999988887765431 111222222 455555544322 234689999
Q ss_pred CCCCcEEEee
Q 007111 232 ILKGEWSVAI 241 (617)
Q Consensus 232 l~~~~W~~l~ 241 (617)
+.+..+..+.
T Consensus 353 ~~~~~~~~l~ 362 (417)
T TIGR02800 353 LDGGGERVLT 362 (417)
T ss_pred CCCCCeEEcc
Confidence 9887776654
No 76
>PRK04922 tolB translocation protein TolB; Provisional
Probab=94.62 E-value=8.9 Score=42.32 Aligned_cols=149 Identities=15% Similarity=0.113 Sum_probs=80.7
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCccc
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 152 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 152 (617)
..+|++|+.++....+. ..+..-........+.+|++....+++ .++|++|+.+....++... + .....
T Consensus 228 ~~l~~~dl~~g~~~~l~---~~~g~~~~~~~SpDG~~l~~~~s~~g~----~~Iy~~d~~~g~~~~lt~~---~-~~~~~ 296 (433)
T PRK04922 228 SAIYVQDLATGQRELVA---SFRGINGAPSFSPDGRRLALTLSRDGN----PEIYVMDLGSRQLTRLTNH---F-GIDTE 296 (433)
T ss_pred cEEEEEECCCCCEEEec---cCCCCccCceECCCCCEEEEEEeCCCC----ceEEEEECCCCCeEECccC---C-CCccc
Confidence 47999999988877665 222211111111223456554433332 5799999999887766311 1 11111
Q ss_pred EEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEEC
Q 007111 153 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDI 232 (617)
Q Consensus 153 ~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl 232 (617)
....-+++.|++.....+ ...+|.+|..++.+..+...+. .....+....++.|++..+..+ ...++++|+
T Consensus 297 ~~~spDG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~g~---~~~~~~~SpDG~~Ia~~~~~~~---~~~I~v~d~ 367 (433)
T PRK04922 297 PTWAPDGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQGN---YNARASVSPDGKKIAMVHGSGG---QYRIAVMDL 367 (433)
T ss_pred eEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEeecCCC---CccCEEECCCCCEEEEEECCCC---ceeEEEEEC
Confidence 222224554444433322 2479999998888887754311 1111122223556666544221 136899999
Q ss_pred CCCcEEEee
Q 007111 233 LKGEWSVAI 241 (617)
Q Consensus 233 ~~~~W~~l~ 241 (617)
.+..+..+.
T Consensus 368 ~~g~~~~Lt 376 (433)
T PRK04922 368 STGSVRTLT 376 (433)
T ss_pred CCCCeEECC
Confidence 888887664
No 77
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=94.56 E-value=4.9 Score=39.05 Aligned_cols=189 Identities=12% Similarity=0.107 Sum_probs=85.5
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEEC-CEEEEEeecCCCCCccCeEEEEECCCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDLHMFDLKSL 134 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~-~~IYv~GG~~~~~~~~~~v~~yD~~t~ 134 (617)
++..+++|+.+ ..+.+||..+......- .... ..-.++.... +.+++.|+.+ ..+.+||+.+.
T Consensus 62 ~~~~l~~~~~~------~~i~i~~~~~~~~~~~~---~~~~-~~i~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~ 125 (289)
T cd00200 62 DGTYLASGSSD------KTIRLWDLETGECVRTL---TGHT-SYVSSVAFSPDGRILSSSSRD------KTIKVWDVETG 125 (289)
T ss_pred CCCEEEEEcCC------CeEEEEEcCcccceEEE---eccC-CcEEEEEEcCCCCEEEEecCC------CeEEEEECCCc
Confidence 34466666642 35888888775322211 0011 1112222222 3566665522 35889998865
Q ss_pred cEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEE
Q 007111 135 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWY 213 (617)
Q Consensus 135 ~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~Iy 213 (617)
.-...- . .....-.++....+..+++.|+.++ .+..||+.+..-...... ....-.++... ++..+
T Consensus 126 ~~~~~~---~-~~~~~i~~~~~~~~~~~l~~~~~~~-----~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l 192 (289)
T cd00200 126 KCLTTL---R-GHTDWVNSVAFSPDGTFVASSSQDG-----TIKLWDLRTGKCVATLTG----HTGEVNSVAFSPDGEKL 192 (289)
T ss_pred EEEEEe---c-cCCCcEEEEEEcCcCCEEEEEcCCC-----cEEEEEccccccceeEec----CccccceEEECCCcCEE
Confidence 433221 1 1111112333333342444444243 488999875432222111 11112233333 34355
Q ss_pred EEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 214 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 214 I~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
++++.. ..+.+||+........- . . .......+.+.. .+.+++.|+.+ ..+.+||+.+..
T Consensus 193 ~~~~~~-----~~i~i~d~~~~~~~~~~--~---~-~~~~i~~~~~~~--~~~~~~~~~~~----~~i~i~~~~~~~ 252 (289)
T cd00200 193 LSSSSD-----GTIKLWDLSTGKCLGTL--R---G-HENGVNSVAFSP--DGYLLASGSED----GTIRVWDLRTGE 252 (289)
T ss_pred EEecCC-----CcEEEEECCCCceecch--h---h-cCCceEEEEEcC--CCcEEEEEcCC----CcEEEEEcCCce
Confidence 555543 35889998764433221 0 0 111222233322 25566666533 257888876543
No 78
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=94.53 E-value=1.2 Score=47.95 Aligned_cols=118 Identities=16% Similarity=0.170 Sum_probs=75.4
Q ss_pred ECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCC-------CCeEE
Q 007111 106 ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKT-------LNDLY 178 (617)
Q Consensus 106 ~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~-------~n~v~ 178 (617)
.+++|+..++. ....+||..+..-...+ .++.+.....++.++++ ||++........ .-++.
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~-LY~m~~~~~~~~~~~~~~~~FE~l 143 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDK-LYAMDRSPFPEPAGRPDFPCFEAL 143 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCe-EEEeeccCccccccCccceeEEEe
Confidence 47888888654 23789999998877553 46666666677788999 999987743211 22334
Q ss_pred EEE--------CCCCcEEEeecCCCCCCCCc-------ceEEEEE-CCEEEE-EecCCCCCccceEEEEECCCCcEEEee
Q 007111 179 SLD--------FETMIWTRIKIRGFHPSPRA-------GCCGVLC-GTKWYI-AGGGSRKKRHAETLIFDILKGEWSVAI 241 (617)
Q Consensus 179 ~yD--------~~t~~W~~~~~~g~~P~~R~-------~ha~v~~-~~~IyI-~GG~s~~~~~~~v~~yDl~~~~W~~l~ 241 (617)
.|+ .....|..+++ +|..+. -.+.+++ +.+||| +-|.. .-+|.||..+.+|+.+.
T Consensus 144 ~~~~~~~~~~~~~~w~W~~LP~---PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 144 VYRPPPDDPSPEESWSWRSLPP---PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHG 215 (342)
T ss_pred ccccccccccCCCcceEEcCCC---CCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeecc
Confidence 444 23446776644 233222 2334445 778888 44432 23899999999999986
Q ss_pred c
Q 007111 242 T 242 (617)
Q Consensus 242 ~ 242 (617)
.
T Consensus 216 d 216 (342)
T PF07893_consen 216 D 216 (342)
T ss_pred c
Confidence 4
No 79
>PRK00178 tolB translocation protein TolB; Provisional
Probab=94.52 E-value=9.1 Score=42.01 Aligned_cols=145 Identities=10% Similarity=0.038 Sum_probs=76.5
Q ss_pred CeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcce
Q 007111 124 NDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGC 203 (617)
Q Consensus 124 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~h 203 (617)
..+|++|+.+..-..+. ..+. ........-+++.|++....++ ..++|+||+.++.+..+... +..-...
T Consensus 223 ~~l~~~~l~~g~~~~l~---~~~g-~~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~---~~~~~~~ 292 (430)
T PRK00178 223 PRIFVQNLDTGRREQIT---NFEG-LNGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTNH---PAIDTEP 292 (430)
T ss_pred CEEEEEECCCCCEEEcc---CCCC-CcCCeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEcccC---CCCcCCe
Confidence 57999999998887763 1111 1111222224554544322222 15799999999988876542 1111111
Q ss_pred EEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEE
Q 007111 204 CGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEV 283 (617)
Q Consensus 204 a~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~v 283 (617)
.....+..||+.....+ ...+|.+|+.+..+..+.... . ......+..+ ...|+.....++ ...+++
T Consensus 293 ~~spDg~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~------~-~~~~~~~Spd-g~~i~~~~~~~~--~~~l~~ 359 (430)
T PRK00178 293 FWGKDGRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVG------N-YNARPRLSAD-GKTLVMVHRQDG--NFHVAA 359 (430)
T ss_pred EECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC------C-CccceEECCC-CCEEEEEEccCC--ceEEEE
Confidence 11112445665543222 246999999888887764211 1 1122233322 345554443322 336899
Q ss_pred EECCCCcc
Q 007111 284 LSIEKNES 291 (617)
Q Consensus 284 yd~~~~~W 291 (617)
+|+.+.++
T Consensus 360 ~dl~tg~~ 367 (430)
T PRK00178 360 QDLQRGSV 367 (430)
T ss_pred EECCCCCE
Confidence 99887654
No 80
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.28 E-value=10 Score=42.17 Aligned_cols=149 Identities=15% Similarity=0.142 Sum_probs=78.7
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCccc-ceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACR-GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~-~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..++++|+.+.+-..+... +... ..+....+..|++....++ ...+|.+|+.++..+.+...
T Consensus 242 ~~L~~~dl~tg~~~~lt~~------------~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~- 304 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSF------------PGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRH- 304 (448)
T ss_pred cEEEEEECCCCCeEEecCC------------CCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccC-
Confidence 3577778777665555431 1111 1112122445655533211 25799999999988777531
Q ss_pred CCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCC
Q 007111 93 DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK 172 (617)
Q Consensus 93 ~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~ 172 (617)
...-...+....+..|++.....+ ...+|.+|+.+.+++.+...+. ........-+++.|++.+.. ..
T Consensus 305 --~~~~~~p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g~----~~~~~~~SpDG~~l~~~~~~-~g- 372 (448)
T PRK04792 305 --RAIDTEPSWHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEGE----QNLGGSITPDGRSMIMVNRT-NG- 372 (448)
T ss_pred --CCCccceEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEecCCC----CCcCeeECCCCCEEEEEEec-CC-
Confidence 111111111112335555443322 2579999999999988742211 11112233356645554332 22
Q ss_pred CCCeEEEEECCCCcEEEeec
Q 007111 173 TLNDLYSLDFETMIWTRIKI 192 (617)
Q Consensus 173 ~~n~v~~yD~~t~~W~~~~~ 192 (617)
...++.+|+.++....+..
T Consensus 373 -~~~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 373 -KFNIARQDLETGAMQVLTS 391 (448)
T ss_pred -ceEEEEEECCCCCeEEccC
Confidence 2469999999988876643
No 81
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.21 E-value=12 Score=42.14 Aligned_cols=204 Identities=14% Similarity=0.091 Sum_probs=95.4
Q ss_pred ceEEEEECCCCc--EEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCC---CCceEEEEEECCCCc--EE
Q 007111 14 DDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG---SDRVSVWTFDTETEC--WS 86 (617)
Q Consensus 14 ~~v~~yd~~t~~--W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~---~~~~~v~~yd~~t~~--W~ 86 (617)
..++++|..+.+ |..-.... .........+.+..++.+|+ |...... .....++.||..+.+ |+
T Consensus 120 g~v~AlD~~TG~~~W~~~~~~~--------~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 120 GRLVALDAETGKQVWKFGNNDQ--------VPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEEECCCCCEeeeecCCCC--------cCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeE
Confidence 468999987654 87654310 00000011233445666664 4221111 123479999998775 86
Q ss_pred EeeccCCCCCCc---------------ceeEEEE--ECCEEEEEeecCC-----------CCCccCeEEEEECCCCc--E
Q 007111 87 VVEAKGDIPVAR---------------SGHTVVR--ASSVLILFGGEDG-----------KRRKLNDLHMFDLKSLT--W 136 (617)
Q Consensus 87 ~~~~~g~~P~~R---------------~~~s~~~--~~~~IYv~GG~~~-----------~~~~~~~v~~yD~~t~~--W 136 (617)
.-.........+ ...+.+. .++.+|+-.|-.. .....+.++.+|..+.+ |
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W 270 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW 270 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence 543211110001 0011222 2456666544221 11235689999999875 9
Q ss_pred EEeecCCCCCCCCccc--EEEE---ECCc--EEEEEccCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCCcceEEEE
Q 007111 137 LPLHCTGTGPSPRSNH--VAAL---YDDK--NLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVL 207 (617)
Q Consensus 137 ~~l~~~g~~P~~R~~h--~a~~---~~~~--~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~~~~g~~P~~R~~ha~v~ 207 (617)
+.-....+...-+... ...- +++. .++++|..++ .++.+|..+++ |+.-... ..++.
T Consensus 271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G-----~l~ald~~tG~~~W~~~~~~---------~~~~~ 336 (488)
T cd00216 271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNG-----FFYVLDRTTGKLISARPEVE---------QPMAY 336 (488)
T ss_pred EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCc-----eEEEEECCCCcEeeEeEeec---------ccccc
Confidence 8532111110001111 1111 2222 2445555443 39999998775 7643221 00111
Q ss_pred ECCEEEEEecCC------------CCCccceEEEEECCCC--cEEEe
Q 007111 208 CGTKWYIAGGGS------------RKKRHAETLIFDILKG--EWSVA 240 (617)
Q Consensus 208 ~~~~IyI~GG~s------------~~~~~~~v~~yDl~~~--~W~~l 240 (617)
..+.+|+-.... .......++.+|..+. .|+.-
T Consensus 337 ~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~ 383 (488)
T cd00216 337 DPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKR 383 (488)
T ss_pred CCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEee
Confidence 125666643211 0112356889998865 48774
No 82
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.11 E-value=4.4 Score=44.49 Aligned_cols=181 Identities=18% Similarity=0.215 Sum_probs=94.1
Q ss_pred EEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECC
Q 007111 53 ISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLK 132 (617)
Q Consensus 53 v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~ 132 (617)
...++.++++|+-+. .+-.+|..+..- .....+..-.-|++ ++...+++|++-||+++. +-.||..
T Consensus 119 ~~~d~t~l~s~sDd~------v~k~~d~s~a~v-~~~l~~htDYVR~g-~~~~~~~hivvtGsYDg~------vrl~DtR 184 (487)
T KOG0310|consen 119 SPQDNTMLVSGSDDK------VVKYWDLSTAYV-QAELSGHTDYVRCG-DISPANDHIVVTGSYDGK------VRLWDTR 184 (487)
T ss_pred cccCCeEEEecCCCc------eEEEEEcCCcEE-EEEecCCcceeEee-ccccCCCeEEEecCCCce------EEEEEec
Confidence 346889999987531 233345444442 43333333344444 344557899999999875 6788888
Q ss_pred CC-cEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-C
Q 007111 133 SL-TWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-G 209 (617)
Q Consensus 133 t~-~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~ 209 (617)
+. .|.. +.....|.. .++.+ .+..|...|| |.+-+||+.++.=. +..+.. .-..--++... +
T Consensus 185 ~~~~~v~-elnhg~pVe----~vl~lpsgs~iasAgG-------n~vkVWDl~~G~ql-l~~~~~--H~KtVTcL~l~s~ 249 (487)
T KOG0310|consen 185 SLTSRVV-ELNHGCPVE----SVLALPSGSLIASAGG-------NSVKVWDLTTGGQL-LTSMFN--HNKTVTCLRLASD 249 (487)
T ss_pred cCCceeE-EecCCCcee----eEEEcCCCCEEEEcCC-------CeEEEEEecCCcee-hhhhhc--ccceEEEEEeecC
Confidence 77 4442 222222322 23333 3354666677 45788888655321 111110 00111122222 4
Q ss_pred CEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCC
Q 007111 210 TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE 276 (617)
Q Consensus 210 ~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~ 276 (617)
+.-.+-||..+ .+-+||. ..|..+..... |.+ -.++.+.. ++.-+++|+.+|-
T Consensus 250 ~~rLlS~sLD~-----~VKVfd~--t~~Kvv~s~~~--~~p--vLsiavs~---dd~t~viGmsnGl 302 (487)
T KOG0310|consen 250 STRLLSGSLDR-----HVKVFDT--TNYKVVHSWKY--PGP--VLSIAVSP---DDQTVVIGMSNGL 302 (487)
T ss_pred CceEeeccccc-----ceEEEEc--cceEEEEeeec--ccc--eeeEEecC---CCceEEEecccce
Confidence 56777777664 3778884 44555542211 111 12333332 4567788887754
No 83
>PRK04043 tolB translocation protein TolB; Provisional
Probab=94.11 E-value=11 Score=41.51 Aligned_cols=186 Identities=8% Similarity=0.059 Sum_probs=101.1
Q ss_pred EEEEEECCCCcEEEeeccCCCCCCcceeEEEEEC-CEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCccc
Q 007111 74 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 152 (617)
Q Consensus 74 ~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~-~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 152 (617)
.+|++|+.++.=+.+.. .+. ........-+ .+|++.-..++ ..++|.+|..+..++++. ..+. ....
T Consensus 214 ~Iyv~dl~tg~~~~lt~---~~g-~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT---~~~~-~d~~ 281 (419)
T PRK04043 214 TLYKYNLYTGKKEKIAS---SQG-MLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQIT---NYPG-IDVN 281 (419)
T ss_pred EEEEEECCCCcEEEEec---CCC-cEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEcc---cCCC-ccCc
Confidence 79999998887666652 111 1111112223 46665544332 368999999999999884 1121 1111
Q ss_pred EEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCC---ccceEEE
Q 007111 153 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK---RHAETLI 229 (617)
Q Consensus 153 ~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~---~~~~v~~ 229 (617)
....-+++.||+.-...+ ..+||++|+.++..+++...+. ........++.|.......... ...++++
T Consensus 282 p~~SPDG~~I~F~Sdr~g---~~~Iy~~dl~~g~~~rlt~~g~-----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v 353 (419)
T PRK04043 282 GNFVEDDKRIVFVSDRLG---YPNIFMKKLNSGSVEQVVFHGK-----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYL 353 (419)
T ss_pred cEECCCCCEEEEEECCCC---CceEEEEECCCCCeEeCccCCC-----cCceECCCCCEEEEEEcCCCcccCCCCcEEEE
Confidence 222235555666544332 2579999999999877754321 2222222345555544322211 2357999
Q ss_pred EECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 230 FDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 230 yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
+|+.+..+..+.... . .. ...+..++ ..|+...... ....++.+++..+.
T Consensus 354 ~d~~~g~~~~LT~~~------~-~~-~p~~SPDG-~~I~f~~~~~--~~~~L~~~~l~g~~ 403 (419)
T PRK04043 354 ISTNSDYIRRLTANG------V-NQ-FPRFSSDG-GSIMFIKYLG--NQSALGIIRLNYNK 403 (419)
T ss_pred EECCCCCeEECCCCC------C-cC-CeEECCCC-CEEEEEEccC--CcEEEEEEecCCCe
Confidence 999999998876321 1 11 12233333 3344433322 23468888887654
No 84
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.96 E-value=0.22 Score=51.87 Aligned_cols=131 Identities=18% Similarity=0.206 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhh-----cHHHHhhhhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHh
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALV-----NREAAEKNFSSV---LKSRQEMEKKLADSLKEMELLKEKLAGLELAQEE 540 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~ 540 (617)
.....+++++...++.|..++++++. .+..+..-...+ -.-...++.+++...++++.+|++++.+..+-+.
T Consensus 23 ~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 23 LELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999988 433333322222 2223334444445555555555555554433322
Q ss_pred hhc-ccccccCCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHH
Q 007111 541 ANS-LSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQR 600 (617)
Q Consensus 541 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (617)
..+ |. .-..---.....+.-++.-+++++..|+.....++.-|.+-++.=..||-+++.
T Consensus 103 ~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI~~~ 162 (302)
T PF10186_consen 103 RRSRLS-ASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELSEIFPIEQV 162 (302)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceee
Confidence 221 22 000001123345666666777777777778888888888888877888888665
No 85
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.91 E-value=0.23 Score=55.73 Aligned_cols=135 Identities=26% Similarity=0.235 Sum_probs=78.9
Q ss_pred CchHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhc
Q 007111 464 PSSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS 543 (617)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~ 543 (617)
++.|--.|+.+++.+-+. |+++...+..+|.++.-+=..-.++++|+..+.++...-+||+-..+-+=-+.+.
T Consensus 83 ts~ik~~ye~El~~ar~~-------l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leA 155 (546)
T KOG0977|consen 83 TSGIKAKYEAELATARKL-------LDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEA 155 (546)
T ss_pred CcchhHHhhhhHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhh
Confidence 377878888887764432 3334444444444444433344444444444444444444443333222222222
Q ss_pred ccccccCCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhh
Q 007111 544 LSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLE 605 (617)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (617)
--|++-.+.--+|.|++-||+=..-+..+|+..|..|.-|+..---+|-.|..|+++|.-|.
T Consensus 156 e~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 156 EINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33344444455667777777777777778888888888888777778888889988887664
No 86
>PRK04922 tolB translocation protein TolB; Provisional
Probab=93.82 E-value=13 Score=41.08 Aligned_cols=146 Identities=10% Similarity=0.024 Sum_probs=76.0
Q ss_pred cCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc
Q 007111 123 LNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG 202 (617)
Q Consensus 123 ~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ 202 (617)
...++++|+.+.....+. ..+. ........-+++.|++....++ ..++|++|+.++....+... +..-..
T Consensus 227 ~~~l~~~dl~~g~~~~l~---~~~g-~~~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~---~~~~~~ 296 (433)
T PRK04922 227 RSAIYVQDLATGQRELVA---SFRG-INGAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNH---FGIDTE 296 (433)
T ss_pred CcEEEEEECCCCCEEEec---cCCC-CccCceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccC---CCCccc
Confidence 357999999988877663 2221 1112222234554554432222 25799999999887665432 111111
Q ss_pred eEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEE
Q 007111 203 CCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVE 282 (617)
Q Consensus 203 ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~ 282 (617)
.+....+..|++.....+ ...+|.+|+.+..+..+... ... .....+..+ ...|++..+.++ ...++
T Consensus 297 ~~~spDG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~------g~~-~~~~~~SpD-G~~Ia~~~~~~~--~~~I~ 363 (433)
T PRK04922 297 PTWAPDGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQ------GNY-NARASVSPD-GKKIAMVHGSGG--QYRIA 363 (433)
T ss_pred eEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEeecC------CCC-ccCEEECCC-CCEEEEEECCCC--ceeEE
Confidence 111212334544433222 24699999988888776421 111 112233332 345555444322 23789
Q ss_pred EEECCCCcc
Q 007111 283 VLSIEKNES 291 (617)
Q Consensus 283 vyd~~~~~W 291 (617)
++|+.+.++
T Consensus 364 v~d~~~g~~ 372 (433)
T PRK04922 364 VMDLSTGSV 372 (433)
T ss_pred EEECCCCCe
Confidence 999877654
No 87
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=93.70 E-value=11 Score=39.72 Aligned_cols=230 Identities=11% Similarity=0.095 Sum_probs=101.6
Q ss_pred ceEEEEECCC-CcEEEccccccCCCCCCCCCCCcccceEEEE--ECCEEEEEcccCCCCCCceEEEEEECC-CCcEEEee
Q 007111 14 DDVQVLNFDR-FSWTAASSKLYLSPSSLPLKIPACRGHSLIS--WGKKVLLVGGKTDSGSDRVSVWTFDTE-TECWSVVE 89 (617)
Q Consensus 14 ~~v~~yd~~t-~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~--~g~~lyV~GG~~~~~~~~~~v~~yd~~-t~~W~~~~ 89 (617)
..+.+|++.+ .++..+... +.... .+.++. .+..+|+.+.. . ..+..|+.. +..+..+.
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~----------~~~~~-~~~l~~spd~~~lyv~~~~-~-----~~i~~~~~~~~g~l~~~~ 74 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVV----------DVPGQ-VQPMVISPDKRHLYVGVRP-E-----FRVLSYRIADDGALTFAA 74 (330)
T ss_pred CCEEEEEECCCCceeeeeEE----------ecCCC-CccEEECCCCCEEEEEECC-C-----CcEEEEEECCCCceEEee
Confidence 4688888853 567665541 11111 122222 24456664331 1 346556654 45676554
Q ss_pred ccCCCCCCcceeEEEE-ECC-EEEEEeecCCCCCccCeEEEEECCCCc--EEEeecCCCCCCCCcccEEEEE-CCcEEEE
Q 007111 90 AKGDIPVARSGHTVVR-ASS-VLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALY-DDKNLLI 164 (617)
Q Consensus 90 ~~g~~P~~R~~~s~~~-~~~-~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV 164 (617)
. .+.....+.++. -++ .+|+.+ .. .+.+.+||+.++. ...+. ..+....-|.+++. +++++|+
T Consensus 75 ~---~~~~~~p~~i~~~~~g~~l~v~~-~~-----~~~v~v~~~~~~g~~~~~~~---~~~~~~~~~~~~~~p~g~~l~v 142 (330)
T PRK11028 75 E---SPLPGSPTHISTDHQGRFLFSAS-YN-----ANCVSVSPLDKDGIPVAPIQ---IIEGLEGCHSANIDPDNRTLWV 142 (330)
T ss_pred e---ecCCCCceEEEECCCCCEEEEEE-cC-----CCeEEEEEECCCCCCCCcee---eccCCCcccEeEeCCCCCEEEE
Confidence 2 222212222322 234 555543 22 3567788876432 12221 12222223454444 4555666
Q ss_pred EccCCCCCCCCeEEEEECCCC-cEEEeecC-CCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECC--CCcEE
Q 007111 165 FGGSSKSKTLNDLYSLDFETM-IWTRIKIR-GFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDIL--KGEWS 238 (617)
Q Consensus 165 ~GG~~~~~~~n~v~~yD~~t~-~W~~~~~~-g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~--~~~W~ 238 (617)
..-.+ +.|.+||+.+. ........ ...+.+..-+.++.. +..+|+.-... +.+.+|++. +.++.
T Consensus 143 ~~~~~-----~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~-----~~v~v~~~~~~~~~~~ 212 (330)
T PRK11028 143 PCLKE-----DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN-----SSVDVWQLKDPHGEIE 212 (330)
T ss_pred eeCCC-----CEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC-----CEEEEEEEeCCCCCEE
Confidence 54322 46999998763 22211000 000111111123333 44677764322 457777765 34544
Q ss_pred Eeec---CCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 239 VAIT---SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 239 ~l~~---~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
.+.. .|...+.++ +.+.+.-+.+..++|+... ..+.|.+|++..
T Consensus 213 ~~~~~~~~p~~~~~~~--~~~~i~~~pdg~~lyv~~~----~~~~I~v~~i~~ 259 (330)
T PRK11028 213 CVQTLDMMPADFSDTR--WAADIHITPDGRHLYACDR----TASLISVFSVSE 259 (330)
T ss_pred EEEEEecCCCcCCCCc--cceeEEECCCCCEEEEecC----CCCeEEEEEEeC
Confidence 4322 222222233 2222222334567777532 234677777644
No 88
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=93.57 E-value=14 Score=40.61 Aligned_cols=202 Identities=15% Similarity=0.121 Sum_probs=94.4
Q ss_pred ceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCccee-EEEE--ECCEEEEEeecCCCCCccCe
Q 007111 49 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGH-TVVR--ASSVLILFGGEDGKRRKLND 125 (617)
Q Consensus 49 ~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~-s~~~--~~~~IYv~GG~~~~~~~~~~ 125 (617)
-++++..+.-.|++||... ..+|.+.+.++.--.+ -.+.|.. ++.. .++..++-||.++.--...-
T Consensus 84 v~al~s~n~G~~l~ag~i~-----g~lYlWelssG~LL~v------~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l 152 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTIS-----GNLYLWELSSGILLNV------LSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLL 152 (476)
T ss_pred eeeeecCCCceEEEeeccc-----CcEEEEEeccccHHHH------HHhhccceeEEEEeCCCcEEEecCCCccEEEEEE
Confidence 3677777777788887422 2577777766643211 1111111 1111 26788888888775111111
Q ss_pred EEEEECCCCcEEEeecCCCCCCCC---cccEEEEECCcEEEEEccCCCCC----CCCeEEEEECCCCcEEEeecCCCCCC
Q 007111 126 LHMFDLKSLTWLPLHCTGTGPSPR---SNHVAALYDDKNLLIFGGSSKSK----TLNDLYSLDFETMIWTRIKIRGFHPS 198 (617)
Q Consensus 126 v~~yD~~t~~W~~l~~~g~~P~~R---~~h~a~~~~~~~LyV~GG~~~~~----~~n~v~~yD~~t~~W~~~~~~g~~P~ 198 (617)
+..++..... .|.|+ .+|+..+.+ - -+=+||....- -=+.+-+||+..+.--.-. ..
T Consensus 153 ~~lv~a~~~~---------~~~p~~~f~~HtlsITD-l-~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti-----~f 216 (476)
T KOG0646|consen 153 TDLVSADNDH---------SVKPLHIFSDHTLSITD-L-QIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI-----TF 216 (476)
T ss_pred EeecccccCC---------CccceeeeccCcceeEE-E-EecCCCccceEEEecCCceEEEEEeccceeeEEE-----ec
Confidence 1112221111 12222 345554432 1 12234432211 1134667777666332222 23
Q ss_pred CCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCC-----------------CcEEEeecCCCCCCCCCcceEEEEEe
Q 007111 199 PRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILK-----------------GEWSVAITSPSSSVTSNKGFTLVLVQ 260 (617)
Q Consensus 199 ~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~-----------------~~W~~l~~~~~~~p~~r~~~s~v~v~ 260 (617)
|+.-++++.. .++.+.+|+..+. ++..++.+ .+...+. .-..+...++-.+.
T Consensus 217 p~si~av~lDpae~~~yiGt~~G~-----I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~-----Gh~~~~~ITcLais 286 (476)
T KOG0646|consen 217 PSSIKAVALDPAERVVYIGTEEGK-----IFQNLLFKLSGQSAGVNQKGRHEENTQINVLV-----GHENESAITCLAIS 286 (476)
T ss_pred CCcceeEEEcccccEEEecCCcce-----EEeeehhcCCcccccccccccccccceeeeec-----cccCCcceeEEEEe
Confidence 5555566654 4556666665443 33333211 1111110 01122233333333
Q ss_pred ecCCcEEEEEcCCCCCCCCeEEEEECCCCcccc
Q 007111 261 HKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSM 293 (617)
Q Consensus 261 ~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W~~ 293 (617)
-++.+++.|+.++ .|-++|+...+.-+
T Consensus 287 --~DgtlLlSGd~dg----~VcvWdi~S~Q~iR 313 (476)
T KOG0646|consen 287 --TDGTLLLSGDEDG----KVCVWDIYSKQCIR 313 (476)
T ss_pred --cCccEEEeeCCCC----CEEEEecchHHHHH
Confidence 3477899998865 57889988776533
No 89
>PRK13684 Ycf48-like protein; Provisional
Probab=93.56 E-value=11 Score=40.23 Aligned_cols=178 Identities=11% Similarity=0.126 Sum_probs=90.0
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEE-EECCCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHM-FDLKSL 134 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~-yD~~t~ 134 (617)
++.+|+.|.. ..+++-+-.-.+|..+.. +..-.-+.+....+..|++.|..+. ++. .|....
T Consensus 142 ~~~~~~~g~~-------G~i~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~~G~------i~~s~~~gg~ 204 (334)
T PRK13684 142 PGTAEMATNV-------GAIYRTTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSSRGN------FYSTWEPGQT 204 (334)
T ss_pred CCcceeeecc-------ceEEEECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeCCce------EEEEcCCCCC
Confidence 3456666542 246666666789998863 3333344454444444444443332 232 234446
Q ss_pred cEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEE-C-CCCcEEEeecCCCCCCCCcceEEEEE-CCE
Q 007111 135 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLD-F-ETMIWTRIKIRGFHPSPRAGCCGVLC-GTK 211 (617)
Q Consensus 135 ~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD-~-~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~ 211 (617)
+|+.+. .+..+.-++++...+..++++|... ..++. . .-..|+.+.. +........++++.. ++.
T Consensus 205 tW~~~~----~~~~~~l~~i~~~~~g~~~~vg~~G-------~~~~~s~d~G~sW~~~~~-~~~~~~~~l~~v~~~~~~~ 272 (334)
T PRK13684 205 AWTPHQ----RNSSRRLQSMGFQPDGNLWMLARGG-------QIRFNDPDDLESWSKPII-PEITNGYGYLDLAYRTPGE 272 (334)
T ss_pred eEEEee----CCCcccceeeeEcCCCCEEEEecCC-------EEEEccCCCCCccccccC-CccccccceeeEEEcCCCC
Confidence 799874 2444444455554444488887543 23342 2 3358997643 111111222334444 667
Q ss_pred EEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCC
Q 007111 212 WYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 274 (617)
Q Consensus 212 IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~ 274 (617)
+|++|... .++.-.-...+|..+.... .. +...+.++... .+..|++|...
T Consensus 273 ~~~~G~~G------~v~~S~d~G~tW~~~~~~~-~~--~~~~~~~~~~~---~~~~~~~G~~G 323 (334)
T PRK13684 273 IWAGGGNG------TLLVSKDGGKTWEKDPVGE-EV--PSNFYKIVFLD---PEKGFVLGQRG 323 (334)
T ss_pred EEEEcCCC------eEEEeCCCCCCCeECCcCC-CC--CcceEEEEEeC---CCceEEECCCc
Confidence 88887532 2333333456899975211 11 12334444443 35678888653
No 90
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.56 E-value=13 Score=40.43 Aligned_cols=241 Identities=11% Similarity=0.038 Sum_probs=121.4
Q ss_pred ccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEEC-CEEEEEcccCCCC-----CCceEEEEEECCCCcE
Q 007111 12 LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWG-KKVLLVGGKTDSG-----SDRVSVWTFDTETECW 85 (617)
Q Consensus 12 ~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g-~~lyV~GG~~~~~-----~~~~~v~~yd~~t~~W 85 (617)
....+.++|+.+++...-. ++...+.+++..+ ++.|++....... .....||++...+..-
T Consensus 148 e~~~l~v~Dl~tg~~l~d~-------------i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~ 214 (414)
T PF02897_consen 148 EWYTLRVFDLETGKFLPDG-------------IENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQS 214 (414)
T ss_dssp SEEEEEEEETTTTEEEEEE-------------EEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GG
T ss_pred ceEEEEEEECCCCcCcCCc-------------ccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChH
Confidence 3446788888887543221 1122222244443 3555555443321 1267899999887753
Q ss_pred E--EeeccCCCCCCcc-eeEE-EEECCEEEEEeecCCCCCccCeEEEEECCCC-----cEEEeecCCCCCCCCcccEEEE
Q 007111 86 S--VVEAKGDIPVARS-GHTV-VRASSVLILFGGEDGKRRKLNDLHMFDLKSL-----TWLPLHCTGTGPSPRSNHVAAL 156 (617)
Q Consensus 86 ~--~~~~~g~~P~~R~-~~s~-~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~-----~W~~l~~~g~~P~~R~~h~a~~ 156 (617)
. .+- ..+.... ...+ ..-+++.+++.-..... .+.+|.+|.... .|..+.. +..-..+.+..
T Consensus 215 ~d~lvf---e~~~~~~~~~~~~~s~d~~~l~i~~~~~~~--~s~v~~~d~~~~~~~~~~~~~l~~----~~~~~~~~v~~ 285 (414)
T PF02897_consen 215 EDELVF---EEPDEPFWFVSVSRSKDGRYLFISSSSGTS--ESEVYLLDLDDGGSPDAKPKLLSP----REDGVEYYVDH 285 (414)
T ss_dssp G-EEEE---C-TTCTTSEEEEEE-TTSSEEEEEEESSSS--EEEEEEEECCCTTTSS-SEEEEEE----SSSS-EEEEEE
T ss_pred hCeeEE---eecCCCcEEEEEEecCcccEEEEEEEcccc--CCeEEEEeccccCCCcCCcEEEeC----CCCceEEEEEc
Confidence 3 332 1222232 2222 22344433333222221 378999999875 7998842 12222223344
Q ss_pred ECCcEEEEEccCCCCCCCCeEEEEECCCCc---EEEeecCCCCCCCC-cceEEEEECCEEEEEecCCCCCccceEEEEEC
Q 007111 157 YDDKNLLIFGGSSKSKTLNDLYSLDFETMI---WTRIKIRGFHPSPR-AGCCGVLCGTKWYIAGGGSRKKRHAETLIFDI 232 (617)
Q Consensus 157 ~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~---W~~~~~~g~~P~~R-~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl 232 (617)
.++. +|+.... ......+..+++.... |..+-.. +... .--.+...++.+++.-=.+ ....+.+||+
T Consensus 286 ~~~~-~yi~Tn~--~a~~~~l~~~~l~~~~~~~~~~~l~~---~~~~~~l~~~~~~~~~Lvl~~~~~---~~~~l~v~~~ 356 (414)
T PF02897_consen 286 HGDR-LYILTND--DAPNGRLVAVDLADPSPAEWWTVLIP---EDEDVSLEDVSLFKDYLVLSYREN---GSSRLRVYDL 356 (414)
T ss_dssp ETTE-EEEEE-T--T-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEETTEEEEEEEET---TEEEEEEEET
T ss_pred cCCE-EEEeeCC--CCCCcEEEEecccccccccceeEEcC---CCCceeEEEEEEECCEEEEEEEEC---CccEEEEEEC
Confidence 4666 7777552 3344678999997665 7754332 2222 2334455688888774322 2357899999
Q ss_pred C-CCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 233 L-KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 233 ~-~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
. ...-..++. | .....+.+.....++...|.+.|.. ....++.||+.+++.
T Consensus 357 ~~~~~~~~~~~-----p-~~g~v~~~~~~~~~~~~~~~~ss~~--~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 357 DDGKESREIPL-----P-EAGSVSGVSGDFDSDELRFSYSSFT--TPPTVYRYDLATGEL 408 (414)
T ss_dssp T-TEEEEEEES-----S-SSSEEEEEES-TT-SEEEEEEEETT--EEEEEEEEETTTTCE
T ss_pred CCCcEEeeecC-----C-cceEEeccCCCCCCCEEEEEEeCCC--CCCEEEEEECCCCCE
Confidence 8 333333321 1 1111122221223445555566664 245899999999874
No 91
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=93.48 E-value=5.7 Score=38.86 Aligned_cols=151 Identities=14% Similarity=0.179 Sum_probs=78.9
Q ss_pred EEEEECCEEEEEcccCCCCCCceEEEEEECCCCcE--EEeeccC-CCCCCcceeEEEEEC-CEEEEEeecCCCCCccCeE
Q 007111 51 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECW--SVVEAKG-DIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDL 126 (617)
Q Consensus 51 s~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W--~~~~~~g-~~P~~R~~~s~~~~~-~~IYv~GG~~~~~~~~~~v 126 (617)
+++...+++|+|-|. .+|+|+...... ..+.... .+| ....++..... +++|+|-| +..
T Consensus 11 A~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p-~~IDAa~~~~~~~~~yfFkg--------~~y 73 (194)
T cd00094 11 AVTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLP-SPVDAAFERPDTGKIYFFKG--------DKY 73 (194)
T ss_pred eEEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCC-CCccEEEEECCCCEEEEECC--------CEE
Confidence 445556999999764 589988752222 2222111 122 23444443333 78999844 357
Q ss_pred EEEECCCCcEE---EeecCCCCCC--CCcccEEEEEC-CcEEEEEccCCCCCCCCeEEEEECCCCcEEEe-----ec-CC
Q 007111 127 HMFDLKSLTWL---PLHCTGTGPS--PRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRI-----KI-RG 194 (617)
Q Consensus 127 ~~yD~~t~~W~---~l~~~g~~P~--~R~~h~a~~~~-~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~-----~~-~g 194 (617)
|+|+..+..+. .+... .+|. .... ++.... +..+|+|-|. ..|+||...++...- .. -.
T Consensus 74 w~~~~~~~~~~~Pk~i~~~-~~~~~~~~iD-AA~~~~~~~~~yfFkg~-------~y~ry~~~~~~v~~~yP~~i~~~w~ 144 (194)
T cd00094 74 WVYTGKNLEPGYPKPISDL-GFPPTVKQID-AALRWPDNGKTYFFKGD-------KYWRYDEKTQKMDPGYPKLIETDFP 144 (194)
T ss_pred EEEcCcccccCCCcchhhc-CCCCCCCCcc-EEEEEcCCCEEEEEeCC-------EEEEEeCCCccccCCCCcchhhcCC
Confidence 88876542221 11100 1111 1222 333333 3449999884 488998765543211 00 01
Q ss_pred CCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCc
Q 007111 195 FHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 195 ~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
..|.. -.++... ++++|++-| +..|+||..+.+
T Consensus 145 g~p~~--idaa~~~~~~~~yfF~g-------~~y~~~d~~~~~ 178 (194)
T cd00094 145 GVPDK--VDAAFRWLDGYYYFFKG-------DQYWRFDPRSKE 178 (194)
T ss_pred CcCCC--cceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence 12222 2233334 489999988 458999987765
No 92
>PLN00181 protein SPA1-RELATED; Provisional
Probab=93.21 E-value=24 Score=42.28 Aligned_cols=143 Identities=15% Similarity=0.200 Sum_probs=68.3
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCc-EEEeeccCCCCCCcceeEEEE---ECCEEEEEeecCCCCCccCeEEEEEC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETEC-WSVVEAKGDIPVARSGHTVVR---ASSVLILFGGEDGKRRKLNDLHMFDL 131 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~g~~P~~R~~~s~~~---~~~~IYv~GG~~~~~~~~~~v~~yD~ 131 (617)
++.+++.||.+. .+.+||+.+.. ...+.. . ....++. .++.+++.|+.++ .+.+||+
T Consensus 587 ~~~~L~Sgs~Dg------~v~iWd~~~~~~~~~~~~----~---~~v~~v~~~~~~g~~latgs~dg------~I~iwD~ 647 (793)
T PLN00181 587 DPTLLASGSDDG------SVKLWSINQGVSIGTIKT----K---ANICCVQFPSESGRSLAFGSADH------KVYYYDL 647 (793)
T ss_pred CCCEEEEEcCCC------EEEEEECCCCcEEEEEec----C---CCeEEEEEeCCCCCEEEEEeCCC------eEEEEEC
Confidence 456777777632 57888877653 222221 1 1111222 2467777776543 5889998
Q ss_pred CCCc--EEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCC----cEEEeecCCCCCCCCcceEE
Q 007111 132 KSLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM----IWTRIKIRGFHPSPRAGCCG 205 (617)
Q Consensus 132 ~t~~--W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~----~W~~~~~~g~~P~~R~~ha~ 205 (617)
.+.. ...+. +. ..+ -..+...++. .++.|+.++ .+-.||+.+. .|..+...... ........
T Consensus 648 ~~~~~~~~~~~--~h-~~~--V~~v~f~~~~-~lvs~s~D~-----~ikiWd~~~~~~~~~~~~l~~~~gh-~~~i~~v~ 715 (793)
T PLN00181 648 RNPKLPLCTMI--GH-SKT--VSYVRFVDSS-TLVSSSTDN-----TLKLWDLSMSISGINETPLHSFMGH-TNVKNFVG 715 (793)
T ss_pred CCCCccceEec--CC-CCC--EEEEEEeCCC-EEEEEECCC-----EEEEEeCCCCccccCCcceEEEcCC-CCCeeEEE
Confidence 7543 22221 10 001 1122233556 667777664 3778887542 23322221101 11111111
Q ss_pred EEECCEEEEEecCCCCCccceEEEEECCC
Q 007111 206 VLCGTKWYIAGGGSRKKRHAETLIFDILK 234 (617)
Q Consensus 206 v~~~~~IyI~GG~s~~~~~~~v~~yDl~~ 234 (617)
...++.+++.|+.++ .+.+|+...
T Consensus 716 ~s~~~~~lasgs~D~-----~v~iw~~~~ 739 (793)
T PLN00181 716 LSVSDGYIATGSETN-----EVFVYHKAF 739 (793)
T ss_pred EcCCCCEEEEEeCCC-----EEEEEECCC
Confidence 222566667776543 466777543
No 93
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=93.10 E-value=14 Score=39.40 Aligned_cols=202 Identities=15% Similarity=0.179 Sum_probs=102.2
Q ss_pred EEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEE--ECCEEEEEeecCCCCCccCeEEEEEC--CCCc
Q 007111 60 LLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDL--KSLT 135 (617)
Q Consensus 60 yV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~--~~~~IYv~GG~~~~~~~~~~v~~yD~--~t~~ 135 (617)
+++|++.........++.||..+.++..+... ...-...-++. .++.||+...... ....+..|+. .+.+
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~---~~~~~Ps~l~~~~~~~~LY~~~e~~~---~~g~v~~~~i~~~~g~ 75 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV---AEGENPSWLAVSPDGRRLYVVNEGSG---DSGGVSSYRIDPDTGT 75 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE---EESSSECCEEE-TTSSEEEEEETTSS---TTTEEEEEEEETTTTE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee---cCCCCCceEEEEeCCCEEEEEEcccc---CCCCEEEEEECCCcce
Confidence 35677755334445677788899999888732 12212222333 3568888865431 1234555544 4467
Q ss_pred EEEeecCCCCCCCCcccEEEEE--CCcEEEEEccCCCCCCCCeEEEEECCCC-cEEEeec------CCC---CCCCCcce
Q 007111 136 WLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETM-IWTRIKI------RGF---HPSPRAGC 203 (617)
Q Consensus 136 W~~l~~~g~~P~~R~~h~a~~~--~~~~LyV~GG~~~~~~~n~v~~yD~~t~-~W~~~~~------~g~---~P~~R~~h 203 (617)
.+.+. ..+......+.+.+ ++++||+.- +.+ ..+..|++..+ .-..... .+. ....-.-|
T Consensus 76 L~~~~---~~~~~g~~p~~i~~~~~g~~l~van-y~~----g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H 147 (345)
T PF10282_consen 76 LTLLN---SVPSGGSSPCHIAVDPDGRFLYVAN-YGG----GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPH 147 (345)
T ss_dssp EEEEE---EEEESSSCEEEEEECTTSSEEEEEE-TTT----TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEE
T ss_pred eEEee---eeccCCCCcEEEEEecCCCEEEEEE-ccC----CeEEEEEccCCcccceeeeecccCCCCCcccccccccce
Confidence 87774 33322222233333 566566653 221 34777877653 2222210 011 11222235
Q ss_pred EEEEE--CCEEEEEecCCCCCccceEEEEECCCCc--EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCC
Q 007111 204 CGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGE--WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSN 279 (617)
Q Consensus 204 a~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~--W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~ 279 (617)
.+... +..+|+..= ..+.+++|+++... ........ .....+....++.. +...+|++... .+
T Consensus 148 ~v~~~pdg~~v~v~dl-----G~D~v~~~~~~~~~~~l~~~~~~~---~~~G~GPRh~~f~p-dg~~~Yv~~e~----s~ 214 (345)
T PF10282_consen 148 QVVFSPDGRFVYVPDL-----GADRVYVYDIDDDTGKLTPVDSIK---VPPGSGPRHLAFSP-DGKYAYVVNEL----SN 214 (345)
T ss_dssp EEEE-TTSSEEEEEET-----TTTEEEEEEE-TTS-TEEEEEEEE---CSTTSSEEEEEE-T-TSSEEEEEETT----TT
T ss_pred eEEECCCCCEEEEEec-----CCCEEEEEEEeCCCceEEEeeccc---cccCCCCcEEEEcC-CcCEEEEecCC----CC
Confidence 55554 346777632 13568888887665 54432211 12333444444443 45789998765 45
Q ss_pred eEEEEECCC
Q 007111 280 QVEVLSIEK 288 (617)
Q Consensus 280 dV~vyd~~~ 288 (617)
.|.+|+...
T Consensus 215 ~v~v~~~~~ 223 (345)
T PF10282_consen 215 TVSVFDYDP 223 (345)
T ss_dssp EEEEEEEET
T ss_pred cEEEEeecc
Confidence 777777773
No 94
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=93.04 E-value=11 Score=37.90 Aligned_cols=215 Identities=14% Similarity=0.060 Sum_probs=111.3
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
++.+|+..-. ...++++++.+..-..... |. ..+++.. ++.+|+... ..+.++|+.+
T Consensus 11 ~g~l~~~D~~------~~~i~~~~~~~~~~~~~~~----~~---~~G~~~~~~~g~l~v~~~--------~~~~~~d~~~ 69 (246)
T PF08450_consen 11 DGRLYWVDIP------GGRIYRVDPDTGEVEVIDL----PG---PNGMAFDRPDGRLYVADS--------GGIAVVDPDT 69 (246)
T ss_dssp TTEEEEEETT------TTEEEEEETTTTEEEEEES----SS---EEEEEEECTTSEEEEEET--------TCEEEEETTT
T ss_pred CCEEEEEEcC------CCEEEEEECCCCeEEEEec----CC---CceEEEEccCCEEEEEEc--------CceEEEecCC
Confidence 5778877322 2379999999998776652 33 3334443 678888742 2356779999
Q ss_pred CcEEEeecC--CCCCCCCcccEEEEECCcEEEEEccCC-CCCCC--CeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE
Q 007111 134 LTWLPLHCT--GTGPSPRSNHVAALYDDKNLLIFGGSS-KSKTL--NDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC 208 (617)
Q Consensus 134 ~~W~~l~~~--g~~P~~R~~h~a~~~~~~~LyV~GG~~-~~~~~--n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~ 208 (617)
.+++.+... +..+..+..-.++.-+++ +|+.--.. ..... ..++++++. ++...+... ..+. ..++..
T Consensus 70 g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~----~~~p-NGi~~s 142 (246)
T PF08450_consen 70 GKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG----LGFP-NGIAFS 142 (246)
T ss_dssp TEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE----ESSE-EEEEEE
T ss_pred CcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecC----cccc-cceEEC
Confidence 999887422 111333333333333455 77653221 11111 679999998 676666442 1111 234443
Q ss_pred --CCEEEEEecCCCCCccceEEEEECCCCc--EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEE
Q 007111 209 --GTKWYIAGGGSRKKRHAETLIFDILKGE--WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVL 284 (617)
Q Consensus 209 --~~~IyI~GG~s~~~~~~~v~~yDl~~~~--W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vy 284 (617)
+..+|+.--. ...+|+|++.... +....... ..+......--..+. ..+.||+..-. .+.|++|
T Consensus 143 ~dg~~lyv~ds~-----~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~g~pDG~~vD--~~G~l~va~~~----~~~I~~~ 210 (246)
T PF08450_consen 143 PDGKTLYVADSF-----NGRIWRFDLDADGGELSNRRVFI-DFPGGPGYPDGLAVD--SDGNLWVADWG----GGRIVVF 210 (246)
T ss_dssp TTSSEEEEEETT-----TTEEEEEEEETTTCCEEEEEEEE-E-SSSSCEEEEEEEB--TTS-EEEEEET----TTEEEEE
T ss_pred Ccchheeecccc-----cceeEEEeccccccceeeeeeEE-EcCCCCcCCCcceEc--CCCCEEEEEcC----CCEEEEE
Confidence 4467775322 2459999986432 33221110 001111112223333 34678876221 2389999
Q ss_pred ECCCCccccccccccCccCCceeeeccCC
Q 007111 285 SIEKNESSMGRRSTPNAKGPGQLLFEKRS 313 (617)
Q Consensus 285 d~~~~~W~~~w~~~~~~~~~~v~vfGG~~ 313 (617)
+++... ..... .+. ..+.-+.|||..
T Consensus 211 ~p~G~~-~~~i~-~p~-~~~t~~~fgg~~ 236 (246)
T PF08450_consen 211 DPDGKL-LREIE-LPV-PRPTNCAFGGPD 236 (246)
T ss_dssp ETTSCE-EEEEE--SS-SSEEEEEEESTT
T ss_pred CCCccE-EEEEc-CCC-CCEEEEEEECCC
Confidence 998443 12121 221 345556788764
No 95
>PRK03629 tolB translocation protein TolB; Provisional
Probab=92.91 E-value=18 Score=40.02 Aligned_cols=149 Identities=15% Similarity=0.096 Sum_probs=78.4
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCccc
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 152 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 152 (617)
..+|.+|+.+++-+.+. ..+..-........+.+|++.....+ ..++|++|+.+...+++.. .+. ....
T Consensus 223 ~~i~i~dl~~G~~~~l~---~~~~~~~~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~---~~~-~~~~ 291 (429)
T PRK03629 223 SALVIQTLANGAVRQVA---SFPRHNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTD---GRS-NNTE 291 (429)
T ss_pred cEEEEEECCCCCeEEcc---CCCCCcCCeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccC---CCC-CcCc
Confidence 46999999888766654 22221111111122345665543322 2469999999988887731 111 1111
Q ss_pred EEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEEC
Q 007111 153 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDI 232 (617)
Q Consensus 153 ~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl 232 (617)
....-+++.|+......+ ...+|.+|+.++....+...+ ......+....+..|++.+...+ ...++.+|+
T Consensus 292 ~~wSPDG~~I~f~s~~~g---~~~Iy~~d~~~g~~~~lt~~~---~~~~~~~~SpDG~~Ia~~~~~~g---~~~I~~~dl 362 (429)
T PRK03629 292 PTWFPDSQNLAYTSDQAG---RPQVYKVNINGGAPQRITWEG---SQNQDADVSSDGKFMVMVSSNGG---QQHIAKQDL 362 (429)
T ss_pred eEECCCCCEEEEEeCCCC---CceEEEEECCCCCeEEeecCC---CCccCEEECCCCCEEEEEEccCC---CceEEEEEC
Confidence 222224553443332222 247999999888777664321 11111121222344544443222 246899999
Q ss_pred CCCcEEEee
Q 007111 233 LKGEWSVAI 241 (617)
Q Consensus 233 ~~~~W~~l~ 241 (617)
.+..+..+.
T Consensus 363 ~~g~~~~Lt 371 (429)
T PRK03629 363 ATGGVQVLT 371 (429)
T ss_pred CCCCeEEeC
Confidence 999888775
No 96
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=92.47 E-value=3.3 Score=46.47 Aligned_cols=127 Identities=13% Similarity=0.150 Sum_probs=64.8
Q ss_pred CCCCcccEEEEECCc-EEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCcc
Q 007111 146 PSPRSNHVAALYDDK-NLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRH 224 (617)
Q Consensus 146 P~~R~~h~a~~~~~~-~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~ 224 (617)
-.|++|.-++...-. -||+.| .+ ++||+++++.++|-..-.. ..+-.+++.+---..++.+||..+
T Consensus 131 RIP~~GRDm~y~~~scDly~~g-sg-----~evYRlNLEqGrfL~P~~~---~~~~lN~v~in~~hgLla~Gt~~g---- 197 (703)
T KOG2321|consen 131 RIPKFGRDMKYHKPSCDLYLVG-SG-----SEVYRLNLEQGRFLNPFET---DSGELNVVSINEEHGLLACGTEDG---- 197 (703)
T ss_pred ecCcCCccccccCCCccEEEee-cC-----cceEEEEcccccccccccc---ccccceeeeecCccceEEecccCc----
Confidence 344555555554322 244443 32 4699999999999654332 112222222222346778888654
Q ss_pred ceEEEEECCCCcEEEeecCCCC---CCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 225 AETLIFDILKGEWSVAITSPSS---SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 225 ~~v~~yDl~~~~W~~l~~~~~~---~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.+..+|+....-......+.. .|......+..++...+++-=+.+|-..| .|++||+.+.+
T Consensus 198 -~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G----~v~iyDLRa~~ 261 (703)
T KOG2321|consen 198 -VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG----SVLIYDLRASK 261 (703)
T ss_pred -eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC----cEEEEEcccCC
Confidence 478888876542222111111 12222223333444444454555665543 67888887654
No 97
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=92.47 E-value=13 Score=37.37 Aligned_cols=224 Identities=17% Similarity=0.176 Sum_probs=100.5
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 93 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~ 93 (617)
+.+.+||+.+.+....-. ...... ..+....++.+|+.++.+ ..+.+||+.+..-...
T Consensus 53 ~~v~~~d~~~~~~~~~~~----------~~~~~~-~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~~~~~----- 110 (300)
T TIGR03866 53 DTIQVIDLATGEVIGTLP----------SGPDPE-LFALHPNGKILYIANEDD------NLVTVIDIETRKVLAE----- 110 (300)
T ss_pred CeEEEEECCCCcEEEecc----------CCCCcc-EEEECCCCCEEEEEcCCC------CeEEEEECCCCeEEeE-----
Confidence 458888888776543211 001111 111111244566665431 2688999987642211
Q ss_pred CCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCC
Q 007111 94 IPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK 172 (617)
Q Consensus 94 ~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~ 172 (617)
++......+++. -++.+++++..+. +.++.||..+..-......+..| .+.+..-++..+++.+..+
T Consensus 111 ~~~~~~~~~~~~~~dg~~l~~~~~~~-----~~~~~~d~~~~~~~~~~~~~~~~----~~~~~s~dg~~l~~~~~~~--- 178 (300)
T TIGR03866 111 IPVGVEPEGMAVSPDGKIVVNTSETT-----NMAHFIDTKTYEIVDNVLVDQRP----RFAEFTADGKELWVSSEIG--- 178 (300)
T ss_pred eeCCCCcceEEECCCCCEEEEEecCC-----CeEEEEeCCCCeEEEEEEcCCCc----cEEEECCCCCEEEEEcCCC---
Confidence 111111122333 3566666654432 24566788765432211111111 1222233555344433223
Q ss_pred CCCeEEEEECCCCcEEE-eecC--CCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCC
Q 007111 173 TLNDLYSLDFETMIWTR-IKIR--GFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSS 247 (617)
Q Consensus 173 ~~n~v~~yD~~t~~W~~-~~~~--g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~ 247 (617)
..+..||+.+.+... +... +..+.......++.. +..+|+..+.. +.+.+||..+.+-.... .
T Consensus 179 --~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~-----~~i~v~d~~~~~~~~~~--~--- 246 (300)
T TIGR03866 179 --GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA-----NRVAVVDAKTYEVLDYL--L--- 246 (300)
T ss_pred --CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC-----CeEEEEECCCCcEEEEE--E---
Confidence 358999998765432 2111 001111111222222 34556654432 35889998654432211 1
Q ss_pred CCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 248 VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 248 p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.... ...+.+.. +...||+..+.+ +.|.+||+.+.+
T Consensus 247 -~~~~-~~~~~~~~-~g~~l~~~~~~~----~~i~v~d~~~~~ 282 (300)
T TIGR03866 247 -VGQR-VWQLAFTP-DEKYLLTTNGVS----NDVSVIDVAALK 282 (300)
T ss_pred -eCCC-cceEEECC-CCCEEEEEcCCC----CeEEEEECCCCc
Confidence 0111 11223332 234455444432 379999998865
No 98
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=92.38 E-value=15 Score=37.77 Aligned_cols=195 Identities=15% Similarity=0.131 Sum_probs=99.0
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCC-----CcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEE
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTET-----ECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFD 130 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t-----~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD 130 (617)
.+++|++.|.... .++.|.... +.+...- .+|.+-.|...++++|.+|..-. ..+.+.+||
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~---~Lp~~~~GtG~vVYngslYY~~~------~s~~Ivkyd 95 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTY---KLPYPWQGTGHVVYNGSLYYNKY------NSRNIVKYD 95 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEE---EEeceeccCCeEEECCcEEEEec------CCceEEEEE
Confidence 5678888876432 566664322 2222222 35666667777778888888743 367899999
Q ss_pred CCCCcEE---EeecCCC---CCCCCcccEEE--EECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc
Q 007111 131 LKSLTWL---PLHCTGT---GPSPRSNHVAA--LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG 202 (617)
Q Consensus 131 ~~t~~W~---~l~~~g~---~P~~R~~h~a~--~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ 202 (617)
+.+..-. .++-.+- .|....+++-+ .+|...|+|+=......-.=.|-+.|+.+..-.+..... .+.+..+
T Consensus 96 L~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~-~~k~~~~ 174 (250)
T PF02191_consen 96 LTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTS-YPKRSAG 174 (250)
T ss_pred CcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEec-cCchhhc
Confidence 9998644 3421111 11111122211 123333655543332211123566777665444433321 2333333
Q ss_pred eEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEc
Q 007111 203 CCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFG 271 (617)
Q Consensus 203 ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~G 271 (617)
. +..+-|.+|++...+... ..=.+.||+.+++=..+.. ..+.....++++-.. .-+..||+.-
T Consensus 175 n-aFmvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~~~i---~f~~~~~~~~~l~YN-P~dk~LY~wd 237 (250)
T PF02191_consen 175 N-AFMVCGVLYATDSYDTRD-TEIFYAFDTYTGKEEDVSI---PFPNPYGNISMLSYN-PRDKKLYAWD 237 (250)
T ss_pred c-eeeEeeEEEEEEECCCCC-cEEEEEEECCCCceeceee---eeccccCceEeeeEC-CCCCeEEEEE
Confidence 3 333467888887654332 2224899998876554321 122222234444333 3346677654
No 99
>PLN00181 protein SPA1-RELATED; Provisional
Probab=92.31 E-value=29 Score=41.56 Aligned_cols=184 Identities=12% Similarity=0.100 Sum_probs=86.5
Q ss_pred CEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEE--ECCEEEEEeecCCCCCccCeEEEEECCCC
Q 007111 57 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSL 134 (617)
Q Consensus 57 ~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~--~~~~IYv~GG~~~~~~~~~~v~~yD~~t~ 134 (617)
+..++.|+.+ ..+.+||..+......- .... ..-.+++. .++.+++.||.++ .+.+||+.+.
T Consensus 545 ~~~las~~~D------g~v~lWd~~~~~~~~~~---~~H~-~~V~~l~~~p~~~~~L~Sgs~Dg------~v~iWd~~~~ 608 (793)
T PLN00181 545 KSQVASSNFE------GVVQVWDVARSQLVTEM---KEHE-KRVWSIDYSSADPTLLASGSDDG------SVKLWSINQG 608 (793)
T ss_pred CCEEEEEeCC------CeEEEEECCCCeEEEEe---cCCC-CCEEEEEEcCCCCCEEEEEcCCC------EEEEEECCCC
Confidence 4455556552 25788888766432211 0011 11122222 2457777777654 3788888765
Q ss_pred cE-EEeecCCCCCCCCcccEEEEE---CCcEEEEEccCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCCcceEEEEE
Q 007111 135 TW-LPLHCTGTGPSPRSNHVAALY---DDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLC 208 (617)
Q Consensus 135 ~W-~~l~~~g~~P~~R~~h~a~~~---~~~~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~~~~g~~P~~R~~ha~v~~ 208 (617)
.- ..+. . .....++.+ ++. ++++|+.++ .|..||+.+.. ...+... ..+ -..+...
T Consensus 609 ~~~~~~~--~-----~~~v~~v~~~~~~g~-~latgs~dg-----~I~iwD~~~~~~~~~~~~~h---~~~--V~~v~f~ 670 (793)
T PLN00181 609 VSIGTIK--T-----KANICCVQFPSESGR-SLAFGSADH-----KVYYYDLRNPKLPLCTMIGH---SKT--VSYVRFV 670 (793)
T ss_pred cEEEEEe--c-----CCCeEEEEEeCCCCC-EEEEEeCCC-----eEEEEECCCCCccceEecCC---CCC--EEEEEEe
Confidence 42 2221 1 111122222 244 777777664 59999986543 1111110 111 1223333
Q ss_pred CCEEEEEecCCCCCccceEEEEECCCC----cEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEE
Q 007111 209 GTKWYIAGGGSRKKRHAETLIFDILKG----EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVL 284 (617)
Q Consensus 209 ~~~IyI~GG~s~~~~~~~v~~yDl~~~----~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vy 284 (617)
++..++.|+..+ .+.+||+... .|..+...... . .....+.+.. .+.+++.|+.++ .|.+|
T Consensus 671 ~~~~lvs~s~D~-----~ikiWd~~~~~~~~~~~~l~~~~gh--~--~~i~~v~~s~--~~~~lasgs~D~----~v~iw 735 (793)
T PLN00181 671 DSSTLVSSSTDN-----TLKLWDLSMSISGINETPLHSFMGH--T--NVKNFVGLSV--SDGYIATGSETN----EVFVY 735 (793)
T ss_pred CCCEEEEEECCC-----EEEEEeCCCCccccCCcceEEEcCC--C--CCeeEEEEcC--CCCEEEEEeCCC----EEEEE
Confidence 566666666542 3667777542 22222111100 0 0111222322 244777888654 57777
Q ss_pred ECCCC
Q 007111 285 SIEKN 289 (617)
Q Consensus 285 d~~~~ 289 (617)
+....
