Query 007111
Match_columns 617
No_of_seqs 289 out of 2434
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 17:26:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007111.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007111hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ii7_A Kelch-like protein 7; p 100.0 5.1E-41 1.7E-45 347.2 35.6 260 1-294 14-278 (306)
2 1zgk_A Kelch-like ECH-associat 100.0 4.8E-41 1.7E-45 348.7 33.6 263 1-294 27-293 (308)
3 2xn4_A Kelch-like protein 2; s 100.0 2.1E-40 7.2E-45 342.0 36.3 262 1-294 18-282 (302)
4 2vpj_A Kelch-like protein 12; 100.0 2.5E-40 8.7E-45 340.8 34.2 263 1-294 17-284 (301)
5 4asc_A Kelch repeat and BTB do 100.0 3.8E-41 1.3E-45 350.3 27.6 259 1-294 7-283 (315)
6 2woz_A Kelch repeat and BTB do 100.0 9.7E-40 3.3E-44 340.1 30.0 259 1-294 18-293 (318)
7 1zgk_A Kelch-like ECH-associat 100.0 3.7E-37 1.3E-41 319.5 26.6 251 44-314 12-273 (308)
8 2xn4_A Kelch-like protein 2; s 100.0 2.7E-36 9.2E-41 311.2 32.0 235 1-260 64-299 (302)
9 2uvk_A YJHT; unknown function, 100.0 5.9E-37 2E-41 323.6 27.1 263 1-293 22-347 (357)
10 3ii7_A Kelch-like protein 7; p 100.0 5.6E-36 1.9E-40 309.4 29.7 235 1-261 58-295 (306)
11 4asc_A Kelch repeat and BTB do 100.0 1.3E-36 4.6E-41 315.9 25.0 242 1-273 48-306 (315)
12 2woz_A Kelch repeat and BTB do 100.0 6.6E-36 2.3E-40 311.1 26.9 241 1-272 59-315 (318)
13 2vpj_A Kelch-like protein 12; 100.0 3E-35 1E-39 302.9 30.5 233 1-260 65-300 (301)
14 2uvk_A YJHT; unknown function, 100.0 1.7E-34 5.8E-39 304.8 27.5 251 42-314 6-327 (357)
15 2zwa_A Leucine carboxyl methyl 100.0 1E-34 3.5E-39 335.0 25.4 268 1-288 400-694 (695)
16 2zwa_A Leucine carboxyl methyl 100.0 1.4E-33 4.7E-38 325.5 29.3 254 43-312 385-674 (695)
17 1k3i_A Galactose oxidase precu 100.0 7.3E-30 2.5E-34 292.3 18.1 288 1-313 200-531 (656)
18 1k3i_A Galactose oxidase precu 99.9 1E-26 3.5E-31 266.2 20.3 261 1-287 256-548 (656)
19 3mbr_X Glutamine cyclotransfer 98.0 0.0017 5.8E-08 64.8 23.7 163 48-240 22-185 (243)
20 3dsm_A Uncharacterized protein 97.9 0.012 4.1E-07 60.3 30.2 231 13-291 16-256 (328)
21 3dsm_A Uncharacterized protein 97.9 0.0069 2.4E-07 62.1 27.1 229 14-290 64-303 (328)
22 2ovr_B FBW7, F-BOX/WD repeat p 97.8 0.012 4E-07 62.4 28.3 199 53-289 245-443 (445)
23 3nol_A Glutamine cyclotransfer 97.7 0.0078 2.7E-07 60.6 23.2 162 49-241 45-208 (262)
24 1l0q_A Surface layer protein; 97.6 0.0066 2.2E-07 62.7 22.5 225 1-290 4-235 (391)
25 2ovr_B FBW7, F-BOX/WD repeat p 97.5 0.048 1.7E-06 57.5 27.9 187 56-291 208-394 (445)
26 2iwa_A Glutamine cyclotransfer 97.5 0.031 1.1E-06 56.3 24.3 204 50-288 24-237 (266)
27 1l0q_A Surface layer protein; 97.5 0.015 5.3E-07 59.8 22.8 217 14-290 54-277 (391)
28 3q7m_A Lipoprotein YFGL, BAMB; 97.4 0.14 4.8E-06 52.8 29.9 218 14-290 63-298 (376)
29 4ery_A WD repeat-containing pr 97.4 0.1 3.6E-06 51.8 27.6 219 15-290 46-270 (312)
30 3bws_A Protein LP49; two-domai 97.4 0.01 3.6E-07 62.0 20.7 227 15-290 102-336 (433)
31 4aez_A CDC20, WD repeat-contai 97.3 0.073 2.5E-06 55.5 26.1 221 14-291 113-339 (401)
32 1p22_A F-BOX/WD-repeat protein 97.3 0.036 1.2E-06 58.6 23.3 213 15-289 154-366 (435)
33 3jrp_A Fusion protein of prote 97.2 0.012 4.1E-07 59.7 17.8 224 15-288 34-287 (379)
34 3nok_A Glutaminyl cyclase; bet 97.2 0.015 5.1E-07 58.6 17.9 157 49-239 57-215 (268)
35 3bws_A Protein LP49; two-domai 97.2 0.12 4.2E-06 53.7 25.8 230 15-291 145-393 (433)
36 1gxr_A ESG1, transducin-like e 97.1 0.083 2.8E-06 52.4 23.2 187 56-290 108-298 (337)
37 2hqs_A Protein TOLB; TOLB, PAL 97.1 0.077 2.6E-06 56.2 24.0 226 14-290 159-389 (415)
38 1gxr_A ESG1, transducin-like e 97.1 0.094 3.2E-06 52.0 22.8 213 14-286 119-335 (337)
39 3mbr_X Glutamine cyclotransfer 97.1 0.069 2.4E-06 53.1 21.3 164 95-291 18-182 (243)
40 4aez_A CDC20, WD repeat-contai 97.0 0.12 4.3E-06 53.6 24.4 220 15-290 157-382 (401)
41 2iwa_A Glutamine cyclotransfer 97.0 0.19 6.5E-06 50.5 24.4 179 14-233 44-236 (266)
42 3nol_A Glutamine cyclotransfer 97.0 0.053 1.8E-06 54.4 19.7 168 14-218 65-245 (262)
43 4ery_A WD repeat-containing pr 97.0 0.27 9.4E-06 48.7 25.0 150 56-237 118-271 (312)
44 3v9f_A Two-component system se 96.9 0.091 3.1E-06 60.4 23.1 248 15-314 384-648 (781)
45 1p22_A F-BOX/WD-repeat protein 96.8 0.091 3.1E-06 55.4 21.2 189 52-290 138-327 (435)
46 2ojh_A Uncharacterized protein 96.8 0.14 4.6E-06 49.4 21.0 229 12-291 20-261 (297)
47 3ow8_A WD repeat-containing pr 96.8 0.28 9.4E-06 49.7 24.1 189 56-290 91-281 (321)
48 1k8k_C P40, ARP2/3 complex 41 96.8 0.12 4E-06 52.3 21.2 225 14-292 30-280 (372)
49 3jrp_A Fusion protein of prote 96.8 0.053 1.8E-06 54.8 18.4 194 56-289 22-241 (379)
50 3vgz_A Uncharacterized protein 96.8 0.51 1.7E-05 47.1 29.1 229 13-291 68-306 (353)
51 1k8k_C P40, ARP2/3 complex 41 96.8 0.3 1E-05 49.1 24.0 69 158-242 213-284 (372)
52 3v7d_B Cell division control p 96.8 0.65 2.2E-05 48.8 27.4 146 106-291 278-424 (464)
53 3v9f_A Two-component system se 96.7 0.13 4.5E-06 59.0 23.1 225 14-289 427-657 (781)
54 3ow8_A WD repeat-containing pr 96.7 0.46 1.6E-05 48.0 24.8 185 56-286 133-319 (321)
55 3q7m_A Lipoprotein YFGL, BAMB; 96.7 0.67 2.3E-05 47.5 27.3 174 14-239 153-344 (376)
56 3vl1_A 26S proteasome regulato 96.7 0.18 6.2E-06 52.1 22.1 191 56-290 108-324 (420)
57 3e5z_A Putative gluconolactona 96.7 0.3 1E-05 48.3 22.8 221 14-290 50-288 (296)
58 1ri6_A Putative isomerase YBHE 96.7 0.31 1.1E-05 48.3 22.8 233 14-293 60-315 (343)
59 3jro_A Fusion protein of prote 96.7 0.013 4.3E-07 67.5 13.8 226 15-289 32-286 (753)
60 3vgz_A Uncharacterized protein 96.6 0.64 2.2E-05 46.4 27.7 191 14-240 111-309 (353)
61 1got_B GT-beta; complex (GTP-b 96.6 0.42 1.4E-05 48.5 23.7 146 56-236 154-303 (340)
62 3v7d_B Cell division control p 96.5 1.1 3.7E-05 47.0 27.4 185 54-285 277-462 (464)
63 3mkq_A Coatomer beta'-subunit; 96.4 0.2 6.9E-06 56.9 22.0 220 14-290 35-261 (814)
64 3vl1_A 26S proteasome regulato 96.4 0.58 2E-05 48.2 23.8 218 15-289 120-366 (420)
65 1kb0_A Quinohemoprotein alcoho 96.4 0.67 2.3E-05 52.6 26.0 124 52-191 73-208 (677)
66 1r5m_A SIR4-interacting protei 96.4 0.17 5.7E-06 51.9 19.2 145 57-236 217-363 (425)
67 1r5m_A SIR4-interacting protei 96.4 0.57 1.9E-05 47.8 23.1 191 56-290 160-363 (425)
68 1got_B GT-beta; complex (GTP-b 96.4 1 3.4E-05 45.6 28.1 193 56-290 108-303 (340)
69 1sq9_A Antiviral protein SKI8; 96.3 0.14 4.9E-06 52.3 18.0 116 107-238 197-326 (397)
70 1sq9_A Antiviral protein SKI8; 96.3 0.54 1.9E-05 47.9 22.2 204 58-290 82-324 (397)
71 4gga_A P55CDC, cell division c 96.3 0.76 2.6E-05 48.0 23.7 225 14-290 125-355 (420)
72 4aow_A Guanine nucleotide-bind 96.2 0.32 1.1E-05 48.2 19.6 149 109-289 186-338 (340)
73 2z3z_A Dipeptidyl aminopeptida 96.2 0.94 3.2E-05 50.7 25.5 195 72-290 234-437 (706)
74 4a2l_A BT_4663, two-component 96.2 0.47 1.6E-05 54.5 23.3 226 14-289 427-660 (795)
75 1vyh_C Platelet-activating fac 96.2 0.57 1.9E-05 49.0 22.2 187 56-290 161-371 (410)
76 3u4y_A Uncharacterized protein 96.1 0.62 2.1E-05 46.3 21.4 224 14-291 20-255 (331)
77 2z2n_A Virginiamycin B lyase; 96.1 1.1 3.6E-05 43.5 26.3 190 50-289 102-296 (299)
78 3zwl_B Eukaryotic translation 96.1 1.2 4.2E-05 44.2 24.4 187 15-240 55-255 (369)
79 2z3z_A Dipeptidyl aminopeptida 96.1 1.3 4.3E-05 49.6 25.9 153 123-290 234-393 (706)
80 4a2l_A BT_4663, two-component 96.1 0.72 2.5E-05 52.9 24.4 229 15-291 378-617 (795)
81 3jro_A Fusion protein of prote 96.1 0.14 4.7E-06 58.8 18.1 195 56-289 20-239 (753)
82 3odt_A Protein DOA1; ubiquitin 96.1 1.2 4E-05 43.4 23.4 190 54-293 111-301 (313)
83 2hqs_A Protein TOLB; TOLB, PAL 96.1 0.36 1.2E-05 50.9 20.0 187 14-241 203-394 (415)
84 4g56_B MGC81050 protein; prote 96.0 0.27 9.4E-06 50.5 18.2 189 56-289 150-344 (357)
85 4gqb_B Methylosome protein 50; 96.0 0.27 9.1E-06 50.6 18.0 188 56-289 138-332 (344)
86 3k26_A Polycomb protein EED; W 95.9 0.093 3.2E-06 52.7 13.9 66 56-135 127-194 (366)
87 1pjx_A Dfpase, DIISOPROPYLFLUO 95.9 1.5 5.1E-05 43.0 22.9 233 14-290 46-301 (314)
88 3u4y_A Uncharacterized protein 95.9 0.63 2.2E-05 46.2 20.0 185 74-290 109-306 (331)
89 3g4e_A Regucalcin; six bladed 95.9 0.63 2.2E-05 46.3 19.9 216 14-273 35-262 (297)
90 4gga_A P55CDC, cell division c 95.8 1 3.6E-05 46.9 22.2 222 15-290 170-397 (420)
91 3mkq_A Coatomer beta'-subunit; 95.8 1.1 3.7E-05 50.8 23.9 180 14-239 77-264 (814)
92 3fm0_A Protein CIAO1; WDR39,SG 95.8 1.8 6.2E-05 43.8 23.5 170 15-220 39-216 (345)
93 3hfq_A Uncharacterized protein 95.8 0.89 3E-05 45.7 20.9 235 15-288 19-271 (347)
94 3nok_A Glutaminyl cyclase; bet 95.8 0.38 1.3E-05 48.4 17.4 157 99-291 56-213 (268)
95 1yiq_A Quinohemoprotein alcoho 95.8 3.3 0.00011 47.0 27.6 124 52-190 66-200 (689)
96 2ad6_A Methanol dehydrogenase 95.8 1.6 5.5E-05 48.4 24.5 124 52-191 58-194 (571)
97 4e54_B DNA damage-binding prot 95.8 0.2 6.8E-06 52.9 16.4 150 56-236 176-329 (435)
98 4a11_B DNA excision repair pro 95.7 0.27 9.3E-06 50.0 16.5 151 56-236 111-278 (408)
99 2hes_X YDR267CP; beta-propelle 95.6 0.77 2.6E-05 46.3 19.5 198 56-288 118-328 (330)
100 4a11_B DNA excision repair pro 95.6 0.64 2.2E-05 47.2 18.9 226 14-290 122-367 (408)
101 3scy_A Hypothetical bacterial 95.6 1.4 4.7E-05 44.6 21.4 115 58-184 14-129 (361)
102 2ghs_A AGR_C_1268P; regucalcin 95.6 2 6.7E-05 43.5 22.5 186 14-240 71-266 (326)
103 2vdu_B TRNA (guanine-N(7)-)-me 95.6 0.94 3.2E-05 47.7 20.8 113 56-190 160-277 (450)
104 3hfq_A Uncharacterized protein 95.5 0.98 3.3E-05 45.4 20.0 202 60-288 5-218 (347)
105 1ri6_A Putative isomerase YBHE 95.5 0.75 2.6E-05 45.4 18.9 185 74-287 61-261 (343)
106 2ynn_A Coatomer subunit beta'; 95.5 2.2 7.7E-05 42.2 22.6 220 15-290 36-261 (304)
107 2ojh_A Uncharacterized protein 95.5 0.48 1.6E-05 45.4 16.7 193 14-241 62-265 (297)
108 1jmx_B Amine dehydrogenase; ox 95.4 1.3 4.5E-05 43.8 20.5 149 14-190 21-181 (349)
109 2xdw_A Prolyl endopeptidase; a 95.4 3.1 0.0001 46.9 25.7 236 15-290 152-416 (710)
110 4gqb_B Methylosome protein 50; 95.4 0.4 1.4E-05 49.3 16.9 150 107-290 138-291 (344)
111 2aq5_A Coronin-1A; WD40 repeat 95.4 1.6 5.6E-05 44.9 21.7 200 56-290 93-301 (402)
112 3ei3_B DNA damage-binding prot 95.4 1.1 3.6E-05 45.8 19.9 188 58-290 87-284 (383)
113 3dwl_C Actin-related protein 2 95.4 0.27 9.2E-06 50.0 15.2 140 15-185 34-178 (377)
114 2dg1_A DRP35, lactonase; beta 95.4 0.98 3.4E-05 45.1 19.2 240 14-287 66-315 (333)
115 1kv9_A Type II quinohemoprotei 95.4 4.8 0.00017 45.4 27.2 124 52-191 62-196 (668)
116 1vyh_C Platelet-activating fac 95.3 0.88 3E-05 47.6 19.4 148 56-239 119-270 (410)
117 2z2n_A Virginiamycin B lyase; 95.2 2.3 7.9E-05 41.0 25.4 215 14-287 36-254 (299)
118 3fm0_A Protein CIAO1; WDR39,SG 95.2 0.64 2.2E-05 47.2 17.4 191 56-286 27-223 (345)
119 4g56_B MGC81050 protein; prote 95.2 0.18 6E-06 52.0 13.2 198 56-290 53-260 (357)
120 3mmy_A MRNA export factor; mRN 95.1 2.8 9.4E-05 41.5 21.7 193 56-290 97-306 (368)
121 3zwl_B Eukaryotic translation 95.1 1.4 4.7E-05 43.8 19.5 196 56-291 43-252 (369)
122 2ecf_A Dipeptidyl peptidase IV 95.1 0.46 1.6E-05 53.5 17.4 105 176-289 264-370 (741)
123 2pbi_B Guanine nucleotide-bind 95.1 3.4 0.00012 42.0 26.0 148 108-290 166-317 (354)
124 2xdw_A Prolyl endopeptidase; a 95.1 2.1 7.1E-05 48.3 22.9 211 56-290 135-370 (710)
125 3ei3_B DNA damage-binding prot 95.1 0.9 3.1E-05 46.3 18.2 177 15-235 97-283 (383)
126 3pe7_A Oligogalacturonate lyas 95.1 3 0.0001 42.2 22.1 199 15-241 61-280 (388)
127 2dfs_A Myosin-5A; myosin-V, in 95.0 0.018 6E-07 69.1 5.6 114 481-604 922-1035(1080)
128 2pm9_A Protein WEB1, protein t 95.0 1 3.5E-05 46.0 18.4 199 56-290 78-296 (416)
129 3azo_A Aminopeptidase; POP fam 94.9 5.7 0.00019 43.8 26.7 167 56-242 198-377 (662)
130 1pby_B Quinohemoprotein amine 94.9 1.8 6.1E-05 42.5 19.4 176 73-290 115-312 (337)
131 3azo_A Aminopeptidase; POP fam 94.9 2 6.9E-05 47.5 21.9 193 72-290 160-371 (662)
132 1yfq_A Cell cycle arrest prote 94.9 1.2 4.2E-05 44.0 18.3 194 56-290 67-284 (342)
133 1pby_B Quinohemoprotein amine 94.8 1.9 6.4E-05 42.4 19.3 147 14-191 11-170 (337)
134 1rwi_B Serine/threonine-protei 94.8 2.9 0.0001 39.9 20.6 192 51-290 71-266 (270)
135 2pm9_A Protein WEB1, protein t 94.8 0.98 3.4E-05 46.2 17.7 197 57-290 126-339 (416)
136 4aow_A Guanine nucleotide-bind 94.8 3.3 0.00011 40.7 21.0 188 56-290 97-288 (340)
137 2ocy_A RAB guanine nucleotide 94.8 0.15 5.1E-06 46.7 9.7 122 472-607 5-151 (154)
138 2ynn_A Coatomer subunit beta'; 94.7 2.3 8E-05 42.0 19.8 191 56-290 24-219 (304)
139 2ecf_A Dipeptidyl peptidase IV 94.7 3.4 0.00011 46.3 23.3 149 125-288 264-415 (741)
140 1kb0_A Quinohemoprotein alcoho 94.7 2.8 9.6E-05 47.4 22.6 115 14-139 87-207 (677)
141 1w6s_A Methanol dehydrogenase 94.7 4 0.00014 45.6 23.5 124 52-191 58-200 (599)
142 1erj_A Transcriptional repress 94.7 4.6 0.00016 41.6 23.2 136 15-185 146-288 (393)
143 1nir_A Nitrite reductase; hemo 94.7 0.71 2.4E-05 50.8 17.1 194 73-290 248-460 (543)
144 4e54_B DNA damage-binding prot 94.7 0.42 1.4E-05 50.3 14.6 193 56-290 131-329 (435)
145 3frx_A Guanine nucleotide-bind 94.6 4 0.00014 40.6 21.5 189 56-288 118-317 (319)
146 2hes_X YDR267CP; beta-propelle 94.6 4.2 0.00014 40.7 23.0 153 107-291 118-283 (330)
147 1i84_S Smooth muscle myosin he 94.6 0.035 1.2E-06 67.4 6.6 55 483-537 881-935 (1184)
148 3dr2_A Exported gluconolactona 94.5 2.9 0.0001 41.4 20.0 195 56-286 96-304 (305)
149 3dwl_C Actin-related protein 2 94.5 0.14 5E-06 52.1 10.4 149 56-234 22-177 (377)
150 1pgu_A Actin interacting prote 94.5 1.9 6.3E-05 46.6 19.9 153 110-289 175-329 (615)
151 3dm0_A Maltose-binding peripla 94.5 3.3 0.00011 46.4 22.5 149 56-238 483-636 (694)
152 2pm7_B Protein transport prote 94.5 2 6.9E-05 42.3 18.6 195 57-291 67-289 (297)
153 1i84_S Smooth muscle myosin he 94.5 0.073 2.5E-06 64.6 9.0 45 488-532 900-944 (1184)
154 3odt_A Protein DOA1; ubiquitin 94.4 1.7 5.9E-05 42.1 17.7 147 56-239 154-301 (313)
155 3scy_A Hypothetical bacterial 94.4 4.6 0.00016 40.6 25.6 247 2-287 16-290 (361)
156 3sfz_A APAF-1, apoptotic pepti 94.4 0.39 1.3E-05 57.7 15.3 193 56-291 1014-1210(1249)
157 3pe7_A Oligogalacturonate lyas 94.4 4.8 0.00016 40.6 22.3 208 72-291 167-387 (388)
158 3c5m_A Oligogalacturonate lyas 94.4 0.89 3E-05 46.1 16.0 198 14-240 168-390 (396)
159 2pbi_B Guanine nucleotide-bind 94.3 5.1 0.00017 40.7 22.6 166 74-275 177-348 (354)
160 3i2n_A WD repeat-containing pr 94.3 0.69 2.4E-05 46.0 14.8 222 14-290 44-293 (357)
161 3g4e_A Regucalcin; six bladed 94.3 2.5 8.4E-05 41.9 18.8 193 56-291 24-232 (297)
162 3oja_B Anopheles plasmodium-re 94.3 0.02 6.9E-07 64.0 3.4 57 551-607 524-580 (597)
163 1q7f_A NHL, brain tumor CG1071 94.2 4.3 0.00015 39.3 24.8 202 50-289 33-239 (286)
164 2qc5_A Streptogramin B lactona 94.2 4.2 0.00014 39.2 23.6 177 14-240 83-265 (300)
165 1jmx_B Amine dehydrogenase; ox 94.2 0.95 3.2E-05 44.9 15.4 159 56-239 10-180 (349)
166 2aq5_A Coronin-1A; WD40 repeat 94.2 1.6 5.3E-05 45.0 17.5 153 58-236 145-301 (402)
167 3ol1_A Vimentin; structural ge 94.1 0.52 1.8E-05 41.4 11.5 98 464-575 11-115 (119)
168 3f3f_A Nucleoporin SEH1; struc 94.1 4.5 0.00015 39.3 24.5 150 57-234 71-249 (351)
169 1flg_A Protein (quinoprotein e 94.1 8.9 0.0003 42.5 24.9 122 52-190 64-201 (582)
170 3c5m_A Oligogalacturonate lyas 94.1 1.8 6.3E-05 43.7 17.7 203 72-293 167-389 (396)
171 3no2_A Uncharacterized protein 94.0 5.3 0.00018 39.5 21.9 178 14-240 15-203 (276)
172 1q7f_A NHL, brain tumor CG1071 94.0 4.8 0.00016 39.0 27.9 197 50-288 80-280 (286)
173 2qc5_A Streptogramin B lactona 93.9 4.8 0.00016 38.7 25.7 213 14-287 41-259 (300)
174 2fxo_A Myosin heavy chain, car 93.9 0.54 1.8E-05 41.9 11.4 88 469-570 37-124 (129)
175 1pgu_A Actin interacting prote 93.9 5.7 0.0002 42.7 22.0 198 56-290 77-285 (615)
176 1rwi_B Serine/threonine-protei 93.6 3 0.0001 39.8 17.5 194 50-290 27-224 (270)
177 2dg1_A DRP35, lactonase; beta 93.6 3.6 0.00012 40.8 18.5 155 56-234 55-213 (333)
178 1yr2_A Prolyl oligopeptidase; 93.6 11 0.00037 42.6 24.6 151 72-240 242-401 (741)
179 1nir_A Nitrite reductase; hemo 93.6 7.5 0.00026 42.5 22.4 225 14-288 159-402 (543)
180 3sfz_A APAF-1, apoptotic pepti 93.5 5.7 0.00019 47.5 23.1 220 15-290 638-873 (1249)
181 2xbg_A YCF48-like protein; pho 93.5 7.3 0.00025 39.4 24.0 208 23-286 108-320 (327)
182 1yr2_A Prolyl oligopeptidase; 93.4 6.5 0.00022 44.5 22.4 208 56-289 173-396 (741)
183 3mmy_A MRNA export factor; mRN 93.2 7 0.00024 38.5 23.1 188 57-289 54-248 (368)
184 3iz6_a 40S ribosomal protein R 93.2 8.4 0.00029 39.3 21.5 150 56-234 217-375 (380)
185 2bkl_A Prolyl endopeptidase; m 93.2 3.1 0.00011 46.7 19.1 196 14-240 147-357 (695)
186 2ad6_A Methanol dehydrogenase 93.1 8 0.00027 42.7 21.9 111 14-139 73-193 (571)
187 3fvz_A Peptidyl-glycine alpha- 93.1 7.9 0.00027 38.7 30.0 237 14-288 69-322 (329)
188 3no2_A Uncharacterized protein 93.0 5.8 0.0002 39.1 18.8 185 56-290 4-197 (276)
189 3iuj_A Prolyl endopeptidase; h 93.0 13 0.00045 41.7 23.9 234 14-291 155-408 (693)
190 3dm0_A Maltose-binding peripla 92.9 10 0.00036 42.2 22.9 189 56-290 441-634 (694)
191 3i2n_A WD repeat-containing pr 92.8 2.2 7.6E-05 42.2 15.5 194 57-290 31-245 (357)
192 1qks_A Cytochrome CD1 nitrite 92.8 6.6 0.00023 43.4 20.7 205 56-289 255-478 (567)
193 2xyi_A Probable histone-bindin 92.8 1.1 3.9E-05 46.9 13.8 101 107-234 243-353 (430)
194 1c1g_A Tropomyosin; contractIl 92.8 0.44 1.5E-05 46.3 9.9 46 559-604 239-284 (284)
195 1yiq_A Quinohemoprotein alcoho 92.7 15 0.0005 41.5 23.8 115 14-139 80-200 (689)
196 2vdu_B TRNA (guanine-N(7)-)-me 92.7 8.9 0.0003 40.1 20.7 160 57-239 210-398 (450)
197 3lrv_A PRE-mRNA-splicing facto 92.4 9.7 0.00033 38.0 21.6 190 56-290 47-246 (343)
198 4ggc_A P55CDC, cell division c 92.4 8.4 0.00029 37.2 23.9 224 14-290 45-275 (318)
199 2bkl_A Prolyl endopeptidase; m 92.3 4.3 0.00015 45.6 18.6 245 13-288 93-351 (695)
200 3e5z_A Putative gluconolactona 92.3 8.9 0.0003 37.3 19.4 191 56-289 39-247 (296)
201 2oiz_A Aromatic amine dehydrog 92.1 12 0.0004 38.3 22.3 66 209-289 265-335 (361)
202 3ott_A Two-component system se 92.0 5.3 0.00018 45.3 19.2 207 74-314 393-618 (758)
203 3lrv_A PRE-mRNA-splicing facto 91.8 11 0.00038 37.5 22.4 147 55-236 93-246 (343)
204 3iz6_a 40S ribosomal protein R 91.7 13 0.00043 38.0 23.7 184 74-288 181-375 (380)
205 1erj_A Transcriptional repress 91.7 13 0.00045 38.0 21.3 151 107-289 134-288 (393)
206 1ic2_A Tropomyosin alpha chain 91.7 1 3.6E-05 36.6 9.1 71 471-541 4-74 (81)
207 4ggc_A P55CDC, cell division c 91.7 10 0.00034 36.6 21.3 220 15-288 90-315 (318)
208 1pjx_A Dfpase, DIISOPROPYLFLUO 91.6 4.1 0.00014 39.8 15.5 186 15-235 93-300 (314)
209 2ymu_A WD-40 repeat protein; u 91.5 13 0.00044 39.7 20.7 174 56-275 396-571 (577)
210 2xyi_A Probable histone-bindin 91.4 1.9 6.4E-05 45.2 13.4 145 110-288 196-353 (430)
211 2xbg_A YCF48-like protein; pho 91.4 13 0.00045 37.4 23.7 216 23-293 65-284 (327)
212 3bg1_A Protein SEC13 homolog; 91.2 3.9 0.00013 40.7 15.1 112 56-190 24-143 (316)
213 2xzm_R RACK1; ribosome, transl 91.2 11 0.00037 37.8 18.5 20 158-183 224-243 (343)
214 2pm7_B Protein transport prote 91.1 7.7 0.00026 38.0 17.1 114 108-241 170-293 (297)
215 1yfq_A Cell cycle arrest prote 90.6 13 0.00046 36.2 19.3 189 56-289 22-226 (342)
216 2ymu_A WD-40 repeat protein; u 90.6 20 0.00068 38.2 22.8 183 56-288 355-539 (577)
217 2mad_H Methylamine dehydrogena 90.4 18 0.00062 37.3 28.8 71 209-291 278-353 (373)
218 3ott_A Two-component system se 90.3 20 0.00067 40.6 21.6 181 14-241 82-267 (758)
219 1qhu_A Protein (hemopexin); be 89.6 8.9 0.0003 41.4 16.8 187 56-288 158-385 (460)
220 3bg1_A Protein SEC13 homolog; 89.4 5.5 0.00019 39.5 14.4 111 109-242 180-302 (316)
221 1kv9_A Type II quinohemoprotei 89.2 32 0.0011 38.5 24.0 114 14-139 76-195 (668)
222 3gre_A Serine/threonine-protei 89.1 22 0.00075 36.4 21.1 153 56-236 181-361 (437)
223 3o0z_A RHO-associated protein 88.9 3 0.0001 38.6 10.6 100 482-605 8-117 (168)
224 2ghs_A AGR_C_1268P; regucalcin 88.5 20 0.00067 35.8 18.0 145 56-233 60-209 (326)
225 3o4h_A Acylamino-acid-releasin 88.5 11 0.00037 40.9 17.1 111 55-188 120-231 (582)
226 1itv_A MMP9; adaptive molecula 88.2 16 0.00055 34.4 15.8 153 50-237 10-177 (195)
227 3k26_A Polycomb protein EED; W 88.1 19 0.00067 35.2 17.4 106 108-235 85-193 (366)
228 3iuj_A Prolyl endopeptidase; h 88.1 38 0.0013 37.9 23.9 149 73-244 259-415 (693)
229 3na7_A HP0958; flagellar bioge 88.0 4.2 0.00015 40.2 12.1 70 469-538 14-83 (256)
230 3ju4_A Endo-N-acetylneuraminid 87.2 16 0.00055 38.6 15.8 130 49-182 341-512 (670)
231 3b7f_A Glycosyl hydrolase, BNR 87.0 30 0.001 35.6 20.7 197 74-294 32-268 (394)
232 1w6s_A Methanol dehydrogenase 86.9 35 0.0012 37.8 20.2 111 14-139 73-199 (599)
233 3vkg_A Dynein heavy chain, cyt 86.4 2.1 7.1E-05 56.6 10.8 83 498-582 1956-2039(3245)
234 1qks_A Cytochrome CD1 nitrite 86.4 43 0.0015 36.8 25.4 225 14-289 177-422 (567)
235 1npe_A Nidogen, entactin; glyc 86.2 24 0.00082 33.7 23.0 157 50-239 82-243 (267)
236 3c75_H MADH, methylamine dehyd 86.0 34 0.0012 36.3 18.7 71 209-291 330-405 (426)
237 3f3f_A Nucleoporin SEH1; struc 86.0 25 0.00086 33.7 21.7 197 56-289 22-250 (351)
238 1k32_A Tricorn protease; prote 85.5 53 0.0018 38.5 21.9 75 56-139 389-467 (1045)
239 2dfs_A Myosin-5A; myosin-V, in 85.0 1.9 6.4E-05 51.7 8.8 76 492-571 975-1051(1080)
240 3gre_A Serine/threonine-protei 85.0 25 0.00084 36.0 16.8 156 107-290 181-361 (437)
241 3na7_A HP0958; flagellar bioge 85.0 2.3 8E-05 42.1 8.3 62 470-531 50-113 (256)
242 3u1c_A Tropomyosin alpha-1 cha 84.9 2.3 7.9E-05 36.1 7.1 59 477-535 20-78 (101)
243 4h5i_A Guanine nucleotide-exch 84.9 35 0.0012 34.5 21.7 181 15-233 158-342 (365)
244 3o4h_A Acylamino-acid-releasin 84.6 32 0.0011 37.1 18.2 140 72-238 89-231 (582)
245 2b9c_A Striated-muscle alpha t 84.4 4.7 0.00016 36.6 9.3 119 474-606 4-122 (147)
246 2fp8_A Strictosidine synthase; 83.9 35 0.0012 33.6 24.8 208 50-290 83-315 (322)
247 1pex_A Collagenase-3, MMP-13; 83.2 32 0.0011 32.7 17.8 155 50-239 27-197 (207)
248 2ece_A 462AA long hypothetical 82.9 55 0.0019 35.2 20.2 218 56-288 95-352 (462)
249 1pex_A Collagenase-3, MMP-13; 82.7 21 0.00071 34.1 13.7 153 102-290 28-194 (207)
250 3vkg_A Dynein heavy chain, cyt 82.3 1.5 5.2E-05 57.8 6.9 98 478-586 1978-2088(3245)
251 3uux_B Mitochondrial division 82.1 2.5 8.4E-05 41.2 6.7 74 470-571 153-226 (242)
252 3u59_A Tropomyosin beta chain; 82.1 2.9 0.0001 35.4 6.5 64 474-537 17-80 (101)
253 1nr0_A Actin interacting prote 82.0 63 0.0021 35.2 22.5 153 107-290 201-357 (611)
254 3hnw_A Uncharacterized protein 82.0 10 0.00035 34.0 10.4 91 468-573 34-126 (138)
255 2cn3_A Xyloglucanase, beta-1,4 81.9 75 0.0025 36.0 29.0 234 15-273 46-322 (737)
256 2gop_A Trilobed protease; beta 81.2 43 0.0015 32.8 21.5 141 72-240 151-297 (347)
257 2akf_A Coronin-1A; coiled coil 80.8 1.1 3.8E-05 28.8 2.5 21 554-574 3-23 (32)
258 2mad_H Methylamine dehydrogena 80.8 54 0.0018 33.6 26.3 122 56-189 32-161 (373)
259 1qhu_A Protein (hemopexin); be 80.3 67 0.0023 34.5 18.6 101 56-185 107-216 (460)
260 2gop_A Trilobed protease; beta 80.0 47 0.0016 32.5 20.1 145 72-241 84-258 (347)
261 1su3_A Interstitial collagenas 80.0 35 0.0012 36.6 15.7 156 50-239 266-437 (450)
262 3frx_A Guanine nucleotide-bind 79.8 48 0.0017 32.5 20.3 146 107-290 76-229 (319)
263 2oiz_A Aromatic amine dehydrog 79.7 55 0.0019 33.1 18.3 122 57-189 16-145 (361)
264 3dr2_A Exported gluconolactona 79.6 36 0.0012 33.3 15.0 105 72-192 168-275 (305)
265 2v71_A Nuclear distribution pr 78.5 22 0.00074 33.6 11.8 100 462-571 6-109 (189)
266 1xfd_A DIP, dipeptidyl aminope 78.0 26 0.0009 38.7 14.7 111 74-192 38-151 (723)
267 1ci6_A Transcription factor AT 77.8 7.4 0.00025 30.0 7.0 55 500-568 8-62 (63)
268 3c7x_A Matrix metalloproteinas 77.6 38 0.0013 31.8 13.6 153 51-236 10-177 (196)
269 1flg_A Protein (quinoprotein e 77.6 89 0.003 34.3 23.0 107 15-139 79-201 (582)
270 1ic2_A Tropomyosin alpha chain 77.5 14 0.00049 29.7 9.0 69 469-537 9-77 (81)
271 2p4o_A Hypothetical protein; p 77.5 56 0.0019 32.0 21.7 189 50-272 75-277 (306)
272 1k32_A Tricorn protease; prote 77.2 1.2E+02 0.004 35.5 27.6 194 14-240 33-241 (1045)
273 3hnw_A Uncharacterized protein 77.2 9.8 0.00034 34.1 8.7 62 479-540 74-135 (138)
274 3c75_H MADH, methylamine dehyd 76.9 80 0.0027 33.4 19.6 122 56-188 84-213 (426)
275 3fvz_A Peptidyl-glycine alpha- 76.5 62 0.0021 31.9 24.9 162 51-233 147-321 (329)
276 1xfd_A DIP, dipeptidyl aminope 76.2 97 0.0033 34.0 20.2 65 124-191 228-296 (723)
277 2efr_A General control protein 75.5 8.1 0.00028 35.3 7.7 79 478-563 75-153 (155)
278 3a7p_A Autophagy protein 16; c 75.3 2.3 7.7E-05 38.6 3.8 23 489-511 30-52 (152)
279 3ter_A Mammalian stromal inter 75.2 11 0.00038 33.5 8.2 53 468-520 40-102 (136)
280 3u59_A Tropomyosin beta chain; 74.7 20 0.00069 30.1 9.6 62 472-533 8-69 (101)
281 2efr_A General control protein 74.6 11 0.00038 34.4 8.4 55 522-576 77-131 (155)
282 1go4_E MAD1 (mitotic arrest de 74.5 9.4 0.00032 32.2 7.2 72 465-536 11-96 (100)
283 3u1c_A Tropomyosin alpha-1 cha 74.4 22 0.00077 29.9 9.8 63 472-534 8-70 (101)
284 3oja_A Leucine-rich immune mol 74.2 2.5 8.4E-05 45.8 4.7 102 466-578 354-470 (487)
285 2no2_A HIP-I, huntingtin-inter 74.1 14 0.00046 31.7 8.3 29 476-504 4-32 (107)
286 3ni0_A Bone marrow stromal ant 73.4 17 0.00057 30.2 8.2 19 484-502 22-40 (99)
287 3teq_A Stromal interaction mol 73.3 6.5 0.00022 33.2 5.9 42 468-509 9-50 (101)
288 2v4h_A NF-kappa-B essential mo 72.7 11 0.00038 32.1 7.3 68 515-603 38-108 (110)
289 3hrp_A Uncharacterized protein 72.5 94 0.0032 32.2 29.1 201 56-286 182-408 (409)
290 2e7s_A RAB guanine nucleotide 72.3 2.5 8.6E-05 37.7 3.3 77 507-603 59-135 (135)
291 3o0z_A RHO-associated protein 71.8 18 0.0006 33.4 9.0 105 469-573 51-156 (168)
292 3b7f_A Glycosyl hydrolase, BNR 71.7 92 0.0031 31.7 22.5 193 15-241 32-269 (394)
293 3oja_B Anopheles plasmodium-re 71.5 10 0.00036 41.7 9.1 13 522-534 544-556 (597)
294 3ba0_A Macrophage metalloelast 71.4 89 0.003 32.3 15.7 157 50-239 184-355 (365)
295 1nr0_A Actin interacting prote 71.4 1.2E+02 0.0041 32.9 20.6 155 56-239 201-360 (611)
296 1z68_A Fibroblast activation p 71.1 1.2E+02 0.0041 33.3 17.9 152 73-235 224-394 (719)
297 3he5_B Synzip2; heterodimeric 71.1 12 0.00042 26.2 5.9 45 470-535 7-51 (52)
298 3k6s_A Integrin alpha-X; cell 70.5 64 0.0022 38.6 16.1 185 48-237 335-545 (1095)
299 2xzm_R RACK1; ribosome, transl 69.9 88 0.003 30.8 22.4 144 107-288 87-244 (343)
300 3cve_A Homer protein homolog 1 69.8 24 0.00082 27.9 8.1 59 471-534 5-68 (72)
301 1cxz_B Protein (PKN); protein- 69.6 13 0.00045 30.4 6.8 60 476-535 21-83 (86)
302 3cvf_A Homer-3, homer protein 69.3 22 0.00077 28.6 8.0 54 474-534 14-74 (79)