T Consensus 736 ~~~~~ 740 (793)
T PLN00181 736 HKAFP 740 (793)
T ss_pred ECCCC
Confidence 76543
No 100
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=92.22 E-value=0.62 Score=44.33 Aligned_cols=107 Identities=23% Similarity=0.166 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhchhhHhHHHHhhcHHHHhh-------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcc
Q 007111 472 ESKMAALIRKNGILEGQLAAALVNREAAEK-------NFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSL 544 (617)
Q Consensus 472 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~ 544 (617)
...+.++++++.+||.||++++.+++..++ .+....+..++||++.....++++.+.+|+.-+ +...+...+
T Consensus 19 ~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~v-L~~~~~~~~ 97 (160)
T PF13094_consen 19 SFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPV-LQLDDSGVL 97 (160)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh-hcccccccc
Confidence 345667888999999999977766665554 444556677777777777777887777774322 222222222
Q ss_pred cccccC-----------CCcchhhhHHHHHHHHHHHHHhhhhhccchh
Q 007111 545 SNIVHS-----------DNVRLEHDVAFLKAVLDDTQKELHSTRGVLA 581 (617)
Q Consensus 545 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (617)
+-.+.+ .+..+ +=.-|+.++...++-|+|-++=++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l--~d~el~~l~~ql~~hl~s~~~n~~ 143 (160)
T PF13094_consen 98 ELPELPQKSLLEASESRFAPTL--CDEELLPLLKQLNKHLESMQNNLQ 143 (160)
T ss_pred ccccccccccccccccccCccc--chHHHHHHHHHHHHHHHHHHccHH
Confidence 221211 23334 123456666666687887777654
No 101
>PRK02889 tolB translocation protein TolB; Provisional
Probab=92.09 E-value=22 Score=39.18 Aligned_cols=148 Identities=12% Similarity=0.045 Sum_probs=77.4
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEEC-CEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcc
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 151 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~-~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~ 151 (617)
..+|++|+.+..=..+. ..+..-. .....-+ ..|++....++ ..++|.+|..+....++.. -. ....
T Consensus 220 ~~I~~~dl~~g~~~~l~---~~~g~~~-~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~---~~-~~~~ 287 (427)
T PRK02889 220 PVVYVHDLATGRRRVVA---NFKGSNS-APAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQ---SS-GIDT 287 (427)
T ss_pred cEEEEEECCCCCEEEee---cCCCCcc-ceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCC---CC-CCCc
Confidence 46999999888655554 2221111 1112223 45655444333 3679999998887776631 11 1111
Q ss_pred cEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEE
Q 007111 152 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFD 231 (617)
Q Consensus 152 h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yD 231 (617)
.....-+++.|++.....+ ...+|.+|..++....+...+ ......+....+..|+......+ ...++++|
T Consensus 288 ~~~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g~~~~lt~~g---~~~~~~~~SpDG~~Ia~~s~~~g---~~~I~v~d 358 (427)
T PRK02889 288 EPFFSPDGRSIYFTSDRGG---APQIYRMPASGGAAQRVTFTG---SYNTSPRISPDGKLLAYISRVGG---AFKLYVQD 358 (427)
T ss_pred CeEEcCCCCEEEEEecCCC---CcEEEEEECCCCceEEEecCC---CCcCceEECCCCCEEEEEEccCC---cEEEEEEE
Confidence 2223335564554432222 246999998888777765321 11111122222445554443221 13689999
Q ss_pred CCCCcEEEee
Q 007111 232 ILKGEWSVAI 241 (617)
Q Consensus 232 l~~~~W~~l~ 241 (617)
+.+.....+.
T Consensus 359 ~~~g~~~~lt 368 (427)
T PRK02889 359 LATGQVTALT 368 (427)
T ss_pred CCCCCeEEcc
Confidence 9888877664
No 102
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=91.88 E-value=20 Score=38.25 Aligned_cols=252 Identities=15% Similarity=0.175 Sum_probs=119.7
Q ss_pred EEEecCCCCCccce--EEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEE
Q 007111 2 IVVGGESGNGLLDD--VQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFD 79 (617)
Q Consensus 2 ~V~GG~~~~~~~~~--v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd 79 (617)
+++|+... +.... ++.||..+.++..+..... . ..+. ..+.-.-++.||+..... .....-..|.++
T Consensus 2 ~~vgsy~~-~~~~gI~~~~~d~~~g~l~~~~~~~~-~-------~~Ps-~l~~~~~~~~LY~~~e~~-~~~g~v~~~~i~ 70 (345)
T PF10282_consen 2 LYVGSYTN-GKGGGIYVFRFDEETGTLTLVQTVAE-G-------ENPS-WLAVSPDGRRLYVVNEGS-GDSGGVSSYRID 70 (345)
T ss_dssp EEEEECCS-SSSTEEEEEEEETTTTEEEEEEEEEE-S-------SSEC-CEEE-TTSSEEEEEETTS-STTTEEEEEEEE
T ss_pred EEEEcCCC-CCCCcEEEEEEcCCCCCceEeeeecC-C-------CCCc-eEEEEeCCCEEEEEEccc-cCCCCEEEEEEC
Confidence 46777654 22233 4556668999987764210 0 0111 112222366888886542 112223455556
Q ss_pred CCCCcEEEeeccCCCC-CCcceeEEEE-EC-CEEEEEeecCCCCCccCeEEEEECCCCc-EEEe------ecCCCCC---
Q 007111 80 TETECWSVVEAKGDIP-VARSGHTVVR-AS-SVLILFGGEDGKRRKLNDLHMFDLKSLT-WLPL------HCTGTGP--- 146 (617)
Q Consensus 80 ~~t~~W~~~~~~g~~P-~~R~~~s~~~-~~-~~IYv~GG~~~~~~~~~~v~~yD~~t~~-W~~l------~~~g~~P--- 146 (617)
..+.+.+.+.. .+ .....+.++. -+ ..+|+. .+. ...+.+|++..+. -... ...++-|
T Consensus 71 ~~~g~L~~~~~---~~~~g~~p~~i~~~~~g~~l~va-ny~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq 141 (345)
T PF10282_consen 71 PDTGTLTLLNS---VPSGGSSPCHIAVDPDGRFLYVA-NYG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQ 141 (345)
T ss_dssp TTTTEEEEEEE---EEESSSCEEEEEECTTSSEEEEE-ETT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTT
T ss_pred CCcceeEEeee---eccCCCCcEEEEEecCCCEEEEE-Ecc-----CCeEEEEEccCCcccceeeeecccCCCCCccccc
Confidence 66578877763 33 2333233333 23 355554 222 3467888887642 2111 0011211
Q ss_pred CCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCC
Q 007111 147 SPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKK 222 (617)
Q Consensus 147 ~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~ 222 (617)
..-.-|.+... +++++|+.. .. .+.|+.|+..... .........++-.--.|....- +..+|++.-.+
T Consensus 142 ~~~h~H~v~~~pdg~~v~v~d-lG----~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s--- 213 (345)
T PF10282_consen 142 EGPHPHQVVFSPDGRFVYVPD-LG----ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS--- 213 (345)
T ss_dssp SSTCEEEEEE-TTSSEEEEEE-TT----TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT---
T ss_pred ccccceeEEECCCCCEEEEEe-cC----CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC---
Confidence 22333455544 456576653 11 3568888886655 6553322111111112322222 45899997654
Q ss_pred ccceEEEEECC--CCcEEEeecCCCC--CCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 223 RHAETLIFDIL--KGEWSVAITSPSS--SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 223 ~~~~v~~yDl~--~~~W~~l~~~~~~--~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
+.+.+|+.. ...|+.+...+.. ........+.+.+. .+..+||+.-.. .+.|.+|++..
T Consensus 214 --~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~is-pdg~~lyvsnr~----~~sI~vf~~d~ 276 (345)
T PF10282_consen 214 --NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAIS-PDGRFLYVSNRG----SNSISVFDLDP 276 (345)
T ss_dssp --TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE--TTSSEEEEEECT----TTEEEEEEECT
T ss_pred --CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEe-cCCCEEEEEecc----CCEEEEEEEec
Confidence 345555544 6666665543222 12222234444444 345677775432 45788888843
No 103
>PRK13684 Ycf48-like protein; Provisional
Probab=91.77 E-value=21 Score=38.17 Aligned_cols=181 Identities=14% Similarity=0.143 Sum_probs=87.2
Q ss_pred EEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEEC-CEEEEEeecCCCCCccCeEEEE
Q 007111 51 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDLHMF 129 (617)
Q Consensus 51 s~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~-~~IYv~GG~~~~~~~~~~v~~y 129 (617)
++...++..|+.|.. ..+++=.-.-.+|+.+......|. ..+.+..++ +.+|+.|.. ..+++-
T Consensus 94 ~v~~~~~~~~~~G~~-------g~i~~S~DgG~tW~~~~~~~~~~~--~~~~i~~~~~~~~~~~g~~-------G~i~~S 157 (334)
T PRK13684 94 SISFKGDEGWIVGQP-------SLLLHTTDGGKNWTRIPLSEKLPG--SPYLITALGPGTAEMATNV-------GAIYRT 157 (334)
T ss_pred eeEEcCCcEEEeCCC-------ceEEEECCCCCCCeEccCCcCCCC--CceEEEEECCCcceeeecc-------ceEEEE
Confidence 333345566766532 134443334568998863211222 222333333 455655432 234554
Q ss_pred ECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEE-ECCCCcEEEeecCCCCCCCCcceEEEEE
Q 007111 130 DLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSL-DFETMIWTRIKIRGFHPSPRAGCCGVLC 208 (617)
Q Consensus 130 D~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~y-D~~t~~W~~~~~~g~~P~~R~~ha~v~~ 208 (617)
+-.-.+|+.+. .+..-.-+.+....+..++++|.. + .++.- |....+|+.+.. +..+..++++..
T Consensus 158 ~DgG~tW~~~~----~~~~g~~~~i~~~~~g~~v~~g~~-G-----~i~~s~~~gg~tW~~~~~----~~~~~l~~i~~~ 223 (334)
T PRK13684 158 TDGGKNWEALV----EDAAGVVRNLRRSPDGKYVAVSSR-G-----NFYSTWEPGQTAWTPHQR----NSSRRLQSMGFQ 223 (334)
T ss_pred CCCCCCceeCc----CCCcceEEEEEECCCCeEEEEeCC-c-----eEEEEcCCCCCeEEEeeC----CCcccceeeeEc
Confidence 44567899874 122223344444555534444433 2 24433 444467998854 334444555554
Q ss_pred -CCEEEEEecCCCCCccceEEEEE-C-CCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCC
Q 007111 209 -GTKWYIAGGGSRKKRHAETLIFD-I-LKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI 273 (617)
Q Consensus 209 -~~~IyI~GG~s~~~~~~~v~~yD-l-~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~ 273 (617)
++.+|++|... ..++. . .-.+|+.+..+. .....+...+.+. ..+.++++|..
T Consensus 224 ~~g~~~~vg~~G-------~~~~~s~d~G~sW~~~~~~~---~~~~~~l~~v~~~--~~~~~~~~G~~ 279 (334)
T PRK13684 224 PDGNLWMLARGG-------QIRFNDPDDLESWSKPIIPE---ITNGYGYLDLAYR--TPGEIWAGGGN 279 (334)
T ss_pred CCCCEEEEecCC-------EEEEccCCCCCccccccCCc---cccccceeeEEEc--CCCCEEEEcCC
Confidence 67788887532 22332 2 335899754211 1111222222222 23568887764
No 104
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.75 E-value=2.7 Score=41.08 Aligned_cols=139 Identities=20% Similarity=0.271 Sum_probs=93.2
Q ss_pred chHHHHHHHHHHHHHHHhchhh------HhHHHH-hhcHHHHhhhhhh--------------hhhhHHHHHHHHHHHHHH
Q 007111 465 SSIYQFYESKMAALIRKNGILE------GQLAAA-LVNREAAEKNFSS--------------VLKSRQEMEKKLADSLKE 523 (617)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~------~q~~~~-~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~ 523 (617)
....+...+++..+..+.+.-| ++++-| |+++.+-|=.+.- .-+=+.++|.+++..-.+
T Consensus 32 dr~v~~l~ksf~~~~~E~~kee~~y~ea~ri~Ka~L~~Lsq~E~~mlKtqrv~e~nlre~e~~~q~k~Eiersi~~a~~k 111 (222)
T KOG3215|consen 32 DRLVEHLEKSFVLAKAEIEKEEKEYSEAKRIRKALLASLSQDEPSMLKTQRVIEMNLREIENLVQKKLEIERSIQKARNK 111 (222)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666665555555 566655 6666666543221 123456788888888899
Q ss_pred HHHHHHHHhhhHHh---HHhhhcccccccCCCcchh--hhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHH
Q 007111 524 MELLKEKLAGLELA---QEEANSLSNIVHSDNVRLE--HDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLK 598 (617)
Q Consensus 524 ~~~lkek~~~~e~~---qe~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (617)
+|+||-.|+.++.. |+|+-.|+|++..--.|-| .++--||-++++..-+=-||-.-|-+-| .-|++=+-+-|=-
T Consensus 112 ie~lkkql~eaKi~r~nrqe~~~l~kvis~~p~RsEt~k~l~el~keleel~~~~~s~~~klelrR-kqf~~lm~~~~el 190 (222)
T KOG3215|consen 112 IELLKKQLHEAKIVRLNRQEYSALSKVISDCPARSETDKDLNELKKELEELDDLNNSTETKLELRR-KQFKYLMVSTEEL 190 (222)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHh-hcchHHHhhHHHH
Confidence 99999999998874 5999999999999899998 4577888888887777777766665533 4455544333222
Q ss_pred HHHhhhhc
Q 007111 599 QRLQSLEN 606 (617)
Q Consensus 599 ~~~~~~~~ 606 (617)
| +.||+
T Consensus 191 Q--~amed 196 (222)
T KOG3215|consen 191 Q--CAMED 196 (222)
T ss_pred H--hhhhh
Confidence 2 35654
No 105
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.70 E-value=1.8 Score=51.38 Aligned_cols=79 Identities=38% Similarity=0.367 Sum_probs=54.7
Q ss_pred HHHHHHh----hhHHhHHhhhcccccccCCCc-----------------chhhhHHHHHHHHHHHHHhhhhhccchhhhc
Q 007111 526 LLKEKLA----GLELAQEEANSLSNIVHSDNV-----------------RLEHDVAFLKAVLDDTQKELHSTRGVLAGER 584 (617)
Q Consensus 526 ~lkek~~----~~e~~qe~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (617)
.|||... .+|.+|++-++|++...+.+- .+..++.-.+-=++-++|||--+-|-++.--
T Consensus 361 ~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~ 440 (1174)
T KOG0933|consen 361 KLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATAS 440 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhh
Confidence 3555543 467788889999999998876 2233344444456667777777766666544
Q ss_pred cccc-------cchhhHHHHHHHHhhh
Q 007111 585 ARAF-------QLQVEVFHLKQRLQSL 604 (617)
Q Consensus 585 ~~~~-------~~~~~~~~~~~~~~~~ 604 (617)
+|+- ++|.||.+|+.+|+++
T Consensus 441 ~~~~~~~~~ld~~q~eve~l~~~l~~l 467 (1174)
T KOG0933|consen 441 AEYVKDIEELDALQNEVEKLKKRLQSL 467 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4433 5789999999999987
No 106
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=91.66 E-value=20 Score=37.84 Aligned_cols=221 Identities=14% Similarity=0.123 Sum_probs=95.6
Q ss_pred CCCcEEEccccccCCCCCCCCCCC-cccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcce
Q 007111 22 DRFSWTAASSKLYLSPSSLPLKIP-ACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSG 100 (617)
Q Consensus 22 ~t~~W~~l~~~~~~~p~~~~~~~p-~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~ 100 (617)
.-.+|...... ...+ .....++...++..|++|.. .-++.-.-.-.+|+.++....+ +...
T Consensus 45 GG~tW~~~~~~---------~~~~~~~~l~~I~f~~~~g~ivG~~-------g~ll~T~DgG~tW~~v~l~~~l--pgs~ 106 (302)
T PF14870_consen 45 GGKTWQPVSLD---------LDNPFDYHLNSISFDGNEGWIVGEP-------GLLLHTTDGGKTWERVPLSSKL--PGSP 106 (302)
T ss_dssp TTSS-EE--------------S-----EEEEEEEETTEEEEEEET-------TEEEEESSTTSS-EE----TT---SS-E
T ss_pred CCccccccccC---------CCccceeeEEEEEecCCceEEEcCC-------ceEEEecCCCCCcEEeecCCCC--CCCe
Confidence 34569887642 1112 11234455568889988742 1244444456789998743223 3333
Q ss_pred eEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEE
Q 007111 101 HTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYS 179 (617)
Q Consensus 101 ~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~ 179 (617)
+.+..+ ++.++++|.. ..+|+-.-.-.+|+.+.. +..-.-..+....+..++++|... . -+..
T Consensus 107 ~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~----~~~gs~~~~~r~~dG~~vavs~~G-~----~~~s 170 (302)
T PF14870_consen 107 FGITALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVS----ETSGSINDITRSSDGRYVAVSSRG-N----FYSS 170 (302)
T ss_dssp EEEEEEETTEEEEEETT---------EEEESSTTSSEEEEE-----S----EEEEEE-TTS-EEEEETTS-S----EEEE
T ss_pred eEEEEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEccc----CCcceeEeEEECCCCcEEEEECcc-c----EEEE
Confidence 444444 5577777532 235554445668998742 111111123333444355555433 1 2346
Q ss_pred EECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEE--CCCCcEEEeecCCCCCCCCCcceEE
Q 007111 180 LDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFD--ILKGEWSVAITSPSSSVTSNKGFTL 256 (617)
Q Consensus 180 yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yD--l~~~~W~~l~~~~~~~p~~r~~~s~ 256 (617)
.|+....|...... ..|.-.++... ++.++++. ..+ .+.+-+ -....|.... .|....++..
T Consensus 171 ~~~G~~~w~~~~r~----~~~riq~~gf~~~~~lw~~~-~Gg-----~~~~s~~~~~~~~w~~~~-----~~~~~~~~~~ 235 (302)
T PF14870_consen 171 WDPGQTTWQPHNRN----SSRRIQSMGFSPDGNLWMLA-RGG-----QIQFSDDPDDGETWSEPI-----IPIKTNGYGI 235 (302)
T ss_dssp E-TT-SS-EEEE------SSS-EEEEEE-TTS-EEEEE-TTT-----EEEEEE-TTEEEEE---B------TTSS--S-E
T ss_pred ecCCCccceEEccC----ccceehhceecCCCCEEEEe-CCc-----EEEEccCCCCcccccccc-----CCcccCceee
Confidence 68888889988763 44555555555 66777765 211 244444 3345677732 2222334443
Q ss_pred EEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCccccccc
Q 007111 257 VLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMGRR 296 (617)
Q Consensus 257 v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W~~~w~ 296 (617)
.-+.....+.+++.||.. .+++-.=....|.+...
T Consensus 236 ld~a~~~~~~~wa~gg~G-----~l~~S~DgGktW~~~~~ 270 (302)
T PF14870_consen 236 LDLAYRPPNEIWAVGGSG-----TLLVSTDGGKTWQKDRV 270 (302)
T ss_dssp EEEEESSSS-EEEEESTT------EEEESSTTSS-EE-GG
T ss_pred EEEEecCCCCEEEEeCCc-----cEEEeCCCCccceECcc
Confidence 334444568899999974 34444444556765433
No 107
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.58 E-value=6.8 Score=43.05 Aligned_cols=212 Identities=15% Similarity=0.200 Sum_probs=106.4
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCc-EEEeeccCCCCCCccee-EEEEECCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETEC-WSVVEAKGDIPVARSGH-TVVRASSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~g~~P~~R~~~-s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
+|+++.+|+..+ .|-+||..+.. -+.+. ...++... -.+..++.+++.|+-+.. +-.+|..+
T Consensus 79 DG~LlaaGD~sG------~V~vfD~k~r~iLR~~~----ah~apv~~~~f~~~d~t~l~s~sDd~v------~k~~d~s~ 142 (487)
T KOG0310|consen 79 DGRLLAAGDESG------HVKVFDMKSRVILRQLY----AHQAPVHVTKFSPQDNTMLVSGSDDKV------VKYWDLST 142 (487)
T ss_pred CCeEEEccCCcC------cEEEeccccHHHHHHHh----hccCceeEEEecccCCeEEEecCCCce------EEEEEcCC
Confidence 689999988632 58888855522 11111 01111111 123457788888865432 33445444
Q ss_pred CcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCC-cEEEeecCCCCCCCCcceEEEEE--CC
Q 007111 134 LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM-IWTRIKIRGFHPSPRAGCCGVLC--GT 210 (617)
Q Consensus 134 ~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~-~W~~~~~~g~~P~~R~~ha~v~~--~~ 210 (617)
.. ......+.--.-|++ ++....+. |++.|||++. |-.||+.+. .|..--..| .|.. .++++ +.
T Consensus 143 a~-v~~~l~~htDYVR~g-~~~~~~~h-ivvtGsYDg~-----vrl~DtR~~~~~v~elnhg---~pVe--~vl~lpsgs 209 (487)
T KOG0310|consen 143 AY-VQAELSGHTDYVRCG-DISPANDH-IVVTGSYDGK-----VRLWDTRSLTSRVVELNHG---CPVE--SVLALPSGS 209 (487)
T ss_pred cE-EEEEecCCcceeEee-ccccCCCe-EEEecCCCce-----EEEEEeccCCceeEEecCC---Ccee--eEEEcCCCC
Confidence 44 233333332333322 12223456 9999999975 888888766 554332222 2222 23333 35
Q ss_pred EEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 211 KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 211 ~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.|.-.||. .+-++|+.++.=... ....-....++-.+. .++.-++-||.++ .|-+||..+-+
T Consensus 210 ~iasAgGn-------~vkVWDl~~G~qll~-----~~~~H~KtVTcL~l~--s~~~rLlS~sLD~----~VKVfd~t~~K 271 (487)
T KOG0310|consen 210 LIASAGGN-------SVKVWDLTTGGQLLT-----SMFNHNKTVTCLRLA--SDSTRLLSGSLDR----HVKVFDTTNYK 271 (487)
T ss_pred EEEEcCCC-------eEEEEEecCCceehh-----hhhcccceEEEEEee--cCCceEeeccccc----ceEEEEccceE
Confidence 56666663 355666653321111 000011222222222 2335567788765 47888855433
Q ss_pred cccccc------cccCccCCceeeeccCCC
Q 007111 291 SSMGRR------STPNAKGPGQLLFEKRSS 314 (617)
Q Consensus 291 W~~~w~------~~~~~~~~~v~vfGG~~~ 314 (617)
-...|. .++...+++.++.|...+
T Consensus 272 vv~s~~~~~pvLsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 272 VVHSWKYPGPVLSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred EEEeeecccceeeEEecCCCceEEEecccc
Confidence 222232 233445778888987744
No 108
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=91.51 E-value=14 Score=35.74 Aligned_cols=145 Identities=14% Similarity=0.141 Sum_probs=66.7
Q ss_pred CEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEEC-CEEEEEeecCCCCCccCeEEEEECCCCc
Q 007111 57 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDLHMFDLKSLT 135 (617)
Q Consensus 57 ~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~-~~IYv~GG~~~~~~~~~~v~~yD~~t~~ 135 (617)
+.+++.|+.+ ..+..||+.+......- . .....-.++.... +.+++.|+.+ ..+.+||+.+.+
T Consensus 105 ~~~~~~~~~~------~~i~~~~~~~~~~~~~~---~-~~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~~~ 168 (289)
T cd00200 105 GRILSSSSRD------KTIKVWDVETGKCLTTL---R-GHTDWVNSVAFSPDGTFVASSSQD------GTIKLWDLRTGK 168 (289)
T ss_pred CCEEEEecCC------CeEEEEECCCcEEEEEe---c-cCCCcEEEEEEcCcCCEEEEEcCC------CcEEEEEccccc
Confidence 4566666532 35888998755432221 1 1111122233333 3444444312 358889987543
Q ss_pred E-EEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC-CEEE
Q 007111 136 W-LPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCG-TKWY 213 (617)
Q Consensus 136 W-~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~-~~Iy 213 (617)
- ..+. ... ..-.++....+...+++|+.+ ..+..||+.+........ .....-.++.... +.++
T Consensus 169 ~~~~~~----~~~-~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~ 234 (289)
T cd00200 169 CVATLT----GHT-GEVNSVAFSPDGEKLLSSSSD-----GTIKLWDLSTGKCLGTLR----GHENGVNSVAFSPDGYLL 234 (289)
T ss_pred cceeEe----cCc-cccceEEECCCcCEEEEecCC-----CcEEEEECCCCceecchh----hcCCceEEEEEcCCCcEE
Confidence 2 2221 111 111233333333245555553 348899987654433221 1111223334333 4555
Q ss_pred EEecCCCCCccceEEEEECCCCc
Q 007111 214 IAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 214 I~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
+.++.. ..+++||+.+..
T Consensus 235 ~~~~~~-----~~i~i~~~~~~~ 252 (289)
T cd00200 235 ASGSED-----GTIRVWDLRTGE 252 (289)
T ss_pred EEEcCC-----CcEEEEEcCCce
Confidence 555423 348888887543
No 109
>PRK11637 AmiB activator; Provisional
Probab=91.12 E-value=2.5 Score=46.78 Aligned_cols=84 Identities=14% Similarity=0.105 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhc---ccc
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS---LSN 546 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~---~~~ 546 (617)
..+.++..+..+...|+.||..+.....++++.+..+-+...++++++++..++++.+++.++..-.+.-...+ |.-
T Consensus 65 ~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~g~~~~l~v 144 (428)
T PRK11637 65 QQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQGEHTGLQL 144 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence 33445555555555566666666666666666666665566666666666666666666666655555544333 334
Q ss_pred cccCCCc
Q 007111 547 IVHSDNV 553 (617)
Q Consensus 547 ~~~~~~~ 553 (617)
+..+++.
T Consensus 145 Ll~a~~~ 151 (428)
T PRK11637 145 ILSGEES 151 (428)
T ss_pred HhcCCCh
Confidence 5666655
No 110
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=91.07 E-value=26 Score=37.95 Aligned_cols=148 Identities=11% Similarity=0.046 Sum_probs=77.5
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 93 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~ 93 (617)
..+++||+.+.....+... .. .....+....+..|++..... ....+|.+|+.+.....+....
T Consensus 214 ~~i~v~d~~~g~~~~~~~~----------~~-~~~~~~~spDg~~l~~~~~~~----~~~~i~~~d~~~~~~~~l~~~~- 277 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASF----------PG-MNGAPAFSPDGSKLAVSLSKD----GNPDIYVMDLDGKQLTRLTNGP- 277 (417)
T ss_pred cEEEEEECCCCCEEEeecC----------CC-CccceEECCCCCEEEEEECCC----CCccEEEEECCCCCEEECCCCC-
Confidence 4688889888766555431 11 111111112234565543321 1246999999988877765321
Q ss_pred CCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEE-ECCcEEEEEccCCCCC
Q 007111 94 IPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL-YDDKNLLIFGGSSKSK 172 (617)
Q Consensus 94 ~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~-~~~~~LyV~GG~~~~~ 172 (617)
...........+.+|++.....+ ...+|++|..+..+..+...+ .+....+. -+++ .+++.....
T Consensus 278 --~~~~~~~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~-~i~~~~~~~-- 343 (417)
T TIGR02800 278 --GIDTEPSWSPDGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGD-LIAFVHREG-- 343 (417)
T ss_pred --CCCCCEEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCC-EEEEEEccC--
Confidence 11111111112335555433322 247999999998888774221 12222233 3455 455544432
Q ss_pred CCCeEEEEECCCCcEEEee
Q 007111 173 TLNDLYSLDFETMIWTRIK 191 (617)
Q Consensus 173 ~~n~v~~yD~~t~~W~~~~ 191 (617)
....++.+|+.++.+..+.
T Consensus 344 ~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 344 GGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred CceEEEEEeCCCCCeEEcc
Confidence 2346999999887776554
No 111
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=91.02 E-value=0.98 Score=51.25 Aligned_cols=62 Identities=21% Similarity=0.341 Sum_probs=46.4
Q ss_pred CCchHHH-HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Q 007111 463 GPSSIYQ-FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEM 524 (617)
Q Consensus 463 ~~~~~~~-~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (617)
|..++.| .-=+|+-+-++.+++|+..+..-...++.-+..|-+++..++++||.+.+.++.+
T Consensus 466 SK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~ 528 (961)
T KOG4673|consen 466 SKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKH 528 (961)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4444443 4456677778888888888888888888888888888999999988877655544
No 112
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.92 E-value=1.8 Score=43.13 Aligned_cols=81 Identities=22% Similarity=0.217 Sum_probs=50.3
Q ss_pred HHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcch
Q 007111 476 AALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRL 555 (617)
Q Consensus 476 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~ 555 (617)
-.+..+...|+.||+++.+.+.++..+.. ....+|+.++++..+..+.|+++.+.+...-++ +
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~--------------~ 151 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIV--------------A 151 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H
Confidence 34445556777777777777777666544 455667777777766666666666655332222 5
Q ss_pred hhhHHHHHHHHHHHHHhh
Q 007111 556 EHDVAFLKAVLDDTQKEL 573 (617)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~ 573 (617)
..++..|+|-+++.|++.
T Consensus 152 ~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 152 QKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556666666666666644
No 113
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=90.83 E-value=8.4 Score=34.89 Aligned_cols=85 Identities=15% Similarity=0.109 Sum_probs=55.3
Q ss_pred EECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCC-CccceEEEEE-CC
Q 007111 156 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK-KRHAETLIFD-IL 233 (617)
Q Consensus 156 ~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~-~~~~~v~~yD-l~ 233 (617)
.++|- +|-..-. .....+.|..||..+.+|+.+..............++.++|++-++.-.... ...-++|+++ ..
T Consensus 3 cinGv-ly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 3 CINGV-LYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred EECcE-EEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 34555 4443333 3344577999999999999887621223445566777789998887654332 2346789885 55
Q ss_pred CCcEEEeec
Q 007111 234 KGEWSVAIT 242 (617)
Q Consensus 234 ~~~W~~l~~ 242 (617)
+..|+....
T Consensus 81 k~~Wsk~~~ 89 (129)
T PF08268_consen 81 KQEWSKKHI 89 (129)
T ss_pred cceEEEEEE
Confidence 678998754
No 114
>PRK03629 tolB translocation protein TolB; Provisional
Probab=90.32 E-value=33 Score=37.90 Aligned_cols=146 Identities=7% Similarity=-0.067 Sum_probs=74.8
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECC-EEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcc
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 151 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~-~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~ 151 (617)
..+|.+|+.+.....+.. .+..-.. ....-++ .|++.....+ ...+|.+|+.+....++... .....
T Consensus 267 ~~I~~~d~~tg~~~~lt~---~~~~~~~-~~wSPDG~~I~f~s~~~g----~~~Iy~~d~~~g~~~~lt~~----~~~~~ 334 (429)
T PRK03629 267 LNLYVMDLASGQIRQVTD---GRSNNTE-PTWFPDSQNLAYTSDQAG----RPQVYKVNINGGAPQRITWE----GSQNQ 334 (429)
T ss_pred cEEEEEECCCCCEEEccC---CCCCcCc-eEECCCCCEEEEEeCCCC----CceEEEEECCCCCeEEeecC----CCCcc
Confidence 369999999988777652 1111111 1112234 4444332221 25799999988877776321 11112
Q ss_pred cEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEE
Q 007111 152 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFD 231 (617)
Q Consensus 152 h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yD 231 (617)
.....-+++.|++.+...+ ...++.+|+.++.+..+.... .-...+.. -+++.+++.+..+. ...+++.+
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g---~~~I~~~dl~~g~~~~Lt~~~----~~~~p~~S-pDG~~i~~~s~~~~--~~~l~~~~ 404 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGG---QQHIAKQDLATGGVQVLTDTF----LDETPSIA-PNGTMVIYSSSQGM--GSVLNLVS 404 (429)
T ss_pred CEEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEeCCCC----CCCCceEC-CCCCEEEEEEcCCC--ceEEEEEE
Confidence 2222335664544443322 246999999999988775321 01111222 35555555543322 23466777
Q ss_pred CCCCcEEEe
Q 007111 232 ILKGEWSVA 240 (617)
Q Consensus 232 l~~~~W~~l 240 (617)
++...=..+
T Consensus 405 ~~G~~~~~l 413 (429)
T PRK03629 405 TDGRFKARL 413 (429)
T ss_pred CCCCCeEEC
Confidence 655443443
No 115
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=90.27 E-value=0.34 Score=49.21 Aligned_cols=139 Identities=24% Similarity=0.311 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHhchhhHhHHHH-------hhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHh
Q 007111 468 YQFYESKMAALIRKNGILEGQLAAA-------LVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEE 540 (617)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~q~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~ 540 (617)
....+.+++.|-++...||..|+.+ ++-++.|++.+..+-+.+..||.+......-++.|..+|..++..-++
T Consensus 31 ~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee 110 (237)
T PF00261_consen 31 AEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEE 110 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888888888887776655 456666667666677777777777777777888888888877777776
Q ss_pred hhccc-------ccccCCCcchhhhHHHHHHHHHHHHHhhhhhccchh---------hhccccccchhhHHHHHHHHhhh
Q 007111 541 ANSLS-------NIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLA---------GERARAFQLQVEVFHLKQRLQSL 604 (617)
Q Consensus 541 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 604 (617)
+..-. +++..+--|.|.-+.-+-.-+.+++.+|+.+..-|- .+|--. +.-.+-+|.++|...
T Consensus 111 ~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~--~e~~i~~L~~~lkea 188 (237)
T PF00261_consen 111 AERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDE--YEEKIRDLEEKLKEA 188 (237)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH--HHHHHHHHHHHHHHH
Confidence 66422 223333333333345556667788888888877762 222222 234567888999888
Q ss_pred hccC
Q 007111 605 ENRA 608 (617)
Q Consensus 605 ~~~~ 608 (617)
|+|+
T Consensus 189 E~Ra 192 (237)
T PF00261_consen 189 ENRA 192 (237)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8886
No 116
>PRK04043 tolB translocation protein TolB; Provisional
Probab=90.14 E-value=34 Score=37.81 Aligned_cols=190 Identities=13% Similarity=0.062 Sum_probs=102.6
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECC-EEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGK-KVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 93 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~-~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~ 93 (617)
+++++|+.+++=..+... +.........-++ +|++.-...+ ..++|.+|..+..++.+..
T Consensus 214 ~Iyv~dl~tg~~~~lt~~------------~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~--- 274 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASS------------QGMLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITN--- 274 (419)
T ss_pred EEEEEECCCCcEEEEecC------------CCcEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEccc---
Confidence 788888887765555431 1111111122233 5554433211 3589999999999988852
Q ss_pred CCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCC-
Q 007111 94 IPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK- 172 (617)
Q Consensus 94 ~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~- 172 (617)
.+..-....-...+..||+...+.+ ...+|++|+.+...+++...+ .+. ....-+++.|+.........
T Consensus 275 ~~~~d~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g-----~~~-~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 275 YPGIDVNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHG-----KNN-SSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred CCCccCccEECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccCC-----CcC-ceECCCCCEEEEEEcCCCccc
Confidence 2221111122223457777765432 357999999999998774222 122 23333566454444322111
Q ss_pred --CCCeEEEEECCCCcEEEeecCCCCCCCCcc-eEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEee
Q 007111 173 --TLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 241 (617)
Q Consensus 173 --~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~-ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~ 241 (617)
...+++.+|+.++.+..+...+ ... .+....+..|++.... .....++.++++...=..++
T Consensus 345 ~~~~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~---~~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 345 GKNTFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYL---GNQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred CCCCcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEcc---CCcEEEEEEecCCCeeEEee
Confidence 2357999999999998876531 111 2222223445555332 22246888888776544444
No 117
>PRK11637 AmiB activator; Provisional
Probab=89.68 E-value=1.6 Score=48.32 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=22.8
Q ss_pred HHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 007111 475 MAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLA 532 (617)
Q Consensus 475 ~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~ 532 (617)
++++..+...++.++..+...++.+++.+..+-+....++.+++.+.++++.|+++++
T Consensus 56 i~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~ 113 (428)
T PRK11637 56 IAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIA 113 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444333333333333333333333333333333
No 118
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=89.53 E-value=1.5 Score=54.50 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHH
Q 007111 557 HDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLK 598 (617)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (617)
.++.-++.-++.+++++...+.-+..-+.+...++-++..++
T Consensus 441 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~ 482 (1164)
T TIGR02169 441 EEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVE 482 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444433333333333333333333333
No 119
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.39 E-value=22 Score=36.72 Aligned_cols=111 Identities=18% Similarity=0.149 Sum_probs=73.2
Q ss_pred EEEE-ECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEE
Q 007111 102 TVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSL 180 (617)
Q Consensus 102 s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~y 180 (617)
.... .++.+|.--|..+. +.+..||+.+.+-.... ++|..-++=+++.++++ ||..-=.+ ...++|
T Consensus 49 GL~~~~~g~LyESTG~yG~----S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~-l~qLTWk~-----~~~f~y 115 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQ----SSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDK-LYQLTWKE-----GTGFVY 115 (264)
T ss_dssp EEEEEETTEEEEEECSTTE----EEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTE-EEEEESSS-----SEEEEE
T ss_pred cEEecCCCEEEEeCCCCCc----EEEEEEECCCCcEEEEE---ECCccccceeEEEECCE-EEEEEecC-----CeEEEE
Confidence 3444 56899998887664 67999999999865443 67888888899999999 77764332 358999
Q ss_pred ECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCc
Q 007111 181 DFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 181 D~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
|+.+- ..+... +-+.-+-.++..+..+|+--|. +.++.+|+.+.+
T Consensus 116 d~~tl--~~~~~~---~y~~EGWGLt~dg~~Li~SDGS------~~L~~~dP~~f~ 160 (264)
T PF05096_consen 116 DPNTL--KKIGTF---PYPGEGWGLTSDGKRLIMSDGS------SRLYFLDPETFK 160 (264)
T ss_dssp ETTTT--EEEEEE---E-SSS--EEEECSSCEEEE-SS------SEEEEE-TTT-S
T ss_pred ccccc--eEEEEE---ecCCcceEEEcCCCEEEEECCc------cceEEECCcccc
Confidence 99764 344332 3345667778778888888774 468999998754
No 120
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=89.29 E-value=1.6 Score=54.17 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=7.6
Q ss_pred HHHHHHHHHhchhhHhHHHH
Q 007111 473 SKMAALIRKNGILEGQLAAA 492 (617)
Q Consensus 473 ~~~~~~~~~~~~~~~q~~~~ 492 (617)
.++..+-.....++.++..+
T Consensus 677 ~e~~~l~~~~~~l~~~l~~~ 696 (1179)
T TIGR02168 677 REIEELEEKIEELEEKIAEL 696 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 121
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=89.27 E-value=33 Score=37.33 Aligned_cols=206 Identities=17% Similarity=0.164 Sum_probs=106.9
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECC-EEEEEeecCCCC-----CccCeEEEE
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGKR-----RKLNDLHMF 129 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~-~IYv~GG~~~~~-----~~~~~v~~y 129 (617)
+++.++++=. ..++....++++|+.++....-. ++...... ++..++ ..+++...+... .+...++++
T Consensus 134 dg~~la~~~s-~~G~e~~~l~v~Dl~tg~~l~d~----i~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 134 DGKRLAYSLS-DGGSEWYTLRVFDLETGKFLPDG----IENPKFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp TSSEEEEEEE-ETTSSEEEEEEEETTTTEEEEEE----EEEEESEE-EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred CCCEEEEEec-CCCCceEEEEEEECCCCcCcCCc----ccccccce-EEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 5666666532 23344568999999999543322 22222222 444443 444444444322 236789999
Q ss_pred ECCCCcEE--EeecCCCCCCCC--cccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCC-----cEEEeecCCCCCCCC
Q 007111 130 DLKSLTWL--PLHCTGTGPSPR--SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM-----IWTRIKIRGFHPSPR 200 (617)
Q Consensus 130 D~~t~~W~--~l~~~g~~P~~R--~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~-----~W~~~~~~g~~P~~R 200 (617)
...+..-. .+- ..+... +......-++++++|.-... .. .+++|.+|.... .|..+... ..-
T Consensus 208 ~~gt~~~~d~lvf---e~~~~~~~~~~~~~s~d~~~l~i~~~~~-~~-~s~v~~~d~~~~~~~~~~~~~l~~~----~~~ 278 (414)
T PF02897_consen 208 KLGTPQSEDELVF---EEPDEPFWFVSVSRSKDGRYLFISSSSG-TS-ESEVYLLDLDDGGSPDAKPKLLSPR----EDG 278 (414)
T ss_dssp ETTS-GGG-EEEE---C-TTCTTSEEEEEE-TTSSEEEEEEESS-SS-EEEEEEEECCCTTTSS-SEEEEEES----SSS
T ss_pred ECCCChHhCeeEE---eecCCCcEEEEEEecCcccEEEEEEEcc-cc-CCeEEEEeccccCCCcCCcEEEeCC----CCc
Confidence 98877543 221 112222 22222333556444443332 22 578999999875 78887652 222
Q ss_pred cceEEEEECCEEEEEecCCCCCccceEEEEECCCCc---EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCC
Q 007111 201 AGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE---WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP 277 (617)
Q Consensus 201 ~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~---W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~ 277 (617)
..+.+...++.+||.-. .+.....+..+++.... |..+-..+ . .......+.+. +++|++.-=.+ .
T Consensus 279 ~~~~v~~~~~~~yi~Tn--~~a~~~~l~~~~l~~~~~~~~~~~l~~~-~---~~~~l~~~~~~---~~~Lvl~~~~~--~ 347 (414)
T PF02897_consen 279 VEYYVDHHGDRLYILTN--DDAPNGRLVAVDLADPSPAEWWTVLIPE-D---EDVSLEDVSLF---KDYLVLSYREN--G 347 (414)
T ss_dssp -EEEEEEETTEEEEEE---TT-TT-EEEEEETTSTSGGGEEEEEE---S---SSEEEEEEEEE---TTEEEEEEEET--T
T ss_pred eEEEEEccCCEEEEeeC--CCCCCcEEEEecccccccccceeEEcCC-C---CceeEEEEEEE---CCEEEEEEEEC--C
Confidence 23334445999999865 23344678899988765 66432111 1 11112222222 35666544333 2
Q ss_pred CCeEEEEECC
Q 007111 278 SNQVEVLSIE 287 (617)
Q Consensus 278 ~~dV~vyd~~ 287 (617)
...+.++++.
T Consensus 348 ~~~l~v~~~~ 357 (414)
T PF02897_consen 348 SSRLRVYDLD 357 (414)
T ss_dssp EEEEEEEETT
T ss_pred ccEEEEEECC
Confidence 4588899988
No 122
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.99 E-value=8.6 Score=38.11 Aligned_cols=73 Identities=18% Similarity=0.256 Sum_probs=52.2
Q ss_pred chHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 007111 465 SSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELA 537 (617)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~ 537 (617)
.+|-.+|..=...-+..-..|..|+++.-.--+..+|.++.+..--..|..-|+.+.+|++.|+.+++.-+.-
T Consensus 12 ~~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kd 84 (201)
T PF13851_consen 12 QEIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKD 84 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666777777777777777777777777777777777777777777777777766643
No 123
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=88.96 E-value=0.61 Score=39.51 Aligned_cols=78 Identities=32% Similarity=0.461 Sum_probs=64.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhc
Q 007111 505 SVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGER 584 (617)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (617)
+|.+-.+.+|+|++.-.+.+|.+.-||-+.|+--| +-..||.|..-||.+++.-+||||.-|+ |=
T Consensus 2 ~V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e-----------~R~~lE~E~~~l~~~l~~~E~eL~~Lrk----EN 66 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPE-----------ARRSLEKELNELKEKLENNEKELKLLRK----EN 66 (85)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChH-----------HHHHHHHHHHHHHHHhhccHHHHHHHHH----hh
Confidence 35567888999999999999999888888875433 3456889999999999999999999887 88
Q ss_pred cccccchhhHHHH
Q 007111 585 ARAFQLQVEVFHL 597 (617)
Q Consensus 585 ~~~~~~~~~~~~~ 597 (617)
.+.|=|.+=+|-+
T Consensus 67 rK~~~ls~~l~~v 79 (85)
T PF15188_consen 67 RKSMLLSVALFFV 79 (85)
T ss_pred hhhHHHHHHHHHH
Confidence 8888888776644
No 124
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=88.79 E-value=15 Score=37.68 Aligned_cols=137 Identities=18% Similarity=0.269 Sum_probs=0.0
Q ss_pred CcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCC---
Q 007111 45 PACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRR--- 121 (617)
Q Consensus 45 p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~--- 121 (617)
+..+-.|+-..++.+|+.--...+...-+.+.+.+.....|..+.. +-..-....-.+.+++.||+||-....++
T Consensus 189 ~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrf--p~nvHhtnlPFakvgD~l~mFgsERA~~EWE~ 266 (367)
T PF12217_consen 189 RNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRF--PNNVHHTNLPFAKVGDVLYMFGSERAENEWEG 266 (367)
T ss_dssp TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE---TT---SS---EEEETTEEEEEEE-SSTT-SST
T ss_pred cccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccc--cccccccCCCceeeCCEEEEEecccccccccc
Q ss_pred ----------ccCeEEE------EECCCCcEEEeecC---CCCCCCCcccEEEEECCcEE-EEEcc--------------
Q 007111 122 ----------KLNDLHM------FDLKSLTWLPLHCT---GTGPSPRSNHVAALYDDKNL-LIFGG-------------- 167 (617)
Q Consensus 122 ----------~~~~v~~------yD~~t~~W~~l~~~---g~~P~~R~~h~a~~~~~~~L-yV~GG-------------- 167 (617)
+-..+.+ +.++.-+|..+... |..--.-.|-+++++++..| |+|||
T Consensus 267 G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED~~npws~gdN~~ 346 (367)
T PF12217_consen 267 GEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGEDFFNPWSIGDNSR 346 (367)
T ss_dssp T-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-S----TTTTTTT
T ss_pred CCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCcccCCccccccccc
Q ss_pred ---CCCCCCCCeEEEEECC
Q 007111 168 ---SSKSKTLNDLYSLDFE 183 (617)
Q Consensus 168 ---~~~~~~~n~v~~yD~~ 183 (617)
+..+....++|.|.++
T Consensus 347 k~~~~~dGhp~dlY~~rik 365 (367)
T PF12217_consen 347 KAPYKHDGHPADLYCYRIK 365 (367)
T ss_dssp --TTSTT----EEEEEEEE
T ss_pred cCccccCCCCcceEEEEEE
No 125
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=88.25 E-value=2.4 Score=35.08 Aligned_cols=66 Identities=23% Similarity=0.240 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e 535 (617)
-=+..|++|+.+++.|+.+-..-....-...+.....-++...+.++++....+++.|++++.+.|
T Consensus 9 EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~~E 74 (74)
T PF12329_consen 9 EKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKRAE 74 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 345678999999999976655444433333333333345666777777777777777877776553
No 126
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.04 E-value=3.4 Score=44.02 Aligned_cols=134 Identities=22% Similarity=0.247 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH-hHHhhhccccccc
Q 007111 471 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLEL-AQEEANSLSNIVH 549 (617)
Q Consensus 471 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~-~qe~~~~~~~~~~ 549 (617)
|+=+++.+--....|+..++.....++...+.+..+-+-..++..+.+.+.+|.+.||+..+..+. =|+|.+.+.+-+-
T Consensus 140 YeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~ 219 (325)
T PF08317_consen 140 YEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELA 219 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHH
Confidence 333444444444455555555555555555555555555555555555555555555554443321 1233332222111
Q ss_pred CCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhccccccchh------------------hHHHHHHHHhhhhccC
Q 007111 550 SDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQV------------------EVFHLKQRLQSLENRA 608 (617)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~ 608 (617)
.++.+++-+|+-+++.|+||..-+.-+..=.++--+++. ||..||.++..||+..
T Consensus 220 ----~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 220 ----EQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLT 292 (325)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 122445555555556666666555555443333333332 5666677766666543
No 127
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=87.95 E-value=3.7 Score=43.47 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=14.8
Q ss_pred hhHHHHHHHHhhhhccCC
Q 007111 592 VEVFHLKQRLQSLENRAP 609 (617)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~ 609 (617)
-||..||.+++.+|..++
T Consensus 271 ~Ei~~Lk~~~~~Le~l~g 288 (312)
T smart00787 271 KEIEKLKEQLKLLQSLTG 288 (312)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 588999999999887655
No 128
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=87.62 E-value=3.4 Score=51.72 Aligned_cols=53 Identities=26% Similarity=0.293 Sum_probs=37.9
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhhc
Q 007111 554 RLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLEN 606 (617)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (617)
.|+.+++-+...+...++++...++.+..=+.|.=+|+.++..+.++++.++.
T Consensus 776 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (1163)
T COG1196 776 KLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQ 828 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555556666788888888877777777888888888888776664
No 129
>PRK11281 hypothetical protein; Provisional
Probab=87.50 E-value=2.2 Score=52.47 Aligned_cols=119 Identities=17% Similarity=0.230 Sum_probs=77.9
Q ss_pred HhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHH
Q 007111 487 GQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVL 566 (617)
Q Consensus 487 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (617)
+.|.+++...+++++. .+..+++++++++.-++++....+++.+..+.+.. .-.+.....--.||..++-+.+-|
T Consensus 63 ~~l~~tL~~L~qi~~~----~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~-~~~~~~~~Sl~qLEq~L~q~~~~L 137 (1113)
T PRK11281 63 QDLEQTLALLDKIDRQ----KEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEE-TRETLSTLSLRQLESRLAQTLDQL 137 (1113)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHhhcccccc-ccccccccCHHHHHHHHHHHHHHH
Confidence 3445555555555555 34445677777777777777666666443211111 101111111133788888888888
Q ss_pred HHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhhccCCC
Q 007111 567 DDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLENRAPT 610 (617)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (617)
.+.|+.|-.--..|++-++|-=.-|-++....+|+|.++++-..
T Consensus 138 q~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 138 QNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88888888888888888888888888888889999888876543
No 130
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=87.46 E-value=3.1 Score=48.77 Aligned_cols=33 Identities=30% Similarity=0.317 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhh
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEK 501 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~ 501 (617)
+.-|+|+++..+....||.||.+-...|-++|.
T Consensus 491 ~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~ 523 (697)
T PF09726_consen 491 QQLEKRLAEERRQRASLEKQLQEERKARKEEEE 523 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 355666777777777777777766655544433
No 131
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=87.46 E-value=3 Score=52.12 Aligned_cols=9 Identities=22% Similarity=0.136 Sum_probs=3.3
Q ss_pred cchhhhccc
Q 007111 578 GVLAGERAR 586 (617)
Q Consensus 578 ~~~~~~~~~ 586 (617)
+-|..++.|
T Consensus 814 ~~~~~~~~~ 822 (1163)
T COG1196 814 RELESLEQR 822 (1163)
T ss_pred HHHHHHHHH
Confidence 333333333
No 132
>PRK11281 hypothetical protein; Provisional
Probab=87.15 E-value=4.5 Score=49.88 Aligned_cols=107 Identities=24% Similarity=0.266 Sum_probs=71.4
Q ss_pred HHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhh-------------hhHHHHHHHHHHHHHHHHHHHHHHhhh-----
Q 007111 473 SKMAALIRKNGILEGQLAAALVNREAAEKNFSSVL-------------KSRQEMEKKLADSLKEMELLKEKLAGL----- 534 (617)
Q Consensus 473 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~lkek~~~~----- 534 (617)
.++.....+.+.|++++++|-+..++|.+++...- .|-.++|.+|++...+.+...+-++.+
T Consensus 73 ~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi 152 (1113)
T PRK11281 73 DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLV 152 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777777777777777666666555321 123559999999998888888888887
Q ss_pred ------HHhHHh----------hhc-ccccccCC-------CcchhhhHHHHHHHHHHHHHhhhhhccc
Q 007111 535 ------ELAQEE----------ANS-LSNIVHSD-------NVRLEHDVAFLKAVLDDTQKELHSTRGV 579 (617)
Q Consensus 535 ------e~~qe~----------~~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (617)
|+||.. .++ |.|...++ ...|+.|.+.|++-.+-.|+||-+.--.
T Consensus 153 ~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l 221 (1113)
T PRK11281 153 SLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQL 221 (1113)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 555533 222 44433222 3345789999999999999999765433
No 133
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=87.12 E-value=52 Score=36.18 Aligned_cols=201 Identities=11% Similarity=0.029 Sum_probs=96.2
Q ss_pred eEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEE
Q 007111 50 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHM 128 (617)
Q Consensus 50 hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~ 128 (617)
.++...++..|++|-. ..++.=.-.-.+|+.++....+|... +....+ ++.++++|.. ..+++
T Consensus 140 ~~v~f~~~~g~~vG~~-------G~il~T~DgG~tW~~~~~~~~~p~~~--~~i~~~~~~~~~ivg~~-------G~v~~ 203 (398)
T PLN00033 140 NSISFKGKEGWIIGKP-------AILLHTSDGGETWERIPLSPKLPGEP--VLIKATGPKSAEMVTDE-------GAIYV 203 (398)
T ss_pred eeeEEECCEEEEEcCc-------eEEEEEcCCCCCceECccccCCCCCc--eEEEEECCCceEEEecc-------ceEEE
Confidence 4455567788888632 12343333457899887432333332 233334 3567777632 22555
Q ss_pred EECCCCcEEEeecC-CCCCCCC--------------cccEEEEECCcEEEEEccCCCCCCCCeEEEE-ECCCCcEEEeec
Q 007111 129 FDLKSLTWLPLHCT-GTGPSPR--------------SNHVAALYDDKNLLIFGGSSKSKTLNDLYSL-DFETMIWTRIKI 192 (617)
Q Consensus 129 yD~~t~~W~~l~~~-g~~P~~R--------------~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~y-D~~t~~W~~~~~ 192 (617)
-+-...+|+.+... .+.|..+ ...++....+..++++|-.. .+++- |.....|+.+..
T Consensus 204 S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G------~~~~s~d~G~~~W~~~~~ 277 (398)
T PLN00033 204 TSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRG------NFYLTWEPGQPYWQPHNR 277 (398)
T ss_pred ECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCc------cEEEecCCCCcceEEecC
Confidence 55455689976210 0001110 11122222333255665433 24443 333334898865
Q ss_pred CCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcE-----EEeecCCCCCCCCCcceEEEEEeecCCcE
Q 007111 193 RGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEW-----SVAITSPSSSVTSNKGFTLVLVQHKEKDF 266 (617)
Q Consensus 193 ~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W-----~~l~~~~~~~p~~r~~~s~v~v~~~~~~~ 266 (617)
|.++...++... ++.++++|... .++.-+.....| ..+.. +..+.....+.. .+++.
T Consensus 278 ----~~~~~l~~v~~~~dg~l~l~g~~G------~l~~S~d~G~~~~~~~f~~~~~-----~~~~~~l~~v~~--~~d~~ 340 (398)
T PLN00033 278 ----ASARRIQNMGWRADGGLWLLTRGG------GLYVSKGTGLTEEDFDFEEADI-----KSRGFGILDVGY--RSKKE 340 (398)
T ss_pred ----CCccceeeeeEcCCCCEEEEeCCc------eEEEecCCCCcccccceeeccc-----CCCCcceEEEEE--cCCCc
Confidence 334444444433 77888887532 244444444444 44321 112233333333 24577
Q ss_pred EEEEcCCCCCCCCeEEEEECCCCccccc
Q 007111 267 LVAFGGIKKEPSNQVEVLSIEKNESSMG 294 (617)
Q Consensus 267 L~I~GG~~~~~~~dV~vyd~~~~~W~~~ 294 (617)
++++|... -+.+-......|.+.
T Consensus 341 ~~a~G~~G-----~v~~s~D~G~tW~~~ 363 (398)
T PLN00033 341 AWAAGGSG-----ILLRSTDGGKSWKRD 363 (398)
T ss_pred EEEEECCC-----cEEEeCCCCcceeEc
Confidence 88888763 344444445566553
No 134
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=87.11 E-value=3.2 Score=41.11 Aligned_cols=110 Identities=25% Similarity=0.289 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHH----------HHHHHHHHHHHHHHHHHHHHhhhHHhH
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQ----------EMEKKLADSLKEMELLKEKLAGLELAQ 538 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~lkek~~~~e~~q 538 (617)
..-++.++.+..+|..|..=|..|....+...+.|...-++++ .++++|.+..-|.|.|+.++..++...
T Consensus 44 ~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Er 123 (201)
T PF13851_consen 44 ERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQER 123 (201)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677778888888888888888888888777665444443 345666667777888999999888877
Q ss_pred Hhhhccc-ccc-------cCCCcchhhhHHHHHHHHHHHHHhhhhhcc
Q 007111 539 EEANSLS-NIV-------HSDNVRLEHDVAFLKAVLDDTQKELHSTRG 578 (617)
Q Consensus 539 e~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (617)
+|.-.-. ..| ---|+-||..|+-|...|+..+.+|++.-.
T Consensus 124 deL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 124 DELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6654321 122 235788999999999999999999997643
No 135
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=86.64 E-value=6.5 Score=38.74 Aligned_cols=117 Identities=21% Similarity=0.253 Sum_probs=67.1
Q ss_pred chHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhh---------------hhhHHHHHHHHHHHHHHHHHHHH
Q 007111 465 SSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV---------------LKSRQEMEKKLADSLKEMELLKE 529 (617)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~lke 529 (617)
++|.+-+..++..|-.+.-....+.-++-...-..+..+-.. |..|+++..+|.....+++.-.+
T Consensus 60 pqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ 139 (194)
T PF15619_consen 60 PQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEK 139 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 567776666666655544444444433333332222222111 44566666677666666666666
Q ss_pred HHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhh
Q 007111 530 KLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLE 605 (617)
Q Consensus 530 k~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (617)
|+..+|.- +-..|-..-+++++-+.=..++|.|+-+ ||.||++|.++|..-|
T Consensus 140 ki~~Lek~----------leL~~k~~~rql~~e~kK~~~~~~~~~~--------------l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 140 KIQELEKQ----------LELENKSFRRQLASEKKKHKEAQEEVKS--------------LQEEIQRLNQKLKEKE 191 (194)
T ss_pred HHHHHHHH----------HHHHhhHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHh
Confidence 66666643 2222333446666666666667666653 6788889988887644
No 136
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=86.30 E-value=39 Score=34.92 Aligned_cols=160 Identities=19% Similarity=0.113 Sum_probs=94.5
Q ss_pred eEEEE-ECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEE
Q 007111 50 HSLIS-WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHM 128 (617)
Q Consensus 50 hs~v~-~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~ 128 (617)
.++.. .++.+|.--|..+ .+.+..||+.+++-.... ++|..-.+-.++.++++||..- - ....+++
T Consensus 48 QGL~~~~~g~LyESTG~yG----~S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLT---W---k~~~~f~ 114 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYG----QSSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLT---W---KEGTGFV 114 (264)
T ss_dssp EEEEEEETTEEEEEECSTT----EEEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEE---S---SSSEEEE
T ss_pred ccEEecCCCEEEEeCCCCC----cEEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEE---e---cCCeEEE
Confidence 34445 5778888877643 357999999999876555 5788888999999999999983 1 2467899
Q ss_pred EECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEe-ecC-CCCCCCCcceEEE
Q 007111 129 FDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRI-KIR-GFHPSPRAGCCGV 206 (617)
Q Consensus 129 yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~-~~~-g~~P~~R~~ha~v 206 (617)
||+.+.+ .+ +..+.+.-|-+.|..++. +|+.-|. +.++.+||.+.+=... ... ...|..+- --+=
T Consensus 115 yd~~tl~--~~---~~~~y~~EGWGLt~dg~~-Li~SDGS------~~L~~~dP~~f~~~~~i~V~~~g~pv~~L-NELE 181 (264)
T PF05096_consen 115 YDPNTLK--KI---GTFPYPGEGWGLTSDGKR-LIMSDGS------SRLYFLDPETFKEVRTIQVTDNGRPVSNL-NELE 181 (264)
T ss_dssp EETTTTE--EE---EEEE-SSS--EEEECSSC-EEEE-SS------SEEEEE-TTT-SEEEEEE-EETTEE---E-EEEE
T ss_pred Eccccce--EE---EEEecCCcceEEEcCCCE-EEEECCc------cceEEECCcccceEEEEEEEECCEECCCc-EeEE
Confidence 9998754 33 234444567788866665 8988885 4699999976543322 111 00111111 1122
Q ss_pred EECCEEEEEecCCCCCccceEEEEECCCCcEEEe
Q 007111 207 LCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 240 (617)
Q Consensus 207 ~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l 240 (617)
.+++.||.= .=..+.+.+.|+.++.-...
T Consensus 182 ~i~G~IyAN-----VW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 182 YINGKIYAN-----VWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp EETTEEEEE-----ETTSSEEEEEETTT-BEEEE
T ss_pred EEcCEEEEE-----eCCCCeEEEEeCCCCeEEEE
Confidence 235555542 11236789999999875554
No 137
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=86.28 E-value=11 Score=35.19 Aligned_cols=59 Identities=22% Similarity=0.277 Sum_probs=28.6
Q ss_pred HHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 007111 474 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLA 532 (617)
Q Consensus 474 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~ 532 (617)
+.-.+.-+...+++|+.++-....+.|..+.++.+=.+.+|..|..+...+..+|+++.
T Consensus 8 E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le 66 (143)
T PF12718_consen 8 EADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE 66 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666666655555555555444444444444444443333333333333
No 138
>PRK02889 tolB translocation protein TolB; Provisional
Probab=85.97 E-value=60 Score=35.76 Aligned_cols=140 Identities=9% Similarity=0.010 Sum_probs=70.8
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECC-EEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcc
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 151 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~-~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~ 151 (617)
.++|.+|..+.....+... ....... ...-++ .|++.....+ ...+|.++..+.....+...+ .+.
T Consensus 264 ~~Iy~~d~~~~~~~~lt~~---~~~~~~~-~wSpDG~~l~f~s~~~g----~~~Iy~~~~~~g~~~~lt~~g-----~~~ 330 (427)
T PRK02889 264 SQIYTVNADGSGLRRLTQS---SGIDTEP-FFSPDGRSIYFTSDRGG----APQIYRMPASGGAAQRVTFTG-----SYN 330 (427)
T ss_pred ceEEEEECCCCCcEECCCC---CCCCcCe-EEcCCCCEEEEEecCCC----CcEEEEEECCCCceEEEecCC-----CCc
Confidence 5799999988776666421 1111111 122234 5554432222 247899998888887774221 122
Q ss_pred c-EEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEE
Q 007111 152 H-VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIF 230 (617)
Q Consensus 152 h-~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~y 230 (617)
. ....-++++|+......+ . ..++++|+.++....+.... .. ...+ ..-+++.+++....+. ...++.+
T Consensus 331 ~~~~~SpDG~~Ia~~s~~~g-~--~~I~v~d~~~g~~~~lt~~~---~~-~~p~-~spdg~~l~~~~~~~g--~~~l~~~ 400 (427)
T PRK02889 331 TSPRISPDGKLLAYISRVGG-A--FKLYVQDLATGQVTALTDTT---RD-ESPS-FAPNGRYILYATQQGG--RSVLAAV 400 (427)
T ss_pred CceEECCCCCEEEEEEccCC-c--EEEEEEECCCCCeEEccCCC---Cc-cCce-ECCCCCEEEEEEecCC--CEEEEEE
Confidence 2 222335664554433322 1 36999999988877664321 11 1111 1125554444433222 2457777
Q ss_pred ECCCC
Q 007111 231 DILKG 235 (617)
Q Consensus 231 Dl~~~ 235 (617)
+....
T Consensus 401 ~~~g~ 405 (427)
T PRK02889 401 SSDGR 405 (427)
T ss_pred ECCCC
Confidence 77543
No 139
>PRK09039 hypothetical protein; Validated
Probab=85.97 E-value=4.2 Score=43.72 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=29.3
Q ss_pred chHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhh
Q 007111 465 SSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFS 504 (617)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~ 504 (617)
+++..+...+.+++=.+-+.|..|+++|.+.++.+|..+.
T Consensus 66 ~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 66 ADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666777777777777788888888888887777544
No 140
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=85.85 E-value=2.4 Score=35.57 Aligned_cols=69 Identities=25% Similarity=0.361 Sum_probs=52.5
Q ss_pred HHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHH
Q 007111 489 LAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLD 567 (617)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (617)
|++.-+.-+...+.+++.-..+.++|.|++.-+.||+.+|.||-.||.++...-. .-|.||+-||+-|+
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~----------~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQ----------QYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 4556666666666666666688999999999999999999999999999854322 23677777776554
No 141
>PHA02562 46 endonuclease subunit; Provisional
Probab=85.83 E-value=7.8 Score=44.20 Aligned_cols=104 Identities=12% Similarity=0.085 Sum_probs=57.0
Q ss_pred HHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhc-----cccccc
Q 007111 475 MAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS-----LSNIVH 549 (617)
Q Consensus 475 ~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~-----~~~~~~ 549 (617)
++.+-.+...|..+.......++..+.++..+-......+..|..+..+++.++.+++.++..-+-... +|.-.+
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~ 294 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQI 294 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcC
Confidence 333333344444444444444444444444444455555566666666666677666666544433322 566666
Q ss_pred CCCcchhhhHHHHHHHHHHHHHhhhhhccchh
Q 007111 550 SDNVRLEHDVAFLKAVLDDTQKELHSTRGVLA 581 (617)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (617)
.+. +..++-|+.-+++.+++++.-...+.
T Consensus 295 ~~~---~~~~~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 295 SEG---PDRITKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred CCc---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665 66666666666666666666555555
No 142
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=85.50 E-value=6.7 Score=44.37 Aligned_cols=135 Identities=24% Similarity=0.250 Sum_probs=69.8
Q ss_pred HHHHHHHHH---HHhchhhHhHHHHhhcHHHHhhhhh----hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHH----
Q 007111 471 YESKMAALI---RKNGILEGQLAAALVNREAAEKNFS----SVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQE---- 539 (617)
Q Consensus 471 ~~~~~~~~~---~~~~~~~~q~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe---- 539 (617)
.+..++.+- ++.+.+.+++-+..+.+|+-+..|. ..+--.++.+........|.+.|||.|.+++.--+
T Consensus 225 LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq 304 (546)
T PF07888_consen 225 LEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQ 304 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443 4445666677777777776663322 22111111111122334455667766666532211
Q ss_pred -------hhhccccc---ccCCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhccccccchh-----hHHHHHHHHhhh
Q 007111 540 -------EANSLSNI---VHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQV-----EVFHLKQRLQSL 604 (617)
Q Consensus 540 -------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 604 (617)
|.-.+.|+ -++|.-+.=-++|-|+.-|.|...+|--.|+-++-||. ++|..+ +|..|+.+|+.+
T Consensus 305 ~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk~-~l~~~~e~~k~~ie~L~~el~~~ 383 (546)
T PF07888_consen 305 EAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEKQ-ALQHSAEADKDEIEKLSRELQML 383 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHH
Confidence 11111111 11222111124677787788888888888888888888 655433 455677777776
Q ss_pred hc
Q 007111 605 EN 606 (617)
Q Consensus 605 ~~ 606 (617)
|.
T Consensus 384 e~ 385 (546)
T PF07888_consen 384 EE 385 (546)
T ss_pred HH
Confidence 64
No 143
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=85.44 E-value=8.3 Score=42.20 Aligned_cols=56 Identities=18% Similarity=0.200 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 007111 471 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMEL 526 (617)
Q Consensus 471 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (617)
.+++|+.--++...|+.||...-+...+.+..|.-.=.+.+++++++++..+..+.
T Consensus 50 ~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~ 105 (420)
T COG4942 50 LEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNA 105 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence 34455555555556666666665555555555555555555566666555444433
No 144
>PTZ00421 coronin; Provisional
Probab=85.41 E-value=71 Score=36.14 Aligned_cols=155 Identities=17% Similarity=0.128 Sum_probs=72.5
Q ss_pred CEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEE-EECCEEEEEeecCCCCCccCeEEEEECCCCc
Q 007111 57 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV-RASSVLILFGGEDGKRRKLNDLHMFDLKSLT 135 (617)
Q Consensus 57 ~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~-~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~ 135 (617)
+.+++.||.+ ..+.+||+.+..-...- . ..... -.++. ..++.+++.|+.++ .+.+||+.+.+
T Consensus 138 ~~iLaSgs~D------gtVrIWDl~tg~~~~~l-~-~h~~~--V~sla~spdG~lLatgs~Dg------~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGAD------MVVNVWDVERGKAVEVI-K-CHSDQ--ITSLEWNLDGSLLCTTSKDK------KLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCC------CEEEEEECCCCeEEEEE-c-CCCCc--eEEEEEECCCCEEEEecCCC------EEEEEECCCCc
Confidence 4577777763 25888888876432111 0 11111 11222 22567777776544 48899998765
Q ss_pred EE-EeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCE
Q 007111 136 WL-PLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTK 211 (617)
Q Consensus 136 W~-~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~~~ 211 (617)
-. .+. +. ...+.. .++.. ++. .++.+|.+.. .-..+..||+.+.... +... ... ......+..+ ++.
T Consensus 202 ~v~tl~--~H-~~~~~~-~~~w~~~~~-~ivt~G~s~s-~Dr~VklWDlr~~~~p-~~~~-~~d-~~~~~~~~~~d~d~~ 272 (493)
T PTZ00421 202 IVSSVE--AH-ASAKSQ-RCLWAKRKD-LIITLGCSKS-QQRQIMLWDTRKMASP-YSTV-DLD-QSSALFIPFFDEDTN 272 (493)
T ss_pred EEEEEe--cC-CCCcce-EEEEcCCCC-eEEEEecCCC-CCCeEEEEeCCCCCCc-eeEe-ccC-CCCceEEEEEcCCCC
Confidence 22 221 11 111111 22222 334 4455554321 1246889998653311 1110 001 1111222223 455
Q ss_pred EEEEecCCCCCccceEEEEECCCCcEEEe
Q 007111 212 WYIAGGGSRKKRHAETLIFDILKGEWSVA 240 (617)
Q Consensus 212 IyI~GG~s~~~~~~~v~~yDl~~~~W~~l 240 (617)
++++||..+ ..+.+||+.+......
T Consensus 273 ~L~lggkgD----g~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 273 LLYIGSKGE----GNIRCFELMNERLTFC 297 (493)
T ss_pred EEEEEEeCC----CeEEEEEeeCCceEEE
Confidence 666666322 2478888887765443
No 145
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=85.05 E-value=2.1 Score=42.16 Aligned_cols=51 Identities=27% Similarity=0.298 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHH
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLAD 519 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (617)
-....+++.+-+.++.+.+||-++....++.++.++.--+....++..++.
T Consensus 77 ~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~ 127 (194)
T PF08614_consen 77 AKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQ 127 (194)
T ss_dssp -------------------------------------HHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 344567888889999999999988888888887655444443444433333
No 146
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=84.92 E-value=40 Score=32.85 Aligned_cols=155 Identities=14% Similarity=0.093 Sum_probs=73.8
Q ss_pred EEECCEEEEEeecCCCCCccCeEEEEECCCCcE--EEeecC-CCCCCCCcccEEEEECC-cEEEEEccCCCCCCCCeEEE
Q 007111 104 VRASSVLILFGGEDGKRRKLNDLHMFDLKSLTW--LPLHCT-GTGPSPRSNHVAALYDD-KNLLIFGGSSKSKTLNDLYS 179 (617)
Q Consensus 104 ~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W--~~l~~~-g~~P~~R~~h~a~~~~~-~~LyV~GG~~~~~~~n~v~~ 179 (617)
+...+.+|+|-| +.+|+|+...... ..+... +.+|.. .. ++..... ..+|+|=|. ..|+
T Consensus 13 ~~~~g~~y~FkG--------~~~w~~~~~~~~~~p~~I~~~w~~~p~~-ID-Aa~~~~~~~~~yfFkg~-------~yw~ 75 (194)
T cd00094 13 TTLRGELYFFKG--------RYFWRLSPGKPPGSPFLISSFWPSLPSP-VD-AAFERPDTGKIYFFKGD-------KYWV 75 (194)
T ss_pred EEeCCEEEEEeC--------CEEEEEeCCCCCCCCeEhhhhCCCCCCC-cc-EEEEECCCCEEEEECCC-------EEEE
Confidence 344588999854 2467776542111 111100 112321 22 3333332 348998664 4888
Q ss_pred EECCCCcEEEeec---CCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEe-ec-CCCCCCCCCc
Q 007111 180 LDFETMIWTRIKI---RGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVA-IT-SPSSSVTSNK 252 (617)
Q Consensus 180 yD~~t~~W~~~~~---~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l-~~-~~~~~p~~r~ 252 (617)
|+..+..+.-... .+.++.+..--++... ++++|+|.| +..|+||....+...- +. .....+.-..
T Consensus 76 ~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~ 148 (194)
T cd00094 76 YTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFPGVPD 148 (194)
T ss_pred EcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCCcCC
Confidence 8876432221111 1111111111233333 689999988 4588998765543210 00 0000000001
Q ss_pred ceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 253 GFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 253 ~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
...++... . ++.+|+|-|. .+|+||..+.+
T Consensus 149 ~idaa~~~-~-~~~~yfF~g~------~y~~~d~~~~~ 178 (194)
T cd00094 149 KVDAAFRW-L-DGYYYFFKGD------QYWRFDPRSKE 178 (194)
T ss_pred CcceeEEe-C-CCcEEEEECC------EEEEEeCccce
Confidence 12222222 2 2678888875 78999987764
No 147
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=84.91 E-value=4.2 Score=41.29 Aligned_cols=106 Identities=32% Similarity=0.302 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhchhhHhHHHHhhcHHHHhhh-------hhhh---hhhHHHHHHHHHHH----HHHHHHHHHHHhhhHH
Q 007111 471 YESKMAALIRKNGILEGQLAAALVNREAAEKN-------FSSV---LKSRQEMEKKLADS----LKEMELLKEKLAGLEL 536 (617)
Q Consensus 471 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~-------~~~~---~~~~~~~~~~~~~~----~~~~~~lkek~~~~e~ 536 (617)
-+.+....-++...+++.|+.|-.-.+.+|.. |..+ +++-+..+.+.... ...+..|+++|..+|.
T Consensus 111 ~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~ 190 (237)
T PF00261_consen 111 AERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAEN 190 (237)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445556666666666665555555543 3333 33333333333332 2234447777777766
Q ss_pred hHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhhh
Q 007111 537 AQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHST 576 (617)
Q Consensus 537 ~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (617)
--|.+-.-++..-...=+||.++...|.-...+++||++|
T Consensus 191 Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~ 230 (237)
T PF00261_consen 191 RAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQT 230 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6565555444444455566666666666666666666654
No 148
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=84.86 E-value=3.9 Score=50.64 Aligned_cols=11 Identities=18% Similarity=0.087 Sum_probs=4.0
Q ss_pred chhhHhHHHHh
Q 007111 483 GILEGQLAAAL 493 (617)
Q Consensus 483 ~~~~~q~~~~~ 493 (617)
..++.++..+.
T Consensus 701 ~~~~~~l~~l~ 711 (1179)
T TIGR02168 701 AELRKELEELE 711 (1179)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 149
>PRK01742 tolB translocation protein TolB; Provisional
Probab=84.59 E-value=69 Score=35.27 Aligned_cols=141 Identities=14% Similarity=0.104 Sum_probs=72.0
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEee-cCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcc
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGG-EDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 151 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG-~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~ 151 (617)
..+|.+|+.+..-+.+. ..+.. .......-++..++++. .++. .++|.+|+.+....++.. + . ....
T Consensus 228 ~~i~i~dl~tg~~~~l~---~~~g~-~~~~~wSPDG~~La~~~~~~g~----~~Iy~~d~~~~~~~~lt~-~--~-~~~~ 295 (429)
T PRK01742 228 SQLVVHDLRSGARKVVA---SFRGH-NGAPAFSPDGSRLAFASSKDGV----LNIYVMGANGGTPSQLTS-G--A-GNNT 295 (429)
T ss_pred cEEEEEeCCCCceEEEe---cCCCc-cCceeECCCCCEEEEEEecCCc----EEEEEEECCCCCeEeecc-C--C-CCcC
Confidence 46999999887766554 22221 11112222444444433 3322 368999998888777631 1 1 1111
Q ss_pred cEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEE
Q 007111 152 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFD 231 (617)
Q Consensus 152 h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yD 231 (617)
.....-+++.|++....++. ..+|.++..+..-..+.. .. ...+....++.|++.++ +.++.+|
T Consensus 296 ~~~wSpDG~~i~f~s~~~g~---~~I~~~~~~~~~~~~l~~-----~~-~~~~~SpDG~~ia~~~~-------~~i~~~D 359 (429)
T PRK01742 296 EPSWSPDGQSILFTSDRSGS---PQVYRMSASGGGASLVGG-----RG-YSAQISADGKTLVMING-------DNVVKQD 359 (429)
T ss_pred CEEECCCCCEEEEEECCCCC---ceEEEEECCCCCeEEecC-----CC-CCccCCCCCCEEEEEcC-------CCEEEEE
Confidence 22223355545544333322 468888876654433311 11 11111112445555543 3478899
Q ss_pred CCCCcEEEee
Q 007111 232 ILKGEWSVAI 241 (617)
Q Consensus 232 l~~~~W~~l~ 241 (617)
+.+..+..+.
T Consensus 360 l~~g~~~~lt 369 (429)
T PRK01742 360 LTSGSTEVLS 369 (429)
T ss_pred CCCCCeEEec
Confidence 9988887654
No 150
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=84.44 E-value=6.1 Score=46.49 Aligned_cols=30 Identities=33% Similarity=0.162 Sum_probs=18.3
Q ss_pred HhhhhhccchhhhccccccchhhHHHHHHH
Q 007111 571 KELHSTRGVLAGERARAFQLQVEVFHLKQR 600 (617)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (617)
|-|.++|.-|+.=-.+.=+||.++.|+.|+
T Consensus 494 ~~le~l~~El~~l~~e~~~lq~~~~~~~qs 523 (980)
T KOG0980|consen 494 KALESLRQELALLLIELEELQRTLSNLAQS 523 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 334455555666666666777777766553
No 151
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.39 E-value=10 Score=44.09 Aligned_cols=121 Identities=31% Similarity=0.291 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHhchhhHhHHH-----HhhcHHHHhhhhhhhhhhHHHHHHHHHH-------HHHHHHH-----HHHHH
Q 007111 469 QFYESKMAALIRKNGILEGQLAA-----ALVNREAAEKNFSSVLKSRQEMEKKLAD-------SLKEMEL-----LKEKL 531 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-----lkek~ 531 (617)
.-|++=++.|=||--+|+.|--. +...+|++||+ -+-|||-|+|-.. ..||+|. -|..+
T Consensus 320 eNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekk----ererqEqErk~qlElekqLerQReiE~qrEEerkkei 395 (1118)
T KOG1029|consen 320 ENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKK----ERERQEQERKAQLELEKQLERQREIERQREEERKKEI 395 (1118)
T ss_pred HhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788887777777765433 34455555555 4667766665442 2223322 33345
Q ss_pred hhhHHhHHhhhcccccccCCCcchhhhHHHHH---HHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhhccC
Q 007111 532 AGLELAQEEANSLSNIVHSDNVRLEHDVAFLK---AVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLENRA 608 (617)
Q Consensus 532 ~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (617)
...|.|.+|...- -+||-|-|-.+ +-...-|+ -+.-+-+|-=|||+|+--|..++|.|++|-
T Consensus 396 e~rEaar~ElEkq--------RqlewErar~qem~~Qk~reqe-------~iv~~nak~~ql~~eletLn~k~qqls~kl 460 (1118)
T KOG1029|consen 396 ERREAAREELEKQ--------RQLEWERARRQEMLNQKNREQE-------WIVYLNAKKKQLQQELETLNFKLQQLSGKL 460 (1118)
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6666666664321 13343333222 22222232 233477888899999999999999998874
No 152
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=83.89 E-value=13 Score=33.65 Aligned_cols=85 Identities=16% Similarity=0.226 Sum_probs=56.0
Q ss_pred EECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEE-ECC
Q 007111 54 SWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMF-DLK 132 (617)
Q Consensus 54 ~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~y-D~~ 132 (617)
.++|-+|-.+-. .......+..||..+.+|+.++.+...........++.++|+|-++.-........-++|++ |..
T Consensus 3 cinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 3 CINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred EECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 356777765543 22345689999999999999874211234556667778889888876544332224578888 455
Q ss_pred CCcEEEee
Q 007111 133 SLTWLPLH 140 (617)
Q Consensus 133 t~~W~~l~ 140 (617)
...|.+..
T Consensus 81 k~~Wsk~~ 88 (129)
T PF08268_consen 81 KQEWSKKH 88 (129)
T ss_pred cceEEEEE
Confidence 67899774
No 153
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=83.29 E-value=4.7 Score=45.54 Aligned_cols=70 Identities=21% Similarity=0.254 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhc
Q 007111 512 EMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGER 584 (617)
Q Consensus 512 ~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (617)
.||..+.++.+|..-|.+-|+.+...-++.-.|-+=-+.-.-.|.+|++|++-+.+. |++.+|-..+.+.
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~---eI~e~~~~~~rd~ 235 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQ---EIEEERRKARRDT 235 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHH---HHHHHHHHHhhcc
Confidence 333444444444444444444443222222222222222233455666666655543 4444444444433
No 154
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.23 E-value=7 Score=42.12 Aligned_cols=72 Identities=25% Similarity=0.253 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHH--HhhhhhhhhhhHHHHHHHHHH----HHHHHHHHHHHHhhhHHh
Q 007111 466 SIYQFYESKMAALIRKNGILEGQLAAALVNREA--AEKNFSSVLKSRQEMEKKLAD----SLKEMELLKEKLAGLELA 537 (617)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~lkek~~~~e~~ 537 (617)
+|-+-|+-+.+++-+.-+.+|..+.++...+.. -+.+|.--.+-+++.++||-. ..||++.||.|++.+|.-
T Consensus 100 q~~~~leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~ 177 (542)
T KOG0993|consen 100 QMCQNLEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQR 177 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHH
Confidence 555678888888888888999999999888777 566777778889999999987 467888899999988743
No 155
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=82.88 E-value=8.5 Score=41.01 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhhhhhccchhh
Q 007111 559 VAFLKAVLDDTQKELHSTRGVLAG 582 (617)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~ 582 (617)
++-||+-|.+.+.++..-|.-|+-
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~e 234 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAE 234 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 156
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=82.79 E-value=65 Score=33.61 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=40.8
Q ss_pred CCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEee
Q 007111 174 LNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 241 (617)
Q Consensus 174 ~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~ 241 (617)
...+++||+.+..|.+....+. .+|....-+-..+.+++.-- ..+.+.+||+.+.+.+.++
T Consensus 253 ~g~l~rfdPs~~sW~eypLPgs--~arpys~rVD~~grVW~sea-----~agai~rfdpeta~ftv~p 313 (353)
T COG4257 253 TGSLHRFDPSVTSWIEYPLPGS--KARPYSMRVDRHGRVWLSEA-----DAGAIGRFDPETARFTVLP 313 (353)
T ss_pred CceeeEeCcccccceeeeCCCC--CCCcceeeeccCCcEEeecc-----ccCceeecCcccceEEEec
Confidence 3469999999999999876432 23433222323566776422 2245889999999999886
No 157
>PRK04863 mukB cell division protein MukB; Provisional
Probab=82.73 E-value=4.1 Score=51.81 Aligned_cols=141 Identities=23% Similarity=0.301 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHH-----HHHHHH----------HHHHHHH
Q 007111 467 IYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLA-----DSLKEM----------ELLKEKL 531 (617)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~----------~~lkek~ 531 (617)
..+.|+.+++.+-..-..++.+|..+-+.+++.++.++++..-..+.+..-| ++++.+ .-|+.++
T Consensus 443 ~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (1486)
T PRK04863 443 WLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRL 522 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHH
Confidence 3578999999999999999999999999999999988887665544443333 333333 3478888
Q ss_pred hhhHH---hHHhhhccccc---ccCCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhh
Q 007111 532 AGLEL---AQEEANSLSNI---VHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLE 605 (617)
Q Consensus 532 ~~~e~---~qe~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (617)
+.+|. -|-.++.|-.- .+.-++ .+..+|.+.+++.+.+|-+--..++.-+.|.-.+|=+...|+++++.++
T Consensus 523 ~~l~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~ 599 (1486)
T PRK04863 523 SELEQRLRQQQRAERLLAEFCKRLGKNL---DDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLA 599 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888 44443332211 122111 3455666777777777766667777778888888899999999999999
Q ss_pred ccCCC
Q 007111 606 NRAPT 610 (617)
Q Consensus 606 ~~~~~ 610 (617)
.++|.
T Consensus 600 ~~ap~ 604 (1486)
T PRK04863 600 ARAPA 604 (1486)
T ss_pred HhChH
Confidence 99884
No 158
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=82.59 E-value=5.7 Score=38.86 Aligned_cols=54 Identities=22% Similarity=0.203 Sum_probs=21.2
Q ss_pred HHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHhh
Q 007111 480 RKNGILEGQLAAALVNREAAEKNFSSVLKSRQE-MEKKLADSLKEMELLKEKLAG 533 (617)
Q Consensus 480 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lkek~~~ 533 (617)
.+.-.+-.++...-+..+++.|...+..+..++ .+.+.+...+|++.||++|+.
T Consensus 118 ~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 118 RRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEK 172 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 333333334443333344444433333333322 223333344455555554444
No 159
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=82.13 E-value=8.3 Score=47.56 Aligned_cols=109 Identities=11% Similarity=0.081 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhh---------hhhhHHHHHHHHHHHHHHHHHHHHHHhhh------
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSS---------VLKSRQEMEKKLADSLKEMELLKEKLAGL------ 534 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~lkek~~~~------ 534 (617)
.+-.+++..-.+...+++++++|-+.++++.+++.. .--|..++|.++..+.-+...+++.++..
T Consensus 55 ~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~ 134 (1109)
T PRK10929 55 NWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRARE 134 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 334566667777778888888887777777776552 12346888888888777777777776643
Q ss_pred ------------HHhHH---hhhc-ccccccC-C------CcchhhhHHHHHHHHHHHHHhhhhhcc
Q 007111 535 ------------ELAQE---EANS-LSNIVHS-D------NVRLEHDVAFLKAVLDDTQKELHSTRG 578 (617)
Q Consensus 535 ------------e~~qe---~~~~-~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (617)
-.|+. |.++ |.+-... + ...|+.|.+.+++-++..+.||-|.--
T Consensus 135 ~~~~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~ 201 (1109)
T PRK10929 135 ISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQLSANN 201 (1109)
T ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 22222 2222 3231111 1 334567899999999999999986433
No 160
>PLN02939 transferase, transferring glycosyl groups
Probab=82.08 E-value=6 Score=47.75 Aligned_cols=40 Identities=28% Similarity=0.487 Sum_probs=26.9
Q ss_pred ccccCCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhccccc
Q 007111 546 NIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAF 588 (617)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (617)
+++..+|.-|-.|+.|||+-|.+... - +-.+...|+-||+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~ 268 (977)
T PLN02939 229 DVLKEENMLLKDDIQFLKAELIEVAE-T--EERVFKLEKERSL 268 (977)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHh-h--hHHHHHHHHHHHH
Confidence 45667899999999999998876543 1 2234444555553
No 161
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=81.94 E-value=65 Score=33.04 Aligned_cols=159 Identities=11% Similarity=0.093 Sum_probs=81.0
Q ss_pred CCEEEEEeecCCCCCccCeEEEEEC-----CCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEE
Q 007111 107 SSVLILFGGEDGKRRKLNDLHMFDL-----KSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLD 181 (617)
Q Consensus 107 ~~~IYv~GG~~~~~~~~~~v~~yD~-----~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD 181 (617)
++++|++.|..++ .++.|.- ..+.+.... .+|.+-.|.+.+++++...|--.+ .+.|.+||
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~---~Lp~~~~GtG~vVYngslYY~~~~------s~~Ivkyd 95 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTY---KLPYPWQGTGHVVYNGSLYYNKYN------SRNIVKYD 95 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEE---EEeceeccCCeEEECCcEEEEecC------CceEEEEE
Confidence 3467777776543 3444422 122222221 466667777888888883333332 36799999
Q ss_pred CCCCcEE-Eeec--CCCC---CCCCcc---eEEEEECCEEEEEecCCCCCccceEEEEECCC----CcEEEeecCCCCCC
Q 007111 182 FETMIWT-RIKI--RGFH---PSPRAG---CCGVLCGTKWYIAGGGSRKKRHAETLIFDILK----GEWSVAITSPSSSV 248 (617)
Q Consensus 182 ~~t~~W~-~~~~--~g~~---P~~R~~---ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~----~~W~~l~~~~~~~p 248 (617)
+.+..-. .... .+.. |-...+ .-.++..+.++++=........--+-.+|+.+ .+|..- .+
T Consensus 96 L~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~------~~ 169 (250)
T PF02191_consen 96 LTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTS------YP 169 (250)
T ss_pred CcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEec------cC
Confidence 9988766 3222 1111 111111 22333444555553332221112234555554 346542 12
Q ss_pred CCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 249 TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 249 ~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
....+.+-++ ++.||++...+.....-.+.||..+++
T Consensus 170 k~~~~naFmv-----CGvLY~~~s~~~~~~~I~yafDt~t~~ 206 (250)
T PF02191_consen 170 KRSAGNAFMV-----CGVLYATDSYDTRDTEIFYAFDTYTGK 206 (250)
T ss_pred chhhcceeeE-----eeEEEEEEECCCCCcEEEEEEECCCCc
Confidence 2222332222 367888887765445567889998776
No 162
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=81.88 E-value=3 Score=44.25 Aligned_cols=89 Identities=21% Similarity=0.238 Sum_probs=52.2
Q ss_pred HHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHH
Q 007111 489 LAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDD 568 (617)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (617)
.++.....++.|+.....++--+++|+..+++.+|++.|+++.+.++..+++.-..-|..+.+-.+++.+..-|++-++-
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~ 124 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEY 124 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445556666777777777777777777777776555554444454454445555566666666666
Q ss_pred HHHhhhhhc
Q 007111 569 TQKELHSTR 577 (617)
Q Consensus 569 ~~~~~~~~~ 577 (617)
++.+|..-|
T Consensus 125 ~~~~L~~L~ 133 (314)
T PF04111_consen 125 ASNQLDRLR 133 (314)
T ss_dssp HHHHHHCHH
T ss_pred HHHHHHHHH
Confidence 666665544
No 163
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=81.84 E-value=5.3 Score=46.91 Aligned_cols=40 Identities=23% Similarity=0.432 Sum_probs=25.4
Q ss_pred chhhHhHHHHhhcHHHHhhhhhhhhhhH-------HHHHHHHHHHHH
Q 007111 483 GILEGQLAAALVNREAAEKNFSSVLKSR-------QEMEKKLADSLK 522 (617)
Q Consensus 483 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 522 (617)
..|..+|......-|+.+.++..+.++| +.||+||++-.+
T Consensus 456 r~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~ 502 (697)
T PF09726_consen 456 RSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERR 502 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666677777777777665555 356677776444
No 164
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=81.68 E-value=5.8 Score=35.02 Aligned_cols=78 Identities=35% Similarity=0.558 Sum_probs=56.8
Q ss_pred HHhhhhhhhhhhHHHHHHHHHH---HHHHHHHHHH-----HHhhhHHh---HHhhhcccccccCCCcchh---hhHHHHH
Q 007111 498 AAEKNFSSVLKSRQEMEKKLAD---SLKEMELLKE-----KLAGLELA---QEEANSLSNIVHSDNVRLE---HDVAFLK 563 (617)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~lke-----k~~~~e~~---qe~~~~~~~~~~~~~~~~~---~~~~~~~ 563 (617)
+.+|.++.-+.+||+||-.|.+ .+.|..+|.+ ||-|-=|. +|||+. |+ ..||| .|++-+.
T Consensus 16 ~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~--nV----~kRlefI~~Eikr~e 89 (120)
T KOG3478|consen 16 NLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEART--NV----GKRLEFISKEIKRLE 89 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHh--hH----HHHHHHHHHHHHHHH
Confidence 3466777779999999999986 6677777765 55553332 345442 22 35777 7888889
Q ss_pred HHHHHHHHhhhhhccchh
Q 007111 564 AVLDDTQKELHSTRGVLA 581 (617)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~ 581 (617)
+-+.|.|+|+---|+-++
T Consensus 90 ~~i~d~q~e~~k~R~~v~ 107 (120)
T KOG3478|consen 90 NQIRDSQEEFEKQREAVI 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998765
No 165
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=81.65 E-value=73 Score=33.41 Aligned_cols=138 Identities=17% Similarity=0.194 Sum_probs=78.0
Q ss_pred CEEEEEcccCC-CCC--Cc-eEEEEEECCCC-----cEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEE
Q 007111 57 KKVLLVGGKTD-SGS--DR-VSVWTFDTETE-----CWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLH 127 (617)
Q Consensus 57 ~~lyV~GG~~~-~~~--~~-~~v~~yd~~t~-----~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~ 127 (617)
..++++|.... +.. .. ..++.|+.... +++.+. ..+..-.-++++.++++|++.-| +.++
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~---~~~~~g~V~ai~~~~~~lv~~~g--------~~l~ 110 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH---STEVKGPVTAICSFNGRLVVAVG--------NKLY 110 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE---EEEESS-EEEEEEETTEEEEEET--------TEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE---EEeecCcceEhhhhCCEEEEeec--------CEEE
Confidence 46777774321 111 22 67999998884 566654 22333345677778888665543 5688
Q ss_pred EEECCCCc-EEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEE
Q 007111 128 MFDLKSLT-WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGV 206 (617)
Q Consensus 128 ~yD~~t~~-W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v 206 (617)
+|+..... |.+.. .+..+-+-.++.++++. | ++|-.-.+ -.++.|+....+-..+... +.++...++.
T Consensus 111 v~~l~~~~~l~~~~---~~~~~~~i~sl~~~~~~-I-~vgD~~~s---v~~~~~~~~~~~l~~va~d---~~~~~v~~~~ 179 (321)
T PF03178_consen 111 VYDLDNSKTLLKKA---FYDSPFYITSLSVFKNY-I-LVGDAMKS---VSLLRYDEENNKLILVARD---YQPRWVTAAE 179 (321)
T ss_dssp EEEEETTSSEEEEE---EE-BSSSEEEEEEETTE-E-EEEESSSS---EEEEEEETTTE-EEEEEEE---SS-BEEEEEE
T ss_pred EEEccCcccchhhh---eecceEEEEEEeccccE-E-EEEEcccC---EEEEEEEccCCEEEEEEec---CCCccEEEEE
Confidence 88888887 88773 33333344455555553 4 45543221 1355678766667766654 5577766666
Q ss_pred EE-CCEEEEEec
Q 007111 207 LC-GTKWYIAGG 217 (617)
Q Consensus 207 ~~-~~~IyI~GG 217 (617)
.+ ++. .++++
T Consensus 180 ~l~d~~-~~i~~ 190 (321)
T PF03178_consen 180 FLVDED-TIIVG 190 (321)
T ss_dssp EE-SSS-EEEEE
T ss_pred EecCCc-EEEEE
Confidence 66 555 44444
No 166
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=81.62 E-value=75 Score=33.57 Aligned_cols=201 Identities=15% Similarity=0.227 Sum_probs=87.2
Q ss_pred CCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcce
Q 007111 22 DRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSG 100 (617)
Q Consensus 22 ~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~ 100 (617)
...+|..+... .+.|.. .+.+..+ ++.++++|.. ..+|+=.-.-.+|+.+.. +..-.-
T Consensus 89 gG~tW~~v~l~---------~~lpgs-~~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~----~~~gs~ 147 (302)
T PF14870_consen 89 GGKTWERVPLS---------SKLPGS-PFGITALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVS----ETSGSI 147 (302)
T ss_dssp TTSS-EE-------------TT-SS--EEEEEEEETTEEEEEETT---------EEEESSTTSSEEEEE-----S----E
T ss_pred CCCCcEEeecC---------CCCCCC-eeEEEEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEccc----CCccee
Confidence 35568887631 123332 2444444 5677777643 247776666778998862 222222
Q ss_pred eEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEE
Q 007111 101 HTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYS 179 (617)
Q Consensus 101 ~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~ 179 (617)
..+... ++.+++++.+ ++ -+-..|+-...|.... .+..|.-..+....+..+++.. ..+. +..
T Consensus 148 ~~~~r~~dG~~vavs~~-G~-----~~~s~~~G~~~w~~~~----r~~~~riq~~gf~~~~~lw~~~-~Gg~-----~~~ 211 (302)
T PF14870_consen 148 NDITRSSDGRYVAVSSR-GN-----FYSSWDPGQTTWQPHN----RNSSRRIQSMGFSPDGNLWMLA-RGGQ-----IQF 211 (302)
T ss_dssp EEEEE-TTS-EEEEETT-SS-----EEEEE-TT-SS-EEEE------SSS-EEEEEE-TTS-EEEEE-TTTE-----EEE
T ss_pred EeEEECCCCcEEEEECc-cc-----EEEEecCCCccceEEc----cCccceehhceecCCCCEEEEe-CCcE-----EEE
Confidence 223333 4565555532 22 1235678778899884 5556666666666665476654 4332 333
Q ss_pred EE--CCCCcEEEeecCCCCCCCCcc-eEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceE
Q 007111 180 LD--FETMIWTRIKIRGFHPSPRAG-CCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFT 255 (617)
Q Consensus 180 yD--~~t~~W~~~~~~g~~P~~R~~-ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s 255 (617)
=+ -....|.+.... .....++ ..++.. ++.+|+.||.. .+++-.-.-.+|....... +.+-..+.
T Consensus 212 s~~~~~~~~w~~~~~~--~~~~~~~~ld~a~~~~~~~wa~gg~G------~l~~S~DgGktW~~~~~~~---~~~~n~~~ 280 (302)
T PF14870_consen 212 SDDPDDGETWSEPIIP--IKTNGYGILDLAYRPPNEIWAVGGSG------TLLVSTDGGKTWQKDRVGE---NVPSNLYR 280 (302)
T ss_dssp EE-TTEEEEE---B-T--TSS--S-EEEEEESSSS-EEEEESTT-------EEEESSTTSS-EE-GGGT---TSSS---E
T ss_pred ccCCCCccccccccCC--cccCceeeEEEEecCCCCEEEEeCCc------cEEEeCCCCccceECcccc---CCCCceEE
Confidence 34 245677764331 1122332 233444 67899998853 2444434556899975321 11222333
Q ss_pred EEEEeecCCcEEEEEcCC
Q 007111 256 LVLVQHKEKDFLVAFGGI 273 (617)
Q Consensus 256 ~v~v~~~~~~~L~I~GG~ 273 (617)
.+.+. .++-||+|..
T Consensus 281 i~f~~---~~~gf~lG~~ 295 (302)
T PF14870_consen 281 IVFVN---PDKGFVLGQD 295 (302)
T ss_dssp EEEEE---TTEEEEE-ST
T ss_pred EEEcC---CCceEEECCC
Confidence 33333 3567888864
No 167
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=81.22 E-value=6.5 Score=50.81 Aligned_cols=133 Identities=23% Similarity=0.247 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccc
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIV 548 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~ 548 (617)
|..+.|..+|.+.+..||+||++-...+|+=.+....+-+.+.+++..|.+....++.++.+...++... -+...-+
T Consensus 1002 ~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l---~kke~El 1078 (1930)
T KOG0161|consen 1002 QAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQL---KKKESEL 1078 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 3444555555555555555555554444444433333333333333333333333333333333222110 0111112
Q ss_pred cCCCcchh----------hhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhh
Q 007111 549 HSDNVRLE----------HDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSL 604 (617)
Q Consensus 549 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (617)
+.-+.++| ..|.-|-+-++|++.+|-..|--.+-....---|+.++..|+.+|.--
T Consensus 1079 ~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1079 SQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333 224455555666666777777666654333346778888888887654
No 168
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=81.20 E-value=2.6 Score=41.40 Aligned_cols=102 Identities=25% Similarity=0.319 Sum_probs=43.6
Q ss_pred HHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcch
Q 007111 476 AALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRL 555 (617)
Q Consensus 476 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~ 555 (617)
+.+-.+-..|...|+.+...+.+..-.|..+...-+++++++....+.+..|+..++.++.. ...|
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~--------------~~~l 135 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEK--------------IKDL 135 (194)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHH--------------HHHH
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHH--------------HHHH
Confidence 33444556677788888999999999988888888888888888888888888887777644 2347
Q ss_pred hhhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhh
Q 007111 556 EHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLE 605 (617)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (617)
+.+++-....++..+.|+-+ ||+++-++-+++..||
T Consensus 136 ~~~l~ek~k~~e~l~DE~~~--------------L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 136 EEELKEKNKANEILQDELQA--------------LQLQLNMLEEKLRKLE 171 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence 78899999999999999865 5566677777776665
No 169
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=81.20 E-value=4.2 Score=36.30 Aligned_cols=54 Identities=26% Similarity=0.381 Sum_probs=43.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHH
Q 007111 504 SSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQK 571 (617)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (617)
..++..-.+||..+....++++.||..++.+.. +|.+|.-|.+-|+..|++.+.
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~E--------------EN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLE--------------ENTALRLENDKLRERLEELEA 57 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhhc
Confidence 456777889999999999999999999988763 478888888888888887533
No 170
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=81.08 E-value=84 Score=33.74 Aligned_cols=140 Identities=16% Similarity=0.151 Sum_probs=73.2
Q ss_pred eEEEEECCCCc--EEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCC--cEEEeec
Q 007111 15 DVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETE--CWSVVEA 90 (617)
Q Consensus 15 ~v~~yd~~t~~--W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~ 90 (617)
.++.+|+.+.+ |...... .....+......+++||+ |.+.. .+++||..+. .|..-..
T Consensus 79 ~i~A~d~~~g~~~W~~~~~~-----------~~~~~~~~~~~~~G~i~~-g~~~g------~~y~ld~~~G~~~W~~~~~ 140 (370)
T COG1520 79 NIFALNPDTGLVKWSYPLLG-----------AVAQLSGPILGSDGKIYV-GSWDG------KLYALDASTGTLVWSRNVG 140 (370)
T ss_pred cEEEEeCCCCcEEecccCcC-----------cceeccCceEEeCCeEEE-ecccc------eEEEEECCCCcEEEEEecC
Confidence 68999998887 8655431 000111112222677664 43322 7999999654 5877653
Q ss_pred cCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEeecCCCCCCCCcccEEEEECCcEEEEEccC
Q 007111 91 KGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGS 168 (617)
Q Consensus 91 ~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~ 168 (617)
. . .+.....+..++.+|+.- ..+.++++|..+.+ |..-...+ .+...++... +.+. ++++|..
T Consensus 141 ~---~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~~--~~~~-~vy~~~~ 205 (370)
T COG1520 141 G---S-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAP-LSLSIYGSPA--IASG-TVYVGSD 205 (370)
T ss_pred C---C-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCc-cccccccCce--eecc-eEEEecC
Confidence 2 1 333333444455666542 13568899988664 88542111 2222222222 4444 3344433
Q ss_pred CCCCCCCeEEEEECCCC--cEEEe
Q 007111 169 SKSKTLNDLYSLDFETM--IWTRI 190 (617)
Q Consensus 169 ~~~~~~n~v~~yD~~t~--~W~~~ 190 (617)
+ .-..++.+|+.++ .|..-
T Consensus 206 ~---~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 206 G---YDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred C---CcceEEEEEccCCcEeeeee
Confidence 2 1226899999654 57753
No 171
>PRK10115 protease 2; Provisional
Probab=80.89 E-value=1.3e+02 Score=35.67 Aligned_cols=210 Identities=8% Similarity=-0.008 Sum_probs=100.0
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCC--cEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEEC-
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETE--CWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDL- 131 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~- 131 (617)
+++-+++............+|++++.+. .=..+-.. +........... +++..++...... .+.++.|+.
T Consensus 182 D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e---~~~~~~~~~~~s~d~~~l~i~~~~~~---~~~~~l~~~~ 255 (686)
T PRK10115 182 DSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEE---KDDTFYVSLHKTTSKHYVVIHLASAT---TSEVLLLDAE 255 (686)
T ss_pred CCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEee---CCCCEEEEEEEcCCCCEEEEEEECCc---cccEEEEECc
Confidence 4444444443222124468999999988 32333311 122222233333 4444445444332 467888884
Q ss_pred -CCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECC-CCcEEEeecCCCCCCCCcceEEEEEC
Q 007111 132 -KSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFE-TMIWTRIKIRGFHPSPRAGCCGVLCG 209 (617)
Q Consensus 132 -~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~-t~~W~~~~~~g~~P~~R~~ha~v~~~ 209 (617)
.+..|..+. +.+.. ..+.....++. +|+.--.+ .....+...++. +..|+.+... ...+.--.+...+
T Consensus 256 ~~~~~~~~~~---~~~~~-~~~~~~~~~~~-ly~~tn~~--~~~~~l~~~~~~~~~~~~~l~~~---~~~~~i~~~~~~~ 325 (686)
T PRK10115 256 LADAEPFVFL---PRRKD-HEYSLDHYQHR-FYLRSNRH--GKNFGLYRTRVRDEQQWEELIPP---RENIMLEGFTLFT 325 (686)
T ss_pred CCCCCceEEE---ECCCC-CEEEEEeCCCE-EEEEEcCC--CCCceEEEecCCCcccCeEEECC---CCCCEEEEEEEEC
Confidence 334444332 11211 11222233444 77775432 223347777876 6789887653 1122222344457
Q ss_pred CEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEee--cCCcEEEEEcCCCCCCCCeEEEEECC
Q 007111 210 TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQH--KEKDFLVAFGGIKKEPSNQVEVLSIE 287 (617)
Q Consensus 210 ~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~--~~~~~L~I~GG~~~~~~~dV~vyd~~ 287 (617)
+.+++..-..+ ...++++|+.+.....+.. +.+.. .+.+.... .++..++.+.+.. ....++.||+.
T Consensus 326 ~~l~~~~~~~g---~~~l~~~~~~~~~~~~l~~-----~~~~~-~~~~~~~~~~~~~~~~~~~ss~~--~P~~~y~~d~~ 394 (686)
T PRK10115 326 DWLVVEERQRG---LTSLRQINRKTREVIGIAF-----DDPAY-VTWIAYNPEPETSRLRYGYSSMT--TPDTLFELDMD 394 (686)
T ss_pred CEEEEEEEeCC---EEEEEEEcCCCCceEEecC-----CCCce-EeeecccCCCCCceEEEEEecCC--CCCEEEEEECC
Confidence 77777654322 2457888876555554421 01111 11111111 1122333333332 35688999988
Q ss_pred CCccc
Q 007111 288 KNESS 292 (617)
Q Consensus 288 ~~~W~ 292 (617)
+.+|.
T Consensus 395 ~~~~~ 399 (686)
T PRK10115 395 TGERR 399 (686)
T ss_pred CCcEE
Confidence 77653
No 172
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=80.67 E-value=2.7 Score=36.53 Aligned_cols=42 Identities=31% Similarity=0.436 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHH
Q 007111 511 QEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVL 566 (617)
Q Consensus 511 ~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (617)
-+|...|.-+..|.++|+.|++.+| .+|-+|+++++-+|.-.
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele--------------~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELE--------------DENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhc
Confidence 4677888889999999999999987 45778888988888754
No 173
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.31 E-value=11 Score=45.17 Aligned_cols=95 Identities=21% Similarity=0.207 Sum_probs=73.4
Q ss_pred chhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHH
Q 007111 483 GILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFL 562 (617)
Q Consensus 483 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~ 562 (617)
-+||.||+.+...-...+-.+...-.+.+..++|+..+.+.++.++++|++-|.+-++ +-.++--+-....-+
T Consensus 297 ~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~-------~~~~~~~~ke~~~~~ 369 (1174)
T KOG0933|consen 297 KALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAK-------VEEGYEKLKEAFQED 369 (1174)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhh-------hhhhHHHHHHHHHHH
Confidence 5789999999888888888888888999999999999999999999999888877655 333444444455566
Q ss_pred HHHHHHHHHhhhh-hccchhhhc
Q 007111 563 KAVLDDTQKELHS-TRGVLAGER 584 (617)
Q Consensus 563 ~~~~~~~~~~~~~-~~~~~~~~~ 584 (617)
-+.+++-|+++.| |+|.-++|-
T Consensus 370 s~~~e~~e~~~eslt~G~Ss~~~ 392 (1174)
T KOG0933|consen 370 SKLLEKAEELVESLTAGLSSNED 392 (1174)
T ss_pred HHHHHHHHHHHHHHhcccccCcc
Confidence 6778888887776 455555554
No 174
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=80.29 E-value=13 Score=32.93 Aligned_cols=60 Identities=20% Similarity=0.281 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 007111 468 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLEL 536 (617)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~ 536 (617)
...++..+-.|+..+..|+..+....+..+...+ -.-+++++++++.+.++. ||+|-+++
T Consensus 25 lE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~q-------r~~eLqaki~ea~~~le~--eK~ak~~l 84 (107)
T PF09304_consen 25 LEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQ-------RIAELQAKIDEARRNLED--EKQAKLEL 84 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 4567777777888887776666666555555544 456788999999998887 77777543
No 175
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=80.27 E-value=98 Score=34.04 Aligned_cols=87 Identities=18% Similarity=0.128 Sum_probs=45.3
Q ss_pred cEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcE-----EEeecCCCCCCCCcc-eEEEEE
Q 007111 135 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW-----TRIKIRGFHPSPRAG-CCGVLC 208 (617)
Q Consensus 135 ~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W-----~~~~~~g~~P~~R~~-ha~v~~ 208 (617)
.|+.+. .|.++.-.++....+..++++|.... ++.-+-....| ..+.. +..+.. .++...
T Consensus 271 ~W~~~~----~~~~~~l~~v~~~~dg~l~l~g~~G~------l~~S~d~G~~~~~~~f~~~~~----~~~~~~l~~v~~~ 336 (398)
T PLN00033 271 YWQPHN----RASARRIQNMGWRADGGLWLLTRGGG------LYVSKGTGLTEEDFDFEEADI----KSRGFGILDVGYR 336 (398)
T ss_pred ceEEec----CCCccceeeeeEcCCCCEEEEeCCce------EEEecCCCCcccccceeeccc----CCCCcceEEEEEc
Confidence 489884 44455444444444333888775432 43333333444 44322 222332 333333
Q ss_pred -CCEEEEEecCCCCCccceEEEEECCCCcEEEee
Q 007111 209 -GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 241 (617)
Q Consensus 209 -~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~ 241 (617)
++.+|++|... -+++-.....+|+...
T Consensus 337 ~d~~~~a~G~~G------~v~~s~D~G~tW~~~~ 364 (398)
T PLN00033 337 SKKEAWAAGGSG------ILLRSTDGGKSWKRDK 364 (398)
T ss_pred CCCcEEEEECCC------cEEEeCCCCcceeEcc
Confidence 66888888642 2444445567899975
No 176
>PRK01742 tolB translocation protein TolB; Provisional
Probab=80.26 E-value=98 Score=34.04 Aligned_cols=97 Identities=7% Similarity=0.058 Sum_probs=51.3
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECC-EEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcc
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 151 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~-~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~ 151 (617)
..+|.+|+.+.....+.. .... ........++ .|++.....+. ..+|.++..+..-..+. . .. +
T Consensus 272 ~~Iy~~d~~~~~~~~lt~---~~~~-~~~~~wSpDG~~i~f~s~~~g~----~~I~~~~~~~~~~~~l~---~--~~-~- 336 (429)
T PRK01742 272 LNIYVMGANGGTPSQLTS---GAGN-NTEPSWSPDGQSILFTSDRSGS----PQVYRMSASGGGASLVG---G--RG-Y- 336 (429)
T ss_pred EEEEEEECCCCCeEeecc---CCCC-cCCEEECCCCCEEEEEECCCCC----ceEEEEECCCCCeEEec---C--CC-C-
Confidence 369999998887766642 1111 1111112244 45544333322 46888887665443331 1 11 1
Q ss_pred cEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEee
Q 007111 152 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIK 191 (617)
Q Consensus 152 h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~ 191 (617)
.....-+++.|++.++ +.++.+|+.++.+..+.
T Consensus 337 ~~~~SpDG~~ia~~~~-------~~i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 337 SAQISADGKTLVMING-------DNVVKQDLTSGSTEVLS 369 (429)
T ss_pred CccCCCCCCEEEEEcC-------CCEEEEECCCCCeEEec
Confidence 1222235564555543 35888999999887654
No 177
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.25 E-value=11 Score=45.71 Aligned_cols=73 Identities=27% Similarity=0.376 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHh
Q 007111 468 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEE 540 (617)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~ 540 (617)
.|-.+.|+..+-.+-..|++.++-..+..+-+..++..+.+.-+++++...++.+|.+.|.|.+.+++.+-.|
T Consensus 902 ~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E 974 (1293)
T KOG0996|consen 902 VQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAE 974 (1293)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4667788888888888888888888888888888888888888888888888888888888888888877666
No 178
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=80.06 E-value=12 Score=35.03 Aligned_cols=88 Identities=23% Similarity=0.269 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhh----------hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHH
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV----------LKSRQEMEKKLADSLKEMELLKEKLAGLELAQE 539 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe 539 (617)
-.+.+|++|-.++..||.+|+.+...+..+..++... .+=.|.||..|..+.+-+....+||..++.+=|
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae 111 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAE 111 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4556667777777777766666655555444443332 333444444444444444444555554443322
Q ss_pred hhhcccccccCCCcchhhhHHHHHHHHHHHHH
Q 007111 540 EANSLSNIVHSDNVRLEHDVAFLKAVLDDTQK 571 (617)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (617)
+ +|+-|+.|..=.++..+
T Consensus 112 ~--------------~eRkv~~le~~~~~~E~ 129 (143)
T PF12718_consen 112 H--------------FERKVKALEQERDQWEE 129 (143)
T ss_pred H--------------HHHHHHHHHhhHHHHHH
Confidence 2 45666666665555444
No 179
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=80.05 E-value=15 Score=37.52 Aligned_cols=87 Identities=18% Similarity=0.238 Sum_probs=42.5
Q ss_pred hhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHH
Q 007111 485 LEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKA 564 (617)
Q Consensus 485 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (617)
|+.+|-..-..-..|...|.-.......|+.|+..+..+.+.|..|...+|.+.+....-...--.+.-+|+.+++-+.+
T Consensus 10 le~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~ 89 (246)
T PF00769_consen 10 LEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEA 89 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444555666666666666666676666666666666555555556667778877776666
Q ss_pred HHHHHHH
Q 007111 565 VLDDTQK 571 (617)
Q Consensus 565 ~~~~~~~ 571 (617)
....+..
T Consensus 90 ~i~~l~e 96 (246)
T PF00769_consen 90 EIARLEE 96 (246)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6554443
No 180
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=79.31 E-value=32 Score=36.87 Aligned_cols=71 Identities=17% Similarity=0.282 Sum_probs=40.1
Q ss_pred CCEEEEEe--cC--CCCCccceEEEEECCCCcE-EEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEE
Q 007111 209 GTKWYIAG--GG--SRKKRHAETLIFDILKGEW-SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEV 283 (617)
Q Consensus 209 ~~~IyI~G--G~--s~~~~~~~v~~yDl~~~~W-~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~v 283 (617)
.+.+|++= |. +....-.++|.||+++.+= .+++ . ... .-++.+..+++..||.+-+.+ ..+.+
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~---l----~~~-~~Si~Vsqd~~P~L~~~~~~~----~~l~v 316 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP---L----EHP-IDSIAVSQDDKPLLYALSAGD----GTLDV 316 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE---E----EEE-ESEEEEESSSS-EEEEEETTT----TEEEE
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe---C----CCc-cceEEEccCCCcEEEEEcCCC----CeEEE
Confidence 67888862 21 1223457899999998753 2222 0 111 114556667788888663321 37999
Q ss_pred EECCCCcc
Q 007111 284 LSIEKNES 291 (617)
Q Consensus 284 yd~~~~~W 291 (617)
||..+.+-
T Consensus 317 ~D~~tGk~ 324 (342)
T PF06433_consen 317 YDAATGKL 324 (342)
T ss_dssp EETTT--E
T ss_pred EeCcCCcE
Confidence 99998774
No 181
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=79.15 E-value=1.2e+02 Score=34.52 Aligned_cols=113 Identities=12% Similarity=0.058 Sum_probs=59.1
Q ss_pred ceEEEEECCCCc--EEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEee
Q 007111 14 DDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVE 89 (617)
Q Consensus 14 ~~v~~yd~~t~~--W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~ 89 (617)
..++++|..+.+ |+.-........+ .........+.+..+++||+.... ..++.+|..+.+ |+.-.
T Consensus 79 g~v~AlDa~TGk~lW~~~~~~~~~~~~---~~~~~~~~rg~av~~~~v~v~t~d-------g~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 79 SRVYALDAKTGKELWKYDPKLPDDVIP---VMCCDVVNRGVALYDGKVFFGTLD-------ARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CcEEEEECCCCceeeEecCCCCccccc---ccccccccccceEECCEEEEEcCC-------CEEEEEECCCCCEEeeccc
Confidence 368999987654 8765421000000 000001112345667888864321 269999998875 86543
Q ss_pred ccCCCCC-CcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEe
Q 007111 90 AKGDIPV-ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPL 139 (617)
Q Consensus 90 ~~g~~P~-~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l 139 (617)
. .... .....+-++.++.||+-.+.... .....++.||..+.+ |+.-
T Consensus 149 ~--~~~~~~~~tssP~v~~g~Vivg~~~~~~-~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 149 G--DYKAGYTITAAPLVVKGKVITGISGGEF-GVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred c--cccccccccCCcEEECCEEEEeeccccc-CCCcEEEEEECCCCceeEecc
Confidence 1 1111 11122334567777764322111 134579999999875 8744
No 182
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=79.06 E-value=13 Score=39.13 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhc
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVN 495 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~ 495 (617)
.|=.|+..|=..|..|+.|+......
T Consensus 15 ~YIekVr~LE~~N~~Le~~i~~~~~~ 40 (312)
T PF00038_consen 15 SYIEKVRFLEQENKRLESEIEELREK 40 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence 34455555556666666666655554
No 183
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=79.06 E-value=16 Score=43.34 Aligned_cols=57 Identities=25% Similarity=0.299 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMEL 526 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (617)
.+|++|..|..-.-+--..|..+..-++-|||+|+++-|...+.=+|++..+.|++.
T Consensus 959 ~re~eikeLkk~aKmkqeelSe~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~a 1015 (1243)
T KOG0971|consen 959 DRETEIKELKKSAKMKQEELSEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQA 1015 (1243)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHH
Confidence 556666666555555556677777888888888888888888887888887777765
No 184
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=78.63 E-value=26 Score=34.87 Aligned_cols=67 Identities=16% Similarity=0.262 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHh----chhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007111 468 YQFYESKMAALIRKN----GILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 534 (617)
Q Consensus 468 ~~~~~~~~~~~~~~~----~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~ 534 (617)
-......+..++-+. .+|++.+.++-....+|++.+..+.-.+..+++++....++++.+.++..-+
T Consensus 7 ~~~~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~A 77 (221)
T PF04012_consen 7 KTLVKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELA 77 (221)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555443 5777888888888888888888888888888888888888888877766444
No 185
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=78.61 E-value=11 Score=39.13 Aligned_cols=97 Identities=16% Similarity=0.222 Sum_probs=61.5
Q ss_pred cHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhh
Q 007111 495 NREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELH 574 (617)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (617)
..++.+.++..+-+..+++.+.+.+..++.+.+|++++.....=+....+..........+.+++.-.+..+..++++|.
T Consensus 64 ~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 143 (302)
T PF10186_consen 64 EIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLA 143 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555566666666666666666666666544332222222222333334456788888888899999999
Q ss_pred hhccchhhhccccccch
Q 007111 575 STRGVLAGERARAFQLQ 591 (617)
Q Consensus 575 ~~~~~~~~~~~~~~~~~ 591 (617)
..|..|.-|=+.-|-++
T Consensus 144 ~~r~~l~~~l~~ifpI~ 160 (302)
T PF10186_consen 144 RRRRQLIQELSEIFPIE 160 (302)
T ss_pred HHHHHHHHHHHHHhCce
Confidence 99999999888888884
No 186
>PTZ00420 coronin; Provisional
Probab=78.17 E-value=1.4e+02 Score=34.54 Aligned_cols=150 Identities=11% Similarity=0.054 Sum_probs=70.8
Q ss_pred EEEEEeecCCCCCccCeEEEEECCCCcE-EEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCc
Q 007111 109 VLILFGGEDGKRRKLNDLHMFDLKSLTW-LPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMI 186 (617)
Q Consensus 109 ~IYv~GG~~~~~~~~~~v~~yD~~t~~W-~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~ 186 (617)
.+++.||.++ .+.+||+.+.+= ..+. .+. .-.++... ++. +++.|+.++ .+.+||+.++.
T Consensus 139 ~iLaSgS~Dg------tIrIWDl~tg~~~~~i~----~~~--~V~SlswspdG~-lLat~s~D~-----~IrIwD~Rsg~ 200 (568)
T PTZ00420 139 YIMCSSGFDS------FVNIWDIENEKRAFQIN----MPK--KLSSLKWNIKGN-LLSGTCVGK-----HMHIIDPRKQE 200 (568)
T ss_pred eEEEEEeCCC------eEEEEECCCCcEEEEEe----cCC--cEEEEEECCCCC-EEEEEecCC-----EEEEEECCCCc
Confidence 4556666543 478899887651 1121 111 11223332 455 666666553 48999998764
Q ss_pred EEEeecCCCCCCCCcceEEE--E--ECCEEEEEecCCCCCccceEEEEECCC-CcEEEeecCCCCCCCCCcceEEEEEee
Q 007111 187 WTRIKIRGFHPSPRAGCCGV--L--CGTKWYIAGGGSRKKRHAETLIFDILK-GEWSVAITSPSSSVTSNKGFTLVLVQH 261 (617)
Q Consensus 187 W~~~~~~g~~P~~R~~ha~v--~--~~~~IyI~GG~s~~~~~~~v~~yDl~~-~~W~~l~~~~~~~p~~r~~~s~v~v~~ 261 (617)
-...-. + ....+...+.. . -++..++.+|.++. ....+.+||+.. .......... . ..-.+.....
T Consensus 201 ~i~tl~-g-H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~-~~R~VkLWDlr~~~~pl~~~~ld-----~-~~~~L~p~~D 271 (568)
T PTZ00420 201 IASSFH-I-HDGGKNTKNIWIDGLGGDDNYILSTGFSKN-NMREMKLWDLKNTTSALVTMSID-----N-ASAPLIPHYD 271 (568)
T ss_pred EEEEEe-c-ccCCceeEEEEeeeEcCCCCEEEEEEcCCC-CccEEEEEECCCCCCceEEEEec-----C-CccceEEeee
Confidence 332111 1 11111111111 1 24456666665542 234588888774 2211111000 0 0111223333
Q ss_pred cCCcEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 262 KEKDFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 262 ~~~~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
.+.+.+|+.|..++ .|.+|++...
T Consensus 272 ~~tg~l~lsGkGD~----tIr~~e~~~~ 295 (568)
T PTZ00420 272 ESTGLIYLIGKGDG----NCRYYQHSLG 295 (568)
T ss_pred CCCCCEEEEEECCC----eEEEEEccCC
Confidence 44567788875432 6788887554
No 187
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=78.08 E-value=2.3 Score=40.77 Aligned_cols=58 Identities=28% Similarity=0.455 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhH
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ 538 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~q 538 (617)
.+||.|+-+.|.||+.||..|+ .||. +...-|-|+..+.|.-.|. .++||+...+..+
T Consensus 3 eD~EsklN~AIERnalLE~ELd----EKE~-------L~~~~QRLkDE~RDLKqEl-~V~ek~~~~~~~~ 60 (166)
T PF04880_consen 3 EDFESKLNQAIERNALLESELD----EKEN-------LREEVQRLKDELRDLKQEL-IVQEKLRKANRKS 60 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHH-------HHHCH----------------------------
T ss_pred HHHHHHHHHHHHHhHHHHHHHH----HHHH-------HHHHHHHHHHHHHHHHHHH-HHHHHhhhhhccc
Confidence 5899999999999999999983 2332 2345677777788877787 7888887655443
No 188
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.07 E-value=14 Score=47.06 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhhhHHhHHhhhc
Q 007111 521 LKEMELLKEKLAGLELAQEEANS 543 (617)
Q Consensus 521 ~~~~~~lkek~~~~e~~qe~~~~ 543 (617)
.+|++.|+.+|..++..+..+..
T Consensus 798 ~~ei~~l~~qie~l~~~l~~~~~ 820 (1311)
T TIGR00606 798 QMELKDVERKIAQQAAKLQGSDL 820 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhccccc
Confidence 56777777777777766654443
No 189
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=77.97 E-value=13 Score=37.82 Aligned_cols=97 Identities=24% Similarity=0.302 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhccccc
Q 007111 509 SRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAF 588 (617)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (617)
...++++.+.+.-+++..|+++|+.+... +.......-...--.||-.+.-..+-|.+.|..|-.-..-|+.=++|.=
T Consensus 39 ~~~~~~~~i~~aP~~~~~l~~~l~~l~~~--~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~ 116 (240)
T PF12795_consen 39 RAAEYQKQIDQAPKEIRELQKELEALKSQ--DAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPE 116 (240)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhhcc--ccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence 33445555666666666666666655333 1111111111222245566666666666666666666666666666666
Q ss_pred cchhhHHHHHHHHhhhhcc
Q 007111 589 QLQVEVFHLKQRLQSLENR 607 (617)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~ 607 (617)
.+|..+...+++|+.++++
T Consensus 117 ~aq~~l~~~~~~l~ei~~~ 135 (240)
T PF12795_consen 117 RAQQQLSEARQRLQEIRNQ 135 (240)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6677777777777776655
No 190
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=77.96 E-value=95 Score=32.54 Aligned_cols=130 Identities=13% Similarity=0.153 Sum_probs=70.9
Q ss_pred CEEEEEeecCC-C--CCcc-CeEEEEECCCC-----cEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEE
Q 007111 108 SVLILFGGEDG-K--RRKL-NDLHMFDLKSL-----TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLY 178 (617)
Q Consensus 108 ~~IYv~GG~~~-~--~~~~-~~v~~yD~~t~-----~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~ 178 (617)
..++++|..-. . .... ..++.|+.... +++.+... ..+.+ -.+.+.+++. +++.-| +.++
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~--V~ai~~~~~~-lv~~~g-------~~l~ 110 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-EVKGP--VTAICSFNGR-LVVAVG-------NKLY 110 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-EESS---EEEEEEETTE-EEEEET-------TEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-eecCc--ceEhhhhCCE-EEEeec-------CEEE
Confidence 46667765422 1 1122 66999999885 55554211 22222 3466677777 655555 3488
Q ss_pred EEECCCCc-EEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEE
Q 007111 179 SLDFETMI-WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLV 257 (617)
Q Consensus 179 ~yD~~t~~-W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v 257 (617)
.|++.... |...... ..+-...++...++.|++ |-.... -.++.|+....+-..+.. ...++...++.
T Consensus 111 v~~l~~~~~l~~~~~~---~~~~~i~sl~~~~~~I~v-gD~~~s---v~~~~~~~~~~~l~~va~----d~~~~~v~~~~ 179 (321)
T PF03178_consen 111 VYDLDNSKTLLKKAFY---DSPFYITSLSVFKNYILV-GDAMKS---VSLLRYDEENNKLILVAR----DYQPRWVTAAE 179 (321)
T ss_dssp EEEEETTSSEEEEEEE----BSSSEEEEEEETTEEEE-EESSSS---EEEEEEETTTE-EEEEEE----ESS-BEEEEEE
T ss_pred EEEccCcccchhhhee---cceEEEEEEeccccEEEE-EEcccC---EEEEEEEccCCEEEEEEe----cCCCccEEEEE
Confidence 88888777 8887765 333355566667886654 432221 235677776555666552 12244444555
Q ss_pred EE
Q 007111 258 LV 259 (617)
Q Consensus 258 ~v 259 (617)
.+
T Consensus 180 ~l 181 (321)
T PF03178_consen 180 FL 181 (321)
T ss_dssp EE
T ss_pred Ee
Confidence 55
No 191
>PRK02224 chromosome segregation protein; Provisional
Probab=77.60 E-value=23 Score=42.82 Aligned_cols=55 Identities=18% Similarity=0.180 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhhccCCCCCCC
Q 007111 558 DVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLENRAPTPRKP 614 (617)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (617)
++.-+...++++|.++..-+.-++.-++..-.++-.+..++.+|. ++.-|+=.+|
T Consensus 406 ~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~--~~~Cp~C~r~ 460 (880)
T PRK02224 406 DLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLE--AGKCPECGQP 460 (880)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccCCCCCCc
Confidence 344455556666666666555555544444444444555544442 2444443333
No 192
>PRK03918 chromosome segregation protein; Provisional
Probab=76.82 E-value=29 Score=42.00 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhhccC
Q 007111 558 DVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLENRA 608 (617)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (617)
+++-|++-+++++++....+.-+..-+++.=++..++..|++.+..+++..
T Consensus 385 ~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~~~ 435 (880)
T PRK03918 385 TPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAK 435 (880)
T ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344566666666666655555566556666666677777888877776543
No 193
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=76.78 E-value=5.1 Score=43.02 Aligned_cols=93 Identities=17% Similarity=0.189 Sum_probs=69.2
Q ss_pred HHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCc
Q 007111 474 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNV 553 (617)
Q Consensus 474 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~ 553 (617)
+++-+..+.+.++.+|+.+...+++.++.|..+-..-+.+++++.+..+|...|++++...+.--+-|+.|-+-...+..