303 2pms_C Pneumococcal surface pr 68.9 10 0.00035 33.3 6.4 51 518-574 64-120 (125)
304 2dq0_A Seryl-tRNA synthetase; 68.3 16 0.00054 39.4 9.3 42 510-551 71-113 (455)
305 3s4r_A Vimentin; alpha-helix, 68.1 20 0.0007 29.7 7.9 23 469-491 12-34 (93)
306 2p9w_A MAL S 1 allergenic prot 68.0 46 0.0016 34.2 12.3 142 56-219 147-305 (334)
307 2hz6_A Endoplasmic reticulum t 67.5 1.1 3.7E-05 46.5 -0.1 147 49-239 1-156 (369)
308 2fp8_A Strictosidine synthase; 67.2 98 0.0033 30.3 17.2 140 73-235 165-314 (322)
309 3k6s_A Integrin alpha-X; cell 67.0 1.1E+02 0.0036 36.7 16.9 189 97-289 333-542 (1095)
310 4a5s_A Dipeptidyl peptidase 4 67.0 88 0.003 35.0 15.8 106 15-139 37-147 (740)
311 1cii_A Colicin IA; bacteriocin 66.8 18 0.00061 38.4 8.8 66 466-535 339-411 (602)
312 1wle_A Seryl-tRNA synthetase; 66.8 20 0.00069 39.0 9.8 41 511-551 119-160 (501)
313 2xu6_A MDV1 coiled coil; prote 66.5 18 0.0006 28.6 6.6 50 508-571 21-70 (72)
314 3dw8_B Serine/threonine-protei 66.4 95 0.0032 31.3 14.7 71 209-290 188-260 (447)
315 1ses_A Seryl-tRNA synthetase; 66.4 18 0.00062 38.5 9.2 67 485-551 40-108 (421)
316 3s4r_A Vimentin; alpha-helix, 65.5 14 0.00047 30.8 6.4 40 555-601 54-93 (93)
317 1gen_A Gelatinase A; hydrolase 65.2 97 0.0033 29.5 16.5 153 50-236 34-204 (218)
318 2k48_A Nucleoprotein; viral pr 64.8 21 0.00072 30.1 7.2 33 470-502 32-64 (107)
319 2v71_A Nuclear distribution pr 64.6 59 0.002 30.5 11.2 79 465-543 41-123 (189)
320 3mq9_A Bone marrow stromal ant 63.4 25 0.00087 37.4 9.9 64 465-528 372-449 (471)
321 2eqb_B RAB guanine nucleotide 63.3 19 0.00064 30.2 6.7 16 511-526 43-58 (97)
322 3hxj_A Pyrrolo-quinoline quino 63.2 1.1E+02 0.0037 29.4 14.5 177 2-238 110-289 (330)
323 4h5i_A Guanine nucleotide-exch 62.1 1.3E+02 0.0045 30.0 22.8 156 107-290 144-302 (365)
324 3oyo_A Hemopexin fold protein 62.1 1.1E+02 0.0039 29.2 16.7 148 55-233 12-197 (225)
325 3vu4_A KMHSV2; beta-propeller 61.9 1.3E+02 0.0045 29.9 24.3 65 158-235 206-272 (355)
326 3qne_A Seryl-tRNA synthetase, 61.8 24 0.00081 38.3 9.1 41 511-551 74-115 (485)
327 3iv1_A Tumor susceptibility ge 61.7 27 0.00094 28.0 7.1 56 482-537 20-75 (78)
328 3bas_A Myosin heavy chain, str 61.5 15 0.00051 30.3 5.8 43 474-516 15-57 (89)
329 1go4_E MAD1 (mitotic arrest de 60.8 24 0.0008 29.8 6.9 75 509-606 13-96 (100)
330 3hrp_A Uncharacterized protein 60.7 1.6E+02 0.0054 30.4 26.8 151 56-235 141-299 (409)
331 4d9s_A UVB-resistance protein 60.5 1.6E+02 0.0054 30.4 18.4 16 202-217 287-303 (406)
332 3efg_A Protein SLYX homolog; x 60.5 5.3 0.00018 32.2 2.8 35 559-607 30-64 (78)
333 3swk_A Vimentin; cytoskeleton, 60.2 29 0.001 28.3 7.3 54 471-524 5-58 (86)
334 1sqj_A OXG-RCBH, oligoxylogluc 59.6 2.4E+02 0.0081 32.1 29.0 258 15-294 38-339 (789)
335 1su3_A Interstitial collagenas 59.3 88 0.003 33.4 13.1 151 102-290 267-434 (450)
336 3sre_A PON1, serum paraoxonase 59.1 1.6E+02 0.0056 30.1 16.6 164 56-234 60-252 (355)
337 2zqm_A Prefoldin beta subunit 57.9 47 0.0016 28.0 8.8 33 469-501 16-48 (117)
338 2xzr_A Immunoglobulin-binding 57.1 55 0.0019 27.1 8.2 68 486-567 29-107 (114)
339 2dq3_A Seryl-tRNA synthetase; 56.6 15 0.00053 39.0 6.5 68 484-551 41-112 (425)
340 2oaj_A Protein SNI1; WD40 repe 56.4 2.8E+02 0.0095 31.9 25.3 194 56-290 28-244 (902)
341 2ic6_A Nucleocapsid protein; h 55.9 32 0.0011 27.6 6.5 29 474-502 6-34 (78)
342 2no2_A HIP-I, huntingtin-inter 55.5 78 0.0027 26.9 9.5 6 562-567 73-78 (107)
343 2fxo_A Myosin heavy chain, car 55.5 30 0.001 30.4 7.2 59 468-526 64-122 (129)
344 1itv_A MMP9; adaptive molecula 55.4 1E+02 0.0034 28.8 11.4 110 153-289 11-128 (195)
345 2b9c_A Striated-muscle alpha t 54.9 32 0.0011 31.0 7.3 66 470-535 42-107 (147)
346 2e7s_A RAB guanine nucleotide 54.8 24 0.00084 31.3 6.3 82 478-566 44-133 (135)
347 2xe4_A Oligopeptidase B; hydro 54.1 2.7E+02 0.0094 31.2 20.0 143 72-232 246-398 (751)
348 3m0c_C LDL receptor, low-densi 53.8 3E+02 0.01 31.5 29.3 190 56-290 435-634 (791)
349 4gq1_A NUP37; propeller, trans 53.7 1.9E+02 0.0064 29.1 16.3 66 107-187 155-221 (393)
350 2p4o_A Hypothetical protein; p 53.7 1.6E+02 0.0056 28.5 20.8 156 50-234 35-198 (306)
351 3k29_A Putative uncharacterize 53.6 54 0.0019 30.1 8.5 84 465-549 70-159 (169)
352 1fxk_A Prefoldin; archaeal pro 53.4 94 0.0032 25.7 9.8 39 507-545 7-45 (107)
353 4emc_A Monopolin complex subun 53.4 32 0.0011 32.2 7.1 63 473-535 20-85 (190)
354 1dip_A Delta-sleep-inducing pe 53.3 4 0.00014 32.2 0.9 31 521-565 14-44 (78)
355 1fxk_A Prefoldin; archaeal pro 53.1 63 0.0021 26.8 8.6 32 469-500 11-42 (107)
356 3ljm_A Coil Ser L9C; de novo d 52.9 22 0.00075 22.4 4.0 24 512-535 5-28 (31)
357 3lss_A Seryl-tRNA synthetase; 52.7 42 0.0014 36.3 9.1 33 519-551 115-148 (484)
358 3ter_A Mammalian stromal inter 52.4 50 0.0017 29.3 7.8 56 509-574 53-114 (136)
359 3sjl_D Methylamine dehydrogena 52.3 2.2E+02 0.0076 29.5 21.6 74 208-292 290-367 (386)
360 2xe4_A Oligopeptidase B; hydro 51.7 1.8E+02 0.006 32.8 14.8 120 55-192 329-466 (751)
361 4dk0_A Putative MACA; alpha-ha 51.7 49 0.0017 33.7 9.3 66 470-535 67-142 (369)
362 4fla_A Regulation of nuclear P 51.3 1.4E+02 0.0048 27.0 11.5 67 507-580 64-130 (152)
363 2zvf_A Alanyl-tRNA synthetase; 50.6 24 0.00081 32.2 6.0 68 508-582 32-105 (171)
364 2p22_A Suppressor protein STP2 50.2 98 0.0034 28.7 9.9 68 467-534 21-89 (174)
365 2i1j_A Moesin; FERM, coiled-co 49.7 7.6 0.00026 43.2 2.8 23 552-574 435-457 (575)
366 4hvt_A Ritya.17583.B, post-pro 49.4 3.3E+02 0.011 30.7 19.0 104 122-239 267-386 (711)
367 1d7m_A Cortexillin I; coiled-c 49.1 68 0.0023 26.2 7.5 79 473-572 18-96 (101)
368 2eqb_B RAB guanine nucleotide 48.8 45 0.0015 27.9 6.6 80 511-603 15-94 (97)
369 1n7d_A LDL receptor, low-densi 48.7 1.8E+02 0.0062 32.6 14.1 219 15-290 387-616 (699)
370 1wt6_A Myotonin-protein kinase 48.7 65 0.0022 25.9 7.2 53 475-534 19-71 (81)
371 2ic9_A Nucleocapsid protein; h 48.4 42 0.0014 27.9 6.3 27 475-501 7-33 (96)
372 1hxn_A Hemopexin, HPX; heme, b 47.7 1.9E+02 0.0065 27.5 12.5 146 51-233 22-196 (219)
373 3tc9_A Hypothetical hydrolase; 47.5 1.4E+02 0.0049 31.1 12.3 144 56-233 149-300 (430)
374 1n7d_A LDL receptor, low-densi 47.3 1.3E+02 0.0046 33.7 12.7 150 55-236 463-616 (699)
375 3fpp_A Macrolide-specific effl 47.2 23 0.00077 35.9 5.8 34 470-503 66-99 (341)
376 2jee_A YIIU; FTSZ, septum, coi 46.9 1.1E+02 0.0039 24.6 9.0 69 466-534 6-74 (81)
377 2efk_A CDC42-interacting prote 46.4 96 0.0033 30.5 10.3 23 484-506 120-142 (301)
378 1fxk_C Protein (prefoldin); ar 46.1 1.2E+02 0.0041 26.3 9.6 85 474-573 2-125 (133)
379 3ba0_A Macrophage metalloelast 45.9 2.7E+02 0.0091 28.6 13.8 153 103-290 186-352 (365)
380 3sjl_D Methylamine dehydrogena 45.6 96 0.0033 32.3 10.4 78 106-193 290-372 (386)
381 1m1j_C Fibrinogen gamma chain; 45.5 21 0.00073 37.7 5.3 35 466-500 24-58 (409)
382 2ocy_A RAB guanine nucleotide 45.0 67 0.0023 29.2 7.7 67 475-541 53-127 (154)
383 2j04_A TAU60, YPL007P, hypothe 44.7 3.6E+02 0.012 29.8 17.0 148 107-290 96-256 (588)
384 1gen_A Gelatinase A; hydrolase 44.3 2.1E+02 0.0073 27.0 15.6 154 102-290 35-204 (218)
385 2ke4_A CDC42-interacting prote 44.3 53 0.0018 27.5 6.5 64 472-535 14-82 (98)
386 3kci_A Probable E3 ubiquitin-p 44.2 2.7E+02 0.0093 28.3 15.4 18 151-168 223-240 (389)
387 3qh9_A Liprin-beta-2; coiled-c 43.9 1.2E+02 0.004 24.4 8.0 59 473-531 19-77 (81)
388 2j04_A TAU60, YPL007P, hypothe 43.5 3.7E+02 0.013 29.6 20.5 180 56-276 96-290 (588)
389 2lw1_A ABC transporter ATP-bin 43.1 63 0.0021 26.3 6.8 27 504-530 59-85 (89)
390 3a0f_A Xyloglucanase; beta-pro 42.9 4.1E+02 0.014 29.9 26.7 210 15-241 44-291 (763)
391 1jof_A Carboxy-CIS,CIS-muconat 42.5 2.6E+02 0.0089 27.6 16.3 32 158-189 265-297 (365)
392 2p9w_A MAL S 1 allergenic prot 42.3 2.9E+02 0.01 28.1 23.9 161 107-288 147-323 (334)
393 2oit_A Nucleoporin 214KDA; NH2 42.0 3.1E+02 0.011 28.3 19.7 59 108-183 162-222 (434)
394 3uux_B Mitochondrial division 41.9 1.4E+02 0.0048 29.0 9.8 58 470-534 160-224 (242)
395 1l8d_A DNA double-strand break 41.7 1E+02 0.0035 25.8 8.2 12 565-576 65-76 (112)
396 3tnu_B Keratin, type II cytosk 41.3 87 0.003 27.3 7.9 35 469-503 46-80 (129)
397 1d7m_A Cortexillin I; coiled-c 41.3 1.5E+02 0.005 24.3 9.4 66 472-537 31-96 (101)
398 3ghg_A Fibrinogen alpha chain; 41.3 28 0.00096 37.6 5.3 70 466-535 50-123 (562)
399 3vp9_A General transcriptional 41.1 16 0.00054 30.4 2.7 46 511-566 39-84 (92)
400 3oyo_A Hemopexin fold protein 41.1 2.4E+02 0.0083 26.8 12.5 66 209-288 127-198 (225)
401 3v65_B Low-density lipoprotein 41.0 3E+02 0.01 27.9 27.4 218 14-290 96-320 (386)
402 2zdi_C Prefoldin subunit alpha 40.7 22 0.00077 32.0 4.0 116 481-602 3-143 (151)
403 1m1j_B Fibrinogen beta chain; 40.7 1.6E+02 0.0054 31.6 11.1 16 556-571 167-182 (464)
404 4e81_A Chaperone protein DNAK; 40.3 1.1E+02 0.0036 29.3 9.0 37 522-574 172-208 (219)
405 2cly_A ATP synthase B chain, m 40.2 43 0.0015 32.2 6.0 13 561-573 173-185 (214)
406 2oaj_A Protein SNI1; WD40 repe 40.2 4.8E+02 0.016 29.9 28.3 201 57-286 69-310 (902)
407 3mq7_A Bone marrow stromal ant 40.1 96 0.0033 26.7 7.4 18 484-501 29-46 (121)
408 3teq_A Stromal interaction mol 39.1 76 0.0026 26.7 6.6 57 507-574 20-81 (101)
409 3err_A Fusion protein of micro 39.0 1.4E+02 0.0049 32.6 10.8 86 466-551 32-217 (536)
410 1cii_A Colicin IA; bacteriocin 38.8 1.2E+02 0.0041 32.3 9.4 51 473-523 363-413 (602)
411 2jee_A YIIU; FTSZ, septum, coi 37.4 1.1E+02 0.0037 24.7 7.0 53 469-521 23-75 (81)
412 3he4_A Synzip6; heterodimeric 37.4 4.5 0.00016 28.8 -1.0 11 552-562 33-43 (56)
413 3haj_A Human pacsin2 F-BAR; pa 37.4 1.6E+02 0.0055 31.5 10.9 13 522-534 185-197 (486)
414 3bas_A Myosin heavy chain, str 37.3 1.7E+02 0.0057 23.8 9.1 48 486-533 13-60 (89)
415 3lp9_A LS-24; SEED albumin, pl 37.2 1.3E+02 0.0045 28.8 9.2 147 56-235 15-202 (227)
416 3v65_B Low-density lipoprotein 37.1 3.5E+02 0.012 27.4 23.3 146 55-233 169-317 (386)
417 3q8t_A Beclin-1; autophagy, AT 37.1 75 0.0026 26.4 6.4 58 506-577 23-80 (96)
418 3m0c_C LDL receptor, low-densi 37.1 5.2E+02 0.018 29.4 22.3 147 55-234 481-632 (791)
419 1p9i_A Cortexillin I/GCN4 hybr 37.0 44 0.0015 21.0 3.5 16 487-502 2-17 (31)
420 3cl3_D NF-kappa-B essential mo 36.9 7.7 0.00026 34.0 0.2 29 507-535 8-36 (130)
421 3tnu_A Keratin, type I cytoske 36.7 1.1E+02 0.0039 26.6 7.9 37 468-504 47-83 (131)
422 2i1j_A Moesin; FERM, coiled-co 36.5 18 0.00062 40.1 3.2 16 589-604 515-530 (575)
423 1gk4_A Vimentin; intermediate 36.4 1E+02 0.0034 24.8 6.9 31 474-504 2-32 (84)
424 2v4h_A NF-kappa-B essential mo 36.3 67 0.0023 27.4 5.8 35 488-522 25-59 (110)
425 1ck7_A Protein (gelatinase A); 36.3 2.3E+02 0.0078 31.6 12.0 154 50-235 447-616 (631)
426 3mq9_A Bone marrow stromal ant 36.2 90 0.0031 33.0 8.6 56 465-520 396-455 (471)
427 4dk0_A Putative MACA; alpha-ha 35.8 33 0.0011 35.1 4.8 40 469-511 62-101 (369)
428 3nmd_A CGMP dependent protein 35.8 1.2E+02 0.0043 23.8 6.9 25 556-580 46-70 (72)
429 2wt7_A Proto-oncogene protein 35.7 1.4E+02 0.0048 22.5 7.3 35 500-534 8-42 (63)
430 3vu4_A KMHSV2; beta-propeller 35.4 3.3E+02 0.011 26.7 22.8 187 56-290 70-273 (355)
431 1jof_A Carboxy-CIS,CIS-muconat 35.0 3.4E+02 0.012 26.7 16.2 29 109-138 268-297 (365)
432 2xnx_M M protein, M1-BC1; cell 34.6 2.1E+02 0.0072 25.5 9.1 22 550-571 115-136 (146)
433 2w83_C C-JUN-amino-terminal ki 34.5 67 0.0023 25.5 5.2 50 469-519 20-69 (77)
434 3bbp_D GRIP and coiled-coil do 34.4 27 0.00091 27.2 2.8 27 514-540 42-68 (71)
435 1g6u_A Domain swapped dimer; d 34.3 97 0.0033 21.3 5.3 8 511-518 30-37 (48)
436 1l8d_A DNA double-strand break 34.2 2E+02 0.0069 23.9 9.5 72 469-540 13-96 (112)
437 3fhn_A Protein transport prote 34.0 1.4E+02 0.0046 33.9 9.7 93 473-570 17-131 (706)
438 1z68_A Fibroblast activation p 34.0 3.8E+02 0.013 29.2 13.7 108 72-190 336-449 (719)
439 4fi5_A Nucleoprotein; structur 33.9 1.6E+02 0.0054 25.1 7.7 27 475-501 24-50 (113)
440 1t2k_D Cyclic-AMP-dependent tr 33.5 1.5E+02 0.005 22.2 7.0 25 500-524 7-31 (61)
441 3iox_A AGI/II, PA; alpha helix 33.3 1.9E+02 0.0065 31.1 10.1 35 465-499 26-60 (497)
442 2wt7_B Transcription factor MA 33.0 1.9E+02 0.0066 23.7 8.0 41 494-534 48-88 (90)
443 2zqm_A Prefoldin beta subunit 32.9 2E+02 0.007 23.9 8.8 85 508-606 13-112 (117)
444 1gd2_E Transcription factor PA 32.7 59 0.002 25.5 4.7 21 555-575 48-68 (70)
445 4d9s_A UVB-resistance protein 32.5 4.2E+02 0.014 27.0 18.1 18 150-167 182-199 (406)
446 3v64_C Agrin; beta propeller, 32.4 3.9E+02 0.013 26.6 24.3 146 55-233 126-274 (349)
447 3t98_B Nucleoporin NUP58/NUP45 32.1 1.9E+02 0.0064 23.9 7.9 70 466-536 12-86 (93)
448 2b5u_A Colicin E3; high resolu 31.8 65 0.0022 34.6 6.2 54 466-519 388-441 (551)
449 2oto_A M protein; helical coil 31.7 2.3E+02 0.0078 25.3 9.3 8 527-534 98-105 (155)
450 2b5u_A Colicin E3; high resolu 31.3 4.6E+02 0.016 28.2 12.5 90 483-573 317-418 (551)
451 3iyk_A VP5; icosahedral virus; 31.2 67 0.0023 34.5 6.2 40 486-525 92-131 (526)
452 1jnm_A Proto-oncogene C-JUN; B 31.2 1.1E+02 0.0038 23.0 6.0 34 501-534 8-48 (62)
453 4fla_A Regulation of nuclear P 30.5 1.4E+02 0.0048 26.9 7.5 29 515-543 114-142 (152)
454 3tnu_A Keratin, type I cytoske 30.3 1E+02 0.0034 27.0 6.4 28 554-581 74-101 (131)
455 1t3j_A Mitofusin 1; coiled coi 30.2 55 0.0019 27.3 4.3 27 520-546 52-78 (96)
456 1hjb_A Ccaat/enhancer binding 30.1 1.6E+02 0.0054 24.1 7.0 14 555-568 62-75 (87)
457 2ke4_A CDC42-interacting prote 29.9 1.7E+02 0.0057 24.4 7.3 60 510-574 17-79 (98)
458 3iv1_A Tumor susceptibility ge 29.4 2.2E+02 0.0074 22.8 7.6 57 485-541 16-72 (78)
459 1gqe_A Release factor 2, RF2; 29.3 1.9E+02 0.0064 30.0 9.1 15 557-571 101-115 (365)
460 3fga_D Shugoshin-like 1; PP2A, 29.2 64 0.0022 23.0 3.8 27 504-530 2-29 (47)
461 1x79_B RAB GTPase binding effe 28.9 2.7E+02 0.0093 23.8 8.5 45 491-535 10-58 (112)
462 2v66_B Nuclear distribution pr 28.6 2.7E+02 0.0094 23.7 10.2 64 472-538 2-65 (111)
463 1t3u_A Conserved hypothetical 28.5 1.9E+02 0.0063 23.9 7.6 63 468-534 32-94 (104)
464 2lw1_A ABC transporter ATP-bin 28.3 85 0.0029 25.5 5.2 58 480-541 22-82 (89)
465 1f5n_A Interferon-induced guan 27.8 3.1E+02 0.01 30.3 11.2 34 486-519 486-519 (592)
466 1ck7_A Protein (gelatinase A); 27.8 1.9E+02 0.0065 32.3 9.5 157 102-290 448-617 (631)
467 4dyl_A Tyrosine-protein kinase 27.8 2.9E+02 0.01 28.7 10.7 41 565-612 360-400 (406)
468 1ykh_B RNA polymerase II holoe 27.4 1.3E+02 0.0043 26.5 6.5 47 488-534 75-125 (132)
469 3v4v_A Integrin alpha-4; cell 27.4 1.1E+02 0.0039 33.8 7.7 133 150-286 167-311 (597)
470 3htk_A Structural maintenance 27.4 1.7E+02 0.0057 21.6 6.4 22 489-510 28-49 (60)
471 3tnu_B Keratin, type II cytosk 27.3 1.2E+02 0.0042 26.3 6.4 28 554-581 72-99 (129)
472 3sre_A PON1, serum paraoxonase 27.2 5.1E+02 0.017 26.3 19.8 151 123-288 82-252 (355)
473 1u5p_A Spectrin alpha chain, b 27.0 3.3E+02 0.011 24.8 10.0 20 559-578 144-163 (216)
474 1npe_A Nidogen, entactin; glyc 27.0 3.9E+02 0.013 24.9 26.5 196 50-291 39-241 (267)
475 1zbt_A RF-1, peptide chain rel 26.7 91 0.0031 32.4 6.2 19 474-492 18-36 (371)
476 2l5g_B Putative uncharacterize 26.6 1.2E+02 0.004 21.3 4.7 22 514-535 8-29 (42)
477 4a5s_A Dipeptidyl peptidase 4 26.5 6.7E+02 0.023 27.5 19.4 201 74-289 229-450 (740)
478 4hw6_A Hypothetical protein, I 26.5 3.9E+02 0.013 27.7 11.5 145 57-233 153-303 (433)
479 3ibp_A Chromosome partition pr 26.4 1.1E+02 0.0039 30.6 6.6 86 497-586 6-94 (302)
480 1deq_A Fibrinogen (alpha chain 26.4 65 0.0022 33.5 4.9 92 508-600 53-162 (390)
481 2wt7_A Proto-oncogene protein 26.4 67 0.0023 24.4 3.9 28 507-534 22-49 (63)
482 3ol1_A Vimentin; structural ge 26.0 3.1E+02 0.011 23.4 9.0 45 492-536 60-104 (119)
483 1fmh_A General control protein 25.8 97 0.0033 19.7 3.8 11 552-562 17-27 (33)
484 4dzn_A Coiled-coil peptide CC- 25.8 97 0.0033 19.7 3.8 23 513-535 7-29 (33)
485 1ijq_A LDL receptor, low-densi 25.6 4.7E+02 0.016 25.4 23.5 184 14-236 52-240 (316)
486 2l5g_B Putative uncharacterize 25.4 54 0.0019 23.0 2.8 31 507-537 8-38 (42)
487 3iyn_Q Protein IX, PIX, hexon- 25.2 59 0.002 28.2 3.7 33 468-500 93-125 (140)
488 3kci_A Probable E3 ubiquitin-p 25.2 5.4E+02 0.019 26.0 18.0 18 150-167 168-185 (389)
489 2qyw_A Vesicle transport throu 25.1 1.3E+02 0.0045 25.1 5.9 45 487-531 56-101 (102)
490 1kd8_B GABH BLL, GCN4 acid bas 25.0 88 0.003 21.1 3.6 10 513-522 6-15 (36)
491 1wfd_A Hypothetical protein 15 24.8 1.8E+02 0.0063 23.6 6.7 48 487-534 29-82 (93)
492 2f1m_A Acriflavine resistance 24.8 2.6E+02 0.0088 26.9 9.1 9 556-564 177-185 (277)
493 3c7x_A Matrix metalloproteinas 24.3 4.2E+02 0.014 24.4 11.6 107 55-186 60-177 (196)
494 3dw8_B Serine/threonine-protei 24.3 5.3E+02 0.018 25.5 23.1 64 211-288 240-315 (447)
495 1wle_A Seryl-tRNA synthetase; 24.2 1.4E+02 0.0049 32.2 7.6 24 509-532 124-147 (501)
496 4h22_A Leucine-rich repeat fli 24.2 1.1E+02 0.0039 25.7 5.2 10 557-566 72-81 (103)
497 3thf_A Protein shroom; coiled- 24.2 2.6E+02 0.0088 26.1 8.1 70 472-544 100-181 (190)
498 1lwu_C Fibrinogen gamma chain; 24.1 1E+02 0.0036 31.4 6.0 28 508-535 26-53 (323)
499 2z0v_A SH3-containing GRB2-lik 24.0 1.9E+02 0.0064 27.8 7.7 82 472-573 91-181 (240)
500 2dq0_A Seryl-tRNA synthetase; 23.7 1.1E+02 0.0037 32.7 6.4 67 477-543 28-97 (455)
No 1
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=5.1e-41 Score=347.24 Aligned_cols=260 Identities=17% Similarity=0.224 Sum_probs=232.0
Q ss_pred CEEEecCCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEEC
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDT 80 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~ 80 (617)
||+|||... .+++++||+.+++|..+++ +| .+|.+|+++.++++||||||.. ....+++++||+
T Consensus 14 l~~~GG~~~---~~~~~~~d~~~~~W~~~~~----------~p-~~r~~~~~~~~~~~lyv~GG~~--~~~~~~~~~~d~ 77 (306)
T 3ii7_A 14 RIALFGGSQ---PQSCRYFNPKDYSWTDIRC----------PF-EKRRDAACVFWDNVVYILGGSQ--LFPIKRMDCYNV 77 (306)
T ss_dssp EEEEECCSS---TTSEEEEETTTTEEEECCC----------CS-CCCBSCEEEEETTEEEEECCBS--SSBCCEEEEEET
T ss_pred EEEEeCCCC---CceEEEecCCCCCEecCCC----------CC-cccceeEEEEECCEEEEEeCCC--CCCcceEEEEeC
Confidence 689999765 7899999999999999976 33 3567899999999999999986 556789999999
Q ss_pred CCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCc
Q 007111 81 ETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDK 160 (617)
Q Consensus 81 ~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~ 160 (617)
.+++|..++ ++|.+|.+|+++.++++||++||.+.....++++++||+.+++|+.+ +++|.+|++|+++.++++
T Consensus 78 ~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~---~~~p~~r~~~~~~~~~~~ 151 (306)
T 3ii7_A 78 VKDSWYSKL---GPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTK---PSMLTQRCSHGMVEANGL 151 (306)
T ss_dssp TTTEEEEEE---CCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE---CCCSSCCBSCEEEEETTE
T ss_pred CCCeEEECC---CCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC---CCCcCCcceeEEEEECCE
Confidence 999999998 79999999999999999999999985555789999999999999998 489999999999999998
Q ss_pred EEEEEccCCCCCC----CCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCc
Q 007111 161 NLLIFGGSSKSKT----LNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 161 ~LyV~GG~~~~~~----~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
|||+||...... .+++++||+.+++|+.+..+ |.+|.+|+++.++++|||+||.+.....+++++||+.+++
T Consensus 152 -iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 152 -IYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPM---IEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp -EEEECCEESCTTTCEECCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred -EEEECCCCCCCCcccccceEEEeCCCCCeEEECCCc---cchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence 999999876554 89999999999999999765 8899999999999999999998877778899999999999
Q ss_pred EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCC-CCCeEEEEECCCCccccc
Q 007111 237 WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE-PSNQVEVLSIEKNESSMG 294 (617)
Q Consensus 237 W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~-~~~dV~vyd~~~~~W~~~ 294 (617)
|+.++ ..|.+|.+|+++++. +.|||+||.++. ..+++++||+.+++|...
T Consensus 228 W~~~~----~~p~~r~~~~~~~~~----~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~ 278 (306)
T 3ii7_A 228 WKMVS----PMPWKGVTVKCAAVG----SIVYVLAGFQGVGRLGHILEYNTETDKWVAN 278 (306)
T ss_dssp EEECC----CCSCCBSCCEEEEET----TEEEEEECBCSSSBCCEEEEEETTTTEEEEE
T ss_pred EEECC----CCCCCccceeEEEEC----CEEEEEeCcCCCeeeeeEEEEcCCCCeEEeC
Confidence 99986 356688999999885 889999998765 478999999999999664
No 2
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=4.8e-41 Score=348.69 Aligned_cols=263 Identities=18% Similarity=0.242 Sum_probs=233.2
Q ss_pred CEEEecCCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccC---CCCCCceEEEE
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKT---DSGSDRVSVWT 77 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~---~~~~~~~~v~~ 77 (617)
||||||. ....++++++||+.+++|..++. +| .+|.+|+++.++++||||||.. ......+++|+
T Consensus 27 i~v~GG~-~~~~~~~~~~~d~~~~~W~~~~~----------~p-~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ 94 (308)
T 1zgk_A 27 IYTAGGY-FRQSLSYLEAYNPSNGTWLRLAD----------LQ-VPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDC 94 (308)
T ss_dssp EEEECCB-SSSBCCCEEEEETTTTEEEECCC----------CS-SCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEE
T ss_pred EEEEeCc-CCCCcceEEEEcCCCCeEeECCC----------CC-cccccceEEEECCEEEEECCCcCCCCCCeecceEEE
Confidence 6899998 55678999999999999999975 33 3567899999999999999983 23334678999
Q ss_pred EECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE
Q 007111 78 FDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 157 (617)
Q Consensus 78 yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~ 157 (617)
||+.+++|+.++ ++|.+|.+|+++.++++||++||.+.. ..++++++||+.+++|+.+. ++|.+|++|+++++
T Consensus 95 ~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~ 167 (308)
T 1zgk_A 95 YNPMTNQWSPCA---PMSVPRNRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLVA---PMLTRRIGVGVAVL 167 (308)
T ss_dssp EETTTTEEEECC---CCSSCCBTCEEEEETTEEEEECCEETT-EECCCEEEEETTTTEEEECC---CCSSCCBSCEEEEE
T ss_pred ECCCCCeEeECC---CCCcCccccEEEEECCEEEEEcCCCCC-cccccEEEECCCCCeEeECC---CCCccccceEEEEE
Confidence 999999999998 789999999999999999999998775 36899999999999999984 79999999999999
Q ss_pred CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcE
Q 007111 158 DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEW 237 (617)
Q Consensus 158 ~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W 237 (617)
+++ |||+||.+....++++++||+.+++|+.+..+ |.+|.+|+++.++++|||+||.......+++++||+.+++|
T Consensus 168 ~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 243 (308)
T 1zgk_A 168 NRL-LYAVGGFDGTNRLNSAECYYPERNEWRMITAM---NTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW 243 (308)
T ss_dssp TTE-EEEECCBCSSCBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCE-EEEEeCCCCCCcCceEEEEeCCCCeEeeCCCC---CCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence 888 99999998877799999999999999999765 88999999999999999999998777789999999999999
Q ss_pred EEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCC-CCeEEEEECCCCccccc
Q 007111 238 SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSMG 294 (617)
Q Consensus 238 ~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~-~~dV~vyd~~~~~W~~~ 294 (617)
+.+. ..|.+|.+|+++++. +.|||+||.++.. .+++++||+++++|...
T Consensus 244 ~~~~----~~p~~r~~~~~~~~~----~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 293 (308)
T 1zgk_A 244 TFVA----PMKHRRSALGITVHQ----GRIYVLGGYDGHTFLDSVECYDPDTDTWSEV 293 (308)
T ss_dssp EECC----CCSSCCBSCEEEEET----TEEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred EECC----CCCCCccceEEEEEC----CEEEEEcCcCCCcccceEEEEcCCCCEEeec
Confidence 9986 456788999998885 8899999987654 88999999999999654
No 3
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=2.1e-40 Score=341.96 Aligned_cols=262 Identities=19% Similarity=0.298 Sum_probs=230.5
Q ss_pred CEEEecCCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEEC
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDT 80 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~ 80 (617)
|||+||... ..++++++||+.+++|..++. +| .+|.+|+++.++++||||||... ....+++++||+
T Consensus 18 i~v~GG~~~-~~~~~~~~~d~~~~~W~~~~~----------~p-~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~d~ 84 (302)
T 2xn4_A 18 MVVVGGQAP-KAIRSVECYDFKEERWHQVAE----------LP-SRRCRAGMVYMAGLVFAVGGFNG-SLRVRTVDSYDP 84 (302)
T ss_dssp EEEECCBSS-SBCCCEEEEETTTTEEEEECC----------CS-SCCBSCEEEEETTEEEEESCBCS-SSBCCCEEEEET
T ss_pred EEEECCCCC-CCCCcEEEEcCcCCcEeEccc----------CC-cccccceEEEECCEEEEEeCcCC-CccccceEEECC
Confidence 689999764 467899999999999999975 33 35678999999999999999853 345678999999
Q ss_pred CCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCc
Q 007111 81 ETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDK 160 (617)
Q Consensus 81 ~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~ 160 (617)
.+++|+.++ ++|.+|.+|+++.++++||++||.+... .++++++||+.+++|+.+. ++|.+|++|++++++++
T Consensus 85 ~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~ 157 (302)
T 2xn4_A 85 VKDQWTSVA---NMRDRRSTLGAAVLNGLLYAVGGFDGST-GLSSVEAYNIKSNEWFHVA---PMNTRRSSVGVGVVGGL 157 (302)
T ss_dssp TTTEEEEEC---CCSSCCBSCEEEEETTEEEEEEEECSSC-EEEEEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTE
T ss_pred CCCceeeCC---CCCccccceEEEEECCEEEEEcCCCCCc-cCceEEEEeCCCCeEeecC---CCCCcccCceEEEECCE
Confidence 999999998 7999999999999999999999997753 6899999999999999994 89999999999999998
Q ss_pred EEEEEccCCCC--CCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEE
Q 007111 161 NLLIFGGSSKS--KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWS 238 (617)
Q Consensus 161 ~LyV~GG~~~~--~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~ 238 (617)
|||+||.+.. ..++++++||+.+++|+.+..+ |.+|.+|+++.++++|||+||.+.....+++++||+.+++|+
T Consensus 158 -iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 233 (302)
T 2xn4_A 158 -LYAVGGYDVASRQCLSTVECYNATTNEWTYIAEM---STRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWR 233 (302)
T ss_dssp -EEEECCEETTTTEECCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEE
T ss_pred -EEEEeCCCCCCCccccEEEEEeCCCCcEEECCCC---ccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEe
Confidence 9999998654 3588999999999999999665 889999999999999999999887777789999999999999
Q ss_pred EeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCC-CCeEEEEECCCCccccc
Q 007111 239 VAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSMG 294 (617)
Q Consensus 239 ~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~-~~dV~vyd~~~~~W~~~ 294 (617)
.+. ..|.+|.+|+++++. +.|||+||.++.. .+++++||+++++|...