T Consensus 215 ~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~ 294 (344)
T PF12777_consen 215 EVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKE 294 (344)
T ss_dssp CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhh
Confidence 34445666677777777777777777777777777777777777788888888888887777777777777777777888
Q ss_pred chhhhHHHHHHHH
Q 007111 554 RLEHDVAFLKAVL 566 (617)
Q Consensus 554 ~~~~~~~~~~~~~ 566 (617)
|-++.++.|+.-+
T Consensus 295 RW~~~~~~l~~~~ 307 (344)
T PF12777_consen 295 RWSEQIEELEEQL 307 (344)
T ss_dssp CCHCHHHHHHHHH
T ss_pred hHHHHHHHHHHHh
Confidence 8877777666543
No 194
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=76.30 E-value=23 Score=35.99 Aligned_cols=100 Identities=23% Similarity=0.298 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhchhhHhHHHHhhcHHH--HhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccc
Q 007111 471 YESKMAALIRKNGILEGQLAAALVNREA--AEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIV 548 (617)
Q Consensus 471 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~ 548 (617)
.+.+++.+=.+...++.+|+++...+|. .+..+..+-+-.-.++..|++++.+.+.|+.++.++..+-
T Consensus 64 ~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~---------- 133 (239)
T COG1579 64 LESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERL---------- 133 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 4455555555555555555555544432 2233333333344445555555555555554444443331
Q ss_pred cCCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhc
Q 007111 549 HSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGER 584 (617)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (617)
+++|.+++-.++-++.-=++++-++--+..+|
T Consensus 134 ----~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~ 165 (239)
T COG1579 134 ----ERLEKNLAEAEARLEEEVAEIREEGQELSSKR 165 (239)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24555555555555554444444444444433
No 195
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=76.00 E-value=12 Score=36.56 Aligned_cols=62 Identities=27% Similarity=0.335 Sum_probs=40.2
Q ss_pred HHHHHHHhchhhHhHHHHhhcHHHHhh--------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 007111 475 MAALIRKNGILEGQLAAALVNREAAEK--------NFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLEL 536 (617)
Q Consensus 475 ~~~~~~~~~~~~~q~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~ 536 (617)
+..++++...++.+++++...-+.+.+ .....-+..++++++|+.+.+|++.||+...+++.
T Consensus 120 ~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 120 VHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566666666655555443332221 12223467788889999999999999999988863
No 196
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=75.91 E-value=8.2 Score=34.31 Aligned_cols=54 Identities=26% Similarity=0.440 Sum_probs=39.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHH
Q 007111 504 SSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQK 571 (617)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (617)
..++..-.+||.++.....+++.||..+..+.. +|.+|.-|.+-|+..|++..+
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~E--------------EN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLE--------------ENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhc
Confidence 345667788888888888999999988887752 366777666667766666544
No 197
>PRK09039 hypothetical protein; Validated
Probab=75.78 E-value=27 Score=37.62 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=32.6
Q ss_pred ccccccCCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhh
Q 007111 544 LSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQS 603 (617)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (617)
++.=-|++=.+|-.+|+-||+-+..+|-+|.+...-.+. .|..+..|+++|+.
T Consensus 131 ~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~-------~~~~i~~L~~~L~~ 183 (343)
T PRK09039 131 VSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRE-------SQAKIADLGRRLNV 183 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 333345555667778888888888888877765544432 34445555555554
No 198
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=75.56 E-value=2.2e+02 Score=35.54 Aligned_cols=158 Identities=15% Similarity=0.112 Sum_probs=85.4
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCC-------C---CCcceeEEEEE--CCEEEEEeecCCCCCcc
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDI-------P---VARSGHTVVRA--SSVLILFGGEDGKRRKL 123 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~-------P---~~R~~~s~~~~--~~~IYv~GG~~~~~~~~ 123 (617)
++.+||.... ...+++||+.+.....+...|.. + .......+++. ++.||+.... .
T Consensus 694 ~g~LyVad~~------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------n 761 (1057)
T PLN02919 694 NEKVYIAMAG------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE------S 761 (1057)
T ss_pred CCeEEEEECC------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC------C
Confidence 6788887532 23699999988766544322210 0 01122334333 3468887532 3
Q ss_pred CeEEEEECCCCcEEEeecCCC--CCC--------------CC--cccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCC
Q 007111 124 NDLHMFDLKSLTWLPLHCTGT--GPS--------------PR--SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM 185 (617)
Q Consensus 124 ~~v~~yD~~t~~W~~l~~~g~--~P~--------------~R--~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~ 185 (617)
+.+.+||+.++....+.. +. .+. .. .-.++++..+..+||....+ +.|.+||+.++
T Consensus 762 ~~Irv~D~~tg~~~~~~g-g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N-----~rIrviD~~tg 835 (1057)
T PLN02919 762 SSIRALDLKTGGSRLLAG-GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN-----HKIKKLDPATK 835 (1057)
T ss_pred CeEEEEECCCCcEEEEEe-cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC-----CEEEEEECCCC
Confidence 679999998766432210 00 000 00 01133333333388876543 45999999998
Q ss_pred cEEEeecCCCCC--------CCCcce-EEEEE-CCEEEEEecCCCCCccceEEEEECCCCc
Q 007111 186 IWTRIKIRGFHP--------SPRAGC-CGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 186 ~W~~~~~~g~~P--------~~R~~h-a~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
....+...|... ...... .++.. ++++||....+ +.+.++|+.+..
T Consensus 836 ~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N-----n~Irvid~~~~~ 891 (1057)
T PLN02919 836 RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN-----SLIRYLDLNKGE 891 (1057)
T ss_pred eEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC-----CEEEEEECCCCc
Confidence 888776543210 001112 23332 67899986544 458888887764
No 199
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=75.50 E-value=22 Score=39.03 Aligned_cols=125 Identities=22% Similarity=0.223 Sum_probs=76.1
Q ss_pred chHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcc
Q 007111 465 SSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSL 544 (617)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~ 544 (617)
.+..+-.++.++++-.+...++.||.+.-..+...+|+++...+..+.++.+. .+....|-+-|+.+-+- =.-..+
T Consensus 58 ~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~---r~qr~~La~~L~A~~r~-g~~p~~ 133 (420)
T COG4942 58 QDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE---REQRRRLAEQLAALQRS-GRNPPP 133 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhc-cCCCCc
Confidence 46667888999999999999999999999999999999888877777776665 12222344444443321 111223
Q ss_pred cccccCCC----cch------------h---------hhHHHHHHHHHHHHHhhhhhccchhhhccccccchhh
Q 007111 545 SNIVHSDN----VRL------------E---------HDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVE 593 (617)
Q Consensus 545 ~~~~~~~~----~~~------------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (617)
-..||.+. +|+ | .+++-+++-++.-|+||.++++....++.|-=+++-|
T Consensus 134 ~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E 207 (420)
T COG4942 134 ALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEE 207 (420)
T ss_pred hhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 121 1 1233344444455666666666666666665555543
No 200
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=75.43 E-value=5.3 Score=45.20 Aligned_cols=52 Identities=31% Similarity=0.324 Sum_probs=41.5
Q ss_pred HHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHh
Q 007111 489 LAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEE 540 (617)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~ 540 (617)
|+.-..-+-++|.-|+--+-||+.||-+.-|.+.|+-.||-|++++|+.|-|
T Consensus 148 ie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e 199 (861)
T KOG1899|consen 148 IEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNE 199 (861)
T ss_pred HHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhh
Confidence 3333344455666777778899999999999999999999999999988744
No 201
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=75.24 E-value=20 Score=40.92 Aligned_cols=108 Identities=28% Similarity=0.322 Sum_probs=81.2
Q ss_pred HHHHHHHHHH---HHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcc
Q 007111 468 YQFYESKMAA---LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSL 544 (617)
Q Consensus 468 ~~~~~~~~~~---~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~ 544 (617)
..-|..-++. ..++...+..++++++..|..|.+.-..+...-+...+++.+...|+..|||-+..+.+|..++..
T Consensus 122 ~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAee- 200 (522)
T PF05701_consen 122 REQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEE- 200 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4556655555 456777888999999999999999999999999999999999999999999999888777666553
Q ss_pred cccccCCCcchh--hhHHHHHHHHHHHHHhhhhhccch
Q 007111 545 SNIVHSDNVRLE--HDVAFLKAVLDDTQKELHSTRGVL 580 (617)
Q Consensus 545 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 580 (617)
|--++.++ .|...++.-|++.+++|-.-+.-+
T Consensus 201 ----e~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 201 ----ERIEIAAEREQDAEEWEKELEEAEEELEELKEEL 234 (522)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222 445566666777777777766666
No 202
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=75.20 E-value=18 Score=41.15 Aligned_cols=54 Identities=24% Similarity=0.426 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhh
Q 007111 510 RQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELH 574 (617)
Q Consensus 510 ~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (617)
.++|+.++....+++|+|+.||+.+... ++ +.++.++++--+.--.+.+.|||.
T Consensus 438 ~~~L~~~~ee~k~eie~L~~~l~~~~r~----------~~-~~~~~~rei~~~~~~I~~L~~~L~ 491 (652)
T COG2433 438 NSELKRELEELKREIEKLESELERFRRE----------VR-DKVRKDREIRARDRRIERLEKELE 491 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH-HHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666665433 33 455666666666666666666654
No 203
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=75.00 E-value=25 Score=35.79 Aligned_cols=120 Identities=20% Similarity=0.218 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhH------Hhhh
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ------EEAN 542 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~q------e~~~ 542 (617)
|-++.++..+-.+-.--..-|++|.+.++.+-|++.-+-.-...++.++.....|...+++|++.+|.++ .|.+
T Consensus 13 q~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~ 92 (239)
T COG1579 13 QKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELR 92 (239)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 4666666666666666666788888888888888888777777888888887778888888887777665 1112
Q ss_pred ccc---ccccCCCcchhhhHH-------HHHHHHHHHHHhhhhhccchhhhccccc
Q 007111 543 SLS---NIVHSDNVRLEHDVA-------FLKAVLDDTQKELHSTRGVLAGERARAF 588 (617)
Q Consensus 543 ~~~---~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (617)
.|. -+....-..||++++ -|..-.++.+.++-+++--++..|++.+
T Consensus 93 aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e 148 (239)
T COG1579 93 ALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLE 148 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 011111223444444 3444445555556666666666666654
No 204
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=74.72 E-value=17 Score=36.07 Aligned_cols=70 Identities=24% Similarity=0.267 Sum_probs=50.0
Q ss_pred HHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHH-------------------------HHHHHHHH
Q 007111 473 SKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLAD-------------------------SLKEMELL 527 (617)
Q Consensus 473 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~l 527 (617)
+.|..|......+|.+|.++....-+|.+....+...|-...+.+.+ ..++.+.+
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleRFT~Lyr~dH~~e~~e~~a 111 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSPADLERFTELYRNDHENEQAEEEA 111 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhhhhhHHHHHHH
Confidence 45777888888888888888888888888777777666655544443 23455668
Q ss_pred HHHHhhhHHhHHhhh
Q 007111 528 KEKLAGLELAQEEAN 542 (617)
Q Consensus 528 kek~~~~e~~qe~~~ 542 (617)
|+++..+|.+.|+..
T Consensus 112 k~~l~~aE~~~e~~~ 126 (207)
T PF05546_consen 112 KEALEEAEEKVEEAF 126 (207)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888887776654
No 205
>PHA02562 46 endonuclease subunit; Provisional
Probab=74.62 E-value=20 Score=40.78 Aligned_cols=101 Identities=14% Similarity=0.140 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhchhhHhHHHHhhcHHHHhhh---hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccc
Q 007111 472 ESKMAALIRKNGILEGQLAAALVNREAAEKN---FSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIV 548 (617)
Q Consensus 472 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~ 548 (617)
..++..+......|+.|+......+.+.+.. +..+.+...+++.++......++.++++.. ..|.+...|.+.+
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~---~l~~ei~~l~~~~ 374 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAK---KVKAAIEELQAEF 374 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhh
Confidence 5555555555566666666555555533332 222233333333333333333333333322 3333333343332
Q ss_pred cCCCc---chhhhHHHHHHHHHHHHHhhhh
Q 007111 549 HSDNV---RLEHDVAFLKAVLDDTQKELHS 575 (617)
Q Consensus 549 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 575 (617)
-..+- +|+.++..++.-.++..||.++
T Consensus 375 ~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 375 VDNAEELAKLQDELDKIVKTKSELVKEKYH 404 (562)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 2345667777777777777765
No 206
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=74.57 E-value=21 Score=35.14 Aligned_cols=61 Identities=20% Similarity=0.305 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhhh
Q 007111 509 SRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHST 576 (617)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (617)
..+++|.++++..+.+..|+++.+.+....|+.. ++..||+-++.-++.-+++..-+.++|
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~-------~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKD-------KEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555554443333332 445555555555555555555444443
No 207
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=74.54 E-value=25 Score=35.87 Aligned_cols=82 Identities=22% Similarity=0.331 Sum_probs=44.7
Q ss_pred hHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhh--------hcccccccCCCcchhh--
Q 007111 488 QLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEA--------NSLSNIVHSDNVRLEH-- 557 (617)
Q Consensus 488 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~--------~~~~~~~~~~~~~~~~-- 557 (617)
|-...++..+++++.+...-.-.+++++.+++..++++.|+++++.++..+.+. ..|...|..|=+=+..
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR 129 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEER 129 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHH
Confidence 333333444444444444444566666666666666666776666666555443 3355556655543333
Q ss_pred --hHHHHHHHHHHH
Q 007111 558 --DVAFLKAVLDDT 569 (617)
Q Consensus 558 --~~~~~~~~~~~~ 569 (617)
=|++|++.|++.
T Consensus 130 ~~Rl~~L~~~l~~~ 143 (251)
T PF11932_consen 130 QERLARLRAMLDDA 143 (251)
T ss_pred HHHHHHHHHhhhcc
Confidence 266666666554
No 208
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=74.12 E-value=10 Score=45.89 Aligned_cols=109 Identities=21% Similarity=0.210 Sum_probs=72.7
Q ss_pred chHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcc
Q 007111 465 SSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSL 544 (617)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~ 544 (617)
.+-+++-+.++..+-.+.-.|+.|+..+-..++..++.++.+=..+.+.++++.....||..|+-- | |.-|.+.-.+
T Consensus 660 d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~-~--e~~~~~~~~~ 736 (1074)
T KOG0250|consen 660 DDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNT-A--EEKQVDISKL 736 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-h--hhhhcchhhh
Confidence 444555566666666666667777777777777777777777777777888887777788777764 1 2223222111
Q ss_pred cccccCCCcchhhhHHHHHHHHHHHHHhhhhhc
Q 007111 545 SNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTR 577 (617)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (617)
|-.+.+..-.+++++-.-|-++++|.|+|.++
T Consensus 737 -~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~ 768 (1074)
T KOG0250|consen 737 -EDLAREIKKKEKEIEEKEAPLEKLKEELEHIE 768 (1074)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12334555677899999999999999998753
No 209
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=74.09 E-value=1.2e+02 Score=31.92 Aligned_cols=99 Identities=18% Similarity=0.183 Sum_probs=56.2
Q ss_pred ceEEEEEECCCCc----EEEeeccCCCCCCcceeEE---EEE---CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeec
Q 007111 72 RVSVWTFDTETEC----WSVVEAKGDIPVARSGHTV---VRA---SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHC 141 (617)
Q Consensus 72 ~~~v~~yd~~t~~----W~~~~~~g~~P~~R~~~s~---~~~---~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~ 141 (617)
++.|..||..+++ |+..- ..++..+.= ..+ ++.||+.=+ ++. .---+|..|..+..-+++.
T Consensus 77 YSHVH~yd~e~~~VrLLWkesi-----h~~~~WaGEVSdIlYdP~~D~LLlAR~-DGh--~nLGvy~ldr~~g~~~~L~- 147 (339)
T PF09910_consen 77 YSHVHEYDTENDSVRLLWKESI-----HDKTKWAGEVSDILYDPYEDRLLLARA-DGH--ANLGVYSLDRRTGKAEKLS- 147 (339)
T ss_pred cceEEEEEcCCCeEEEEEeccc-----CCccccccchhheeeCCCcCEEEEEec-CCc--ceeeeEEEcccCCceeecc-
Confidence 4579999999887 54432 222222211 112 467777532 222 2345899999999888874
Q ss_pred CCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcE
Q 007111 142 TGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW 187 (617)
Q Consensus 142 ~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W 187 (617)
+-|... .+.+.+.. ++-+ .....-.+.|.+||+.+++|
T Consensus 148 --~~ps~K---G~~~~D~a-~F~i--~~~~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 148 --SNPSLK---GTLVHDYA-CFGI--NNFHKGVSGIHCLDLISGKW 185 (339)
T ss_pred --CCCCcC---ceEeeeeE-EEec--cccccCCceEEEEEccCCeE
Confidence 333331 23333322 2211 22223356799999999999
No 210
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=73.39 E-value=16 Score=39.76 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=4.8
Q ss_pred hhHHHHHHHHhh
Q 007111 592 VEVFHLKQRLQS 603 (617)
Q Consensus 592 ~~~~~~~~~~~~ 603 (617)
.++..++.+|..
T Consensus 253 ~~l~~~~~~l~~ 264 (423)
T TIGR01843 253 ARLAELRERLNK 264 (423)
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 211
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=73.28 E-value=17 Score=40.27 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHh-HHhhhcccccccC
Q 007111 510 RQEMEKKLADSLKEMELLKEKLAGLELA-QEEANSLSNIVHS 550 (617)
Q Consensus 510 ~~~~~~~~~~~~~~~~~lkek~~~~e~~-qe~~~~~~~~~~~ 550 (617)
.+++..+...+.+++..|++++..+|.. ++....|-|++|.
T Consensus 68 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~ 109 (425)
T PRK05431 68 AEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHD 109 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 3455556666666677777777666543 3667889999998
No 212
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=73.27 E-value=19 Score=28.71 Aligned_cols=51 Identities=27% Similarity=0.307 Sum_probs=24.6
Q ss_pred HHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 007111 477 ALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELL 527 (617)
Q Consensus 477 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 527 (617)
+-||-+-.+..+|..+.+.--++|++|..+=+-.++|+.++....++||.|
T Consensus 8 ~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 8 AEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555556666655555555555554444333344444444444444433
No 213
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=72.99 E-value=17 Score=40.12 Aligned_cols=43 Identities=28% Similarity=0.358 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhH-HhhhcccccccCCC
Q 007111 510 RQEMEKKLADSLKEMELLKEKLAGLELAQ-EEANSLSNIVHSDN 552 (617)
Q Consensus 510 ~~~~~~~~~~~~~~~~~lkek~~~~e~~q-e~~~~~~~~~~~~~ 552 (617)
.+++..++..+-+++..|++++..+|... +....|-|++|.+=
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~v 114 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESV 114 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 34444444455555555555555555443 44677999999653
No 214
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=72.67 E-value=1.9 Score=45.54 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHhhhhccCCCCC
Q 007111 591 QVEVFHLKQRLQSLENRAPTPR 612 (617)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~ 612 (617)
...|-.|.+|+.+||.++++|.
T Consensus 139 aL~ItdLe~RV~~LEs~~s~~l 160 (326)
T PF04582_consen 139 ALNITDLESRVKALESGSSSPL 160 (326)
T ss_dssp HHHHHHHHHHHHHHHTTTTTT-
T ss_pred cchHhhHHHHHHHHhcCCCCCc
Confidence 3788999999999999999873
No 215
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=72.30 E-value=23 Score=40.28 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=12.4
Q ss_pred ccccchhhHHHHHHHHhhhh
Q 007111 586 RAFQLQVEVFHLKQRLQSLE 605 (617)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~ 605 (617)
-..+|+.++..++..|..+.
T Consensus 338 ~v~~L~~eL~~~r~eLea~~ 357 (522)
T PF05701_consen 338 EVSSLEAELNKTRSELEAAK 357 (522)
T ss_pred HHhhHHHHHHHHHHHHHHHH
Confidence 34666666666666666554
No 216
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.11 E-value=6.3 Score=40.68 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcc
Q 007111 511 QEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVR 554 (617)
Q Consensus 511 ~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~ 554 (617)
+++.+|-++.+|..|+||.|-+.+++-|++.-++++.+...|--
T Consensus 60 ~~~~~kq~eL~~rqeEL~Rke~ELdRREr~~a~~g~~~~~nNWP 103 (313)
T KOG3088|consen 60 KDLAKKQAELLKKQEELRRKEQELDRRERALARAGIVIRENNWP 103 (313)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccCcccccCCC
Confidence 34455566777788889999999999999999998888877754
No 217
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=72.01 E-value=60 Score=32.00 Aligned_cols=138 Identities=25% Similarity=0.340 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHhchhhHhH---HHHhhcHHHHhhhhhhhhhhHHHH-------HHHHHHHHHHHHH-HHHHHhhhHHh
Q 007111 469 QFYESKMAALIRKNGILEGQL---AAALVNREAAEKNFSSVLKSRQEM-------EKKLADSLKEMEL-LKEKLAGLELA 537 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~---~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-lkek~~~~e~~ 537 (617)
..-..+++.+..+|-+|...- +.|+...|-.+.+|+-++....+= -++..+..++.+. ||++=+.+...
T Consensus 22 ~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~ 101 (194)
T PF15619_consen 22 AELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKT 101 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888887643 457888888888888776443321 1222333333333 67777777777
Q ss_pred HHhhhcccccccCCCcc----hhhhHHHHHHHHHHHHHhh-----------hhhccchhhhccccccchhhHHHHHHHHh
Q 007111 538 QEEANSLSNIVHSDNVR----LEHDVAFLKAVLDDTQKEL-----------HSTRGVLAGERARAFQLQVEVFHLKQRLQ 602 (617)
Q Consensus 538 qe~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (617)
+.+...|..++-.-|+- |...|.-+++.+++..+.+ -+-+.-|+.|+.+...+|.+|..|...++
T Consensus 102 ~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~ 181 (194)
T PF15619_consen 102 KDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQ 181 (194)
T ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788887777774 4466888888888776544 35677899999999999999999999988
Q ss_pred hhhc
Q 007111 603 SLEN 606 (617)
Q Consensus 603 ~~~~ 606 (617)
.|.+
T Consensus 182 ~L~~ 185 (194)
T PF15619_consen 182 RLNQ 185 (194)
T ss_pred HHHH
Confidence 8764
No 218
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=71.94 E-value=1.7e+02 Score=32.60 Aligned_cols=150 Identities=15% Similarity=0.178 Sum_probs=73.2
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEE--ECCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~--~~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
.+++++.|+.+. .|.++|+.+.+-... ++.....-+++. .++.+++.|..++ .+.+||..+
T Consensus 257 ~g~~i~Sgs~D~------tvriWd~~~~~~~~~-----l~~hs~~is~~~f~~d~~~l~s~s~d~------~i~vwd~~~ 319 (456)
T KOG0266|consen 257 DGNLLVSGSDDG------TVRIWDVRTGECVRK-----LKGHSDGISGLAFSPDGNLLVSASYDG------TIRVWDLET 319 (456)
T ss_pred CCCEEEEecCCC------cEEEEeccCCeEEEe-----eeccCCceEEEEECCCCCEEEEcCCCc------cEEEEECCC
Confidence 458888888742 588888888443222 122222222233 3567777765433 488999888
Q ss_pred CcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE
Q 007111 134 LTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK 211 (617)
Q Consensus 134 ~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~ 211 (617)
..-..+...-....+. -...+.+ .+. .|++-+..+ +.+-.||+....--.... +..-..++.+..+.. ++.
T Consensus 320 ~~~~~~~~~~~~~~~~-~~~~~~fsp~~-~~ll~~~~d----~~~~~w~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 392 (456)
T KOG0266|consen 320 GSKLCLKLLSGAENSA-PVTSVQFSPNG-KYLLSASLD----RTLKLWDLRSGKSVGTYT-GHSNLVRCIFSPTLSTGGK 392 (456)
T ss_pred CceeeeecccCCCCCC-ceeEEEECCCC-cEEEEecCC----CeEEEEEccCCcceeeec-ccCCcceeEecccccCCCC
Confidence 7743111001111221 1223333 344 455555543 236667776543332221 101112444444444 455
Q ss_pred EEEEecCCCCCccceEEEEECCC
Q 007111 212 WYIAGGGSRKKRHAETLIFDILK 234 (617)
Q Consensus 212 IyI~GG~s~~~~~~~v~~yDl~~ 234 (617)
+.+.|+.. ..++.+|+.+
T Consensus 393 ~i~sg~~d-----~~v~~~~~~s 410 (456)
T KOG0266|consen 393 LIYSGSED-----GSVYVWDSSS 410 (456)
T ss_pred eEEEEeCC-----ceEEEEeCCc
Confidence 55555543 3478888875
No 219
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=71.58 E-value=20 Score=43.76 Aligned_cols=50 Identities=20% Similarity=0.147 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHH
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLAD 519 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (617)
-.+.++..+.++-..|+.|++.+-..++++|+-.+..=...|++..++.+
T Consensus 402 k~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~ 451 (1293)
T KOG0996|consen 402 KREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQ 451 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHH
Confidence 34556677888888899999999999999988776665555555544443
No 220
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=71.55 E-value=1.3e+02 Score=31.29 Aligned_cols=186 Identities=11% Similarity=0.070 Sum_probs=80.2
Q ss_pred eEEEEEECCCCc--EEEeeccCCCCCCcceeEEEEE-C-CEEEEEeecCCCCCccCeEEEEECCCCc-EEEee-cCCCCC
Q 007111 73 VSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRA-S-SVLILFGGEDGKRRKLNDLHMFDLKSLT-WLPLH-CTGTGP 146 (617)
Q Consensus 73 ~~v~~yd~~t~~--W~~~~~~g~~P~~R~~~s~~~~-~-~~IYv~GG~~~~~~~~~~v~~yD~~t~~-W~~l~-~~g~~P 146 (617)
+.+.+|++.++. ...+. .++.....|.++.. + ..+|+.. . ..+.+++||+.+.. ..... ..-..+
T Consensus 102 ~~v~v~~~~~~g~~~~~~~---~~~~~~~~~~~~~~p~g~~l~v~~-~-----~~~~v~v~d~~~~g~l~~~~~~~~~~~ 172 (330)
T PRK11028 102 NCVSVSPLDKDGIPVAPIQ---IIEGLEGCHSANIDPDNRTLWVPC-L-----KEDRIRLFTLSDDGHLVAQEPAEVTTV 172 (330)
T ss_pred CeEEEEEECCCCCCCCcee---eccCCCcccEeEeCCCCCEEEEee-C-----CCCEEEEEEECCCCcccccCCCceecC
Confidence 356777765321 12222 12222233444443 3 3566543 2 23579999987632 22100 000111
Q ss_pred CCCcccEEEE-ECCcEEEEEccCCCCCCCCeEEEEECC--CCcEEEeecCCCC----CCCCcceEEEEE--CCEEEEEec
Q 007111 147 SPRSNHVAAL-YDDKNLLIFGGSSKSKTLNDLYSLDFE--TMIWTRIKIRGFH----PSPRAGCCGVLC--GTKWYIAGG 217 (617)
Q Consensus 147 ~~R~~h~a~~-~~~~~LyV~GG~~~~~~~n~v~~yD~~--t~~W~~~~~~g~~----P~~R~~ha~v~~--~~~IyI~GG 217 (617)
.+..-+.++. -+++++|+.-..+ +.+.+||+. +++++.+...... +.++....++.. +..+|+...
T Consensus 173 ~g~~p~~~~~~pdg~~lyv~~~~~-----~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~ 247 (330)
T PRK11028 173 EGAGPRHMVFHPNQQYAYCVNELN-----SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR 247 (330)
T ss_pred CCCCCceEEECCCCCEEEEEecCC-----CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC
Confidence 1111112333 3556688874432 457777775 4455443321111 233433223333 345666522
Q ss_pred CCCCCccceEEEEEC--CCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECC
Q 007111 218 GSRKKRHAETLIFDI--LKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 287 (617)
Q Consensus 218 ~s~~~~~~~v~~yDl--~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~ 287 (617)
. .+.+.+|++ ....++.+...+.. ..++ .+.+. .+..+||+.+.. .+.|.+|+++
T Consensus 248 ~-----~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~----~~~~~-~dg~~l~va~~~----~~~v~v~~~~ 304 (330)
T PRK11028 248 T-----ASLISVFSVSEDGSVLSFEGHQPTE-TQPR----GFNID-HSGKYLIAAGQK----SHHISVYEID 304 (330)
T ss_pred C-----CCeEEEEEEeCCCCeEEEeEEEecc-ccCC----ceEEC-CCCCEEEEEEcc----CCcEEEEEEc
Confidence 1 134555655 44455554432221 1122 12332 234667765542 2356676654
No 221
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=71.32 E-value=80 Score=35.33 Aligned_cols=70 Identities=23% Similarity=0.050 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhccccccchh
Q 007111 517 LADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQV 592 (617)
Q Consensus 517 ~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (617)
.|+.-.++-+|+++|+.--..||.---+ -|+.+-.=.+-+...|||-|.|.|--=.-|+.|=-|-|-.|+
T Consensus 570 ~a~~ag~~s~l~~~v~qs~~~~~q~~~~------~~fs~q~~q~~~~~tlddfq~~~hrdirNl~~ell~Qfhm~~ 639 (673)
T KOG4378|consen 570 DADWAGEFSELRDFVDQSCEKVEQELEY------VTFSNQRLQANKMTTLDDFQVENHRDIRNLALELLLQFHMFM 639 (673)
T ss_pred hhhhhhhhHHHHHHHHhhhhhHHhhccc------chhHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3455568889999998776665543333 334444445666778999999999888789999888888875
No 222
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=71.23 E-value=21 Score=43.16 Aligned_cols=101 Identities=19% Similarity=0.196 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhccccccc
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVH 549 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~ 549 (617)
-=++++++|..+...|..||....- ..+.+++|--.+.-+|.+++-...+++-+|..|.-.++.-.-.+++-+..-
T Consensus 649 wdek~~~~L~~~k~rl~eel~ei~~----~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~ 724 (1141)
T KOG0018|consen 649 WDEKEVDQLKEKKERLLEELKEIQK----RRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFG 724 (1141)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4578899999999999999998877 444888898889999999999999999999999988887777777666655
Q ss_pred CCCcchhhhHHHHHHHHHHHHHhhh
Q 007111 550 SDNVRLEHDVAFLKAVLDDTQKELH 574 (617)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (617)
+.=.-+++++.-...-++++|+...
T Consensus 725 p~i~~i~r~l~~~e~~~~~L~~~~n 749 (1141)
T KOG0018|consen 725 PEISEIKRKLQNREGEMKELEERMN 749 (1141)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555777888888777877777553
No 223
>PRK02224 chromosome segregation protein; Provisional
Probab=71.21 E-value=19 Score=43.55 Aligned_cols=37 Identities=16% Similarity=0.033 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhh
Q 007111 466 SIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKN 502 (617)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~ 502 (617)
.+...+..++..+-.....|+.+++.+...++.+++.
T Consensus 468 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~ 504 (880)
T PRK02224 468 ETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDL 504 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777777777777777776666654443
No 224
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=71.17 E-value=77 Score=31.81 Aligned_cols=57 Identities=14% Similarity=0.075 Sum_probs=39.4
Q ss_pred eEEEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEeeccCCCCCCcceeEEEEECCEEEEEe
Q 007111 50 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFG 114 (617)
Q Consensus 50 hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~P~~R~~~s~~~~~~~IYv~G 114 (617)
..+...++++|.--|..+ .+.+.++|+.+.. |+..- + |+.-.+-..+..++.+|..-
T Consensus 49 QGL~~~~g~i~esTG~yg----~S~ir~~~L~~gq~~~s~~l---~-~~~~FgEGit~~gd~~y~LT 107 (262)
T COG3823 49 QGLEYLDGHILESTGLYG----FSKIRVSDLTTGQEIFSEKL---A-PDTVFGEGITKLGDYFYQLT 107 (262)
T ss_pred cceeeeCCEEEEeccccc----cceeEEEeccCceEEEEeec---C-CccccccceeeccceEEEEE
Confidence 345667888888877633 2468899998665 54432 2 34566778888899999874
No 225
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=70.79 E-value=1.8e+02 Score=32.40 Aligned_cols=180 Identities=13% Similarity=0.139 Sum_probs=86.5
Q ss_pred EEEEEECCCC--cEEEeeccCCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCc
Q 007111 74 SVWTFDTETE--CWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 150 (617)
Q Consensus 74 ~v~~yd~~t~--~W~~~~~~g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~ 150 (617)
.+.+||...+ .-+.+. ..+... ++++. ..+.+++.|+.+.. |.++|+.+.+-... +..-..
T Consensus 226 tiriwd~~~~~~~~~~l~---gH~~~v--~~~~f~p~g~~i~Sgs~D~t------vriWd~~~~~~~~~-----l~~hs~ 289 (456)
T KOG0266|consen 226 TLRIWDLKDDGRNLKTLK---GHSTYV--TSVAFSPDGNLLVSGSDDGT------VRIWDVRTGECVRK-----LKGHSD 289 (456)
T ss_pred eEEEeeccCCCeEEEEec---CCCCce--EEEEecCCCCEEEEecCCCc------EEEEeccCCeEEEe-----eeccCC
Confidence 5777887444 223332 223333 23333 24588888887654 88999988654433 222222
Q ss_pred ccEEEEE--CCcEEEEEccCCCCCCCCeEEEEECCCCcEE--EeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccce
Q 007111 151 NHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWT--RIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAE 226 (617)
Q Consensus 151 ~h~a~~~--~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~--~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~ 226 (617)
+.+++.+ ++. +++.|.+++ .+.+||..++.-. ...... ..+.....+....+..|++.+..+. .
T Consensus 290 ~is~~~f~~d~~-~l~s~s~d~-----~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~fsp~~~~ll~~~~d~----~ 357 (456)
T KOG0266|consen 290 GISGLAFSPDGN-LLVSASYDG-----TIRVWDLETGSKLCLKLLSGA--ENSAPVTSVQFSPNGKYLLSASLDR----T 357 (456)
T ss_pred ceEEEEECCCCC-EEEEcCCCc-----cEEEEECCCCceeeeecccCC--CCCCceeEEEECCCCcEEEEecCCC----e
Confidence 2333433 455 777776654 4899999887743 222211 1221122233334445555443322 3
Q ss_pred EEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 227 TLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 227 v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
+-.+|+....-...-...... .+..++.+... .+.+++.|+.+ ..|.++|+.+..
T Consensus 358 ~~~w~l~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~i~sg~~d----~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 358 LKLWDLRSGKSVGTYTGHSNL--VRCIFSPTLST---GGKLIYSGSED----GSVYVWDSSSGG 412 (456)
T ss_pred EEEEEccCCcceeeecccCCc--ceeEecccccC---CCCeEEEEeCC----ceEEEEeCCccc
Confidence 455565543221111100010 12233333222 35566666654 368888887643
No 226
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=70.57 E-value=11 Score=45.57 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=14.4
Q ss_pred cccccchhhHHHHHHHHhhh
Q 007111 585 ARAFQLQVEVFHLKQRLQSL 604 (617)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~ 604 (617)
-||+.||..+.+.+..++++
T Consensus 532 ~~a~~l~~~~~~s~~d~s~l 551 (1041)
T KOG0243|consen 532 DRATKLRRSLEESQDDLSSL 551 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34888888777777777654
No 227
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=70.53 E-value=23 Score=40.85 Aligned_cols=81 Identities=17% Similarity=0.244 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhh--hccchhhhccccccchhhHHHHH
Q 007111 521 LKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHS--TRGVLAGERARAFQLQVEVFHLK 598 (617)
Q Consensus 521 ~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 598 (617)
.++++.|++++..++..|++..+.=+-...+..+....+.-++..+.+++..+.. --|+-..=...-|.++-++..|+
T Consensus 382 ~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~ 461 (569)
T PRK04778 382 QEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALA 461 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3444555555656655555555544434444444444455555555544443322 22333333333344444555555
Q ss_pred HHH
Q 007111 599 QRL 601 (617)
Q Consensus 599 ~~~ 601 (617)
+.|
T Consensus 462 ~~L 464 (569)
T PRK04778 462 EEL 464 (569)
T ss_pred HHh
Confidence 444
No 228
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=70.32 E-value=62 Score=33.89 Aligned_cols=84 Identities=24% Similarity=0.367 Sum_probs=53.5
Q ss_pred chHHHHHHHHHH-------HHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHH--------------HH
Q 007111 465 SSIYQFYESKMA-------ALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSL--------------KE 523 (617)
Q Consensus 465 ~~~~~~~~~~~~-------~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~ 523 (617)
+.+...|+.++. ++...++.|+.+++.+....+...+++....+-++.|+..+...- .+
T Consensus 46 ~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~ 125 (312)
T PF00038_consen 46 SRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQ 125 (312)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHH
Confidence 556666666555 456668888888888888888887777777777777776555432 33
Q ss_pred HHHHHHHHhhhHHhHH-hhhcccccc
Q 007111 524 MELLKEKLAGLELAQE-EANSLSNIV 548 (617)
Q Consensus 524 ~~~lkek~~~~e~~qe-~~~~~~~~~ 548 (617)
++-|++.++-+....+ |...|...+
T Consensus 126 i~~L~eEl~fl~~~heeEi~~L~~~~ 151 (312)
T PF00038_consen 126 IQSLKEELEFLKQNHEEEIEELREQI 151 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTT-
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 4456666666655443 344444433
No 229
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=69.73 E-value=13 Score=41.02 Aligned_cols=35 Identities=37% Similarity=0.504 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHhHHhhh--------cccccccCC
Q 007111 517 LADSLKEMELLKEKLAGLELAQEEAN--------SLSNIVHSD 551 (617)
Q Consensus 517 ~~~~~~~~~~lkek~~~~e~~qe~~~--------~~~~~~~~~ 551 (617)
......|++.|++++.++|.+.++.. ++-||+|.+
T Consensus 70 ~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~ipNi~~~~ 112 (429)
T COG0172 70 AEELIAEVKELKEKLKELEAALDELEAELDTLLLTIPNIPHES 112 (429)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCccc
Confidence 34456677778888877776655443 488999965
No 230
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=69.71 E-value=2.1 Score=37.59 Aligned_cols=79 Identities=30% Similarity=0.412 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhcccc
Q 007111 508 KSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARA 587 (617)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (617)
+-|.++|..+..+..|+|.|-..|= ||||+ ||.. -| .+-+-++.=.+.++++|+-+++.|..
T Consensus 8 ~~r~~ae~~~~~ie~ElEeLTasLF------eEAN~---MVa~--ar--~e~~~~e~k~~~le~~l~e~~~~l~~----- 69 (100)
T PF06428_consen 8 ERREEAEQEKEQIESELEELTASLF------EEANK---MVAD--AR--RERAALEEKNEQLEKQLKEKEALLES----- 69 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH---HHHH--HH--HHHHHHHHHHHHHHHCTTHHCHCCCH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH---HHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 3455566666666666666654431 33343 2311 11 12222333345566677777766664
Q ss_pred ccchhhHHHHHHHHhhhhc
Q 007111 588 FQLQVEVFHLKQRLQSLEN 606 (617)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~ 606 (617)
||.+|-+||..+++|+.
T Consensus 70 --lq~qL~~LK~v~~~~~~ 86 (100)
T PF06428_consen 70 --LQAQLKELKTVMESMES 86 (100)
T ss_dssp --CTSSSSHHHHCTTT---
T ss_pred --HHHHHHHHHHHHHHccc
Confidence 56777888888888763
No 231
>smart00284 OLF Olfactomedin-like domains.
Probab=69.42 E-value=1.4e+02 Score=30.72 Aligned_cols=162 Identities=15% Similarity=0.079 Sum_probs=82.8
Q ss_pred CCEEEEEcccCCCCCCceEEEEEEC----CCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEEC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDT----ETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL 131 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~----~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~ 131 (617)
++++|++.|.. ...+.++.|.- ....+...- .+|.+-.|...++++|.+|..-. ....+..||+
T Consensus 34 ~~~~wv~~~~~---~~~~~v~ey~~~~~f~~~~~~~~~---~Lp~~~~GtG~VVYngslYY~~~------~s~~iiKydL 101 (255)
T smart00284 34 KSLYWYMPLNT---RVLRSVREYSSMSDFQMGKNPTDH---PLPHAGQGTGVVVYNGSLYFNKF------NSHDICRFDL 101 (255)
T ss_pred CceEEEEcccc---CCCcEEEEecCHHHHhccCCceEE---ECCCccccccEEEECceEEEEec------CCccEEEEEC
Confidence 56788886652 12345667643 233332222 36777777788889999998632 2467999999
Q ss_pred CCCcEEEeecCCCCCCCC---------cccEEE--EECCcEEEEE-ccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCC
Q 007111 132 KSLTWLPLHCTGTGPSPR---------SNHVAA--LYDDKNLLIF-GGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSP 199 (617)
Q Consensus 132 ~t~~W~~l~~~g~~P~~R---------~~h~a~--~~~~~~LyV~-GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~ 199 (617)
.+.+-.... .+|.+. .+++-. .++...|+++ ....... .=.|-++|+.+-.-.+....+ .+.+
T Consensus 102 ~t~~v~~~~---~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g-~ivvSkLnp~tL~ve~tW~T~-~~k~ 176 (255)
T smart00284 102 TTETYQKEP---LLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAG-KIVISKLNPATLTIENTWITT-YNKR 176 (255)
T ss_pred CCCcEEEEE---ecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCC-CEEEEeeCcccceEEEEEEcC-CCcc
Confidence 998754221 233221 112111 1232224443 2221110 112456777765554444431 1222
Q ss_pred CcceEEEEECCEEEEEecCCCCCccceEEEEECCCCc
Q 007111 200 RAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 200 R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
..+ -+..+-|.+|++-... .....-.+.||..+.+
T Consensus 177 sa~-naFmvCGvLY~~~s~~-~~~~~I~yayDt~t~~ 211 (255)
T smart00284 177 SAS-NAFMICGILYVTRSLG-SKGEKVFYAYDTNTGK 211 (255)
T ss_pred ccc-ccEEEeeEEEEEccCC-CCCcEEEEEEECCCCc
Confidence 222 3333467888884211 1111224899988765
No 232
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=69.41 E-value=41 Score=35.99 Aligned_cols=101 Identities=12% Similarity=0.155 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcc-----c
Q 007111 471 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSL-----S 545 (617)
Q Consensus 471 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~-----~ 545 (617)
...++..++.++..+++|++.....++..+..|. ++-..|+.--......+..|...++..|...++.+.- .
T Consensus 82 ~~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~---~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l~~~~~~~~~ 158 (333)
T PF05816_consen 82 AKNSLERYFAKYQSVQSQIDKIIAELESGQDELL---RDNAMLDQLYEKNWEYYQELEKYIAAGELKLEELEAELLPALQ 158 (333)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 3589999999999999999999999999888764 4444444444445555566666666666665554431 1
Q ss_pred ccccCCCcchhhhHHHHHHHHHHHHHhhhh
Q 007111 546 NIVHSDNVRLEHDVAFLKAVLDDTQKELHS 575 (617)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (617)
.-+. +|--...+++-+..+++-+.|-+|-
T Consensus 159 ~~~~-~d~~~~q~~~~~~~~l~~leqRi~D 187 (333)
T PF05816_consen 159 ADAE-GDQMDAQELADLEQALFRLEQRIQD 187 (333)
T ss_pred hccc-cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122 4445557788888888888775553
No 233
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=69.37 E-value=9.3 Score=41.72 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHhhhhhccchhhhcccccc
Q 007111 557 HDVAFLKAVLDDTQKELHSTRGVLAGERARAFQ 589 (617)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (617)
+|+.-||.-|.++..-+. -..-||+|-.+
T Consensus 276 ~Ei~~LKqeLa~~EEK~~----Yqs~eRaRdi~ 304 (395)
T PF10267_consen 276 NEIYNLKQELASMEEKMA----YQSYERARDIW 304 (395)
T ss_pred HHHHHHHHHHHhHHHHHH----HHHHHHHhHHH
Confidence 455555554444432111 23456666655
No 234
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=69.32 E-value=23 Score=43.10 Aligned_cols=39 Identities=10% Similarity=0.117 Sum_probs=20.4
Q ss_pred eEEEEECCEEEEEcccCCCCCCceEEEEEECCCCc-EEEe
Q 007111 50 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC-WSVV 88 (617)
Q Consensus 50 hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~-W~~~ 88 (617)
+.-+.-+..+..+-+.-.....++-+.+||+.+.. |..+
T Consensus 592 f~r~~e~~~l~f~~~~ip~sm~Ydv~ir~~~~~~~~wen~ 631 (1758)
T KOG0994|consen 592 FVRVPEGTTLEFTVPIIPPSMEYDVLIRYDPRTPKLWENA 631 (1758)
T ss_pred eeecCCCceeeeecCCCCcccccchheeccCCCcchhhhh
Confidence 33333343333333333555566778888877654 6544
No 235
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.28 E-value=20 Score=36.98 Aligned_cols=9 Identities=56% Similarity=0.645 Sum_probs=5.5
Q ss_pred hhhcccccc
Q 007111 581 AGERARAFQ 589 (617)
Q Consensus 581 ~~~~~~~~~ 589 (617)
-.+|+||-|
T Consensus 103 l~~raRAmq 111 (265)
T COG3883 103 LKKRARAMQ 111 (265)
T ss_pred HHHHHHHHH
Confidence 346777755
No 236
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=69.13 E-value=33 Score=30.05 Aligned_cols=33 Identities=24% Similarity=0.213 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHh
Q 007111 468 YQFYESKMAALIRKNGILEGQLAAALVNREAAE 500 (617)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~ 500 (617)
||.|..+++.+......|+.|+.......++.+
T Consensus 8 ~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~ 40 (105)
T cd00632 8 LQQLQQQLQAYIVQRQKVEAQLNENKKALEELE 40 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888899999999999999965555554444
No 237
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=69.09 E-value=2e+02 Score=32.24 Aligned_cols=140 Identities=14% Similarity=0.092 Sum_probs=79.1
Q ss_pred EEEEEECCCCcEEEeeccCCCCCCcceeE------------EEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeec
Q 007111 74 SVWTFDTETECWSVVEAKGDIPVARSGHT------------VVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHC 141 (617)
Q Consensus 74 ~v~~yd~~t~~W~~~~~~g~~P~~R~~~s------------~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~ 141 (617)
++|.|||.+..-+++.. .+|..|..-- .+..+|..|++=. -...+++++-.+--.++.
T Consensus 288 dIylydP~td~lekldI--~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-------RGkaFi~~~~~~~~iqv~- 357 (668)
T COG4946 288 DIYLYDPETDSLEKLDI--GLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-------RGKAFIMRPWDGYSIQVG- 357 (668)
T ss_pred cEEEeCCCcCcceeeec--CCccccccccccccCHHHhhhhhccCCCcEEEEEe-------cCcEEEECCCCCeeEEcC-
Confidence 59999999999888865 3343332111 1122333333321 123556654433333332
Q ss_pred CCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCC
Q 007111 142 TGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK 221 (617)
Q Consensus 142 ~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~ 221 (617)
..-.-|| .-...+.+ -.++|-.++ +.+.+||..+..-..+.. +.++.....+.-+++..+++...
T Consensus 358 --~~~~VrY--~r~~~~~e-~~vigt~dg----D~l~iyd~~~~e~kr~e~----~lg~I~av~vs~dGK~~vvaNdr-- 422 (668)
T COG4946 358 --KKGGVRY--RRIQVDPE-GDVIGTNDG----DKLGIYDKDGGEVKRIEK----DLGNIEAVKVSPDGKKVVVANDR-- 422 (668)
T ss_pred --CCCceEE--EEEccCCc-ceEEeccCC----ceEEEEecCCceEEEeeC----CccceEEEEEcCCCcEEEEEcCc--
Confidence 1111233 33333445 567776665 358899998887766654 45565544444477766665432
Q ss_pred CccceEEEEECCCCcEEEee
Q 007111 222 KRHAETLIFDILKGEWSVAI 241 (617)
Q Consensus 222 ~~~~~v~~yDl~~~~W~~l~ 241 (617)
-++|++|++++.-+.+.
T Consensus 423 ---~el~vididngnv~~id 439 (668)
T COG4946 423 ---FELWVIDIDNGNVRLID 439 (668)
T ss_pred ---eEEEEEEecCCCeeEec
Confidence 47999999999887765
No 238
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=68.83 E-value=53 Score=32.23 Aligned_cols=71 Identities=23% Similarity=0.289 Sum_probs=38.7
Q ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhh
Q 007111 497 EAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKEL 573 (617)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (617)
-++|+..........+|+.++.+..+++..|+.+...++..-++.... .+.+.+.+|+|||..-..+..+|
T Consensus 116 l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~------~~k~~~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 116 LQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQE------EEKKHQEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443444444555555555566666666666666665544443332 23455677888887655444443
No 239
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=68.48 E-value=49 Score=39.00 Aligned_cols=135 Identities=25% Similarity=0.367 Sum_probs=86.0
Q ss_pred chH-HHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH------------HHHHH
Q 007111 465 SSI-YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMEL------------LKEKL 531 (617)
Q Consensus 465 ~~~-~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------lkek~ 531 (617)
+|+ |.-.+-+|..|-.+...|..||++|...|+-||+.|-.+|.+-|.=-......-||... |--.|
T Consensus 119 sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~~~~~~~~~~~~~~~~~~ 198 (717)
T PF09730_consen 119 SQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQHLNIESISYLSNLAISL 198 (717)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhhcc
Confidence 344 35777788889999999999999999999999999999998876533333333344433 33333
Q ss_pred hhhHHhH------------Hhhhc----c-----------------cccccCC-----Cc-----------------chh
Q 007111 532 AGLELAQ------------EEANS----L-----------------SNIVHSD-----NV-----------------RLE 556 (617)
Q Consensus 532 ~~~e~~q------------e~~~~----~-----------------~~~~~~~-----~~-----------------~~~ 556 (617)
.|+-... |+.+. . ++..|+. .+ .+|
T Consensus 199 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lv~DLfSEl~~~EiqKL~qQL~qve 278 (717)
T PF09730_consen 199 DGLKFSEDPRAATEPNNDDEEENGGLNGGPGLAKGNGDNRMSTPRKSESFSPAPSLVSDLFSELNLSEIQKLKQQLLQVE 278 (717)
T ss_pred cccccccccccccCCCCchhhhcchhhccchhcccccccccCCCCCCCCCCCCCcccchhhhhcchHHHHHHHHHHHHHh
Confidence 3331111 11111 1 1111110 00 145
Q ss_pred hhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhhc
Q 007111 557 HDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLEN 606 (617)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (617)
+|=+-|.+.|.++|+.|..|+|.|. ..|-.|-.|.+.|..|-.
T Consensus 279 ~EK~~L~~~L~e~Q~qLe~a~~als-------~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 279 REKSSLLSNLQESQKQLEHAQGALS-------EQQEKINRLTEQLDALRK 321 (717)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhh
Confidence 6667788899999999999999987 334556667777666654
No 240
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=68.42 E-value=25 Score=41.84 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=10.2
Q ss_pred HhchhhHhHHHHhhcHHHHhhh
Q 007111 481 KNGILEGQLAAALVNREAAEKN 502 (617)
Q Consensus 481 ~~~~~~~q~~~~~~~~~~~~~~ 502 (617)
-..-|+.||+..-...++||++
T Consensus 195 a~~~L~~ql~~l~~~l~~aE~~ 216 (754)
T TIGR01005 195 AADFLAPEIADLSKQSRDAEAE 216 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 241
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=68.02 E-value=17 Score=40.69 Aligned_cols=57 Identities=25% Similarity=0.293 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhhhcc
Q 007111 508 KSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRG 578 (617)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (617)
..+|.++.|..---.|.+.|..+|.-+|..++. +++++.-++.-+.-+|+||..||.
T Consensus 427 ~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~--------------l~eeL~~a~~~i~~LqDEL~TTr~ 483 (518)
T PF10212_consen 427 SQLQHADSKAVHFYAECRALQKRLESAEKEKES--------------LEEELKEANQNISRLQDELETTRR 483 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777777777887777777654443 677777777788888888888874
No 242
>PLN02320 seryl-tRNA synthetase
Probab=67.90 E-value=26 Score=39.58 Aligned_cols=69 Identities=25% Similarity=0.291 Sum_probs=35.1
Q ss_pred hhHhHHHHhhcHHHHhhhhhhhh--hhHHHHHHHHHHHHHHHHHHHHHHhhhHH-hHHhhhcccccccCCCc
Q 007111 485 LEGQLAAALVNREAAEKNFSSVL--KSRQEMEKKLADSLKEMELLKEKLAGLEL-AQEEANSLSNIVHSDNV 553 (617)
Q Consensus 485 ~~~q~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~lkek~~~~e~-~qe~~~~~~~~~~~~~~ 553 (617)
+..|++...+.+-+.-|.+.... ..++++..+...+.+++..|++++..+|. -++....|-|++|.+=.
T Consensus 105 ~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h~~VP 176 (502)
T PLN02320 105 LQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPDVP 176 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCC
Confidence 33444444444444444332210 23444544444444555555555554433 23567789999998543
No 243
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=67.80 E-value=71 Score=34.66 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=10.0
Q ss_pred chhhHHHHHHHHhhhhccCC
Q 007111 590 LQVEVFHLKQRLQSLENRAP 609 (617)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~ 609 (617)
++.++..++.+|....=|||
T Consensus 258 ~~~~l~~~~~~l~~~~i~AP 277 (423)
T TIGR01843 258 LRERLNKARDRLQRLIIRSP 277 (423)
T ss_pred HHHHHHHHHHHHhhcEEECC
Confidence 34445555555555444444
No 244
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=67.42 E-value=72 Score=36.27 Aligned_cols=126 Identities=18% Similarity=0.150 Sum_probs=64.1
Q ss_pred CcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCC
Q 007111 97 ARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTL 174 (617)
Q Consensus 97 ~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~ 174 (617)
|+.+.-+++. .-.||+.| ..+++|+||+..+.|...- ....+-..+..+.--.. |+.+||.++.
T Consensus 133 P~~GRDm~y~~~scDly~~g-------sg~evYRlNLEqGrfL~P~---~~~~~~lN~v~in~~hg-Lla~Gt~~g~--- 198 (703)
T KOG2321|consen 133 PKFGRDMKYHKPSCDLYLVG-------SGSEVYRLNLEQGRFLNPF---ETDSGELNVVSINEEHG-LLACGTEDGV--- 198 (703)
T ss_pred CcCCccccccCCCccEEEee-------cCcceEEEEcccccccccc---ccccccceeeeecCccc-eEEecccCce---
Confidence 3444444443 23566654 3467999999999997431 11111111111111234 8889887653
Q ss_pred CeEEEEECCCCc-EEEeecC---CCCCCCCcc--eEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeec
Q 007111 175 NDLYSLDFETMI-WTRIKIR---GFHPSPRAG--CCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 242 (617)
Q Consensus 175 n~v~~yD~~t~~-W~~~~~~---g~~P~~R~~--ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~ 242 (617)
+..||+.+.. ...+... ...|..-.. .+++.+ ++.+-+.=|.+. ..+++||+.+.+-..+..
T Consensus 199 --VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~----G~v~iyDLRa~~pl~~kd 267 (703)
T KOG2321|consen 199 --VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTST----GSVLIYDLRASKPLLVKD 267 (703)
T ss_pred --EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccC----CcEEEEEcccCCceeecc
Confidence 8888886543 2222211 111222111 233334 545555444432 358999998776555543
No 245
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=67.42 E-value=27 Score=40.89 Aligned_cols=65 Identities=38% Similarity=0.410 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhh-------hhhhh-hhhHH-HHHHHHHHHHHHHHHHHHHHhhhHHh
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEK-------NFSSV-LKSRQ-EMEKKLADSLKEMELLKEKLAGLELA 537 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~-------~~~~~-~~~~~-~~~~~~~~~~~~~~~lkek~~~~e~~ 537 (617)
|-...+.++|-|+--+|++||-. +|.+|| |+-++ |+|.- .|+.+|.+.+|.+|+|+-|-+.|-..
T Consensus 390 QplrsENaqLrRrLrilnqqlre----qe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~ 463 (861)
T PF15254_consen 390 QPLRSENAQLRRRLRILNQQLRE----QEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKV 463 (861)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHH----HHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHH
Confidence 67778889999999999999865 777776 34443 55543 36788889999999999887776544
No 246
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=67.30 E-value=1.5e+02 Score=30.25 Aligned_cols=156 Identities=13% Similarity=0.174 Sum_probs=88.9
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCCcccE----EEEEC-CcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCC
Q 007111 125 DLHMFDLKSLTWLPLHCTGTGPSPRSNHV----AALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSP 199 (617)
Q Consensus 125 ~v~~yD~~t~~W~~l~~~g~~P~~R~~h~----a~~~~-~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~ 199 (617)
.++.||+.+.+-.+- ..+|. ++.++ ...+++.|+++. .+-.||..+...+.+... ...
T Consensus 82 ~v~vwDV~TGkv~Rr---------~rgH~aqVNtV~fNeesSVv~SgsfD~-----s~r~wDCRS~s~ePiQil---dea 144 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRR---------FRGHLAQVNTVRFNEESSVVASGSFDS-----SVRLWDCRSRSFEPIQIL---DEA 144 (307)
T ss_pred eEEEEEcccCeeeee---------cccccceeeEEEecCcceEEEeccccc-----eeEEEEcccCCCCccchh---hhh
Confidence 488999988763321 11222 22333 334777777764 488899988888877765 456
Q ss_pred CcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCC
Q 007111 200 RAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSN 279 (617)
Q Consensus 200 R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~ 279 (617)
+.+-..+.+.++.+|.|-..+ .+..||+...+-..= ..++....+....++...++|-.++
T Consensus 145 ~D~V~Si~v~~heIvaGS~DG-----tvRtydiR~G~l~sD----------y~g~pit~vs~s~d~nc~La~~l~s---- 205 (307)
T KOG0316|consen 145 KDGVSSIDVAEHEIVAGSVDG-----TVRTYDIRKGTLSSD----------YFGHPITSVSFSKDGNCSLASSLDS---- 205 (307)
T ss_pred cCceeEEEecccEEEeeccCC-----cEEEEEeecceeehh----------hcCCcceeEEecCCCCEEEEeeccc----
Confidence 667777777888777765543 377899877653331 1222222222223344555665442
Q ss_pred eEEEEECCCCcc--------ccccccccCccCCceeeeccCCCCc
Q 007111 280 QVEVLSIEKNES--------SMGRRSTPNAKGPGQLLFEKRSSST 316 (617)
Q Consensus 280 dV~vyd~~~~~W--------~~~w~~~~~~~~~~v~vfGG~~~~~ 316 (617)
.+-.+|.++.+- ...+..-+........||+|+-+..
T Consensus 206 tlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~ 250 (307)
T KOG0316|consen 206 TLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGK 250 (307)
T ss_pred eeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCce
Confidence 455666666542 1112222233566667888886644
No 247
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=67.28 E-value=33 Score=31.40 Aligned_cols=59 Identities=12% Similarity=0.164 Sum_probs=28.9
Q ss_pred HHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007111 477 ALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 477 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e 535 (617)
+|..|-..|..+|++..+--++..+++..+-.+-..+...+..+-.-++.|.-|+..+|
T Consensus 65 hLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 65 HLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555555444444444444444444444444444444444
No 248
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=67.26 E-value=48 Score=40.61 Aligned_cols=24 Identities=42% Similarity=0.446 Sum_probs=14.6
Q ss_pred hhccccccchhhHHH-------HHHHHhhhh
Q 007111 582 GERARAFQLQVEVFH-------LKQRLQSLE 605 (617)
Q Consensus 582 ~~~~~~~~~~~~~~~-------~~~~~~~~~ 605 (617)
.-|.||=||+-|--. ..++|+-||
T Consensus 1686 ~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe 1716 (1758)
T KOG0994|consen 1686 AARERAEQLRTEAEKLLGQANEKLDRLKDLE 1716 (1758)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777755443 346666666
No 249
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=67.19 E-value=39 Score=43.11 Aligned_cols=67 Identities=13% Similarity=0.208 Sum_probs=35.8
Q ss_pred HHHHHH-HHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007111 468 YQFYES-KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 534 (617)
Q Consensus 468 ~~~~~~-~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~ 534 (617)
|+.|.. .......+.-+...++.++....+.++..+..+-+.+.+++.++....++++.|++++..+
T Consensus 256 y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l 323 (1353)
T TIGR02680 256 YRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEAL 323 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444 3333333444445555555555555555555555555556666666655655555555554
No 250
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=67.16 E-value=14 Score=41.68 Aligned_cols=137 Identities=18% Similarity=0.209 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHHHHHhchhhHhHHHHhhc--HHH-Hhhhhhhhhhh-------HHHHHHHHHHHHHHHHHH----HHHH
Q 007111 466 SIYQFYESKMAALIRKNGILEGQLAAALVN--REA-AEKNFSSVLKS-------RQEMEKKLADSLKEMELL----KEKL 531 (617)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~--~~~-~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l----kek~ 531 (617)
++++.--.++.++-..++.|+.|+..+... +++ .+|..+.+-.+ -.+|+.|.+...+.+++| ++|-
T Consensus 228 ~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kE 307 (581)
T KOG0995|consen 228 KYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKE 307 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 444545567788888888888888854432 222 22222211111 123334444444444443 3444
Q ss_pred hhhHHhHHhhhcccccccCCCcchh------hhHHHHHHHHHHHHHhhhhhccch-hhhc--cc-cccchhhHHHHHHHH
Q 007111 532 AGLELAQEEANSLSNIVHSDNVRLE------HDVAFLKAVLDDTQKELHSTRGVL-AGER--AR-AFQLQVEVFHLKQRL 601 (617)
Q Consensus 532 ~~~e~~qe~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~-~~~~~~~~~~~~~~~ 601 (617)
...|.-|++--.|.|+|.--++.-| +|---|+-+|++.+.|+.+-+-.+ -.++ .+ .=+++-.++|+.+.+
T Consensus 308 eE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~ 387 (581)
T KOG0995|consen 308 EEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLI 387 (581)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667777778888877766554 566667777777777776654332 1222 22 224555677776655
Q ss_pred h
Q 007111 602 Q 602 (617)
Q Consensus 602 ~ 602 (617)
+
T Consensus 388 ~ 388 (581)
T KOG0995|consen 388 R 388 (581)
T ss_pred H
Confidence 4
No 251
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=66.86 E-value=2.1e+02 Score=31.76 Aligned_cols=121 Identities=15% Similarity=0.110 Sum_probs=68.4
Q ss_pred ceEEEEECCEEEEE---cccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCe
Q 007111 49 GHSLISWGKKVLLV---GGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLND 125 (617)
Q Consensus 49 ~hs~v~~g~~lyV~---GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~ 125 (617)
.+++..+++.+=+. |-|...+...+.+|++|-..+---++. |=-|..|. +++-..++..|++-=+ -.+-
T Consensus 379 ~f~~deyngylRvaTt~~dW~~~de~~N~vYilDe~lnvvGklt--Gl~~gERI-YAvRf~gdv~yiVTfr-----qtDP 450 (603)
T COG4880 379 SFDGDEYNGYLRVATTLSDWTSEDEPVNAVYILDENLNVVGKLT--GLAPGERI-YAVRFVGDVLYIVTFR-----QTDP 450 (603)
T ss_pred cccCcccceEEEEEeeecccccCCCccceeEEEcCCCcEEEEEe--ccCCCceE-EEEEEeCceEEEEEEe-----ccCc
Confidence 45666666665444 566666677889999998887665555 22344554 4556678888877422 2445
Q ss_pred EEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEEC
Q 007111 126 LHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDF 182 (617)
Q Consensus 126 v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~ 182 (617)
++..|...-.--++- |.+..|-+..-.--++...++=+|-..++ -.+-.||.
T Consensus 451 lfviDlsNPenPkvl--GeLKIPGfS~YLHpigen~~lGvG~~~g~---vKiSLFdi 502 (603)
T COG4880 451 LFVIDLSNPENPKVL--GELKIPGFSEYLHPIGENRLLGVGAYQGG---VKISLFDI 502 (603)
T ss_pred eEEEEcCCCCCCcee--EEEecCCchhhccccCCCcEEEeecccCC---ceEEEEec
Confidence 778887654433332 34444433333333455545555555432 13445555
No 252
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=66.80 E-value=1.9e+02 Score=31.24 Aligned_cols=246 Identities=11% Similarity=0.075 Sum_probs=121.1
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCC---CCCCceEEEEEECCCCcEEE-ee
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTD---SGSDRVSVWTFDTETECWSV-VE 89 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~---~~~~~~~v~~yd~~t~~W~~-~~ 89 (617)
+.+.++|..+.+-...-+ ....+| +.+...+..+|+.-.+.. .+...+.+.+||+.+.+-.. ++
T Consensus 27 ~~v~ViD~~~~~v~g~i~----------~G~~P~--~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~ 94 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTD----------GGFLPN--PVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIE 94 (352)
T ss_pred ceEEEEECCCCEEEEEEE----------ccCCCc--eeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEc
Confidence 789999988865432211 111222 233334568999876422 22345679999999987543 33
Q ss_pred ccCCCCCCc-----c--eeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEE-eecCC-C--CCCCCcccEEEEEC
Q 007111 90 AKGDIPVAR-----S--GHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP-LHCTG-T--GPSPRSNHVAALYD 158 (617)
Q Consensus 90 ~~g~~P~~R-----~--~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~-l~~~g-~--~P~~R~~h~a~~~~ 158 (617)
. + +.+| . .+++...+..+|+. .. ...+.+-+.|..+.+-.. ++..+ . .|.+...+.+.+.+
T Consensus 95 ~-p--~~p~~~~~~~~~~~~ls~dgk~l~V~-n~----~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~D 166 (352)
T TIGR02658 95 L-P--EGPRFLVGTYPWMTSLTPDNKTLLFY-QF----SPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRD 166 (352)
T ss_pred c-C--CCchhhccCccceEEECCCCCEEEEe-cC----CCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeec
Confidence 1 1 2223 1 22222234467765 12 235778999998887543 32110 0 12222222222334
Q ss_pred CcEEE---------------EEcc------C-----C-CC-----CCCCeEEEEECCC------CcEEEeecCCC----C
Q 007111 159 DKNLL---------------IFGG------S-----S-KS-----KTLNDLYSLDFET------MIWTRIKIRGF----H 196 (617)
Q Consensus 159 ~~~Ly---------------V~GG------~-----~-~~-----~~~n~v~~yD~~t------~~W~~~~~~g~----~ 196 (617)
+..++ +|-+ . . ++ .+.+.++..|+.. ..|..+..... .
T Consensus 167 g~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wr 246 (352)
T TIGR02658 167 GSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWR 246 (352)
T ss_pred CceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccC
Confidence 44333 2323 0 0 01 1235677777432 23554432110 1
Q ss_pred CCCCcceEEEEECCEEEEE--ecC--CCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcC
Q 007111 197 PSPRAGCCGVLCGTKWYIA--GGG--SRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGG 272 (617)
Q Consensus 197 P~~R~~ha~v~~~~~IyI~--GG~--s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG 272 (617)
|.+.-..+...-++++||. ||. +....-++++++|..+.+-..-- + .++.-+++ .+..+++..+|+.=+
T Consensus 247 P~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i--~----vG~~~~~i-avS~Dgkp~lyvtn~ 319 (352)
T TIGR02658 247 PGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKI--E----LGHEIDSI-NVSQDAKPLLYALST 319 (352)
T ss_pred CCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEE--e----CCCceeeE-EECCCCCeEEEEeCC
Confidence 1111112222236789984 222 11233468999998775533321 1 23323333 344455557887665
Q ss_pred CCCCCCCeEEEEECCCCc
Q 007111 273 IKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 273 ~~~~~~~dV~vyd~~~~~ 290 (617)
. .++|.++|..+.+
T Consensus 320 ~----s~~VsViD~~t~k 333 (352)
T TIGR02658 320 G----DKTLYIFDAETGK 333 (352)
T ss_pred C----CCcEEEEECcCCe
Confidence 3 3479999998876
No 253
>PRK04863 mukB cell division protein MukB; Provisional
Probab=66.66 E-value=44 Score=42.89 Aligned_cols=12 Identities=25% Similarity=0.313 Sum_probs=6.6
Q ss_pred HhhhcccccccC
Q 007111 539 EEANSLSNIVHS 550 (617)
Q Consensus 539 e~~~~~~~~~~~ 550 (617)
+.++.+|....-
T Consensus 424 e~~~~~~~~~~~ 435 (1486)
T PRK04863 424 ERAKQLCGLPDL 435 (1486)
T ss_pred HHHHHHhCCCCC
Confidence 455667764443
No 254
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=66.44 E-value=17 Score=42.95 Aligned_cols=51 Identities=29% Similarity=0.259 Sum_probs=22.6
Q ss_pred hchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 007111 482 NGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLA 532 (617)
Q Consensus 482 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~ 532 (617)
++.|..||..+....+.+|.+..+..+-.++|+..|+..+.|.+.|++++.
T Consensus 468 ~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~ 518 (980)
T KOG0980|consen 468 NTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLS 518 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333333333334444444444455555555555555555533
No 255
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=66.42 E-value=2.6e+02 Score=32.55 Aligned_cols=161 Identities=15% Similarity=0.272 Sum_probs=86.8
Q ss_pred ceEEEEECCEEEEEcccCCCCCCceEEEEEECCCC-cEEEeeccCCCCCCcceeEEEE--E-CCEEEEEeecCCCCCccC
Q 007111 49 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETE-CWSVVEAKGDIPVARSGHTVVR--A-SSVLILFGGEDGKRRKLN 124 (617)
Q Consensus 49 ~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~~g~~P~~R~~~s~~~--~-~~~IYv~GG~~~~~~~~~ 124 (617)
.+++..-++.++.+|-.. ...+|++.+..+ .-..+. ++|..+.+.+... . ++++++.. ....
T Consensus 386 s~~aiSPdg~~Ia~st~~-----~~~iy~L~~~~~vk~~~v~---~~~~~~~~a~~i~ftid~~k~~~~s------~~~~ 451 (691)
T KOG2048|consen 386 SCAAISPDGNLIAISTVS-----RTKIYRLQPDPNVKVINVD---DVPLALLDASAISFTIDKNKLFLVS------KNIF 451 (691)
T ss_pred eeeccCCCCCEEEEeecc-----ceEEEEeccCcceeEEEec---cchhhhccceeeEEEecCceEEEEe------cccc
Confidence 344444466666665431 123555555442 223333 6777775554443 3 45666654 1345
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCCcc---cEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCc
Q 007111 125 DLHMFDLKSLTWLPLHCTGTGPSPRSN---HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRA 201 (617)
Q Consensus 125 ~v~~yD~~t~~W~~l~~~g~~P~~R~~---h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~ 201 (617)
+++.|+..+-+-+++.. -.|.+.+. +-++.-+|.+|.+.++.+ .|++|++++.+-..+... + +++
T Consensus 452 ~le~~el~~ps~kel~~--~~~~~~~~~I~~l~~SsdG~yiaa~~t~g------~I~v~nl~~~~~~~l~~r---l-n~~ 519 (691)
T KOG2048|consen 452 SLEEFELETPSFKELKS--IQSQAKCPSISRLVVSSDGNYIAAISTRG------QIFVYNLETLESHLLKVR---L-NID 519 (691)
T ss_pred eeEEEEecCcchhhhhc--cccccCCCcceeEEEcCCCCEEEEEeccc------eEEEEEcccceeecchhc---c-Ccc
Confidence 68888888877776642 12222222 222233566788887543 599999999887766543 1 132
Q ss_pred ceEEEE---ECCEEEEEecCCCCCccceEEEEECCC---CcEEEee
Q 007111 202 GCCGVL---CGTKWYIAGGGSRKKRHAETLIFDILK---GEWSVAI 241 (617)
Q Consensus 202 ~ha~v~---~~~~IyI~GG~s~~~~~~~v~~yDl~~---~~W~~l~ 241 (617)
.-+++. ..+.+.|.-- .+.++.||+.. ..|....
T Consensus 520 vTa~~~~~~~~~~lvvats------~nQv~efdi~~~~l~~ws~~n 559 (691)
T KOG2048|consen 520 VTAAAFSPFVRNRLVVATS------NNQVFEFDIEARNLTRWSKNN 559 (691)
T ss_pred eeeeeccccccCcEEEEec------CCeEEEEecchhhhhhhhhcc
Confidence 222222 2455555521 14688888843 3566654
No 256
>PRK02793 phi X174 lysis protein; Provisional
Probab=66.38 E-value=12 Score=30.74 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=15.7
Q ss_pred cchhhHHHHHHHHhhhhcc
Q 007111 589 QLQVEVFHLKQRLQSLENR 607 (617)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~ 607 (617)
.||-++.+|++||.+++.-
T Consensus 40 ~L~~~l~~L~~rl~~~~~~ 58 (72)
T PRK02793 40 KLRDHLRLLTEKLKASQPS 58 (72)
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 4667899999999999853
No 257
>PLN02678 seryl-tRNA synthetase
Probab=66.18 E-value=30 Score=38.62 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhH-HhhhcccccccCCC
Q 007111 512 EMEKKLADSLKEMELLKEKLAGLELAQ-EEANSLSNIVHSDN 552 (617)
Q Consensus 512 ~~~~~~~~~~~~~~~lkek~~~~e~~q-e~~~~~~~~~~~~~ 552 (617)
++.+++..+-+|+..|.+++..+|..- +...+|-|++|.+=
T Consensus 75 ~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~~~~V 116 (448)
T PLN02678 75 ELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLVHDSV 116 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 333333334444444444444443332 45778999999853
No 258
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=65.99 E-value=21 Score=35.02 Aligned_cols=57 Identities=16% Similarity=0.175 Sum_probs=31.0
Q ss_pred CCcchhhhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhhcc
Q 007111 551 DNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLENR 607 (617)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (617)
++-++|..++-|+.-+-+.|.+....++.--.+=+..=+||+++..|++.+..+|-+
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~ 181 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELE 181 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443333333333344456788888888888887743
No 259
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=65.63 E-value=91 Score=30.13 Aligned_cols=51 Identities=18% Similarity=0.198 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 007111 471 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSL 521 (617)
Q Consensus 471 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (617)
++.+++.+......++.+.......++..+.++.+.-.+...+.+.+.+..
T Consensus 100 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 100 LQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444455555555555555555555555555555555555
No 260
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=65.61 E-value=56 Score=37.93 Aligned_cols=103 Identities=18% Similarity=0.177 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhc-hhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccC
Q 007111 472 ESKMAALIRKNG-ILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHS 550 (617)
Q Consensus 472 ~~~~~~~~~~~~-~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~ 550 (617)
+++++..+-+.. ..++-+..++.++.+++++++-.-.-|++.+.+++....++.+.|.++..+..-
T Consensus 121 e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~------------- 187 (716)
T KOG4593|consen 121 EEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSE------------- 187 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 334444444444 666777888888889999988888889999999999988988888887766421
Q ss_pred CCcchhhhHHHHHHHHHHHHHhhhhhccchhhhccccccch
Q 007111 551 DNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQ 591 (617)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (617)
+-.+-+.|+-...+.++|.|+++..++-=+.|+=-.|
T Consensus 188 ----l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~q 224 (716)
T KOG4593|consen 188 ----LQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQ 224 (716)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566778888999999999998887766654333
No 261
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=65.60 E-value=2.1e+02 Score=31.69 Aligned_cols=120 Identities=21% Similarity=0.272 Sum_probs=63.6
Q ss_pred EEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCc-EEEeecCCCCCCCCcc
Q 007111 74 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLT-WLPLHCTGTGPSPRSN 151 (617)
Q Consensus 74 ~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~-W~~l~~~g~~P~~R~~ 151 (617)
.+-.||+.+.. .+. .+|..-.......+ ++-+|+.-+.+.. +|.+||++..+ ...+ .++... +
T Consensus 370 ~vkiwdlks~~--~~a---~Fpght~~vk~i~FsENGY~Lat~add~-----~V~lwDLRKl~n~kt~----~l~~~~-~ 434 (506)
T KOG0289|consen 370 VVKIWDLKSQT--NVA---KFPGHTGPVKAISFSENGYWLATAADDG-----SVKLWDLRKLKNFKTI----QLDEKK-E 434 (506)
T ss_pred eEEEEEcCCcc--ccc---cCCCCCCceeEEEeccCceEEEEEecCC-----eEEEEEehhhccccee----eccccc-c
Confidence 47777877766 333 34443333333333 3455555444432 38899998765 2322 222222 3
Q ss_pred cEEEEEC--CcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECC-EEEEEec
Q 007111 152 HVAALYD--DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGT-KWYIAGG 217 (617)
Q Consensus 152 h~a~~~~--~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~-~IyI~GG 217 (617)
-....++ +. ..++||.+- .||.|+-.+..|+.+...... -.-..++.++. ..|++-|
T Consensus 435 v~s~~fD~SGt-~L~~~g~~l-----~Vy~~~k~~k~W~~~~~~~~~---sg~st~v~Fg~~aq~l~s~ 494 (506)
T KOG0289|consen 435 VNSLSFDQSGT-YLGIAGSDL-----QVYICKKKTKSWTEIKELADH---SGLSTGVRFGEHAQYLAST 494 (506)
T ss_pred ceeEEEcCCCC-eEEeeccee-----EEEEEecccccceeeehhhhc---ccccceeeecccceEEeec
Confidence 3444454 34 455556542 378888889999999875222 12234455543 3455544
No 262
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=65.55 E-value=60 Score=30.98 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhccccc
Q 007111 468 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNI 547 (617)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~ 547 (617)
...++.++..|-.+...|+.++..+.+.+-...+. -+-.+|..+++...+|.+.|++||..+... .
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~-----~t~~el~~~i~~l~~e~~~l~~kL~~l~~~---~------ 139 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSE-----PTNEELREEIEELEEEIEELEEKLEKLRSG---S------ 139 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHhC---C------
Confidence 34555567777776666666665555544444333 366789999999999999999999988731 1
Q ss_pred ccCCCcchhhhHHHHHHHHHHHHHhh
Q 007111 548 VHSDNVRLEHDVAFLKAVLDDTQKEL 573 (617)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (617)
.++. +.|+.-+..-....+|+.
T Consensus 140 ---~~vs-~ee~~~~~~~~~~~~k~w 161 (169)
T PF07106_consen 140 ---KPVS-PEEKEKLEKEYKKWRKEW 161 (169)
T ss_pred ---CCCC-HHHHHHHHHHHHHHHHHH
Confidence 1122 466777776666666654
No 263
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=65.27 E-value=26 Score=41.06 Aligned_cols=64 Identities=17% Similarity=0.251 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhh-----------hhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSS-----------VLKSRQEMEKKLADSLKEMELLKEKLA 532 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~lkek~~ 532 (617)
...+.++.++..+.+.++++++...+.++++++++.. ..+.|+++++++....++.+..+.++.
T Consensus 212 ~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~ 286 (650)
T TIGR03185 212 EALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLR 286 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666665555555442 245566777777666665555555443
No 264
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=65.04 E-value=28 Score=34.67 Aligned_cols=29 Identities=34% Similarity=0.413 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007111 507 LKSRQEMEKKLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~lkek~~~~e 535 (617)
-+.+++++.||.+..+|.|.|.+.+..+|
T Consensus 134 ke~~ee~kekl~E~~~EkeeL~~eleele 162 (290)
T COG4026 134 KEDYEELKEKLEELQKEKEELLKELEELE 162 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888777666655544
No 265
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=64.88 E-value=3.6e+02 Score=33.70 Aligned_cols=212 Identities=12% Similarity=0.031 Sum_probs=111.0
Q ss_pred eEEEEE--CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCC------------CCCcceeEEEEE--CCEEEEE
Q 007111 50 HSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDI------------PVARSGHTVVRA--SSVLILF 113 (617)
Q Consensus 50 hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~------------P~~R~~~s~~~~--~~~IYv~ 113 (617)
+.++.. ++.|||.-..+ ..+.++|+.++.-+.+...|.. ..-...+.++.. ++.+|+.
T Consensus 627 ~GIavd~~gn~LYVaDt~n------~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVa 700 (1057)
T PLN02919 627 QGLAYNAKKNLLYVADTEN------HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIA 700 (1057)
T ss_pred cEEEEeCCCCEEEEEeCCC------ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEE
Confidence 445543 56789875431 3688899888776655432210 001122334443 5788887
Q ss_pred eecCCCCCccCeEEEEECCCCcEEEeecCCC-------CCC---CCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEEC
Q 007111 114 GGEDGKRRKLNDLHMFDLKSLTWLPLHCTGT-------GPS---PRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDF 182 (617)
Q Consensus 114 GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~-------~P~---~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~ 182 (617)
.. ..+.+++||+.+.....+...|. .+. ...-+.+++. ++..|||....+ +.|.+||+
T Consensus 701 d~------~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n-----~~Irv~D~ 769 (1057)
T PLN02919 701 MA------GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES-----SSIRALDL 769 (1057)
T ss_pred EC------CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC-----CeEEEEEC
Confidence 42 23568999988776654421111 000 0111123333 344588876543 56999999
Q ss_pred CCCcEEEeecCCCC--CC--------------CC--cceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecC
Q 007111 183 ETMIWTRIKIRGFH--PS--------------PR--AGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITS 243 (617)
Q Consensus 183 ~t~~W~~~~~~g~~--P~--------------~R--~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~ 243 (617)
.++....+.. +.+ +. .. .-.+++.. ++.+||....+ ..+.+||+.+.....+...
T Consensus 770 ~tg~~~~~~g-g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N-----~rIrviD~~tg~v~tiaG~ 843 (1057)
T PLN02919 770 KTGGSRLLAG-GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN-----HKIKKLDPATKRVTTLAGT 843 (1057)
T ss_pred CCCcEEEEEe-cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC-----CEEEEEECCCCeEEEEecc
Confidence 8766443221 000 00 00 01123332 56799886543 4589999988887766532
Q ss_pred CCC-------CCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 244 PSS-------SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 244 ~~~-------~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
... ..........+.+.. ++.+||.-..+ +.|.++|+.+.+
T Consensus 844 G~~G~~dG~~~~a~l~~P~GIavd~--dG~lyVaDt~N----n~Irvid~~~~~ 891 (1057)
T PLN02919 844 GKAGFKDGKALKAQLSEPAGLALGE--NGRLFVADTNN----SLIRYLDLNKGE 891 (1057)
T ss_pred CCcCCCCCcccccccCCceEEEEeC--CCCEEEEECCC----CEEEEEECCCCc
Confidence 110 000111222334432 34588876543 478899987765
No 266
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=64.50 E-value=22 Score=28.91 Aligned_cols=56 Identities=32% Similarity=0.328 Sum_probs=43.6
Q ss_pred HHhchhhHhHHHHhhcHHHHhhhhhh-----hhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007111 480 RKNGILEGQLAAALVNREAAEKNFSS-----VLKSRQEMEKKLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 480 ~~~~~~~~q~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~lkek~~~~e 535 (617)
.+-..|+.+|.--++.++.|||=+.. ..+++.+.+.+|.++...+++||..|...+
T Consensus 9 ~~l~~L~~~l~~E~~~r~Gaenm~~~~~~~~~~~~~~~~~~~l~es~~ki~~Lr~~L~k~~ 69 (72)
T cd00089 9 SRLERLEKELSIELKVKEGAENLLRLYSDEKKKKLLAEAEQMLRESKQKLELLKMQLEKLK 69 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777778888888885433 246788999999999999999999887654
No 267
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=64.17 E-value=45 Score=35.43 Aligned_cols=43 Identities=12% Similarity=0.242 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHH
Q 007111 557 HDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQ 599 (617)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (617)
.++.-.+.-+++.|.||..-+..+..-..+-=+++-++.++..
T Consensus 218 ~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 218 QEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666676666666666555555555555555444
No 268
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=64.16 E-value=28 Score=36.14 Aligned_cols=53 Identities=25% Similarity=0.342 Sum_probs=31.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH-hHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHh
Q 007111 505 SVLKSRQEMEKKLADSLKEMELLKEKLAGLEL-AQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKE 572 (617)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~-~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (617)
-+++.||+-..+..+++-|.+.|..+=..|.+ |+ +||+||++||-.+.+-+|+
T Consensus 238 AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~---------------~lerEI~ylKqli~e~~~~ 291 (294)
T KOG4571|consen 238 AATRYRQKKRAEKEALLGELEGLEKRNEELKDQAS---------------ELEREIRYLKQLILEVYKK 291 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHh
Confidence 34566666655555555555444333333321 11 3678999999998888774
No 269
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=63.89 E-value=75 Score=32.04 Aligned_cols=57 Identities=32% Similarity=0.389 Sum_probs=42.6
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhccchhhhcccc-c---cch----------hhHHHHHHHHhhhhccCCCCCC
Q 007111 555 LEHDVAFLKAVLDDTQKELHSTRGVLAGERARA-F---QLQ----------VEVFHLKQRLQSLENRAPTPRK 613 (617)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~----------~~~~~~~~~~~~~~~~~~~~~~ 613 (617)
-.+||---...||+|.| -+-|-+|.-||.|= | +|| -||-||.+-++.|-.-+.-|.+
T Consensus 159 a~~dvn~k~~~lEe~ek--~alR~aLiEER~Rfc~Fvs~l~pVl~~e~~ml~E~~hl~~~~~~l~~~t~~p~~ 229 (231)
T cd07643 159 AMQDVNDKYLLLEETEK--KAVRNALIEERGRFCTFVSFLKPVLDEEISMLGEVTHLQTIMEDLASLTADPHK 229 (231)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccc
Confidence 34788888888999877 57899999999993 2 222 2888999888887766655543
No 270
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=63.84 E-value=1.5e+02 Score=29.85 Aligned_cols=156 Identities=16% Similarity=0.158 Sum_probs=76.0
Q ss_pred EEEECCEEEEEcccCCCCCCceEEEEEECC-CCcEEEeeccCCCCCCcceeEEEE--ECCEEEEEeecCCCCCccCeEEE
Q 007111 52 LISWGKKVLLVGGKTDSGSDRVSVWTFDTE-TECWSVVEAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHM 128 (617)
Q Consensus 52 ~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~-t~~W~~~~~~g~~P~~R~~~s~~~--~~~~IYv~GG~~~~~~~~~~v~~ 128 (617)
+..-++++++.. +.........+..|... ..+|....... +.......+.+ -++.||++--.. ... .-.+.
T Consensus 114 i~~~~G~l~~~~-~~~~~~~~~~~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~-~~~--~~~~~ 187 (275)
T PF13088_consen 114 IQLPDGRLIAPY-YHESGGSFSAFVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE-GND--DIYIS 187 (275)
T ss_dssp EEECTTEEEEEE-EEESSCEEEEEEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC-SST--EEEEE
T ss_pred eEecCCCEEEEE-eeccccCcceEEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc-CCC--cEEEE
Confidence 444577888772 21111223345545554 45698887321 22233333333 256888876443 211 23344
Q ss_pred EECC-CCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcce-EEE
Q 007111 129 FDLK-SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGC-CGV 206 (617)
Q Consensus 129 yD~~-t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~h-a~v 206 (617)
+..+ -.+|+..... .+|.+.....++...+..++++.........-.++.-.-...+|.........+...+++ +++
T Consensus 188 ~S~D~G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~ 266 (275)
T PF13088_consen 188 RSTDGGRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLT 266 (275)
T ss_dssp EESSTTSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEE
T ss_pred EECCCCCcCCCceec-ccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeE
Confidence 4444 3469986422 456666555555554444666665322221122333333478899765532222223333 444
Q ss_pred EE-CCEEEE
Q 007111 207 LC-GTKWYI 214 (617)
Q Consensus 207 ~~-~~~IyI 214 (617)
.. +++|||
T Consensus 267 ~~~dg~l~i 275 (275)
T PF13088_consen 267 QLPDGKLYI 275 (275)
T ss_dssp EEETTEEEE
T ss_pred EeCCCcCCC
Confidence 44 678886
No 271
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=63.73 E-value=30 Score=40.45 Aligned_cols=97 Identities=29% Similarity=0.277 Sum_probs=50.4
Q ss_pred HHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh----hhHHhHHhhhcccc---cccC
Q 007111 478 LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLA----GLELAQEEANSLSN---IVHS 550 (617)
Q Consensus 478 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~----~~e~~qe~~~~~~~---~~~~ 550 (617)
+..+.+.||.|+...+...--.++.+-....+.+...++.+++.++.+.|+.++. .+|..|+..+-++- +-+-
T Consensus 522 ~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~ 601 (698)
T KOG0978|consen 522 LELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKF 601 (698)
T ss_pred HHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333333333333333444444455554444444444432 22333333332221 2445
Q ss_pred CCcchhhhHHHHHHHHHHHHHhhh
Q 007111 551 DNVRLEHDVAFLKAVLDDTQKELH 574 (617)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~ 574 (617)
-+.|||.|..-|+--|+.++|+=|
T Consensus 602 k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 602 KRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHhccccc
Confidence 568999999999999999999887
No 272
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=63.72 E-value=3.2e+02 Score=32.78 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=22.9
Q ss_pred eEEEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEee
Q 007111 50 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVE 89 (617)
Q Consensus 50 hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~ 89 (617)
.+-+.+++.||+.... +.++.+|..|.+ |+.-+
T Consensus 188 ~TPlvvgg~lYv~t~~-------~~V~ALDa~TGk~lW~~d~ 222 (764)
T TIGR03074 188 ATPLKVGDTLYLCTPH-------NKVIALDAATGKEKWKFDP 222 (764)
T ss_pred cCCEEECCEEEEECCC-------CeEEEEECCCCcEEEEEcC
Confidence 3445679999998542 358888888765 87654
No 273
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=63.55 E-value=32 Score=37.27 Aligned_cols=35 Identities=29% Similarity=0.502 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhc
Q 007111 509 SRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS 543 (617)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~ 543 (617)
...+++++++.+.++.+.+++.+..+|...++.+.
T Consensus 35 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (378)
T TIGR01554 35 EKEELETDVEKLKEEIKLLEDAIADLEKVTEETKR 69 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 34466777777777777777766666655555544
No 274
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.49 E-value=74 Score=35.95 Aligned_cols=122 Identities=31% Similarity=0.360 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhccccc
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQ-EMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNI 547 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~ 547 (617)
.-.+-+|.-|-..-+.|..||++|...|+-|||.|-.+|.+-| +-|.|.|- -||.+. - +--|+.-.++||
T Consensus 197 EglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~al-kkEL~q-------~-~n~e~~~~~n~l 267 (772)
T KOG0999|consen 197 EGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNAL-KKELSQ-------Y-RNAEDISSLNHL 267 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHH-------h-cchhhhhhhhhh
Confidence 4455667777778889999999999999999999999977754 33444432 122211 1 000111111111
Q ss_pred c--------------------------------------------cCCCc-----------chhhhHHHHHHHHHHHHHh
Q 007111 548 V--------------------------------------------HSDNV-----------RLEHDVAFLKAVLDDTQKE 572 (617)
Q Consensus 548 ~--------------------------------------------~~~~~-----------~~~~~~~~~~~~~~~~~~~ 572 (617)
. .-.|+ -.|++-+.|-|-|.|||+-
T Consensus 268 ~~sldgk~~eDga~pn~d~e~eh~~l~kl~~Dl~tel~~p~sDl~sel~iseiqkLkqqL~smErek~~l~anL~dtqt~ 347 (772)
T KOG0999|consen 268 LFSLDGKFGEDGAEPNNDPEEEHGALKKLASDLFTELQGPVSDLFSELNISEIQKLKQQLMSMEREKAELLANLQDTQTQ 347 (772)
T ss_pred heecccccccccCCCCCChhhhcchhhhccchhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 1 00111 1246678888999999999
Q ss_pred hhhhccchhhhccccccchhhHHHHHH
Q 007111 573 LHSTRGVLAGERARAFQLQVEVFHLKQ 599 (617)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (617)
|.-|+|-|.--|.|---|---|..|.+
T Consensus 348 le~T~~~l~~~~er~~~l~e~v~al~r 374 (772)
T KOG0999|consen 348 LEHTEGDLMEQRERVDRLTEHVQALRR 374 (772)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998777665555444555543
No 275
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=63.20 E-value=2.4 Score=50.16 Aligned_cols=126 Identities=24% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhccccccc
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVH 549 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~ 549 (617)
..+..+..|..++..|...+......+.+.+ .+.....+.+..++++.-..++.|++++-.+|.+.++.--
T Consensus 197 el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~---~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~------ 267 (713)
T PF05622_consen 197 ELEKQISDLQEEKESLQSENEELQERLSQLE---GSSEEPSQHLSVELADLRAQLRRLREELERLEEQRDDLKI------ 267 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhHHHhhhhhhhhhcccCCCC---CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 4455566666666666555555554444444 2234456777788888888888888888777766555422
Q ss_pred CCCcchhhhHHHHHHHHHHHHHhhhhhc------cchhhhccccccchhhHHHHHHHHhhhh
Q 007111 550 SDNVRLEHDVAFLKAVLDDTQKELHSTR------GVLAGERARAFQLQVEVFHLKQRLQSLE 605 (617)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (617)
..-.+|.+|.-|+--.++++++-...| -+|--+..|+=+|+.+|...|++|+.|+
T Consensus 268 -~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~ 328 (713)
T PF05622_consen 268 -ELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLE 328 (713)
T ss_dssp --------------------------------------------------------------
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112233333333333333332222222 1344456678888888888888888775
No 276
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=63.17 E-value=2.4 Score=51.17 Aligned_cols=125 Identities=27% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhH-----------Hhhhccc--
Q 007111 479 IRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ-----------EEANSLS-- 545 (617)
Q Consensus 479 ~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~q-----------e~~~~~~-- 545 (617)
.+....+..|+.++...++.+.....-+......+++++...-.|++.|+..+..++++. ++.|.|+
T Consensus 573 ~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~ 652 (859)
T PF01576_consen 573 QKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQ 652 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444555555555555555555555555556667777777778888888777766554 3444442
Q ss_pred -ccccCCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhccccccchh--------------------------hHHHHH
Q 007111 546 -NIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQV--------------------------EVFHLK 598 (617)
Q Consensus 546 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~ 598 (617)
+.....=-+||.+|+-|.+=|++.+.++.. |.||+|.-+.|+ .|-.|+
T Consensus 653 ~~~l~~~kr~le~~i~~l~~eleE~~~~~~~-----~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq 727 (859)
T PF01576_consen 653 NSSLSEEKRKLEAEIQQLEEELEEEQSEAEA-----AEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQ 727 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233344457999999999999999988753 555555555443 566777
Q ss_pred HHHhhhhccC
Q 007111 599 QRLQSLENRA 608 (617)
Q Consensus 599 ~~~~~~~~~~ 608 (617)
.||.-||+-+
T Consensus 728 ~rl~e~E~~~ 737 (859)
T PF01576_consen 728 ARLEEAEQSA 737 (859)
T ss_dssp ----------
T ss_pred HHHHHHHHhh
Confidence 7777777543
No 277
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=63.06 E-value=2.1e+02 Score=30.26 Aligned_cols=156 Identities=19% Similarity=0.221 Sum_probs=82.8
Q ss_pred CCCCcccceEEEEEC--CEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCC
Q 007111 42 LKIPACRGHSLISWG--KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK 119 (617)
Q Consensus 42 ~~~p~r~~hs~v~~g--~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~ 119 (617)
++.|+--+-+.+.+. +..++++-|++ ++-.||...+.-...- .....--.++..+..=.+.||.++.
T Consensus 8 l~npP~d~IS~v~f~~~~~~LLvssWDg------slrlYdv~~~~l~~~~-----~~~~plL~c~F~d~~~~~~G~~dg~ 76 (323)
T KOG1036|consen 8 LENPPEDGISSVKFSPSSSDLLVSSWDG------SLRLYDVPANSLKLKF-----KHGAPLLDCAFADESTIVTGGLDGQ 76 (323)
T ss_pred cCCCChhceeeEEEcCcCCcEEEEeccC------cEEEEeccchhhhhhe-----ecCCceeeeeccCCceEEEeccCce
Confidence 334444455666554 22334444632 5788888777433221 1111112344556555666776554
Q ss_pred CCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEE-ECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCC
Q 007111 120 RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL-YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPS 198 (617)
Q Consensus 120 ~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~-~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~ 198 (617)
+-+||..+..=..+. .--.+.. ++.. .... .+|.||++.. |-.+|+.... .. +..-.
T Consensus 77 ------vr~~Dln~~~~~~ig---th~~~i~--ci~~~~~~~-~vIsgsWD~~-----ik~wD~R~~~----~~-~~~d~ 134 (323)
T KOG1036|consen 77 ------VRRYDLNTGNEDQIG---THDEGIR--CIEYSYEVG-CVISGSWDKT-----IKFWDPRNKV----VV-GTFDQ 134 (323)
T ss_pred ------EEEEEecCCcceeec---cCCCceE--EEEeeccCC-eEEEcccCcc-----EEEEeccccc----cc-ccccc
Confidence 889999988776662 2222211 1111 2344 7899999854 8888886521 11 11112
Q ss_pred CCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCc
Q 007111 199 PRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 199 ~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
+-.-+++.+ .+.++|+|+.. ..+..||+.+..
T Consensus 135 ~kkVy~~~v-~g~~LvVg~~~-----r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 135 GKKVYCMDV-SGNRLVVGTSD-----RKVLIYDLRNLD 166 (323)
T ss_pred CceEEEEec-cCCEEEEeecC-----ceEEEEEccccc
Confidence 223344444 45555666544 458899987643
No 278
>KOG1664 consensus Vacuolar H+-ATPase V1 sector, subunit E [Energy production and conversion]
Probab=63.02 E-value=33 Score=33.86 Aligned_cols=97 Identities=24% Similarity=0.236 Sum_probs=72.3
Q ss_pred chHHHHHHHHHHHHHHH-------------hchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHH-HHHHHHHHHHH
Q 007111 465 SSIYQFYESKMAALIRK-------------NGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLAD-SLKEMELLKEK 530 (617)
Q Consensus 465 ~~~~~~~~~~~~~~~~~-------------~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lkek 530 (617)
..|-|+|++|.++.-.+ -..|+.+-+-..+-+++|.|+|+-+-+++..-++=|.+ +..-++.|+|+
T Consensus 49 ~kI~~~yekKeKqve~~kkI~~S~~lN~~RlKvL~ar~d~i~~i~~ea~k~Ls~i~~~~~~Y~~lL~~LivQ~Ll~L~Ep 128 (220)
T KOG1664|consen 49 LKIMQYYEKKEKQVELQKKIAKSNLLNQSRLKVLRARDDIIDDILDEAKKRLSKVSKDTDRYKKLLKDLIVQGLLQLLEP 128 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhCCC
Confidence 57789999998775332 23466677777778899999999999998888888884 66677778777
Q ss_pred HhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhhhccc
Q 007111 531 LAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGV 579 (617)
Q Consensus 531 ~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (617)
..=+- -.|.|+..+++++++.-.|+-.-=|+
T Consensus 129 ~~Ivr------------------cre~D~~lVe~~~~~a~~~y~~ka~~ 159 (220)
T KOG1664|consen 129 EVIVR------------------CREKDLKLVEAALPKAIEEYKEKAGV 159 (220)
T ss_pred eeEEe------------------ehhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 65432 25789999999999888777655443
No 279
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=62.90 E-value=1.7e+02 Score=30.85 Aligned_cols=131 Identities=13% Similarity=0.146 Sum_probs=73.6
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceE
Q 007111 125 DLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCC 204 (617)
Q Consensus 125 ~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha 204 (617)
++-.||...+.-... ..-.+|. -.++..+.. =.++||.++. |-+||+.+..=..+.... .+. -+
T Consensus 36 slrlYdv~~~~l~~~-~~~~~pl----L~c~F~d~~-~~~~G~~dg~-----vr~~Dln~~~~~~igth~---~~i--~c 99 (323)
T KOG1036|consen 36 SLRLYDVPANSLKLK-FKHGAPL----LDCAFADES-TIVTGGLDGQ-----VRRYDLNTGNEDQIGTHD---EGI--RC 99 (323)
T ss_pred cEEEEeccchhhhhh-eecCCce----eeeeccCCc-eEEEeccCce-----EEEEEecCCcceeeccCC---Cce--EE
Confidence 477888887732211 1112221 244555655 5778888754 999999998877775531 121 12
Q ss_pred EEE-ECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEE
Q 007111 205 GVL-CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEV 283 (617)
Q Consensus 205 ~v~-~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~v 283 (617)
+.. .....+|.||... .+-++|+.... . ....-.+..-+++-+. +..+|+|+.+ ..|.+
T Consensus 100 i~~~~~~~~vIsgsWD~-----~ik~wD~R~~~----~--~~~~d~~kkVy~~~v~-----g~~LvVg~~~----r~v~i 159 (323)
T KOG1036|consen 100 IEYSYEVGCVISGSWDK-----TIKFWDPRNKV----V--VGTFDQGKKVYCMDVS-----GNRLVVGTSD----RKVLI 159 (323)
T ss_pred EEeeccCCeEEEcccCc-----cEEEEeccccc----c--ccccccCceEEEEecc-----CCEEEEeecC----ceEEE
Confidence 222 2455667787663 36677776511 1 1112223344554443 3466777764 36899
Q ss_pred EECCCCcc
Q 007111 284 LSIEKNES 291 (617)
Q Consensus 284 yd~~~~~W 291 (617)
||+.+..-
T Consensus 160 yDLRn~~~ 167 (323)
T KOG1036|consen 160 YDLRNLDE 167 (323)
T ss_pred EEcccccc
Confidence 99988764
No 280
>PF13256 DUF4047: Domain of unknown function (DUF4047)
Probab=62.72 E-value=44 Score=30.10 Aligned_cols=65 Identities=23% Similarity=0.249 Sum_probs=44.3
Q ss_pred hhcHHHHhhhhhhhhhhHHHHHHHHHH--------HHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHH
Q 007111 493 LVNREAAEKNFSSVLKSRQEMEKKLAD--------SLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKA 564 (617)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (617)
-.++|+|+.....+++-+..|+++++. ...+...-|||++....| |-+=-+.|++
T Consensus 30 ~~L~e~A~qh~~~Il~eye~mk~~~~~~Sie~leq~~~~w~~~rEki~~e~ea-----------------LQ~IY~eie~ 92 (125)
T PF13256_consen 30 DTLKEQAEQHKEQILHEYEGMKKKVKVTSIEELEQAIVEWKQGREKIVAEREA-----------------LQNIYTEIED 92 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHH
Confidence 467899999999999999999999885 333445566776654433 1122344556
Q ss_pred HHHHHHHhhh
Q 007111 565 VLDDTQKELH 574 (617)
Q Consensus 565 ~~~~~~~~~~ 574 (617)
-.-.+|+|||
T Consensus 93 ~ynq~qe~~k 102 (125)
T PF13256_consen 93 YYNQIQEELK 102 (125)
T ss_pred HHHHHHHHhc
Confidence 6666777776
No 281
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=62.63 E-value=1.9e+02 Score=29.72 Aligned_cols=136 Identities=21% Similarity=0.188 Sum_probs=73.3
Q ss_pred EEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEEC-CEEEEEeecCCCCCccCeEEEEE
Q 007111 52 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDLHMFD 130 (617)
Q Consensus 52 ~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~-~~IYv~GG~~~~~~~~~~v~~yD 130 (617)
+.--.|.|++.||. ..+|..|+++++.+..-. -..-+-|+++.-+ +.=++-||.++. +.++|
T Consensus 122 ldP~enSi~~AgGD-------~~~y~~dlE~G~i~r~~r----GHtDYvH~vv~R~~~~qilsG~EDGt------vRvWd 184 (325)
T KOG0649|consen 122 LDPSENSILFAGGD-------GVIYQVDLEDGRIQREYR----GHTDYVHSVVGRNANGQILSGAEDGT------VRVWD 184 (325)
T ss_pred eccCCCcEEEecCC-------eEEEEEEecCCEEEEEEc----CCcceeeeeeecccCcceeecCCCcc------EEEEe
Confidence 33347889999985 258999999998766531 2223445554422 334455666554 67888
Q ss_pred CCCCcEEEe-ecCCCCCCCC--ccc--EEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEE
Q 007111 131 LKSLTWLPL-HCTGTGPSPR--SNH--VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCG 205 (617)
Q Consensus 131 ~~t~~W~~l-~~~g~~P~~R--~~h--~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~ 205 (617)
..+.+-.++ .+......-| -+- .+...+.. ..|.||-. .+-.|++...+.+.+-+. | .| -|-+
T Consensus 185 ~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed-WlvCGgGp------~lslwhLrsse~t~vfpi---p-a~-v~~v 252 (325)
T KOG0649|consen 185 TKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED-WLVCGGGP------KLSLWHLRSSESTCVFPI---P-AR-VHLV 252 (325)
T ss_pred ccccceeEEeccccChhhcCcccCceeEEEeccCc-eEEecCCC------ceeEEeccCCCceEEEec---c-cc-eeEe
Confidence 888765443 2111111112 222 33444555 66776643 255666666666655442 2 22 2334
Q ss_pred EEECCEEEEEe
Q 007111 206 VLCGTKWYIAG 216 (617)
Q Consensus 206 v~~~~~IyI~G 216 (617)
...++.|++.|
T Consensus 253 ~F~~d~vl~~G 263 (325)
T KOG0649|consen 253 DFVDDCVLIGG 263 (325)
T ss_pred eeecceEEEec
Confidence 44466666665
No 282
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=62.62 E-value=33 Score=36.99 Aligned_cols=108 Identities=25% Similarity=0.233 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhh-hhhh---hhhHHHHHHHHHHHHHHHHHHHH----HHhhhHHhHHh
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKN-FSSV---LKSRQEMEKKLADSLKEMELLKE----KLAGLELAQEE 540 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~lke----k~~~~e~~qe~ 540 (617)
.--|.+++...+....|+.|+..+.+..++|+.. +..+ ++-+++|-++-...-+|.+..+- --|.+..|++.
T Consensus 94 ~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~~R~~~L~~~g~vs~~~~~~a~~a~~~A~A~~~~a~~~ 173 (352)
T COG1566 94 EQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRAELAQRGVVSREELDRARAALQAAEAALAAAQAA 173 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3556777888888888999999888998888885 5544 33444444333333334433222 22233333333
Q ss_pred hhcccccccCCCcchhhhHHHHHHHHHHHHHhhhhh
Q 007111 541 ANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHST 576 (617)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (617)
++.--.+.-++-..++-.|+-++|-++...-+|.-|
T Consensus 174 ~~~~~~~l~~~~~~~~~~v~~a~a~~~~A~l~L~~T 209 (352)
T COG1566 174 QKQNLALLESEVSGAQAQVASAEAALDQAKLDLERT 209 (352)
T ss_pred HHHHHHHHhhhhccchhHHHHHHHHHHHHHHHhhCC
Confidence 333223334444555566777777777766666554
No 283
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=62.32 E-value=39 Score=38.03 Aligned_cols=65 Identities=23% Similarity=0.274 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccc-c--ccCCCcchhhhHHHHHHHHHHHHHhh
Q 007111 509 SRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSN-I--VHSDNVRLEHDVAFLKAVLDDTQKEL 573 (617)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (617)
.+|+|..+++++..+.+.|+.+++.++...++...-.. + .-.+-.+|++|+...+...+.+.+-+
T Consensus 311 ~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~ 378 (498)
T TIGR03007 311 VYQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRR 378 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888777766554433322111 1 11233466677776666666665533
No 284
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=62.06 E-value=48 Score=29.02 Aligned_cols=66 Identities=24% Similarity=0.303 Sum_probs=31.1
Q ss_pred chhhHhHHHHhhcHHHHhhhhhhhhh---hHHHHHHHHHHHHHHHHHHHHHHhhhHHh-HHhhhcccccc
Q 007111 483 GILEGQLAAALVNREAAEKNFSSVLK---SRQEMEKKLADSLKEMELLKEKLAGLELA-QEEANSLSNIV 548 (617)
Q Consensus 483 ~~~~~q~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~lkek~~~~e~~-qe~~~~~~~~~ 548 (617)
-.|..+++...+.+-+..|......+ .++++..+...+-+++..|.+++..+|.. ++....|-|||
T Consensus 39 r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~iPNip 108 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLLSIPNIP 108 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS----
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 33444445555555555554444433 45566666665555666666655554432 23334455554
No 285
>PRK03918 chromosome segregation protein; Provisional
Probab=61.91 E-value=81 Score=38.15 Aligned_cols=56 Identities=25% Similarity=0.315 Sum_probs=36.0
Q ss_pred HHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhccc
Q 007111 490 AAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLS 545 (617)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~ 545 (617)
.+....+++.++.++.+.+...+++.++.....+.+.+++.+..++.++++.+.|.
T Consensus 189 ~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~~~~l~ 244 (880)
T PRK03918 189 ENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELE 244 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555666666666777777777766666667666766777766666553
No 286
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=61.89 E-value=54 Score=31.57 Aligned_cols=55 Identities=16% Similarity=0.146 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHH
Q 007111 465 SSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLAD 519 (617)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (617)
-++...+..|+..+..++..+..+|.+.......+++.+..+-..+..+.+....
T Consensus 76 v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~ 130 (177)
T PF13870_consen 76 VQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKK 130 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555788889999999999999999999999999998888876666666665553
No 287
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=61.75 E-value=47 Score=27.08 Aligned_cols=31 Identities=29% Similarity=0.440 Sum_probs=15.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007111 505 SVLKSRQEMEKKLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e 535 (617)
.+.+-|.....+|.++-.+...||+++..+.
T Consensus 30 ~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~ 60 (69)
T PF14197_consen 30 RLRRERDSAERQLGDAYEENNKLKEENEALR 60 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555443
No 288
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=61.59 E-value=1e+02 Score=37.46 Aligned_cols=125 Identities=26% Similarity=0.321 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCchH----HHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhh------------------------
Q 007111 454 DNDKSGALSGPSSI----YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSS------------------------ 505 (617)
Q Consensus 454 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~------------------------ 505 (617)
..+..+.|++..+| .+..+..+|++-.++-.|++||..-...+-+.+..|.-
T Consensus 154 s~s~~~~~~sp~~~~~~~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~ 233 (1195)
T KOG4643|consen 154 SRSGKELYKSPYDIVVKKNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADR 233 (1195)
T ss_pred cccCCCCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q ss_pred ---------------------------hhhhH-HHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhh
Q 007111 506 ---------------------------VLKSR-QEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEH 557 (617)
Q Consensus 506 ---------------------------~~~~~-~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~ 557 (617)
..|+| ++++..=+..+.|.|+|||.|.+++ -.+|-+.||.
T Consensus 234 yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lr------------arse~~tles 301 (1195)
T KOG4643|consen 234 YRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLR------------ARSEGATLES 301 (1195)
T ss_pred hhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH------------hccccCChHH
Q ss_pred hHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHH
Q 007111 558 DVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHL 597 (617)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (617)
++--||+-++|.+.|.. ++|..-=+||+|...|
T Consensus 302 eiiqlkqkl~dm~~erd-------tdr~kteeL~eEnstL 334 (1195)
T KOG4643|consen 302 EIIQLKQKLDDMRSERD-------TDRHKTEELHEENSTL 334 (1195)
T ss_pred HHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHH
No 289
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=61.41 E-value=38 Score=31.22 Aligned_cols=80 Identities=23% Similarity=0.291 Sum_probs=53.2
Q ss_pred HHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhH---HhhhcccccccCCC-
Q 007111 477 ALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ---EEANSLSNIVHSDN- 552 (617)
Q Consensus 477 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~q---e~~~~~~~~~~~~~- 552 (617)
.++...++++-.+..+....+.=++.....-..+++++..+..+-++++.||..|..+..-. +|.+.|...|..-.
T Consensus 50 ~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~eyd~La~~I~~~p~ 129 (139)
T PF05615_consen 50 RLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNKEEYDALAKKINSQPT 129 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34445555555555555555555555555566778888888888889999999988765433 67777777776665
Q ss_pred cchh
Q 007111 553 VRLE 556 (617)
Q Consensus 553 ~~~~ 556 (617)
-|-|
T Consensus 130 sR~e 133 (139)
T PF05615_consen 130 SREE 133 (139)
T ss_pred CHHH
Confidence 4433
No 290
>PRK01156 chromosome segregation protein; Provisional
Probab=61.21 E-value=76 Score=38.58 Aligned_cols=25 Identities=8% Similarity=0.167 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhHHh
Q 007111 516 KLADSLKEMELLKEKLAGLELAQEE 540 (617)
Q Consensus 516 ~~~~~~~~~~~lkek~~~~e~~qe~ 540 (617)
++..+.++++.|+++++.++...++
T Consensus 644 ~i~~~~~~i~~l~~~i~~l~~~~~~ 668 (895)
T PRK01156 644 LIEKLRGKIDNYKKQIAEIDSIIPD 668 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3334444444455555555444333
No 291
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=61.10 E-value=32 Score=42.62 Aligned_cols=111 Identities=15% Similarity=0.185 Sum_probs=62.6
Q ss_pred hhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHH
Q 007111 485 LEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKA 564 (617)
Q Consensus 485 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (617)
+-+.|.+++..++++++. -+.-+++++.+.+.-++.+.++++++.+. ++....+.|+. .-.||..+.-..+
T Consensus 46 ~~~~l~~tl~~l~~~~~~----~~~~~~~~~~i~~ap~~~~~~~~~l~~~~--~~~~~~~~~~s---~~~Leq~l~~~~~ 116 (1109)
T PRK10929 46 IVEALQSALNWLEERKGS----LERAKQYQQVIDNFPKLSAELRQQLNNER--DEPRSVPPNMS---TDALEQEILQVSS 116 (1109)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHhhh--cccccccccCC---HHHHHHHHHHHHH
Confidence 334455666666666655 23445677778888888888888888632 22211122222 2456666666666
Q ss_pred HHHHHHHhhhhhccch----hhhccccccchhhHHHHHHHHhhhhccC
Q 007111 565 VLDDTQKELHSTRGVL----AGERARAFQLQVEVFHLKQRLQSLENRA 608 (617)
Q Consensus 565 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (617)
-|.|.|++|..--.-+ ..=++.. |-. ...++|||.++++-
T Consensus 117 ~L~~~q~~l~~~~~~~~~~~~~l~~~p---q~~-~~~~~~l~~i~~~L 160 (1109)
T PRK10929 117 QLLEKSRQAQQEQDRAREISDSLSQLP---QQQ-TEARRQLNEIERRL 160 (1109)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhch---hhH-HHHHHHHHHHHHHH
Confidence 6666666655432222 2222222 222 77888888888763
No 292
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=61.09 E-value=1e+02 Score=37.75 Aligned_cols=69 Identities=22% Similarity=0.308 Sum_probs=36.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhh----------------hcccccccCCCcchhhhHHHHHH-HH
Q 007111 504 SSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEA----------------NSLSNIVHSDNVRLEHDVAFLKA-VL 566 (617)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~----------------~~~~~~~~~~~~~~~~~~~~~~~-~~ 566 (617)
..+.....++++.+++..++.+.+++.+..++...... =-+|+..|.+.- +.++..+.- =+
T Consensus 406 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~CPvCg~~l~~~~--~~~~~~~~~~el 483 (908)
T COG0419 406 EEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEH--EKELLELYELEL 483 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcHH--HHHHHHHHHHHH
Confidence 33444455555556666666666666666665555443 236775555444 344444443 44
Q ss_pred HHHHHhhh
Q 007111 567 DDTQKELH 574 (617)
Q Consensus 567 ~~~~~~~~ 574 (617)
+..+++++
T Consensus 484 ~~l~~~i~ 491 (908)
T COG0419 484 EELEEELS 491 (908)
T ss_pred HHHHHHHH
Confidence 55556665
No 293
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=61.08 E-value=32 Score=38.43 Aligned_cols=20 Identities=10% Similarity=0.159 Sum_probs=8.3
Q ss_pred hhhHHHHHHHHHHHHHhhhh
Q 007111 556 EHDVAFLKAVLDDTQKELHS 575 (617)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~ 575 (617)
+.+++-|++-+.+.+.++..
T Consensus 242 ~~~i~~l~~~i~~~~~~~~~ 261 (457)
T TIGR01000 242 QQQIDQLQKSIASYQVQKAG 261 (457)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444333
No 294
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=60.97 E-value=78 Score=32.26 Aligned_cols=29 Identities=24% Similarity=0.294 Sum_probs=18.2
Q ss_pred HHHHHHhchhhHhHHHHhhcHHHHhhhhh
Q 007111 476 AALIRKNGILEGQLAAALVNREAAEKNFS 504 (617)
Q Consensus 476 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~~ 504 (617)
.-+-.|....++.|++|-..+++|++.+.
T Consensus 32 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~ 60 (246)
T TIGR03321 32 DAMDAREKKIAGELADADTKKREAEQERR 60 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666777777777777766544
No 295
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=60.92 E-value=54 Score=39.14 Aligned_cols=132 Identities=19% Similarity=0.277 Sum_probs=83.6
Q ss_pred HHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh----hhHHhHHhhhcccccccC
Q 007111 475 MAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLA----GLELAQEEANSLSNIVHS 550 (617)
Q Consensus 475 ~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~----~~e~~qe~~~~~~~~~~~ 550 (617)
+...=.+++.|-+-+++....+|.++..+.-..++.+.++.-++-..-|++.||+++- .+...|....||...++.
T Consensus 331 l~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~e 410 (775)
T PF10174_consen 331 LRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLRE 410 (775)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556666666666666666666666666666666666666666666555543 333556666667666766
Q ss_pred CCcchhhhHHHHH------------HHHHHHHHhhhhhccchhhhccccc--------cchhhHHHHHHHHhhhhc
Q 007111 551 DNVRLEHDVAFLK------------AVLDDTQKELHSTRGVLAGERARAF--------QLQVEVFHLKQRLQSLEN 606 (617)
Q Consensus 551 ~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 606 (617)
..-+|+.+..-|+ .-|+++..|..-.++-|--.|.|+= .+|-++..|+..+.+|+.
T Consensus 411 kd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~ 486 (775)
T PF10174_consen 411 KDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQK 486 (775)
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666666666665 7778888887777777666665554 234567777777777764
No 296
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=60.82 E-value=1.1e+02 Score=27.90 Aligned_cols=71 Identities=14% Similarity=0.251 Sum_probs=46.5
Q ss_pred CCchHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHH---HHHHHHHHHHHHHHHHhh
Q 007111 463 GPSSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEK---KLADSLKEMELLKEKLAG 533 (617)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~lkek~~~ 533 (617)
++.++...+.+.+..+=-+..+|..+++...+.|++|...+...++.-++++. ++....++++.|..|...
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t 86 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQT 86 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666677666777788888888888888888888777766655543 333344455555555443
No 297
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=60.73 E-value=2.1e+02 Score=29.48 Aligned_cols=112 Identities=13% Similarity=0.190 Sum_probs=65.2
Q ss_pred CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCc
Q 007111 107 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI 186 (617)
Q Consensus 107 ~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~ 186 (617)
.+.|++.||- ..+|..|+++.+.++.- .| ..-|-|+.+.-+..-=++.|+-++. +-++|.+|.+
T Consensus 126 enSi~~AgGD-------~~~y~~dlE~G~i~r~~-rG---HtDYvH~vv~R~~~~qilsG~EDGt-----vRvWd~kt~k 189 (325)
T KOG0649|consen 126 ENSILFAGGD-------GVIYQVDLEDGRIQREY-RG---HTDYVHSVVGRNANGQILSGAEDGT-----VRVWDTKTQK 189 (325)
T ss_pred CCcEEEecCC-------eEEEEEEecCCEEEEEE-cC---CcceeeeeeecccCcceeecCCCcc-----EEEEeccccc
Confidence 4688888853 34899999999988762 22 2234455544332224567777654 7789998887
Q ss_pred EEEeecCCCC-----CCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEe
Q 007111 187 WTRIKIRGFH-----PSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 240 (617)
Q Consensus 187 W~~~~~~g~~-----P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l 240 (617)
..++...-+. |.--..-.+...+..+.++||... +-.+++...+-+.+
T Consensus 190 ~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~------lslwhLrsse~t~v 242 (325)
T KOG0649|consen 190 HVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPK------LSLWHLRSSESTCV 242 (325)
T ss_pred eeEEeccccChhhcCcccCceeEEEeccCceEEecCCCc------eeEEeccCCCceEE
Confidence 7765331111 111122244555778889988542 33555555444443
No 298
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=60.73 E-value=2.7e+02 Score=30.94 Aligned_cols=107 Identities=10% Similarity=0.079 Sum_probs=60.8
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCccc
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 152 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 152 (617)
.++|++|..+..-..+. ..+..-...+....|.+|+..-.+.+ ...+++||+....=+.+... ...+.+
T Consensus 262 ~~iy~~dl~~~~~~~Lt---~~~gi~~~Ps~spdG~~ivf~Sdr~G----~p~I~~~~~~g~~~~riT~~----~~~~~~ 330 (425)
T COG0823 262 PDIYLMDLDGKNLPRLT---NGFGINTSPSWSPDGSKIVFTSDRGG----RPQIYLYDLEGSQVTRLTFS----GGGNSN 330 (425)
T ss_pred ccEEEEcCCCCcceecc---cCCccccCccCCCCCCEEEEEeCCCC----CcceEEECCCCCceeEeecc----CCCCcC
Confidence 47999999988733333 11211112233333445555533333 24899999998887777422 122223
Q ss_pred EEEEECCcEEEEEccCCCCCCCCeEEEEECCCCc-EEEeecC
Q 007111 153 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI-WTRIKIR 193 (617)
Q Consensus 153 ~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~-W~~~~~~ 193 (617)
....-++++|.+.+ +.++. -++..+|+.++. |+.+...
T Consensus 331 p~~SpdG~~i~~~~-~~~g~--~~i~~~~~~~~~~~~~lt~~ 369 (425)
T COG0823 331 PVWSPDGDKIVFES-SSGGQ--WDIDKNDLASGGKIRILTST 369 (425)
T ss_pred ccCCCCCCEEEEEe-ccCCc--eeeEEeccCCCCcEEEcccc
Confidence 44444666455554 33222 679999997777 8877653
No 299
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=60.71 E-value=95 Score=36.15 Aligned_cols=131 Identities=28% Similarity=0.290 Sum_probs=76.4
Q ss_pred HHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH----hhhH--HhHH--hhhccc
Q 007111 474 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKL----AGLE--LAQE--EANSLS 545 (617)
Q Consensus 474 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~----~~~e--~~qe--~~~~~~ 545 (617)
++.-.+++.+.|+-++.+.-+.+.+.+..+.-.=+-+.-+..|+++-.++.+.|.+-= +.+| ++|. +.|+--
T Consensus 462 ~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~r 541 (716)
T KOG4593|consen 462 EITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRLRAQLERRLLQGDYEENITR 541 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence 3444555555566666655555555555433222222222345666666666655443 1111 2222 357788
Q ss_pred ccccCCCcchhhhHHHHHHHHHHHHHhhhhhccchh-hhcc--------------ccccchhhHHHHHHHHhhhhcc
Q 007111 546 NIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLA-GERA--------------RAFQLQVEVFHLKQRLQSLENR 607 (617)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 607 (617)
++.|++|+.++-.- ..|+-++.+|+|+.-+|+.|- .|+- =+| =-||+.||+.+-|||.|
T Consensus 542 Vl~~~~npt~~~~~-~~k~~~e~LqaE~~~lk~~l~~le~~~~~~~d~~i~~~s~~~~--~~ev~qlk~ev~s~ekr 615 (716)
T KOG4593|consen 542 VLHMSTNPTSKARQ-IKKNRLEELQAELERLKERLTALEGDKMQFRDGEIAVHSLLAF--SKEVAQLKKEVESAEKR 615 (716)
T ss_pred eeeecCCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHhhhhcc--hHHHHHHHHHHHHHHHH
Confidence 88999999976443 357889999999998888442 2221 111 24788888888888865
No 300
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=60.56 E-value=2.3e+02 Score=29.98 Aligned_cols=100 Identities=20% Similarity=0.299 Sum_probs=58.2
Q ss_pred ccCeEEEEECCCCc----EEEeecCCCCCCCCcccEEE---E---ECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEee
Q 007111 122 KLNDLHMFDLKSLT----WLPLHCTGTGPSPRSNHVAA---L---YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIK 191 (617)
Q Consensus 122 ~~~~v~~yD~~t~~----W~~l~~~g~~P~~R~~h~a~---~---~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~ 191 (617)
..+.++.||...++ |++- +-.++...+=+ . ++++ |++.-+ ++. ..=.+|..|..++.-..+.
T Consensus 76 KYSHVH~yd~e~~~VrLLWkes-----ih~~~~WaGEVSdIlYdP~~D~-LLlAR~-DGh-~nLGvy~ldr~~g~~~~L~ 147 (339)
T PF09910_consen 76 KYSHVHEYDTENDSVRLLWKES-----IHDKTKWAGEVSDILYDPYEDR-LLLARA-DGH-ANLGVYSLDRRTGKAEKLS 147 (339)
T ss_pred ccceEEEEEcCCCeEEEEEecc-----cCCccccccchhheeeCCCcCE-EEEEec-CCc-ceeeeEEEcccCCceeecc
Confidence 46779999998876 6642 22233222222 1 2455 666532 221 1224899999999888887
Q ss_pred cCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcE
Q 007111 192 IRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEW 237 (617)
Q Consensus 192 ~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W 237 (617)
.. |.+. .+...+..+|-+ .+-......+.+||+.+++|
T Consensus 148 ~~---ps~K---G~~~~D~a~F~i--~~~~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 148 SN---PSLK---GTLVHDYACFGI--NNFHKGVSGIHCLDLISGKW 185 (339)
T ss_pred CC---CCcC---ceEeeeeEEEec--cccccCCceEEEEEccCCeE
Confidence 65 4442 223334344422 22234457899999999999
No 301
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=60.44 E-value=14 Score=40.26 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=12.1
Q ss_pred hhHHHHHHHHhhhhccCCC
Q 007111 592 VEVFHLKQRLQSLENRAPT 610 (617)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~ 610 (617)
-.+-.|-+||.-||..-++
T Consensus 209 a~~a~LE~RL~~LE~~lG~ 227 (388)
T PF04912_consen 209 ARAADLEKRLARLESALGI 227 (388)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 4566667777777765553
No 302
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=60.36 E-value=64 Score=35.27 Aligned_cols=100 Identities=18% Similarity=0.278 Sum_probs=64.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHH-----------HHHHHhhhHHhHHhhhcccccccCCCcc------hhhhHHHHHH
Q 007111 502 NFSSVLKSRQEMEKKLADSLKEMEL-----------LKEKLAGLELAQEEANSLSNIVHSDNVR------LEHDVAFLKA 564 (617)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------lkek~~~~e~~qe~~~~~~~~~~~~~~~------~~~~~~~~~~ 564 (617)
++....+-+++||-.|..+++|+.. +++|.+.+.+||--..+=.+=|+-++.| |=.||..|+.
T Consensus 252 Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~ 331 (384)
T PF03148_consen 252 RIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRE 331 (384)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHH
Confidence 3333444555666555555554433 5566666777776666655555555544 4478999999
Q ss_pred HHHHHHHhhhhhccchhhhccccccchhhHHHHHHHH
Q 007111 565 VLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRL 601 (617)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (617)
.++.++..|+-+...|..=..-..+|+-++..-...|
T Consensus 332 ~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~~sL 368 (384)
T PF03148_consen 332 SIEALQEKLDEAEASLQKLERTRLRLEEDIAVKNNSL 368 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888877665555566666665544444
No 303
>PRK04406 hypothetical protein; Provisional
Probab=60.19 E-value=18 Score=30.03 Aligned_cols=34 Identities=12% Similarity=0.235 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhhc
Q 007111 559 VAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLEN 606 (617)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (617)
|.-|+.|+-+-|+++. .|+-++.+|++||.+++.
T Consensus 27 Ie~LN~~v~~Qq~~I~--------------~L~~ql~~L~~rl~~~~~ 60 (75)
T PRK04406 27 IEELNDALSQQQLLIT--------------KMQDQMKYVVGKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhhcc
Confidence 4445566666666663 466788899999999984
No 304
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=60.17 E-value=1.5e+02 Score=35.34 Aligned_cols=54 Identities=13% Similarity=0.222 Sum_probs=27.3
Q ss_pred HhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007111 481 KNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 534 (617)
Q Consensus 481 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~ 534 (617)
+-..|..|.+.-+..+.+++..+..+-.+.+.|.+|+.++...+|.|.+++..+
T Consensus 566 rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 566 RVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555544444444555555555555555555555543
No 305
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=60.16 E-value=74 Score=28.91 Aligned_cols=62 Identities=23% Similarity=0.268 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHH----HHHHHHHhhhH
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEM----ELLKEKLAGLE 535 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~lkek~~~~e 535 (617)
.+..+++.+-+....|...+-..+...|+.+... +-..+++..+++..... ++|-||...+|
T Consensus 34 ~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~----~~~~~L~~el~~l~~ry~t~LellGEK~E~ve 99 (120)
T PF12325_consen 34 SLQEELARLEAERDELREEIVKLMEENEELRALK----KEVEELEQELEELQQRYQTLLELLGEKSEEVE 99 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 3444444455555555555555555555554432 33334444444443332 45666655554
No 306
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=60.09 E-value=48 Score=32.51 Aligned_cols=67 Identities=25% Similarity=0.265 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 007111 465 SSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLA 532 (617)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~ 532 (617)
++..+....++..|..+.+.++..++......+.+.+. ......|+++-.+|....++.+.|+++++
T Consensus 61 s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~-r~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 61 SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKG-REESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555544444444444221 12234555555555555555555555554
No 307
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=59.99 E-value=2.7e+02 Score=30.55 Aligned_cols=102 Identities=14% Similarity=0.022 Sum_probs=49.1
Q ss_pred EEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEE
Q 007111 110 LILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR 189 (617)
Q Consensus 110 IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~ 189 (617)
+++|.=.++...+-..+|..|.......++.. .++....+|--...++..|+..+...+ ..-.-|..||+.+..=+.