T Consensus 234 ~~~----~~~~~r~~~~~~~~~----~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 282 (302)
T 2xn4_A 234 QVA----DMNMCRRNAGVCAVN----GLLYVVGGDDGSCNLASVEYYNPTTDKWTVV 282 (302)
T ss_dssp EEC----CCSSCCBSCEEEEET----TEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred eCC----CCCCccccCeEEEEC----CEEEEECCcCCCcccccEEEEcCCCCeEEEC
Confidence 986 345678899988875 8899999987543 78999999999999654
No 4
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.5e-40 Score=340.84 Aligned_cols=263 Identities=20% Similarity=0.280 Sum_probs=233.9
Q ss_pred CEEEec-CCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEE
Q 007111 1 MIVVGG-ESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFD 79 (617)
Q Consensus 1 i~V~GG-~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd 79 (617)
|||+|| ......++++++||+.+++|..++. +|. +|.+|+++.++++||||||.. .....+++++||
T Consensus 17 i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~----------~p~-~r~~~~~~~~~~~l~v~GG~~-~~~~~~~~~~~d 84 (301)
T 2vpj_A 17 LLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPS----------ITR-KRRYVASVSLHDRIYVIGGYD-GRSRLSSVECLD 84 (301)
T ss_dssp EEEECCEETTTEECCCEEEEETTTTEEEECCC----------CSS-CCBSCEEEEETTEEEEECCBC-SSCBCCCEEEEE
T ss_pred EEEEeCccCCCcceeEEEEEcCCCCeEEeCCC----------CCh-hhccccEEEECCEEEEEcCCC-CCccCceEEEEE
Confidence 689999 6666788999999999999999985 333 567899999999999999985 345568999999
Q ss_pred CCCCc---EEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEE
Q 007111 80 TETEC---WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL 156 (617)
Q Consensus 80 ~~t~~---W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~ 156 (617)
+.+++ |+.++ ++|.+|.+|+++.++++||++||.+... .++++++||+.+++|+.+. ++|.+|.+|++++
T Consensus 85 ~~~~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~ 157 (301)
T 2vpj_A 85 YTADEDGVWYSVA---PMNVRRGLAGATTLGDMIYVSGGFDGSR-RHTSMERYDPNIDQWSMLG---DMQTAREGAGLVV 157 (301)
T ss_dssp TTCCTTCCCEEEC---CCSSCCBSCEEEEETTEEEEECCBCSSC-BCCEEEEEETTTTEEEEEE---ECSSCCBSCEEEE
T ss_pred CCCCCCCeeEECC---CCCCCccceeEEEECCEEEEEcccCCCc-ccceEEEEcCCCCeEEECC---CCCCCcccceEEE
Confidence 99999 99997 7899999999999999999999998754 5899999999999999995 7899999999999
Q ss_pred ECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCc
Q 007111 157 YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 157 ~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
++++ ||++||.+.....+++++||+.+++|+.+..+ |.+|.+|+++.++++|||+||.......+++++||+.+++
T Consensus 158 ~~~~-iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 158 ASGV-IYCLGGYDGLNILNSVEKYDPHTGHWTNVTPM---ATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp ETTE-EEEECCBCSSCBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred ECCE-EEEECCCCCCcccceEEEEeCCCCcEEeCCCC---CcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 9988 99999998877899999999999999999654 8899999999999999999999877778899999999999
Q ss_pred EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCC-CCeEEEEECCCCccccc
Q 007111 237 WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSMG 294 (617)
Q Consensus 237 W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~-~~dV~vyd~~~~~W~~~ 294 (617)
|+.++ ..|.+|.+|+++++. +.|||+||.++.. .+++++||+++++|...
T Consensus 234 W~~~~----~~p~~r~~~~~~~~~----~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 284 (301)
T 2vpj_A 234 WTTVT----SMTTPRCYVGATVLR----GRLYAIAGYDGNSLLSSIECYDPIIDSWEVV 284 (301)
T ss_dssp EEEEC----CCSSCCBSCEEEEET----TEEEEECCBCSSSBEEEEEEEETTTTEEEEE
T ss_pred EEECC----CCCCcccceeEEEEC----CEEEEEcCcCCCcccccEEEEcCCCCeEEEc
Confidence 99986 346788899998885 7899999987654 68999999999999653
No 5
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=3.8e-41 Score=350.29 Aligned_cols=259 Identities=17% Similarity=0.219 Sum_probs=224.1
Q ss_pred CEEEecCCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccC----C-CCCCceEE
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKT----D-SGSDRVSV 75 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~----~-~~~~~~~v 75 (617)
||++|| +++++||+.+++|.. +++ ..+.+|.+|+++.++++|||+||.. . .....+++
T Consensus 7 l~~~GG-------~~~~~yd~~~~~W~~-~~~---------~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ 69 (315)
T 4asc_A 7 IFMISE-------EGAVAYDPAANECYC-ASL---------SSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYF 69 (315)
T ss_dssp EEEEET-------TEEEEEETTTTEEEE-EEC---------CCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEE
T ss_pred EEEEcC-------CceEEECCCCCeEec-CCC---------CCCCCccceEEEEECCEEEEEcCcccCCCCCccccccce
Confidence 588999 689999999999986 331 1134678899999999999999962 1 22234569
Q ss_pred EEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCC--CCCccCeEEEEECCCCcEEEeecCCCCCCCCcccE
Q 007111 76 WTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDG--KRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 153 (617)
Q Consensus 76 ~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~--~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~ 153 (617)
++||+.+++|+.++ ++|.+|.+|+++.++++||++||.+. ....++++++||+.+++|+.+. ++|.+|++|+
T Consensus 70 ~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~ 143 (315)
T 4asc_A 70 LQFDHLDSEWLGMP---PLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD---PLPYVVYGHT 143 (315)
T ss_dssp EEEETTTTEEEECC---CBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC---CCSSCCBSCE
T ss_pred EEecCCCCeEEECC---CCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC---CCCCccccee
Confidence 99999999999998 79999999999999999999999763 3457899999999999999984 7999999999
Q ss_pred EEEECCcEEEEEccC-CCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEEC
Q 007111 154 AALYDDKNLLIFGGS-SKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDI 232 (617)
Q Consensus 154 a~~~~~~~LyV~GG~-~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl 232 (617)
+++++++ |||+||. .....++++++||+.+++|+.+..+ |.+|..|+++.++++|||+||.......+++++||+
T Consensus 144 ~~~~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 219 (315)
T 4asc_A 144 VLSHMDL-VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPM---QTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSI 219 (315)
T ss_dssp EEEETTE-EEEECCBCTTSCBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEET
T ss_pred EEEECCE-EEEEeCCCCCCcccceEEEEeCCCCeEEECCCC---CCchhceEEEEECCEEEEEeccCCCCccceEEEEEC
Confidence 9999998 9999999 5667889999999999999999765 889999999999999999999987777889999999
Q ss_pred CCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCC----------CCCCeEEEEECCCCccccc
Q 007111 233 LKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK----------EPSNQVEVLSIEKNESSMG 294 (617)
Q Consensus 233 ~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~----------~~~~dV~vyd~~~~~W~~~ 294 (617)
.+++|+.++ ..|.+|.+|+++++. ++|||+||.++ ...+++++||+++++|+..
T Consensus 220 ~~~~W~~~~----~~p~~r~~~~~~~~~----~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 220 TDNKWAPFE----AFPQERSSLSLVSLV----GTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp TTTEEEEEC----CCSSCCBSCEEEEET----TEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred CCCeEEECC----CCCCcccceeEEEEC----CEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 999999986 356789999999886 78999999853 2368999999999999654
No 6
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=9.7e-40 Score=340.09 Aligned_cols=259 Identities=17% Similarity=0.225 Sum_probs=221.8
Q ss_pred CEEEecCCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCC-----CCCceEE
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDS-----GSDRVSV 75 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~-----~~~~~~v 75 (617)
||++||. ++++||+.+++|...+. ..+.+|.+|+++..+++||||||.... ....+.+
T Consensus 18 i~~~GG~-------~~~~yd~~~~~W~~~~~----------~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ 80 (318)
T 2woz_A 18 ILLVNDT-------AAVAYDPMENECYLTAL----------AEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYF 80 (318)
T ss_dssp EEEECSS-------EEEEEETTTTEEEEEEE----------CTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEE
T ss_pred hhhcccc-------ceEEECCCCCceecccC----------CccCCccceEEEEECCEEEEECCcccCccccCCCccccE
Confidence 5899993 58999999999988432 223467789999999999999996321 1223469
Q ss_pred EEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCC-CCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEE
Q 007111 76 WTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDG-KRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 154 (617)
Q Consensus 76 ~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~-~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a 154 (617)
++||+.+++|..++ ++|.+|.+|+++.++++||++||.+. ....++++++||+.+++|+.+. ++|.+|++|++
T Consensus 81 ~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~ 154 (318)
T 2woz_A 81 FQLDNVSSEWVGLP---PLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK---NLPIKVYGHNV 154 (318)
T ss_dssp EEEETTTTEEEECS---CBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC---CCSSCEESCEE
T ss_pred EEEeCCCCcEEECC---CCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC---CCCCcccccEE
Confidence 99999999999997 79999999999999999999999873 3457899999999999999994 89999999999
Q ss_pred EEECCcEEEEEccCC-CCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECC
Q 007111 155 ALYDDKNLLIFGGSS-KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 233 (617)
Q Consensus 155 ~~~~~~~LyV~GG~~-~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~ 233 (617)
++++++ |||+||.. ....++++++||+.+++|+.+..+ |.+|..|+++.++++|||+||.......+++++||+.
T Consensus 155 ~~~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 230 (318)
T 2woz_A 155 ISHNGM-IYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPM---KTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLK 230 (318)
T ss_dssp EEETTE-EEEECCEESSSCBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETT
T ss_pred EEECCE-EEEEcCCCCCCCccceEEEEcCCCCEEEECCCC---CCCcccceEEEECCEEEEEcCcCCCCccceEEEEECC
Confidence 999988 99999984 456789999999999999999765 8899999999999999999998877677899999999
Q ss_pred CCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCC----------CCCCeEEEEECCCCccccc
Q 007111 234 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK----------EPSNQVEVLSIEKNESSMG 294 (617)
Q Consensus 234 ~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~----------~~~~dV~vyd~~~~~W~~~ 294 (617)
+++|+.+. ..|.+|.+|+++++. +.|||+||.+. ...+++|+||+++++|...
T Consensus 231 ~~~W~~~~----~~p~~r~~~~~~~~~----~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 231 TNKWEVMT----EFPQERSSISLVSLA----GSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp TCCEEECC----CCSSCCBSCEEEEET----TEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred CCeEEECC----CCCCcccceEEEEEC----CEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 99999986 356688999998886 78999999864 2368999999999999653
No 7
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=3.7e-37 Score=319.47 Aligned_cols=251 Identities=17% Similarity=0.239 Sum_probs=212.7
Q ss_pred CCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecC---CCC
Q 007111 44 IPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGED---GKR 120 (617)
Q Consensus 44 ~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~---~~~ 120 (617)
+++|..|+++.++++||+|||. .....+++++||+.+++|..++ ++|.+|.+|+++.++++||++||.. ...
T Consensus 12 ~~~~~~~~~~~~~~~i~v~GG~--~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~ 86 (308)
T 1zgk_A 12 GLVPRGSHAPKVGRLIYTAGGY--FRQSLSYLEAYNPSNGTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGN 86 (308)
T ss_dssp ---------CCCCCCEEEECCB--SSSBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCEEEETTEE
T ss_pred CeeeCCccccCCCCEEEEEeCc--CCCCcceEEEEcCCCCeEeECC---CCCcccccceEEEECCEEEEECCCcCCCCCC
Confidence 4677789999999999999998 3455678999999999999997 7899999999999999999999984 333
Q ss_pred CccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCC
Q 007111 121 RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPR 200 (617)
Q Consensus 121 ~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R 200 (617)
..++++++||+.+++|++++ ++|.+|..|++++++++ |||+||.+....++++++||+.+++|+.+..+ |.+|
T Consensus 87 ~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r 159 (308)
T 1zgk_A 87 TDSSALDCYNPMTNQWSPCA---PMSVPRNRIGVGVIDGH-IYAVGGSHGCIHHNSVERYEPERDEWHLVAPM---LTRR 159 (308)
T ss_dssp EECCCEEEEETTTTEEEECC---CCSSCCBTCEEEEETTE-EEEECCEETTEECCCEEEEETTTTEEEECCCC---SSCC
T ss_pred eecceEEEECCCCCeEeECC---CCCcCccccEEEEECCE-EEEEcCCCCCcccccEEEECCCCCeEeECCCC---Cccc
Confidence 46899999999999999984 89999999999999988 99999998877889999999999999999765 8899
Q ss_pred cceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCC-CC
Q 007111 201 AGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SN 279 (617)
Q Consensus 201 ~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~-~~ 279 (617)
..|+++.++++|||+||.......+++++||+.+++|+.++ ..|.+|.+|+++++. +.|||+||.++.. .+
T Consensus 160 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~----~~p~~r~~~~~~~~~----~~iyv~GG~~~~~~~~ 231 (308)
T 1zgk_A 160 IGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMIT----AMNTIRSGAGVCVLH----NCIYAAGGYDGQDQLN 231 (308)
T ss_dssp BSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECC----CCSSCCBSCEEEEET----TEEEEECCBCSSSBCC
T ss_pred cceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCC----CCCCccccceEEEEC----CEEEEEeCCCCCCccc
Confidence 99999999999999999987777899999999999999986 356789999998885 8899999987544 78
Q ss_pred eEEEEECCCCcccc-------ccccccCccCCceeeeccCCC
Q 007111 280 QVEVLSIEKNESSM-------GRRSTPNAKGPGQLLFEKRSS 314 (617)
Q Consensus 280 dV~vyd~~~~~W~~-------~w~~~~~~~~~~v~vfGG~~~ 314 (617)
++++||+.+++|.. +..+++...++.+++|||..+
T Consensus 232 ~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 232 SVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDG 273 (308)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred eEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcCC
Confidence 99999999999954 233344447899999999754
No 8
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=2.7e-36 Score=311.21 Aligned_cols=235 Identities=17% Similarity=0.238 Sum_probs=210.3
Q ss_pred CEEEecCCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEEC
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDT 80 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~ 80 (617)
|||+||..+...++++++||+.+++|..+++ ++ .+|.+|+++.++++|||+||... ....+++++||+
T Consensus 64 lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~----------~p-~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~d~ 131 (302)
T 2xn4_A 64 VFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN----------MR-DRRSTLGAAVLNGLLYAVGGFDG-STGLSSVEAYNI 131 (302)
T ss_dssp EEEESCBCSSSBCCCEEEEETTTTEEEEECC----------CS-SCCBSCEEEEETTEEEEEEEECS-SCEEEEEEEEET
T ss_pred EEEEeCcCCCccccceEEECCCCCceeeCCC----------CC-ccccceEEEEECCEEEEEcCCCC-CccCceEEEEeC
Confidence 6899999887788999999999999999986 33 35678999999999999999853 445789999999
Q ss_pred CCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCC-CccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECC
Q 007111 81 ETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKR-RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDD 159 (617)
Q Consensus 81 ~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~-~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~ 159 (617)
.+++|+.++ ++|.+|.+|+++.++++||++||.+... ..++++++||+.+++|+.+. ++|.+|++|+++++++
T Consensus 132 ~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~ 205 (302)
T 2xn4_A 132 KSNEWFHVA---PMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIA---EMSTRRSGAGVGVLNN 205 (302)
T ss_dssp TTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETT
T ss_pred CCCeEeecC---CCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECC---CCccccccccEEEECC
Confidence 999999998 7899999999999999999999987653 35899999999999999994 8999999999999998
Q ss_pred cEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEE
Q 007111 160 KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 239 (617)
Q Consensus 160 ~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~ 239 (617)
+ |||+||.++....+++++||+.+++|+.+..+ |.+|.+|+++.++++|||+||.+.....+++++||+.+++|+.
T Consensus 206 ~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 281 (302)
T 2xn4_A 206 L-LYAVGGHDGPLVRKSVEVYDPTTNAWRQVADM---NMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTV 281 (302)
T ss_dssp E-EEEECCBSSSSBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred E-EEEECCCCCCcccceEEEEeCCCCCEeeCCCC---CCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeEEE
Confidence 8 99999998877889999999999999999765 8899999999999999999998877778899999999999999
Q ss_pred eecCCCCCCCCCcceEEEEEe
Q 007111 240 AITSPSSSVTSNKGFTLVLVQ 260 (617)
Q Consensus 240 l~~~~~~~p~~r~~~s~v~v~ 260 (617)
++ ...|.+|..|+++++.
T Consensus 282 ~~---~~~~~~r~~~~~~~~~ 299 (302)
T 2xn4_A 282 VS---SCMSTGRSYAGVTVID 299 (302)
T ss_dssp CS---SCCSSCCBSCEEEEEE
T ss_pred CC---cccCcccccceEEEec
Confidence 75 2456789999998886
No 9
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=5.9e-37 Score=323.62 Aligned_cols=263 Identities=17% Similarity=0.220 Sum_probs=210.7
Q ss_pred CEEEecCCCCCccceEEEEECC--CCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEccc-C---CCCCCceE
Q 007111 1 MIVVGGESGNGLLDDVQVLNFD--RFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGK-T---DSGSDRVS 74 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~--t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~-~---~~~~~~~~ 74 (617)
|||+||..+ +++++||+. +++|..+++ +|..+|.+|++++++++||||||. . ......++
T Consensus 22 iyv~GG~~~----~~~~~~d~~~~~~~W~~~~~----------~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~ 87 (357)
T 2uvk_A 22 VYIGLGSAG----TAWYKLDTQAKDKKWTALAA----------FPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFND 87 (357)
T ss_dssp EEEECGGGT----TCEEEEETTSSSCCEEECCC----------CTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCC
T ss_pred EEEEeCcCC----CeEEEEccccCCCCeeECCC----------CCCCcCccceEEEECCEEEEEcCCCCCCCccceeecc
Confidence 689999764 489999998 499999986 443567899999999999999998 2 12334678
Q ss_pred EEEEECCCCcEEEeeccCCCC-CCcceeEEEEECCEEEEEeecCCCC---------------------------------
Q 007111 75 VWTFDTETECWSVVEAKGDIP-VARSGHTVVRASSVLILFGGEDGKR--------------------------------- 120 (617)
Q Consensus 75 v~~yd~~t~~W~~~~~~g~~P-~~R~~~s~~~~~~~IYv~GG~~~~~--------------------------------- 120 (617)
+|+||+.+++|+.++ +++ .+|.+|++++++++||++||.+...
T Consensus 88 v~~yd~~~~~W~~~~---~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (357)
T 2uvk_A 88 VHKYNPKTNSWVKLM---SHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDY 164 (357)
T ss_dssp EEEEETTTTEEEECS---CCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGG
T ss_pred EEEEeCCCCcEEECC---CCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcccccccc
Confidence 999999999999998 455 8999999999999999999986431
Q ss_pred CccCeEEEEECCCCcEEEeecCCCCCCCC-cccEEEEECCcEEEEEccCCCC-CCCCeEEEEEC--CCCcEEEeecCCCC
Q 007111 121 RKLNDLHMFDLKSLTWLPLHCTGTGPSPR-SNHVAALYDDKNLLIFGGSSKS-KTLNDLYSLDF--ETMIWTRIKIRGFH 196 (617)
Q Consensus 121 ~~~~~v~~yD~~t~~W~~l~~~g~~P~~R-~~h~a~~~~~~~LyV~GG~~~~-~~~n~v~~yD~--~t~~W~~~~~~g~~ 196 (617)
..++++++||+.+++|+.+. ++|.+| ++|++++++++ ||||||.+.. ...++++.||+ .+++|+.+..+ ..
T Consensus 165 ~~~~~v~~yd~~~~~W~~~~---~~p~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~-~~ 239 (357)
T 2uvk_A 165 FFNKFLLSFDPSTQQWSYAG---ESPWYGTAGAAVVNKGDK-TWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPV-SS 239 (357)
T ss_dssp CCCCEEEEEETTTTEEEEEE---ECSSCCCBSCEEEEETTE-EEEECCEEETTEECCCEEEEECC---CEEEECCCS-ST
T ss_pred CCcccEEEEeCCCCcEEECC---CCCCCCcccccEEEECCE-EEEEeeecCCCcccCceEEEEecCCCCcEEecCCC-CC
Confidence 24689999999999999994 688765 45999999988 9999998643 45788999987 99999999876 23
Q ss_pred CCCCcceEEEEECCEEEEEecCCCC-----------------CccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEE
Q 007111 197 PSPRAGCCGVLCGTKWYIAGGGSRK-----------------KRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLV 259 (617)
Q Consensus 197 P~~R~~ha~v~~~~~IyI~GG~s~~-----------------~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v 259 (617)
|.+|.+|+++.++++|||+||.+.. ....++++||+.+++|+.+.. .|.+|.+|+++++
T Consensus 240 ~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r~~~~~~~~ 315 (357)
T 2uvk_A 240 PDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE----LSQGRAYGVSLPW 315 (357)
T ss_dssp TTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEE----CSSCCBSSEEEEE
T ss_pred CcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCC----CCCCcccceeEEe
Confidence 4457788899999999999996432 234678999999999999863 4568888999887
Q ss_pred eecCCcEEEEEcCCCCCC--CCeEEEEECCCCcccc
Q 007111 260 QHKEKDFLVAFGGIKKEP--SNQVEVLSIEKNESSM 293 (617)
Q Consensus 260 ~~~~~~~L~I~GG~~~~~--~~dV~vyd~~~~~W~~ 293 (617)
. +.||||||++... .++|++|++++++|..
T Consensus 316 ~----~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 316 N----NSLLIIGGETAGGKAVTDSVLITVKDNKVTV 347 (357)
T ss_dssp T----TEEEEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred C----CEEEEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence 5 8899999987543 6899999999999843
No 10
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=5.6e-36 Score=309.40 Aligned_cols=235 Identities=20% Similarity=0.273 Sum_probs=210.4
Q ss_pred CEEEecCCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEEC
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDT 80 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~ 80 (617)
|||+||.. ...++++++||+.+++|..+++ ++ .+|.+|+++.++++|||+||.+......+++++||+
T Consensus 58 lyv~GG~~-~~~~~~~~~~d~~~~~W~~~~~----------~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~ 125 (306)
T 3ii7_A 58 VYILGGSQ-LFPIKRMDCYNVVKDSWYSKLG----------PP-TPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDT 125 (306)
T ss_dssp EEEECCBS-SSBCCEEEEEETTTTEEEEEEC----------CS-SCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEET
T ss_pred EEEEeCCC-CCCcceEEEEeCCCCeEEECCC----------CC-ccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeC
Confidence 68999987 6678999999999999999976 33 457789999999999999999656667789999999
Q ss_pred CCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCC---ccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE
Q 007111 81 ETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRR---KLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 157 (617)
Q Consensus 81 ~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~---~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~ 157 (617)
.+++|+.++ ++|.+|.+|+++.++++||++||.+.... .++++++||+.+++|+.++ ++|.+|++|+++++
T Consensus 126 ~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~ 199 (306)
T 3ii7_A 126 RTESWHTKP---SMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELC---PMIEARKNHGLVFV 199 (306)
T ss_dssp TTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEE
T ss_pred CCCceEeCC---CCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECC---CccchhhcceEEEE
Confidence 999999997 79999999999999999999999876543 3899999999999999995 79999999999999
Q ss_pred CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcE
Q 007111 158 DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEW 237 (617)
Q Consensus 158 ~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W 237 (617)
+++ |||+||.+.....+++++||+.+++|+.+..+ |.+|.+|+++.++++|||+||.+.....+++++||+.+++|
T Consensus 200 ~~~-i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 200 KDK-IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPM---PWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp TTE-EEEECCEETTEEBCCEEEEETTTTEEEECCCC---SCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred CCE-EEEEeCCCCCCCCceEEEeeCCCCcEEECCCC---CCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 988 99999998777889999999999999999665 88999999999999999999998777889999999999999
Q ss_pred EEeecCCCCCCCCCcceEEEEEee
Q 007111 238 SVAITSPSSSVTSNKGFTLVLVQH 261 (617)
Q Consensus 238 ~~l~~~~~~~p~~r~~~s~v~v~~ 261 (617)
+.++. .|.+|.+|+++++..
T Consensus 276 ~~~~~----~~~~r~~~~~~~~~~ 295 (306)
T 3ii7_A 276 VANSK----VRAFPVTSCLICVVD 295 (306)
T ss_dssp EEEEE----EECCSCTTCEEEEEE
T ss_pred EeCCC----cccccceeEEEEECC
Confidence 99873 456888999888763
No 11
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=315.94 Aligned_cols=242 Identities=17% Similarity=0.233 Sum_probs=209.4
Q ss_pred CEEEecCC-----C-CCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCC--CCCCc
Q 007111 1 MIVVGGES-----G-NGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTD--SGSDR 72 (617)
Q Consensus 1 i~V~GG~~-----~-~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~--~~~~~ 72 (617)
|||+||.. . ....+++++||+.+++|..+++ +| .+|.+|+++.++++|||+||... .....
T Consensus 48 iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~----------~p-~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 116 (315)
T 4asc_A 48 VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP----------LP-SPRCLFGLGEALNSIYVVGGREIKDGERCL 116 (315)
T ss_dssp EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC----------BS-SCEESCEEEEETTEEEEECCEESSTTCCBC
T ss_pred EEEEcCcccCCCCCccccccceEEecCCCCeEEECCC----------CC-cchhceeEEEECCEEEEEeCCcCCCCCccc
Confidence 68999952 1 2234569999999999999976 33 46778999999999999999752 34567
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCccc
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 152 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 152 (617)
+++++||+.+++|+.++ ++|.+|.+|+++.++++||++||.+.....++++++||+.+++|+.++ ++|.+|++|
T Consensus 117 ~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~ 190 (315)
T 4asc_A 117 DSVMCYDRLSFKWGESD---PLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA---PMQTARSLF 190 (315)
T ss_dssp CCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECC---CCSSCCBSC
T ss_pred ceEEEECCCCCcEeECC---CCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECC---CCCCchhce
Confidence 89999999999999998 799999999999999999999999665568999999999999999984 799999999
Q ss_pred EEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCC---------Cc
Q 007111 153 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK---------KR 223 (617)
Q Consensus 153 ~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~---------~~ 223 (617)
++++++++ |||+||.+.....+++++||+.+++|+.+..+ |.+|.+|+++.++++|||+||.+.. ..
T Consensus 191 ~~~~~~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~ 266 (315)
T 4asc_A 191 GATVHDGR-IIVAAGVTDTGLTSSAEVYSITDNKWAPFEAF---PQERSSLSLVSLVGTLYAIGGFATLETESGELVPTE 266 (315)
T ss_dssp EEEEETTE-EEEEEEECSSSEEEEEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEE
T ss_pred EEEEECCE-EEEEeccCCCCccceEEEEECCCCeEEECCCC---CCcccceeEEEECCEEEEECCccccCcCCccccccc
Confidence 99999998 99999998877889999999999999999764 8999999999999999999997531 34
Q ss_pred cceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCC
Q 007111 224 HAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI 273 (617)
Q Consensus 224 ~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~ 273 (617)
.+++++||+.+++|+.+. +.+|.+++++++. +.||+++..
T Consensus 267 ~~~v~~yd~~~~~W~~~~------~~~r~~~~~~~~~----~~l~v~~~~ 306 (315)
T 4asc_A 267 LNDIWRYNEEEKKWEGVL------REIAYAAGATFLP----VRLNVLRLT 306 (315)
T ss_dssp EEEEEEEETTTTEEEEEE------SCSSCCSSCEEEE----EEECGGGSE
T ss_pred cCcEEEecCCCChhhhhc------cCCcCccceEEeC----CEEEEEEeh
Confidence 678999999999999983 4468888888887 788887653
No 12
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=6.6e-36 Score=311.13 Aligned_cols=241 Identities=22% Similarity=0.281 Sum_probs=208.2
Q ss_pred CEEEecCCC--C----CccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCC-CCCCce
Q 007111 1 MIVVGGESG--N----GLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTD-SGSDRV 73 (617)
Q Consensus 1 i~V~GG~~~--~----~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~-~~~~~~ 73 (617)
|||+||... . ...+++++||+.+++|..+++ +|. +|.+|+++.++++|||+||... .....+
T Consensus 59 lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~----------~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 127 (318)
T 2woz_A 59 VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP----------LPS-ARCLFGLGEVDDKIYVVAGKDLQTEASLD 127 (318)
T ss_dssp EEEEESSCC-------CCCBEEEEEETTTTEEEECSC----------BSS-CBCSCEEEEETTEEEEEEEEBTTTCCEEE
T ss_pred EEEECCcccCccccCCCccccEEEEeCCCCcEEECCC----------CCc-cccccceEEECCEEEEEcCccCCCCcccc
Confidence 689999531 1 133469999999999999976 333 5678999999999999999863 345578
Q ss_pred EEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccE
Q 007111 74 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 153 (617)
Q Consensus 74 ~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~ 153 (617)
++++||+.+++|+.++ ++|.+|.+|++++++++||++||.+.....++++++||+.+++|+.++ ++|.+|..|+
T Consensus 128 ~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~ 201 (318)
T 2woz_A 128 SVLCYDPVAAKWSEVK---NLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLA---PMKTPRSMFG 201 (318)
T ss_dssp EEEEEETTTTEEEEEC---CCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEEC---CCSSCCBSCE
T ss_pred eEEEEeCCCCCEeECC---CCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECC---CCCCCcccce
Confidence 9999999999999998 789999999999999999999998766567899999999999999994 7999999999
Q ss_pred EEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCC---------Ccc
Q 007111 154 AALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK---------KRH 224 (617)
Q Consensus 154 a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~---------~~~ 224 (617)
+++++++ |||+||.+.....+++++||+.+++|+.+..+ |.+|.+|+++.++++|||+||.... ...
T Consensus 202 ~~~~~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~ 277 (318)
T 2woz_A 202 VAIHKGK-IVIAGGVTEDGLSASVEAFDLKTNKWEVMTEF---PQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEV 277 (318)
T ss_dssp EEEETTE-EEEEEEEETTEEEEEEEEEETTTCCEEECCCC---SSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBC
T ss_pred EEEECCE-EEEEcCcCCCCccceEEEEECCCCeEEECCCC---CCcccceEEEEECCEEEEECCeeccCCCCceecccee
Confidence 9999998 99999998777789999999999999999765 8899999999999999999998642 346
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcC
Q 007111 225 AETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGG 272 (617)
Q Consensus 225 ~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG 272 (617)
+++|+||+.+++|+.+ .|.+|.+|+++++. ++|||+..
T Consensus 278 ~~v~~yd~~~~~W~~~------~~~~r~~~~~~~~~----~~iyi~~~ 315 (318)
T 2woz_A 278 NDIWKYEDDKKEWAGM------LKEIRYASGASCLA----TRLNLFKL 315 (318)
T ss_dssp CCEEEEETTTTEEEEE------ESCCGGGTTCEEEE----EEEEGGGC
T ss_pred eeEEEEeCCCCEehhh------cccccccccceeeC----CEEEEEEe
Confidence 8899999999999998 24578899998887 78887653
No 13
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=3e-35 Score=302.93 Aligned_cols=233 Identities=22% Similarity=0.386 Sum_probs=209.0
Q ss_pred CEEEecCCCCCccceEEEEECCCCc---EEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEE
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFS---WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 77 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~---W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~ 77 (617)
|||+||..+...++++++||+.+++ |..+++ ++ .+|.+|+++.++++|||+||... ....+++++
T Consensus 65 l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~----------~p-~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~ 132 (301)
T 2vpj_A 65 IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAP----------MN-VRRGLAGATTLGDMIYVSGGFDG-SRRHTSMER 132 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTCCTTCCCEEECC----------CS-SCCBSCEEEEETTEEEEECCBCS-SCBCCEEEE
T ss_pred EEEEcCCCCCccCceEEEEECCCCCCCeeEECCC----------CC-CCccceeEEEECCEEEEEcccCC-CcccceEEE
Confidence 6899999877788999999999999 999976 33 35678999999999999999854 344789999
Q ss_pred EECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE
Q 007111 78 FDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 157 (617)
Q Consensus 78 yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~ 157 (617)
||+.+++|+.++ ++|.+|.+|+++.++++||++||.+... .++++++||+.+++|+.+. ++|.+|++|+++.+
T Consensus 133 ~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~ 205 (301)
T 2vpj_A 133 YDPNIDQWSMLG---DMQTAREGAGLVVASGVIYCLGGYDGLN-ILNSVEKYDPHTGHWTNVT---PMATKRSGAGVALL 205 (301)
T ss_dssp EETTTTEEEEEE---ECSSCCBSCEEEEETTEEEEECCBCSSC-BCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEE
T ss_pred EcCCCCeEEECC---CCCCCcccceEEEECCEEEEECCCCCCc-ccceEEEEeCCCCcEEeCC---CCCcccccceEEEE
Confidence 999999999998 7899999999999999999999987764 6899999999999999994 89999999999999
Q ss_pred CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcE
Q 007111 158 DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEW 237 (617)
Q Consensus 158 ~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W 237 (617)
+++ |||+||.+.....+++++||+.+++|+.+..+ |.+|..|+++.++++|||+||.......+++++||+.+++|
T Consensus 206 ~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 206 NDH-IYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM---TTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp TTE-EEEECCBCSSSBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred CCE-EEEEeCCCCCcccceEEEEeCCCCcEEECCCC---CCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 988 99999998877789999999999999999754 88999999999999999999988777778999999999999
Q ss_pred EEeecCCCCCCCCCcceEEEEEe
Q 007111 238 SVAITSPSSSVTSNKGFTLVLVQ 260 (617)
Q Consensus 238 ~~l~~~~~~~p~~r~~~s~v~v~ 260 (617)
+.++ ..|.+|.+|+++++.
T Consensus 282 ~~~~----~~~~~r~~~~~~~~~ 300 (301)
T 2vpj_A 282 EVVT----SMGTQRCDAGVCVLR 300 (301)
T ss_dssp EEEE----EEEEEEESCEEEEEE
T ss_pred EEcC----CCCcccccceEEEeC
Confidence 9986 356789999988874
No 14
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=1.7e-34 Score=304.76 Aligned_cols=251 Identities=19% Similarity=0.247 Sum_probs=199.6
Q ss_pred CCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECC--CCcEEEeeccCCCC-CCcceeEEEEECCEEEEEeec-C
Q 007111 42 LKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTE--TECWSVVEAKGDIP-VARSGHTVVRASSVLILFGGE-D 117 (617)
Q Consensus 42 ~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~--t~~W~~~~~~g~~P-~~R~~~s~~~~~~~IYv~GG~-~ 117 (617)
+|. +|.+|+++.++++|||+||... +++|+||+. +++|..++ ++| .+|.+|++++++++|||+||. .
T Consensus 6 lP~-~r~~~~~~~~~~~iyv~GG~~~-----~~~~~~d~~~~~~~W~~~~---~~p~~~R~~~~~~~~~~~lyv~GG~~~ 76 (357)
T 2uvk_A 6 TPV-PFKSGTGAIDNDTVYIGLGSAG-----TAWYKLDTQAKDKKWTALA---AFPGGPRDQATSAFIDGNLYVFGGIGK 76 (357)
T ss_dssp CSS-CCCSCEEEEETTEEEEECGGGT-----TCEEEEETTSSSCCEEECC---CCTTCCCBSCEEEEETTEEEEECCEEE
T ss_pred CCc-cccceEEEEECCEEEEEeCcCC-----CeEEEEccccCCCCeeECC---CCCCCcCccceEEEECCEEEEEcCCCC
Confidence 444 4567888889999999999853 379999998 48999998 788 899999999999999999998 3
Q ss_pred ---CCCCccCeEEEEECCCCcEEEeecCCCCC-CCCcccEEEEECCcEEEEEccCCCC----------------------
Q 007111 118 ---GKRRKLNDLHMFDLKSLTWLPLHCTGTGP-SPRSNHVAALYDDKNLLIFGGSSKS---------------------- 171 (617)
Q Consensus 118 ---~~~~~~~~v~~yD~~t~~W~~l~~~g~~P-~~R~~h~a~~~~~~~LyV~GG~~~~---------------------- 171 (617)
.....++++|+||+.+++|+++. +++ .+|++|++++++++ |||+||.+..
T Consensus 77 ~~~~~~~~~~~v~~yd~~~~~W~~~~---~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (357)
T 2uvk_A 77 NSEGLTQVFNDVHKYNPKTNSWVKLM---SHAPMGMAGHVTFVHNGK-AYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKI 152 (357)
T ss_dssp CTTSCEEECCCEEEEETTTTEEEECS---CCCSSCCSSEEEEEETTE-EEEEECCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCccceeeccEEEEeCCCCcEEECC---CCCCcccccceEEEECCE-EEEEeCcCCCcCcccccchhhcCCcccchhhh
Confidence 23346899999999999999996 454 99999999999888 9999998643
Q ss_pred ------------CCCCeEEEEECCCCcEEEeecCCCCCCC-CcceEEEEECCEEEEEecCCCC-CccceEEEEEC--CCC
Q 007111 172 ------------KTLNDLYSLDFETMIWTRIKIRGFHPSP-RAGCCGVLCGTKWYIAGGGSRK-KRHAETLIFDI--LKG 235 (617)
Q Consensus 172 ------------~~~n~v~~yD~~t~~W~~~~~~g~~P~~-R~~ha~v~~~~~IyI~GG~s~~-~~~~~v~~yDl--~~~ 235 (617)
..++++++||+.+++|+.+..+ |.+ |.+|+++.++++|||+||.... ...++++.||+ .++
T Consensus 153 ~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~---p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~ 229 (357)
T 2uvk_A 153 NAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGES---PWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNL 229 (357)
T ss_dssp HHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEEC---SSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---C
T ss_pred hhhhccccccccCCcccEEEEeCCCCcEEECCCC---CCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCC
Confidence 2578999999999999999775 555 4559999999999999997643 34678999987 889
Q ss_pred cEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCC------------------CCCeEEEEECCCCcccc----
Q 007111 236 EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE------------------PSNQVEVLSIEKNESSM---- 293 (617)
Q Consensus 236 ~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~------------------~~~dV~vyd~~~~~W~~---- 293 (617)
+|+.+..+ ..|..+.+|+++++. +.|||+||.+.. ..+++++||+.+++|..
T Consensus 230 ~W~~~~~~--~~~~~~~~~~~~~~~----~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~ 303 (357)
T 2uvk_A 230 KWNKLAPV--SSPDGVAGGFAGISN----DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL 303 (357)
T ss_dssp EEEECCCS--STTTCCBSCEEEEET----TEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC
T ss_pred cEEecCCC--CCCcccccceEEEEC----CEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC
Confidence 99998743 345567788888876 889999996421 13689999999999954
Q ss_pred ---ccccccCccCCceeeeccCCC
Q 007111 294 ---GRRSTPNAKGPGQLLFEKRSS 314 (617)
Q Consensus 294 ---~w~~~~~~~~~~v~vfGG~~~ 314 (617)
+..+++...++.+++|||...
T Consensus 304 p~~r~~~~~~~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 304 SQGRAYGVSLPWNNSLLIIGGETA 327 (357)
T ss_dssp SSCCBSSEEEEETTEEEEEEEECG
T ss_pred CCCcccceeEEeCCEEEEEeeeCC
Confidence 233444457899999999854
No 15
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=1e-34 Score=334.99 Aligned_cols=268 Identities=16% Similarity=0.192 Sum_probs=219.8
Q ss_pred CEEEecCCCCCccceEEEEECCCCcEEEcc-ccccCCCCCCCCCCCcccceEEEEE--CCEEEEEcccCCCCCCceEEEE
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAAS-SKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWT 77 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~W~~l~-~~~~~~p~~~~~~~p~r~~hs~v~~--g~~lyV~GG~~~~~~~~~~v~~ 77 (617)
|||+||... ..++++++||+.+++|..++ +++ . +..+.+|.+|+++++ +++||||||........+++|+
T Consensus 400 iyv~GG~~~-~~~~~v~~yd~~~~~W~~~~~~~p----~--~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 400 VFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVS----S--SEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp EEEECCBSS-SBCCCEEEEEECSSCEEEEECCCC----C--SCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEE
T ss_pred EEEECCCCC-CCcCcEEEEECCCCeEEEeccCCC----C--CCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEE
Confidence 699999877 78899999999999999987 421 0 012456789999999 9999999999766556789999
Q ss_pred EECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEE
Q 007111 78 FDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL 156 (617)
Q Consensus 78 yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~ 156 (617)
||+.+++|+.++ ++|.+|++|+++++ +++|||+||.+... ++++||+.+++|+.+.+.+++|.+|++|++++
T Consensus 473 yd~~t~~W~~~~---~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v 545 (695)
T 2zwa_A 473 FDMKTREWSMIK---SLSHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLE 545 (695)
T ss_dssp EETTTTEEEECC---CCSBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSSGGGGSCCBSCEEE
T ss_pred EeCCCCcEEECC---CCCCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCCCCCCcccceeEEE
Confidence 999999999997 79999999999997 99999999998764 89999999999999987677999999999888
Q ss_pred EC---CcEEEEEccCCC--CCCCCeEEEEECCCCc------EEEeecCCCCCCCCcceEEEEEC-CEEEEEecCCCCC--
Q 007111 157 YD---DKNLLIFGGSSK--SKTLNDLYSLDFETMI------WTRIKIRGFHPSPRAGCCGVLCG-TKWYIAGGGSRKK-- 222 (617)
Q Consensus 157 ~~---~~~LyV~GG~~~--~~~~n~v~~yD~~t~~------W~~~~~~g~~P~~R~~ha~v~~~-~~IyI~GG~s~~~-- 222 (617)
++ ++ |||+||... ...++++++||+.+++ |+.+..+ ++.+|.+|+++.++ ++|||+||.+...
T Consensus 546 ~~~~~~~-iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~--p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~ 622 (695)
T 2zwa_A 546 FDPVSKQ-GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH--PLFQRYGSQIKYITPRKLLIVGGTSPSGLF 622 (695)
T ss_dssp EETTTTE-EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC--GGGCCBSCEEEEEETTEEEEECCBCSSCCC
T ss_pred EeCCCCE-EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC--CCCCcccceEEEeCCCEEEEECCccCCCCC
Confidence 76 55 999999854 3678999999999999 8988774 35899999999998 9999999986543
Q ss_pred -ccceEEEEECCCCcEEEeecCCCC---CCCCCcceEEEEEeecCCcEEEEEcCCC-----CCCCCeEEEEECCC
Q 007111 223 -RHAETLIFDILKGEWSVAITSPSS---SVTSNKGFTLVLVQHKEKDFLVAFGGIK-----KEPSNQVEVLSIEK 288 (617)
Q Consensus 223 -~~~~v~~yDl~~~~W~~l~~~~~~---~p~~r~~~s~v~v~~~~~~~L~I~GG~~-----~~~~~dV~vyd~~~ 288 (617)
..+++++||+.+++|+.+..+... .++.+.+|+++++. ++.|||+||.. |...+++|.+|+..
T Consensus 623 ~~~~~v~~yd~~t~~W~~~~~p~~~~~~~~p~~~gh~~~~~~---~g~i~v~GGg~~cfsfGt~~n~i~~ldl~~ 694 (695)
T 2zwa_A 623 DRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTS---MGTIHIIGGGATCYGFGSVTNVGLKLIAIA 694 (695)
T ss_dssp CTTTSEEEEETTTTEEEECCCCHHHHHHSCCCCSSCEEECC------CEEEECCEEECTTSCEEECCCEEEEECC
T ss_pred CCCCeEEEEECCCCeEEEeeccccccCCCCccceeeeEEEeC---CCEEEEEeCCccCcCccccccceEEEEEEc
Confidence 578999999999999965422111 12367789888776 23799999953 22357888888754
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=1.4e-33 Score=325.53 Aligned_cols=254 Identities=17% Similarity=0.233 Sum_probs=211.3
Q ss_pred CCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEee-c--cCCCCCCcceeEEEEE--CCEEEEEeecC
Q 007111 43 KIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVE-A--KGDIPVARSGHTVVRA--SSVLILFGGED 117 (617)
Q Consensus 43 ~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~-~--~g~~P~~R~~~s~~~~--~~~IYv~GG~~ 117 (617)
.+++|++|++ +++++||||||... ...+++|+||+.+++|..++ . .+.+|.+|.+|+++++ +++|||+||.+
T Consensus 385 ~p~rr~g~~~-~~~~~iyv~GG~~~--~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~ 461 (695)
T 2zwa_A 385 PINRKFGDVD-VAGNDVFYMGGSNP--YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRK 461 (695)
T ss_dssp TTCCBSCEEE-ECSSCEEEECCBSS--SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBS
T ss_pred CCCCceeEEE-EECCEEEEECCCCC--CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCC
Confidence 3556766554 48999999999855 56789999999999999998 3 3568999999999999 99999999998
Q ss_pred CCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCC
Q 007111 118 GKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFH 196 (617)
Q Consensus 118 ~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~ 196 (617)
.....++++|+||+.+++|+.+ +++|.+|++|+++++ +++ ||||||.+... ++++||+.+++|+.+...+..
T Consensus 462 ~~~~~~~dv~~yd~~t~~W~~~---~~~p~~R~~h~~~~~~~~~-iyv~GG~~~~~---~v~~yd~~t~~W~~~~~~g~~ 534 (695)
T 2zwa_A 462 APHQGLSDNWIFDMKTREWSMI---KSLSHTRFRHSACSLPDGN-VLILGGVTEGP---AMLLYNVTEEIFKDVTPKDEF 534 (695)
T ss_dssp STTCBCCCCEEEETTTTEEEEC---CCCSBCCBSCEEEECTTSC-EEEECCBCSSC---SEEEEETTTTEEEECCCSSGG
T ss_pred CCCCccccEEEEeCCCCcEEEC---CCCCCCcccceEEEEcCCE-EEEECCCCCCC---CEEEEECCCCceEEccCCCCC
Confidence 8766789999999999999999 489999999999997 777 99999997655 899999999999999986667
Q ss_pred CCCCcceEEEEEC---CEEEEEecCCCC--CccceEEEEECCCCc------EEEeecCCCCCCCCCcceEEEEEeecCCc
Q 007111 197 PSPRAGCCGVLCG---TKWYIAGGGSRK--KRHAETLIFDILKGE------WSVAITSPSSSVTSNKGFTLVLVQHKEKD 265 (617)
Q Consensus 197 P~~R~~ha~v~~~---~~IyI~GG~s~~--~~~~~v~~yDl~~~~------W~~l~~~~~~~p~~r~~~s~v~v~~~~~~ 265 (617)
|.+|.+|+++.++ ++|||+||.... ...+++|+||+.++. |+.+... ++.+|.+|+++++. ++
T Consensus 535 p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~---p~~~R~~~~~~~~~---~~ 608 (695)
T 2zwa_A 535 FQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH---PLFQRYGSQIKYIT---PR 608 (695)
T ss_dssp GGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC---GGGCCBSCEEEEEE---TT
T ss_pred CCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC---CCCCcccceEEEeC---CC
Confidence 9999999987776 899999998543 567899999999999 8888642 25789999998876 37
Q ss_pred EEEEEcCCCCC----CCCeEEEEECCCCccccc--------------cccccCccCC-ceeeeccC
Q 007111 266 FLVAFGGIKKE----PSNQVEVLSIEKNESSMG--------------RRSTPNAKGP-GQLLFEKR 312 (617)
Q Consensus 266 ~L~I~GG~~~~----~~~dV~vyd~~~~~W~~~--------------w~~~~~~~~~-~v~vfGG~ 312 (617)
.|||+||.++. ..++|++||+.+++|... ..+++....+ .+++|||.
T Consensus 609 ~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 609 KLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG 674 (695)
T ss_dssp EEEEECCBCSSCCCCTTTSEEEEETTTTEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred EEEEECCccCCCCCCCCCeEEEEECCCCeEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence 89999998643 378999999999999531 1122332344 89999996
No 17
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.96 E-value=7.3e-30 Score=292.25 Aligned_cols=288 Identities=11% Similarity=0.020 Sum_probs=213.7
Q ss_pred CEEEecCCCCC------ccceEEEEECCCCcEEEccccccCCCCCCCCCCCcc-cceEEEE-ECCEEEEEcccCCCCCCc
Q 007111 1 MIVVGGESGNG------LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPAC-RGHSLIS-WGKKVLLVGGKTDSGSDR 72 (617)
Q Consensus 1 i~V~GG~~~~~------~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r-~~hs~v~-~g~~lyV~GG~~~~~~~~ 72 (617)
|||+||..... ..+++++||+.+++|..+..+ +.++. ..++++. .+++||++||....
T Consensus 200 l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~----------~~~~~~~~~~~~~~~~g~lyv~GG~~~~---- 265 (656)
T 1k3i_A 200 VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT----------VTKHDMFCPGISMDGNGQIVVTGGNDAK---- 265 (656)
T ss_dssp EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE----------ECSCCCSSCEEEECTTSCEEEECSSSTT----
T ss_pred EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCccc----------CCCCCCccccccCCCCCCEEEeCCCCCC----
Confidence 68999976432 345799999999999988763 22322 2333443 58999999998542
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecC--CCCCCCC
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT--GTGPSPR 149 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~--g~~P~~R 149 (617)
++++||+.+++|..++ +||.+|.+|+++++ +++||++||.......++++++||+.+++|+.++.. .+++.+|
T Consensus 266 -~v~~yd~~t~~W~~~~---~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~ 341 (656)
T 1k3i_A 266 -KTSLYDSSSDSWIPGP---DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD 341 (656)
T ss_dssp -CEEEEEGGGTEEEECC---CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC
T ss_pred -ceEEecCcCCceeECC---CCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc
Confidence 6999999999999997 79999999999999 999999999644445789999999999999998432 2455555
Q ss_pred cccEEEEECCcEEEEEccCCCC----CCCCeEEEEECCCCcEEEeecCCCC----CCCCcceEEEE---ECCEEEEEecC
Q 007111 150 SNHVAALYDDKNLLIFGGSSKS----KTLNDLYSLDFETMIWTRIKIRGFH----PSPRAGCCGVL---CGTKWYIAGGG 218 (617)
Q Consensus 150 ~~h~a~~~~~~~LyV~GG~~~~----~~~n~v~~yD~~t~~W~~~~~~g~~----P~~R~~ha~v~---~~~~IyI~GG~ 218 (617)
.. +++..++. +|+|||.++. ...++++.||+.++.|......... +.++..++++. .+++|||+||.
T Consensus 342 ~~-~~~~~~~~-iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~ 419 (656)
T 1k3i_A 342 KQ-GLYRSDNH-AWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGS 419 (656)
T ss_dssp TT-GGGTTTCS-CCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCB
T ss_pred cc-ceeecCCc-eEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCC
Confidence 43 44446777 9999998653 3478899999999998865432111 12333444543 48999999996
Q ss_pred CC---CCccc---eEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCC-------CCCCeEEEEE
Q 007111 219 SR---KKRHA---ETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK-------EPSNQVEVLS 285 (617)
Q Consensus 219 s~---~~~~~---~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~-------~~~~dV~vyd 285 (617)
.. ...++ .+++||+.++.|..+. ...+|.+|..|+++++. +++|||+||.+. ...+++++||
T Consensus 420 ~~~~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~mp~~R~~~~~~~l~---~g~i~v~GG~~~~~~~~~~~~~~~v~~yd 494 (656)
T 1k3i_A 420 PDYQDSDATTNAHIITLGEPGTSPNTVFA--SNGLYFARTFHTSVVLP---DGSTFITGGQRRGIPFEDSTPVFTPEIYV 494 (656)
T ss_dssp SSSSSSBCCCCEEEEECCSTTSCCEEEEC--TTCCSSCCBSCEEEECT---TSCEEEECCBSBCCTTCCCSBCCCCEEEE
T ss_pred CCCCCCCcCCcceEEEcCCCCCCCeeEEc--cCCCCCCcccCCeEECC---CCCEEEECCcccCcCcCCCCcccceEEEc
Confidence 43 22334 7899999999999875 23567889999988884 378999999752 2368999999
Q ss_pred CCCCcccc--------ccccccC-ccCCceeeeccCC
Q 007111 286 IEKNESSM--------GRRSTPN-AKGPGQLLFEKRS 313 (617)
Q Consensus 286 ~~~~~W~~--------~w~~~~~-~~~~~v~vfGG~~ 313 (617)
+.+++|.. ..|.++. ..++.++++||..
T Consensus 495 p~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~ 531 (656)
T 1k3i_A 495 PEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGL 531 (656)
T ss_dssp GGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCC
T ss_pred CCCCceeecCCCCCccccccHhhcCCCcEEEecCCCC
Confidence 99999954 3344333 2488999999964
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.94 E-value=1e-26 Score=266.16 Aligned_cols=261 Identities=15% Similarity=0.161 Sum_probs=196.6
Q ss_pred CEEEecCCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEE
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFD 79 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd 79 (617)
|||+||..+. ++++||+.+++|..+++ ++. +|..|+++.+ +++|||+||........+++++||
T Consensus 256 lyv~GG~~~~----~v~~yd~~t~~W~~~~~----------~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd 320 (656)
T 1k3i_A 256 IVVTGGNDAK----KTSLYDSSSDSWIPGPD----------MQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS 320 (656)
T ss_dssp EEEECSSSTT----CEEEEEGGGTEEEECCC----------CSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred EEEeCCCCCC----ceEEecCcCCceeECCC----------CCc-cccccceEEecCCeEEEEeCcccCCcccccceEeC
Confidence 6899997643 79999999999999976 333 5667999998 999999999645555678899999
Q ss_pred CCCCcEEEeeccC--CCCCCcceeEEEEECCEEEEEeecCCCC---CccCeEEEEECCCCcEEEeecCCCCCC------C
Q 007111 80 TETECWSVVEAKG--DIPVARSGHTVVRASSVLILFGGEDGKR---RKLNDLHMFDLKSLTWLPLHCTGTGPS------P 148 (617)
Q Consensus 80 ~~t~~W~~~~~~g--~~P~~R~~~s~~~~~~~IYv~GG~~~~~---~~~~~v~~yD~~t~~W~~l~~~g~~P~------~ 148 (617)
+.+++|..++..+ +++..|.. +++..++++|++||.++.. ...++++.||+.++.|.... +..+. +
T Consensus 321 ~~t~~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~--~~~~~~~~~~~~ 397 (656)
T 1k3i_A 321 PSSKTWTSLPNAKVNPMLTADKQ-GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSA--GKRQSNRGVAPD 397 (656)
T ss_dssp TTTTEEEEETTSCSGGGCCCCTT-GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEE--EECEETTEECCC
T ss_pred CCCCcceeCCCcccccccccccc-ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecC--CccccccccCCC
Confidence 9999999985321 34555543 4555789999999987531 24689999999999987643 22222 3
Q ss_pred CcccEEEE---ECCcEEEEEccCCC---CCCCC---eEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecC
Q 007111 149 RSNHVAAL---YDDKNLLIFGGSSK---SKTLN---DLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGG 218 (617)
Q Consensus 149 R~~h~a~~---~~~~~LyV~GG~~~---~~~~n---~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~ 218 (617)
+..+++++ ++++ |||+||... ...++ .+++||+.+++|..+. .+.+|.+|..|+++.+ +++|||+||.
T Consensus 398 ~~~~~av~~~~~~~~-i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~R~~~~~~~l~~g~i~v~GG~ 475 (656)
T 1k3i_A 398 AMCGNAVMYDAVKGK-ILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLYFARTFHTSVVLPDGSTFITGGQ 475 (656)
T ss_dssp CBTCEEEEEETTTTE-EEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCSSCCBSCEEEECTTSCEEEECCB
T ss_pred CCCCceEeccCCCCe-EEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCCCCcccCCeEECCCCCEEEECCc
Confidence 34455554 3566 999999642 33445 7999999999999987 2345899999998888 9999999997
Q ss_pred CC------CCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCC-CC---CCCeEEEEECC
Q 007111 219 SR------KKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK-KE---PSNQVEVLSIE 287 (617)
Q Consensus 219 s~------~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~-~~---~~~dV~vyd~~ 287 (617)
.. .....++++||+.+++|+.+. ..+.+|.+|+++++.. ++.|||+||.. +. ...++++|.|.
T Consensus 476 ~~~~~~~~~~~~~~v~~ydp~t~~W~~~~----~~~~~R~~hs~a~ll~--dg~v~v~GG~~~~~~~~~~~~~e~~~Pp 548 (656)
T 1k3i_A 476 RRGIPFEDSTPVFTPEIYVPEQDTFYKQN----PNSIVRVYHSISLLLP--DGRVFNGGGGLCGDCTTNHFDAQIFTPN 548 (656)
T ss_dssp SBCCTTCCCSBCCCCEEEEGGGTEEEECC----CCSSCCCTTEEEEECT--TSCEEEEECCCCTTCSCCCCEEEEEECG
T ss_pred ccCcCcCCCCcccceEEEcCCCCceeecC----CCCCccccccHhhcCC--CcEEEecCCCCCCCCCCCeeEEEEEeCh
Confidence 53 244678999999999999975 3467899999887732 26799999963 22 24567888764
No 19
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.98 E-value=0.0017 Score=64.76 Aligned_cols=163 Identities=17% Similarity=0.043 Sum_probs=109.8
Q ss_pred cceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEE
Q 007111 48 RGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLH 127 (617)
Q Consensus 48 ~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~ 127 (617)
+-+.+...++.+|+-.|..+ .+.+..+|+.+++-...- ++|..-.+.+++..+++||+.... .+.++
T Consensus 22 ftqGL~~~~~~LyestG~~g----~S~v~~vD~~tgkv~~~~---~l~~~~fgeGi~~~~~~ly~ltw~------~~~v~ 88 (243)
T 3mbr_X 22 FTEGLFYLRGHLYESTGETG----RSSVRKVDLETGRILQRA---EVPPPYFGAGIVAWRDRLIQLTWR------NHEGF 88 (243)
T ss_dssp CEEEEEEETTEEEEEECCTT----SCEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESS------SSEEE
T ss_pred ccccEEEECCEEEEECCCCC----CceEEEEECCCCCEEEEE---eCCCCcceeEEEEeCCEEEEEEee------CCEEE
Confidence 34677788999999988743 247999999999865544 466677788888999999998532 46799
Q ss_pred EEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc-eEEE
Q 007111 128 MFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCGV 206 (617)
Q Consensus 128 ~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~-ha~v 206 (617)
+||+.+.+-..- ++.+..+.+++.-++. +|+.-|. +.++.+|+.+.+-..-...+..+.+... --+.
T Consensus 89 v~D~~tl~~~~t-----i~~~~~Gwglt~dg~~-L~vSdgs------~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe 156 (243)
T 3mbr_X 89 VYDLATLTPRAR-----FRYPGEGWALTSDDSH-LYMSDGT------AVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE 156 (243)
T ss_dssp EEETTTTEEEEE-----EECSSCCCEEEECSSC-EEEECSS------SEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EEECCcCcEEEE-----EeCCCCceEEeeCCCE-EEEECCC------CeEEEEeCCCCeEEEEEEEccCCcccccceeeE
Confidence 999998875422 2223356666654555 8887662 4699999998765543332222223221 2344
Q ss_pred EECCEEEEEecCCCCCccceEEEEECCCCcEEEe
Q 007111 207 LCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 240 (617)
Q Consensus 207 ~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l 240 (617)
..+++||+---. .+++.+.|+.+.+-...
T Consensus 157 ~~~G~lyanvw~-----s~~I~vIDp~tG~V~~~ 185 (243)
T 3mbr_X 157 WVNGELLANVWL-----TSRIARIDPASGKVVAW 185 (243)
T ss_dssp EETTEEEEEETT-----TTEEEEECTTTCBEEEE
T ss_pred EeCCEEEEEECC-----CCeEEEEECCCCCEEEE
Confidence 568998865322 35799999999875443
No 20
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.93 E-value=0.012 Score=60.34 Aligned_cols=231 Identities=10% Similarity=-0.016 Sum_probs=132.8
Q ss_pred cceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcE-EEeecc
Q 007111 13 LDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECW-SVVEAK 91 (617)
Q Consensus 13 ~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~ 91 (617)
-+++..||+.+.++...-..... + .+. ....+.++..++++|+.... ...+.++|+.+.+. ..++
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n-~----~~l-g~~~~~i~~~~~~lyv~~~~------~~~v~viD~~t~~~~~~i~-- 81 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRAN-G----FKL-GDVAQSMVIRDGIGWIVVNN------SHVIFAIDINTFKEVGRIT-- 81 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHH-S----SCC-BSCEEEEEEETTEEEEEEGG------GTEEEEEETTTCCEEEEEE--
T ss_pred CceEEEEECCCCEEhhhhHhhhc-C----ccc-CccceEEEEECCEEEEEEcC------CCEEEEEECcccEEEEEcC--
Confidence 46799999999988643210000 0 111 12235677789999999753 24799999998875 3343
Q ss_pred CCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCCcEEE-eecCCCCCC-CCcccEEEEECCcEEEEEccC
Q 007111 92 GDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP-LHCTGTGPS-PRSNHVAALYDDKNLLIFGGS 168 (617)
Q Consensus 92 g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~-l~~~g~~P~-~R~~h~a~~~~~~~LyV~GG~ 168 (617)
.. ...+.++. .++++|+.... .+.++++|+.+.+-.. ++ .+.... ...-+.++..+++ +|+..-
T Consensus 82 -~~---~~p~~i~~~~~g~lyv~~~~------~~~v~~iD~~t~~~~~~i~-~g~~~~~~~~p~~i~~~~~~-lyv~~~- 148 (328)
T 3dsm_A 82 -GF---TSPRYIHFLSDEKAYVTQIW------DYRIFIINPKTYEITGYIE-CPDMDMESGSTEQMVQYGKY-VYVNCW- 148 (328)
T ss_dssp -CC---SSEEEEEEEETTEEEEEEBS------CSEEEEEETTTTEEEEEEE-CTTCCTTTCBCCCEEEETTE-EEEEEC-
T ss_pred -CC---CCCcEEEEeCCCeEEEEECC------CCeEEEEECCCCeEEEEEE-cCCccccCCCcceEEEECCE-EEEEcC-
Confidence 11 22334444 67899998642 3679999999987543 32 122100 0011234444444 888742
Q ss_pred CCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCC-----ccceEEEEECCCCcEEEeec
Q 007111 169 SKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKK-----RHAETLIFDILKGEWSVAIT 242 (617)
Q Consensus 169 ~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~-----~~~~v~~yDl~~~~W~~l~~ 242 (617)
. .-+.|.+||+.+++.......+..| . .++.. ++++|+........ ....++++|+.+.+....-.
T Consensus 149 ~---~~~~v~viD~~t~~~~~~i~~g~~p--~---~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~ 220 (328)
T 3dsm_A 149 S---YQNRILKIDTETDKVVDELTIGIQP--T---SLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK 220 (328)
T ss_dssp T---TCCEEEEEETTTTEEEEEEECSSCB--C---CCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE
T ss_pred C---CCCEEEEEECCCCeEEEEEEcCCCc--c---ceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe
Confidence 1 1256999999998876544433222 2 22333 67888875322111 13679999999887654221
Q ss_pred CCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 243 SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 243 ~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
.+. .. ....+.+. .+...+|+..+ .|+++|+.+.+.
T Consensus 221 ~~~----g~-~p~~la~~-~d~~~lyv~~~-------~v~~~d~~t~~~ 256 (328)
T 3dsm_A 221 FKL----GD-WPSEVQLN-GTRDTLYWINN-------DIWRMPVEADRV 256 (328)
T ss_dssp CCT----TC-CCEEEEEC-TTSCEEEEESS-------SEEEEETTCSSC
T ss_pred cCC----CC-CceeEEEe-cCCCEEEEEcc-------EEEEEECCCCce
Confidence 111 11 12233333 23467888654 689999987764
No 21
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.87 E-value=0.0069 Score=62.14 Aligned_cols=229 Identities=10% Similarity=0.023 Sum_probs=127.3
Q ss_pred ceEEEEECCCCcEE-EccccccCCCCCCCCCCCcccceEEEE-ECCEEEEEcccCCCCCCceEEEEEECCCCcEEE-eec
Q 007111 14 DDVQVLNFDRFSWT-AASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSV-VEA 90 (617)
Q Consensus 14 ~~v~~yd~~t~~W~-~l~~~~~~~p~~~~~~~p~r~~hs~v~-~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~ 90 (617)
+.+.++|+.+.+-. .++. . .. .+.++. .++++|+.... ...++++|+.+.+... ++.
T Consensus 64 ~~v~viD~~t~~~~~~i~~----------~-~~---p~~i~~~~~g~lyv~~~~------~~~v~~iD~~t~~~~~~i~~ 123 (328)
T 3dsm_A 64 HVIFAIDINTFKEVGRITG----------F-TS---PRYIHFLSDEKAYVTQIW------DYRIFIINPKTYEITGYIEC 123 (328)
T ss_dssp TEEEEEETTTCCEEEEEEC----------C-SS---EEEEEEEETTEEEEEEBS------CSEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEECcccEEEEEcCC----------C-CC---CcEEEEeCCCeEEEEECC------CCeEEEEECCCCeEEEEEEc
Confidence 56899999887753 3321 1 11 133444 67899998743 2479999999987543 331
Q ss_pred cCCCC-CCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCC
Q 007111 91 KGDIP-VARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSS 169 (617)
Q Consensus 91 ~g~~P-~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~ 169 (617)
+... .......++..++++|+..- . ..+.+.++|+.+++....-..+..| +.++...+..+|+.....
T Consensus 124 -g~~~~~~~~p~~i~~~~~~lyv~~~-~----~~~~v~viD~~t~~~~~~i~~g~~p-----~~i~~~~dG~l~v~~~~~ 192 (328)
T 3dsm_A 124 -PDMDMESGSTEQMVQYGKYVYVNCW-S----YQNRILKIDTETDKVVDELTIGIQP-----TSLVMDKYNKMWTITDGG 192 (328)
T ss_dssp -TTCCTTTCBCCCEEEETTEEEEEEC-T----TCCEEEEEETTTTEEEEEEECSSCB-----CCCEECTTSEEEEEBCCB
T ss_pred -CCccccCCCcceEEEECCEEEEEcC-C----CCCEEEEEECCCCeEEEEEEcCCCc-----cceEEcCCCCEEEEECCC
Confidence 1100 00123344457889999841 0 2467999999998865432222222 233333333377664322
Q ss_pred CC-CC----CCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEeec
Q 007111 170 KS-KT----LNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 242 (617)
Q Consensus 170 ~~-~~----~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~ 242 (617)
.. .. .+.+++||+.+.+....... |....-..++.. ++.+|+..+ .+++||+.+.+......
T Consensus 193 ~~~~~~~~~~~~v~~id~~t~~v~~~~~~---~~g~~p~~la~~~d~~~lyv~~~--------~v~~~d~~t~~~~~~~~ 261 (328)
T 3dsm_A 193 YEGSPYGYEAPSLYRIDAETFTVEKQFKF---KLGDWPSEVQLNGTRDTLYWINN--------DIWRMPVEADRVPVRPF 261 (328)
T ss_dssp CTTCSSCBCCCEEEEEETTTTEEEEEEEC---CTTCCCEEEEECTTSCEEEEESS--------SEEEEETTCSSCCSSCS
T ss_pred ccCCccccCCceEEEEECCCCeEEEEEec---CCCCCceeEEEecCCCEEEEEcc--------EEEEEECCCCceeeeee
Confidence 11 11 36899999999887644332 222222344444 567888754 58999998876422111
Q ss_pred CCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 243 SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 243 ~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.+ ........+.+.. +.+.||+....+-...+.|.+||+. .+
T Consensus 262 ~~----~~~~~p~gi~vdp-~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 262 LE----FRDTKYYGLTVNP-NNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp BC----CCSSCEEEEEECT-TTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred ec----CCCCceEEEEEcC-CCCeEEEEcccccccCCEEEEECCC-CC
Confidence 11 1112233344432 2467888863221124589999998 44
No 22
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.80 E-value=0.012 Score=62.35 Aligned_cols=199 Identities=13% Similarity=0.162 Sum_probs=109.7
Q ss_pred EEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECC
Q 007111 53 ISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLK 132 (617)
Q Consensus 53 v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~ 132 (617)
+.+++..++.|+.+ ..+..||+.+..-...- ........+...++..++.|+.++ .+.+||..
T Consensus 245 ~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~l~~~~~d~------~i~i~d~~ 307 (445)
T 2ovr_B 245 VQYDGRRVVSGAYD------FMVKVWDPETETCLHTL-----QGHTNRVYSLQFDGIHVVSGSLDT------SIRVWDVE 307 (445)
T ss_dssp EEECSSCEEEEETT------SCEEEEEGGGTEEEEEE-----CCCSSCEEEEEECSSEEEEEETTS------CEEEEETT
T ss_pred EEECCCEEEEEcCC------CEEEEEECCCCcEeEEe-----cCCCCceEEEEECCCEEEEEeCCC------eEEEEECC
Confidence 33466667777653 24788888776532221 111122233334777777777644 48899998
Q ss_pred CCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEE
Q 007111 133 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKW 212 (617)
Q Consensus 133 t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~I 212 (617)
+.+-...- ........+...++. +++.|+.++ .+..||+.++.....-... .........+.+++.+
T Consensus 308 ~~~~~~~~-----~~~~~~v~~~~~~~~-~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~ 374 (445)
T 2ovr_B 308 TGNCIHTL-----TGHQSLTSGMELKDN-ILVSGNADS-----TVKIWDIKTGQCLQTLQGP--NKHQSAVTCLQFNKNF 374 (445)
T ss_dssp TCCEEEEE-----CCCCSCEEEEEEETT-EEEEEETTS-----CEEEEETTTCCEEEEECST--TSCSSCEEEEEECSSE
T ss_pred CCCEEEEE-----cCCcccEEEEEEeCC-EEEEEeCCC-----eEEEEECCCCcEEEEEccC--CCCCCCEEEEEECCCE
Confidence 87644321 111112233445667 677777764 4999999877644332210 1112222334456777
Q ss_pred EEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 213 YIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 213 yI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
++.|+.. ..+.+||+.+.+....-... ...........+.+ ..++.++++|+.++.....+.+||...+
T Consensus 375 l~s~~~d-----g~v~iwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~--s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 375 VITSSDD-----GTVKLWDLKTGEFIRNLVTL-ESGGSGGVVWRIRA--SNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEETT-----SEEEEEETTTCCEEEEEEEC-TTGGGTCEEEEEEE--CSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEEeCC-----CeEEEEECCCCceeeeeecc-ccCCCCceEEEEEe--cCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 7777755 35889999887654322101 00111112222333 2357788899988766667899987654
No 23
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.69 E-value=0.0078 Score=60.55 Aligned_cols=162 Identities=12% Similarity=0.010 Sum_probs=105.4
Q ss_pred ceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEE
Q 007111 49 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHM 128 (617)
Q Consensus 49 ~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~ 128 (617)
...+...++.+|+-.|..+ .+.+.++|+.+.+-...- +++..-.+..++..+++||+.... .+.+++
T Consensus 45 tqGL~~~~~~LyestG~~g----~S~v~~vD~~Tgkv~~~~---~l~~~~FgeGit~~g~~ly~ltw~------~~~v~v 111 (262)
T 3nol_A 45 TEGFFYRNGYFYESTGLNG----RSSIRKVDIESGKTLQQI---ELGKRYFGEGISDWKDKIVGLTWK------NGLGFV 111 (262)
T ss_dssp EEEEEEETTEEEEEEEETT----EEEEEEECTTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESS------SSEEEE
T ss_pred cceEEEECCEEEEECCCCC----CceEEEEECCCCcEEEEE---ecCCccceeEEEEeCCEEEEEEee------CCEEEE
Confidence 4566666899999998742 357999999999855443 356666677788899999998542 467999
Q ss_pred EECCCCcEE-EeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc-eEEE
Q 007111 129 FDLKSLTWL-PLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCGV 206 (617)
Q Consensus 129 yD~~t~~W~-~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~-ha~v 206 (617)
||+.+.+-. +++ .+-.+.+.+.-++. +|+.-|. +.++.+|+.+.+-..-...+..+.+... --+.
T Consensus 112 ~D~~t~~~~~ti~------~~~eG~glt~dg~~-L~~SdGs------~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe 178 (262)
T 3nol_A 112 WNIRNLRQVRSFN------YDGEGWGLTHNDQY-LIMSDGT------PVLRFLDPESLTPVRTITVTAHGEELPELNELE 178 (262)
T ss_dssp EETTTCCEEEEEE------CSSCCCCEEECSSC-EEECCSS------SEEEEECTTTCSEEEEEECEETTEECCCEEEEE
T ss_pred EECccCcEEEEEE------CCCCceEEecCCCE-EEEECCC------CeEEEEcCCCCeEEEEEEeccCCccccccceeE
Confidence 999988754 332 22355566654444 8886552 5699999998765543222111111111 1244
Q ss_pred EECCEEEEEecCCCCCccceEEEEECCCCcEEEee
Q 007111 207 LCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 241 (617)
Q Consensus 207 ~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~ 241 (617)
..+++||+---. .+++.+.|+.+.+-...-
T Consensus 179 ~~~G~lyan~w~-----~~~I~vIDp~tG~V~~~I 208 (262)
T 3nol_A 179 WVDGEIFANVWQ-----TNKIVRIDPETGKVTGII 208 (262)
T ss_dssp EETTEEEEEETT-----SSEEEEECTTTCBEEEEE
T ss_pred EECCEEEEEEcc-----CCeEEEEECCCCcEEEEE
Confidence 458898864322 357999999998754433
No 24
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.63 E-value=0.0066 Score=62.65 Aligned_cols=225 Identities=18% Similarity=0.109 Sum_probs=122.0
Q ss_pred CEEEecCCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEcccCCCCCCceEEEEE
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTF 78 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~--g~~lyV~GG~~~~~~~~~~v~~y 78 (617)
+|+.|+.+ ..+.+||+.+++....-. .. .. -.+++.. +..+|+.|+.+ ..+.+|
T Consensus 4 l~vs~~~d-----~~v~v~d~~~~~~~~~~~----------~~--~~-~~~~~~s~dg~~l~~~~~~d------~~i~v~ 59 (391)
T 1l0q_A 4 AYIANSES-----DNISVIDVTSNKVTATIP----------VG--SN-PMGAVISPDGTKVYVANAHS------NDVSII 59 (391)
T ss_dssp EEEEETTT-----TEEEEEETTTTEEEEEEE----------CS--SS-EEEEEECTTSSEEEEEEGGG------TEEEEE
T ss_pred EEEEcCCC-----CEEEEEECCCCeEEEEee----------cC--CC-cceEEECCCCCEEEEECCCC------CeEEEE
Confidence 35566543 469999998876543322 01 11 1233332 34677777552 369999
Q ss_pred ECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEE
Q 007111 79 DTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL 156 (617)
Q Consensus 79 d~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~ 156 (617)
|+.+.+....-. .+. .-.+++.. +..||+.|.. ...+++||+.+++....-. ....-..++.