T Consensus 202 li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~--~~~~e~~gHEfw~~DG~~i~y~~~~~~-~~~~~i~~~d~~t~~~~~ 278 (386)
T PF14583_consen 202 LIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR--RMEGESVGHEFWVPDGSTIWYDSYTPG-GQDFWIAGYDPDTGERRR 278 (386)
T ss_dssp EEEEEE-S-TTTSS-SEEEEETTS---EESS-----TTEEEEEEEE-TTSS-EEEEEEETT-T--EEEEEE-TTT--EEE
T ss_pred EEEEeccCCcceeceEEEEEEcCCCcceeeec--CCCCcccccccccCCCCEEEEEeecCC-CCceEEEeeCCCCCCceE
Confidence 44443333333233467888877666666642 334455566666667764433333222 223348889999876544
Q ss_pred eecCCCCCCCCcceEEEEECCEEEEEecCC
Q 007111 190 IKIRGFHPSPRAGCCGVLCGTKWYIAGGGS 219 (617)
Q Consensus 190 ~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s 219 (617)
+..+ |.+.|-.+..++++++--|..
T Consensus 279 ~~~~-----p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 279 LMEM-----PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEE------SEEEEEE-TTSSEEEEEE--
T ss_pred EEeC-----CceeeeEEcCCCCEEEecCCC
Confidence 4443 457787787788888876653
No 308
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=59.84 E-value=3.4 Score=32.26 Aligned_cols=31 Identities=42% Similarity=0.536 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHH
Q 007111 521 LKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAV 565 (617)
Q Consensus 521 ~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (617)
-+|+|-||++++.++.- |-.||.|..+||..
T Consensus 13 rEEVevLK~~I~eL~~~--------------n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 13 REEVEVLKEQIAELEER--------------NSQLEEENNLLKQN 43 (59)
T ss_dssp TTSHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhc
Confidence 35888999999988733 55788888888864
No 309
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=59.83 E-value=47 Score=40.43 Aligned_cols=100 Identities=23% Similarity=0.248 Sum_probs=57.1
Q ss_pred HHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHh-HHhhhcccccccCCCc
Q 007111 475 MAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELA-QEEANSLSNIVHSDNV 553 (617)
Q Consensus 475 ~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~-qe~~~~~~~~~~~~~~ 553 (617)
|..+..+-+.++.||........--..-...+-+..++++++|.+..+|++-++|++..+... .++---++++--++..
T Consensus 450 ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~ 529 (1041)
T KOG0243|consen 450 IEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEK 529 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444443333332222223556677888999999999999999999888766 3333334444444443
Q ss_pred chhhhHHHHHHHHHHHHHhhhh
Q 007111 554 RLEHDVAFLKAVLDDTQKELHS 575 (617)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~ 575 (617)
.-..++ -|..-++..|+++++
T Consensus 530 l~~~a~-~l~~~~~~s~~d~s~ 550 (1041)
T KOG0243|consen 530 LVDRAT-KLRRSLEESQDDLSS 550 (1041)
T ss_pred HHHHHH-HHHHHHHHHHHHHHH
Confidence 333322 245556777777764
No 310
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=59.70 E-value=81 Score=33.01 Aligned_cols=108 Identities=14% Similarity=0.162 Sum_probs=59.4
Q ss_pred chHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhh------------hHHHHHHHHHHHHHHHHHHHHHHh
Q 007111 465 SSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLK------------SRQEMEKKLADSLKEMELLKEKLA 532 (617)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~lkek~~ 532 (617)
.++.+.+..+++.+-.+-..|..|++.+.+..+++...+.-=.. ..++.+.++.+...+.+.|+.++.
T Consensus 127 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~ 206 (301)
T PF14362_consen 127 AQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQID 206 (301)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34445566666666666666666666666666666554433211 245556666666666666666655
Q ss_pred hhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhhhccchh
Q 007111 533 GLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLA 581 (617)
Q Consensus 533 ~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (617)
....+-+.... -+++..-+.-.+...+.|..-.+..|.|+
T Consensus 207 ~~~~~l~~~~~---------~~~~~l~~~~~~~~a~~~~~~~~~~G~l~ 246 (301)
T PF14362_consen 207 AAIAALDAQIA---------ARKARLDEARQAKVAEFQAIISANDGFLA 246 (301)
T ss_pred HHHHHHHhhHH---------HHHHHHHHHHHHHHHHHhHhhccCCCHHH
Confidence 44332222111 33344444555566666665566667664
No 311
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=59.07 E-value=2.5e+02 Score=30.00 Aligned_cols=185 Identities=13% Similarity=0.091 Sum_probs=87.2
Q ss_pred eEEEEECC--CCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEeec
Q 007111 15 DVQVLNFD--RFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEA 90 (617)
Q Consensus 15 ~v~~yd~~--t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~ 90 (617)
.+++||.. +..|..-.. . . .+..-..+..++.+|+.- ....++.+|..+.+ |..-..
T Consensus 122 ~~y~ld~~~G~~~W~~~~~----------~-~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~ 182 (370)
T COG1520 122 KLYALDASTGTLVWSRNVG----------G-S-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETP 182 (370)
T ss_pred eEEEEECCCCcEEEEEecC----------C-C-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecC
Confidence 69999995 445876664 1 1 222233444455666553 12358888888654 875442
Q ss_pred cCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEee--cCCCCC---CCCcccEEEEECCcEEE
Q 007111 91 KGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLH--CTGTGP---SPRSNHVAALYDDKNLL 163 (617)
Q Consensus 91 ~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~--~~g~~P---~~R~~h~a~~~~~~~Ly 163 (617)
.+ . ..+.....+..++.+|+-. .. ....++.+|+.+.+ |..-. ..+... .+......+.+++. +|
T Consensus 183 ~~-~-~~~~~~~~~~~~~~vy~~~-~~----~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-~~ 254 (370)
T COG1520 183 AP-L-SLSIYGSPAIASGTVYVGS-DG----YDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGG-VY 254 (370)
T ss_pred Cc-c-ccccccCceeecceEEEec-CC----CcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCc-EE
Confidence 11 1 2222222224455555542 21 12268999997764 87421 111110 12222233333333 32
Q ss_pred EEccCCCCCCCCeEEEEECCC--CcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEEC
Q 007111 164 IFGGSSKSKTLNDLYSLDFET--MIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDI 232 (617)
Q Consensus 164 V~GG~~~~~~~n~v~~yD~~t--~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl 232 (617)
.... ...++++|..+ ..|..-........+........-++++|+............+++++.
T Consensus 255 ~~~~------~g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~~~~~~~~~~~~ 319 (370)
T COG1520 255 AGSY------GGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAGADGKVYIGFTDNDGRGSGSLYALAD 319 (370)
T ss_pred EEec------CCeEEEEEcCCCceEEEEecccEeccCCeeEEeecCCCccEEEEEeccccccccceEEEec
Confidence 2211 22377777754 458766541111122222222223677777754332223345667764
No 312
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=58.75 E-value=1.4e+02 Score=31.30 Aligned_cols=113 Identities=17% Similarity=0.163 Sum_probs=63.8
Q ss_pred ECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCC-cceeEEEEE--CCEEEEEeecCCCCCccCeEEEEEC
Q 007111 55 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVA-RSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDL 131 (617)
Q Consensus 55 ~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~-R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~ 131 (617)
-++.||+.-=. -+-+-+.|+.+..=+.++ .|.. ..+.--+.. -+++++. +. -...+++|||
T Consensus 198 pdGsvwyasla------gnaiaridp~~~~aev~p----~P~~~~~gsRriwsdpig~~wit---tw---g~g~l~rfdP 261 (353)
T COG4257 198 PDGSVWYASLA------GNAIARIDPFAGHAEVVP----QPNALKAGSRRIWSDPIGRAWIT---TW---GTGSLHRFDP 261 (353)
T ss_pred CCCcEEEEecc------ccceEEcccccCCcceec----CCCcccccccccccCccCcEEEe---cc---CCceeeEeCc
Confidence 36677766211 123666777777555554 2333 112111222 2567765 11 2457999999
Q ss_pred CCCcEEEeecCCCCCCCCcccEEEEECCc-EEEEEccCCCCCCCCeEEEEECCCCcEEEeec
Q 007111 132 KSLTWLPLHCTGTGPSPRSNHVAALYDDK-NLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 192 (617)
Q Consensus 132 ~t~~W~~l~~~g~~P~~R~~h~a~~~~~~-~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~ 192 (617)
....|.+.+ +|......-...+++. ++++. -.+ .+.|.+||+++.+++.+..
T Consensus 262 s~~sW~eyp----LPgs~arpys~rVD~~grVW~s-ea~----agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 262 SVTSWIEYP----LPGSKARPYSMRVDRHGRVWLS-EAD----AGAIGRFDPETARFTVLPI 314 (353)
T ss_pred ccccceeee----CCCCCCCcceeeeccCCcEEee-ccc----cCceeecCcccceEEEecC
Confidence 999999884 4443333333444433 24332 111 3569999999999998754
No 313
>PRK02119 hypothetical protein; Provisional
Probab=58.39 E-value=20 Score=29.56 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhhcc
Q 007111 559 VAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLENR 607 (617)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (617)
|.-|+.|+-+-||++. .|+.++.+|.+||..++.-
T Consensus 25 ie~LN~~v~~Qq~~id--------------~L~~ql~~L~~rl~~~~~~ 59 (73)
T PRK02119 25 LEELNQALIEQQFVID--------------KMQVQLRYMANKLKDMQPS 59 (73)
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhhccc
Confidence 3445556666666653 3557788999999998843
No 314
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=58.19 E-value=1.5e+02 Score=27.11 Aligned_cols=46 Identities=26% Similarity=0.428 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhh
Q 007111 557 HDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLE 605 (617)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (617)
.+++-|++-.+..+.+|..-+.-...+|. .|+-|+-.+++|+..|.
T Consensus 73 ~~~~~l~~~~~~a~~~l~~~e~sw~~qk~---~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 73 QEINELKAEAESAKAELEESEASWEEQKE---QLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 34444555555555555444444444333 24556666666665543
No 315
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=58.01 E-value=2.7e+02 Score=30.87 Aligned_cols=106 Identities=15% Similarity=0.101 Sum_probs=60.3
Q ss_pred cCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc
Q 007111 123 LNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG 202 (617)
Q Consensus 123 ~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ 202 (617)
..++|.||..+.+=.++. -..+...+....-+|++||..-.+.+. ..|++||++...=+++...+ +...
T Consensus 261 ~~~iy~~dl~~~~~~~Lt----~~~gi~~~Ps~spdG~~ivf~Sdr~G~---p~I~~~~~~g~~~~riT~~~----~~~~ 329 (425)
T COG0823 261 SPDIYLMDLDGKNLPRLT----NGFGINTSPSWSPDGSKIVFTSDRGGR---PQIYLYDLEGSQVTRLTFSG----GGNS 329 (425)
T ss_pred CccEEEEcCCCCcceecc----cCCccccCccCCCCCCEEEEEeCCCCC---cceEEECCCCCceeEeeccC----CCCc
Confidence 467999999988744342 122333344445566645554333332 38999999988777776531 1111
Q ss_pred eEE-EEECCEEEEEecCCCCCccceEEEEECCCCc-EEEeec
Q 007111 203 CCG-VLCGTKWYIAGGGSRKKRHAETLIFDILKGE-WSVAIT 242 (617)
Q Consensus 203 ha~-v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~-W~~l~~ 242 (617)
+-. ...+++|.+.+ ..... ..+..+|+.++. |+.+..
T Consensus 330 ~p~~SpdG~~i~~~~-~~~g~--~~i~~~~~~~~~~~~~lt~ 368 (425)
T COG0823 330 NPVWSPDGDKIVFES-SSGGQ--WDIDKNDLASGGKIRILTS 368 (425)
T ss_pred CccCCCCCCEEEEEe-ccCCc--eeeEEeccCCCCcEEEccc
Confidence 222 22244455544 32221 567888887776 888764
No 316
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=57.91 E-value=24 Score=29.03 Aligned_cols=47 Identities=26% Similarity=0.431 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHH
Q 007111 510 RQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLK 563 (617)
Q Consensus 510 ~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~ 563 (617)
-.+||.|++.++.-+++|+.+++.++ |+.+.|. .+|--|+++..-|+
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLk---e~n~~L~----~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELK---EKNNELK----EENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHH----HHHHHHHHHHHHHH
Confidence 35566666666666666666555554 2222222 34445555555555
No 317
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=57.91 E-value=57 Score=36.36 Aligned_cols=66 Identities=18% Similarity=0.272 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHhhh
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKS-RQEMEKKLADSLKEMELLKEKLAGL 534 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lkek~~~~ 534 (617)
...+++++.+++.|..|..+-+...+-......+.+.++.+ +++++++......|+..|+..|..+
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999998888887666666666677777655 5666666666655665666555555
No 318
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=57.87 E-value=69 Score=34.44 Aligned_cols=111 Identities=15% Similarity=0.182 Sum_probs=45.5
Q ss_pred hhhHhHHHHhhcHHHHhhhhhhhhhhHHH---HHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHH
Q 007111 484 ILEGQLAAALVNREAAEKNFSSVLKSRQE---MEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVA 560 (617)
Q Consensus 484 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~ 560 (617)
-++.||..+....++||.+|..- +++.. .+........-+..|+.+++.+|..-. .+.-.--.++. +|.
T Consensus 174 fl~~ql~~~~~~l~~ae~~l~~f-r~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~---~l~~~~~~~~P----~v~ 245 (362)
T TIGR01010 174 FAENEVKEAEQRLNATKAELLKY-QIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLA---QLRSITPEQNP----QVP 245 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhCCCCCC----chH
Confidence 45555666666666665554322 11110 122222233444555555555542211 12222222222 345
Q ss_pred HHHHHHHHHHHhhhhhccchhh-hccccccchhhHHHHHHHHh
Q 007111 561 FLKAVLDDTQKELHSTRGVLAG-ERARAFQLQVEVFHLKQRLQ 602 (617)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 602 (617)
-|++-++.+++.|..-+.-+.+ .+...-+.+++...|+..++
T Consensus 246 ~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~ 288 (362)
T TIGR01010 246 SLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNE 288 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Confidence 5555555555555443332222 22222333444444444443
No 319
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=57.78 E-value=52 Score=31.69 Aligned_cols=86 Identities=19% Similarity=0.193 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhh--hhhHHHHH----H--HHH----------------------
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV--LKSRQEME----K--KLA---------------------- 518 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~~~----~--~~~---------------------- 518 (617)
..+..+.+.+.---.-|++|+.+..+-...+|++|.+| |+.+-.-+ - .|+
T Consensus 40 ~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~~~s~~t~f~lsd~vy~ka~V~~~~kV~LWLGAn 119 (187)
T KOG3313|consen 40 KKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQTLIAKKDEGESFETTFLLSDGVYTKASVPPTDKVYLWLGAN 119 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhCcccCcceeEEEEecccceeeeecCCcCeEEEEecce
Confidence 34444555555555667788888888888999998776 33221111 0 011
Q ss_pred -----HHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHH
Q 007111 519 -----DSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDD 568 (617)
Q Consensus 519 -----~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (617)
++.+..++||.+++.++.-++. +|||+.||+.-.--
T Consensus 120 VMlEY~leEAeaLLkknl~sa~k~l~~--------------~~~DldfLrdQvTT 160 (187)
T KOG3313|consen 120 VMLEYDLEEAEALLKKNLTSAVKSLDV--------------LEEDLDFLRDQVTT 160 (187)
T ss_pred eEEEecHHHHHHHHHhhHHHHHHHHHH--------------HHHHHHHHHhhcee
Confidence 2445557799999999877654 79999999875433
No 320
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=57.77 E-value=61 Score=26.43 Aligned_cols=59 Identities=20% Similarity=0.295 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELL 527 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 527 (617)
.....++..+.|+++..+.-+......++.|+..|..+....++|..++...-+|.+.+
T Consensus 8 ~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 8 ATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566778888899998888899999999999999999888888888888777774443
No 321
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=57.51 E-value=1e+02 Score=37.04 Aligned_cols=8 Identities=50% Similarity=0.534 Sum_probs=3.7
Q ss_pred HHhHHhhh
Q 007111 535 ELAQEEAN 542 (617)
Q Consensus 535 e~~qe~~~ 542 (617)
+.|++|++
T Consensus 569 ~~~~~~a~ 576 (782)
T PRK00409 569 EEAEKEAQ 576 (782)
T ss_pred HHHHHHHH
Confidence 44445544
No 322
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=57.28 E-value=47 Score=31.93 Aligned_cols=59 Identities=20% Similarity=0.178 Sum_probs=26.3
Q ss_pred HHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007111 477 ALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 477 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e 535 (617)
+|-.+|..|..+++.=-..+...-+.....+.--.+..+|+..+..+.+.++..++..+
T Consensus 46 qLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~ 104 (177)
T PF13870_consen 46 QLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDRE 104 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555544444433333333333333334444444455555555544444444443
No 323
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=57.05 E-value=76 Score=34.41 Aligned_cols=135 Identities=16% Similarity=0.244 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHhhhHHhHHhhhccccc
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLK-EMELLKEKLAGLELAQEEANSLSNI 547 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lkek~~~~e~~qe~~~~~~~~ 547 (617)
.++..-+.+...-...++..+.++-..++....+++..++-.+.-|+.|..-+. -+..+++..+.+..+||+.+.+|.-
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~ 295 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEG 295 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 466777777777888888888999999999999999988888888888887665 4456788888888888888888766
Q ss_pred ccCCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhhccC
Q 007111 548 VHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLENRA 608 (617)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (617)
|- .+.++++.+..-|+.++.|+... |---+-=+===+..=-|..||+-+.-|+=|-
T Consensus 296 V~----~~t~~L~~IseeLe~vK~emeer-g~~mtD~sPlv~IKqAl~kLk~EI~qMdvrI 351 (359)
T PF10498_consen 296 VS----ERTRELAEISEELEQVKQEMEER-GSSMTDGSPLVKIKQALTKLKQEIKQMDVRI 351 (359)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 53 45677777777777777776542 1111111111111123566777777776553
No 324
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=56.87 E-value=38 Score=39.70 Aligned_cols=71 Identities=24% Similarity=0.240 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhchhhHhHHHHhhcHHHH--hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhh
Q 007111 471 YESKMAALIRKNGILEGQLAAALVNREAA--EKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEA 541 (617)
Q Consensus 471 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~ 541 (617)
...++.+++.+...++.+|+.+-..+..+ +..++.+.+..++++++++.+.++.+.+++++..++...++.
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 461 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEAL 461 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777776666554 235555566667777777776666666666666554444433
No 325
>PRK00295 hypothetical protein; Provisional
Probab=56.81 E-value=23 Score=28.74 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhhc
Q 007111 559 VAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLEN 606 (617)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (617)
|.-|+.|+-.-||++. .|+-.+..|.+||.+++.
T Consensus 21 ie~Ln~~v~~Qq~~I~--------------~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00295 21 IQALNDVLVEQQRVIE--------------RLQLQMAALIKRQEEMVG 54 (68)
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhc
Confidence 3345555556666553 355778899999999974
No 326
>PRK04325 hypothetical protein; Provisional
Probab=56.81 E-value=22 Score=29.38 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=14.9
Q ss_pred cchhhHHHHHHHHhhhhcc
Q 007111 589 QLQVEVFHLKQRLQSLENR 607 (617)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~ 607 (617)
.|+..+.+|..||.+++.-
T Consensus 41 ~L~~ql~~L~~rl~~~~~~ 59 (74)
T PRK04325 41 LLQAQLRLLYQQMRDANPD 59 (74)
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 3667788999999998843
No 327
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=56.68 E-value=71 Score=38.16 Aligned_cols=100 Identities=22% Similarity=0.257 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHh--hhcccc
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEE--ANSLSN 546 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~--~~~~~~ 546 (617)
..|..+++.+..+...|+..|.+...+++.+-...+++.-+..+-+..+....=+.|..++|+..++..=+. +|.=
T Consensus 468 e~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e-- 545 (775)
T PF10174_consen 468 ETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAE-- 545 (775)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHh--
Confidence 477778888888888888888888777777777766666665555555555555666677777766533222 1110
Q ss_pred cccCCCcchhhhHHHHHHHHHHHHH
Q 007111 547 IVHSDNVRLEHDVAFLKAVLDDTQK 571 (617)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (617)
.-.....||.+|+-.+.....-|.
T Consensus 546 -~~~r~~~Le~ev~~~~ee~~kaq~ 569 (775)
T PF10174_consen 546 -LRDRIQQLEQEVTRYREESEKAQA 569 (775)
T ss_pred -hcchHHHHHHHHHHHHHHHHHHHH
Confidence 122444566666666555555444
No 328
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=56.58 E-value=71 Score=29.83 Aligned_cols=45 Identities=22% Similarity=0.152 Sum_probs=26.7
Q ss_pred HHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHH
Q 007111 475 MAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLAD 519 (617)
Q Consensus 475 ~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (617)
...+-.|.....++|++|-..+++|++.+...-+-..+++.+...
T Consensus 30 ~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~ 74 (156)
T PRK05759 30 MKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAE 74 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555667777788888888888877655543333333333333
No 329
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=56.50 E-value=66 Score=32.64 Aligned_cols=71 Identities=15% Similarity=0.208 Sum_probs=58.4
Q ss_pred chHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007111 465 SSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e 535 (617)
+..+..|.+++..|+.+......+|-.+-+-+...|.-...+-..|.+.+.+......|+.-||+.+-.+.
T Consensus 31 e~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 31 EKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568999999999999999999998888888888887777777777777777777778888888877664
No 330
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=56.40 E-value=89 Score=27.63 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhh
Q 007111 468 YQFYESKMAALIRKNGILEGQLAAALVNREAAEK 501 (617)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~ 501 (617)
||.+..++..+......|+.|+..+...+++.++
T Consensus 12 ~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~ 45 (110)
T TIGR02338 12 LQQLQQQLQAVATQKQQVEAQLKEAEKALEELER 45 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4677788888888888898888888777777665
No 331
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=56.29 E-value=28 Score=35.58 Aligned_cols=41 Identities=22% Similarity=0.230 Sum_probs=20.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhh
Q 007111 502 NFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEAN 542 (617)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~ 542 (617)
.+.-+....+.|+.-.....+|.+.|++++..+..+++++.
T Consensus 83 e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak 123 (246)
T PF00769_consen 83 ELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAK 123 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333455555666666666666555443
No 332
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.10 E-value=20 Score=32.42 Aligned_cols=31 Identities=39% Similarity=0.492 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 007111 507 LKSRQEMEKKLADSLKEMELLKEKLAGLELA 537 (617)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~ 537 (617)
+++++.+++.|++.++...+|.|.|++||+.
T Consensus 9 ~~~ye~~kaEL~elikkrqe~eetl~nLe~q 39 (135)
T KOG3856|consen 9 LKSYEDTKAELAELIKKRQELEETLANLERQ 39 (135)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888888888888888753
No 333
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=56.09 E-value=61 Score=32.26 Aligned_cols=66 Identities=23% Similarity=0.230 Sum_probs=47.4
Q ss_pred HHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhc
Q 007111 477 ALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS 543 (617)
Q Consensus 477 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~ 543 (617)
.++.+...++.+++......++++.....+-.+..+|+.|+.+...+.+.|+-+...+ .||+..|.
T Consensus 88 ~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a-~a~~~~~~ 153 (221)
T PF04012_consen 88 EALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAA-KAQKKVNE 153 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4566666677777777777777777777777778888888888887777777776655 56666555
No 334
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=55.80 E-value=68 Score=33.83 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhHH
Q 007111 512 EMEKKLADSLKEMELLKEKLAGLELAQE 539 (617)
Q Consensus 512 ~~~~~~~~~~~~~~~lkek~~~~e~~qe 539 (617)
.+++|+.....|.|.|.--|+....+|.
T Consensus 245 dlQ~r~k~~~~EnEeL~q~L~~ske~Q~ 272 (306)
T PF04849_consen 245 DLQQRCKQLAAENEELQQHLQASKESQR 272 (306)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555544443
No 335
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=55.66 E-value=1.2e+02 Score=31.14 Aligned_cols=91 Identities=19% Similarity=0.237 Sum_probs=56.2
Q ss_pred HhchhhHhHHHHhhcHHHHhhhhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHhhh----HHhHHhh----hcccccccCC
Q 007111 481 KNGILEGQLAAALVNREAAEKNFSSVLKS-RQEMEKKLADSLKEMELLKEKLAGL----ELAQEEA----NSLSNIVHSD 551 (617)
Q Consensus 481 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lkek~~~~----e~~qe~~----~~~~~~~~~~ 551 (617)
.-++.|+-|+++|...-.+..+.+..+.. -..++..+++.++|+..+=+-+-++ +.+|.+. .+|.+ ..+|
T Consensus 100 lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k-~~~d 178 (243)
T cd07666 100 LWSASEEELADSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALAN-KKAD 178 (243)
T ss_pred HHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhh
Confidence 33344888888888888888877777766 5667778888888886532222111 2222111 11111 2466
Q ss_pred CcchhhhHHHHHHHHHHHHHh
Q 007111 552 NVRLEHDVAFLKAVLDDTQKE 572 (617)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~ 572 (617)
.-+++.||.-+.+=.++..+.
T Consensus 179 r~~~~~ev~~~e~kve~a~~~ 199 (243)
T cd07666 179 RDLLKEEIEKLEDKVECANNA 199 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 667888888888877777554
No 336
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=55.64 E-value=63 Score=33.82 Aligned_cols=72 Identities=24% Similarity=0.309 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhh-----------hHH----HHHHHHHHHHHHHHHHHHHHhh
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLK-----------SRQ----EMEKKLADSLKEMELLKEKLAG 533 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~-----------~~~----~~~~~~~~~~~~~~~lkek~~~ 533 (617)
...+.+++++-.+|..|.+||++|..--+.-||-+..|=. ..+ -+|.+-.+...|.-.|||++=-
T Consensus 217 es~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~q 296 (305)
T PF14915_consen 217 ESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQ 296 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3667889999999999999999998876666664443311 111 2556666667777778888877
Q ss_pred hHHhHHh
Q 007111 534 LELAQEE 540 (617)
Q Consensus 534 ~e~~qe~ 540 (617)
.|..+.|
T Consensus 297 yEkEKaE 303 (305)
T PF14915_consen 297 YEKEKAE 303 (305)
T ss_pred HHHHhhc
Confidence 7655443
No 337
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=55.58 E-value=31 Score=38.41 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007111 510 RQEMEKKLADSLKEMELLKEKL 531 (617)
Q Consensus 510 ~~~~~~~~~~~~~~~~~lkek~ 531 (617)
++++|.||.+...|.+.||+++
T Consensus 99 ~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 99 RGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555554
No 338
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=55.52 E-value=52 Score=26.97 Aligned_cols=52 Identities=25% Similarity=0.279 Sum_probs=37.2
Q ss_pred hhhHhHHHHhhcHHHH-hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007111 484 ILEGQLAAALVNREAA-EKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 484 ~~~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e 535 (617)
.||.||--|+.++++. +|....-=.++..+...++..-++-..|++++..+.
T Consensus 3 eLE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls 55 (70)
T PF04899_consen 3 ELEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLS 55 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4677777777776654 555555566777788888877777778888877765
No 339
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=55.48 E-value=62 Score=31.73 Aligned_cols=70 Identities=26% Similarity=0.299 Sum_probs=34.1
Q ss_pred chHH-HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007111 465 SSIY-QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 465 ~~~~-~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e 535 (617)
+.+| -+-....+.+-++...|..+++......++.+..+...-..|.+-+.+. ..+++.+.|+++++.++
T Consensus 53 sn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~-~~l~~l~~l~~~~~~l~ 123 (188)
T PF03962_consen 53 SNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEERE-ELLEELEELKKELKELK 123 (188)
T ss_pred eeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHHHHH
Confidence 4555 2333333444445555555555555555555555555544454443332 24455555555555443
No 340
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=55.27 E-value=2.6e+02 Score=29.55 Aligned_cols=140 Identities=20% Similarity=0.214 Sum_probs=73.6
Q ss_pred CCEEEEEeecCCCCCccCeEEEEE---CCCCcEEEeecCCCCCCCCcccEEEEE------CCcEEEEEccCCCCCCCCeE
Q 007111 107 SSVLILFGGEDGKRRKLNDLHMFD---LKSLTWLPLHCTGTGPSPRSNHVAALY------DDKNLLIFGGSSKSKTLNDL 177 (617)
Q Consensus 107 ~~~IYv~GG~~~~~~~~~~v~~yD---~~t~~W~~l~~~g~~P~~R~~h~a~~~------~~~~LyV~GG~~~~~~~n~v 177 (617)
+|..++-||.+-. ++.++ -..|.|..- +|..++. ++. .++.-|.+. .+
T Consensus 58 ~gs~~aSgG~Dr~------I~LWnv~gdceN~~~lk-----------gHsgAVM~l~~~~d~s-~i~S~gtDk-----~v 114 (338)
T KOG0265|consen 58 DGSCFASGGSDRA------IVLWNVYGDCENFWVLK-----------GHSGAVMELHGMRDGS-HILSCGTDK-----TV 114 (338)
T ss_pred CCCeEeecCCcce------EEEEeccccccceeeec-----------cccceeEeeeeccCCC-EEEEecCCc-----eE
Confidence 5677888877543 33333 345566621 4555543 344 555556653 48
Q ss_pred EEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEE
Q 007111 178 YSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTL 256 (617)
Q Consensus 178 ~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~ 256 (617)
..||.++++-..--.. ..++--++... -+-..|..|..+. .+-+||+.+..-.. .+...+-..+
T Consensus 115 ~~wD~~tG~~~rk~k~----h~~~vNs~~p~rrg~~lv~SgsdD~----t~kl~D~R~k~~~~-------t~~~kyqltA 179 (338)
T KOG0265|consen 115 RGWDAETGKRIRKHKG----HTSFVNSLDPSRRGPQLVCSGSDDG----TLKLWDIRKKEAIK-------TFENKYQLTA 179 (338)
T ss_pred EEEecccceeeehhcc----ccceeeecCccccCCeEEEecCCCc----eEEEEeecccchhh-------ccccceeEEE
Confidence 9999999876643221 11111111111 2333444454332 46788876543211 1223445556
Q ss_pred EEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 257 VLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 257 v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
+.+.+.+. =++.||-+ ++|.++|+..+.
T Consensus 180 v~f~d~s~--qv~sggId----n~ikvWd~r~~d 207 (338)
T KOG0265|consen 180 VGFKDTSD--QVISGGID----NDIKVWDLRKND 207 (338)
T ss_pred EEeccccc--ceeecccc----CceeeeccccCc
Confidence 66654432 35678865 478888887766
No 341
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=55.18 E-value=67 Score=32.95 Aligned_cols=71 Identities=11% Similarity=0.150 Sum_probs=35.2
Q ss_pred HHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHH--HHHHHHHhhhHHhHHhhhcccc
Q 007111 476 AALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEM--ELLKEKLAGLELAQEEANSLSN 546 (617)
Q Consensus 476 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~lkek~~~~e~~qe~~~~~~~ 546 (617)
.-+-.|.....+.|++|-..+++|++.+...-+-.++++++-+.++.++ +.-+++-.-++.|++|+..+-.
T Consensus 32 ~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~ 104 (250)
T PRK14474 32 QVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARD 104 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666666666666655444333334444433333322 1123333345556666655443
No 342
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=55.01 E-value=90 Score=35.05 Aligned_cols=31 Identities=16% Similarity=0.242 Sum_probs=18.3
Q ss_pred HHHHHHHHHhchhhHhHHHHhhcHHHHhhhh
Q 007111 473 SKMAALIRKNGILEGQLAAALVNREAAEKNF 503 (617)
Q Consensus 473 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~ 503 (617)
.+++++-++...++.++.++.+...+.++.+
T Consensus 204 ~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l 234 (498)
T TIGR03007 204 SEISEAQEELEAARLELNEAIAQRDALKRQL 234 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555566666666666666666555543
No 343
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=54.82 E-value=4e+02 Score=31.03 Aligned_cols=124 Identities=16% Similarity=0.114 Sum_probs=68.0
Q ss_pred CCCCCCCcccEEEEE--CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCC--CCCCcceEEEEECCEEEEEecC
Q 007111 143 GTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFH--PSPRAGCCGVLCGTKWYIAGGG 218 (617)
Q Consensus 143 g~~P~~R~~h~a~~~--~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~--P~~R~~ha~v~~~~~IyI~GG~ 218 (617)
..+|..+...+...+ ++..+++.- ....+++.++.++.+...+.....- -.+.+..+....|+.|.+++++
T Consensus 422 ~~~~~~~~~a~~i~ftid~~k~~~~s-----~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~ 496 (691)
T KOG2048|consen 422 DDVPLALLDASAISFTIDKNKLFLVS-----KNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR 496 (691)
T ss_pred ccchhhhccceeeEEEecCceEEEEe-----cccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEecc
Confidence 467777765555543 444355543 2234578888877777665542110 1122222222347778787754
Q ss_pred CCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 219 SRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 219 s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
..+++||+.+.+-..+.. ..+....++.+.+...+.|+|.-- -+.|+.||++.
T Consensus 497 ------g~I~v~nl~~~~~~~l~~------rln~~vTa~~~~~~~~~~lvvats-----~nQv~efdi~~ 549 (691)
T KOG2048|consen 497 ------GQIFVYNLETLESHLLKV------RLNIDVTAAAFSPFVRNRLVVATS-----NNQVFEFDIEA 549 (691)
T ss_pred ------ceEEEEEcccceeecchh------ccCcceeeeeccccccCcEEEEec-----CCeEEEEecch
Confidence 348999999887666541 112333444444344455655432 35789999854
No 344
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=54.80 E-value=70 Score=32.56 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=13.8
Q ss_pred HHhhhhhccchhhhccccccch
Q 007111 570 QKELHSTRGVLAGERARAFQLQ 591 (617)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~ 591 (617)
..||++.++.|+.|+.=-++-+
T Consensus 203 ~~Ei~~lk~~l~~e~~~R~~~D 224 (247)
T PF06705_consen 203 LEEIAALKNALALESQEREQSD 224 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4567777777777765555443
No 345
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=54.60 E-value=95 Score=31.42 Aligned_cols=109 Identities=20% Similarity=0.275 Sum_probs=59.0
Q ss_pred HHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhh------------hHHHHHHHHHHHHHHHHHHHHHHh--------
Q 007111 473 SKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLK------------SRQEMEKKLADSLKEMELLKEKLA-------- 532 (617)
Q Consensus 473 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~lkek~~-------- 532 (617)
.+++....+...+..++++|-....++.+.|...-+ +..+||.+|....-++..+.+-++
T Consensus 31 ~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~ 110 (240)
T PF12795_consen 31 DEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIE 110 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666655555555444322 355666666654444433333332
Q ss_pred -------------hhHHhHHhhhc-c--------cccccCCCcchhhhHHHHHHHHHHHHHhhhh--hccchh
Q 007111 533 -------------GLELAQEEANS-L--------SNIVHSDNVRLEHDVAFLKAVLDDTQKELHS--TRGVLA 581 (617)
Q Consensus 533 -------------~~e~~qe~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 581 (617)
.+-...++.++ | +.+..+....|+.+++.|++-++..+.||-| .|--|+
T Consensus 111 ~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~ 183 (240)
T PF12795_consen 111 IQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELL 183 (240)
T ss_pred HHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHH
Confidence 22222233333 2 3333444456778888899888888888865 344444
No 346
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=54.49 E-value=36 Score=36.58 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhchhhHh-------HHHHhhcHHHHhh
Q 007111 469 QFYESKMAALIRKNGILEGQ-------LAAALVNREAAEK 501 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q-------~~~~~~~~~~~~~ 501 (617)
+....+|...-|+|+.|+.| |.+++..+|.|+|
T Consensus 288 r~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~K 327 (442)
T PF06637_consen 288 RSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGK 327 (442)
T ss_pred HHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555666666555 4444555555554
No 347
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=54.35 E-value=2.2e+02 Score=32.06 Aligned_cols=89 Identities=16% Similarity=0.242 Sum_probs=48.8
Q ss_pred eEEEEECCCC----cEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCC
Q 007111 125 DLHMFDLKSL----TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPR 200 (617)
Q Consensus 125 ~v~~yD~~t~----~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R 200 (617)
.|..||.... .|.+.+ ..|. .+-+.+..+.. |++.=|++. .|+.||.....-+..-.. ..|.
T Consensus 188 ~VtlwDv~g~sp~~~~~~~H---sAP~--~gicfspsne~-l~vsVG~Dk-----ki~~yD~~s~~s~~~l~y---~~Pl 253 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAH---SAPC--RGICFSPSNEA-LLVSVGYDK-----KINIYDIRSQASTDRLTY---SHPL 253 (673)
T ss_pred eEEEEeccCCCcccchhhhc---cCCc--CcceecCCccc-eEEEecccc-----eEEEeecccccccceeee---cCCc
Confidence 3666776543 477664 3333 33344445555 777778874 499999976554433221 1122
Q ss_pred cceEEEEE-CCEEEEEecCCCCCccceEEEEECCC
Q 007111 201 AGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILK 234 (617)
Q Consensus 201 ~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~ 234 (617)
.+++.- +|.++++|-.. .+++.||+..
T Consensus 254 --stvaf~~~G~~L~aG~s~-----G~~i~YD~R~ 281 (673)
T KOG4378|consen 254 --STVAFSECGTYLCAGNSK-----GELIAYDMRS 281 (673)
T ss_pred --ceeeecCCceEEEeecCC-----ceEEEEeccc
Confidence 233333 44555555433 3588898864
No 348
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=54.31 E-value=90 Score=36.38 Aligned_cols=103 Identities=32% Similarity=0.380 Sum_probs=56.2
Q ss_pred hhhHhHHHHhhcHHHHhhhhhhh----hhhHHHHHHHHHHHHHHHHH-HHHHHhhhHHhHHhhhcccccccCCCcchhhh
Q 007111 484 ILEGQLAAALVNREAAEKNFSSV----LKSRQEMEKKLADSLKEMEL-LKEKLAGLELAQEEANSLSNIVHSDNVRLEHD 558 (617)
Q Consensus 484 ~~~~q~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~ 558 (617)
.++.||.+|..+......+-..+ ++.++.-++-|.....|+|- |.|+|+.+|.- -...|=||
T Consensus 539 ~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~E~L~~~E~r------------LNeARREH- 605 (739)
T PF07111_consen 539 ELEEQLEAARKSLQESTEEAAELRRELTQQQEVYERALQEKVSEVESRLREQLSEMEKR------------LNEARREH- 605 (739)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHH-
Confidence 34445555544444443332221 22222333444445556655 77777777732 33345565
Q ss_pred HHHHHHHHHHHHHhhhhhccchhhhccc-cccc-----hhhHHHHHHHHhhhh
Q 007111 559 VAFLKAVLDDTQKELHSTRGVLAGERAR-AFQL-----QVEVFHLKQRLQSLE 605 (617)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~ 605 (617)
-|||..=-|-|=..+|.- ||.. .-.| .-|..+|++|||-+|
T Consensus 606 ---tKaVVsLRQ~qrqa~reK---er~~E~~~lq~e~~~~e~~rl~~rlqele 652 (739)
T PF07111_consen 606 ---TKAVVSLRQIQRQAAREK---ERNQELRRLQEEARKEEGQRLTQRLQELE 652 (739)
T ss_pred ---HHHHHHHHHHHHHHHHhh---chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488887777777777764 3321 1112 257788899988877
No 349
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=54.08 E-value=72 Score=34.44 Aligned_cols=57 Identities=30% Similarity=0.316 Sum_probs=40.8
Q ss_pred HHHHhchhhHhHHHHhhcHHHHh-hhhhhhhh-hHHHHHHHHH--------HHHHHHHHHHHHHhhhHHhHH
Q 007111 478 LIRKNGILEGQLAAALVNREAAE-KNFSSVLK-SRQEMEKKLA--------DSLKEMELLKEKLAGLELAQE 539 (617)
Q Consensus 478 ~~~~~~~~~~q~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~--------~~~~~~~~lkek~~~~e~~qe 539 (617)
--=|.+.||.||.+++.+- |+| -| || .---||.|+| |+.+-+|-++-+|..+|++|-
T Consensus 304 ERyR~erLEEqLNdlteLq-QnEi~n----LKqElasmeervaYQsyERaRdIqEalEscqtrisKlEl~qq 370 (455)
T KOG3850|consen 304 ERYRYERLEEQLNDLTELQ-QNEIAN----LKQELASMEERVAYQSYERARDIQEALESCQTRISKLELQQQ 370 (455)
T ss_pred HHHHHHHHHHHHhHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346789999999987643 333 22 33 3345677776 677788889999999999996
No 350
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=54.05 E-value=4.2 Score=48.08 Aligned_cols=50 Identities=24% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007111 480 RKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEK 530 (617)
Q Consensus 480 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek 530 (617)
++...|..+||..-..-+.|+|--+.|-+.|++|+. +++.-+.++.|+|+
T Consensus 291 ~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed-~~~lk~qvk~Lee~ 340 (713)
T PF05622_consen 291 REARALRDELDELREKADRADKLENEVEKYKKKLED-LEDLKRQVKELEED 340 (713)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 334444455555444444455544444444444433 33444455555553
No 351
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=53.86 E-value=72 Score=31.44 Aligned_cols=18 Identities=39% Similarity=0.357 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhchhh
Q 007111 469 QFYESKMAALIRKNGILE 486 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~ 486 (617)
.+|++.+|-=+|+.-..|
T Consensus 167 tlyeSsvAfGmRKALqae 184 (259)
T KOG4001|consen 167 TLYESSVAFGMRKALQAE 184 (259)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 478888888888755443
No 352
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=53.85 E-value=1.1e+02 Score=27.77 Aligned_cols=33 Identities=27% Similarity=0.249 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhh
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEK 501 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~ 501 (617)
|-....++.++.....+|.||..+-.-+++.|+
T Consensus 16 QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~ 48 (119)
T COG1382 16 QQLQQQLQKVILQKQQLEAQLKEIEKALEELEK 48 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455667777888888888888888777777776
No 353
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=53.53 E-value=81 Score=31.44 Aligned_cols=42 Identities=24% Similarity=0.418 Sum_probs=27.9
Q ss_pred chHHHHHHHHHHHHHHHh----chhhHhHHHHhhcHHHHhhhhhhh
Q 007111 465 SSIYQFYESKMAALIRKN----GILEGQLAAALVNREAAEKNFSSV 506 (617)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~----~~~~~q~~~~~~~~~~~~~~~~~~ 506 (617)
..|..-|+.-|+++|... ...+.++..++..+++|-.+|.++
T Consensus 43 ~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~ 88 (207)
T PF05010_consen 43 RKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSL 88 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHH
Confidence 567788888888887654 334455666666676666555554
No 354
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.34 E-value=83 Score=33.51 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHHH-hchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcc
Q 007111 466 SIYQFYESKMAALIRK-NGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSL 544 (617)
Q Consensus 466 ~~~~~~~~~~~~~~~~-~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~ 544 (617)
.+.+.++.|+-...++ -+.+....++.-+-.|+.-+....+-..+|.||..+..+.+..+.|+-|++. |||++.||
T Consensus 210 svisa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e---al~~~~n~ 286 (365)
T KOG2391|consen 210 SVISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE---ALEKAENL 286 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHhhhccC
Confidence 5566666666543332 2223223333333444444444455556777777777788888889999876 99999996
Q ss_pred cccccCCCcchhh
Q 007111 545 SNIVHSDNVRLEH 557 (617)
Q Consensus 545 ~~~~~~~~~~~~~ 557 (617)
-++ .-|+.+.+.
T Consensus 287 ~~~-~~D~~~~~~ 298 (365)
T KOG2391|consen 287 EAL-DIDEAIECT 298 (365)
T ss_pred cCC-Cchhhhhcc
Confidence 654 445555543
No 355
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=53.31 E-value=70 Score=37.06 Aligned_cols=65 Identities=18% Similarity=0.196 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 534 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~ 534 (617)
...+.++..|-..-..|+.++.......+.....+.-+.+..++++...+...+++. +|+|+..+
T Consensus 324 ~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~-l~~k~~~l 388 (594)
T PF05667_consen 324 EEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK-LKKKTVEL 388 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 334444444433333333333333333333333333333333344444433333333 44444443
No 356
>PRK00846 hypothetical protein; Provisional
Probab=53.09 E-value=29 Score=28.94 Aligned_cols=18 Identities=17% Similarity=0.169 Sum_probs=14.7
Q ss_pred cchhhHHHHHHHHhhhhc
Q 007111 589 QLQVEVFHLKQRLQSLEN 606 (617)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~ 606 (617)
.|+..+..|+.||..|+.
T Consensus 45 ~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 45 RNAELIRHLLEDLGKVRS 62 (77)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 356778899999999983
No 357
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=53.06 E-value=30 Score=38.61 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=21.5
Q ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhH
Q 007111 497 EAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ 538 (617)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~q 538 (617)
++.||+|...-++.|+|.+++++...+++.|++.++.|+..+
T Consensus 79 sELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 79 AQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344555554433333344666665555555555555554443
No 358
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=52.99 E-value=4.6e+02 Score=31.16 Aligned_cols=243 Identities=15% Similarity=0.124 Sum_probs=0.0
Q ss_pred CEEEecCCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEc--ccCCCCCCceEEEEE
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVG--GKTDSGSDRVSVWTF 78 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~G--G~~~~~~~~~~v~~y 78 (617)
+++.|+.++. |-+||....-....=+ -+.....+.+....++.++-.. |. |-.+
T Consensus 364 ~iaTG~eDgK-----VKvWn~~SgfC~vTFt----------eHts~Vt~v~f~~~g~~llssSLDGt---------VRAw 419 (893)
T KOG0291|consen 364 LIATGAEDGK-----VKVWNTQSGFCFVTFT----------EHTSGVTAVQFTARGNVLLSSSLDGT---------VRAW 419 (893)
T ss_pred EEEeccCCCc-----EEEEeccCceEEEEec----------cCCCceEEEEEEecCCEEEEeecCCe---------EEee
Q ss_pred ECCCCc-EEEeeccCCCCCCcceeEEEEEC--CEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEE
Q 007111 79 DTETEC-WSVVEAKGDIPVARSGHTVVRAS--SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 155 (617)
Q Consensus 79 d~~t~~-W~~~~~~g~~P~~R~~~s~~~~~--~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~ 155 (617)
|+..-+ ++... -+.|..++++.++ |.|.+.|+.+.. ++++++..|++-..+- +.-.+=...-+.
T Consensus 420 DlkRYrNfRTft-----~P~p~QfscvavD~sGelV~AG~~d~F-----~IfvWS~qTGqllDiL---sGHEgPVs~l~f 486 (893)
T KOG0291|consen 420 DLKRYRNFRTFT-----SPEPIQFSCVAVDPSGELVCAGAQDSF-----EIFVWSVQTGQLLDIL---SGHEGPVSGLSF 486 (893)
T ss_pred eecccceeeeec-----CCCceeeeEEEEcCCCCEEEeeccceE-----EEEEEEeecCeeeehh---cCCCCcceeeEE
Q ss_pred EECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCC
Q 007111 156 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILK 234 (617)
Q Consensus 156 ~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~ 234 (617)
...+. +++.|-++.. |-++|+ -..|..+.+. +..-...++... +|+-+.+--.++. +-.||+..
T Consensus 487 ~~~~~-~LaS~SWDkT-----VRiW~i-f~s~~~vEtl---~i~sdvl~vsfrPdG~elaVaTldgq-----Itf~d~~~ 551 (893)
T KOG0291|consen 487 SPDGS-LLASGSWDKT-----VRIWDI-FSSSGTVETL---EIRSDVLAVSFRPDGKELAVATLDGQ-----ITFFDIKE 551 (893)
T ss_pred ccccC-eEEeccccce-----EEEEEe-eccCceeeeE---eeccceeEEEEcCCCCeEEEEEecce-----EEEEEhhh
Q ss_pred CcEEEeecCCCCCCCCCc------------ceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcccccccccc
Q 007111 235 GEWSVAITSPSSSVTSNK------------GFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMGRRSTP 299 (617)
Q Consensus 235 ~~W~~l~~~~~~~p~~r~------------~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W~~~w~~~~ 299 (617)
..=...-..-.....+|. +-.-..+-++-++..++.||. .+.|-+||+.+..--.+|+...
T Consensus 552 ~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~----sn~iCiY~v~~~vllkkfqiS~ 624 (893)
T KOG0291|consen 552 AVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGE----SNSICIYDVPEGVLLKKFQISD 624 (893)
T ss_pred ceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCC----cccEEEEECchhheeeeEEecc
No 359
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=52.69 E-value=1.5e+02 Score=34.62 Aligned_cols=119 Identities=25% Similarity=0.244 Sum_probs=60.4
Q ss_pred CchHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHH------------------------
Q 007111 464 PSSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLAD------------------------ 519 (617)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 519 (617)
++...+....++++|-++.+.|++||.+-+...+....-...-=..-.++|++|.+
T Consensus 78 pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SR 157 (617)
T PF15070_consen 78 PSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASR 157 (617)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHH
Confidence 35555667778888888888999888876655554322110000011112222111
Q ss_pred HHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchh-hhHHHHHHHHHHHHHhhhhhccchhhh
Q 007111 520 SLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLE-HDVAFLKAVLDDTQKELHSTRGVLAGE 583 (617)
Q Consensus 520 ~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (617)
++.--..||+.|+.++.+=-..+|-..-+ .+-+-.| |=...|.+-|.++|-+||..+..|+.-
T Consensus 158 AlsQN~eLK~QL~Elq~~Fv~ltne~~el-t~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K 221 (617)
T PF15070_consen 158 ALSQNRELKEQLAELQDAFVKLTNENMEL-TSALQSEQHVKKELQKKLGELQEKLHNLKEKLELK 221 (617)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhhHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11122346666666654433333211111 1112223 334477777888888888887776554
No 360
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=52.60 E-value=38 Score=26.83 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=12.8
Q ss_pred cchhhhHHHHHHHHHHHHHhhh
Q 007111 553 VRLEHDVAFLKAVLDDTQKELH 574 (617)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~ 574 (617)
-.|..++..|+.-+..+..|+|
T Consensus 43 ~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 43 EELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 3344556666666666666655
No 361
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=52.53 E-value=53 Score=39.02 Aligned_cols=77 Identities=25% Similarity=0.266 Sum_probs=49.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhh-----hccc--ccc-cCCCcchhhhHHHHHHHHHHHHHhhh
Q 007111 503 FSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEA-----NSLS--NIV-HSDNVRLEHDVAFLKAVLDDTQKELH 574 (617)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~-----~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (617)
++..-+-...|..++....+|.+.|+++++.+|..=+.. .+-+ -|+ -.+|+..++.-. -++.|+.+|+|-.
T Consensus 498 ~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~-k~~~l~~L~~En~ 576 (722)
T PF05557_consen 498 LSSLSEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQI-KKSTLEALQAENE 576 (722)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHH-HHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHH-HHHHHHHHHHHHH
Confidence 344444455677888888888888888888887555431 1212 233 367888776632 3788888888877
Q ss_pred hhccch
Q 007111 575 STRGVL 580 (617)
Q Consensus 575 ~~~~~~ 580 (617)
-.|.-|
T Consensus 577 ~L~~~l 582 (722)
T PF05557_consen 577 DLLARL 582 (722)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666555
No 362
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=52.38 E-value=3.4e+02 Score=29.93 Aligned_cols=134 Identities=16% Similarity=0.224 Sum_probs=74.0
Q ss_pred EEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCC---cEEEeecCCCCCCCC
Q 007111 74 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL---TWLPLHCTGTGPSPR 149 (617)
Q Consensus 74 ~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~---~W~~l~~~g~~P~~R 149 (617)
.++.+|..+..-...-..+ .+-+..+++.+ ++.=+|.|+.+ ..+.++|.+.+ .|.-+. .++
T Consensus 292 ~~~lwDv~tgd~~~~y~~~---~~~S~~sc~W~pDg~~~V~Gs~d------r~i~~wdlDgn~~~~W~gvr------~~~ 356 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPSG---LGFSVSSCAWCPDGFRFVTGSPD------RTIIMWDLDGNILGNWEGVR------DPK 356 (519)
T ss_pred heeeccCCcchhhhhcccC---cCCCcceeEEccCCceeEecCCC------CcEEEecCCcchhhcccccc------cce
Confidence 3667777666543332111 12223334443 56667777765 34778887765 588553 245
Q ss_pred cccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEE
Q 007111 150 SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETL 228 (617)
Q Consensus 150 ~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~ 228 (617)
..--+...+|+++++++- + ..+..|+.++..-..+... ..|. ++.+.- +++++++-=.+ .++.
T Consensus 357 v~dlait~Dgk~vl~v~~-d-----~~i~l~~~e~~~dr~lise---~~~i--ts~~iS~d~k~~LvnL~~-----qei~ 420 (519)
T KOG0293|consen 357 VHDLAITYDGKYVLLVTV-D-----KKIRLYNREARVDRGLISE---EQPI--TSFSISKDGKLALVNLQD-----QEIH 420 (519)
T ss_pred eEEEEEcCCCcEEEEEec-c-----cceeeechhhhhhhccccc---cCce--eEEEEcCCCcEEEEEccc-----CeeE
Confidence 555566678887888762 2 3477888877655533332 2222 333333 56666663322 4577
Q ss_pred EEECCCCcEEEe
Q 007111 229 IFDILKGEWSVA 240 (617)
Q Consensus 229 ~yDl~~~~W~~l 240 (617)
.+|+. .|..+
T Consensus 421 LWDl~--e~~lv 430 (519)
T KOG0293|consen 421 LWDLE--ENKLV 430 (519)
T ss_pred Eeecc--hhhHH
Confidence 88876 44443
No 363
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=51.96 E-value=79 Score=26.16 Aligned_cols=58 Identities=21% Similarity=0.240 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhh
Q 007111 515 KKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHS 575 (617)
Q Consensus 515 ~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (617)
++.....+|+...+.++..+ .+.++.|.+.-|.+...+...+.-|..-.+.+...++.
T Consensus 41 ~~~~~~~~ei~~~~~~l~~l---~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~ 98 (105)
T PF00435_consen 41 KKHKELQEEIESRQERLESL---NEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELVEE 98 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHH---HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555544444444 36666666666777777777777777777776665543
No 364
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=51.85 E-value=33 Score=32.07 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 007111 508 KSRQEMEKKLADSLKEMELLKEKLAGLEL 536 (617)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~lkek~~~~e~ 536 (617)
...+.++.+++...+++..++++...++.
T Consensus 73 ~~~~rL~~~~~~~ere~~~~~~~~~~l~~ 101 (151)
T PF11559_consen 73 NDVERLKEQLEELERELASAEEKERQLQK 101 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666665555555543
No 365
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=51.82 E-value=2.5e+02 Score=27.69 Aligned_cols=69 Identities=19% Similarity=0.299 Sum_probs=44.5
Q ss_pred CccCeEEEEECCCCcEEEeecCCCCC---CCCcccEEEEECC-cEEEEEccC-CCCCCCCeEEEEECCCCcEEEeecC
Q 007111 121 RKLNDLHMFDLKSLTWLPLHCTGTGP---SPRSNHVAALYDD-KNLLIFGGS-SKSKTLNDLYSLDFETMIWTRIKIR 193 (617)
Q Consensus 121 ~~~~~v~~yD~~t~~W~~l~~~g~~P---~~R~~h~a~~~~~-~~LyV~GG~-~~~~~~n~v~~yD~~t~~W~~~~~~ 193 (617)
+-..++|++|..++.|..+... +.+ .|. -+.++++ ..++|+|.. +.-.--..+|.|++.++.-+.+...
T Consensus 85 EgiGkIYIkn~~~~~~~~L~i~-~~~~k~sPK---~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~ 158 (200)
T PF15525_consen 85 EGIGKIYIKNLNNNNWWSLQID-QNEEKYSPK---YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEW 158 (200)
T ss_pred ccceeEEEEecCCCceEEEEec-CcccccCCc---eeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeec
Confidence 4578899999999998776422 221 223 3344444 455666633 2222345799999999998888764
No 366
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=51.76 E-value=1.8e+02 Score=27.64 Aligned_cols=97 Identities=23% Similarity=0.300 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH-------HHHHHh---hhHHh
Q 007111 468 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMEL-------LKEKLA---GLELA 537 (617)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------lkek~~---~~e~~ 537 (617)
|+.|...+..+...-..+-+|+++++..++....+...|-..-..+-..=...++|... +.++|. .+|..
T Consensus 2 y~~y~~~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~i 81 (157)
T PF04136_consen 2 YRQYLDYLQQYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPI 81 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHH
Confidence 46677777777777777777888887777777777777754444444444444444433 444442 45666
Q ss_pred HHhhhcccccccCCCc-----chhhhHHHHHH
Q 007111 538 QEEANSLSNIVHSDNV-----RLEHDVAFLKA 564 (617)
Q Consensus 538 qe~~~~~~~~~~~~~~-----~~~~~~~~~~~ 564 (617)
...-|+-...|.++-. ||+.-++||.+
T Consensus 82 tr~Ln~p~~sV~~~~F~~~L~~LD~cl~Fl~~ 113 (157)
T PF04136_consen 82 TRRLNSPGSSVNSDSFKPMLSRLDECLEFLEE 113 (157)
T ss_pred HHHHcCCCCcccchHHHHHHHHHHHHHHHHHH
Confidence 6777766555555443 45555666664
No 367
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=51.74 E-value=1.1e+02 Score=35.79 Aligned_cols=106 Identities=21% Similarity=0.248 Sum_probs=58.6
Q ss_pred HHHHhchhhHhHHHHhhcH-------HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccC
Q 007111 478 LIRKNGILEGQLAAALVNR-------EAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHS 550 (617)
Q Consensus 478 ~~~~~~~~~~q~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~ 550 (617)
|..+...|+.|+.+..++- -..|..+...+.+.+.+++.+.-..--+|.+|-|.+.+.
T Consensus 501 L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~--------------- 565 (698)
T KOG0978|consen 501 LREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAK--------------- 565 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 3444444444444444433 333444444455555555555555556666666665543
Q ss_pred CCcchhhhHHHHHHHHHHHHHhh-------hhhccchhhhccccccchhhHHHHHHHHhhh
Q 007111 551 DNVRLEHDVAFLKAVLDDTQKEL-------HSTRGVLAGERARAFQLQVEVFHLKQRLQSL 604 (617)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (617)
..+.+|+.-++.-++.| --++--|--|+-..++||-|.-.|+..|--+
T Consensus 566 ------~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~ 620 (698)
T KOG0978|consen 566 ------QSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERL 620 (698)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445554444444444 4444455567778888888888888766543
No 368
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=51.27 E-value=5.1e+02 Score=31.16 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=22.4
Q ss_pred eEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEe
Q 007111 101 HTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPL 139 (617)
Q Consensus 101 ~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l 139 (617)
.+-+.+++.+|+... .+.++.+|..+.+ |+.-
T Consensus 188 ~TPlvvgg~lYv~t~-------~~~V~ALDa~TGk~lW~~d 221 (764)
T TIGR03074 188 ATPLKVGDTLYLCTP-------HNKVIALDAATGKEKWKFD 221 (764)
T ss_pred cCCEEECCEEEEECC-------CCeEEEEECCCCcEEEEEc
Confidence 344567899999732 3568899988775 8854
No 369
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=50.79 E-value=50 Score=33.04 Aligned_cols=62 Identities=31% Similarity=0.286 Sum_probs=26.8
Q ss_pred HHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHh
Q 007111 478 LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEE 540 (617)
Q Consensus 478 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~ 540 (617)
++++-.+++++ ..|...-+++.+.+..--+=-+++.+..|+..+-.++|++|-..+|.||++
T Consensus 119 ll~~l~~l~~~-~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~ 180 (216)
T KOG1962|consen 119 LLRELATLRAN-EKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKK 180 (216)
T ss_pred HHHHHHHHHhh-HHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444333 333333444444332222212334444444555455555555566655543
No 370
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=50.76 E-value=66 Score=25.95 Aligned_cols=53 Identities=30% Similarity=0.401 Sum_probs=41.0
Q ss_pred chhhHhHHHHhhcHHHHhhhhhhh---hhh-HHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007111 483 GILEGQLAAALVNREAAEKNFSSV---LKS-RQEMEKKLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 483 ~~~~~q~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~lkek~~~~e 535 (617)
+.|..+|+-=+.-++-||+=+... -+. +++++.+|.++.+.++.|+++|..+.
T Consensus 4 ~~L~~~i~~E~ki~~Gae~m~~~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~ 60 (70)
T PF02185_consen 4 EELQKKIDKELKIKEGAENMLQAYSTDKKKVLSEAESQLRESNQKIELLREQLEKLQ 60 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777788888766642 224 78999999999999999999998775
No 371
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=50.68 E-value=4.1e+02 Score=29.90 Aligned_cols=148 Identities=15% Similarity=0.133 Sum_probs=74.6
Q ss_pred ceEEEEECCCCcEEEccccccCC-CCCCC-CCCCccc--ceEEEEECCEEEEE-cccCCCCCCceEEEEEECCCCcEEEe
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLS-PSSLP-LKIPACR--GHSLISWGKKVLLV-GGKTDSGSDRVSVWTFDTETECWSVV 88 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~-p~~~~-~~~p~r~--~hs~v~~g~~lyV~-GG~~~~~~~~~~v~~yd~~t~~W~~~ 88 (617)
.+++.|||.+.+-+++.-..... ....+ ...|..+ .+++ +-|+.+-++ -| ..+++++-.+--.++
T Consensus 287 GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~-~~Gd~ia~VSRG---------kaFi~~~~~~~~iqv 356 (668)
T COG4946 287 GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAV-VNGDYIALVSRG---------KAFIMRPWDGYSIQV 356 (668)
T ss_pred CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhcc-CCCcEEEEEecC---------cEEEECCCCCeeEEc
Confidence 47999999999987775321000 00000 0011111 1211 223333322 12 255555444333333
Q ss_pred eccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccC
Q 007111 89 EAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGS 168 (617)
Q Consensus 89 ~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~ 168 (617)
+. ..|..+.-...++.-.++|-.+++ .+.+||..+..-+++. .+.++.....+.-+++++ +++-.
T Consensus 357 ~~-----~~~VrY~r~~~~~e~~vigt~dgD-----~l~iyd~~~~e~kr~e----~~lg~I~av~vs~dGK~~-vvaNd 421 (668)
T COG4946 357 GK-----KGGVRYRRIQVDPEGDVIGTNDGD-----KLGIYDKDGGEVKRIE----KDLGNIEAVKVSPDGKKV-VVAND 421 (668)
T ss_pred CC-----CCceEEEEEccCCcceEEeccCCc-----eEEEEecCCceEEEee----CCccceEEEEEcCCCcEE-EEEcC
Confidence 31 222333333334446777766553 5899999999888774 344444434444455633 33322
Q ss_pred CCCCCCCeEEEEECCCCcEEEee
Q 007111 169 SKSKTLNDLYSLDFETMIWTRIK 191 (617)
Q Consensus 169 ~~~~~~n~v~~yD~~t~~W~~~~ 191 (617)
.-++|++|+.++.-+.+.
T Consensus 422 -----r~el~vididngnv~~id 439 (668)
T COG4946 422 -----RFELWVIDIDNGNVRLID 439 (668)
T ss_pred -----ceEEEEEEecCCCeeEec
Confidence 135999999988776553
No 372
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.54 E-value=2.9e+02 Score=30.13 Aligned_cols=154 Identities=18% Similarity=0.205 Sum_probs=72.1
Q ss_pred CEEEecCCCCCccceEEEEECCCC--cEEEccccccCCCCCCCCCCCcccceEEEEECC---EEEEEcccCCCCCCceEE
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGK---KVLLVGGKTDSGSDRVSV 75 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~---~lyV~GG~~~~~~~~~~v 75 (617)
|+.+||... .+.+.+||+... .|+.-.. .+..+.+-.|- +...+..+.+ +.|+.+- .+..|
T Consensus 163 Iva~GGke~---~n~lkiwdle~~~qiw~aKNv----pnD~L~LrVPv-W~tdi~Fl~g~~~~~fat~T------~~hqv 228 (412)
T KOG3881|consen 163 IVATGGKEN---INELKIWDLEQSKQIWSAKNV----PNDRLGLRVPV-WITDIRFLEGSPNYKFATIT------RYHQV 228 (412)
T ss_pred eEecCchhc---ccceeeeecccceeeeeccCC----CCccccceeee-eeccceecCCCCCceEEEEe------cceeE
Confidence 455677542 466777777544 4643322 11112122222 2233333332 3333321 23468
Q ss_pred EEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEE
Q 007111 76 WTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 155 (617)
Q Consensus 76 ~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~ 155 (617)
-.||+..++- ++....-+-.+.+.-+.+ .++.++++|- +...+..||..+.+-......|---..| ...