T Consensus 60 d~~~~~~~~~~~---~~~--~v~~~~~spdg~~l~~~~~~------~~~v~v~d~~~~~~~~~~~-----~~~~~~~~~~ 123 (391)
T 1l0q_A 60 DTATNNVIATVP---AGS--SPQGVAVSPDGKQVYVTNMA------SSTLSVIDTTSNTVAGTVK-----TGKSPLGLAL 123 (391)
T ss_dssp ETTTTEEEEEEE---CSS--SEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEE-----CSSSEEEEEE
T ss_pred ECCCCeEEEEEE---CCC--CccceEECCCCCEEEEEECC------CCEEEEEECCCCeEEEEEe-----CCCCcceEEE
Confidence 998887544331 122 22233332 3456665432 2469999999887654421 1111223333
Q ss_pred E-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECC
Q 007111 157 Y-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDIL 233 (617)
Q Consensus 157 ~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~ 233 (617)
. +++.+|+.++.+ +.+++||+.+++.......+ ..-..++.. +..+|+.++.. ..+++||+.
T Consensus 124 s~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~-----~~~~~~~~~~dg~~l~~~~~~~-----~~v~~~d~~ 188 (391)
T 1l0q_A 124 SPDGKKLYVTNNGD-----KTVSVINTVTKAVINTVSVG-----RSPKGIAVTPDGTKVYVANFDS-----MSISVIDTV 188 (391)
T ss_dssp CTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEECC-----SSEEEEEECTTSSEEEEEETTT-----TEEEEEETT
T ss_pred CCCCCEEEEEeCCC-----CEEEEEECCCCcEEEEEecC-----CCcceEEECCCCCEEEEEeCCC-----CEEEEEECC
Confidence 3 455577777654 36999999988776554432 111233333 44677776543 458999998
Q ss_pred CCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 234 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 234 ~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
+......... ......+.+. .+...|++.+... ....|.+||+.+.+
T Consensus 189 ~~~~~~~~~~-------~~~~~~~~~~-~~g~~l~~~~~~~--~~~~v~~~d~~~~~ 235 (391)
T 1l0q_A 189 TNSVIDTVKV-------EAAPSGIAVN-PEGTKAYVTNVDK--YFNTVSMIDTGTNK 235 (391)
T ss_dssp TTEEEEEEEC-------SSEEEEEEEC-TTSSEEEEEEECS--SCCEEEEEETTTTE
T ss_pred CCeEEEEEec-------CCCccceEEC-CCCCEEEEEecCc--CCCcEEEEECCCCe
Confidence 8765443311 1122333343 2334555554211 13478999987764
No 25
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.51 E-value=0.048 Score=57.55 Aligned_cols=187 Identities=15% Similarity=0.150 Sum_probs=101.0
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 135 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~ 135 (617)
.+..++.|+.+ ..+.+||+.+..-...- ........++..++.+++.|+.++ .+.+||+.+.+
T Consensus 208 ~~~~l~s~s~d------g~i~~wd~~~~~~~~~~-----~~~~~~v~~~~~~~~~l~~~~~dg------~i~iwd~~~~~ 270 (445)
T 2ovr_B 208 HEKRVVSGSRD------ATLRVWDIETGQCLHVL-----MGHVAAVRCVQYDGRRVVSGAYDF------MVKVWDPETET 270 (445)
T ss_dssp ETTEEEEEETT------SEEEEEESSSCCEEEEE-----ECCSSCEEEEEECSSCEEEEETTS------CEEEEEGGGTE
T ss_pred cCCEEEEEeCC------CEEEEEECCCCcEEEEE-----cCCcccEEEEEECCCEEEEEcCCC------EEEEEECCCCc
Confidence 44456666653 36888898876533221 111122233344777777777654 47889988765
Q ss_pred EEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEE
Q 007111 136 WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIA 215 (617)
Q Consensus 136 W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~ 215 (617)
-...- ........++.+++. .++.|+.++ .+..||+.++.....-.. ..........++..++.
T Consensus 271 ~~~~~-----~~~~~~v~~~~~~~~-~l~~~~~d~-----~i~i~d~~~~~~~~~~~~-----~~~~v~~~~~~~~~l~~ 334 (445)
T 2ovr_B 271 CLHTL-----QGHTNRVYSLQFDGI-HVVSGSLDT-----SIRVWDVETGNCIHTLTG-----HQSLTSGMELKDNILVS 334 (445)
T ss_dssp EEEEE-----CCCSSCEEEEEECSS-EEEEEETTS-----CEEEEETTTCCEEEEECC-----CCSCEEEEEEETTEEEE
T ss_pred EeEEe-----cCCCCceEEEEECCC-EEEEEeCCC-----eEEEEECCCCCEEEEEcC-----CcccEEEEEEeCCEEEE
Confidence 43221 111112234445777 677777764 399999988765433221 11112233345556666
Q ss_pred ecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 216 GGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 216 GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
|+..+ .+.+||+.+..-...-..+. .......++.+. +.+++.|+.++ .|.+||+.+.+.
T Consensus 335 ~~~dg-----~i~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~----~~~l~s~~~dg----~v~iwd~~~~~~ 394 (445)
T 2ovr_B 335 GNADS-----TVKIWDIKTGQCLQTLQGPN---KHQSAVTCLQFN----KNFVITSSDDG----TVKLWDLKTGEF 394 (445)
T ss_dssp EETTS-----CEEEEETTTCCEEEEECSTT---SCSSCEEEEEEC----SSEEEEEETTS----EEEEEETTTCCE
T ss_pred EeCCC-----eEEEEECCCCcEEEEEccCC---CCCCCEEEEEEC----CCEEEEEeCCC----eEEEEECCCCce
Confidence 76543 48899987765433221110 011222333332 34667777653 688999887764
No 26
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.47 E-value=0.031 Score=56.35 Aligned_cols=204 Identities=12% Similarity=-0.004 Sum_probs=119.7
Q ss_pred eEEEEEC-CEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEE
Q 007111 50 HSLISWG-KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHM 128 (617)
Q Consensus 50 hs~v~~g-~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~ 128 (617)
+.++..+ +.+|+..|... .+.+.++|+.+++-...- +++....+..++..++++|+..- ..+.+++
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~----~s~v~~iD~~tg~v~~~i---~l~~~~fgeGi~~~g~~lyv~t~------~~~~v~v 90 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG----RSSVRQVALQTGKVENIH---KMDDSYFGEGLTLLNEKLYQVVW------LKNIGFI 90 (266)
T ss_dssp EEEEECSTTEEEEEECSTT----TCEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEET------TCSEEEE
T ss_pred ccEEEeCCCeEEEECCCCC----CCEEEEEECCCCCEEEEE---ecCCCcceEEEEEeCCEEEEEEe------cCCEEEE
Confidence 5666665 79999877422 247999999999854433 24444566677788899999842 3467999
Q ss_pred EECCCCcEE-EeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCc-ceEEE
Q 007111 129 FDLKSLTWL-PLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRA-GCCGV 206 (617)
Q Consensus 129 yD~~t~~W~-~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~-~ha~v 206 (617)
||+.+.+=. .++. + +| .+.+.+. +++.+|+.-| .+.++.+|+.+.+-......+..+.+.. -..+.
T Consensus 91 iD~~t~~v~~~i~~-g-~~---~g~glt~-Dg~~l~vs~g------s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele 158 (266)
T 2iwa_A 91 YDRRTLSNIKNFTH-Q-MK---DGWGLAT-DGKILYGSDG------TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELE 158 (266)
T ss_dssp EETTTTEEEEEEEC-C-SS---SCCEEEE-CSSSEEEECS------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EECCCCcEEEEEEC-C-CC---CeEEEEE-CCCEEEEECC------CCeEEEEECCCCcEEEEEEECCCCcccccceeEE
Confidence 999987533 3321 2 22 2344444 5554888754 2579999999876554333222122211 12334
Q ss_pred EECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCC-------CCCCCcceEEEEEeecCCcEEEEEcCCCCCCCC
Q 007111 207 LCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS-------SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSN 279 (617)
Q Consensus 207 ~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~-------~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~ 279 (617)
..++.+|+--.. .+++.+.|+.+.+-...-..+.. ..........+.+. .+.+.+||.|+. .+
T Consensus 159 ~~dg~lyvn~~~-----~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~-~~~~~lfVTgk~----~~ 228 (266)
T 2iwa_A 159 YINGEVWANIWQ-----TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWD-QENKRIFVTGKL----WP 228 (266)
T ss_dssp EETTEEEEEETT-----SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEE-TTTTEEEEEETT----CS
T ss_pred EECCEEEEecCC-----CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEc-CCCCEEEEECCC----CC
Confidence 448888876432 25799999998764332211100 00011112222332 345789998875 45
Q ss_pred eEEEEECCC
Q 007111 280 QVEVLSIEK 288 (617)
Q Consensus 280 dV~vyd~~~ 288 (617)
.+++.++..
T Consensus 229 ~v~~i~l~~ 237 (266)
T 2iwa_A 229 KLFEIKLHL 237 (266)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEec
Confidence 677776644
No 27
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.47 E-value=0.015 Score=59.81 Aligned_cols=217 Identities=13% Similarity=0.073 Sum_probs=117.3
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeecc
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 91 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 91 (617)
..+.+||+.+.+....-. . +.. -.+++.. +..||+.|... ..+++||+.++.....-.
T Consensus 54 ~~i~v~d~~~~~~~~~~~----------~--~~~-v~~~~~spdg~~l~~~~~~~------~~v~v~d~~~~~~~~~~~- 113 (391)
T 1l0q_A 54 NDVSIIDTATNNVIATVP----------A--GSS-PQGVAVSPDGKQVYVTNMAS------STLSVIDTTSNTVAGTVK- 113 (391)
T ss_dssp TEEEEEETTTTEEEEEEE----------C--SSS-EEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEE-
T ss_pred CeEEEEECCCCeEEEEEE----------C--CCC-ccceEECCCCCEEEEEECCC------CEEEEEECCCCeEEEEEe-
Confidence 468999998877544332 1 111 1233332 44566665431 369999999887544431
Q ss_pred CCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccC
Q 007111 92 GDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGS 168 (617)
Q Consensus 92 g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~ 168 (617)
......+++.. +..+|+.++.+ ..+++||+.+.+....-..+. .-..++.. +++.+|+.++.
T Consensus 114 ----~~~~~~~~~~s~dg~~l~~~~~~~------~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~~~dg~~l~~~~~~ 178 (391)
T 1l0q_A 114 ----TGKSPLGLALSPDGKKLYVTNNGD------KTVSVINTVTKAVINTVSVGR-----SPKGIAVTPDGTKVYVANFD 178 (391)
T ss_dssp ----CSSSEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEETT
T ss_pred ----CCCCcceEEECCCCCEEEEEeCCC------CEEEEEECCCCcEEEEEecCC-----CcceEEECCCCCEEEEEeCC
Confidence 11122333333 34677776432 469999999887655422111 11233333 45557777665
Q ss_pred CCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CC-EEEEEecCCCCCccceEEEEECCCCcEEEeecCCCC
Q 007111 169 SKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT-KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS 246 (617)
Q Consensus 169 ~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~-~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~ 246 (617)
+ +.++.||+.++........ .....+++.. ++ .+|+.+... ....+++||+.+......... .
T Consensus 179 ~-----~~v~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~~~---~~~~v~~~d~~~~~~~~~~~~--~ 243 (391)
T 1l0q_A 179 S-----MSISVIDTVTNSVIDTVKV-----EAAPSGIAVNPEGTKAYVTNVDK---YFNTVSMIDTGTNKITARIPV--G 243 (391)
T ss_dssp T-----TEEEEEETTTTEEEEEEEC-----SSEEEEEEECTTSSEEEEEEECS---SCCEEEEEETTTTEEEEEEEC--C
T ss_pred C-----CEEEEEECCCCeEEEEEec-----CCCccceEECCCCCEEEEEecCc---CCCcEEEEECCCCeEEEEEec--C
Confidence 4 4599999988876554432 1111223332 34 455554311 125689999987754332211 1
Q ss_pred CCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 247 SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 247 ~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.....+.+. .+...||+.++.+ +.|.+||+.+.+
T Consensus 244 -----~~~~~~~~s-~dg~~l~~s~~~d----~~v~v~d~~~~~ 277 (391)
T 1l0q_A 244 -----PDPAGIAVT-PDGKKVYVALSFX----NTVSVIDTATNT 277 (391)
T ss_dssp -----SSEEEEEEC-TTSSEEEEEETTT----TEEEEEETTTTE
T ss_pred -----CCccEEEEc-cCCCEEEEEcCCC----CEEEEEECCCCc
Confidence 122333343 2345677776654 478999998765
No 28
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.45 E-value=0.14 Score=52.77 Aligned_cols=218 Identities=16% Similarity=0.201 Sum_probs=116.3
Q ss_pred ceEEEEECCCCc--EEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEee
Q 007111 14 DDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVE 89 (617)
Q Consensus 14 ~~v~~yd~~t~~--W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~ 89 (617)
..+++||..+.+ |..-........ .........+.+..++.||+.... ..++.||..+.+ |+...
T Consensus 63 g~v~a~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~v~v~~~~-------g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 63 GLVKALNADDGKEIWSVSLAEKDGWF----SKEPALLSGGVTVSGGHVYIGSEK-------AQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp SEEEEEETTTCCEEEEEECCC---CC----SCCCCCEEEEEEEETTEEEEEETT-------SEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEEccCCceeeeecCccccccc----cccCcccccCceEeCCEEEEEcCC-------CEEEEEECCCCCEEEEEeC
Confidence 369999997654 865442100000 000122234456678899986432 369999998775 76543
Q ss_pred ccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEeecCCCCCCCCcccEEEEECCcEEEEEcc
Q 007111 90 AKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGG 167 (617)
Q Consensus 90 ~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG 167 (617)
. +. ...+.+..++.+|+..+ ...++.||+.+.+ |+.-.. .+....+...+.+..++. +|+ |.
T Consensus 132 ~-~~-----~~~~p~~~~~~v~v~~~-------~g~l~~~d~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~~~-v~~-g~ 195 (376)
T 3q7m_A 132 A-GE-----ALSRPVVSDGLVLIHTS-------NGQLQALNEADGAVKWTVNLD-MPSLSLRGESAPTTAFGA-AVV-GG 195 (376)
T ss_dssp S-SC-----CCSCCEEETTEEEEECT-------TSEEEEEETTTCCEEEEEECC-C-----CCCCCCEEETTE-EEE-CC
T ss_pred C-Cc-----eEcCCEEECCEEEEEcC-------CCeEEEEECCCCcEEEEEeCC-CCceeecCCCCcEEECCE-EEE-Ec
Confidence 1 11 11223455788877432 2469999998875 886421 111111112233344444 554 44
Q ss_pred CCCCCCCCeEEEEECCCC--cEEEeecCCCCCCCC--------cceEEEEECCEEEEEecCCCCCccceEEEEECCCC--
Q 007111 168 SSKSKTLNDLYSLDFETM--IWTRIKIRGFHPSPR--------AGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG-- 235 (617)
Q Consensus 168 ~~~~~~~n~v~~yD~~t~--~W~~~~~~g~~P~~R--------~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~-- 235 (617)
.+ ..++.||+.++ .|+..... |... .....+..++.+|+.+. . ..++.||+.+.
T Consensus 196 ~~-----g~l~~~d~~tG~~~w~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~v~~~~~-~-----g~l~~~d~~tG~~ 261 (376)
T 3q7m_A 196 DN-----GRVSAVLMEQGQMIWQQRISQ---ATGSTEIDRLSDVDTTPVVVNGVVFALAY-N-----GNLTALDLRSGQI 261 (376)
T ss_dssp TT-----TEEEEEETTTCCEEEEEECCC--------------CCCCCCEEETTEEEEECT-T-----SCEEEEETTTCCE
T ss_pred CC-----CEEEEEECCCCcEEEEEeccc---CCCCcccccccccCCCcEEECCEEEEEec-C-----cEEEEEECCCCcE
Confidence 33 35999999765 46654322 1111 11233445888888652 1 35889999766
Q ss_pred cEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 236 EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 236 ~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.|..-. . .....++. ++.||+.... ..+++||+.+.+
T Consensus 262 ~w~~~~----~------~~~~~~~~---~~~l~~~~~~-----g~l~~~d~~tG~ 298 (376)
T 3q7m_A 262 MWKREL----G------SVNDFIVD---GNRIYLVDQN-----DRVMALTIDGGV 298 (376)
T ss_dssp EEEECC----C------CEEEEEEE---TTEEEEEETT-----CCEEEEETTTCC
T ss_pred EeeccC----C------CCCCceEE---CCEEEEEcCC-----CeEEEEECCCCc
Confidence 477531 1 12222332 3667765432 268999988765
No 29
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.42 E-value=0.1 Score=51.84 Aligned_cols=219 Identities=13% Similarity=0.056 Sum_probs=111.8
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 93 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~ 93 (617)
.+.+|+..+......-.. ....-.+++.. ++.+++.|+.+ ..+.+||+.+..-...-.
T Consensus 46 ~i~iw~~~~~~~~~~~~~------------h~~~v~~~~~~~~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~--- 104 (312)
T 4ery_A 46 LIKIWGAYDGKFEKTISG------------HKLGISDVAWSSDSNLLVSASDD------KTLKIWDVSSGKCLKTLK--- 104 (312)
T ss_dssp CEEEEETTTCCEEEEECC------------CSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTCCEEEEEE---
T ss_pred eEEEEeCCCcccchhhcc------------CCCceEEEEEcCCCCEEEEECCC------CEEEEEECCCCcEEEEEc---
Confidence 478888877766443220 01111223222 45677777753 268888988775332210
Q ss_pred CCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE--CCcEEEEEccCC
Q 007111 94 IPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSS 169 (617)
Q Consensus 94 ~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~--~~~~LyV~GG~~ 169 (617)
... ....++.+ ++.+++.|+.++ .+.+||+.+.+-...- +.....-.++.+ ++. +++.|+.+
T Consensus 105 ~~~--~~v~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~-~l~~~~~d 170 (312)
T 4ery_A 105 GHS--NYVFCCNFNPQSNLIVSGSFDE------SVRIWDVKTGKCLKTL-----PAHSDPVSAVHFNRDGS-LIVSSSYD 170 (312)
T ss_dssp CCS--SCEEEEEECSSSSEEEEEETTS------CEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSS-EEEEEETT
T ss_pred CCC--CCEEEEEEcCCCCEEEEEeCCC------cEEEEECCCCEEEEEe-----cCCCCcEEEEEEcCCCC-EEEEEeCC
Confidence 011 11122222 456777777654 3889999877643321 111111122223 345 77788776
Q ss_pred CCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCC
Q 007111 170 KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSV 248 (617)
Q Consensus 170 ~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p 248 (617)
+ .+..||+.+.......... ..+. ...++.. ++..++.|+.. ..+.+||+.+..-...... ...
T Consensus 171 ~-----~i~~wd~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~--~~~ 235 (312)
T 4ery_A 171 G-----LCRIWDTASGQCLKTLIDD--DNPP-VSFVKFSPNGKYILAATLD-----NTLKLWDYSKGKCLKTYTG--HKN 235 (312)
T ss_dssp S-----CEEEEETTTCCEEEEECCS--SCCC-EEEEEECTTSSEEEEEETT-----TEEEEEETTTTEEEEEECS--SCC
T ss_pred C-----cEEEEECCCCceeeEEecc--CCCc-eEEEEECCCCCEEEEEcCC-----CeEEEEECCCCcEEEEEEe--cCC
Confidence 4 4899999887654432211 1111 1222222 55666666654 3588999987754332211 100
Q ss_pred CCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 249 TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 249 ~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
....-.. .... ..+.+++.||.++ .|.+||+.+.+
T Consensus 236 ~~~~~~~--~~~~-~~~~~l~sg~~dg----~i~vwd~~~~~ 270 (312)
T 4ery_A 236 EKYCIFA--NFSV-TGGKWIVSGSEDN----LVYIWNLQTKE 270 (312)
T ss_dssp SSSCCCE--EEEC-SSSCEEEECCTTS----CEEEEETTTCC
T ss_pred ceEEEEE--EEEe-CCCcEEEEECCCC----EEEEEECCCch
Confidence 0111111 1111 2355677888754 58889987765
No 30
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.40 E-value=0.01 Score=62.04 Aligned_cols=227 Identities=12% Similarity=0.041 Sum_probs=117.2
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 93 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~ 93 (617)
.++.+|+.+..+..+... +.+... .+++.. ++.+|+.|+.+ ..+++||+.+.........+.
T Consensus 102 ~l~~~d~~~~~~~~~~~~----------~~~~~~-~~~~~s~~~~~~~~~~~~------~~i~~~d~~~g~~~~~~~~~~ 164 (433)
T 3bws_A 102 KLIALDKEGITHRFISRF----------KTGFQP-KSVRFIDNTRLAIPLLED------EGMDVLDINSGQTVRLSPPEK 164 (433)
T ss_dssp CEEECCBTTCSEEEEEEE----------ECSSCB-CCCEESSSSEEEEEBTTS------SSEEEEETTTCCEEEECCCHH
T ss_pred EEEEECCCCCcceEEEEE----------cCCCCc-eEEEEeCCCeEEEEeCCC------CeEEEEECCCCeEeeecCccc
Confidence 577777766655554431 111111 122222 67888877652 248999999887665431100
Q ss_pred CCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCC
Q 007111 94 IPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSK 170 (617)
Q Consensus 94 ~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~ 170 (617)
.........++.+ ++.+|+.|+.+ ..+.+||+.+.+....-. .....-..++.. ++..+|+.|+.++
T Consensus 165 ~~~~~~~v~~~~~~~~~~~~~s~~~d------~~v~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~ 234 (433)
T 3bws_A 165 YKKKLGFVETISIPEHNELWVSQMQA------NAVHVFDLKTLAYKATVD----LTGKWSKILLYDPIRDLVYCSNWISE 234 (433)
T ss_dssp HHTTCCEEEEEEEGGGTEEEEEEGGG------TEEEEEETTTCCEEEEEE----CSSSSEEEEEEETTTTEEEEEETTTT
T ss_pred ccccCCceeEEEEcCCCEEEEEECCC------CEEEEEECCCceEEEEEc----CCCCCeeEEEEcCCCCEEEEEecCCC
Confidence 1111112222333 57888887643 458999998876443211 111111233333 4555667665543
Q ss_pred CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CC-EEEEEecCCCCC--ccceEEEEECCCCcEEEeecCCCC
Q 007111 171 SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT-KWYIAGGGSRKK--RHAETLIFDILKGEWSVAITSPSS 246 (617)
Q Consensus 171 ~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~-~IyI~GG~s~~~--~~~~v~~yDl~~~~W~~l~~~~~~ 246 (617)
.+.+||+.++........ ...-.+++.. ++ .+|+.+...... .-..+++||+.+.........+
T Consensus 235 -----~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~-- 302 (433)
T 3bws_A 235 -----DISVIDRKTKLEIRKTDK-----IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP-- 302 (433)
T ss_dssp -----EEEEEETTTTEEEEECCC-----CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE--
T ss_pred -----cEEEEECCCCcEEEEecC-----CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC--
Confidence 599999988876543221 1222333333 44 444443221111 1247899999877544332100
Q ss_pred CCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 247 SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 247 ~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.....+.+. .+...+|+.++.+ +.|.+||+.+.+
T Consensus 303 -----~~~~~~~~~-~~g~~l~~~~~~~----~~v~v~d~~~~~ 336 (433)
T 3bws_A 303 -----GNKRHIVSG-NTENKIYVSDMCC----SKIEVYDLKEKK 336 (433)
T ss_dssp -----ECEEEEEEC-SSTTEEEEEETTT----TEEEEEETTTTE
T ss_pred -----CCcceEEEC-CCCCEEEEEecCC----CEEEEEECCCCc
Confidence 112233333 2345677776654 378999988655
No 31
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.32 E-value=0.073 Score=55.46 Aligned_cols=221 Identities=17% Similarity=0.133 Sum_probs=116.0
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..+.+||..+......... .. ...-.+++.. ++.+++.|+.++ .+.+||+.+......-
T Consensus 113 ~~v~lw~~~~~~~~~~~~~----------~~-~~~v~~v~~s~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~--- 172 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAET----------DE-STYVASVKWSHDGSFLSVGLGNG------LVDIYDVESQTKLRTM--- 172 (401)
T ss_dssp TEEEEEETTTCCEEEEEEC----------CT-TCCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEEE---
T ss_pred CeEEEeeCCCCcEeEeeec----------CC-CCCEEEEEECCCCCEEEEECCCC------eEEEEECcCCeEEEEe---
Confidence 3699999998887655431 10 1111223222 556677776532 5888898877643332
Q ss_pred CCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCC
Q 007111 93 DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSS 169 (617)
Q Consensus 93 ~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~ 169 (617)
........++..++.+++.|+.++ .+.+||+.... -..+. + ....-.+++.. ++. +++.|+.+
T Consensus 173 --~~~~~~v~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~--~---~~~~v~~~~~~~~~~-~l~s~~~d 238 (401)
T 4aez_A 173 --AGHQARVGCLSWNRHVLSSGSRSG------AIHHHDVRIANHQIGTLQ--G---HSSEVCGLAWRSDGL-QLASGGND 238 (401)
T ss_dssp --CCCSSCEEEEEEETTEEEEEETTS------EEEEEETTSSSCEEEEEE--C---CSSCEEEEEECTTSS-EEEEEETT
T ss_pred --cCCCCceEEEEECCCEEEEEcCCC------CEEEEecccCcceeeEEc--C---CCCCeeEEEEcCCCC-EEEEEeCC
Confidence 111222233344666777777643 58899987433 22221 1 11111122333 445 77888876
Q ss_pred CCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCC
Q 007111 170 KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSS 247 (617)
Q Consensus 170 ~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~ 247 (617)
+ .+..||+.+..-...... ....-.+++.. +..+++.||.+.+ ..+.+||+.+.........
T Consensus 239 ~-----~v~iwd~~~~~~~~~~~~----~~~~v~~~~~~p~~~~ll~~~~gs~d---~~i~i~d~~~~~~~~~~~~---- 302 (401)
T 4aez_A 239 N-----VVQIWDARSSIPKFTKTN----HNAAVKAVAWCPWQSNLLATGGGTMD---KQIHFWNAATGARVNTVDA---- 302 (401)
T ss_dssp S-----CEEEEETTCSSEEEEECC----CSSCCCEEEECTTSTTEEEEECCTTT---CEEEEEETTTCCEEEEEEC----
T ss_pred C-----eEEEccCCCCCccEEecC----CcceEEEEEECCCCCCEEEEecCCCC---CEEEEEECCCCCEEEEEeC----
Confidence 4 499999987654433221 11112233333 4567777753222 4588999987764433211
Q ss_pred CCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 248 VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 248 p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
......+.+.. +...+++.+|.. -+.|.+||+.+...
T Consensus 303 ---~~~v~~~~~s~-~~~~l~~~~g~~---dg~i~v~~~~~~~~ 339 (401)
T 4aez_A 303 ---GSQVTSLIWSP-HSKEIMSTHGFP---DNNLSIWSYSSSGL 339 (401)
T ss_dssp ---SSCEEEEEECS-SSSEEEEEECTT---TCEEEEEEEETTEE
T ss_pred ---CCcEEEEEECC-CCCeEEEEeecC---CCcEEEEecCCccc
Confidence 12234444433 335555554532 23688888877543
No 32
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.28 E-value=0.036 Score=58.57 Aligned_cols=213 Identities=12% Similarity=0.156 Sum_probs=113.4
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDI 94 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~ 94 (617)
.+.+||..+.+-...-. .... ....+.+++.+++.|+.++ .+.+||..+......-
T Consensus 154 ~i~iwd~~~~~~~~~~~------------~h~~-~v~~l~~~~~~l~sg~~dg------~i~vwd~~~~~~~~~~----- 209 (435)
T 1p22_A 154 TIKIWDKNTLECKRILT------------GHTG-SVLCLQYDERVIITGSSDS------TVRVWDVNTGEMLNTL----- 209 (435)
T ss_dssp CEEEEESSSCCEEEEEC------------CCSS-CEEEEECCSSEEEEEETTS------CEEEEESSSCCEEEEE-----
T ss_pred eEEEEeCCCCeEEEEEc------------CCCC-cEEEEEECCCEEEEEcCCC------eEEEEECCCCcEEEEE-----
Confidence 58888887766433221 0011 1233344777788887632 5888898887643322
Q ss_pred CCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCC
Q 007111 95 PVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTL 174 (617)
Q Consensus 95 P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~ 174 (617)
........+....+.+++.||.++ .+.+||..+..-..... .+........++.+++. .++.|+.++
T Consensus 210 ~~h~~~v~~l~~~~~~l~s~s~dg------~i~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~-~l~s~~~dg---- 276 (435)
T 1p22_A 210 IHHCEAVLHLRFNNGMMVTCSKDR------SIAVWDMASPTDITLRR--VLVGHRAAVNVVDFDDK-YIVSASGDR---- 276 (435)
T ss_dssp CCCCSCEEEEECCTTEEEEEETTS------CEEEEECSSSSCCEEEE--EECCCSSCEEEEEEETT-EEEEEETTS----
T ss_pred cCCCCcEEEEEEcCCEEEEeeCCC------cEEEEeCCCCCCceeee--EecCCCCcEEEEEeCCC-EEEEEeCCC----
Confidence 111222333344556777777654 48889987764221100 01111122234445677 667777654
Q ss_pred CeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcce
Q 007111 175 NDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGF 254 (617)
Q Consensus 175 n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~ 254 (617)
.+..||+.+..-...... ... ...++.+++..++.|+..+ .+.+||+.+..-...- .. .....
T Consensus 277 -~i~vwd~~~~~~~~~~~~----~~~-~v~~~~~~~~~l~~g~~dg-----~i~iwd~~~~~~~~~~--~~----h~~~v 339 (435)
T 1p22_A 277 -TIKVWNTSTCEFVRTLNG----HKR-GIACLQYRDRLVVSGSSDN-----TIRLWDIECGACLRVL--EG----HEELV 339 (435)
T ss_dssp -EEEEEETTTCCEEEEEEC----CSS-CEEEEEEETTEEEEEETTS-----CEEEEETTTCCEEEEE--CC----CSSCE
T ss_pred -eEEEEECCcCcEEEEEcC----CCC-cEEEEEeCCCEEEEEeCCC-----eEEEEECCCCCEEEEE--eC----CcCcE
Confidence 489999988765433221 111 1233344666777777553 4889999876533321 10 11122
Q ss_pred EEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 255 TLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 255 s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
.++.+. +..++.|+.++ .|.+||+.+.
T Consensus 340 ~~~~~~----~~~l~sg~~dg----~i~vwd~~~~ 366 (435)
T 1p22_A 340 RCIRFD----NKRIVSGAYDG----KIKVWDLVAA 366 (435)
T ss_dssp EEEECC----SSEEEEEETTS----CEEEEEHHHH
T ss_pred EEEEec----CCEEEEEeCCC----cEEEEECCCC
Confidence 233332 44677787654 5788887543
No 33
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.012 Score=59.72 Aligned_cols=224 Identities=10% Similarity=0.076 Sum_probs=111.8
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-C--CEEEEEcccCCCCCCceEEEEEECCCCcEEEeecc
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-G--KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 91 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g--~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 91 (617)
.+.+||+....+..+... ......-.+++.. . +.+++.|+.+. .+.+||+.+..|..+..
T Consensus 34 ~i~iw~~~~~~~~~~~~~----------~~h~~~v~~~~~~~~~~~~~l~s~~~dg------~v~iwd~~~~~~~~~~~- 96 (379)
T 3jrp_A 34 TIKIFEVEGETHKLIDTL----------TGHEGPVWRVDWAHPKFGTILASCSYDG------KVLIWKEENGRWSQIAV- 96 (379)
T ss_dssp CEEEEEEETTEEEEEEEE----------CCCSSCEEEEEECCGGGCSEEEEEETTS------CEEEEEEETTEEEEEEE-
T ss_pred cEEEEecCCCcceeeeEe----------cCCCCcEEEEEeCCCCCCCEEEEeccCC------EEEEEEcCCCceeEeee-
Confidence 588888876666655431 1111111233332 2 56777777532 48888888888766653
Q ss_pred CCCCCCcceeEEEEE--C--CEEEEEeecCCCCCccCeEEEEECCCCcE-EEeecCCCCCCCCcccEEEEE---------
Q 007111 92 GDIPVARSGHTVVRA--S--SVLILFGGEDGKRRKLNDLHMFDLKSLTW-LPLHCTGTGPSPRSNHVAALY--------- 157 (617)
Q Consensus 92 g~~P~~R~~~s~~~~--~--~~IYv~GG~~~~~~~~~~v~~yD~~t~~W-~~l~~~g~~P~~R~~h~a~~~--------- 157 (617)
+........++.+ + +.+++.|+.++ .+.+||+.+... ......+ ... .-.+++..
T Consensus 97 --~~~~~~~v~~~~~~~~~~~~~l~~~~~d~------~i~v~d~~~~~~~~~~~~~~-~~~--~v~~~~~~~~~~~~~~~ 165 (379)
T 3jrp_A 97 --HAVHSASVNSVQWAPHEYGPLLLVASSDG------KVSVVEFKENGTTSPIIIDA-HAI--GVNSASWAPATIEEDGE 165 (379)
T ss_dssp --ECCCSSCEEEEEECCGGGCSEEEEEETTS------EEEEEECCTTSCCCEEEEEC-CTT--CEEEEEECCCC------
T ss_pred --ecCCCcceEEEEeCCCCCCCEEEEecCCC------cEEEEecCCCCceeeEEecC-CCC--ceEEEEEcCcccccccc
Confidence 2222222222332 2 56777776543 478888877632 1111001 011 11122222
Q ss_pred -----CCcEEEEEccCCCCCCCCeEEEEECCCC--cEEEeecCCCCCCCCcceEEEEE-C---CEEEEEecCCCCCccce
Q 007111 158 -----DDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGFHPSPRAGCCGVLC-G---TKWYIAGGGSRKKRHAE 226 (617)
Q Consensus 158 -----~~~~LyV~GG~~~~~~~n~v~~yD~~t~--~W~~~~~~g~~P~~R~~ha~v~~-~---~~IyI~GG~s~~~~~~~ 226 (617)
++. +++.|+.++ .|..||+.+. .|........ ....-.+++.. + +.+++.|+..+ .
T Consensus 166 ~~~~~~~~-~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~l~s~~~dg-----~ 232 (379)
T 3jrp_A 166 HNGTKESR-KFVTGGADN-----LVKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYLASVSQDR-----T 232 (379)
T ss_dssp ----CTTC-EEEEEETTS-----CEEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEETTS-----C
T ss_pred ccCCCCCC-EEEEEeCCC-----eEEEEEecCCCcceeeEEEEec--ccCcEeEEEECCCCCCCCeEEEEeCCC-----E
Confidence 245 778887765 3888887554 3554443211 11112233333 4 67888887654 3
Q ss_pred EEEEECCCCc--EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 227 TLIFDILKGE--WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 227 v~~yDl~~~~--W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
+.+||+.+.. +..... . . .........+.+.. ++.++++|+.++ .|.+|++..
T Consensus 233 i~iwd~~~~~~~~~~~~~-~-~-~~~~~~v~~~~~s~--~g~~l~~~~~dg----~i~iw~~~~ 287 (379)
T 3jrp_A 233 CIIWTQDNEQGPWKKTLL-K-E-EKFPDVLWRASWSL--SGNVLALSGGDN----KVTLWKENL 287 (379)
T ss_dssp EEEEEESSTTSCCEEEES-S-S-SCCSSCEEEEEECS--SSCCEEEEESSS----SEEEEEEEE
T ss_pred EEEEeCCCCCccceeeee-c-c-ccCCCcEEEEEEcC--CCCEEEEecCCC----cEEEEeCCC
Confidence 7788877652 222111 1 0 01112233344433 244666776653 578888764
No 34
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.19 E-value=0.015 Score=58.61 Aligned_cols=157 Identities=10% Similarity=-0.058 Sum_probs=100.7
Q ss_pred ceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEE
Q 007111 49 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHM 128 (617)
Q Consensus 49 ~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~ 128 (617)
..++...++.||+..|..+ .+..+|+.+.+-...- ++..-.+..++..+++||+.... .+.+++
T Consensus 57 tqGL~~~~~~Ly~stG~~g------~v~~iD~~Tgkv~~~~----l~~~~FgeGit~~g~~Ly~ltw~------~~~v~V 120 (268)
T 3nok_A 57 TQGLVFHQGHFFESTGHQG------TLRQLSLESAQPVWME----RLGNIFAEGLASDGERLYQLTWT------EGLLFT 120 (268)
T ss_dssp EEEEEEETTEEEEEETTTT------EEEECCSSCSSCSEEE----ECTTCCEEEEEECSSCEEEEESS------SCEEEE
T ss_pred cceEEEECCEEEEEcCCCC------EEEEEECCCCcEEeEE----CCCCcceeEEEEeCCEEEEEEcc------CCEEEE
Confidence 3566677899999998742 3899999988642221 23444566788889999998442 467999
Q ss_pred EECCCCcEE-EeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc-eEEE
Q 007111 129 FDLKSLTWL-PLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCGV 206 (617)
Q Consensus 129 yD~~t~~W~-~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~-ha~v 206 (617)
||+.+.+-. +++ .+-.+.+++.-++. ||+.-|. +.++.+|+.+.+-..-...+..+.+... --+.
T Consensus 121 ~D~~Tl~~~~ti~------~~~eGwGLt~Dg~~-L~vSdGs------~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe 187 (268)
T 3nok_A 121 WSGMPPQRERTTR------YSGEGWGLCYWNGK-LVRSDGG------TMLTFHEPDGFALVGAVQVKLRGQPVELINELE 187 (268)
T ss_dssp EETTTTEEEEEEE------CSSCCCCEEEETTE-EEEECSS------SEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EECCcCcEEEEEe------CCCceeEEecCCCE-EEEECCC------CEEEEEcCCCCeEEEEEEeCCCCcccccccccE
Confidence 999988754 332 22335566655554 8888652 4699999998765543322222222211 1234
Q ss_pred EECCEEEEEecCCCCCccceEEEEECCCCcEEE
Q 007111 207 LCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 239 (617)
Q Consensus 207 ~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~ 239 (617)
..++++|+--- ..+++.+.|+.+.+-..
T Consensus 188 ~~dG~lyanvw-----~s~~I~vIDp~TG~V~~ 215 (268)
T 3nok_A 188 CANGVIYANIW-----HSSDVLEIDPATGTVVG 215 (268)
T ss_dssp EETTEEEEEET-----TCSEEEEECTTTCBEEE
T ss_pred EeCCEEEEEEC-----CCCeEEEEeCCCCcEEE
Confidence 45888886421 13579999999886443
No 35
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.17 E-value=0.12 Score=53.74 Aligned_cols=230 Identities=12% Similarity=0.023 Sum_probs=115.9
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEE-ECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 93 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~-~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~ 93 (617)
.+.+||+.+.+......... ...+...-.+++. -++++|+.|+.+ ..+.+||+.+.+....-.
T Consensus 145 ~i~~~d~~~g~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~s~~~d------~~v~~~d~~~~~~~~~~~--- 208 (433)
T 3bws_A 145 GMDVLDINSGQTVRLSPPEK-------YKKKLGFVETISIPEHNELWVSQMQA------NAVHVFDLKTLAYKATVD--- 208 (433)
T ss_dssp SEEEEETTTCCEEEECCCHH-------HHTTCCEEEEEEEGGGTEEEEEEGGG------TEEEEEETTTCCEEEEEE---
T ss_pred eEEEEECCCCeEeeecCccc-------ccccCCceeEEEEcCCCEEEEEECCC------CEEEEEECCCceEEEEEc---
Confidence 59999998887664332100 0001111122222 267888887753 368999998865433221
Q ss_pred CCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCC
Q 007111 94 IPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSK 170 (617)
Q Consensus 94 ~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~ 170 (617)
.......+++.. +..+|+.++.+ ..+++||+.+.+....- +....-..++.. +++ .+++++...
T Consensus 209 -~~~~~~~~~~~~~~~~~l~~~~~~~------~~i~~~d~~~~~~~~~~-----~~~~~~~~~~~~~~g~-~l~~~~~~~ 275 (433)
T 3bws_A 209 -LTGKWSKILLYDPIRDLVYCSNWIS------EDISVIDRKTKLEIRKT-----DKIGLPRGLLLSKDGK-ELYIAQFSA 275 (433)
T ss_dssp -CSSSSEEEEEEETTTTEEEEEETTT------TEEEEEETTTTEEEEEC-----CCCSEEEEEEECTTSS-EEEEEEEES
T ss_pred -CCCCCeeEEEEcCCCCEEEEEecCC------CcEEEEECCCCcEEEEe-----cCCCCceEEEEcCCCC-EEEEEECCC
Confidence 111122233333 34666665432 36999999988765431 111112233333 455 444444322
Q ss_pred CCC---CCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCC
Q 007111 171 SKT---LNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPS 245 (617)
Q Consensus 171 ~~~---~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~ 245 (617)
... -..+++||+.+++....... +. ....++.. ++.+|+.++.. ..+.+||+.+.........
T Consensus 276 ~~~~~~dg~i~~~d~~~~~~~~~~~~---~~--~~~~~~~~~~g~~l~~~~~~~-----~~v~v~d~~~~~~~~~~~~-- 343 (433)
T 3bws_A 276 SNQESGGGRLGIYSMDKEKLIDTIGP---PG--NKRHIVSGNTENKIYVSDMCC-----SKIEVYDLKEKKVQKSIPV-- 343 (433)
T ss_dssp CTTCSCCEEEEEEETTTTEEEEEEEE---EE--CEEEEEECSSTTEEEEEETTT-----TEEEEEETTTTEEEEEEEC--
T ss_pred CccccCCCeEEEEECCCCcEEeeccC---CC--CcceEEECCCCCEEEEEecCC-----CEEEEEECCCCcEEEEecC--
Confidence 211 24699999988765544321 11 11122222 34688876654 3689999987654432211
Q ss_pred CCCCCCcceEEEEEeecCCcEEEEEcCCCCC----------CCCeEEEEECCCCcc
Q 007111 246 SSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE----------PSNQVEVLSIEKNES 291 (617)
Q Consensus 246 ~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~----------~~~dV~vyd~~~~~W 291 (617)
......+.+.. +...+++.+..... .-..|++||+.+.+.
T Consensus 344 -----~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~ 393 (433)
T 3bws_A 344 -----FDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV 393 (433)
T ss_dssp -----SSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred -----CCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence 11223344432 23445544432110 024899999987653
No 36
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.15 E-value=0.083 Score=52.37 Aligned_cols=187 Identities=13% Similarity=0.120 Sum_probs=100.1
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCccee-EEEEE-CCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGH-TVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~-s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
+++.++.|+.+ ..+.+||+.+..+..... +....... +++.. ++.+++.|+.++ .+.+||+.+
T Consensus 108 ~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~dg------~v~~~d~~~ 172 (337)
T 1gxr_A 108 DGCTLIVGGEA------STLSIWDLAAPTPRIKAE---LTSSAPACYALAISPDSKVCFSCCSDG------NIAVWDLHN 172 (337)
T ss_dssp TSSEEEEEESS------SEEEEEECCCC--EEEEE---EECSSSCEEEEEECTTSSEEEEEETTS------CEEEEETTT
T ss_pred CCCEEEEEcCC------CcEEEEECCCCCcceeee---cccCCCceEEEEECCCCCEEEEEeCCC------cEEEEeCCC
Confidence 45666677652 268899998887544331 11111111 22222 456677776543 488999988
Q ss_pred CcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE
Q 007111 134 LTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK 211 (617)
Q Consensus 134 ~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~ 211 (617)
.+....- ..... .-.+++.. ++. .++.|+.++ .+..||+.+..-...... +. .-.+++.. ++.
T Consensus 173 ~~~~~~~---~~~~~-~i~~~~~~~~~~-~l~~~~~dg-----~i~~~d~~~~~~~~~~~~---~~--~v~~~~~s~~~~ 237 (337)
T 1gxr_A 173 QTLVRQF---QGHTD-GASCIDISNDGT-KLWTGGLDN-----TVRSWDLREGRQLQQHDF---TS--QIFSLGYCPTGE 237 (337)
T ss_dssp TEEEEEE---CCCSS-CEEEEEECTTSS-EEEEEETTS-----EEEEEETTTTEEEEEEEC---SS--CEEEEEECTTSS
T ss_pred Cceeeee---ecccC-ceEEEEECCCCC-EEEEEecCC-----cEEEEECCCCceEeeecC---CC--ceEEEEECCCCC
Confidence 7654431 11111 11122333 455 667777653 599999988765443322 11 12233333 566
Q ss_pred EEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 212 WYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 212 IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.+++|+..+ .+.+||+.+..-..+.. .......+.+.. ++.+++.|+.++ .|.+||+.+.+
T Consensus 238 ~l~~~~~~~-----~i~~~~~~~~~~~~~~~-------~~~~v~~~~~~~--~~~~l~~~~~dg----~i~~~~~~~~~ 298 (337)
T 1gxr_A 238 WLAVGMESS-----NVEVLHVNKPDKYQLHL-------HESCVLSLKFAY--CGKWFVSTGKDN----LLNAWRTPYGA 298 (337)
T ss_dssp EEEEEETTS-----CEEEEETTSSCEEEECC-------CSSCEEEEEECT--TSSEEEEEETTS----EEEEEETTTCC
T ss_pred EEEEEcCCC-----cEEEEECCCCCeEEEcC-------CccceeEEEECC--CCCEEEEecCCC----cEEEEECCCCe
Confidence 777776543 48899998765433321 111233333432 234566776543 68889987765
No 37
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=97.13 E-value=0.077 Score=56.16 Aligned_cols=226 Identities=13% Similarity=0.082 Sum_probs=116.8
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEE-EECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLI-SWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v-~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..++++|.....-..+... ... -.+.+ .-+++.+++++.... ...++++|+.+.+...+.
T Consensus 159 ~~i~i~d~~g~~~~~l~~~------------~~~-v~~~~~Spdg~~la~~s~~~~---~~~i~~~d~~tg~~~~l~--- 219 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRS------------PQP-LMSPAWSPDGSKLAYVTFESG---RSALVIQTLANGAVRQVA--- 219 (415)
T ss_dssp EEEEEEETTSCSCEEEEEE------------SSC-EEEEEECTTSSEEEEEECTTS---SCEEEEEETTTCCEEEEE---
T ss_pred ceEEEEcCCCCCCEEEeCC------------CCc-ceeeEEcCCCCEEEEEEecCC---CcEEEEEECCCCcEEEee---
Confidence 5788899876554444321 011 11222 225555666655321 247999999998877665
Q ss_pred CCCCCcceeEEEEE-CC-EEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCC
Q 007111 93 DIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSS 169 (617)
Q Consensus 93 ~~P~~R~~~s~~~~-~~-~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~ 169 (617)
..+. ...+.+.- ++ .|++.+..++ ...++++|+.+.+...+. ..+ . .....+.. +++.|++.+..+
T Consensus 220 ~~~~--~~~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~~l~---~~~-~-~~~~~~~spdg~~l~~~s~~~ 288 (415)
T 2hqs_A 220 SFPR--HNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVT---DGR-S-NNTEPTWFPDSQNLAFTSDQA 288 (415)
T ss_dssp CCSS--CEEEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEEECC---CCS-S-CEEEEEECTTSSEEEEEECTT
T ss_pred cCCC--cccCEEEcCCCCEEEEEEecCC----CceEEEEECCCCCEEeCc---CCC-C-cccceEECCCCCEEEEEECCC
Confidence 2221 11222222 34 4555554433 257999999998877663 111 1 11122222 455344433222
Q ss_pred CCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCC
Q 007111 170 KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSV 248 (617)
Q Consensus 170 ~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p 248 (617)
+ ...++.+|+.++....+... .......+.. +++.+++++.... ...++++|+.+.....+.. .
T Consensus 289 g---~~~i~~~d~~~~~~~~l~~~-----~~~~~~~~~spdG~~l~~~~~~~g--~~~i~~~d~~~~~~~~l~~---~-- 353 (415)
T 2hqs_A 289 G---RPQVYKVNINGGAPQRITWE-----GSQNQDADVSSDGKFMVMVSSNGG--QQHIAKQDLATGGVQVLSS---T-- 353 (415)
T ss_dssp S---SCEEEEEETTSSCCEECCCS-----SSEEEEEEECTTSSEEEEEEECSS--CEEEEEEETTTCCEEECCC---S--
T ss_pred C---CcEEEEEECCCCCEEEEecC-----CCcccCeEECCCCCEEEEEECcCC--ceEEEEEECCCCCEEEecC---C--
Confidence 2 24699999988775544321 2222223322 4544444443211 2468999999988766531 1
Q ss_pred CCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 249 TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 249 ~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
. ....+.+..+ +..+++++.++. ...++++|+....
T Consensus 354 -~--~~~~~~~spd--g~~l~~~s~~~~-~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 354 -F--LDETPSLAPN--GTMVIYSSSQGM-GSVLNLVSTDGRF 389 (415)
T ss_dssp -S--SCEEEEECTT--SSEEEEEEEETT-EEEEEEEETTSCC
T ss_pred -C--CcCCeEEcCC--CCEEEEEEcCCC-ccEEEEEECCCCc
Confidence 1 2333444432 334555554321 3478999987654
No 38
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.08 E-value=0.094 Score=51.96 Aligned_cols=213 Identities=12% Similarity=0.072 Sum_probs=108.4
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..+.+||+.+.++...... ......-.+++.. ++..++.|+.+ ..+.+||+.+......-
T Consensus 119 ~~i~~~d~~~~~~~~~~~~----------~~~~~~i~~~~~~~~~~~l~~~~~d------g~v~~~d~~~~~~~~~~--- 179 (337)
T 1gxr_A 119 STLSIWDLAAPTPRIKAEL----------TSSAPACYALAISPDSKVCFSCCSD------GNIAVWDLHNQTLVRQF--- 179 (337)
T ss_dssp SEEEEEECCCC--EEEEEE----------ECSSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEE---
T ss_pred CcEEEEECCCCCcceeeec----------ccCCCceEEEEECCCCCEEEEEeCC------CcEEEEeCCCCceeeee---
Confidence 3688999988775433321 0011111223322 45666677653 24889999887644332
Q ss_pred CCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCC
Q 007111 93 DIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSK 170 (617)
Q Consensus 93 ~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~ 170 (617)
...... -.+++.. ++.+++.|+.+ ..+.+||+.+.+-.... ..+.+ -.+++.. ++. ++++|+.++
T Consensus 180 ~~~~~~-i~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~---~~~~~--v~~~~~s~~~~-~l~~~~~~~ 246 (337)
T 1gxr_A 180 QGHTDG-ASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQH---DFTSQ--IFSLGYCPTGE-WLAVGMESS 246 (337)
T ss_dssp CCCSSC-EEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEE---ECSSC--EEEEEECTTSS-EEEEEETTS
T ss_pred ecccCc-eEEEEECCCCCEEEEEecC------CcEEEEECCCCceEeee---cCCCc--eEEEEECCCCC-EEEEEcCCC
Confidence 111111 1222222 45666777643 35899999887644331 11111 1233333 445 677777654
Q ss_pred CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCC
Q 007111 171 SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVT 249 (617)
Q Consensus 171 ~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~ 249 (617)
.+..||+.+..-..+... ...-.+++.. ++.+++.|+.. ..+.+||+.+..-.....
T Consensus 247 -----~i~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~~~~~~~~~~~~~------- 304 (337)
T 1gxr_A 247 -----NVEVLHVNKPDKYQLHLH-----ESCVLSLKFAYCGKWFVSTGKD-----NLLNAWRTPYGASIFQSK------- 304 (337)
T ss_dssp -----CEEEEETTSSCEEEECCC-----SSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEE-------
T ss_pred -----cEEEEECCCCCeEEEcCC-----ccceeEEEECCCCCEEEEecCC-----CcEEEEECCCCeEEEEec-------
Confidence 499999987764433221 1112233333 56667777654 358899988776543221
Q ss_pred CCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEEC
Q 007111 250 SNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 286 (617)
Q Consensus 250 ~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~ 286 (617)
.......+.+.. ++.+++.|+.++ .|.+|++
T Consensus 305 ~~~~v~~~~~s~--~~~~l~~~~~dg----~i~iw~~ 335 (337)
T 1gxr_A 305 ESSSVLSCDISV--DDKYIVTGSGDK----KATVYEV 335 (337)
T ss_dssp CSSCEEEEEECT--TSCEEEEEETTS----CEEEEEE
T ss_pred CCCcEEEEEECC--CCCEEEEecCCC----eEEEEEE
Confidence 111233333432 244666777654 4566654
No 39
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.08 E-value=0.069 Score=53.06 Aligned_cols=164 Identities=15% Similarity=0.084 Sum_probs=105.0
Q ss_pred CCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCC
Q 007111 95 PVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTL 174 (617)
Q Consensus 95 P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~ 174 (617)
++.-+-+.+...++.+|+-.|..+. +.+..+|+.+.+=..-. ++|..-++.+++..+++ ||+....+
T Consensus 18 d~~~ftqGL~~~~~~LyestG~~g~----S~v~~vD~~tgkv~~~~---~l~~~~fgeGi~~~~~~-ly~ltw~~----- 84 (243)
T 3mbr_X 18 DTTAFTEGLFYLRGHLYESTGETGR----SSVRKVDLETGRILQRA---EVPPPYFGAGIVAWRDR-LIQLTWRN----- 84 (243)
T ss_dssp CTTCCEEEEEEETTEEEEEECCTTS----CEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTE-EEEEESSS-----
T ss_pred CCccccccEEEECCEEEEECCCCCC----ceEEEEECCCCCEEEEE---eCCCCcceeEEEEeCCE-EEEEEeeC-----
Confidence 3444555777788999999987654 57999999999865432 45666677778888877 99986554
Q ss_pred CeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEE-eecCCCCCCCCCcc
Q 007111 175 NDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV-AITSPSSSVTSNKG 253 (617)
Q Consensus 175 n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~-l~~~~~~~p~~r~~ 253 (617)
+.+++||+.+.+-..--.. +..+.+++..++.+|+.-| + +.++.+|+.+.+-.. +.......+... -
T Consensus 85 ~~v~v~D~~tl~~~~ti~~-----~~~Gwglt~dg~~L~vSdg-s-----~~l~~iDp~t~~~~~~I~V~~~g~~~~~-l 152 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRY-----PGEGWALTSDDSHLYMSDG-T-----AVIRKLDPDTLQQVGSIKVTAGGRPLDN-L 152 (243)
T ss_dssp SEEEEEETTTTEEEEEEEC-----SSCCCEEEECSSCEEEECS-S-----SEEEEECTTTCCEEEEEECEETTEECCC-E
T ss_pred CEEEEEECCcCcEEEEEeC-----CCCceEEeeCCCEEEEECC-C-----CeEEEEeCCCCeEEEEEEEccCCccccc-c
Confidence 5699999988765543332 2345677766788888765 2 569999999876433 322111111111 1
Q ss_pred eEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 254 FTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 254 ~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
--+..+ +++||+-- + ..++|.+.|+.+.+-
T Consensus 153 NeLe~~----~G~lyanv-w---~s~~I~vIDp~tG~V 182 (243)
T 3mbr_X 153 NELEWV----NGELLANV-W---LTSRIARIDPASGKV 182 (243)
T ss_dssp EEEEEE----TTEEEEEE-T---TTTEEEEECTTTCBE
T ss_pred eeeEEe----CCEEEEEE-C---CCCeEEEEECCCCCE
Confidence 112222 25566433 2 246899999988773
No 40
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.05 E-value=0.12 Score=53.65 Aligned_cols=220 Identities=11% Similarity=0.097 Sum_probs=109.9
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDI 94 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~ 94 (617)
.+.+||+.+.+....-. .... ....+.+++.+++.|+.+ ..+..||+.+..-.....
T Consensus 157 ~i~iwd~~~~~~~~~~~------------~~~~-~v~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~---- 213 (401)
T 4aez_A 157 LVDIYDVESQTKLRTMA------------GHQA-RVGCLSWNRHVLSSGSRS------GAIHHHDVRIANHQIGTL---- 213 (401)
T ss_dssp CEEEEETTTCCEEEEEC------------CCSS-CEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEE----
T ss_pred eEEEEECcCCeEEEEec------------CCCC-ceEEEEECCCEEEEEcCC------CCEEEEecccCcceeeEE----
Confidence 58889988776433221 0111 122334466677777653 368889987433211111
Q ss_pred CCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEEC-CcEEEEEcc-CCC
Q 007111 95 PVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGG-SSK 170 (617)
Q Consensus 95 P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~-~~~LyV~GG-~~~ 170 (617)
........+..+ ++.+++.|+.++ .+.+||..+..-...-. . ....-.+++... +..+++.|| ...
T Consensus 214 ~~~~~~v~~~~~~~~~~~l~s~~~d~------~v~iwd~~~~~~~~~~~--~--~~~~v~~~~~~p~~~~ll~~~~gs~d 283 (401)
T 4aez_A 214 QGHSSEVCGLAWRSDGLQLASGGNDN------VVQIWDARSSIPKFTKT--N--HNAAVKAVAWCPWQSNLLATGGGTMD 283 (401)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTCSSEEEEEC--C--CSSCCCEEEECTTSTTEEEEECCTTT
T ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCC------eEEEccCCCCCccEEec--C--CcceEEEEEECCCCCCEEEEecCCCC
Confidence 111111222222 567777777654 48899998765432210 1 111112333332 334777765 221
Q ss_pred CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCC
Q 007111 171 SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSV 248 (617)
Q Consensus 171 ~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p 248 (617)
..+..||..++........ .. .-.+++.. +..+++.+|... ..+.+||+.+..+........
T Consensus 284 ----~~i~i~d~~~~~~~~~~~~---~~--~v~~~~~s~~~~~l~~~~g~~d----g~i~v~~~~~~~~~~~~~~~~--- 347 (401)
T 4aez_A 284 ----KQIHFWNAATGARVNTVDA---GS--QVTSLIWSPHSKEIMSTHGFPD----NNLSIWSYSSSGLTKQVDIPA--- 347 (401)
T ss_dssp ----CEEEEEETTTCCEEEEEEC---SS--CEEEEEECSSSSEEEEEECTTT----CEEEEEEEETTEEEEEEEEEC---
T ss_pred ----CEEEEEECCCCCEEEEEeC---CC--cEEEEEECCCCCeEEEEeecCC----CcEEEEecCCccceeEEEecC---
Confidence 3599999988765544332 11 12233332 344555545433 358888888766655432111
Q ss_pred CCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 249 TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 249 ~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.......+.+.. ++.+++.||.++ .|.+|++.+.+
T Consensus 348 -h~~~v~~~~~s~--dg~~l~s~~~dg----~i~iw~~~~~~ 382 (401)
T 4aez_A 348 -HDTRVLYSALSP--DGRILSTAASDE----NLKFWRVYDGD 382 (401)
T ss_dssp -CSSCCCEEEECT--TSSEEEEECTTS----EEEEEECCC--
T ss_pred -CCCCEEEEEECC--CCCEEEEEeCCC----cEEEEECCCCc
Confidence 111222233332 344667777653 68899987765
No 41
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.03 E-value=0.19 Score=50.51 Aligned_cols=179 Identities=7% Similarity=-0.037 Sum_probs=105.1
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcE-EEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECW-SVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~g 92 (617)
+.+.++|+.+++=...-+ ++ +...+..++..++++|+..-. .+.+++||+.+.+- ..++
T Consensus 44 s~v~~iD~~tg~v~~~i~----------l~-~~~fgeGi~~~g~~lyv~t~~------~~~v~viD~~t~~v~~~i~--- 103 (266)
T 2iwa_A 44 SSVRQVALQTGKVENIHK----------MD-DSYFGEGLTLLNEKLYQVVWL------KNIGFIYDRRTLSNIKNFT--- 103 (266)
T ss_dssp CEEEEEETTTCCEEEEEE----------CC-TTCCEEEEEEETTEEEEEETT------CSEEEEEETTTTEEEEEEE---
T ss_pred CEEEEEECCCCCEEEEEe----------cC-CCcceEEEEEeCCEEEEEEec------CCEEEEEECCCCcEEEEEE---
Confidence 679999999887543222 11 122356677789999999643 24799999987753 2333
Q ss_pred CCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEE-EeecCCCCCCCCc-ccEEEEECCcEEEEEccCCC
Q 007111 93 DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWL-PLHCTGTGPSPRS-NHVAALYDDKNLLIFGGSSK 170 (617)
Q Consensus 93 ~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~-~l~~~g~~P~~R~-~h~a~~~~~~~LyV~GG~~~ 170 (617)
.+ ...+..++..++++|+.-| .+.++.+|+.+++-. .+.+ +..+.+.. -..+...++. +|+--..
T Consensus 104 -~g-~~~g~glt~Dg~~l~vs~g-------s~~l~viD~~t~~v~~~I~V-g~~~~p~~~~nele~~dg~-lyvn~~~-- 170 (266)
T 2iwa_A 104 -HQ-MKDGWGLATDGKILYGSDG-------TSILYEIDPHTFKLIKKHNV-KYNGHRVIRLNELEYINGE-VWANIWQ-- 170 (266)
T ss_dssp -CC-SSSCCEEEECSSSEEEECS-------SSEEEEECTTTCCEEEEEEC-EETTEECCCEEEEEEETTE-EEEEETT--
T ss_pred -CC-CCCeEEEEECCCEEEEECC-------CCeEEEEECCCCcEEEEEEE-CCCCcccccceeEEEECCE-EEEecCC--
Confidence 12 1234556666778998632 467999999997743 3322 22222211 1133344665 8766433
Q ss_pred CCCCCeEEEEECCCCcEEEeecCCC---------CCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECC
Q 007111 171 SKTLNDLYSLDFETMIWTRIKIRGF---------HPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDIL 233 (617)
Q Consensus 171 ~~~~n~v~~yD~~t~~W~~~~~~g~---------~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~ 233 (617)
.+.|.++|+.+++-......+. .+..-.-.+++.. ++++||.|+.. +.++..++.
T Consensus 171 ---~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~-----~~v~~i~l~ 236 (266)
T 2iwa_A 171 ---TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW-----PKLFEIKLH 236 (266)
T ss_dssp ---SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC-----SEEEEEEEE
T ss_pred ---CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCC-----CeEEEEEEe
Confidence 3579999999987554433210 0111112344444 56899998865 346666653
No 42
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.99 E-value=0.053 Score=54.45 Aligned_cols=168 Identities=15% Similarity=0.082 Sum_probs=102.5
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEE-EeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWS-VVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~g 92 (617)
+.+.++|+.+++=..--. ++ +..++.+++..+++||+.... .+.+++||+.+.+-. .++
T Consensus 65 S~v~~vD~~Tgkv~~~~~----------l~-~~~FgeGit~~g~~ly~ltw~------~~~v~v~D~~t~~~~~ti~--- 124 (262)
T 3nol_A 65 SSIRKVDIESGKTLQQIE----------LG-KRYFGEGISDWKDKIVGLTWK------NGLGFVWNIRNLRQVRSFN--- 124 (262)
T ss_dssp EEEEEECTTTCCEEEEEE----------CC-TTCCEEEEEEETTEEEEEESS------SSEEEEEETTTCCEEEEEE---
T ss_pred ceEEEEECCCCcEEEEEe----------cC-CccceeEEEEeCCEEEEEEee------CCEEEEEECccCcEEEEEE---
Confidence 578999999987543332 11 233456788889999999653 247999999887643 333
Q ss_pred CCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEE-EeecC-CCCCCCCcccEEEEECCcEEEEEccCCC
Q 007111 93 DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWL-PLHCT-GTGPSPRSNHVAALYDDKNLLIFGGSSK 170 (617)
Q Consensus 93 ~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~-~l~~~-g~~P~~R~~h~a~~~~~~~LyV~GG~~~ 170 (617)
.+-.+.+++..++.+|+.-| .+.++.+|+.+.+-. .+.+. ...|...-. .+...+++ ||+-- +.
T Consensus 125 ---~~~eG~glt~dg~~L~~SdG-------s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN-ELe~~~G~-lyan~-w~- 190 (262)
T 3nol_A 125 ---YDGEGWGLTHNDQYLIMSDG-------TPVLRFLDPESLTPVRTITVTAHGEELPELN-ELEWVDGE-IFANV-WQ- 190 (262)
T ss_dssp ---CSSCCCCEEECSSCEEECCS-------SSEEEEECTTTCSEEEEEECEETTEECCCEE-EEEEETTE-EEEEE-TT-
T ss_pred ---CCCCceEEecCCCEEEEECC-------CCeEEEEcCCCCeEEEEEEeccCCccccccc-eeEEECCE-EEEEE-cc-
Confidence 22366677777788888643 357999999998743 33321 111211111 23445666 77532 22
Q ss_pred CCCCCeEEEEECCCCcEEEeecCCCC--------CCCCcceEEEEE--CCEEEEEecC
Q 007111 171 SKTLNDLYSLDFETMIWTRIKIRGFH--------PSPRAGCCGVLC--GTKWYIAGGG 218 (617)
Q Consensus 171 ~~~~n~v~~yD~~t~~W~~~~~~g~~--------P~~R~~ha~v~~--~~~IyI~GG~ 218 (617)
.+.|.++|+.+++-......+.. +..-.-.+++.. .+++||.|-.
T Consensus 191 ---~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 191 ---TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp ---SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred ---CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 36899999999887665443211 111122345554 5789998754
No 43
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.96 E-value=0.27 Score=48.72 Aligned_cols=150 Identities=16% Similarity=0.193 Sum_probs=79.0
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
++.+++.|+.+. .+.+||+.+..-...- +........+.+ ++.+++.|+.++ .+.+||..+
T Consensus 118 ~~~~l~s~~~d~------~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~~wd~~~ 180 (312)
T 4ery_A 118 QSNLIVSGSFDE------SVRIWDVKTGKCLKTL-----PAHSDPVSAVHFNRDGSLIVSSSYDG------LCRIWDTAS 180 (312)
T ss_dssp SSSEEEEEETTS------CEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTT
T ss_pred CCCEEEEEeCCC------cEEEEECCCCEEEEEe-----cCCCCcEEEEEEcCCCCEEEEEeCCC------cEEEEECCC
Confidence 456677777532 4888998877533221 111112222222 456777777644 488999988
Q ss_pred CcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCE
Q 007111 134 LTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTK 211 (617)
Q Consensus 134 ~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~-~~~~ 211 (617)
.+....-.... .+.. ..++.. ++. .++.|+.++ .+..||..+......... ............. .++.
T Consensus 181 ~~~~~~~~~~~--~~~~-~~~~~~~~~~-~l~~~~~d~-----~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 250 (312)
T 4ery_A 181 GQCLKTLIDDD--NPPV-SFVKFSPNGK-YILAATLDN-----TLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSVTGGK 250 (312)
T ss_dssp CCEEEEECCSS--CCCE-EEEEECTTSS-EEEEEETTT-----EEEEEETTTTEEEEEECS-SCCSSSCCCEEEECSSSC
T ss_pred CceeeEEeccC--CCce-EEEEECCCCC-EEEEEcCCC-----eEEEEECCCCcEEEEEEe-cCCceEEEEEEEEeCCCc
Confidence 76543211111 1111 122222 445 666676653 599999988765443221 1111111112222 3566
Q ss_pred EEEEecCCCCCccceEEEEECCCCcE
Q 007111 212 WYIAGGGSRKKRHAETLIFDILKGEW 237 (617)
Q Consensus 212 IyI~GG~s~~~~~~~v~~yDl~~~~W 237 (617)
+++.|+..+ .+.+||+.+..-
T Consensus 251 ~l~sg~~dg-----~i~vwd~~~~~~ 271 (312)
T 4ery_A 251 WIVSGSEDN-----LVYIWNLQTKEI 271 (312)
T ss_dssp EEEECCTTS-----CEEEEETTTCCE
T ss_pred EEEEECCCC-----EEEEEECCCchh
Confidence 777776553 488999887653
No 44
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.86 E-value=0.091 Score=60.40 Aligned_cols=248 Identities=7% Similarity=-0.064 Sum_probs=128.4
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 93 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~ 93 (617)
.+.+||+.+..+..... + ...+...-++++.. ++.||| |.. ...+++||+.+++++..... .
T Consensus 384 Gl~~~~~~~~~~~~~~~-----~----~~~~~~~v~~i~~d~~g~lWi-gt~------~~Gl~~~~~~~~~~~~~~~~-~ 446 (781)
T 3v9f_A 384 GINVFENGKRVAIYNKE-----N----RELLSNSVLCSLKDSEGNLWF-GTY------LGNISYYNTRLKKFQIIELE-K 446 (781)
T ss_dssp CEEEEETTEEEEECC--------------CCCSBEEEEEECTTSCEEE-EET------TEEEEEECSSSCEEEECCST-T
T ss_pred cEEEEECCCCeEEEccC-----C----CCCCCcceEEEEECCCCCEEE-Eec------cCCEEEEcCCCCcEEEeccC-C
Confidence 47788887766655421 0 11222223455554 567776 432 13699999999999887531 1
Q ss_pred CCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCC--CCCCCCcccEEEEECCcEEEEEccCCC
Q 007111 94 IPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTG--TGPSPRSNHVAALYDDKNLLIFGGSSK 170 (617)
Q Consensus 94 ~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g--~~P~~R~~h~a~~~~~~~LyV~GG~~~ 170 (617)
++. ..-.+++.. ++.||+-. . .-+++||+.+.+|....... .++... -.+++.-.+..|+|. ....
T Consensus 447 ~~~-~~v~~i~~d~~g~lwigt-~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~d~~g~lWig-t~~~ 515 (781)
T 3v9f_A 447 NEL-LDVRVFYEDKNKKIWIGT-H-------AGVFVIDLASKKVIHHYDTSNSQLLENF-VRSIAQDSEGRFWIG-TFGG 515 (781)
T ss_dssp TCC-CCEEEEEECTTSEEEEEE-T-------TEEEEEESSSSSCCEEECTTTSSCSCSC-EEEEEECTTCCEEEE-ESSS
T ss_pred CCC-CeEEEEEECCCCCEEEEE-C-------CceEEEeCCCCeEEecccCcccccccce-eEEEEEcCCCCEEEE-EcCC
Confidence 111 122233333 46777742 1 35899999999887764211 111111 112222223336553 3322
Q ss_pred CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceE-EEEECCCCcEEEeecCCCCCC
Q 007111 171 SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAET-LIFDILKGEWSVAITSPSSSV 248 (617)
Q Consensus 171 ~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v-~~yDl~~~~W~~l~~~~~~~p 248 (617)
.+++||+.++.|..+......|... -.+++.. ++.||+... . -+ ++||+.+.++....... ..+
T Consensus 516 -----Gl~~~~~~~~~~~~~~~~~~l~~~~-i~~i~~d~~g~lWi~T~-~------Glv~~~d~~~~~~~~~~~~~-gl~ 581 (781)
T 3v9f_A 516 -----GVGIYTPDMQLVRKFNQYEGFCSNT-INQIYRSSKGQMWLATG-E------GLVCFPSARNFDYQVFQRKE-GLP 581 (781)
T ss_dssp -----CEEEECTTCCEEEEECTTTTCSCSC-EEEEEECTTSCEEEEET-T------EEEEESCTTTCCCEEECGGG-TCS
T ss_pred -----CEEEEeCCCCeEEEccCCCCCCCCe-eEEEEECCCCCEEEEEC-C------CceEEECCCCCcEEEccccC-CCC
Confidence 2999999999998876432222222 1233332 567777543 1 26 88999888877764311 111
Q ss_pred CCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcccc----------ccc-cccCccCCceeeeccCCC
Q 007111 249 TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSM----------GRR-STPNAKGPGQLLFEKRSS 314 (617)
Q Consensus 249 ~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W~~----------~w~-~~~~~~~~~v~vfGG~~~ 314 (617)
...-. +++.. .++.|++.+. . -+.+|++.+.++.. .+. .+.....+..++|||..+
T Consensus 582 -~~~i~-~i~~d--~~g~lW~~t~-~-----Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~G 648 (781)
T 3v9f_A 582 -NTHIR-AISED--KNGNIWASTN-T-----GISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYFGSING 648 (781)
T ss_dssp -CCCCC-EEEEC--SSSCEEEECS-S-----CEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEEEETTE
T ss_pred -CceEE-EEEEC--CCCCEEEEcC-C-----ceEEEECCCCceEEecccCCccccccccCceEECCCCEEEEECCCc
Confidence 11112 22332 2456776542 2 47788887665421 111 112213456688888744
No 45
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.83 E-value=0.091 Score=55.38 Aligned_cols=189 Identities=12% Similarity=0.196 Sum_probs=105.3
Q ss_pred EEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEEC
Q 007111 52 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL 131 (617)
Q Consensus 52 ~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~ 131 (617)
++..++..++.|+.+ ..+.+||..+..-...- ........+...++.+++.|+.++ .+.+||.