T Consensus 229 R~YDt~~qRR-PV~~fd~~E~~is~~~l~-p~gn~Iy~gn------~~g~l~~FD~r~~kl~g~~~kg~tGsir---sih 297 (412)
T KOG3881|consen 229 RLYDTRHQRR-PVAQFDFLENPISSTGLT-PSGNFIYTGN------TKGQLAKFDLRGGKLLGCGLKGITGSIR---SIH 297 (412)
T ss_pred EEecCcccCc-ceeEeccccCcceeeeec-CCCcEEEEec------ccchhheecccCceeeccccCCccCCcc---eEE
Confidence 9999986652 222110112222222222 2334444432 4556888998877654332111111122 233
Q ss_pred EECCcEEEEEccCCCCCCCCeEEEEECCC
Q 007111 156 LYDDKNLLIFGGSSKSKTLNDLYSLDFET 184 (617)
Q Consensus 156 ~~~~~~LyV~GG~~~~~~~n~v~~yD~~t 184 (617)
.+.+..++..+|.+.. +-+||.++
T Consensus 298 ~hp~~~~las~GLDRy-----vRIhD~kt 321 (412)
T KOG3881|consen 298 CHPTHPVLASCGLDRY-----VRIHDIKT 321 (412)
T ss_pred EcCCCceEEeecccee-----EEEeeccc
Confidence 3444347777887643 66778766
No 373
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.47 E-value=1.3e+02 Score=34.22 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=19.5
Q ss_pred cchhhhHHHHHHHHHHHHHhhhhh
Q 007111 553 VRLEHDVAFLKAVLDDTQKELHST 576 (617)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~ 576 (617)
+-||.|++-+.++|..+|.|+.+-
T Consensus 110 ~eleneLKq~r~el~~~q~E~erl 133 (772)
T KOG0999|consen 110 LELENELKQLRQELTNVQEENERL 133 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999887653
No 374
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=50.46 E-value=1.5e+02 Score=24.83 Aligned_cols=68 Identities=15% Similarity=0.250 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007111 467 IYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 534 (617)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~ 534 (617)
+..-.|.||+++|--.+.|.-.++..-.-..+.......+..+|.+++.+-...-.|...-.++|-++
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777666666665555555544445555555555566666666666555666666666554
No 375
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=50.46 E-value=1.1e+02 Score=24.40 Aligned_cols=55 Identities=22% Similarity=0.317 Sum_probs=38.5
Q ss_pred HhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhh
Q 007111 487 GQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEA 541 (617)
Q Consensus 487 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~ 541 (617)
..|++=...|..+...|.-|-.+...+++||.++.+-...|.++|..++.-=||+
T Consensus 4 saL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 4 SALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556666777777776767778888888887777777777777776555543
No 376
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=50.38 E-value=1.3e+02 Score=25.11 Aligned_cols=69 Identities=19% Similarity=0.325 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhh-hhhHHHHHHHHH---HHHHHHHHHHHHHhhhHH
Q 007111 466 SIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV-LKSRQEMEKKLA---DSLKEMELLKEKLAGLEL 536 (617)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~lkek~~~~e~ 536 (617)
++....-..+..++....-+-..+.... +..+++-++.. +=||+|.|..-+ .+-..++.|..||+.+|.
T Consensus 6 ~~~d~~~~~~~~~~~~~~~~~~e~e~~~--r~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 6 KIFDDLAKQISEALPAAQGPREEIEKNI--RARLQSALSKLDLVTREEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHH--HHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555555666666554433322222221 22233333333 446777775543 445577888888888873
No 377
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=50.23 E-value=1.2e+02 Score=32.60 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=11.0
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhc
Q 007111 554 RLEHDVAFLKAVLDDTQKELHSTR 577 (617)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~ 577 (617)
+|++|++|-+++++...+-+..+|
T Consensus 282 ~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 282 RLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555554444444443333
No 378
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=49.91 E-value=1.4e+02 Score=30.46 Aligned_cols=108 Identities=14% Similarity=0.152 Sum_probs=66.4
Q ss_pred ECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEEC--CEEEEEeecCCCCCccCeEEEEECC
Q 007111 55 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS--SVLILFGGEDGKRRKLNDLHMFDLK 132 (617)
Q Consensus 55 ~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~--~~IYv~GG~~~~~~~~~~v~~yD~~ 132 (617)
.++.-|.-||.+ ..+.+||..|.+-...- .-..+.. -.+.++ ..+.+-|+.+. ++.+||..
T Consensus 69 ~Dnskf~s~GgD------k~v~vwDV~TGkv~Rr~---rgH~aqV--NtV~fNeesSVv~SgsfD~------s~r~wDCR 131 (307)
T KOG0316|consen 69 SDNSKFASCGGD------KAVQVWDVNTGKVDRRF---RGHLAQV--NTVRFNEESSVVASGSFDS------SVRLWDCR 131 (307)
T ss_pred ccccccccCCCC------ceEEEEEcccCeeeeec---cccccee--eEEEecCcceEEEeccccc------eeEEEEcc
Confidence 355445555532 24888899887632221 0011111 122233 46777776544 58899999
Q ss_pred CCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEE
Q 007111 133 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWT 188 (617)
Q Consensus 133 t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~ 188 (617)
++..++++ .+..++.+-.++.+.+. .+|.|-.++. +-.||+..++-.
T Consensus 132 S~s~ePiQ---ildea~D~V~Si~v~~h-eIvaGS~DGt-----vRtydiR~G~l~ 178 (307)
T KOG0316|consen 132 SRSFEPIQ---ILDEAKDGVSSIDVAEH-EIVAGSVDGT-----VRTYDIRKGTLS 178 (307)
T ss_pred cCCCCccc---hhhhhcCceeEEEeccc-EEEeeccCCc-----EEEEEeecceee
Confidence 99998885 56677888788888888 6666655554 778888766543
No 379
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=49.90 E-value=15 Score=29.82 Aligned_cols=34 Identities=29% Similarity=0.519 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhh
Q 007111 558 DVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLE 605 (617)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (617)
-|.-|+.|+-+-|+++. .|+-.+.+|.+||.+|+
T Consensus 19 ~ie~Ln~~v~~Qq~~I~--------------~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 19 TIEELNDVVTEQQRQID--------------RLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhc
Confidence 34556666666666665 46678899999999998
No 380
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=49.77 E-value=4e+02 Score=29.54 Aligned_cols=120 Identities=11% Similarity=0.104 Sum_probs=61.9
Q ss_pred CcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceE
Q 007111 149 RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAET 227 (617)
Q Consensus 149 R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v 227 (617)
...++++++.+..|+..|-.++ .+-.||+.... .+... |.--.--..+.+ .|..|++-+..+ ..+
T Consensus 348 v~~ts~~fHpDgLifgtgt~d~-----~vkiwdlks~~--~~a~F---pght~~vk~i~FsENGY~Lat~add----~~V 413 (506)
T KOG0289|consen 348 VEYTSAAFHPDGLIFGTGTPDG-----VVKIWDLKSQT--NVAKF---PGHTGPVKAISFSENGYWLATAADD----GSV 413 (506)
T ss_pred ceeEEeeEcCCceEEeccCCCc-----eEEEEEcCCcc--ccccC---CCCCCceeEEEeccCceEEEEEecC----CeE
Confidence 4455667777773444443332 47788887665 33332 111111122333 444444444332 237
Q ss_pred EEEECCCCc-EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCccccc
Q 007111 228 LIFDILKGE-WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMG 294 (617)
Q Consensus 228 ~~yDl~~~~-W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W~~~ 294 (617)
..+|+++.. ...++ .....+..++.++.. +..+++||.+ -.|++|+..+..|+..
T Consensus 414 ~lwDLRKl~n~kt~~------l~~~~~v~s~~fD~S--Gt~L~~~g~~----l~Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 414 KLWDLRKLKNFKTIQ------LDEKKEVNSLSFDQS--GTYLGIAGSD----LQVYICKKKTKSWTEI 469 (506)
T ss_pred EEEEehhhcccceee------ccccccceeEEEcCC--CCeEEeecce----eEEEEEecccccceee
Confidence 788887654 22222 122334455555543 5567777652 2567777778889664
No 381
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=49.63 E-value=85 Score=34.40 Aligned_cols=96 Identities=24% Similarity=0.229 Sum_probs=58.5
Q ss_pred hchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHH---------------HHHHHHHHHHHHhhhHHhHHhhhcccc
Q 007111 482 NGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLAD---------------SLKEMELLKEKLAGLELAQEEANSLSN 546 (617)
Q Consensus 482 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~lkek~~~~e~~qe~~~~~~~ 546 (617)
--..|+-|.+....+|-|...--.|--.++.||+|+-+ ..||.|.|++.|..+|.. =|+|+=..
T Consensus 254 Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~L~kAEke-le~nS~ws 332 (575)
T KOG4403|consen 254 LQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVALEKAEKE-LEANSSWS 332 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHH-HHhccCCC
Confidence 33456666666666665544433444456777877762 336778899888887755 34565333
Q ss_pred cccCC----CcchhhhHHHHHHHHHHHHHhhhhhcc
Q 007111 547 IVHSD----NVRLEHDVAFLKAVLDDTQKELHSTRG 578 (617)
Q Consensus 547 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (617)
.+-+= -++-|-||+|+.---.+..|+|.+.++
T Consensus 333 aP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake 368 (575)
T KOG4403|consen 333 APLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKE 368 (575)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33322 123456788887777777777776654
No 382
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=49.57 E-value=1.4e+02 Score=30.74 Aligned_cols=96 Identities=16% Similarity=0.180 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccc
Q 007111 467 IYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSN 546 (617)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~ 546 (617)
-.+.++.++..|......|..|...+++.-+++..+....++.-+.++..+..+...+..|-+++..+-. |
T Consensus 46 ~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~---------~ 116 (264)
T PF06008_consen 46 QLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE---------N 116 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc---------c
Confidence 3466777788888888888888888888888887777777777777777777777777777777766542 2
Q ss_pred cccCCCcchhhhHHHHHHHHHHHHH
Q 007111 547 IVHSDNVRLEHDVAFLKAVLDDTQK 571 (617)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (617)
.--..+..|..-++-.+..|++.++
T Consensus 117 ~~~~~~~~l~~~l~ea~~mL~emr~ 141 (264)
T PF06008_consen 117 GDQLPSEDLQRALAEAQRMLEEMRK 141 (264)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 2333445566666666666666654
No 383
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=49.18 E-value=1e+02 Score=36.62 Aligned_cols=67 Identities=15% Similarity=0.200 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHH---HHHHHHHHHHHHHHHHHHHHhhhHH
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQ---EMEKKLADSLKEMELLKEKLAGLEL 536 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~lkek~~~~e~ 536 (617)
+..+.|.+..-+-.+=|++||..+...+++||+.|..- |.+. .++......+.++..|+.+++.++.
T Consensus 256 ~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~f-r~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~ 325 (726)
T PRK09841 256 QNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVY-RQQRDSVDLNLEAKAVLEQIVNVDNQLNELTF 325 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777889999999999999999987653 2211 0111122233344556666655543
No 384
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=49.15 E-value=3.9e+02 Score=29.19 Aligned_cols=137 Identities=10% Similarity=0.058 Sum_probs=71.7
Q ss_pred CCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeec--CCCCCCCC--cccEEEEE
Q 007111 82 TECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHC--TGTGPSPR--SNHVAALY 157 (617)
Q Consensus 82 t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~--~g~~P~~R--~~h~a~~~ 157 (617)
.+.|+.+. . ... ..--++..+|++|++. ....++.++.. ..-.++.+ .+.+..++ ...-.+..
T Consensus 189 ~~~Wt~l~---~-~~~-~~~DIi~~kGkfYAvD-------~~G~l~~i~~~-l~i~~v~~~i~~~~~~g~~~~~~yLVEs 255 (373)
T PLN03215 189 GNVLKALK---Q-MGY-HFSDIIVHKGQTYALD-------SIGIVYWINSD-LEFSRFGTSLDENITDGCWTGDRRFVEC 255 (373)
T ss_pred CCeeeEcc---C-CCc-eeeEEEEECCEEEEEc-------CCCeEEEEecC-CceeeecceecccccCCcccCceeEEEE
Confidence 48899886 2 222 3456788899999982 12457777742 12222211 01111121 12234555
Q ss_pred CCcEEEEEccCCCC--------------CCCCeEEEEECCCCcEEEeecCCCCCC--C-CcceEEEE------ECCEEEE
Q 007111 158 DDKNLLIFGGSSKS--------------KTLNDLYSLDFETMIWTRIKIRGFHPS--P-RAGCCGVL------CGTKWYI 214 (617)
Q Consensus 158 ~~~~LyV~GG~~~~--------------~~~n~v~~yD~~t~~W~~~~~~g~~P~--~-R~~ha~v~------~~~~IyI 214 (617)
.|. |+++..+... ...=.||..|.+..+|.++...++... + ....++.. .+|.||+
T Consensus 256 ~Gd-LLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYF 334 (373)
T PLN03215 256 CGE-LYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYF 334 (373)
T ss_pred CCE-EEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEE
Confidence 677 7777764211 011246777888999999987643210 0 11111111 1467777
Q ss_pred EecCCCCCccceEEEEECCCCcEEE
Q 007111 215 AGGGSRKKRHAETLIFDILKGEWSV 239 (617)
Q Consensus 215 ~GG~s~~~~~~~v~~yDl~~~~W~~ 239 (617)
... ...++||++..+=+.
T Consensus 335 tdd-------~~~~v~~~~dg~~~~ 352 (373)
T PLN03215 335 TED-------TMPKVFKLDNGNGSS 352 (373)
T ss_pred ECC-------CcceEEECCCCCccc
Confidence 743 235688887765333
No 385
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=48.93 E-value=57 Score=37.96 Aligned_cols=115 Identities=30% Similarity=0.325 Sum_probs=64.8
Q ss_pred HHHHHhchhhHhHHHHhhcHHHHhhh---hhhhhhhHHHHHHHHHHHHHHH----HHHHHHHhhhHHhHHhhhccccc--
Q 007111 477 ALIRKNGILEGQLAAALVNREAAEKN---FSSVLKSRQEMEKKLADSLKEM----ELLKEKLAGLELAQEEANSLSNI-- 547 (617)
Q Consensus 477 ~~~~~~~~~~~q~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~lkek~~~~e~~qe~~~~~~~~-- 547 (617)
-++.-|-.|..||+.....--..-++ |.+.|.+-|++.++|+..+-++ ..+||+|+.-+ +|+.+|.+.
T Consensus 157 RAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~---qE~~~Lq~q~d 233 (617)
T PF15070_consen 157 RALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKS---QEAQSLQEQRD 233 (617)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHH
Confidence 35556667777777665544444443 3667888887776666555544 34777665442 344444332
Q ss_pred ---------------ccCCCc--------------chhhhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhH
Q 007111 548 ---------------VHSDNV--------------RLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEV 594 (617)
Q Consensus 548 ---------------~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (617)
+++++= ||-|+=+--|++++-..|||.-++.-|..=+..-.|||..+
T Consensus 234 q~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~ql 309 (617)
T PF15070_consen 234 QYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQL 309 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 111111 34444455566667777777777666655555555555444
No 386
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=48.88 E-value=67 Score=36.83 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhh
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSS 505 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~ 505 (617)
.++.++..|-++|..|+..|..--+..|..|..|..
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~ 461 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIEKLESELER 461 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555444444
No 387
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=48.46 E-value=25 Score=31.10 Aligned_cols=68 Identities=19% Similarity=0.303 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhh
Q 007111 508 KSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHS 575 (617)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (617)
.|+.+++-+|+...+++|.+|.-...+-.-.++-.+.-|..-..|--..+.++-|.|=++|+-+.|.+
T Consensus 9 as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 9 ASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666665544444422234444444445555666778888888888888777666
No 388
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=48.39 E-value=2.7e+02 Score=30.31 Aligned_cols=139 Identities=23% Similarity=0.226 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhh-----------HHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 007111 468 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKS-----------RQEMEKKLADSLKEMELLKEKLAGLEL 536 (617)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~lkek~~~~e~ 536 (617)
+|...++++.|......|+.|+...+++.-+.....+- +|+ .++-++.||.--..++.+.|.++-.+-
T Consensus 146 ~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Q-lk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~a 224 (499)
T COG4372 146 AQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQ-LKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAA 224 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888999888877776655522111 121 112223333333334445555544432
Q ss_pred h----HHhhhccccccc--------CCC---------cchhhhHHHHHHHHHHHHHhhhhhc-----------c-chhhh
Q 007111 537 A----QEEANSLSNIVH--------SDN---------VRLEHDVAFLKAVLDDTQKELHSTR-----------G-VLAGE 583 (617)
Q Consensus 537 ~----qe~~~~~~~~~~--------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~ 583 (617)
| +.+.|-+.-++. -+| -+||.+.+||.-+.+++++=-++-+ | |||+-
T Consensus 225 a~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ~y~~lr~q~~a~~rGQvla~a 304 (499)
T COG4372 225 AAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQAAATQRGQVLAGA 304 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2 122222221111 111 2567777777777777776555543 3 45555
Q ss_pred ccccccchhhHHHHHHHHhhhhccC
Q 007111 584 RARAFQLQVEVFHLKQRLQSLENRA 608 (617)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (617)
=-|--|-|..-.-.-|+|++ -||.
T Consensus 305 ~~rv~q~~a~~qa~~qll~~-AnR~ 328 (499)
T COG4372 305 AQRVAQAQAQAQAQAQLLSS-ANRP 328 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCC
Confidence 45555555555556666766 3443
No 389
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=48.29 E-value=44 Score=29.63 Aligned_cols=72 Identities=24% Similarity=0.294 Sum_probs=0.0
Q ss_pred chhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHH
Q 007111 483 GILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFL 562 (617)
Q Consensus 483 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~ 562 (617)
+.+-+|+.+..+..+.++.++- +|-+....--+..-+-+.+|-+.++.+| +.=..+..||+..
T Consensus 4 a~~~~q~~~l~~~v~~lRed~r---~SEdrsa~SRa~mhrRlDElV~Rv~~lE--------------s~~~~lk~dVsem 66 (112)
T PF07439_consen 4 AGLHQQLGTLNAEVKELREDIR---RSEDRSAASRASMHRRLDELVERVTTLE--------------SSVSTLKADVSEM 66 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHhHHHHHHHHHHHH--------------HHHHHHHhhHHhc
Q ss_pred HHHHHHHHH
Q 007111 563 KAVLDDTQK 571 (617)
Q Consensus 563 ~~~~~~~~~ 571 (617)
|+|.+|..+
T Consensus 67 KpVT~dV~r 75 (112)
T PF07439_consen 67 KPVTDDVKR 75 (112)
T ss_pred cchHHHHHH
No 390
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=47.94 E-value=1.2e+02 Score=29.47 Aligned_cols=30 Identities=17% Similarity=0.178 Sum_probs=11.0
Q ss_pred HHHHhhcHHHHhhhhhhhhhhHHHHHHHHH
Q 007111 489 LAAALVNREAAEKNFSSVLKSRQEMEKKLA 518 (617)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (617)
+.......+++++.+..+..+-..|+.|-+
T Consensus 19 ~~~~~~~l~~l~~ai~~~~~~~~~LkGka~ 48 (204)
T PF04740_consen 19 LKELKEQLESLQKAINQFISSESSLKGKAY 48 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchhhhHHH
Confidence 333333333333333333333333333333
No 391
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=47.89 E-value=1.3e+02 Score=31.60 Aligned_cols=14 Identities=29% Similarity=0.164 Sum_probs=5.7
Q ss_pred HHHHHHhhhhccCC
Q 007111 596 HLKQRLQSLENRAP 609 (617)
Q Consensus 596 ~~~~~~~~~~~~~~ 609 (617)
..+..|..++=|||
T Consensus 197 ~a~~~l~~~~I~AP 210 (334)
T TIGR00998 197 TAWLALKRTVIRAP 210 (334)
T ss_pred HHHHHhhCcEEEcC
Confidence 33334444444444
No 392
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=47.75 E-value=44 Score=28.94 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=14.8
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhccchh
Q 007111 555 LEHDVAFLKAVLDDTQKELHSTRGVLA 581 (617)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (617)
|+..+.-++.-++..++++...|..|.
T Consensus 57 l~~~i~~~~~~~~~~~~~~~~~r~~l~ 83 (123)
T PF02050_consen 57 LEQAIQQQQQELERLEQEVEQAREELQ 83 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555443
No 393
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=47.51 E-value=1.2e+02 Score=29.16 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=20.2
Q ss_pred HHHHHHHhchhhHhHHHHhhcHHHHhhhhhhh
Q 007111 475 MAALIRKNGILEGQLAAALVNREAAEKNFSSV 506 (617)
Q Consensus 475 ~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~ 506 (617)
..-+=.|.....++|++|-..+++|++.+...
T Consensus 44 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~ 75 (175)
T PRK14472 44 LSALEEREKGIQSSIDRAHSAKDEAEAILRKN 75 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566667777777777777777654443
No 394
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=47.44 E-value=3.6e+02 Score=29.93 Aligned_cols=179 Identities=17% Similarity=0.242 Sum_probs=87.3
Q ss_pred CccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeec
Q 007111 11 GLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEA 90 (617)
Q Consensus 11 ~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 90 (617)
..+++++++|-.-+-=-++.- +.+--|. +++-..|+..|++-=. ..+-+++.|+.+-.=-++-
T Consensus 403 e~~N~vYilDe~lnvvGkltG----------l~~gERI-YAvRf~gdv~yiVTfr-----qtDPlfviDlsNPenPkvl- 465 (603)
T COG4880 403 EPVNAVYILDENLNVVGKLTG----------LAPGERI-YAVRFVGDVLYIVTFR-----QTDPLFVIDLSNPENPKVL- 465 (603)
T ss_pred CccceeEEEcCCCcEEEEEec----------cCCCceE-EEEEEeCceEEEEEEe-----ccCceEEEEcCCCCCCcee-
Confidence 456778888766655444443 3333443 5555668888887432 2345788887654311111
Q ss_pred cCCCCCCcceeEEEEECC-EEEEEeecCCCCCccCeEEEEECCC-------------CcEEEeecCCCCCCCCcccEEEE
Q 007111 91 KGDIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKS-------------LTWLPLHCTGTGPSPRSNHVAAL 156 (617)
Q Consensus 91 ~g~~P~~R~~~s~~~~~~-~IYv~GG~~~~~~~~~~v~~yD~~t-------------~~W~~l~~~g~~P~~R~~h~a~~ 156 (617)
|.+.-+-+.--.-.+|+ .++=+|-..++ -++-.||... +-|+.+ .+.|-+..
T Consensus 466 -GeLKIPGfS~YLHpigen~~lGvG~~~g~----vKiSLFdiSdl~~PkEv~~y~l~~~wspv---------f~dhHAFl 531 (603)
T COG4880 466 -GELKIPGFSEYLHPIGENRLLGVGAYQGG----VKISLFDISDLAAPKEVSNYTLSNAWSPV---------FYDHHAFL 531 (603)
T ss_pred -EEEecCCchhhccccCCCcEEEeecccCC----ceEEEEeccCCCCchhhhheehhhhcchh---------hhccceee
Confidence 12222222222333443 44444433322 2455666543 234422 34555666
Q ss_pred ECCc-EEEEEccCCCCCCCCeEEEEECCCCcEEEeecC--CCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECC
Q 007111 157 YDDK-NLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR--GFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 233 (617)
Q Consensus 157 ~~~~-~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~--g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~ 233 (617)
++.. .|+..--+. .-+.|-.+.+ .++... -..+.-| +..+++.+|++|| +++|.||-
T Consensus 532 ~d~~~~ifFlPay~------~gyif~iedg--~kl~k~~e~k~na~R----A~fi~dylY~vg~-------~ev~~lde- 591 (603)
T COG4880 532 YDPEAEIFFLPAYL------GGYIFFIEDG--SKLRKRAERKLNADR----AFFIKDYLYLVGG-------NEVWKLDE- 591 (603)
T ss_pred cCCcccEEEecccC------ccEEEEEecC--ceeeehhhhccccee----eEEecceEEEecc-------ceeEEecc-
Confidence 6544 233322111 1223433333 222211 1112223 3557999999999 56888874
Q ss_pred CCcEEEee
Q 007111 234 KGEWSVAI 241 (617)
Q Consensus 234 ~~~W~~l~ 241 (617)
+.|..+.
T Consensus 592 -nswe~Vg 598 (603)
T COG4880 592 -NSWEVVG 598 (603)
T ss_pred -chHhhhh
Confidence 5677653
No 395
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=47.40 E-value=82 Score=34.40 Aligned_cols=19 Identities=5% Similarity=0.073 Sum_probs=10.0
Q ss_pred hhhHhHHHHhhcHHHHhhh
Q 007111 484 ILEGQLAAALVNREAAEKN 502 (617)
Q Consensus 484 ~~~~q~~~~~~~~~~~~~~ 502 (617)
.++.+++.|.+.++.|+++
T Consensus 124 ~~~a~l~~a~a~l~~a~~~ 142 (390)
T PRK15136 124 QYQANIELQKTALAQAQSD 142 (390)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554
No 396
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=47.06 E-value=60 Score=27.66 Aligned_cols=49 Identities=35% Similarity=0.374 Sum_probs=30.5
Q ss_pred HHhchhhHhHHHHhhcHHHHhhhhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007111 480 RKNGILEGQLAAALVNREAAEKNFSSV---LKSRQEMEKKLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 480 ~~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~lkek~~~~e 535 (617)
.+-..+|..++.-...+|++|++|-+. -+.|+.|| +|+..||+++...|
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE-------~E~~~l~~~l~~~E 56 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLE-------KELNELKEKLENNE 56 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHH-------HHHHHHHHHhhccH
Confidence 344556777777777778888876665 34577777 45555555554444
No 397
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=47.01 E-value=1.3e+02 Score=28.39 Aligned_cols=29 Identities=7% Similarity=0.077 Sum_probs=18.5
Q ss_pred HHHHHhchhhHhHHHHhhcHHHHhhhhhh
Q 007111 477 ALIRKNGILEGQLAAALVNREAAEKNFSS 505 (617)
Q Consensus 477 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~ 505 (617)
-+=.|.....+.|++|-..+++|++.+..
T Consensus 33 ~l~~R~~~I~~~l~~A~~~~~eA~~~~~e 61 (159)
T PRK13461 33 VIDSRQSEIDNKIEKADEDQKKARELKLK 61 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666677777777777777665443
No 398
>PRK00736 hypothetical protein; Provisional
Probab=46.92 E-value=41 Score=27.28 Aligned_cols=33 Identities=27% Similarity=0.325 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhhc
Q 007111 560 AFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLEN 606 (617)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (617)
.-|+.|+-.-||++. .|+-.|..|.+||.+++.
T Consensus 22 e~Ln~~v~~Qq~~i~--------------~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00736 22 EELSDQLAEQWKTVE--------------QMRKKLDALTERFLSLEE 54 (68)
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhcc
Confidence 335555555566553 355678889999999883
No 399
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=46.77 E-value=4.1e+02 Score=28.76 Aligned_cols=183 Identities=11% Similarity=0.158 Sum_probs=88.4
Q ss_pred ceEEEEECCCCcE-EEccccccCCCCCCCCCCCcccceEEEEE---CCEEEEEcccCCCCCCceEEEEEECCCCcEEEee
Q 007111 14 DDVQVLNFDRFSW-TAASSKLYLSPSSLPLKIPACRGHSLISW---GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVE 89 (617)
Q Consensus 14 ~~v~~yd~~t~~W-~~l~~~~~~~p~~~~~~~p~r~~hs~v~~---g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 89 (617)
+.+.++|..+.+= ..+... .. -|....+ +.++|+.+. + ..+.++|+.+.+- +.
T Consensus 16 ~~v~viD~~t~~~~~~i~~~-------------~~-~h~~~~~s~Dgr~~yv~~r-d------g~vsviD~~~~~~--v~ 72 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTG-------------GA-PHAGLKFSPDGRYLYVANR-D------GTVSVIDLATGKV--VA 72 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-S-------------TT-EEEEEE-TT-SSEEEEEET-T------SEEEEEETTSSSE--EE
T ss_pred CEEEEEECCCCeEEEEEcCC-------------CC-ceeEEEecCCCCEEEEEcC-C------CeEEEEECCcccE--EE
Confidence 5788999888763 333321 11 1444333 467999853 1 2689999999872 22
Q ss_pred ccCCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCCcEE-EeecCCCC----CCCCcccEEEEECCcEEE
Q 007111 90 AKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWL-PLHCTGTG----PSPRSNHVAALYDDKNLL 163 (617)
Q Consensus 90 ~~g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~-~l~~~g~~----P~~R~~h~a~~~~~~~Ly 163 (617)
.++.......++. .++++++.+.+. .+.+.++|..+.+=. .++. +.+ +.+|........... .|
T Consensus 73 ---~i~~G~~~~~i~~s~DG~~~~v~n~~-----~~~v~v~D~~tle~v~~I~~-~~~~~~~~~~Rv~aIv~s~~~~-~f 142 (369)
T PF02239_consen 73 ---TIKVGGNPRGIAVSPDGKYVYVANYE-----PGTVSVIDAETLEPVKTIPT-GGMPVDGPESRVAAIVASPGRP-EF 142 (369)
T ss_dssp ---EEE-SSEEEEEEE--TTTEEEEEEEE-----TTEEEEEETTT--EEEEEE---EE-TTTS---EEEEEE-SSSS-EE
T ss_pred ---EEecCCCcceEEEcCCCCEEEEEecC-----CCceeEeccccccceeeccc-ccccccccCCCceeEEecCCCC-EE
Confidence 1233344444433 355544555443 356899998887633 3321 222 334432222222344 45
Q ss_pred EEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC-CEEEEEecCCCCCccceEEEEECCCCcEEEe
Q 007111 164 IFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCG-TKWYIAGGGSRKKRHAETLIFDILKGEWSVA 240 (617)
Q Consensus 164 V~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~-~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l 240 (617)
|+--.+ ...++..|.....=..... ...++.-|-+.... ++.|+++ ... .+.+-++|..+..-...
T Consensus 143 Vv~lkd----~~~I~vVdy~d~~~~~~~~---i~~g~~~~D~~~dpdgry~~va-~~~---sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 143 VVNLKD----TGEIWVVDYSDPKNLKVTT---IKVGRFPHDGGFDPDGRYFLVA-ANG---SNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp EEEETT----TTEEEEEETTTSSCEEEEE---EE--TTEEEEEE-TTSSEEEEE-EGG---GTEEEEEETTTTEEEEE
T ss_pred EEEEcc----CCeEEEEEeccccccceee---ecccccccccccCcccceeeec-ccc---cceeEEEeeccceEEEE
Confidence 553333 2468888875532111111 13455556655553 3444443 221 24788899888765443
No 400
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=46.56 E-value=2.7e+02 Score=27.39 Aligned_cols=68 Identities=9% Similarity=0.127 Sum_probs=41.4
Q ss_pred cceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEEC-C-EEEEEcccCCCCCCceEEEEEECCCCcEEEee
Q 007111 13 LDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWG-K-KVLLVGGKTDSGSDRVSVWTFDTETECWSVVE 89 (617)
Q Consensus 13 ~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g-~-~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 89 (617)
..++|++|...+.|..+..... + -...|. -+..++ . -++++|...+.-+.-..+|.|++.++.-..+-
T Consensus 87 iGkIYIkn~~~~~~~~L~i~~~--~----~k~sPK---~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly 156 (200)
T PF15525_consen 87 IGKIYIKNLNNNNWWSLQIDQN--E----EKYSPK---YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELY 156 (200)
T ss_pred ceeEEEEecCCCceEEEEecCc--c----cccCCc---eeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEee
Confidence 5689999999999976643111 1 012222 133443 3 45666633332233347999999999988886
No 401
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=46.53 E-value=91 Score=36.41 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=19.5
Q ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHH
Q 007111 499 AEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQE 539 (617)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe 539 (617)
++..|+..++-++.+..+..-...|.+-+|..|+.++++.|
T Consensus 200 vdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~ 240 (916)
T KOG0249|consen 200 VDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKD 240 (916)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555554444444444444445555555544443
No 402
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=46.50 E-value=86 Score=37.34 Aligned_cols=21 Identities=5% Similarity=-0.069 Sum_probs=10.1
Q ss_pred hhhHHHHHHHHHHHHHhhhhh
Q 007111 556 EHDVAFLKAVLDDTQKELHST 576 (617)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~ 576 (617)
+++++.+++-.+.+++.|...
T Consensus 344 ~~~~~~a~~~~~~L~~~l~~~ 364 (754)
T TIGR01005 344 LMQADAAQARESQLVSDVNQL 364 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555444444444443
No 403
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=46.22 E-value=46 Score=35.47 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhchhhHhHHHH
Q 007111 471 YESKMAALIRKNGILEGQLAAA 492 (617)
Q Consensus 471 ~~~~~~~~~~~~~~~~~q~~~~ 492 (617)
.-.|+..+..+++.|+.+|.+.
T Consensus 5 ~~~kl~~~~~r~~el~~~L~~p 26 (363)
T COG0216 5 LLEKLESLLERYEELEALLSDP 26 (363)
T ss_pred HHHHHHHHHHHHHHHHHHhcCc
Confidence 3456777777777777777665
No 404
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=46.21 E-value=8.3 Score=45.71 Aligned_cols=129 Identities=23% Similarity=0.264 Sum_probs=12.0
Q ss_pred HHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHH-------------hhhc
Q 007111 477 ALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQE-------------EANS 543 (617)
Q Consensus 477 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe-------------~~~~ 543 (617)
.+-..+..|+..++.++...+.++..+...-+-+..||++++...||.+.||.-|...+...- +..+
T Consensus 368 ~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~~~~~~~ 447 (722)
T PF05557_consen 368 ELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQRIKEIED 447 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHHHhhHHH
Confidence 333344455555555555555555555444445667888888888888888887777542211 1222
Q ss_pred ccccccCCCcchh-------hhHHHHHHHHHHHHHhhhhhccchhhhcc--------------ccccchhhHHHHHHHHh
Q 007111 544 LSNIVHSDNVRLE-------HDVAFLKAVLDDTQKELHSTRGVLAGERA--------------RAFQLQVEVFHLKQRLQ 602 (617)
Q Consensus 544 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~ 602 (617)
|-+.++.....+| .++.-.|...+...+|+.+.+..+..+.. +.=.|+.|+..|.+++.
T Consensus 448 l~~~~~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~ 527 (722)
T PF05557_consen 448 LEQLVDEYKAELEAQLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELE 527 (722)
T ss_dssp ----------------------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444333333 33444444444445556655555554433 22334455666666666
Q ss_pred hhh
Q 007111 603 SLE 605 (617)
Q Consensus 603 ~~~ 605 (617)
.+|
T Consensus 528 ~Le 530 (722)
T PF05557_consen 528 ELE 530 (722)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 405
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=46.17 E-value=87 Score=32.35 Aligned_cols=51 Identities=24% Similarity=0.242 Sum_probs=26.2
Q ss_pred HHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 007111 478 LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLK 528 (617)
Q Consensus 478 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk 528 (617)
++++...||+||+-....+-|-.=.|-+.--.-|+-+.|.++-..|...||
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~Lk 66 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALK 66 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 556666777777776655554444444433334444444444333433333
No 406
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=46.10 E-value=95 Score=31.13 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=39.5
Q ss_pred chHHHHH---HHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007111 465 SSIYQFY---ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 465 ~~~~~~~---~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e 535 (617)
++|-.+| +.|++.++.+++.|-..|....+..|+....|-++-...-.||.++....-|+..||.+...+|
T Consensus 131 ~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 131 MDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 4554333 3456666666666655555555555555555555444444555555555556666666665543
No 407
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=45.90 E-value=3.5e+02 Score=27.75 Aligned_cols=92 Identities=26% Similarity=0.364 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcc--cccccCCC--cchhh---hHHHHHHHHHHHHHhhhhhccchhhhc
Q 007111 512 EMEKKLADSLKEMELLKEKLAGLELAQEEANSL--SNIVHSDN--VRLEH---DVAFLKAVLDDTQKELHSTRGVLAGER 584 (617)
Q Consensus 512 ~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~--~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (617)
.||..|+.+-.-.|.|++-+-.+|.|-.+..-- .-|+..+. -||.| -.|||..-|++-|-=|-|...
T Consensus 95 ~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqR------ 168 (333)
T KOG1853|consen 95 QLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQR------ 168 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH------
Confidence 455555555555566777777766654222110 01111111 13332 378999888887765544332
Q ss_pred cccccchhhHHHHHHHHhhhhccCCCCCCC
Q 007111 585 ARAFQLQVEVFHLKQRLQSLENRAPTPRKP 614 (617)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (617)
|--|.-+|+|.|+--+...--||+|
T Consensus 169 -----LkdEardlrqelavr~kq~E~pR~~ 193 (333)
T KOG1853|consen 169 -----LKDEARDLRQELAVRTKQTERPRIV 193 (333)
T ss_pred -----HHHHHHHHHHHHHHHHhhccCCCcC
Confidence 2245566777777655555567765
No 408
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=45.58 E-value=2.1e+02 Score=28.98 Aligned_cols=69 Identities=17% Similarity=0.277 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHhc----hhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007111 467 IYQFYESKMAALIRKNG----ILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 467 ~~~~~~~~~~~~~~~~~----~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e 535 (617)
+...+...+..++.+.+ +|++-+.++...+-+|.+.++.++-....+|+++......++.+.++.--+-
T Consensus 7 ~~~~~~a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al 79 (225)
T COG1842 7 LKDLVKANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELAL 79 (225)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666665544 6777777888888889999999999999999999999999998888765543
No 409
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=45.54 E-value=1.4e+02 Score=34.79 Aligned_cols=80 Identities=38% Similarity=0.429 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhchh-------hHhHHHHhhcHHHHhhhhhhh-h-h-----hHHHH-----HHHHHHHHHHHHHHHHH
Q 007111 470 FYESKMAALIRKNGIL-------EGQLAAALVNREAAEKNFSSV-L-K-----SRQEM-----EKKLADSLKEMELLKEK 530 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~-------~~q~~~~~~~~~~~~~~~~~~-~-~-----~~~~~-----~~~~~~~~~~~~~lkek 530 (617)
..|+|+++++++-.+| ...|+++|-.-|-|||+-... | . |++++ =|||-...||.|-|-+|
T Consensus 413 ~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K 492 (961)
T KOG4673|consen 413 TLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEK 492 (961)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 6788888887776665 455777777767788865442 1 1 22222 25666667777666655
Q ss_pred Hh-hhHHhHHhhhccccccc
Q 007111 531 LA-GLELAQEEANSLSNIVH 549 (617)
Q Consensus 531 ~~-~~e~~qe~~~~~~~~~~ 549 (617)
.. -.-+-|+|.|.|..|..
T Consensus 493 ~ge~i~~L~sE~~~lk~il~ 512 (961)
T KOG4673|consen 493 KGELITKLQSEENKLKSILR 512 (961)
T ss_pred hhhHHHHHHHHHHHHHHHhh
Confidence 55 44455666666665543
No 410
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=45.38 E-value=5.1e+02 Score=29.46 Aligned_cols=197 Identities=15% Similarity=0.145 Sum_probs=92.1
Q ss_pred ECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCC----CCCcceeEEEEEC-------CEEEEEeecCCCCCcc
Q 007111 55 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDI----PVARSGHTVVRAS-------SVLILFGGEDGKRRKL 123 (617)
Q Consensus 55 ~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~----P~~R~~~s~~~~~-------~~IYv~GG~~~~~~~~ 123 (617)
.++.|+|+-|.. ..-+||-....|..+. .|+. ....-+|.+.... ...|+-.+.++.
T Consensus 225 Tg~~iLvvsg~a-------qakl~DRdG~~~~e~~-KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgt---- 292 (641)
T KOG0772|consen 225 TGDQILVVSGSA-------QAKLLDRDGFEIVEFS-KGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGT---- 292 (641)
T ss_pred CCCeEEEEecCc-------ceeEEccCCceeeeee-ccchhhhhhhccCCceeeeeccccccCcccceEEecCCCc----
Confidence 377888887752 3566777677776553 2221 1122344443321 245665554443
Q ss_pred CeEEEEECCCCc--EEEeecCCCCCCCCcccEEEEEC-CcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecC--CCCCC
Q 007111 124 NDLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR--GFHPS 198 (617)
Q Consensus 124 ~~v~~yD~~t~~--W~~l~~~g~~P~~R~~h~a~~~~-~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~--g~~P~ 198 (617)
+.++|....+ -..+.+. .+-..|...+.|.++ +..+ |.+|+..+ +|..|+. ..|..-+.+ .+...
T Consensus 293 --lRiWdv~~~k~q~qVik~k-~~~g~Rv~~tsC~~nrdg~~-iAagc~DG----SIQ~W~~--~~~~v~p~~~vk~AH~ 362 (641)
T KOG0772|consen 293 --LRIWDVNNTKSQLQVIKTK-PAGGKRVPVTSCAWNRDGKL-IAAGCLDG----SIQIWDK--GSRTVRPVMKVKDAHL 362 (641)
T ss_pred --EEEEecCCchhheeEEeec-cCCCcccCceeeecCCCcch-hhhcccCC----ceeeeec--CCcccccceEeeeccC
Confidence 4455544322 2222221 233456666677764 3324 77777544 3666664 344432221 11122
Q ss_pred CCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCC-----CcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEc
Q 007111 199 PRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILK-----GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFG 271 (617)
Q Consensus 199 ~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~-----~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~G 271 (617)
+...-+++.+ ++++++-=|..+. +-++|+.. ..|+.++. ..+.....|| . +.+|++.|
T Consensus 363 ~g~~Itsi~FS~dg~~LlSRg~D~t-----LKvWDLrq~kkpL~~~tgL~t---~~~~tdc~FS-----P--d~kli~TG 427 (641)
T KOG0772|consen 363 PGQDITSISFSYDGNYLLSRGFDDT-----LKVWDLRQFKKPLNVRTGLPT---PFPGTDCCFS-----P--DDKLILTG 427 (641)
T ss_pred CCCceeEEEeccccchhhhccCCCc-----eeeeeccccccchhhhcCCCc---cCCCCccccC-----C--CceEEEec
Confidence 3223333433 5666665555433 44555543 45666542 1122222222 1 35677777
Q ss_pred CCC--CCCCCeEEEEECCC
Q 007111 272 GIK--KEPSNQVEVLSIEK 288 (617)
Q Consensus 272 G~~--~~~~~dV~vyd~~~ 288 (617)
-.- +.....++.||..+
T Consensus 428 tS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 428 TSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred ccccCCCCCceEEEEeccc
Confidence 652 22234455665544
No 411
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=45.31 E-value=1.3e+02 Score=28.13 Aligned_cols=46 Identities=20% Similarity=0.271 Sum_probs=26.3
Q ss_pred HhhhhhhhhhhHHHHHHHHHHHHHH-------HHHHHHHHhhhHHhHHhhhcc
Q 007111 499 AEKNFSSVLKSRQEMEKKLADSLKE-------MELLKEKLAGLELAQEEANSL 544 (617)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~lkek~~~~e~~qe~~~~~ 544 (617)
.+-.++.++..++.++..|..+.+| .+..++||..+|..+.+.-++
T Consensus 57 L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~ 109 (140)
T PF10473_consen 57 LEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENL 109 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3334555566666666665544333 344677788887666554443
No 412
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=45.27 E-value=64 Score=34.42 Aligned_cols=88 Identities=24% Similarity=0.352 Sum_probs=48.3
Q ss_pred hHhHHHHhhcHHHHhhhhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCC---Ccc--hhhh
Q 007111 486 EGQLAAALVNREAAEKNFSSV--LKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSD---NVR--LEHD 558 (617)
Q Consensus 486 ~~q~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~---~~~--~~~~ 558 (617)
-.+|+..+..-++.++.|+.. +.+..++ +++..-..+.+.+-++....+.++++...+..|.... .++ .+.|
T Consensus 6 ~~kl~~~~~r~~el~~~L~~p~v~~d~~~~-~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~~D~em~ema~~E 84 (363)
T COG0216 6 LEKLESLLERYEELEALLSDPEVISDPDEY-RKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEE 84 (363)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccccCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 345555555566666655543 2222222 2233333344455555556666666666655555532 222 4567
Q ss_pred HHHHHHHHHHHHHhhh
Q 007111 559 VAFLKAVLDDTQKELH 574 (617)
Q Consensus 559 ~~~~~~~~~~~~~~~~ 574 (617)
++.|++-++++.+||.
T Consensus 85 i~~~~~~~~~le~~L~ 100 (363)
T COG0216 85 IKELEAKIEELEEELK 100 (363)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888888764
No 413
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=45.09 E-value=1.4e+02 Score=33.18 Aligned_cols=34 Identities=15% Similarity=0.021 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhh
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKNF 503 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~ 503 (617)
.++.+++.+-.....++.++......++..++.+
T Consensus 169 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 202 (457)
T TIGR01000 169 AAEKTKAQLDQQISKTDQKLQDYQALKNAISNGT 202 (457)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4555555555556666666666666666555553
No 414
>PLN03188 kinesin-12 family protein; Provisional
Probab=45.00 E-value=1.2e+02 Score=37.92 Aligned_cols=115 Identities=28% Similarity=0.343 Sum_probs=68.1
Q ss_pred chHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhh----------------------------hhhhhhhhHHHHHHH
Q 007111 465 SSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEK----------------------------NFSSVLKSRQEMEKK 516 (617)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~ 516 (617)
.|+-..-++-++-.||+-.+||.+-..--+..+|.-. -.--+|-+.+=|+..
T Consensus 862 ~~v~k~~~kvl~~a~~re~~le~~c~~qa~~i~ql~~lv~qyk~e~~~~~~~~~~~~~ki~~l~~~~dg~l~~~~~~~~~ 941 (1320)
T PLN03188 862 KQVPKAVEKVLAGAIRREMALEEFCTKQASEITQLNRLVQQYKHERECNAIIGQTREDKIIRLESLMDGVLSKEDFLEEE 941 (1320)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhhhHHHHhhhcccccchhhhhhhh
Confidence 4555567777888888888887766554444444111 111233444456666
Q ss_pred HHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhhhccch-hhhccccccchhhHH
Q 007111 517 LADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVL-AGERARAFQLQVEVF 595 (617)
Q Consensus 517 ~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 595 (617)
++..+.|-.+||||-. -|++=+|-+-| |...|.||..-|.-. -+||- -||-|+.
T Consensus 942 ~~~~~~~~~~~~~~y~---------------~~p~~~~~~~e-------~~~~~~e~~~~~~~~d~~ErE---vll~eI~ 996 (1320)
T PLN03188 942 LASLMHEHKLLKEKYE---------------NHPEVLRTKIE-------LKRVQDELEHYRNFYDMGERE---VLLEEIQ 996 (1320)
T ss_pred hhhhhhhHHHHHHHhh---------------cChhhhhhhHH-------HHHHHHHHHHHHhhccchhHH---HHHHHHH
Confidence 6666667777777654 35554554444 334556665544433 13332 2678999
Q ss_pred HHHHHHhhh
Q 007111 596 HLKQRLQSL 604 (617)
Q Consensus 596 ~~~~~~~~~ 604 (617)
+||-+||.|
T Consensus 997 dlr~qL~~~ 1005 (1320)
T PLN03188 997 DLRSQLQYY 1005 (1320)
T ss_pred HHHHHHHhh
Confidence 999999988
No 415
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=44.98 E-value=40 Score=39.36 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=22.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007111 502 NFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e 535 (617)
++..+.+..++++.+|.....+.|.|-|+++.++
T Consensus 599 ~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~ 632 (638)
T PRK10636 599 ELTACLQQQASAKSGLEECEMAWLEAQEQLEQML 632 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556666777777777777777777665555
No 416
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=44.83 E-value=2.2e+02 Score=27.45 Aligned_cols=67 Identities=22% Similarity=0.311 Sum_probs=42.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCc-chhhhHHHHHHHHHHHHHhh
Q 007111 502 NFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNV-RLEHDVAFLKAVLDDTQKEL 573 (617)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 573 (617)
...-+++.+-.+ .|+.+.+|++.|+-|+..+ |++.|+=+.-+-..++ .|+.|++-++---++..+||
T Consensus 94 ~FI~sf~~Y~~l--eL~s~~~ei~~L~~kI~~L---~~~in~~~k~~~n~~i~slk~EL~d~iKe~e~~emeL 161 (181)
T PF04645_consen 94 SFIDSFNQYKNL--ELKSIKKEIEILRLKISSL---QKEINKNKKKDLNEEIESLKSELNDLIKEREIREMEL 161 (181)
T ss_pred HHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHH---HHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345555444 5889999999999999876 4666654444444442 56666666666666666655
No 417
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=44.50 E-value=2e+02 Score=26.58 Aligned_cols=96 Identities=19% Similarity=0.254 Sum_probs=54.0
Q ss_pred HHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhh
Q 007111 478 LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEH 557 (617)
Q Consensus 478 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~ 557 (617)
+=.|.....+.|++|-..+++|+. -+++.+..|+++-.|.+.++++. .+.|++|+..
T Consensus 36 l~~R~~~I~~~l~~A~~~~~ea~~-------~~~e~e~~l~~Ar~eA~~~~~~a--~~~A~~ea~~-------------- 92 (141)
T PRK08476 36 MDNRNASIKNDLEKVKTNSSDVSE-------IEHEIETILKNAREEANKIRQKA--IAKAKEEAEK-------------- 92 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH--------------
Confidence 444555566666666666666553 35666677777777766665544 3444444322
Q ss_pred hHHHHHHHHHHHHHhhhhhccchhhhcccc-ccchhhHHHHHH
Q 007111 558 DVAFLKAVLDDTQKELHSTRGVLAGERARA-FQLQVEVFHLKQ 599 (617)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 599 (617)
-++..-++.+.++...+.-|..|+..+ -.|+-+|..|..
T Consensus 93 ---~~~~A~~~~~~~~~~a~~~l~~e~~~~~~~l~~qv~~~~~ 132 (141)
T PRK08476 93 ---KIEAKKAELESKYEAFAKQLANQKQELKEQLLSQMPEFKE 132 (141)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 234445556666666666666666654 234445544443
No 418
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=44.38 E-value=1.2e+02 Score=29.30 Aligned_cols=62 Identities=24% Similarity=0.295 Sum_probs=41.0
Q ss_pred HHHHHHHhchhhHhHHH---HhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 007111 475 MAALIRKNGILEGQLAA---ALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELA 537 (617)
Q Consensus 475 ~~~~~~~~~~~~~q~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~ 537 (617)
.+.|--++.+|+.|+.+ --..-|+-=|.|+++| +.++|.++.+...+|+...+|+|.....+
T Consensus 81 l~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L-t~eemQe~i~~L~kev~~~~erl~~~k~g 145 (201)
T KOG4603|consen 81 LQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL-TTEEMQEEIQELKKEVAGYRERLKNIKAG 145 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444332 2334455557888888 88999999999999998888888777544
No 419
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=44.25 E-value=25 Score=37.74 Aligned_cols=18 Identities=50% Similarity=0.639 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHhhhhccC
Q 007111 591 QVEVFHLKQRLQSLENRA 608 (617)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~ 608 (617)
|-|+-.|||-|-+||.|.
T Consensus 323 QnEi~nLKqElasmeerv 340 (455)
T KOG3850|consen 323 QNEIANLKQELASMEERV 340 (455)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 479999999999999764
No 420
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=44.25 E-value=2.3e+02 Score=32.75 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=38.5
Q ss_pred HHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007111 474 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEK 530 (617)
Q Consensus 474 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek 530 (617)
++..+-.+-..|-.+|..-...+..++|+...+.+...++++....+..|++.|++.
T Consensus 283 ~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 283 KNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333444444555555666666677778888888888888888777777777776666
No 421
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=44.09 E-value=1.7e+02 Score=33.02 Aligned_cols=18 Identities=39% Similarity=0.379 Sum_probs=7.9
Q ss_pred HHHHHHHHHhhhHHhHHh
Q 007111 523 EMELLKEKLAGLELAQEE 540 (617)
Q Consensus 523 ~~~~lkek~~~~e~~qe~ 540 (617)
|.|+|++-|....-||++
T Consensus 255 Ekeel~~~Lq~~~da~~q 272 (596)
T KOG4360|consen 255 EKEELDEHLQAYKDAQRQ 272 (596)
T ss_pred HHHHHHHHHHHHHhhHHH
Confidence 334444444444444443
No 422
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=44.04 E-value=2.4e+02 Score=27.86 Aligned_cols=94 Identities=30% Similarity=0.325 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhh--------------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007111 468 YQFYESKMAALIRKNGILEGQLAAALVNREAAEK--------------NFSSVLKSRQEMEKKLADSLKEMELLKEKLAG 533 (617)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~ 533 (617)
-+.=+.|---..|+-.+.|++|.-+-..-|++|. ||-++-.+-+.++.++....+++-.|-+||-.
T Consensus 76 aE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkE 155 (205)
T KOG1003|consen 76 AEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKE 155 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 3444556666788888889998888887777775 23333334444444444444455555555555
Q ss_pred hHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhh
Q 007111 534 LELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHS 575 (617)
Q Consensus 534 ~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (617)
+|.- ++ -.|+=|+-|---.||.+..|-.
T Consensus 156 aE~r------------AE--~aERsVakLeke~DdlE~kl~~ 183 (205)
T KOG1003|consen 156 AETR------------AE--FAERRVAKLEKERDDLEEKLEE 183 (205)
T ss_pred hhhh------------HH--HHHHHHHHHcccHHHHHHhhHH
Confidence 5522 11 1346677776667777665543
No 423
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=44.01 E-value=2.2e+02 Score=27.48 Aligned_cols=60 Identities=15% Similarity=0.188 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e 535 (617)
+....++.++-++...++.++.......... .+-++..+.++.....+.+.+.+.+..+.
T Consensus 91 ~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 91 QQLQEELDQLQERIQELESELEKLKEDLQEL-------RELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433333333 34444445555554444444444444444
No 424
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=44.00 E-value=86 Score=35.58 Aligned_cols=83 Identities=25% Similarity=0.313 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH-HHHHHhhhHHhHHhhhc--cc
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMEL-LKEKLAGLELAQEEANS--LS 545 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lkek~~~~e~~qe~~~~--~~ 545 (617)
|+.++|-|.-|-+|. |-.|++...-.++-.... +.++++.+.||.+.++|.|+ ||.--+.++.|..++|- -+
T Consensus 312 qLLetKNALNiVKND-LIakVDeL~~E~~vLrgE----lea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~d 386 (832)
T KOG2077|consen 312 QLLETKNALNIVKND-LIAKVDELTCEKDVLRGE----LEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDD 386 (832)
T ss_pred HHHhhhhHHHHHHHH-HHHHHHhhccHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 788888877776664 557888777776665555 67888889999988888765 77766777777555443 34
Q ss_pred ccccCCCcchh
Q 007111 546 NIVHSDNVRLE 556 (617)
Q Consensus 546 ~~~~~~~~~~~ 556 (617)
-|+-+--.|.-
T Consensus 387 diPmAqRkRFT 397 (832)
T KOG2077|consen 387 DIPMAQRKRFT 397 (832)
T ss_pred cccHHHHhhhH
Confidence 45555555554
No 425
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=43.96 E-value=1e+02 Score=39.98 Aligned_cols=93 Identities=20% Similarity=0.342 Sum_probs=74.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhccc
Q 007111 507 LKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERAR 586 (617)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (617)
...|+.++.++.+...++..||.|+. ++.+. +|.-+--++.++.-..-.++++.+++.++---|+-=|++
T Consensus 797 ~~~k~~~e~~i~eL~~el~~lk~klq------~~~~~----~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~ 866 (1822)
T KOG4674|consen 797 MATKDKCESRIKELERELQKLKKKLQ------EKSSD----LRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTN 866 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH----HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888888843 33332 455555667778888888999999999999999999999
Q ss_pred cccchhhHHHHHHHHhhhhccCC
Q 007111 587 AFQLQVEVFHLKQRLQSLENRAP 609 (617)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~ 609 (617)
.=+|+.+|-.|..+|.+++-|..
T Consensus 867 ~~~le~k~~eL~k~l~~~~~~~~ 889 (1822)
T KOG4674|consen 867 IAKLEIKLSELEKRLKSAKTQLL 889 (1822)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHh
Confidence 99999999999999999986654
No 426
>PTZ00420 coronin; Provisional
Probab=43.91 E-value=5.7e+02 Score=29.60 Aligned_cols=111 Identities=11% Similarity=0.014 Sum_probs=54.1
Q ss_pred CcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcE
Q 007111 159 DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEW 237 (617)
Q Consensus 159 ~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W 237 (617)
+..+++.||.++ .+.+||+.++.-...... + ..-.++... ++.+++.++.. ..+.+||+.+..-
T Consensus 137 g~~iLaSgS~Dg-----tIrIWDl~tg~~~~~i~~---~--~~V~SlswspdG~lLat~s~D-----~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 137 NYYIMCSSGFDS-----FVNIWDIENEKRAFQINM---P--KKLSSLKWNIKGNLLSGTCVG-----KHMHIIDPRKQEI 201 (568)
T ss_pred CCeEEEEEeCCC-----eEEEEECCCCcEEEEEec---C--CcEEEEEECCCCCEEEEEecC-----CEEEEEECCCCcE
Confidence 344566777764 488999987652211111 1 112233332 56777666543 3488999987642
Q ss_pred EEeecCCCCCCCCCcceEEEEE-eecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 238 SVAITSPSSSVTSNKGFTLVLV-QHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 238 ~~l~~~~~~~p~~r~~~s~v~v-~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
...- .. .........+.. ....++..++.+|.++.....|.+||+..
T Consensus 202 i~tl--~g--H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 202 ASSF--HI--HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred EEEE--ec--ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 2111 10 001101111111 11123345666666544344689999874
No 427
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=43.83 E-value=45 Score=29.31 Aligned_cols=54 Identities=30% Similarity=0.360 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHH
Q 007111 511 QEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQK 571 (617)
Q Consensus 511 ~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (617)
+++.+.+++.-++...++.|+..++..-.|...+= -.|...|+-||.|+.....
T Consensus 33 eEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l-------~~lq~qL~~LK~v~~~~~~ 86 (100)
T PF06428_consen 33 EEANKMVADARRERAALEEKNEQLEKQLKEKEALL-------ESLQAQLKELKTVMESMES 86 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCC-------CHCTSSSSHHHHCTTT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHccc
Confidence 66777777777777778888777776655544321 1344567778887766443
No 428
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=43.72 E-value=1e+02 Score=32.40 Aligned_cols=18 Identities=22% Similarity=0.075 Sum_probs=8.7
Q ss_pred hhhHHHHHHHHHHHHHhh
Q 007111 556 EHDVAFLKAVLDDTQKEL 573 (617)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~ 573 (617)
+.+++.+++-++..+..|
T Consensus 185 ~~~i~~~~~~l~~a~~~l 202 (334)
T TIGR00998 185 QPAVQEAKERLKTAWLAL 202 (334)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 344555555555544444
No 429
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=43.67 E-value=53 Score=36.62 Aligned_cols=103 Identities=17% Similarity=0.135 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhch------------hhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH-HHHHHhhhHH
Q 007111 470 FYESKMAALIRKNGI------------LEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMEL-LKEKLAGLEL 536 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~------------~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lkek~~~~e~ 536 (617)
.|-..+++++..|-. -|+++..-+..+|..+|+-...++--.++.+|.++-+.++.. +|--....+.
T Consensus 58 syGesvKqAVilNVlG~~d~~pDPLsPgE~~l~~Kl~eLE~e~k~d~v~~khn~~I~~k~g~~L~~v~~~~~~~~~~~~~ 137 (508)
T PF00901_consen 58 SYGESVKQAVILNVLGTGDEPPDPLSPGEQGLQRKLKELEDEQKEDEVREKHNKKIIEKFGNDLEKVYKFMKGQEKVEEE 137 (508)
T ss_pred chHHHHHHHHHHHhccCCCCCCCCCCHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Confidence 455555665555532 367788888888888888777777777788888876666554 2322223333
Q ss_pred hHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHh
Q 007111 537 AQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKE 572 (617)
Q Consensus 537 ~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (617)
.++|..-|+.-+-+=..-+++|-.-|+-+-+-+|||
T Consensus 138 e~~q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~kE 173 (508)
T PF00901_consen 138 EENQIEILEKALKSYGKIVKEENKQLDRLARALQKE 173 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444555555555555555665
No 430
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=43.62 E-value=1.3e+02 Score=30.06 Aligned_cols=80 Identities=20% Similarity=0.187 Sum_probs=47.5
Q ss_pred HHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHH----HHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCc
Q 007111 478 LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEK----KLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNV 553 (617)
Q Consensus 478 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~ 553 (617)
.++-|..|++.+..+...+....+....|-+.|..... +|....+....+--|.-.+|.| +.
T Consensus 134 W~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a--------------~~ 199 (221)
T PF05700_consen 134 WLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVA--------------CE 199 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--------------HH
Confidence 45556667766666666666666666666555443333 3333333444455555555554 56
Q ss_pred chhhhHHHHHHHHHHHHH
Q 007111 554 RLEHDVAFLKAVLDDTQK 571 (617)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~ 571 (617)
.||.+|.-||+-..+.++
T Consensus 200 ~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 200 ELEQEIEQLKRKAAELKE 217 (221)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 788888888877666554
No 431
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=43.50 E-value=1.4e+02 Score=29.58 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=30.3
Q ss_pred HHHHhchhhHhHHHHhhcHHHHhhhhhhhh----hhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhc
Q 007111 478 LIRKNGILEGQLAAALVNREAAEKNFSSVL----KSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS 543 (617)
Q Consensus 478 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~ 543 (617)
+=.|....++.|+.|-..+++|++.+...= +.+++...-+.++.++.+.+++. .++.|++|+..
T Consensus 77 L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~--i~~~A~~eae~ 144 (205)
T PRK06231 77 LNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQLKSE--LEKEANRQANL 144 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 334555566666666666666665544332 22333333333333333333333 33455555543
No 432
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=43.42 E-value=1.1e+02 Score=36.70 Aligned_cols=68 Identities=24% Similarity=0.271 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELA 537 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~ 537 (617)
....++..+=.+.+.|..||+.+-.++..+|-.+--.-.+++.++.++.++..|++.|..|+..||..
T Consensus 621 ~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~E 688 (769)
T PF05911_consen 621 SLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEE 688 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444555666688888888888888888888888888888888888888999999998888755
No 433
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=43.33 E-value=37 Score=28.05 Aligned_cols=60 Identities=32% Similarity=0.392 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHH---HHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhh
Q 007111 512 EMEKKLADSLKEMELLK---EKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELH 574 (617)
Q Consensus 512 ~~~~~~~~~~~~~~~lk---ek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (617)
.|+++|++.+..+..|. |||+.-|+++..... -..+.|-.+|.+++-|+.-+++..+++-
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IK---KLr~~~~e~e~~~~~l~~~~~~~e~~~~ 64 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIK---KLRAKIKELEKQIKELKKKLEELEKELE 64 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777766666666 344444433222110 0122333444555555555555554443
No 434
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=43.28 E-value=1.9e+02 Score=23.83 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhchhhHhHH
Q 007111 469 QFYESKMAALIRKNGILEGQLA 490 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~ 490 (617)
.--+.||+++|-..+.|...++
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~e 28 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENE 28 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555544443
No 435
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=43.24 E-value=1.6e+02 Score=28.64 Aligned_cols=58 Identities=29% Similarity=0.319 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHhhhH
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQ-EMEKKLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lkek~~~~e 535 (617)
-.++.++..-++..+|-++...+-+++|. ++.|+ +++++|-...++.|.||.+|+..+
T Consensus 85 eLe~~L~~~~qk~~tl~e~~en~K~~~e~--------tEer~~el~kklnslkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 85 ELESQLATGSQKKATLGESIENRKAGREE--------TEERTDELTKKLNSLKKILESLRWELAKIQ 143 (203)
T ss_pred HHHHHHHHhhhhHhHHHHHHHHHHhhhhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444455555555555555555544 34455 677777666666777777776654
No 436
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=43.21 E-value=1.7e+02 Score=26.79 Aligned_cols=44 Identities=20% Similarity=0.204 Sum_probs=25.5
Q ss_pred HHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 007111 478 LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLK 528 (617)
Q Consensus 478 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk 528 (617)
+=.|.....++|++|-..+++|++. ..+.+.+|+++.++...++
T Consensus 34 l~~R~~~I~~~l~~Ae~~~~ea~~~-------~~~~e~~L~~a~~ea~~i~ 77 (140)
T PRK07353 34 VEEREDYIRTNRAEAKERLAEAEKL-------EAQYEQQLASARKQAQAVI 77 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 3345566667777777777777655 3445555555555544443
No 437
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.20 E-value=1.3e+02 Score=38.54 Aligned_cols=65 Identities=11% Similarity=0.084 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHh--hcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007111 470 FYESKMAALIRKNGILEGQLAAAL--VNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 534 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~ 534 (617)
.+..++..+-+.-..|+.++.... .+.++.++.+..+=+....+.+++.....+.+.+++++..+
T Consensus 796 r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 796 RFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555544444332 23344455444444444444444444444444444444433
No 438
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=42.85 E-value=4.7e+02 Score=28.32 Aligned_cols=197 Identities=17% Similarity=0.150 Sum_probs=88.3
Q ss_pred eEEEEEECCCCcE-EEeeccC---CCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCC
Q 007111 73 VSVWTFDTETECW-SVVEAKG---DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSP 148 (617)
Q Consensus 73 ~~v~~yd~~t~~W-~~~~~~g---~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~ 148 (617)
+.+.++|..+.+- ..+++.+ ..+.+|............|++--.+ ...+|..|.....-.... .+..+
T Consensus 100 ~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd-----~~~I~vVdy~d~~~~~~~---~i~~g 171 (369)
T PF02239_consen 100 GTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD-----TGEIWVVDYSDPKNLKVT---TIKVG 171 (369)
T ss_dssp TEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT-----TTEEEEEETTTSSCEEEE---EEE--
T ss_pred CceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc-----CCeEEEEEecccccccee---eeccc
Confidence 4788999887653 3343321 1133444333333455556654332 456899987664322211 23345
Q ss_pred CcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceE
Q 007111 149 RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAET 227 (617)
Q Consensus 149 R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v 227 (617)
++-|-+..-.++..|+.+-.. .+.+-.+|..++.-......+..|.+..+..+.-. .+-++..+|..... -..