T Consensus 138 ~~~~d~~~l~~g~~d------g~i~iwd~~~~~~~~~~-----~~h~~~v~~l~~~~~~l~sg~~dg------~i~vwd~ 200 (435)
T 1p22_A 138 CLQYDDQKIVSGLRD------NTIKIWDKNTLECKRIL-----TGHTGSVLCLQYDERVIITGSSDS------TVRVWDV 200 (435)
T ss_dssp EEECCSSEEEEEESS------SCEEEEESSSCCEEEEE-----CCCSSCEEEEECCSSEEEEEETTS------CEEEEES
T ss_pred EEEECCCEEEEEeCC------CeEEEEeCCCCeEEEEE-----cCCCCcEEEEEECCCEEEEEcCCC------eEEEEEC
Confidence 445577778888763 25888898877643332 111222334444778888887654 3889999
Q ss_pred CCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEe-ecCCCCCCCCcceEEEEECC
Q 007111 132 KSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRI-KIRGFHPSPRAGCCGVLCGT 210 (617)
Q Consensus 132 ~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~-~~~g~~P~~R~~ha~v~~~~ 210 (617)
.+.+....- ......-.++.+.+. .++.|+.++ .+..||+.+..-... ... .........+.+++
T Consensus 201 ~~~~~~~~~-----~~h~~~v~~l~~~~~-~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~ 266 (435)
T 1p22_A 201 NTGEMLNTL-----IHHCEAVLHLRFNNG-MMVTCSKDR-----SIAVWDMASPTDITLRRVL---VGHRAAVNVVDFDD 266 (435)
T ss_dssp SSCCEEEEE-----CCCCSCEEEEECCTT-EEEEEETTS-----CEEEEECSSSSCCEEEEEE---CCCSSCEEEEEEET
T ss_pred CCCcEEEEE-----cCCCCcEEEEEEcCC-EEEEeeCCC-----cEEEEeCCCCCCceeeeEe---cCCCCcEEEEEeCC
Confidence 887654331 111122234445666 777888765 489999876543211 111 01111222333456
Q ss_pred EEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 211 KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 211 ~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
..++.|+.. ..+.+||+.+..-...... ......++... +.+++.|+.++ .|.+||+.+.+
T Consensus 267 ~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~------~~~~v~~~~~~----~~~l~~g~~dg----~i~iwd~~~~~ 327 (435)
T 1p22_A 267 KYIVSASGD-----RTIKVWNTSTCEFVRTLNG------HKRGIACLQYR----DRLVVSGSSDN----TIRLWDIECGA 327 (435)
T ss_dssp TEEEEEETT-----SEEEEEETTTCCEEEEEEC------CSSCEEEEEEE----TTEEEEEETTS----CEEEEETTTCC
T ss_pred CEEEEEeCC-----CeEEEEECCcCcEEEEEcC------CCCcEEEEEeC----CCEEEEEeCCC----eEEEEECCCCC
Confidence 666666654 3588999887654332210 11122333333 34677777654 58899988764
No 46
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=96.83 E-value=0.14 Score=49.40 Aligned_cols=229 Identities=11% Similarity=0.061 Sum_probs=119.1
Q ss_pred ccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEE-EECCEEEEEcccCCCCCCceEEEEEECCC-CcEEEee
Q 007111 12 LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLI-SWGKKVLLVGGKTDSGSDRVSVWTFDTET-ECWSVVE 89 (617)
Q Consensus 12 ~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v-~~g~~lyV~GG~~~~~~~~~~v~~yd~~t-~~W~~~~ 89 (617)
.-..+++||+.+.....+... +.. -.+++ .-+++.+++++. ..++++|+.+ .....+.
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~------------~~~-v~~~~~spdg~~l~~~~~-------~~i~~~d~~~~~~~~~~~ 79 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQT------------PEL-FEAPNWSPDGKYLLLNSE-------GLLYRLSLAGDPSPEKVD 79 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEE------------SSC-CEEEEECTTSSEEEEEET-------TEEEEEESSSCCSCEECC
T ss_pred cceeEEEEeCCCCceeeeccC------------Ccc-eEeeEECCCCCEEEEEcC-------CeEEEEeCCCCCCceEec
Confidence 345799999999887655431 111 12222 225555666542 2699999998 7766554
Q ss_pred ccCCCCC-CcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEcc
Q 007111 90 AKGDIPV-ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGG 167 (617)
Q Consensus 90 ~~g~~P~-~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG 167 (617)
. .+. .........-++..+++++.... ....+|.++..+.....+.. ... ....+.. +++.|++.++
T Consensus 80 ~---~~~~~~~~~~~~spdg~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~----~~~--~~~~~~spdg~~l~~~~~ 148 (297)
T 2ojh_A 80 T---GFATICNNDHGISPDGALYAISDKVEF--GKSAIYLLPSTGGTPRLMTK----NLP--SYWHGWSPDGKSFTYCGI 148 (297)
T ss_dssp C---TTCCCBCSCCEECTTSSEEEEEECTTT--SSCEEEEEETTCCCCEECCS----SSS--EEEEEECTTSSEEEEEEE
T ss_pred c---ccccccccceEECCCCCEEEEEEeCCC--CcceEEEEECCCCceEEeec----CCC--ccceEECCCCCEEEEEEC
Confidence 1 121 11122222235566666664333 24679999998877665531 111 2222333 4554555554
Q ss_pred CCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE-EEEEecCCCCCccceEEEEECCCCcEEEeecCCC
Q 007111 168 SSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK-WYIAGGGSRKKRHAETLIFDILKGEWSVAITSPS 245 (617)
Q Consensus 168 ~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~-IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~ 245 (617)
.++. -.+|.+|..+.....+... + .. ...++.. ++. +++.+...+ ...+|.+++.......+...
T Consensus 149 ~~~~---~~l~~~~~~~~~~~~~~~~---~-~~-~~~~~~s~dg~~l~~~~~~~~---~~~i~~~~~~~~~~~~~~~~-- 215 (297)
T 2ojh_A 149 RDQV---FDIYSMDIDSGVETRLTHG---E-GR-NDGPDYSPDGRWIYFNSSRTG---QMQIWRVRVDGSSVERITDS-- 215 (297)
T ss_dssp ETTE---EEEEEEETTTCCEEECCCS---S-SC-EEEEEECTTSSEEEEEECTTS---SCEEEEEETTSSCEEECCCC--
T ss_pred CCCc---eEEEEEECCCCcceEcccC---C-Cc-cccceECCCCCEEEEEecCCC---CccEEEECCCCCCcEEEecC--
Confidence 4322 3588888887777655432 1 11 1222332 444 444443222 35688888877776665311
Q ss_pred CCCCCCcceEEEEEeecCCcEEEEEcCCCCC-------CCCeEEEEECCCCcc
Q 007111 246 SSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE-------PSNQVEVLSIEKNES 291 (617)
Q Consensus 246 ~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~-------~~~dV~vyd~~~~~W 291 (617)
......+.+.. +...| ++++.++. ....++++|+.+.+.
T Consensus 216 -----~~~~~~~~~s~-dg~~l-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 216 -----AYGDWFPHPSP-SGDKV-VFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp -----SEEEEEEEECT-TSSEE-EEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred -----CcccCCeEECC-CCCEE-EEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 11223333432 23334 44443221 124689999887654
No 47
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.82 E-value=0.28 Score=49.68 Aligned_cols=189 Identities=13% Similarity=0.052 Sum_probs=98.7
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 135 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~ 135 (617)
++.+++.|+.+ ..+.++|+.+..-...-..+ +. ........-++.+++.|+.+ ..+.+||..+..
T Consensus 91 ~~~~l~s~s~D------~~i~lWd~~~~~~~~~~~~~--~~-~~~~~~~spdg~~l~~g~~d------g~v~i~~~~~~~ 155 (321)
T 3ow8_A 91 TLPIAASSSLD------AHIRLWDLENGKQIKSIDAG--PV-DAWTLAFSPDSQYLATGTHV------GKVNIFGVESGK 155 (321)
T ss_dssp SSSEEEEEETT------SEEEEEETTTTEEEEEEECC--TT-CCCCEEECTTSSEEEEECTT------SEEEEEETTTCS
T ss_pred CCCEEEEEeCC------CcEEEEECCCCCEEEEEeCC--Cc-cEEEEEECCCCCEEEEEcCC------CcEEEEEcCCCc
Confidence 34566666653 26888898887643322111 11 11112222345667777643 357889988776
Q ss_pred EEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEE
Q 007111 136 WLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWY 213 (617)
Q Consensus 136 W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~Iy 213 (617)
-...-. . ....-.+++.. +++ +++.|+.++ .|..||+.+++-...-.. ...+ -.+++.. ++.++
T Consensus 156 ~~~~~~-~---~~~~v~~~~~spdg~-~lasg~~dg-----~i~iwd~~~~~~~~~~~~--h~~~--v~~l~~spd~~~l 221 (321)
T 3ow8_A 156 KEYSLD-T---RGKFILSIAYSPDGK-YLASGAIDG-----IINIFDIATGKLLHTLEG--HAMP--IRSLTFSPDSQLL 221 (321)
T ss_dssp EEEEEE-C---SSSCEEEEEECTTSS-EEEEEETTS-----CEEEEETTTTEEEEEECC--CSSC--CCEEEECTTSCEE
T ss_pred eeEEec-C---CCceEEEEEECCCCC-EEEEEcCCC-----eEEEEECCCCcEEEEEcc--cCCc--eeEEEEcCCCCEE
Confidence 432210 0 11111223333 445 777787764 489999988765432221 1111 1233333 56777
Q ss_pred EEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 214 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 214 I~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
+.|+..+ .+.+||+.+....... .. .......+.+.. ++.+++.|+.++ .|.+||+.+.+
T Consensus 222 ~s~s~dg-----~i~iwd~~~~~~~~~~--~~----h~~~v~~~~~sp--~~~~l~s~s~D~----~v~iwd~~~~~ 281 (321)
T 3ow8_A 222 VTASDDG-----YIKIYDVQHANLAGTL--SG----HASWVLNVAFCP--DDTHFVSSSSDK----SVKVWDVGTRT 281 (321)
T ss_dssp EEECTTS-----CEEEEETTTCCEEEEE--CC----CSSCEEEEEECT--TSSEEEEEETTS----CEEEEETTTTE
T ss_pred EEEcCCC-----eEEEEECCCcceeEEE--cC----CCCceEEEEECC--CCCEEEEEeCCC----cEEEEeCCCCE
Confidence 7777553 4889998876544322 10 111223334432 234667777654 58888887655
No 48
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.82 E-value=0.12 Score=52.30 Aligned_cols=225 Identities=11% Similarity=0.017 Sum_probs=110.0
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..+.+||+.+..|..+... ......-.+++.. ++.+++.|+.+ ..+.+||+.+..+.....
T Consensus 30 ~~v~i~~~~~~~~~~~~~~----------~~h~~~v~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~-- 91 (372)
T 1k8k_C 30 HEVHIYEKSGNKWVQVHEL----------KEHNGQVTGVDWAPDSNRIVTCGTD------RNAYVWTLKGRTWKPTLV-- 91 (372)
T ss_dssp SEEEEEEEETTEEEEEEEE----------ECCSSCEEEEEEETTTTEEEEEETT------SCEEEEEEETTEEEEEEE--
T ss_pred CEEEEEeCCCCcEEeeeee----------cCCCCcccEEEEeCCCCEEEEEcCC------CeEEEEECCCCeeeeeEE--
Confidence 4699999998876655441 1111111233333 56666777653 247888888887765542
Q ss_pred CCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCc-EEEeecCCCCCCCCcccEEEEE-CCcEEEEEccC
Q 007111 93 DIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLT-WLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGS 168 (617)
Q Consensus 93 ~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~-W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~ 168 (617)
+........++.+ ++.+++.|+.++ .+.+||..+.. |...... ..+....-.+++.. ++. +++.|+.
T Consensus 92 -~~~~~~~v~~~~~~~~~~~l~~~~~d~------~v~i~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~-~l~~~~~ 162 (372)
T 1k8k_C 92 -ILRINRAARCVRWAPNEKKFAVGSGSR------VISICYFEQENDWWVCKHI-KKPIRSTVLSLDWHPNSV-LLAAGSC 162 (372)
T ss_dssp -CCCCSSCEEEEEECTTSSEEEEEETTS------SEEEEEEETTTTEEEEEEE-CTTCCSCEEEEEECTTSS-EEEEEET
T ss_pred -eecCCCceeEEEECCCCCEEEEEeCCC------EEEEEEecCCCcceeeeee-ecccCCCeeEEEEcCCCC-EEEEEcC
Confidence 1111222222222 456777777543 36666666544 4322110 11111111233333 445 7777776
Q ss_pred CCCCCCCeEEEEECC------------------CCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEE
Q 007111 169 SKSKTLNDLYSLDFE------------------TMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLI 229 (617)
Q Consensus 169 ~~~~~~n~v~~yD~~------------------t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~ 229 (617)
++ .+..||+. +..-. .... .....-.+++.. ++..++.|+.. ..+.+
T Consensus 163 dg-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i 228 (372)
T 1k8k_C 163 DF-----KCRIFSAYIKEVEERPAPTPWGSKMPFGELM--FESS--SSCGWVHGVCFSANGSRVAWVSHD-----STVCL 228 (372)
T ss_dssp TS-----CEEEEECCCTTTSCCCCCBTTBSCCCTTCEE--EECC--CCSSCEEEEEECSSSSEEEEEETT-----TEEEE
T ss_pred CC-----CEEEEEcccccccccccccccccccchhhhe--EecC--CCCCeEEEEEECCCCCEEEEEeCC-----CEEEE
Confidence 64 48889854 22211 1110 111112233332 55566666644 35889
Q ss_pred EECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC--Cccc
Q 007111 230 FDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK--NESS 292 (617)
Q Consensus 230 yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~--~~W~ 292 (617)
||+.+..-...-.. .......+.+.. ++.+++.| .++ .|.+|++.. .+|.
T Consensus 229 ~d~~~~~~~~~~~~------~~~~v~~~~~~~--~~~~l~~~-~d~----~i~i~~~~~~~~~~~ 280 (372)
T 1k8k_C 229 ADADKKMAVATLAS------ETLPLLAVTFIT--ESSLVAAG-HDC----FPVLFTYDSAAGKLS 280 (372)
T ss_dssp EEGGGTTEEEEEEC------SSCCEEEEEEEE--TTEEEEEE-TTS----SCEEEEEETTTTEEE
T ss_pred EECCCCceeEEEcc------CCCCeEEEEEec--CCCEEEEE-eCC----eEEEEEccCcCceEE
Confidence 99877654332211 111233333432 24555555 433 467778777 6663
No 49
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.053 Score=54.78 Aligned_cols=194 Identities=11% Similarity=0.110 Sum_probs=101.4
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--C--CEEEEEeecCCCCCccCeEEEEEC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--S--SVLILFGGEDGKRRKLNDLHMFDL 131 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~--~~IYv~GG~~~~~~~~~~v~~yD~ 131 (617)
++..++.|+.+. .+.+||.....+..+.. +........++.+ + +.+++.|+.++ .+.+||+
T Consensus 22 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~l~s~~~dg------~v~iwd~ 86 (379)
T 3jrp_A 22 YGKRLATCSSDK------TIKIFEVEGETHKLIDT---LTGHEGPVWRVDWAHPKFGTILASCSYDG------KVLIWKE 86 (379)
T ss_dssp SSSEEEEEETTS------CEEEEEEETTEEEEEEE---ECCCSSCEEEEEECCGGGCSEEEEEETTS------CEEEEEE
T ss_pred CCCEEEEEECCC------cEEEEecCCCcceeeeE---ecCCCCcEEEEEeCCCCCCCEEEEeccCC------EEEEEEc
Confidence 456666776532 47777776666665542 2222222223333 2 57777777654 4889999
Q ss_pred CCCcEEEeecCCCCCCCCcccEEEEE-C---CcEEEEEccCCCCCCCCeEEEEECCCCcEE-EeecCCCCCCCCcceEEE
Q 007111 132 KSLTWLPLHCTGTGPSPRSNHVAALY-D---DKNLLIFGGSSKSKTLNDLYSLDFETMIWT-RIKIRGFHPSPRAGCCGV 206 (617)
Q Consensus 132 ~t~~W~~l~~~g~~P~~R~~h~a~~~-~---~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~-~~~~~g~~P~~R~~ha~v 206 (617)
.+..|..+.. +........++.+ . +. +++.|+.++ .+..||+.+.... ..... .....-.+++
T Consensus 87 ~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~-----~i~v~d~~~~~~~~~~~~~---~~~~~v~~~~ 154 (379)
T 3jrp_A 87 ENGRWSQIAV---HAVHSASVNSVQWAPHEYGP-LLLVASSDG-----KVSVVEFKENGTTSPIIID---AHAIGVNSAS 154 (379)
T ss_dssp ETTEEEEEEE---ECCCSSCEEEEEECCGGGCS-EEEEEETTS-----EEEEEECCTTSCCCEEEEE---CCTTCEEEEE
T ss_pred CCCceeEeee---ecCCCcceEEEEeCCCCCCC-EEEEecCCC-----cEEEEecCCCCceeeEEec---CCCCceEEEE
Confidence 9998876642 1211112223333 2 45 777777764 4889998766321 11111 1111112223
Q ss_pred EE--------------CCEEEEEecCCCCCccceEEEEECCCC--cEEEeecCCCCCCCCCcceEEEEEeecC-CcEEEE
Q 007111 207 LC--------------GTKWYIAGGGSRKKRHAETLIFDILKG--EWSVAITSPSSSVTSNKGFTLVLVQHKE-KDFLVA 269 (617)
Q Consensus 207 ~~--------------~~~IyI~GG~s~~~~~~~v~~yDl~~~--~W~~l~~~~~~~p~~r~~~s~v~v~~~~-~~~L~I 269 (617)
.. ++..++.|+..+ .+.+||+.+. .|..+..... .......+.+...+ .+.+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~----h~~~v~~~~~sp~~~~~~~l~ 225 (379)
T 3jrp_A 155 WAPATIEEDGEHNGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTLEG----HSDWVRDVAWSPTVLLRSYLA 225 (379)
T ss_dssp ECCCC----------CTTCEEEEEETTS-----CEEEEEEETTTTEEEEEEEECC----CSSCEEEEEECCCCSSSEEEE
T ss_pred EcCccccccccccCCCCCCEEEEEeCCC-----eEEEEEecCCCcceeeEEEEec----ccCcEeEEEECCCCCCCCeEE
Confidence 22 367777877654 3777777543 3544432111 11223333443221 056778
Q ss_pred EcCCCCCCCCeEEEEECCCC
Q 007111 270 FGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 270 ~GG~~~~~~~dV~vyd~~~~ 289 (617)
.|+.++ .|.+||+.+.
T Consensus 226 s~~~dg----~i~iwd~~~~ 241 (379)
T 3jrp_A 226 SVSQDR----TCIIWTQDNE 241 (379)
T ss_dssp EEETTS----CEEEEEESST
T ss_pred EEeCCC----EEEEEeCCCC
Confidence 888764 4788887765
No 50
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.78 E-value=0.51 Score=47.11 Aligned_cols=229 Identities=14% Similarity=0.058 Sum_probs=117.5
Q ss_pred cceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEE-Eeecc
Q 007111 13 LDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWS-VVEAK 91 (617)
Q Consensus 13 ~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~ 91 (617)
...++++|+.+.+....-.. ...+ .+.+....++.+|+.++.. ..+++||+.+.+-. .++..
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~----------~~~~-~~~~~s~dg~~l~v~~~~~------~~v~~~d~~~~~~~~~~~~~ 130 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHN----------DLKP-FGATINNTTQTLWFGNTVN------SAVTAIDAKTGEVKGRLVLD 130 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEE----------SSCC-CSEEEETTTTEEEEEETTT------TEEEEEETTTCCEEEEEESC
T ss_pred CccEEEEcCCCCeEEEEEec----------CCCc-ceEEECCCCCEEEEEecCC------CEEEEEeCCCCeeEEEEecC
Confidence 34689999888764333221 0011 1122222245688876542 37999999887743 33321
Q ss_pred CC-CC---CCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEE
Q 007111 92 GD-IP---VARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLI 164 (617)
Q Consensus 92 g~-~P---~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV 164 (617)
.. .| .+...+.++.. ++.+|+.+... ...+++||+.+.+-...-. . ....-+.++.. +++.+|+
T Consensus 131 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~~---~-~~~~~~~~~~s~dg~~l~~ 201 (353)
T 3vgz_A 131 DRKRTEEVRPLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTAIQ---N-TGKMSTGLALDSEGKRLYT 201 (353)
T ss_dssp CCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEEEC---C-CCTTCCCCEEETTTTEEEE
T ss_pred CCccccccCCCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEEec---C-CCCccceEEECCCCCEEEE
Confidence 10 00 01112333333 35677765322 2459999998876443321 0 11111233333 5565666
Q ss_pred EccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEeec
Q 007111 165 FGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 242 (617)
Q Consensus 165 ~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~ 242 (617)
... + +.+++||+.+++-......+..........++.. ++.+|+.+... ..+++||+.+.+......
T Consensus 202 ~~~-~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~ 270 (353)
T 3vgz_A 202 TNA-D-----GELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA-----AEVLVVDTRNGNILAKVA 270 (353)
T ss_dssp ECT-T-----SEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS-----SEEEEEETTTCCEEEEEE
T ss_pred EcC-C-----CeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC-----CEEEEEECCCCcEEEEEE
Confidence 543 2 4689999988765544332211111222233333 45677765332 469999998876544332
Q ss_pred CCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 243 SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 243 ~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
.+ .+ .+ +.+. .+...+|+.+..+ +.|.+||+.+.+.
T Consensus 271 ~~----~~---~~-~~~s-~dg~~l~v~~~~~----~~v~~~d~~~~~~ 306 (353)
T 3vgz_A 271 AP----ES---LA-VLFN-PARNEAYVTHRQA----GKVSVIDAKSYKV 306 (353)
T ss_dssp CS----SC---CC-EEEE-TTTTEEEEEETTT----TEEEEEETTTTEE
T ss_pred cC----CC---ce-EEEC-CCCCEEEEEECCC----CeEEEEECCCCeE
Confidence 11 11 12 2333 2345677766433 4789999887663
No 51
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.78 E-value=0.3 Score=49.14 Aligned_cols=69 Identities=9% Similarity=0.014 Sum_probs=38.7
Q ss_pred CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCC--
Q 007111 158 DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILK-- 234 (617)
Q Consensus 158 ~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~-- 234 (617)
++. +++.|+.++ .+..||+.+......-.. ... .-.+++.. ++.+++.| ..+ .+.+||+..
T Consensus 213 ~~~-~l~~~~~d~-----~i~i~d~~~~~~~~~~~~---~~~-~v~~~~~~~~~~~l~~~-~d~-----~i~i~~~~~~~ 276 (372)
T 1k8k_C 213 NGS-RVAWVSHDS-----TVCLADADKKMAVATLAS---ETL-PLLAVTFITESSLVAAG-HDC-----FPVLFTYDSAA 276 (372)
T ss_dssp SSS-EEEEEETTT-----EEEEEEGGGTTEEEEEEC---SSC-CEEEEEEEETTEEEEEE-TTS-----SCEEEEEETTT
T ss_pred CCC-EEEEEeCCC-----EEEEEECCCCceeEEEcc---CCC-CeEEEEEecCCCEEEEE-eCC-----eEEEEEccCcC
Confidence 445 667777653 499999987765433321 111 11233333 66655555 332 366777776
Q ss_pred CcEEEeec
Q 007111 235 GEWSVAIT 242 (617)
Q Consensus 235 ~~W~~l~~ 242 (617)
..|..+..
T Consensus 277 ~~~~~~~~ 284 (372)
T 1k8k_C 277 GKLSFGGR 284 (372)
T ss_dssp TEEEECCC
T ss_pred ceEEEeec
Confidence 88877643
No 52
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.77 E-value=0.65 Score=48.79 Aligned_cols=146 Identities=12% Similarity=0.106 Sum_probs=79.4
Q ss_pred ECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCC
Q 007111 106 ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFET 184 (617)
Q Consensus 106 ~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t 184 (617)
.++.+++.|+.++ .+.+||..+.+-...- ...... -.+++.. ++. .++.|+.++. +..||+.+
T Consensus 278 ~~~~~l~~~~~d~------~i~vwd~~~~~~~~~~---~~~~~~-v~~~~~~~~~~-~l~sg~~dg~-----i~vwd~~~ 341 (464)
T 3v7d_B 278 GHGNIVVSGSYDN------TLIVWDVAQMKCLYIL---SGHTDR-IYSTIYDHERK-RCISASMDTT-----IRIWDLEN 341 (464)
T ss_dssp EETTEEEEEETTS------CEEEEETTTTEEEEEE---CCCSSC-EEEEEEETTTT-EEEEEETTSC-----EEEEETTT
T ss_pred CCCCEEEEEeCCC------eEEEEECCCCcEEEEe---cCCCCC-EEEEEEcCCCC-EEEEEeCCCc-----EEEEECCC
Confidence 3455666776544 4899999877644331 111111 1233333 445 6777777643 99999988
Q ss_pred CcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCC
Q 007111 185 MIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEK 264 (617)
Q Consensus 185 ~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~ 264 (617)
++-...-.. .......+.+++..++.|+..+ .+.+||+.+..-...... . .....+.+...
T Consensus 342 ~~~~~~~~~-----h~~~v~~~~~~~~~l~s~s~dg-----~v~vwd~~~~~~~~~~~~------~-~~~~~~~~~~~-- 402 (464)
T 3v7d_B 342 GELMYTLQG-----HTALVGLLRLSDKFLVSAAADG-----SIRGWDANDYSRKFSYHH------T-NLSAITTFYVS-- 402 (464)
T ss_dssp TEEEEEECC-----CSSCEEEEEECSSEEEEEETTS-----EEEEEETTTCCEEEEEEC------T-TCCCEEEEEEC--
T ss_pred CcEEEEEeC-----CCCcEEEEEEcCCEEEEEeCCC-----cEEEEECCCCceeeeecC------C-CCccEEEEEeC--
Confidence 764433221 1112233445666777777553 488999987653322210 1 11122233322
Q ss_pred cEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 265 DFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 265 ~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
+.+++.|+ + +.|.+||+.+.+-
T Consensus 403 ~~~l~~~~-d----g~i~iwd~~~g~~ 424 (464)
T 3v7d_B 403 DNILVSGS-E----NQFNIYNLRSGKL 424 (464)
T ss_dssp SSEEEEEE-T----TEEEEEETTTCCE
T ss_pred CCEEEEec-C----CeEEEEECCCCcE
Confidence 34666666 3 3799999988763
No 53
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.72 E-value=0.13 Score=59.05 Aligned_cols=225 Identities=8% Similarity=-0.038 Sum_probs=123.0
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..+++||+.+.++...... ..+...-.+++.. ++.||+-.. ..+++||+.+..|.......
T Consensus 427 ~Gl~~~~~~~~~~~~~~~~----------~~~~~~v~~i~~d~~g~lwigt~--------~Gl~~~~~~~~~~~~~~~~~ 488 (781)
T 3v9f_A 427 GNISYYNTRLKKFQIIELE----------KNELLDVRVFYEDKNKKIWIGTH--------AGVFVIDLASKKVIHHYDTS 488 (781)
T ss_dssp EEEEEECSSSCEEEECCST----------TTCCCCEEEEEECTTSEEEEEET--------TEEEEEESSSSSCCEEECTT
T ss_pred CCEEEEcCCCCcEEEeccC----------CCCCCeEEEEEECCCCCEEEEEC--------CceEEEeCCCCeEEecccCc
Confidence 3578888888888776531 1112222445444 467776432 25999999999887775321
Q ss_pred C--CCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCC
Q 007111 93 D--IPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSS 169 (617)
Q Consensus 93 ~--~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~ 169 (617)
. ++... -.+++.. ++.||+-. . . .-+++||+.+.+|+.......+|.... .+.+.-.+..|++... .
T Consensus 489 ~~~~~~~~-i~~i~~d~~g~lWigt-~-~-----~Gl~~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWi~T~-~ 558 (781)
T 3v9f_A 489 NSQLLENF-VRSIAQDSEGRFWIGT-F-G-----GGVGIYTPDMQLVRKFNQYEGFCSNTI-NQIYRSSKGQMWLATG-E 558 (781)
T ss_dssp TSSCSCSC-EEEEEECTTCCEEEEE-S-S-----SCEEEECTTCCEEEEECTTTTCSCSCE-EEEEECTTSCEEEEET-T
T ss_pred ccccccce-eEEEEEcCCCCEEEEE-c-C-----CCEEEEeCCCCeEEEccCCCCCCCCee-EEEEECCCCCEEEEEC-C
Confidence 1 11111 1222222 45777642 2 1 238999999999988753223332221 1222212333666432 2
Q ss_pred CCCCCCeE-EEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCC
Q 007111 170 KSKTLNDL-YSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSS 247 (617)
Q Consensus 170 ~~~~~n~v-~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~ 247 (617)
.+ ++||+.++++..+....-.|.... .+++.. ++.||+.+. .-+.+||+.+..+....... ..
T Consensus 559 ------Glv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t~-------~Gl~~~~~~~~~~~~~~~~d-Gl 623 (781)
T 3v9f_A 559 ------GLVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIWASTN-------TGISCYITSKKCFYTYDHSN-NI 623 (781)
T ss_dssp ------EEEEESCTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEEEECS-------SCEEEEETTTTEEEEECGGG-TC
T ss_pred ------CceEEECCCCCcEEEccccCCCCCceE-EEEEECCCCCEEEEcC-------CceEEEECCCCceEEecccC-Cc
Confidence 36 999999998887754322333222 344444 577887653 23889999999888765322 11
Q ss_pred CCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 248 VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 248 p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
+.......++... .++.|| |||.+ -+.+|++..-
T Consensus 624 ~~~~f~~~~~~~~--~~G~l~-~g~~~-----Gl~~f~p~~~ 657 (781)
T 3v9f_A 624 PQGSFISGCVTKD--HNGLIY-FGSIN-----GLCFFNPDIA 657 (781)
T ss_dssp CSSCEEEEEEEEC--TTSCEE-EEETT-----EEEEECSCCG
T ss_pred cccccccCceEEC--CCCEEE-EECCC-----ceEEEChhhc
Confidence 2222222333333 234454 67764 4778888653
No 54
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.71 E-value=0.46 Score=47.98 Aligned_cols=185 Identities=11% Similarity=0.103 Sum_probs=95.6
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 134 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~ 134 (617)
++..++.|+.+ ..+.+||..+..-...-. .. ...-.+++. -++.+++.|+.++ .+.+||+.+.
T Consensus 133 dg~~l~~g~~d------g~v~i~~~~~~~~~~~~~---~~-~~~v~~~~~spdg~~lasg~~dg------~i~iwd~~~~ 196 (321)
T 3ow8_A 133 DSQYLATGTHV------GKVNIFGVESGKKEYSLD---TR-GKFILSIAYSPDGKYLASGAIDG------IINIFDIATG 196 (321)
T ss_dssp TSSEEEEECTT------SEEEEEETTTCSEEEEEE---CS-SSCEEEEEECTTSSEEEEEETTS------CEEEEETTTT
T ss_pred CCCEEEEEcCC------CcEEEEEcCCCceeEEec---CC-CceEEEEEECCCCCEEEEEcCCC------eEEEEECCCC
Confidence 55666777652 258888887765332210 01 111112222 2567777777654 4889999887
Q ss_pred cEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEE
Q 007111 135 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWY 213 (617)
Q Consensus 135 ~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~Iy 213 (617)
+-...- .+. ..+ -.+++...+..+++.|+.++. |.+||+.+......-.. ....-.+++.. ++..+
T Consensus 197 ~~~~~~-~~h-~~~--v~~l~~spd~~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~----h~~~v~~~~~sp~~~~l 263 (321)
T 3ow8_A 197 KLLHTL-EGH-AMP--IRSLTFSPDSQLLVTASDDGY-----IKIYDVQHANLAGTLSG----HASWVLNVAFCPDDTHF 263 (321)
T ss_dssp EEEEEE-CCC-SSC--CCEEEECTTSCEEEEECTTSC-----EEEEETTTCCEEEEECC----CSSCEEEEEECTTSSEE
T ss_pred cEEEEE-ccc-CCc--eeEEEEcCCCCEEEEEcCCCe-----EEEEECCCcceeEEEcC----CCCceEEEEECCCCCEE
Confidence 643321 111 111 113333333337788877643 89999987765433221 11111223333 56677
Q ss_pred EEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEEC
Q 007111 214 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 286 (617)
Q Consensus 214 I~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~ 286 (617)
+.|+..+ .+.+||+.+..-...- . ........+.+.. ++..++.||.++ .|.+||.
T Consensus 264 ~s~s~D~-----~v~iwd~~~~~~~~~~--~----~h~~~v~~v~~s~--~g~~l~s~~~d~----~i~vwd~ 319 (321)
T 3ow8_A 264 VSSSSDK-----SVKVWDVGTRTCVHTF--F----DHQDQVWGVKYNG--NGSKIVSVGDDQ----EIHIYDC 319 (321)
T ss_dssp EEEETTS-----CEEEEETTTTEEEEEE--C----CCSSCEEEEEECT--TSSEEEEEETTC----CEEEEEC
T ss_pred EEEeCCC-----cEEEEeCCCCEEEEEE--c----CCCCcEEEEEECC--CCCEEEEEeCCC----eEEEEeC
Confidence 7777553 4888998876543321 1 0112233344432 234566777654 4666764
No 55
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=96.71 E-value=0.67 Score=47.52 Aligned_cols=174 Identities=15% Similarity=0.158 Sum_probs=96.6
Q ss_pred ceEEEEECCCCc--EEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEee
Q 007111 14 DDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVE 89 (617)
Q Consensus 14 ~~v~~yd~~t~~--W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~ 89 (617)
..+++||+.+.+ |..-... .....+...+.+..++.||+ |.. ...++.||+.+.+ |+...
T Consensus 153 g~l~~~d~~tG~~~W~~~~~~---------~~~~~~~~~~~~~~~~~v~~-g~~------~g~l~~~d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 153 GQLQALNEADGAVKWTVNLDM---------PSLSLRGESAPTTAFGAAVV-GGD------NGRVSAVLMEQGQMIWQQRI 216 (376)
T ss_dssp SEEEEEETTTCCEEEEEECCC--------------CCCCCCEEETTEEEE-CCT------TTEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCCcEEEEEeCCC---------CceeecCCCCcEEECCEEEE-EcC------CCEEEEEECCCCcEEEEEec
Confidence 369999987765 8765431 00111111233445777776 322 1269999998765 76543
Q ss_pred ccCCCCCCc--------ceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEeecCCCCCCCCcccEEEEECC
Q 007111 90 AKGDIPVAR--------SGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALYDD 159 (617)
Q Consensus 90 ~~g~~P~~R--------~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~h~a~~~~~ 159 (617)
..|... .....+..++.+|+.+. ...+++||+.+.+ |..- .+. ....+..++
T Consensus 217 ---~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~-------~g~l~~~d~~tG~~~w~~~-----~~~---~~~~~~~~~ 278 (376)
T 3q7m_A 217 ---SQATGSTEIDRLSDVDTTPVVVNGVVFALAY-------NGNLTALDLRSGQIMWKRE-----LGS---VNDFIVDGN 278 (376)
T ss_dssp ---CC-----------CCCCCCEEETTEEEEECT-------TSCEEEEETTTCCEEEEEC-----CCC---EEEEEEETT
T ss_pred ---ccCCCCcccccccccCCCcEEECCEEEEEec-------CcEEEEEECCCCcEEeecc-----CCC---CCCceEECC
Confidence 112111 12233456788887641 2358999998774 8753 111 123334455
Q ss_pred cEEEEEccCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCc-
Q 007111 160 KNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE- 236 (617)
Q Consensus 160 ~~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~- 236 (617)
. +|+.... ..++.||+.+++ |..... ..+...+.+..++.+|+... ...++.||+.+.+
T Consensus 279 ~-l~~~~~~------g~l~~~d~~tG~~~w~~~~~-----~~~~~~~~~~~~~~l~v~~~------~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 279 R-IYLVDQN------DRVMALTIDGGVTLWTQSDL-----LHRLLTSPVLYNGNLVVGDS------EGYLHWINVEDGRF 340 (376)
T ss_dssp E-EEEEETT------CCEEEEETTTCCEEEEECTT-----TTSCCCCCEEETTEEEEECT------TSEEEEEETTTCCE
T ss_pred E-EEEEcCC------CeEEEEECCCCcEEEeeccc-----CCCcccCCEEECCEEEEEeC------CCeEEEEECCCCcE
Confidence 5 7776532 249999998765 664311 11222334456888887642 1358999988775
Q ss_pred -EEE
Q 007111 237 -WSV 239 (617)
Q Consensus 237 -W~~ 239 (617)
|..
T Consensus 341 ~~~~ 344 (376)
T 3q7m_A 341 VAQQ 344 (376)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 655
No 56
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=96.71 E-value=0.18 Score=52.08 Aligned_cols=191 Identities=13% Similarity=0.071 Sum_probs=99.6
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCccee-EEEEE-CCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGH-TVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~-s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
++.+++.|+.+ ..+.+||+.+..-...- ....... +++.. ++.+++.|+.++ .+.+||+.+
T Consensus 108 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~s~s~d~------~i~iwd~~~ 170 (420)
T 3vl1_A 108 QMRRFILGTTE------GDIKVLDSNFNLQREID-----QAHVSEITKLKFFPSGEALISSSQDM------QLKIWSVKD 170 (420)
T ss_dssp SSCEEEEEETT------SCEEEECTTSCEEEEET-----TSSSSCEEEEEECTTSSEEEEEETTS------EEEEEETTT
T ss_pred CCCEEEEEECC------CCEEEEeCCCcceeeec-----ccccCccEEEEECCCCCEEEEEeCCC------eEEEEeCCC
Confidence 66778888753 24888898876543331 1111222 22222 456777776543 588999886
Q ss_pred CcEE-EeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE----
Q 007111 134 LTWL-PLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL---- 207 (617)
Q Consensus 134 ~~W~-~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~---- 207 (617)
.+-. .+. + ....-.+++.. ++. +++.|+.++ .+..||+.++.-.........+... -.+++.
T Consensus 171 ~~~~~~~~--~---h~~~v~~~~~~~~~~-~l~s~~~d~-----~v~iwd~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~ 238 (420)
T 3vl1_A 171 GSNPRTLI--G---HRATVTDIAIIDRGR-NVLSASLDG-----TIRLWECGTGTTIHTFNRKENPHDG-VNSIALFVGT 238 (420)
T ss_dssp CCCCEEEE--C---CSSCEEEEEEETTTT-EEEEEETTS-----CEEEEETTTTEEEEEECBTTBTTCC-EEEEEEEECC
T ss_pred CcCceEEc--C---CCCcEEEEEEcCCCC-EEEEEcCCC-----cEEEeECCCCceeEEeecCCCCCCC-ccEEEEecCC
Confidence 5422 121 1 11111233333 455 677777764 3899999877654432211111111 111111
Q ss_pred ------------------ECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEE
Q 007111 208 ------------------CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVA 269 (617)
Q Consensus 208 ------------------~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I 269 (617)
-++.+++.|+..+ .+.+||+.+..-...... .......++.+...+ ..+++
T Consensus 239 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~-~~~l~ 307 (420)
T 3vl1_A 239 DRQLHEISTSKKNNLEFGTYGKYVIAGHVSG-----VITVHNVFSKEQTIQLPS-----KFTCSCNSLTVDGNN-ANYIY 307 (420)
T ss_dssp CSSCGGGCCCCCCTTCSSCTTEEEEEEETTS-----CEEEEETTTCCEEEEECC-----TTSSCEEEEEECSSC-TTEEE
T ss_pred cceeeecccCcccceEEcCCCCEEEEEcCCC-----eEEEEECCCCceeEEccc-----ccCCCceeEEEeCCC-CCEEE
Confidence 1566777776553 388999987653332210 011223344443222 32667
Q ss_pred EcCCCCCCCCeEEEEECCCCc
Q 007111 270 FGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 270 ~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.|+.++ .|.+||+.+..