T Consensus 172 ~~~~D~~~dpdgry~~va~~~----sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~--~~~ 245 (369)
T PF02239_consen 172 RFPHDGGFDPDGRYFLVAANG----SNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFA--IPL 245 (369)
T ss_dssp TTEEEEEE-TTSSEEEEEEGG----GTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSE--EEE
T ss_pred ccccccccCcccceeeecccc----cceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecccccee--ccc
Confidence 555665555443233333222 35789999988876655444444444433333222 23455555532110 011
Q ss_pred EEEEC----CCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 228 LIFDI----LKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 228 ~~yDl----~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.--|+ +...|+.+...+. ...+ ..+-.+.+..++|+-=-.+ ...+.|.++|.++.+
T Consensus 246 ig~~~v~v~d~~~wkvv~~I~~----~G~g--lFi~thP~s~~vwvd~~~~-~~~~~v~viD~~tl~ 305 (369)
T PF02239_consen 246 IGTDPVSVHDDYAWKVVKTIPT----QGGG--LFIKTHPDSRYVWVDTFLN-PDADTVQVIDKKTLK 305 (369)
T ss_dssp EE--TTT-STTTBTSEEEEEE-----SSSS----EE--TT-SEEEEE-TT--SSHT-EEEEECCGTE
T ss_pred ccCCccccchhhcCeEEEEEEC----CCCc--ceeecCCCCccEEeeccCC-CCCceEEEEECcCcc
Confidence 22222 2356777764332 2222 2333455667777641111 115689999998865
No 439
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=42.85 E-value=1.4e+02 Score=36.54 Aligned_cols=106 Identities=19% Similarity=0.259 Sum_probs=57.0
Q ss_pred HHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH----hHHhhhcccccccC
Q 007111 475 MAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLEL----AQEEANSLSNIVHS 550 (617)
Q Consensus 475 ~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~----~qe~~~~~~~~~~~ 550 (617)
+...-.+...|...+.....-.+.|..+++++=...+++.........|.+.+++-|-++.+ ++++.+..+|-+..
T Consensus 290 i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~ 369 (1074)
T KOG0250|consen 290 IKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRK 369 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555555555555565555555444444444444444555555555544443 45666666665543
Q ss_pred CCcchhhhHHHHHHHHHHHHHhhhhhccchhhhc
Q 007111 551 DNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGER 584 (617)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (617)
+-.++.+|+-.+.+.+|++|-+=|..-.||
T Consensus 370 ----~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~ 399 (1074)
T KOG0250|consen 370 ----LKKEVDRLEKQIADLEKQTNNELGSELEER 399 (1074)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 335677777777777777754444433333
No 440
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=42.80 E-value=4e+02 Score=27.54 Aligned_cols=195 Identities=17% Similarity=0.165 Sum_probs=94.9
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 135 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~ 135 (617)
+.+.+..+|+ ..+-.||+.++.=..+.+ ...+..-.-....-.+++-.+-||.++. +-++|...-.
T Consensus 51 dk~~LAaa~~-------qhvRlyD~~S~np~Pv~t-~e~h~kNVtaVgF~~dgrWMyTgseDgt------~kIWdlR~~~ 116 (311)
T KOG0315|consen 51 DKKDLAAAGN-------QHVRLYDLNSNNPNPVAT-FEGHTKNVTAVGFQCDGRWMYTGSEDGT------VKIWDLRSLS 116 (311)
T ss_pred CcchhhhccC-------CeeEEEEccCCCCCceeE-EeccCCceEEEEEeecCeEEEecCCCce------EEEEeccCcc
Confidence 3445555554 368899998876433331 0112122222233356788888887664 5567776633
Q ss_pred EEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEE
Q 007111 136 WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYI 214 (617)
Q Consensus 136 W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI 214 (617)
-.+.- ..+.+.. +.+...+..=+|.|-.++ .|+++|+.++.+..... ++.-.+. -++++. +++..+
T Consensus 117 ~qR~~---~~~spVn--~vvlhpnQteLis~dqsg-----~irvWDl~~~~c~~~li-Pe~~~~i--~sl~v~~dgsml~ 183 (311)
T KOG0315|consen 117 CQRNY---QHNSPVN--TVVLHPNQTELISGDQSG-----NIRVWDLGENSCTHELI-PEDDTSI--QSLTVMPDGSMLA 183 (311)
T ss_pred cchhc---cCCCCcc--eEEecCCcceEEeecCCC-----cEEEEEccCCccccccC-CCCCcce--eeEEEcCCCcEEE
Confidence 33221 1222221 333333332345555544 49999999998776544 2222222 233333 444444
Q ss_pred EecCCCCCccceEEEEECCCCcE-EEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 215 AGGGSRKKRHAETLIFDILKGEW-SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 215 ~GG~s~~~~~~~v~~yDl~~~~W-~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
. +.+.+ ..|++++.+..- +.+. |......+.+|..-..-..+ .+.++.-+.+. .|.+++.+..
T Consensus 184 a-~nnkG----~cyvW~l~~~~~~s~l~--P~~k~~ah~~~il~C~lSPd-~k~lat~ssdk----tv~iwn~~~~ 247 (311)
T KOG0315|consen 184 A-ANNKG----NCYVWRLLNHQTASELE--PVHKFQAHNGHILRCLLSPD-VKYLATCSSDK----TVKIWNTDDF 247 (311)
T ss_pred E-ecCCc----cEEEEEccCCCccccce--EhhheecccceEEEEEECCC-CcEEEeecCCc----eEEEEecCCc
Confidence 4 33322 366766655322 1111 22234466666665554444 33444444432 4555555443
No 441
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=42.50 E-value=86 Score=32.32 Aligned_cols=32 Identities=38% Similarity=0.411 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHhhhccccc
Q 007111 513 MEKKLADSLKEMELLKEKLAGLELAQEEANSLSNI 547 (617)
Q Consensus 513 ~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~ 547 (617)
++.+++....+++.|+-||. .+|||-+-|+.-
T Consensus 79 ~e~~l~~Lq~ql~~l~akI~---k~~~el~~L~TY 110 (258)
T PF15397_consen 79 EESKLSKLQQQLEQLDAKIQ---KTQEELNFLSTY 110 (258)
T ss_pred HHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 33444444444444544432 445555555543
No 442
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=42.46 E-value=35 Score=29.25 Aligned_cols=49 Identities=27% Similarity=0.221 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhh
Q 007111 510 RQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHD 558 (617)
Q Consensus 510 ~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~ 558 (617)
.++||+++....+-++.|.+-+...+.+|++...|.+--++.+-+-.+|
T Consensus 2 I~eme~~y~~~~~~l~~le~~l~~~~~~~~~~~~L~~YY~s~~w~~d~e 50 (90)
T PF14131_consen 2 IQEMEKIYNEWCELLEELEEALEKWQEAQPDYRKLRDYYGSEEWMEDYE 50 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHhHHHHHH
Confidence 4799999999999999999999999999999999999988888776655
No 443
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=42.18 E-value=71 Score=32.00 Aligned_cols=17 Identities=12% Similarity=0.126 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007111 510 RQEMEKKLADSLKEMEL 526 (617)
Q Consensus 510 ~~~~~~~~~~~~~~~~~ 526 (617)
...|+|+..+..+|+--
T Consensus 181 ~~al~Kq~e~~~~Eydr 197 (216)
T KOG1962|consen 181 VDALKKQSEGLQDEYDR 197 (216)
T ss_pred HHHHHHHHHHcccHHHH
Confidence 33444444444444433
No 444
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=42.15 E-value=29 Score=30.58 Aligned_cols=33 Identities=36% Similarity=0.495 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHH
Q 007111 520 SLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVL 566 (617)
Q Consensus 520 ~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (617)
.-+|+|-|||++..+|.- |-+||+|...||...
T Consensus 65 VREEVe~Lk~qI~eL~er--------------~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEER--------------NSALERENSLLKTLA 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhhC
Confidence 445788899998888632 557888888888654
No 445
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=42.10 E-value=1.4e+02 Score=33.77 Aligned_cols=72 Identities=15% Similarity=0.276 Sum_probs=38.0
Q ss_pred CCchH-HHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007111 463 GPSSI-YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 534 (617)
Q Consensus 463 ~~~~~-~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~ 534 (617)
+.+++ .-+|..+|..|.......+.....--+.=+..-+.|..+-+.|+.++..|..+...+..|++-|..-
T Consensus 409 sRE~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TT 481 (518)
T PF10212_consen 409 SREQLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETT 481 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34454 4788888888777666555444444444444444444444444444444444444444444444433
No 446
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=42.07 E-value=89 Score=39.99 Aligned_cols=50 Identities=12% Similarity=0.173 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHH
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLAD 519 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (617)
....++..+.++...++..++.+...++.++.++...-+..+.+++++..
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~ 322 (1353)
T TIGR02680 273 SAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEA 322 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555556666666666666655555554444555544443
No 447
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=41.95 E-value=1.5e+02 Score=30.09 Aligned_cols=38 Identities=34% Similarity=0.368 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHHHHHHHH-------HHHHHHHhhhHHhHHhhhcc
Q 007111 507 LKSRQEMEKKLADSLKEM-------ELLKEKLAGLELAQEEANSL 544 (617)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~-------~~lkek~~~~e~~qe~~~~~ 544 (617)
..=+.+++.||.+..|+. .=||.|||.+=..=-|-|.|
T Consensus 50 ~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eRn~L 94 (277)
T PF15030_consen 50 TRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRERNRL 94 (277)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHHHHH
Confidence 344556666666655533 33999998876554555553
No 448
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=41.79 E-value=47 Score=36.52 Aligned_cols=68 Identities=28% Similarity=0.277 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHH-hchhhHhHHHHhh------cHH---------HHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007111 468 YQFYESKMAALIRK-NGILEGQLAAALV------NRE---------AAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKL 531 (617)
Q Consensus 468 ~~~~~~~~~~~~~~-~~~~~~q~~~~~~------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~ 531 (617)
++.+.+||+++.-. ...+|.||--+.. ..| .||.=-....+-+.++|++.|.--+++|.-+|++
T Consensus 328 ~D~~sKkI~~l~~~p~~~~E~qLkk~Irl~a~~~lqEkiL~L~sLPt~e~~~~l~~krk~~te~d~a~e~r~a~~~~~rl 407 (505)
T KOG1842|consen 328 IDGTSKKIANLPSSPPSDAEEQLKKNIRLEAKQYLQEKILRLQSLPTAEECYHLQVKRKEETESDFAREGREAEKKKERL 407 (505)
T ss_pred HHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHhccccCCCchHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHhH
Confidence 46788888887766 6777777754432 111 1121122335566777777777777777777766
Q ss_pred hhhH
Q 007111 532 AGLE 535 (617)
Q Consensus 532 ~~~e 535 (617)
..++
T Consensus 408 ~q~q 411 (505)
T KOG1842|consen 408 SQLQ 411 (505)
T ss_pred HHHH
Confidence 5444
No 449
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=41.73 E-value=2e+02 Score=29.49 Aligned_cols=108 Identities=21% Similarity=0.253 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHH----HHHHHHHHHHHHHHHHHHHhh--hHHhHHhhh
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQE----MEKKLADSLKEMELLKEKLAG--LELAQEEAN 542 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~lkek~~~--~e~~qe~~~ 542 (617)
|+++.=-..+++.+......|..-..+--+.|+.|-+-|...+. ++........|+|-+|||... ++-+|-++
T Consensus 16 ~ywk~l~~~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s- 94 (333)
T KOG1853|consen 16 QYWKLLHHEYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQES- 94 (333)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 33333333355555555555555555555555555554422222 223333456688888888754 33344332
Q ss_pred cccccccCCCcchhhhHHHHHHHHHHHHH---hhhhhccch-hhhccccc
Q 007111 543 SLSNIVHSDNVRLEHDVAFLKAVLDDTQK---ELHSTRGVL-AGERARAF 588 (617)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~ 588 (617)
.||.|++-++|+-|..+| ||.-.--+| ..+|+.-+
T Consensus 95 -----------~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~ 133 (333)
T KOG1853|consen 95 -----------QLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIY 133 (333)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhh
Confidence 489999999999999887 555444444 23444443
No 450
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=41.68 E-value=86 Score=33.43 Aligned_cols=65 Identities=17% Similarity=0.174 Sum_probs=36.4
Q ss_pred HHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhH
Q 007111 474 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ 538 (617)
Q Consensus 474 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~q 538 (617)
+.+.|..++.+-+.+++.+.+..++|+.++..+-...+.++..+.+.......++..-+.++.|+
T Consensus 139 R~~~L~~~g~vS~~~~~~a~~~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~l~~a~ 203 (346)
T PRK10476 139 RLEPLLAKGYVSAQQVDQARTAQRDAEVSLNQALLQAQAAAAAVGGVDALVAQRAAREAALAIAE 203 (346)
T ss_pred HHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 34566777777778888888877777777665544444444444333333333333334444443
No 451
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=41.50 E-value=1.8e+02 Score=30.89 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=9.7
Q ss_pred chhhHHHHHHHHhhhhccCC
Q 007111 590 LQVEVFHLKQRLQSLENRAP 609 (617)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~ 609 (617)
+|.++...+..|..++=|||
T Consensus 195 ~~a~l~~a~~~l~~~~I~AP 214 (346)
T PRK10476 195 REAALAIAELHLEDTTVRAP 214 (346)
T ss_pred HHHHHHHHHHHhhcCEEECC
Confidence 33444444555554444554
No 452
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=41.47 E-value=1.6e+02 Score=33.53 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=8.2
Q ss_pred hhHHHHHHHHHHHHHhhh
Q 007111 557 HDVAFLKAVLDDTQKELH 574 (617)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~ 574 (617)
.+++-|+.-++++|+||.
T Consensus 152 ~~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 152 RRIRELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444445555543
No 453
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=41.38 E-value=1.6e+02 Score=28.52 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=17.5
Q ss_pred HHHHhchhhHhHHHHhhcHHHHhhhhhhh
Q 007111 478 LIRKNGILEGQLAAALVNREAAEKNFSSV 506 (617)
Q Consensus 478 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~ 506 (617)
+=.|.......|++|-..+++|++.+...
T Consensus 53 l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~ 81 (184)
T CHL00019 53 LDNRKQTILNTIRNSEERREEAIEKLEKA 81 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666654443
No 454
>smart00284 OLF Olfactomedin-like domains.
Probab=41.37 E-value=4.2e+02 Score=27.34 Aligned_cols=73 Identities=12% Similarity=0.106 Sum_probs=44.7
Q ss_pred CCEEEEEeecCCCCCccCeEEEEEC----CCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEEC
Q 007111 107 SSVLILFGGEDGKRRKLNDLHMFDL----KSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDF 182 (617)
Q Consensus 107 ~~~IYv~GG~~~~~~~~~~v~~yD~----~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~ 182 (617)
++++|++.|.+.. .+.++.|.- ....+.+.. .+|.+-.|.+.+++++. +|.--.. .+.|.+||+
T Consensus 34 ~~~~wv~~~~~~~---~~~v~ey~~~~~f~~~~~~~~~---~Lp~~~~GtG~VVYngs-lYY~~~~-----s~~iiKydL 101 (255)
T smart00284 34 KSLYWYMPLNTRV---LRSVREYSSMSDFQMGKNPTDH---PLPHAGQGTGVVVYNGS-LYFNKFN-----SHDICRFDL 101 (255)
T ss_pred CceEEEEccccCC---CcEEEEecCHHHHhccCCceEE---ECCCccccccEEEECce-EEEEecC-----CccEEEEEC
Confidence 4577877665321 244555532 223343321 46777788888999988 6554332 256999999
Q ss_pred CCCcEEEee
Q 007111 183 ETMIWTRIK 191 (617)
Q Consensus 183 ~t~~W~~~~ 191 (617)
.+..-....
T Consensus 102 ~t~~v~~~~ 110 (255)
T smart00284 102 TTETYQKEP 110 (255)
T ss_pred CCCcEEEEE
Confidence 998876443
No 455
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=41.35 E-value=91 Score=35.87 Aligned_cols=69 Identities=16% Similarity=0.066 Sum_probs=38.6
Q ss_pred chHHHHHHHHHHHHHHHhchh--hHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007111 465 SSIYQFYESKMAALIRKNGIL--EGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAG 533 (617)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~--~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~ 533 (617)
+.|.+.|+.+.+-...+...| ++.+...-+..++.++..-.=....+++.+.+..+.+|++..|+++..
T Consensus 167 ~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~ 237 (555)
T TIGR03545 167 EEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKS 237 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777 555666655556655531111123334444555555555555555444
No 456
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=41.30 E-value=1.1e+02 Score=32.30 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=7.0
Q ss_pred hhHHHHHHHHHHHHHhh
Q 007111 557 HDVAFLKAVLDDTQKEL 573 (617)
Q Consensus 557 ~~~~~~~~~~~~~~~~~ 573 (617)
.+++.+++-++..+..|
T Consensus 185 ~~l~~~~~~l~~a~~~l 201 (331)
T PRK03598 185 ASLAQAQAALAQAELNL 201 (331)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 457
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=41.21 E-value=1.5e+02 Score=30.73 Aligned_cols=15 Identities=7% Similarity=-0.035 Sum_probs=8.7
Q ss_pred CCCCCcccchhhhhh
Q 007111 361 PNPISGNVSLGKQFQ 375 (617)
Q Consensus 361 ~~~~~~~~~~~~~~~ 375 (617)
.+-.|+++.+|..|-
T Consensus 114 sNc~lkS~~~RS~yL 128 (269)
T PF05278_consen 114 SNCKLKSQQFRSYYL 128 (269)
T ss_pred hccccCcHHHHHHHH
Confidence 455566666666554
No 458
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=41.08 E-value=1.9e+02 Score=34.57 Aligned_cols=77 Identities=23% Similarity=0.248 Sum_probs=41.9
Q ss_pred HHHHHHhchhhHhHHHHhhcHHHHhhh---hhhhhhhH----HHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccc
Q 007111 476 AALIRKNGILEGQLAAALVNREAAEKN---FSSVLKSR----QEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIV 548 (617)
Q Consensus 476 ~~~~~~~~~~~~q~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~ 548 (617)
..+-.....||.+|+.+-..+..+.-. |+-.|..| .++.+..+.+..|++.|+.+|..+|
T Consensus 81 ~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~e------------- 147 (769)
T PF05911_consen 81 KEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTE------------- 147 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------------
Confidence 333344456666666665555333222 22223333 3344444456667777888777765
Q ss_pred cCCCcchhhhHHHHHHHHHHHHHhh
Q 007111 549 HSDNVRLEHDVAFLKAVLDDTQKEL 573 (617)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (617)
.|.++||-=+-=.+|||
T Consensus 148 --------ken~~Lkye~~~~~kel 164 (769)
T PF05911_consen 148 --------KENSSLKYELHVLSKEL 164 (769)
T ss_pred --------HHHHHHHHHHHHHHHHH
Confidence 45666666666666666
No 459
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=41.05 E-value=1.2e+02 Score=30.61 Aligned_cols=67 Identities=25% Similarity=0.234 Sum_probs=41.4
Q ss_pred HHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhccc
Q 007111 478 LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLS 545 (617)
Q Consensus 478 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~ 545 (617)
++.+...||.++..--+...+++..+.-+-++-..|+.|+++....++.|+-..+.. .||+.-|...
T Consensus 90 al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~a-kA~~~v~~~~ 156 (225)
T COG1842 90 ALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAA-KAQEKVNRSL 156 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 445555555555555555555555555556666677777777766666666665554 5777777643
No 460
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.05 E-value=1.9e+02 Score=23.81 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhhccCC
Q 007111 559 VAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLENRAP 609 (617)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (617)
+..|+.++.+.|+.+. ++|.-+.+|-+||..|++-+.
T Consensus 24 ieeLn~~laEq~~~i~--------------k~q~qlr~L~~kl~~~~~~~~ 60 (72)
T COG2900 24 IEELNDALAEQQLVID--------------KLQAQLRLLTEKLKDLQPSAI 60 (72)
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhhccccc
Confidence 4567888888888776 356788899999999996543
No 461
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=40.91 E-value=54 Score=27.78 Aligned_cols=44 Identities=30% Similarity=0.401 Sum_probs=32.2
Q ss_pred HHHHHHHHhhhHHhHHhhhc--ccccccCCCcchhhhHHHHHHHHH
Q 007111 524 MELLKEKLAGLELAQEEANS--LSNIVHSDNVRLEHDVAFLKAVLD 567 (617)
Q Consensus 524 ~~~lkek~~~~e~~qe~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 567 (617)
+..+.+||-.||....|+.| +-.||++=++..|.=-+||++.-+
T Consensus 17 iae~Q~rlK~Le~qk~E~EN~EIv~~VR~~~mtp~eL~~~L~~~~~ 62 (83)
T PF14193_consen 17 IAELQARLKELEAQKTEAENLEIVQMVRSMKMTPEELAAFLRAMKS 62 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 33455566667766666666 678999999999988888887643
No 462
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=40.83 E-value=95 Score=38.86 Aligned_cols=67 Identities=18% Similarity=0.185 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 007111 471 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELA 537 (617)
Q Consensus 471 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~ 537 (617)
...+++.|-++.+.+.++.+++.+..++.++++...-+..++++++.+...++++.|++..+....+
T Consensus 147 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (1123)
T PRK11448 147 LQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQE 213 (1123)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4455555555545555666666666777777766666678888999999888988888877665444
No 463
>PF13514 AAA_27: AAA domain
Probab=40.66 E-value=1.8e+02 Score=36.57 Aligned_cols=11 Identities=45% Similarity=0.631 Sum_probs=4.4
Q ss_pred HHHHHHHhhhh
Q 007111 595 FHLKQRLQSLE 605 (617)
Q Consensus 595 ~~~~~~~~~~~ 605 (617)
-.++..|..|+
T Consensus 920 ~~~~~~l~~l~ 930 (1111)
T PF13514_consen 920 AELEQELEALE 930 (1111)
T ss_pred HHHHHHHHHHh
Confidence 33344444443
No 464
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=40.63 E-value=1.7e+02 Score=27.93 Aligned_cols=30 Identities=13% Similarity=0.088 Sum_probs=19.5
Q ss_pred HHHHHhchhhHhHHHHhhcHHHHhhhhhhh
Q 007111 477 ALIRKNGILEGQLAAALVNREAAEKNFSSV 506 (617)
Q Consensus 477 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~ 506 (617)
.+=.|.......|++|-..+++|++.+...
T Consensus 47 ~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~ 76 (174)
T PRK07352 47 ILEERREAILQALKEAEERLRQAAQALAEA 76 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777777777777777665443
No 465
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=40.53 E-value=5.1e+02 Score=28.10 Aligned_cols=246 Identities=13% Similarity=0.095 Sum_probs=0.0
Q ss_pred CEEEecCCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEEC
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDT 80 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~ 80 (617)
+++.||.+ +..+.++..++.|-..- ..-.--.-.+....++.++..||..+.-. +|.-+.
T Consensus 78 l~aTGGgD-----D~AflW~~~~ge~~~el-----------tgHKDSVt~~~FshdgtlLATGdmsG~v~----v~~~st 137 (399)
T KOG0296|consen 78 LVATGGGD-----DLAFLWDISTGEFAGEL-----------TGHKDSVTCCSFSHDGTLLATGDMSGKVL----VFKVST 137 (399)
T ss_pred eEEecCCC-----ceEEEEEccCCcceeEe-----------cCCCCceEEEEEccCceEEEecCCCccEE----EEEccc
Q ss_pred CCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCc
Q 007111 81 ETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDK 160 (617)
Q Consensus 81 ~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~ 160 (617)
....|.....-.++---+.+. ...|+++|-.++. +|+|.+.+..-.++- +-+..++.++...-+++
T Consensus 138 g~~~~~~~~e~~dieWl~WHp-----~a~illAG~~DGs------vWmw~ip~~~~~kv~---~Gh~~~ct~G~f~pdGK 203 (399)
T KOG0296|consen 138 GGEQWKLDQEVEDIEWLKWHP-----RAHILLAGSTDGS------VWMWQIPSQALCKVM---SGHNSPCTCGEFIPDGK 203 (399)
T ss_pred CceEEEeecccCceEEEEecc-----cccEEEeecCCCc------EEEEECCCcceeeEe---cCCCCCcccccccCCCc
Q ss_pred EEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEe
Q 007111 161 NLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 240 (617)
Q Consensus 161 ~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l 240 (617)
-.+.|-.++. |-+||+.+..=...... ...+..+.+..-.....++-|..... ++..+..+.+-..+
T Consensus 204 -r~~tgy~dgt-----i~~Wn~ktg~p~~~~~~---~e~~~~~~~~~~~~~~~~~~g~~e~~----~~~~~~~sgKVv~~ 270 (399)
T KOG0296|consen 204 -RILTGYDDGT-----IIVWNPKTGQPLHKITQ---AEGLELPCISLNLAGSTLTKGNSEGV----ACGVNNGSGKVVNC 270 (399)
T ss_pred -eEEEEecCce-----EEEEecCCCceeEEecc---cccCcCCccccccccceeEeccCCcc----EEEEccccceEEEe
Q ss_pred ecCCCCCCCCCcceEEEEEee---cCCcEEEEEcCCCCCCCCeEEEEECCCCcccccccc
Q 007111 241 ITSPSSSVTSNKGFTLVLVQH---KEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMGRRS 297 (617)
Q Consensus 241 ~~~~~~~p~~r~~~s~v~v~~---~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W~~~w~~ 297 (617)
.....+...+...+....+.. ...-.|...|+.++ .|-+||..+.+-...+.+
T Consensus 271 ~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG----~i~iyD~a~~~~R~~c~h 326 (399)
T KOG0296|consen 271 NNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDG----TIAIYDLAASTLRHICEH 326 (399)
T ss_pred cCCCCccccccchhhhhhhhhcccccccchhhcccccc----eEEEEecccchhheeccC
No 466
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=40.50 E-value=1.5e+02 Score=34.25 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=16.6
Q ss_pred hccccccchhhHHHHHHHHhh
Q 007111 583 ERARAFQLQVEVFHLKQRLQS 603 (617)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~ 603 (617)
-.+|+.+||-||-+|++-|.+
T Consensus 247 aq~ri~~lE~e~e~L~~ql~~ 267 (629)
T KOG0963|consen 247 AQQRIVFLEREVEQLREQLAK 267 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456888888888888887765
No 467
>PRK01156 chromosome segregation protein; Provisional
Probab=40.32 E-value=1.7e+02 Score=35.60 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=12.0
Q ss_pred hhhHHHHHHHHHHHHHhhhhhccchh
Q 007111 556 EHDVAFLKAVLDDTQKELHSTRGVLA 581 (617)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (617)
+..++-+...+...+++++..++-++
T Consensus 673 ~~~~~~~~~~~~~l~~~l~~l~~~~~ 698 (895)
T PRK01156 673 TSRINDIEDNLKKSRKALDDAKANRA 698 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 468
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=40.28 E-value=1.8e+02 Score=27.85 Aligned_cols=29 Identities=17% Similarity=0.085 Sum_probs=19.7
Q ss_pred HHHHhchhhHhHHHHhhcHHHHhhhhhhh
Q 007111 478 LIRKNGILEGQLAAALVNREAAEKNFSSV 506 (617)
Q Consensus 478 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~ 506 (617)
+=.|....+++|++|-..+++|++.+...
T Consensus 45 l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~ 73 (173)
T PRK13460 45 LDERASGVQNDINKASELRLEAEALLKDY 73 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777777777777665544
No 469
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=39.80 E-value=2.1e+02 Score=28.38 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=22.0
Q ss_pred chhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 007111 483 GILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLK 528 (617)
Q Consensus 483 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk 528 (617)
..|+..=+.....+++||+.+..+-+-..+.|++|+++.+|...+.
T Consensus 80 ~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii 125 (204)
T PRK09174 80 GIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIA 125 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3343333334444444444444444445566666666655554443
No 470
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=39.66 E-value=1.7e+02 Score=29.60 Aligned_cols=40 Identities=15% Similarity=0.330 Sum_probs=17.4
Q ss_pred HHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHH
Q 007111 478 LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKL 517 (617)
Q Consensus 478 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (617)
+...+..|..++.......+.+-|+-..+.+.-+.++.|+
T Consensus 110 ~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~ 149 (251)
T cd07653 110 HLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKY 149 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444434443333
No 471
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=39.55 E-value=3.1e+02 Score=27.83 Aligned_cols=105 Identities=25% Similarity=0.301 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh-----hhHHhHHhhh
Q 007111 468 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLA-----GLELAQEEAN 542 (617)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~-----~~e~~qe~~~ 542 (617)
|+.-+.++..+-..+..|+.++++....+++.+..+..+-+.++++.--+.....+ |++=|+ -.+.-++-..
T Consensus 58 ~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~---L~~~v~~d~Pf~~~eR~~Rl~ 134 (251)
T PF11932_consen 58 YRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDE---LEQFVELDLPFLLEERQERLA 134 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcCCCCChHHHHHHHH
Confidence 34446666666667777777777777777777777665555555555444433333 333222 1222344556
Q ss_pred cccccccCCCcchhhhHHHHHHHHHHHHHhhhhhcc
Q 007111 543 SLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRG 578 (617)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (617)
.|..+...-++-+-. -+..|++-.|.|+.--|.
T Consensus 135 ~L~~~l~~~dv~~~e---k~r~vlea~~~E~~yg~~ 167 (251)
T PF11932_consen 135 RLRAMLDDADVSLAE---KFRRVLEAYQIEMEYGRT 167 (251)
T ss_pred HHHHhhhccCCCHHH---HHHHHHHHHHHHHHhCCc
Confidence 666667666665542 356677777777654443
No 472
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=39.53 E-value=1.3e+02 Score=34.33 Aligned_cols=101 Identities=16% Similarity=0.197 Sum_probs=53.1
Q ss_pred HHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhccc----ccccC
Q 007111 475 MAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLS----NIVHS 550 (617)
Q Consensus 475 ~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~----~~~~~ 550 (617)
++.+-.+.+.|.+-+.-+.+...+.+-+.....+--.+|...++....|.|.|+++..+| .+|=|--++| +-...
T Consensus 261 ~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~L-k~~Ie~Q~iS~~dve~mn~ 339 (581)
T KOG0995|consen 261 EESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDEL-KKQIELQGISGEDVERMNL 339 (581)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCHHHHHHHHH
Confidence 334444445555555555555555544444444444444444555555666666666666 3333322322 12344
Q ss_pred CCcchhhhHHHHHHHHHHHHHhhhhh
Q 007111 551 DNVRLEHDVAFLKAVLDDTQKELHST 576 (617)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (617)
++--|+++|+-++--+|..+||+-.+
T Consensus 340 Er~~l~r~l~~i~~~~d~l~k~vw~~ 365 (581)
T KOG0995|consen 340 ERNKLKRELNKIQSELDRLSKEVWEL 365 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 55566777777777777776665544
No 473
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=39.53 E-value=2.3e+02 Score=27.93 Aligned_cols=122 Identities=27% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCc
Q 007111 474 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNV 553 (617)
Q Consensus 474 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~ 553 (617)
+.+.|-+.-++++.-=+......+.+.+. ++|-|++=.+-..+..|.|.||.-+..+| |+.+. .++.+-
T Consensus 23 en~kL~~~ve~~ee~na~L~~e~~~L~~q----~~s~Qqal~~aK~l~eEledLk~~~~~lE---E~~~~----L~aq~r 91 (193)
T PF14662_consen 23 ENAKLQRSVETAEEGNAQLAEEITDLRKQ----LKSLQQALQKAKALEEELEDLKTLAKSLE---EENRS----LLAQAR 91 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH----HHHHHH
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhhc
Q 007111 554 RLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLEN 606 (617)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (617)
-+|.+---|-|=++.+|.|.----+-.-+=.-|.=+|+.+-..|+-.+...|.
T Consensus 92 qlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~ 144 (193)
T PF14662_consen 92 QLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFES 144 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHH
No 474
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=39.48 E-value=1.6e+02 Score=27.89 Aligned_cols=51 Identities=18% Similarity=0.205 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 007111 471 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEME 525 (617)
Q Consensus 471 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (617)
.+.+...+......|+.||.++-..++...++ -.+-++|.+++++...+++
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~----~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKKS----AKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHHHH
Confidence 34455555666667777777776666666653 3456666666666665555
No 475
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.22 E-value=5e+02 Score=27.57 Aligned_cols=116 Identities=16% Similarity=0.119 Sum_probs=64.7
Q ss_pred CCCCcccEEEEEC-CcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc--eEEEEEC-CEEEEEecCCCC
Q 007111 146 PSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG--CCGVLCG-TKWYIAGGGSRK 221 (617)
Q Consensus 146 P~~R~~h~a~~~~-~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~--ha~v~~~-~~IyI~GG~s~~ 221 (617)
|.|-.+|.++... ...+++|+-+.+ .-.++||+.++.=...-.. |..|.+ |++..-+ ..+|..-... .
T Consensus 2 ~lP~RgH~~a~~p~~~~avafaRRPG----~~~~v~D~~~g~~~~~~~a---~~gRHFyGHg~fs~dG~~LytTEnd~-~ 73 (305)
T PF07433_consen 2 PLPARGHGVAAHPTRPEAVAFARRPG----TFALVFDCRTGQLLQRLWA---PPGRHFYGHGVFSPDGRLLYTTENDY-E 73 (305)
T ss_pred CCCccccceeeCCCCCeEEEEEeCCC----cEEEEEEcCCCceeeEEcC---CCCCEEecCEEEcCCCCEEEEecccc-C
Confidence 3444577777765 344788876654 3588999988875544332 556654 4444444 4566654422 2
Q ss_pred CccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCC
Q 007111 222 KRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 274 (617)
Q Consensus 222 ~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~ 274 (617)
....-+-+||.. .....+...+ ....+.--+.+..+++.-++.-||-.
T Consensus 74 ~g~G~IgVyd~~-~~~~ri~E~~----s~GIGPHel~l~pDG~tLvVANGGI~ 121 (305)
T PF07433_consen 74 TGRGVIGVYDAA-RGYRRIGEFP----SHGIGPHELLLMPDGETLVVANGGIE 121 (305)
T ss_pred CCcEEEEEEECc-CCcEEEeEec----CCCcChhhEEEcCCCCEEEEEcCCCc
Confidence 223457799987 4555554322 22223222334334445566677864
No 476
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=39.03 E-value=3e+02 Score=31.05 Aligned_cols=117 Identities=16% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCC
Q 007111 473 SKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDN 552 (617)
Q Consensus 473 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~ 552 (617)
.+.+.+++....+..+++++.+...+.+......-..++++....+...+-...+.+.-+.+|..++..
T Consensus 29 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~----------- 97 (475)
T PRK10361 29 QQKAEQLAEREEMVAELSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHA----------- 97 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Q ss_pred cchhhhHHHHHHHHHHHHHhhhhhccchhh----hccccccch------hhHHHHHHHHhhhhcc
Q 007111 553 VRLEHDVAFLKAVLDDTQKELHSTRGVLAG----ERARAFQLQ------VEVFHLKQRLQSLENR 607 (617)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~------~~~~~~~~~~~~~~~~ 607 (617)
+.-++.|++.+++|.-.=..||. |+++.|.-| --|.=|++.|..++.+
T Consensus 98 -------~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~ 155 (475)
T PRK10361 98 -------DDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQ 155 (475)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
No 477
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=38.90 E-value=1e+02 Score=33.66 Aligned_cols=97 Identities=24% Similarity=0.294 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHH--HHH----------------------HHHHHH
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKK--LAD----------------------SLKEME 525 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----------------------~~~~~~ 525 (617)
.|..+|+...+-...||-||...+......|+++..+=++....+.- ||. ...|+.
T Consensus 248 al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~ 327 (384)
T PF03148_consen 248 ALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVK 327 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHH
Confidence 66777777778888888888888888888888777665555555433 221 446777
Q ss_pred HHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHH
Q 007111 526 LLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVL 566 (617)
Q Consensus 526 ~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (617)
.|++-+..|...-.+|...=+-.+..-.+||+|++.-...|
T Consensus 328 ~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~~sL 368 (384)
T PF03148_consen 328 ELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKNNSL 368 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766555555444444555567777776654443
No 478
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=38.90 E-value=4.9e+02 Score=30.38 Aligned_cols=69 Identities=14% Similarity=0.225 Sum_probs=39.8
Q ss_pred CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecC-----CCCC-CCCcc-eEEEEE-CCEEEEEecCCCCCccceEEE
Q 007111 158 DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR-----GFHP-SPRAG-CCGVLC-GTKWYIAGGGSRKKRHAETLI 229 (617)
Q Consensus 158 ~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~-----g~~P-~~R~~-ha~v~~-~~~IyI~GG~s~~~~~~~v~~ 229 (617)
.++.+++.||.+.. |++||.+++.=+.+... ...+ .++.. ++.+.- .+.+++-||..+ ++.+
T Consensus 128 k~~~lvaSgGLD~~-----IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek-----~lr~ 197 (735)
T KOG0308|consen 128 KNNELVASGGLDRK-----IFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK-----DLRL 197 (735)
T ss_pred cCceeEEecCCCcc-----EEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCccc-----ceEE
Confidence 45559999999854 89999886633222111 1112 23322 233333 345777777664 4788
Q ss_pred EECCCCc
Q 007111 230 FDILKGE 236 (617)
Q Consensus 230 yDl~~~~ 236 (617)
||+.+..
T Consensus 198 wDprt~~ 204 (735)
T KOG0308|consen 198 WDPRTCK 204 (735)
T ss_pred ecccccc
Confidence 9987753
No 479
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=38.68 E-value=4.1e+02 Score=30.15 Aligned_cols=151 Identities=17% Similarity=0.161 Sum_probs=0.0
Q ss_pred CCcccceEEEEE--CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCC
Q 007111 44 IPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKR 120 (617)
Q Consensus 44 ~p~r~~hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~ 120 (617)
.|..+..+++++ ++..+.+||.+. .+++|.+....-.... -....|..-+.+.+ .+--|+..|--...
T Consensus 440 ~~~~y~~s~vAv~~~~~~vaVGG~Dg------kvhvysl~g~~l~ee~---~~~~h~a~iT~vaySpd~~yla~~Da~rk 510 (603)
T KOG0318|consen 440 IPIGYESSAVAVSPDGSEVAVGGQDG------KVHVYSLSGDELKEEA---KLLEHRAAITDVAYSPDGAYLAAGDASRK 510 (603)
T ss_pred eccccccceEEEcCCCCEEEEecccc------eEEEEEecCCccccee---eeecccCCceEEEECCCCcEEEEeccCCc
Q ss_pred CccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCC
Q 007111 121 RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPR 200 (617)
Q Consensus 121 ~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R 200 (617)
..+-++...-+.++.|. +-.+|....+..-++. ++..|+.+.. |++|+.+.-.=. +...+..+..
T Consensus 511 vv~yd~~s~~~~~~~w~-------FHtakI~~~aWsP~n~-~vATGSlDt~-----Viiysv~kP~~~-i~iknAH~~g- 575 (603)
T KOG0318|consen 511 VVLYDVASREVKTNRWA-------FHTAKINCVAWSPNNK-LVATGSLDTN-----VIIYSVKKPAKH-IIIKNAHLGG- 575 (603)
T ss_pred EEEEEcccCceecceee-------eeeeeEEEEEeCCCce-EEEeccccce-----EEEEEccChhhh-eEeccccccC-
Q ss_pred cceEEEEECCEEEEEecCC
Q 007111 201 AGCCGVLCGTKWYIAGGGS 219 (617)
Q Consensus 201 ~~ha~v~~~~~IyI~GG~s 219 (617)
-..+..+++.-++--|..
T Consensus 576 -Vn~v~wlde~tvvSsG~D 593 (603)
T KOG0318|consen 576 -VNSVAWLDESTVVSSGQD 593 (603)
T ss_pred -ceeEEEecCceEEeccCc
No 480
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=38.57 E-value=1.5e+02 Score=29.12 Aligned_cols=33 Identities=24% Similarity=0.174 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhh
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKN 502 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~ 502 (617)
.++.+|+.|-.+...|+.++.+..+..|+++|+
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~ 156 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKR 156 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555554
No 481
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=38.46 E-value=1.1e+02 Score=34.68 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=32.0
Q ss_pred HHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhh
Q 007111 477 ALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEA 541 (617)
Q Consensus 477 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~ 541 (617)
...|..+.....|....+-+.+..-..+.+-.-.+++++-+.....|.+.||-.+..++.++||+
T Consensus 83 e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 83 EQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 34455555444444333333322222222322344455555555556666666666666666665
No 482
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=38.38 E-value=2.2e+02 Score=27.24 Aligned_cols=41 Identities=15% Similarity=0.014 Sum_probs=18.7
Q ss_pred hhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Q 007111 484 ILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEM 524 (617)
Q Consensus 484 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (617)
.|+..=+....+.+.||+....+-+-.++.+++|+++.+|.
T Consensus 46 ~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea 86 (175)
T PRK14472 46 ALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEA 86 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444443
No 483
>PRK11519 tyrosine kinase; Provisional
Probab=38.35 E-value=1.9e+02 Score=34.45 Aligned_cols=95 Identities=14% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCC
Q 007111 472 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSD 551 (617)
Q Consensus 472 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~ 551 (617)
+.+.+.++.....++.|+.++.....+.......=--..+.++.+++.+.++++.|+.+++.+-..|-+...
T Consensus 303 ~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~-------- 374 (719)
T PRK11519 303 PLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVR-------- 374 (719)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH--------
Q ss_pred CcchhhhHHHHHHHHHHHHHhhhhhc
Q 007111 552 NVRLEHDVAFLKAVLDDTQKELHSTR 577 (617)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (617)
||+|+..-+++.+.+-+-+--++
T Consensus 375 ---L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 375 ---LTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHh
No 484
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=38.28 E-value=1.5e+02 Score=31.90 Aligned_cols=33 Identities=15% Similarity=0.026 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhh
Q 007111 471 YESKMAALIRKNGILEGQLAAALVNREAAEKNF 503 (617)
Q Consensus 471 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~ 503 (617)
++.+++++-.....++.++..|.+..+.|++++
T Consensus 97 ~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~ 129 (370)
T PRK11578 97 AENQIKEVEATLMELRAQRQQAEAELKLARVTL 129 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443333445556666666666666553
No 485
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=38.19 E-value=4.8e+02 Score=27.05 Aligned_cols=85 Identities=20% Similarity=0.253 Sum_probs=48.8
Q ss_pred cCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc
Q 007111 123 LNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG 202 (617)
Q Consensus 123 ~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ 202 (617)
-.++-.+|+.+..-.+- -.||.... ++....++-+||.||-+.. +++||..|+.=...-..+ .+-.-
T Consensus 204 gssV~Fwdaksf~~lKs---~k~P~nV~--SASL~P~k~~fVaGged~~-----~~kfDy~TgeEi~~~nkg---h~gpV 270 (334)
T KOG0278|consen 204 GSSVKFWDAKSFGLLKS---YKMPCNVE--SASLHPKKEFFVAGGEDFK-----VYKFDYNTGEEIGSYNKG---HFGPV 270 (334)
T ss_pred CceeEEeccccccceee---ccCccccc--cccccCCCceEEecCcceE-----EEEEeccCCceeeecccC---CCCce
Confidence 34566777766653332 24565432 3333444459999998754 889999887644442222 11222
Q ss_pred eEEEEE-CCEEEEEecCCC
Q 007111 203 CCGVLC-GTKWYIAGGGSR 220 (617)
Q Consensus 203 ha~v~~-~~~IyI~GG~s~ 220 (617)
|++-.- ++.+|..|-..+
T Consensus 271 hcVrFSPdGE~yAsGSEDG 289 (334)
T KOG0278|consen 271 HCVRFSPDGELYASGSEDG 289 (334)
T ss_pred EEEEECCCCceeeccCCCc
Confidence 433332 888999886554
No 486
>KOG4182 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.12 E-value=1.2e+02 Score=33.71 Aligned_cols=136 Identities=26% Similarity=0.304 Sum_probs=77.8
Q ss_pred chHHHHHHHHHHHHHHH-hchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH--------------H---
Q 007111 465 SSIYQFYESKMAALIRK-NGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEME--------------L--- 526 (617)
Q Consensus 465 ~~~~~~~~~~~~~~~~~-~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~--- 526 (617)
+..+.+|+.|++-++.+ +++||.|---|++..-.|.|+..-.-.+--.+..|++.++-|+. -
T Consensus 37 e~~i~dle~KLQia~eeigaalEEqSggal~rmPRaakd~~~Lq~Da~~Lq~kma~il~el~~aegesadCiAaLaRldn 116 (828)
T KOG4182|consen 37 EAFIRDLEAKLQIAIEEIGAALEEQSGGALARMPRAAKDSAALQADAHRLQEKMAAILLELAAAEGESADCIAALARLDN 116 (828)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhccchHhhCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHhcc
Confidence 56678999999988765 67899998888888777777655444444455555555444332 2
Q ss_pred HHHHHhhhHHhHHhhhcccccccC-CCcchhhhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhh
Q 007111 527 LKEKLAGLELAQEEANSLSNIVHS-DNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLE 605 (617)
Q Consensus 527 lkek~~~~e~~qe~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (617)
-|.|+..+..--.|+.-|.|...- +.+-.-.|+.-.-..|.-.||=||-.-. ||+=--| |-|+|+| +.||..|-
T Consensus 117 ~kQkleaA~esLQdaaGl~nL~a~lED~Fa~gDL~~aadkLaalqkcL~A~~e-laefAe~--qkQlE~~--edRLEAla 191 (828)
T KOG4182|consen 117 KKQKLEAAKESLQDAAGLGNLLAELEDGFARGDLKGAADKLAALQKCLHAQEE-LAEFAER--QKQLEDF--EDRLEALA 191 (828)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHH-hHHHHHH--HHHHHHH--HHHHHHHc
Confidence 344444444433455555554321 0111113444444456678999986543 3432111 4466654 67777663
No 487
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=37.92 E-value=1.9e+02 Score=26.82 Aligned_cols=9 Identities=56% Similarity=0.778 Sum_probs=4.0
Q ss_pred hHHHHHHHH
Q 007111 593 EVFHLKQRL 601 (617)
Q Consensus 593 ~~~~~~~~~ 601 (617)
|+..||.||
T Consensus 141 E~~kLk~rL 149 (151)
T PF11559_consen 141 EIEKLKERL 149 (151)
T ss_pred HHHHHHHHh
Confidence 444444444
No 488
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=37.67 E-value=4.3e+02 Score=26.35 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=17.9
Q ss_pred hHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 007111 486 EGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSL 521 (617)
Q Consensus 486 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (617)
...|+.+.+..-..|+.+...-...++.+.+-..++
T Consensus 44 r~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al 79 (219)
T TIGR02977 44 RTTSARTIADKKELERRVSRLEAQVADWQEKAELAL 79 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555445555554444333
No 489
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=37.58 E-value=1.8e+02 Score=28.87 Aligned_cols=53 Identities=32% Similarity=0.378 Sum_probs=31.5
Q ss_pred chhhHhHHHHhhcHHHHhhhhh---hhhhhHH----HHHHHHHHHHHHHHHHHHHHhhhH
Q 007111 483 GILEGQLAAALVNREAAEKNFS---SVLKSRQ----EMEKKLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 483 ~~~~~q~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~~~~~~~~~lkek~~~~e 535 (617)
-.|.+||-.+-+..+.-+..+. ..+.+++ ..+..|.....|.++|+||+..+|
T Consensus 34 v~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le 93 (202)
T PF06818_consen 34 VSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLE 93 (202)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhH
Confidence 3456677666665555555443 3343332 234555666668888888888766
No 490
>PRK10698 phage shock protein PspA; Provisional
Probab=37.57 E-value=1.4e+02 Score=29.95 Aligned_cols=58 Identities=14% Similarity=0.172 Sum_probs=27.9
Q ss_pred hhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhc
Q 007111 485 LEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS 543 (617)
Q Consensus 485 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~ 543 (617)
.+.+++..-+..++.+..+..+-...++|+.|+.+.-.....|+-+...+ .||...|.
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A-~a~~~~~~ 154 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAA-SSSRDVRR 154 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34444444444444444444445555555555555555555554444444 24444443
No 491
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=37.38 E-value=2.1e+02 Score=35.58 Aligned_cols=77 Identities=18% Similarity=0.199 Sum_probs=39.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccC--CCcchh-hhHHHHHHHHHHHHHhhhhhcc
Q 007111 502 NFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHS--DNVRLE-HDVAFLKAVLDDTQKELHSTRG 578 (617)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 578 (617)
.++-.-.-++.++..+.+..+|++.++++.+.+-..-++++++--.+-. +..+.| .|+.-|.-...|.-|.|++-+.
T Consensus 502 k~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e 581 (1317)
T KOG0612|consen 502 KLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELE 581 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhh
Confidence 3333445556666666666666666666666665555555544332221 122222 2244455555555555555544
No 492
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=37.33 E-value=3.5e+02 Score=25.40 Aligned_cols=103 Identities=17% Similarity=0.147 Sum_probs=0.0
Q ss_pred hchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHH
Q 007111 482 NGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAF 561 (617)
Q Consensus 482 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~ 561 (617)
...++..=+......++||+....+-+-.++.|.+|+++.+|...+.++....-.+.-+ .-
T Consensus 48 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~-------------------~~ 108 (156)
T CHL00118 48 LKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKEAKEIVE-------------------NE 108 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HH
Q ss_pred HHHHHHHHHHhhhhhccchhhhcccccc-chhhHHHHHHHHhh
Q 007111 562 LKAVLDDTQKELHSTRGVLAGERARAFQ-LQVEVFHLKQRLQS 603 (617)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 603 (617)
+...-+|..+.+...|.-++-||.+|.+ |+-+|..|-..+-+
T Consensus 109 ~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~v~~lA~~ia~ 151 (156)
T CHL00118 109 LKQAQKYIDSLLNEATKQLEAQKEKALKSLEEQVDTLSDQIEE 151 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=37.19 E-value=1.6e+02 Score=31.84 Aligned_cols=65 Identities=29% Similarity=0.381 Sum_probs=42.4
Q ss_pred hhcHHHHhhhhhhhhhhHHHHHHHHHHHH-------HHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHH
Q 007111 493 LVNREAAEKNFSSVLKSRQEMEKKLADSL-------KEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAV 565 (617)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (617)
....|..||=+..|.|.+++-|+-|+++. +.||-.=|+-...| |.-+-|||.|
T Consensus 180 kKlqdrveK~k~evqktkekYektl~el~~yt~~YmE~MeqvFe~CQ~fE--------------------~~Rl~Ffkei 239 (472)
T KOG2856|consen 180 KKLQDRVEKCKQEVQKTKEKYEKTLAELNKYTPVYMEDMEQVFEQCQQFE--------------------EKRLQFFKEI 239 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHH
Confidence 33445556666667777777777777643 34444444444333 2347899999
Q ss_pred HHHHHHhhhhhc
Q 007111 566 LDDTQKELHSTR 577 (617)
Q Consensus 566 ~~~~~~~~~~~~ 577 (617)
|-++|+-|.-+|
T Consensus 240 l~~v~~hldl~~ 251 (472)
T KOG2856|consen 240 LLKVQRHLDLSR 251 (472)
T ss_pred HHHHHHHhhhhh
Confidence 999999887665
No 494
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=37.18 E-value=2.2e+02 Score=27.14 Aligned_cols=65 Identities=11% Similarity=0.169 Sum_probs=35.5
Q ss_pred HHHHhchhhHhHHHHhhcHHHHhhhhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcc
Q 007111 478 LIRKNGILEGQLAAALVNREAAEKNFSSV----LKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSL 544 (617)
Q Consensus 478 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~ 544 (617)
+=.|.....++|+.|...+++|++.+... -+.+++.+.-+++..++.+..++++ ++.|++|++++
T Consensus 51 l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~i--i~~A~~ea~~~ 119 (167)
T PRK08475 51 YKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKI--EKQTKDDIENL 119 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 33455566666666666666666654433 2344444444555555555544443 55666666554
No 495
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=36.88 E-value=1.7e+02 Score=28.51 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=23.0
Q ss_pred chHHHHHHHHHHHHHHHhchhhHhHHH
Q 007111 465 SSIYQFYESKMAALIRKNGILEGQLAA 491 (617)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~q~~~ 491 (617)
.++.+-...|+.++-++.+.||+||.+
T Consensus 15 a~Lv~~LQ~KV~qYr~rc~ele~~l~~ 41 (182)
T PF15035_consen 15 AQLVQRLQAKVLQYRKRCAELEQQLSA 41 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466678889999999999999999954
No 496
>smart00030 CLb CLUSTERIN Beta chain.
Probab=36.80 E-value=78 Score=31.19 Aligned_cols=41 Identities=27% Similarity=0.209 Sum_probs=30.3
Q ss_pred HhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 007111 481 KNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSL 521 (617)
Q Consensus 481 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (617)
-.+.-+.+=...|..+|++.|++.-||+.-+++|.||++..
T Consensus 37 ~mer~~eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~ 77 (206)
T smart00030 37 LIEKTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQ 77 (206)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677788888888888888888888888887643
No 497
>PF11134 Phage_stabilise: Phage stabilisation protein; InterPro: IPR021098 This entry represents the Bacteriophage P22, Gp10, DNA-stabilising protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are phage proteins involved with stabilising the head assembly unit and condensed DNA within the capsid [].
Probab=36.78 E-value=6.4e+02 Score=28.14 Aligned_cols=208 Identities=11% Similarity=0.047 Sum_probs=0.0
Q ss_pred EECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECC-EEEEEeecCCCCCccCeEEEEECC
Q 007111 54 SWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLK 132 (617)
Q Consensus 54 ~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~-~IYv~GG~~~~~~~~~~v~~yD~~ 132 (617)
.+++.+|.+-| +.-|+.....|+++ .-...+++..+. ..++++|...- |+||..
T Consensus 63 t~~~~vYrV~G-----------------~kLYqv~~~vGdI~-GsgrVsMah~~~sq~V~i~G~~~g-------YrYdga 117 (469)
T PF11134_consen 63 TVNDTVYRVCG-----------------NKLYQVAAEVGDIA-GSGRVSMAHSGGSQAVAINGKLKG-------YRYDGA 117 (469)
T ss_pred eeCCeEEEEEC-----------------ceeEEeeeeeeeec-CCceEEEEeCCceeEEEEccccce-------EEEech
Q ss_pred CCcEEEeecCCCCCCCCccc-EEEEECCcEEEEEccCCCCCCCCeEEEEECCC-CcEEEeecCCCCCCCCcceEEEEECC
Q 007111 133 SLTWLPLHCTGTGPSPRSNH-VAALYDDKNLLIFGGSSKSKTLNDLYSLDFET-MIWTRIKIRGFHPSPRAGCCGVLCGT 210 (617)
Q Consensus 133 t~~W~~l~~~g~~P~~R~~h-~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t-~~W~~~~~~g~~P~~R~~ha~v~~~~ 210 (617)
++.-++.+.....|..-.+- .-+.+.+. -||+ -..++...---..+|... +.-........-|.+..+ +..+.+
T Consensus 118 t~~l~~~~~~~~~p~y~~g~v~Dv~~~dG-ryVw-~~pgt~~f~vSdL~D~T~~d~~~~~ytAEsqPD~Ivg--l~~~r~ 193 (469)
T PF11134_consen 118 TKTLSNWPTDEGYPQYDLGDVVDVTRLDG-RYVW-VKPGTGYFFVSDLEDETKPDRYLDFYTAESQPDNIVG--LAVWRR 193 (469)
T ss_pred hhHhhcCCCcCcccccCccceeEEEeccc-eEEE-EeCCCceEEEeecccccCcchhhhhhhhccCCCceEE--EEEeee
Q ss_pred EEEEEecCCCCCccceEEEEECCCCc----E------EEeecCCCCCCCCCcceEEEEEee--cCCcEEEEEcCCCCCCC
Q 007111 211 KWYIAGGGSRKKRHAETLIFDILKGE----W------SVAITSPSSSVTSNKGFTLVLVQH--KEKDFLVAFGGIKKEPS 278 (617)
Q Consensus 211 ~IyI~GG~s~~~~~~~v~~yDl~~~~----W------~~l~~~~~~~p~~r~~~s~v~v~~--~~~~~L~I~GG~~~~~~ 278 (617)
.||+||-.+ .++|...=..+. . ..-..+.......+.+-+.+.+++ .+...||+++|+.....
T Consensus 194 ~I~~fG~~T-----iEvf~nTGasd~~~~~y~r~pg~~Iq~GcAa~~s~~~~~~t~~wlg~~~~G~~sVy~~~gyq~~RI 268 (469)
T PF11134_consen 194 EIWCFGAST-----IEVFYNTGASDFTQPPYQRQPGAMIQKGCAAKHSKTKFGNTVAWLGHDATGAPSVYRINGYQASRI 268 (469)
T ss_pred eEEEEeccc-----EEEEEccCCcccccchhhhCCcceeeccccccceeeecCCEEEEeccCCCCCceEEEecCCceeee
Q ss_pred --------------------------------------CeEEEEECCCCcccccc
Q 007111 279 --------------------------------------NQVEVLSIEKNESSMGR 295 (617)
Q Consensus 279 --------------------------------------~dV~vyd~~~~~W~~~w 295 (617)
+.+|+||..++.|-.+|
T Consensus 269 ST~~IE~~l~~ya~~ela~af~et~~f~~h~~l~ihlp~~tlcyD~at~~~~~qw 323 (469)
T PF11134_consen 269 STHAIEKALRSYAHDELAIAFMETYQFDGHEFLLIHLPRKTLCYDAATSQWGEQW 323 (469)
T ss_pred ccHHHHHHHHhhccHHHHHHHHHHhhcCceEEEEEEcCCceEEEEcccCCcccce
No 498
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=36.77 E-value=2.2e+02 Score=27.26 Aligned_cols=75 Identities=11% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH--HHHHHhhhHHhHHhhhcc
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMEL--LKEKLAGLELAQEEANSL 544 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--lkek~~~~e~~qe~~~~~ 544 (617)
.|.-=...+=.|......+|++|-..+++|++.+...=+-.++++.+...+..+... -+++-.-++.|++|+..+
T Consensus 39 l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~ 115 (173)
T PRK13453 39 AWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGM 115 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=36.63 E-value=7.7e+02 Score=29.01 Aligned_cols=238 Identities=12% Similarity=0.059 Sum_probs=0.0
Q ss_pred CCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEe
Q 007111 9 GNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVV 88 (617)
Q Consensus 9 ~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~ 88 (617)
++..++.+++++.....-..--. .+.+.-..+.+...++.+|+.--..++....-..-+ ++....|+.+
T Consensus 243 ~~~~tsE~~ll~a~~p~~~p~vv----------~pr~~g~eY~~eh~~d~f~i~sN~~gknf~l~~ap~-~~~~~~w~~~ 311 (682)
T COG1770 243 GSHITSEVRLLDADDPEAEPKVV----------LPRENGVEYSVEHGGDRFYILSNADGKNFKLVRAPV-SADKSNWREL 311 (682)
T ss_pred CCCcceeEEEEecCCCCCceEEE----------EEcCCCcEEeeeecCcEEEEEecCCCcceEEEEccC-CCChhcCeee
Q ss_pred eccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccC
Q 007111 89 EAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGS 168 (617)
Q Consensus 89 ~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~ 168 (617)
- +.++.+.--....+.+.|.+. .....+..+++.+..++.=..+......-..-.....-...+. |-+. +
T Consensus 312 I---~h~~~~~l~~~~~f~~~lVl~----eR~~glp~v~v~~~~~~~~~~i~f~~~ay~~~l~~~~e~~s~~-lR~~--y 381 (682)
T COG1770 312 I---PHREDVRLEGVDLFADHLVLL----ERQEGLPRVVVRDRKTGEERGIAFDDEAYSAGLSGNPEFDSDR-LRYS--Y 381 (682)
T ss_pred e---ccCCCceeeeeeeeccEEEEE----ecccCCceEEEEecCCCceeeEEecchhhhccccCCCCCCCcc-EEEE--e
Q ss_pred CCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEE--EECCCCcEEEeecCCCC
Q 007111 169 SKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLI--FDILKGEWSVAITSPSS 246 (617)
Q Consensus 169 ~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~--yDl~~~~W~~l~~~~~~ 246 (617)
+.......++-||+.+++|+.+... +.+-.+-...+.-..|++-......-...=+|+ +.+....-..+-.-..-
T Consensus 382 sS~ttP~~~~~~dm~t~er~~Lkqq---eV~~g~dp~~Y~s~riwa~a~dgv~VPVSLvyrkd~~~~g~~p~lLygYGaY 458 (682)
T COG1770 382 SSMTTPATLFDYDMATGERTLLKQQ---EVPGGFDPEDYVSRRIWATADDGVQVPVSLVYRKDTKLDGSAPLLLYGYGAY 458 (682)
T ss_pred ecccccceeEEeeccCCcEEEEEec---cCCCCCChhHeEEEEEEEEcCCCcEeeEEEEEecccCCCCCCcEEEEEeccc
Q ss_pred CCCCCcceEEEEEeecCCcEEEEE
Q 007111 247 SVTSNKGFTLVLVQHKEKDFLVAF 270 (617)
Q Consensus 247 ~p~~r~~~s~v~v~~~~~~~L~I~ 270 (617)
...-...|+...+.--+++.||.+
T Consensus 459 G~s~~p~Fs~~~lSLlDRGfiyAI 482 (682)
T COG1770 459 GISMDPSFSIARLSLLDRGFVYAI 482 (682)
T ss_pred cccCCcCcccceeeeecCceEEEE
No 500
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=36.57 E-value=5.7e+02 Score=27.52 Aligned_cols=285 Identities=10% Similarity=0.111 Sum_probs=0.0
Q ss_pred EEEecCCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEE-EEEcccCCCCCCceEEEEEEC
Q 007111 2 IVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKV-LLVGGKTDSGSDRVSVWTFDT 80 (617)
Q Consensus 2 ~V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~l-yV~GG~~~~~~~~~~v~~yd~ 80 (617)
+.+|...... ...++.|++.+.+=..-.. .....-.+-+-..++.+- +++.+...........|.+|+
T Consensus 5 ~YiGtyT~~~-s~gI~v~~ld~~~g~l~~~----------~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~ 73 (346)
T COG2706 5 VYIGTYTKRE-SQGIYVFNLDTKTGELSLL----------QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDP 73 (346)
T ss_pred EEEeeecccC-CCceEEEEEeCcccccchh----------hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcC
Q ss_pred CCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecC---CCCCCCC-----ccc
Q 007111 81 ETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT---GTGPSPR-----SNH 152 (617)
Q Consensus 81 ~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~---g~~P~~R-----~~h 152 (617)
.+++.+.+... ..+..--.|.++--++++.+..-+... .-.++-..-...-|..+... ++.|.+| ..+
T Consensus 74 ~~G~Lt~ln~~-~~~g~~p~yvsvd~~g~~vf~AnY~~g---~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 74 DDGRLTFLNRQ-TLPGSPPCYVSVDEDGRFVFVANYHSG---SVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred CCCeEEEeecc-ccCCCCCeEEEECCCCCEEEEEEccCc---eEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Q ss_pred EEEEECCcEEEEEc-cCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEE
Q 007111 153 VAALYDDKNLLIFG-GSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIF 230 (617)
Q Consensus 153 ~a~~~~~~~LyV~G-G~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~y 230 (617)
+-..-+++++++.- |.+. |+.|++..+.-+.....--.|-.-..|-+.-- +...|++.-.+.. -++|.|
T Consensus 150 a~~tP~~~~l~v~DLG~Dr------i~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~st---V~v~~y 220 (346)
T COG2706 150 ANFTPDGRYLVVPDLGTDR------IFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNST---VDVLEY 220 (346)
T ss_pred eeeCCCCCEEEEeecCCce------EEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCE---EEEEEE
Q ss_pred ECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc--------------cccccc
Q 007111 231 DILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE--------------SSMGRR 296 (617)
Q Consensus 231 Dl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~--------------W~~~w~ 296 (617)
|....+...+......+-..-...+++.+-...+++++.+--. ..+.|++|.+..+. |+|.+.
T Consensus 221 ~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR---g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~ 297 (346)
T COG2706 221 NPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR---GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFN 297 (346)
T ss_pred cCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC---CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccce
Q ss_pred cccCccCCceeeeccCCCC
Q 007111 297 STPNAKGPGQLLFEKRSSS 315 (617)
Q Consensus 297 ~~~~~~~~~v~vfGG~~~~ 315 (617)
..+. +.-+++.+-.+++
T Consensus 298 i~~~--g~~Liaa~q~sd~ 314 (346)
T COG2706 298 INPS--GRFLIAANQKSDN 314 (346)
T ss_pred eCCC--CCEEEEEccCCCc
Done!