T Consensus 308 ~g~~dg----~i~vwd~~~~~ 324 (420)
T 3vl1_A 308 AGYENG----MLAQWDLRSPE 324 (420)
T ss_dssp EEETTS----EEEEEETTCTT
T ss_pred EEeCCC----eEEEEEcCCCc
Confidence 777653 68999998754
No 57
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=96.70 E-value=0.3 Score=48.31 Aligned_cols=221 Identities=8% Similarity=-0.049 Sum_probs=115.3
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..+++||+.+. ...+.. +...-.+++.. ++++|+.... ...+++||+.+.+...+....
T Consensus 50 ~~i~~~~~~~~-~~~~~~-------------~~~~~~~l~~~~dg~l~v~~~~------~~~i~~~d~~~g~~~~~~~~~ 109 (296)
T 3e5z_A 50 NRTWAWSDDGQ-LSPEMH-------------PSHHQNGHCLNKQGHLIACSHG------LRRLERQREPGGEWESIADSF 109 (296)
T ss_dssp TEEEEEETTSC-EEEEES-------------SCSSEEEEEECTTCCEEEEETT------TTEEEEECSTTCCEEEEECEE
T ss_pred CEEEEEECCCC-eEEEEC-------------CCCCcceeeECCCCcEEEEecC------CCeEEEEcCCCCcEEEEeecc
Confidence 36888998877 555442 11112344433 5678776432 136999999888877664211
Q ss_pred C-CCCCcceeEEEEECCEEEEE----eecCC-------CCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CC
Q 007111 93 D-IPVARSGHTVVRASSVLILF----GGEDG-------KRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DD 159 (617)
Q Consensus 93 ~-~P~~R~~~s~~~~~~~IYv~----GG~~~-------~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~ 159 (617)
. .+..+....++.-++.+|+. |.... .......+++||+. .+...+. ..+..+ ...+.. ++
T Consensus 110 ~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~--~~~~~~---~gi~~s~dg 183 (296)
T 3e5z_A 110 EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI--RDRVKP---NGLAFLPSG 183 (296)
T ss_dssp TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE--CCCSSE---EEEEECTTS
T ss_pred CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEee--cCCCCC---ccEEECCCC
Confidence 1 11111122222235788886 43210 11113579999987 6655543 122111 233333 45
Q ss_pred cEEEEEccCCCCCCCCeEEEEECC-CCcE-EEeec-CCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCC
Q 007111 160 KNLLIFGGSSKSKTLNDLYSLDFE-TMIW-TRIKI-RGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKG 235 (617)
Q Consensus 160 ~~LyV~GG~~~~~~~n~v~~yD~~-t~~W-~~~~~-~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~ 235 (617)
+ +++.+... +.+++||+. ++.. ..... ......|+ .++.. ++.+|+..+ ..+++||+...
T Consensus 184 ~-~lv~~~~~-----~~i~~~~~~~~g~~~~~~~~~~~~~~~p~---~i~~d~~G~l~v~~~-------~~v~~~~~~g~ 247 (296)
T 3e5z_A 184 N-LLVSDTGD-----NATHRYCLNARGETEYQGVHFTVEPGKTD---GLRVDAGGLIWASAG-------DGVHVLTPDGD 247 (296)
T ss_dssp C-EEEEETTT-----TEEEEEEECSSSCEEEEEEEECCSSSCCC---SEEEBTTSCEEEEET-------TEEEEECTTSC
T ss_pred C-EEEEeCCC-----CeEEEEEECCCCcCcCCCeEeeCCCCCCC---eEEECCCCCEEEEcC-------CeEEEECCCCC
Confidence 5 44444332 469999986 5665 22211 11111122 23333 678888762 35899999866
Q ss_pred cEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 236 EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 236 ~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
....+.. + .. ...+++...+...||+... +.+++|++++..
T Consensus 248 ~~~~~~~-~----~~---~~~~~f~~~d~~~L~v~t~------~~l~~~~~~~~~ 288 (296)
T 3e5z_A 248 ELGRVLT-P----QT---TSNLCFGGPEGRTLYMTVS------TEFWSIETNVRG 288 (296)
T ss_dssp EEEEEEC-S----SC---CCEEEEESTTSCEEEEEET------TEEEEEECSCCB
T ss_pred EEEEEEC-C----CC---ceeEEEECCCCCEEEEEcC------CeEEEEEccccc
Confidence 5555542 1 11 2334443334456776543 268999998876
No 58
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=96.67 E-value=0.31 Score=48.32 Aligned_cols=233 Identities=11% Similarity=0.048 Sum_probs=105.5
Q ss_pred ceEEEEECC--CCcEEEccccccCCCCCCCCCCCcccceEEEEE-C-CEEEEEcccCCCCCCceEEEEEECCCC-cEEEe
Q 007111 14 DDVQVLNFD--RFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-G-KKVLLVGGKTDSGSDRVSVWTFDTETE-CWSVV 88 (617)
Q Consensus 14 ~~v~~yd~~--t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g-~~lyV~GG~~~~~~~~~~v~~yd~~t~-~W~~~ 88 (617)
..+.+|++. +.++..+... +.+.. -..++.. + ..+|+.+.. . ..+.+||+... .....
T Consensus 60 ~~v~~~~~~~~~~~~~~~~~~----------~~~~~-~~~~~~s~dg~~l~~~~~~-~-----~~i~~~d~~~~~~~~~~ 122 (343)
T 1ri6_A 60 FRVLAYRIAPDDGALTFAAES----------ALPGS-LTHISTDHQGQFVFVGSYN-A-----GNVSVTRLEDGLPVGVV 122 (343)
T ss_dssp TEEEEEEECTTTCCEEEEEEE----------ECSSC-CSEEEECTTSSEEEEEETT-T-----TEEEEEEEETTEEEEEE
T ss_pred CeEEEEEecCCCCceeecccc----------ccCCC-CcEEEEcCCCCEEEEEecC-C-----CeEEEEECCCCcccccc
Confidence 467777776 6777665441 11111 1223222 3 456665432 1 24777776322 22222
Q ss_pred eccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCC-CcEEEee--cCCCCCCCCcccEEEEE-CCcEE
Q 007111 89 EAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS-LTWLPLH--CTGTGPSPRSNHVAALY-DDKNL 162 (617)
Q Consensus 89 ~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t-~~W~~l~--~~g~~P~~R~~h~a~~~-~~~~L 162 (617)
.. ++.....+.++.. +..+|+.+.. ...+.+||+.+ .++..+. .. ..+....-..++.. +++++
T Consensus 123 ~~---~~~~~~~~~~~~s~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~pdg~~l 192 (343)
T 1ri6_A 123 DV---VEGLDGCHSANISPDNRTLWVPALK------QDRICLFTVSDDGHLVAQDPAEV-TTVEGAGPRHMVFHPNEQYA 192 (343)
T ss_dssp EE---ECCCTTBCCCEECTTSSEEEEEEGG------GTEEEEEEECTTSCEEEEEEEEE-ECSTTCCEEEEEECTTSSEE
T ss_pred cc---ccCCCCceEEEECCCCCEEEEecCC------CCEEEEEEecCCCceeeeccccc-ccCCCCCcceEEECCCCCEE
Confidence 21 1111112223332 3466665422 24589999987 6665331 00 11111111123333 45557
Q ss_pred EEEccCCCCCCCCeEEEEECC--CCcEEEeecCCCCCCC---Ccce-EEEEE--CCEEEEEecCCCCCccceEEEEECC-
Q 007111 163 LIFGGSSKSKTLNDLYSLDFE--TMIWTRIKIRGFHPSP---RAGC-CGVLC--GTKWYIAGGGSRKKRHAETLIFDIL- 233 (617)
Q Consensus 163 yV~GG~~~~~~~n~v~~yD~~--t~~W~~~~~~g~~P~~---R~~h-a~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~- 233 (617)
|+.+..+ +.+.+||+. ++.+.........|.. .... .++.. +..+|+.+... ..+.+||+.
T Consensus 193 ~~~~~~~-----~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~-----~~i~v~d~~~ 262 (343)
T 1ri6_A 193 YCVNELN-----SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA-----SLITVFSVSE 262 (343)
T ss_dssp EEEETTT-----TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT-----TEEEEEEECT
T ss_pred EEEeCCC-----CEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCC-----CEEEEEEEcC
Confidence 7766443 358889884 4555433221111221 1122 23333 34666665332 357888877
Q ss_pred -CCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEE--ECCCCcccc
Q 007111 234 -KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVL--SIEKNESSM 293 (617)
Q Consensus 234 -~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vy--d~~~~~W~~ 293 (617)
+..+..+...+... . ...+.+.. +...||+.++.+ +.|.+| |+.+.++..
T Consensus 263 ~~~~~~~~~~~~~~~----~-~~~~~~s~-dg~~l~~~~~~~----~~v~v~~~d~~~g~~~~ 315 (343)
T 1ri6_A 263 DGSVLSKEGFQPTET----Q-PRGFNVDH-SGKYLIAAGQKS----HHISVYEIVGEQGLLHE 315 (343)
T ss_dssp TSCCEEEEEEEECSS----S-CCCEEECT-TSSEEEEECTTT----CEEEEEEEETTTTEEEE
T ss_pred CCCceEEeeeecCCC----c-cceEEECC-CCCEEEEecCCC----CeEEEEEEcCCCceeeE
Confidence 45566654322111 1 12233332 335566655433 245555 666666543
No 59
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.013 Score=67.49 Aligned_cols=226 Identities=9% Similarity=0.064 Sum_probs=112.5
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEE-EC--CEEEEEcccCCCCCCceEEEEEECCCCcEEEeecc
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WG--KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 91 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~-~g--~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 91 (617)
.+.+||.....+..+... ......-.++.. .+ +.+++.||.++ .+.+||+.++.|..+..
T Consensus 32 ~I~vwd~~~~~~~~~~~l----------~~h~~~V~~l~~s~~~~~~~l~s~s~Dg------~I~vwd~~~~~~~~~~~- 94 (753)
T 3jro_A 32 TIKIFEVEGETHKLIDTL----------TGHEGPVWRVDWAHPKFGTILASCSYDG------KVLIWKEENGRWSQIAV- 94 (753)
T ss_dssp EEEEEEEETTEEEEEEEE----------CCCSSCEEEEEECCTTSCSEEEEEETTS------CEEEEEEETTEEEEEEE-
T ss_pred cEEEEecCCCCCccceec----------cCCcCceEEEEecCCCCCCEEEEEeCCC------eEEEEECCCCccccccc-
Confidence 588899887777665541 111111123332 23 56777777632 48888888888766653
Q ss_pred CCCCCCcceeEEEEE--C--CEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE----------
Q 007111 92 GDIPVARSGHTVVRA--S--SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY---------- 157 (617)
Q Consensus 92 g~~P~~R~~~s~~~~--~--~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~---------- 157 (617)
.........++.+ + +.+++.||.++ .+.+||..+..-.........+.+ -.+++..
T Consensus 95 --~~~h~~~V~~v~~sp~~~~~~l~sgs~dg------~I~vwdl~~~~~~~~~~~~~~~~~--v~~l~~~p~~~~~~~~~ 164 (753)
T 3jro_A 95 --HAVHSASVNSVQWAPHEYGPLLLVASSDG------KVSVVEFKENGTTSPIIIDAHAIG--VNSASWAPATIEEDGEH 164 (753)
T ss_dssp --ECCCSSCEEEEEECCGGGCSEEEEEETTS------EEEEEECCSSSCCCCEEEECCSSC--EEEEEECCCC-------
T ss_pred --ccCCCCCeEEEEECCCCCCCEEEEEeCCC------cEEEEEeecCCCcceeEeecCCCc--eEEEEecCccccccccc
Confidence 2222222233333 2 66778887644 478888876621111000011111 1122222
Q ss_pred ----CCcEEEEEccCCCCCCCCeEEEEECCCC--cEEEeecCCCCCCCCcceEEEEE-C---CEEEEEecCCCCCccceE
Q 007111 158 ----DDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGFHPSPRAGCCGVLC-G---TKWYIAGGGSRKKRHAET 227 (617)
Q Consensus 158 ----~~~~LyV~GG~~~~~~~n~v~~yD~~t~--~W~~~~~~g~~P~~R~~ha~v~~-~---~~IyI~GG~s~~~~~~~v 227 (617)
++. +++.|+.++. |..||..++ .+........ ....-.+++.. + +.+++.||..+ .+
T Consensus 165 ~~~~d~~-~l~sgs~dg~-----I~iwd~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~~~~l~s~s~Dg-----~I 231 (753)
T 3jro_A 165 NGTKESR-KFVTGGADNL-----VKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYLASVSQDR-----TC 231 (753)
T ss_dssp --CGGGC-CEEEEETTSC-----EEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEESSS-----CE
T ss_pred ccCCCCC-EEEEEECCCe-----EEEEeccCCcccceeeeeecC--CCCcEEEEEeccCCCCCCEEEEEecCC-----EE
Confidence 234 6777777643 888887554 3444433211 11122233333 4 68888888654 37
Q ss_pred EEEECCCCc--EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 228 LIFDILKGE--WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 228 ~~yDl~~~~--W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
.+||+.+.. +..... ...........+.+.. ++.+++.||.++ .|.+|++...
T Consensus 232 ~iwd~~~~~~~~~~~~~---~~~~~~~~v~~l~~sp--dg~~l~s~s~Dg----~I~vwd~~~~ 286 (753)
T 3jro_A 232 IIWTQDNEQGPWKKTLL---KEEKFPDVLWRASWSL--SGNVLALSGGDN----KVTLWKENLE 286 (753)
T ss_dssp EEEEESSSSSCCBCCBS---SSSCCSSCCCCEEECT--TTCCEEEECSSS----CEECCBCCSS
T ss_pred EEecCCCCCCcceeEEe---ccCCCCCceEEEEEcC--CCCEEEEEcCCC----EEEEEecCCC
Confidence 788876642 111110 0001111222333332 344667777654 5788888743
No 60
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.65 E-value=0.64 Score=46.40 Aligned_cols=191 Identities=8% Similarity=0.002 Sum_probs=97.4
Q ss_pred ceEEEEECCCCcEEE-ccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeec
Q 007111 14 DDVQVLNFDRFSWTA-ASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEA 90 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~-l~~~~~~~p~~~~~~~p~r~~hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 90 (617)
+.+.+||+.+.+-.. +.......|. ...+..-++++.. ++.+|+.+... ...+++||+.+.+-...-.
T Consensus 111 ~~v~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~~ 181 (353)
T 3vgz_A 111 SAVTAIDAKTGEVKGRLVLDDRKRTE----EVRPLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTAIQ 181 (353)
T ss_dssp TEEEEEETTTCCEEEEEESCCCCCCS----SCCCCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEEEC
T ss_pred CEEEEEeCCCCeeEEEEecCCCcccc----ccCCCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEEec
Confidence 478999998876432 2211000000 0011111333332 45777776321 2369999998876443321
Q ss_pred cCCCCCCcceeEEEE--ECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEcc
Q 007111 91 KGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGG 167 (617)
Q Consensus 91 ~g~~P~~R~~~s~~~--~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG 167 (617)
. .....+.++. .+..+|+... .+.+++||+.+.+-...-..+..........+++. +++.+|+.+.
T Consensus 182 ---~-~~~~~~~~~~s~dg~~l~~~~~-------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 250 (353)
T 3vgz_A 182 ---N-TGKMSTGLALDSEGKRLYTTNA-------DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS 250 (353)
T ss_dssp ---C-CCTTCCCCEEETTTTEEEEECT-------TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES
T ss_pred ---C-CCCccceEEECCCCCEEEEEcC-------CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC
Confidence 0 1111122222 2456766532 24688999998864332111111111111223333 4555766653
Q ss_pred CCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEe
Q 007111 168 SSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 240 (617)
Q Consensus 168 ~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l 240 (617)
.+ +.+++||+.+++....... +.+. .++.. ++.+|+.+... ..+.+||+.+.+....
T Consensus 251 ~~-----~~v~~~d~~~~~~~~~~~~---~~~~---~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~~~~~~~ 309 (353)
T 3vgz_A 251 KA-----AEVLVVDTRNGNILAKVAA---PESL---AVLFNPARNEAYVTHRQA-----GKVSVIDAKSYKVVKT 309 (353)
T ss_dssp SS-----SEEEEEETTTCCEEEEEEC---SSCC---CEEEETTTTEEEEEETTT-----TEEEEEETTTTEEEEE
T ss_pred CC-----CEEEEEECCCCcEEEEEEc---CCCc---eEEECCCCCEEEEEECCC-----CeEEEEECCCCeEEEE
Confidence 32 5699999988877655443 2222 23332 45688776433 4689999988765543
No 61
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.61 E-value=0.42 Score=48.49 Aligned_cols=146 Identities=12% Similarity=0.134 Sum_probs=76.8
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 134 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~ 134 (617)
++. ++.|+.+ ..+.+||+.+......- ...... -.+++. -++.+++.|+.++ .+.+||+.+.
T Consensus 154 ~~~-l~s~s~d------~~i~~wd~~~~~~~~~~---~~h~~~-v~~~~~~~~~~~l~sg~~d~------~v~~wd~~~~ 216 (340)
T 1got_B 154 DNQ-IVTSSGD------TTCALWDIETGQQTTTF---TGHTGD-VMSLSLAPDTRLFVSGACDA------SAKLWDVREG 216 (340)
T ss_dssp TTE-EEEEETT------SCEEEEETTTTEEEEEE---CCCSSC-EEEEEECTTSSEEEEEETTS------CEEEEETTTC
T ss_pred CCc-EEEEECC------CcEEEEECCCCcEEEEE---cCCCCc-eEEEEECCCCCEEEEEeCCC------cEEEEECCCC
Confidence 555 4555542 24888898887643322 111111 112222 2467778887654 4888998877
Q ss_pred cEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCE
Q 007111 135 TWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTK 211 (617)
Q Consensus 135 ~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~~~ 211 (617)
.-...- .+. ...-.+++.. ++. +++.|+.++. +..||+.+..-...... +........+.+ ++.
T Consensus 217 ~~~~~~-~~h---~~~v~~v~~~p~~~-~l~s~s~d~~-----v~iwd~~~~~~~~~~~~---~~~~~~v~~~~~s~~g~ 283 (340)
T 1got_B 217 MCRQTF-TGH---ESDINAICFFPNGN-AFATGSDDAT-----CRLFDLRADQELMTYSH---DNIICGITSVSFSKSGR 283 (340)
T ss_dssp SEEEEE-CCC---SSCEEEEEECTTSS-EEEEEETTSC-----EEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSS
T ss_pred eeEEEE-cCC---cCCEEEEEEcCCCC-EEEEEcCCCc-----EEEEECCCCcEEEEEcc---CCcccceEEEEECCCCC
Confidence 643321 011 1111123333 345 7788887654 89999987654332221 111122223333 567
Q ss_pred EEEEecCCCCCccceEEEEECCCCc
Q 007111 212 WYIAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 212 IyI~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
+++.|+.. ..+.+||+.+..
T Consensus 284 ~l~~g~~d-----~~i~vwd~~~~~ 303 (340)
T 1got_B 284 LLLAGYDD-----FNCNVWDALKAD 303 (340)
T ss_dssp EEEEEETT-----SEEEEEETTTCC
T ss_pred EEEEECCC-----CeEEEEEcccCc
Confidence 77777654 358899987654
No 62
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.47 E-value=1.1 Score=47.01 Aligned_cols=185 Identities=11% Similarity=0.068 Sum_probs=97.5
Q ss_pred EECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECC
Q 007111 54 SWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLK 132 (617)
Q Consensus 54 ~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~ 132 (617)
..++.+++.|+.+. .+.+||+.+..-...- ....... .+++.. ++..++.|+.++ .+.+||+.
T Consensus 277 ~~~~~~l~~~~~d~------~i~vwd~~~~~~~~~~---~~~~~~v-~~~~~~~~~~~l~sg~~dg------~i~vwd~~ 340 (464)
T 3v7d_B 277 SGHGNIVVSGSYDN------TLIVWDVAQMKCLYIL---SGHTDRI-YSTIYDHERKRCISASMDT------TIRIWDLE 340 (464)
T ss_dssp EEETTEEEEEETTS------CEEEEETTTTEEEEEE---CCCSSCE-EEEEEETTTTEEEEEETTS------CEEEEETT
T ss_pred cCCCCEEEEEeCCC------eEEEEECCCCcEEEEe---cCCCCCE-EEEEEcCCCCEEEEEeCCC------cEEEEECC
Confidence 33455666666532 4888998876543322 1111111 222222 456667776544 48999998
Q ss_pred CCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEE
Q 007111 133 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKW 212 (617)
Q Consensus 133 t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~I 212 (617)
+.+-...- ......-.++.+.+. .++.|+.++ .+..||+.+..-...... ...........++.+
T Consensus 341 ~~~~~~~~-----~~h~~~v~~~~~~~~-~l~s~s~dg-----~v~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 405 (464)
T 3v7d_B 341 NGELMYTL-----QGHTALVGLLRLSDK-FLVSAAADG-----SIRGWDANDYSRKFSYHH----TNLSAITTFYVSDNI 405 (464)
T ss_dssp TTEEEEEE-----CCCSSCEEEEEECSS-EEEEEETTS-----EEEEEETTTCCEEEEEEC----TTCCCEEEEEECSSE
T ss_pred CCcEEEEE-----eCCCCcEEEEEEcCC-EEEEEeCCC-----cEEEEECCCCceeeeecC----CCCccEEEEEeCCCE
Confidence 87643321 111122244455667 777777764 499999987654333221 122222333446777
Q ss_pred EEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEE
Q 007111 213 YIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLS 285 (617)
Q Consensus 213 yI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd 285 (617)
++.|+ . ..+.+||+.+.+-......+ .......+.+. ...+++.|+.++ ..-++++|
T Consensus 406 l~~~~-d-----g~i~iwd~~~g~~~~~~~~~-----~~~~v~~v~~~---~~~l~~~~~~~g--~~~i~~ld 462 (464)
T 3v7d_B 406 LVSGS-E-----NQFNIYNLRSGKLVHANILK-----DADQIWSVNFK---GKTLVAAVEKDG--QSFLEILD 462 (464)
T ss_dssp EEEEE-T-----TEEEEEETTTCCEEESCTTT-----TCSEEEEEEEE---TTEEEEEEEETT--EEEEEEEE
T ss_pred EEEec-C-----CeEEEEECCCCcEEehhhcc-----CCCcEEEEEec---CCEEEEEEEeCC--eEEEEEee
Confidence 77766 2 35899999887654421111 12223333343 355666665543 23455555
No 63
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.45 E-value=0.2 Score=56.88 Aligned_cols=220 Identities=9% Similarity=0.049 Sum_probs=110.6
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..+.+||..+......-.. . ... -.+++.. ++..+++||.+ ..+.+||..+......-.
T Consensus 35 g~v~iwd~~~~~~~~~~~~---------~--~~~-v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~-- 94 (814)
T 3mkq_A 35 GRVEIWNYETQVEVRSIQV---------T--ETP-VRAGKFIARKNWIIVGSDD------FRIRVFNYNTGEKVVDFE-- 94 (814)
T ss_dssp SEEEEEETTTTEEEEEEEC---------C--SSC-EEEEEEEGGGTEEEEEETT------SEEEEEETTTCCEEEEEE--
T ss_pred CEEEEEECCCCceEEEEec---------C--CCc-EEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEEEe--
Confidence 3689999888765332210 0 111 1223222 55666777652 368899988887544321
Q ss_pred CCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCC-cEEEeecCCCCCCCCcccEEEEEC-CcEEEEEccCC
Q 007111 93 DIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL-TWLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSS 169 (617)
Q Consensus 93 ~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~-~W~~l~~~g~~P~~R~~h~a~~~~-~~~LyV~GG~~ 169 (617)
. .... -.+++. -++..++.|+.+ ..+.+||..++ .....-. + ....-.+++... +..++++|+.+
T Consensus 95 ~-~~~~-v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~-~---~~~~v~~~~~~p~~~~~l~~~~~d 162 (814)
T 3mkq_A 95 A-HPDY-IRSIAVHPTKPYVLSGSDD------LTVKLWNWENNWALEQTFE-G---HEHFVMCVAFNPKDPSTFASGCLD 162 (814)
T ss_dssp C-CSSC-EEEEEECSSSSEEEEEETT------SEEEEEEGGGTSEEEEEEE-C---CSSCEEEEEEETTEEEEEEEEETT
T ss_pred c-CCCC-EEEEEEeCCCCEEEEEcCC------CEEEEEECCCCceEEEEEc-C---CCCcEEEEEEEcCCCCEEEEEeCC
Confidence 1 1111 112222 245556666643 35888998776 3333211 1 111112333333 34477777766
Q ss_pred CCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE---CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCC
Q 007111 170 KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC---GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS 246 (617)
Q Consensus 170 ~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~---~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~ 246 (617)
+ .+..||+.+......... ........++.. ++.++++|+.. ..+.+||+.+.........
T Consensus 163 g-----~v~vwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~--- 226 (814)
T 3mkq_A 163 R-----TVKVWSLGQSTPNFTLTT---GQERGVNYVDYYPLPDKPYMITASDD-----LTIKIWDYQTKSCVATLEG--- 226 (814)
T ss_dssp S-----EEEEEETTCSSCSEEEEC---CCTTCCCEEEECCSTTCCEEEEECTT-----SEEEEEETTTTEEEEEEEC---
T ss_pred C-----eEEEEECCCCcceeEEec---CCCCCEEEEEEEECCCCCEEEEEeCC-----CEEEEEECCCCcEEEEEcC---
Confidence 4 489999866543322221 111222233332 56677777654 3588999887653332110
Q ss_pred CCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 247 SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 247 ~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.......+.+... +.+++.||.++ .|.+||+.+.+
T Consensus 227 ---~~~~v~~~~~~~~--~~~l~~~~~dg----~v~vwd~~~~~ 261 (814)
T 3mkq_A 227 ---HMSNVSFAVFHPT--LPIIISGSEDG----TLKIWNSSTYK 261 (814)
T ss_dssp ---CSSCEEEEEECSS--SSEEEEEETTS----CEEEEETTTCS
T ss_pred ---CCCCEEEEEEcCC--CCEEEEEeCCC----eEEEEECCCCc
Confidence 1122334444332 33667777654 47777776543
No 64
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=96.44 E-value=0.58 Score=48.16 Aligned_cols=218 Identities=12% Similarity=0.049 Sum_probs=107.4
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcE-EEeeccC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECW-SVVEAKG 92 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~g 92 (617)
.+.+||+.+..-...-. .....-.+++.. ++.+++.|+.+ ..+.+||+.+..- ..+.
T Consensus 120 ~i~iwd~~~~~~~~~~~------------~h~~~v~~~~~~~~~~~l~s~s~d------~~i~iwd~~~~~~~~~~~--- 178 (420)
T 3vl1_A 120 DIKVLDSNFNLQREIDQ------------AHVSEITKLKFFPSGEALISSSQD------MQLKIWSVKDGSNPRTLI--- 178 (420)
T ss_dssp CEEEECTTSCEEEEETT------------SSSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTCCCCEEEE---
T ss_pred CEEEEeCCCcceeeecc------------cccCccEEEEECCCCCEEEEEeCC------CeEEEEeCCCCcCceEEc---
Confidence 58888887765433321 011111233332 45666677653 2688899876542 1221
Q ss_pred CCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEE---------------
Q 007111 93 DIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL--------------- 156 (617)
Q Consensus 93 ~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~--------------- 156 (617)
. ... .-.+++.. ++.+++.|+.++ .+.+||+.+.+-...-.....+... -...+.
T Consensus 179 ~-h~~-~v~~~~~~~~~~~l~s~~~d~------~v~iwd~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~ 249 (420)
T 3vl1_A 179 G-HRA-TVTDIAIIDRGRNVLSASLDG------TIRLWECGTGTTIHTFNRKENPHDG-VNSIALFVGTDRQLHEISTSK 249 (420)
T ss_dssp C-CSS-CEEEEEEETTTTEEEEEETTS------CEEEEETTTTEEEEEECBTTBTTCC-EEEEEEEECCCSSCGGGCCCC
T ss_pred C-CCC-cEEEEEEcCCCCEEEEEcCCC------cEEEeECCCCceeEEeecCCCCCCC-ccEEEEecCCcceeeecccCc
Confidence 0 111 11222222 456666777654 3888998877633321100001110 011111
Q ss_pred -------ECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE-EEEEecCCCCCccceE
Q 007111 157 -------YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK-WYIAGGGSRKKRHAET 227 (617)
Q Consensus 157 -------~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~-IyI~GG~s~~~~~~~v 227 (617)
-++. +++.|+.++. +..||+.+..-...... .....-.+++.. ++. +++.|+.. ..+
T Consensus 250 v~~~~~s~~~~-~l~~~~~dg~-----i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~g~~d-----g~i 315 (420)
T 3vl1_A 250 KNNLEFGTYGK-YVIAGHVSGV-----ITVHNVFSKEQTIQLPS---KFTCSCNSLTVDGNNANYIYAGYEN-----GML 315 (420)
T ss_dssp CCTTCSSCTTE-EEEEEETTSC-----EEEEETTTCCEEEEECC---TTSSCEEEEEECSSCTTEEEEEETT-----SEE
T ss_pred ccceEEcCCCC-EEEEEcCCCe-----EEEEECCCCceeEEccc---ccCCCceeEEEeCCCCCEEEEEeCC-----CeE
Confidence 1344 6677776543 99999987764433221 111122233333 344 67777654 358
Q ss_pred EEEECCCCc--EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 228 LIFDILKGE--WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 228 ~~yDl~~~~--W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
.+||+.+.. ...+... ......++... .+.+++.||.++ .|.+|++...
T Consensus 316 ~vwd~~~~~~~~~~~~~~------~~~~v~~~~~~---~~~~l~s~~~d~----~v~iw~~~~~ 366 (420)
T 3vl1_A 316 AQWDLRSPECPVGEFLIN------EGTPINNVYFA---AGALFVSSGFDT----SIKLDIISDP 366 (420)
T ss_dssp EEEETTCTTSCSEEEEES------TTSCEEEEEEE---TTEEEEEETTTE----EEEEEEECCT
T ss_pred EEEEcCCCcCchhhhhcc------CCCCceEEEeC---CCCEEEEecCCc----cEEEEeccCC
Confidence 899987653 2222210 11123333333 355778888653 5788887663
No 65
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.42 E-value=0.67 Score=52.60 Aligned_cols=124 Identities=13% Similarity=0.067 Sum_probs=69.9
Q ss_pred EEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEeeccCC--CCCC---cceeEEEEECCEEEEEeecCCCCCccC
Q 007111 52 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGD--IPVA---RSGHTVVRASSVLILFGGEDGKRRKLN 124 (617)
Q Consensus 52 ~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~--~P~~---R~~~s~~~~~~~IYv~GG~~~~~~~~~ 124 (617)
-++.++.||+.... ..++.+|..+.+ |+.-..... .+.. ....+.++.++.||+... ..
T Consensus 73 P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-------dg 138 (677)
T 1kb0_A 73 PVVVDGIMYVSASW-------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------DG 138 (677)
T ss_dssp CEEETTEEEEECGG-------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------TS
T ss_pred CEEECCEEEEECCC-------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-------CC
Confidence 34579999998652 359999998875 876542110 0000 112244567888888631 25
Q ss_pred eEEEEECCCCc--EEEeecCCCCCC-CCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCc--EEEee
Q 007111 125 DLHMFDLKSLT--WLPLHCTGTGPS-PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIK 191 (617)
Q Consensus 125 ~v~~yD~~t~~--W~~l~~~g~~P~-~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~~ 191 (617)
.++.+|..+.+ |+.-... ..+. .....+-++.++. +|+..+......-..++.||..+++ |+...
T Consensus 139 ~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~~p~v~~~~-v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 208 (677)
T 1kb0_A 139 RLIALDAATGKEVWHQNTFE-GQKGSLTITGAPRVFKGK-VIIGNGGAEYGVRGYITAYDAETGERKWRWFS 208 (677)
T ss_dssp EEEEEETTTCCEEEEEETTT-TCCSSCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred EEEEEECCCCCEEeeecCCc-CcCcCcccccCcEEECCE-EEEEecccccCCCCEEEEEECCCCcEEEEecc
Confidence 69999998875 8864210 1111 1111223344555 6554332222234579999998765 87654
No 66
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.17 Score=51.87 Aligned_cols=145 Identities=10% Similarity=0.038 Sum_probs=75.9
Q ss_pred CEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCc
Q 007111 57 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLT 135 (617)
Q Consensus 57 ~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~ 135 (617)
+..+++|+.+ ..+.+||+.+..-...- ...... -.+++.. ++.+++.|+.++ .+.+||..+..
T Consensus 217 ~~~~~~~~~~------g~i~~~d~~~~~~~~~~---~~~~~~-i~~~~~~~~~~~l~~~~~d~------~i~i~d~~~~~ 280 (425)
T 1r5m_A 217 DDKFVIPGPK------GAIFVYQITEKTPTGKL---IGHHGP-ISVLEFNDTNKLLLSASDDG------TLRIWHGGNGN 280 (425)
T ss_dssp TTEEEEECGG------GCEEEEETTCSSCSEEE---CCCSSC-EEEEEEETTTTEEEEEETTS------CEEEECSSSBS
T ss_pred CCEEEEEcCC------CeEEEEEcCCCceeeee---ccCCCc-eEEEEECCCCCEEEEEcCCC------EEEEEECCCCc
Confidence 3446666652 25889998876432221 111111 1222222 456677776543 47888887654
Q ss_pred EEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEE
Q 007111 136 WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYI 214 (617)
Q Consensus 136 W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI 214 (617)
....- . .....-.+++...+. +++.|+.++ .+..||+.+..-...... ....-.+++.. ++.+++
T Consensus 281 ~~~~~---~-~~~~~i~~~~~~~~~-~l~~~~~d~-----~i~i~d~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~ 346 (425)
T 1r5m_A 281 SQNCF---Y-GHSQSIVSASWVGDD-KVISCSMDG-----SVRLWSLKQNTLLALSIV----DGVPIFAGRISQDGQKYA 346 (425)
T ss_dssp CSEEE---C-CCSSCEEEEEEETTT-EEEEEETTS-----EEEEEETTTTEEEEEEEC----TTCCEEEEEECTTSSEEE
T ss_pred cceEe---c-CCCccEEEEEECCCC-EEEEEeCCC-----cEEEEECCCCcEeEeccc----CCccEEEEEEcCCCCEEE
Confidence 32221 0 111122344455566 677777653 599999987765443321 11112233333 566777
Q ss_pred EecCCCCCccceEEEEECCCCc
Q 007111 215 AGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 215 ~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
+|+..+ .+.+||+.+..
T Consensus 347 ~~~~dg-----~i~i~~~~~~~ 363 (425)
T 1r5m_A 347 VAFMDG-----QVNVYDLKKLN 363 (425)
T ss_dssp EEETTS-----CEEEEECHHHH
T ss_pred EEECCC-----eEEEEECCCCc
Confidence 776543 47888886554
No 67
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.57 Score=47.79 Aligned_cols=191 Identities=8% Similarity=-0.032 Sum_probs=94.6
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCC-----------CcceeEEEEECCEEEEEeecCCCCCccC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPV-----------ARSGHTVVRASSVLILFGGEDGKRRKLN 124 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~-----------~R~~~s~~~~~~~IYv~GG~~~~~~~~~ 124 (617)
++..++.|+.+ ..+..||+.+......-.....+. ...-.+++...+..++.|+.+ .
T Consensus 160 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g 227 (425)
T 1r5m_A 160 DGTHIISMDVE------NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK------G 227 (425)
T ss_dssp TSSEEEEEETT------CCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGG------G
T ss_pred CCCEEEEEecC------CeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC------C
Confidence 45556666642 248888988776443321111010 000222223333446666654 3
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcce
Q 007111 125 DLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGC 203 (617)
Q Consensus 125 ~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~h 203 (617)
.+.+||+.+..-...- ... ...-.+++.. ++. +++.|+.++ .+..||+.+........ .....-.
T Consensus 228 ~i~~~d~~~~~~~~~~---~~~-~~~i~~~~~~~~~~-~l~~~~~d~-----~i~i~d~~~~~~~~~~~----~~~~~i~ 293 (425)
T 1r5m_A 228 AIFVYQITEKTPTGKL---IGH-HGPISVLEFNDTNK-LLLSASDDG-----TLRIWHGGNGNSQNCFY----GHSQSIV 293 (425)
T ss_dssp CEEEEETTCSSCSEEE---CCC-SSCEEEEEEETTTT-EEEEEETTS-----CEEEECSSSBSCSEEEC----CCSSCEE
T ss_pred eEEEEEcCCCceeeee---ccC-CCceEEEEECCCCC-EEEEEcCCC-----EEEEEECCCCccceEec----CCCccEE
Confidence 5899999876432221 001 1111233333 455 677777654 38899987654332221 1112223
Q ss_pred EEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEE
Q 007111 204 CGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVE 282 (617)
Q Consensus 204 a~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~ 282 (617)
+++.. ++ +++.|+.. ..+.+||+.+..-...... .......+.+.. ++.++++|+.++ .|.
T Consensus 294 ~~~~~~~~-~l~~~~~d-----~~i~i~d~~~~~~~~~~~~------~~~~i~~~~~s~--~~~~l~~~~~dg----~i~ 355 (425)
T 1r5m_A 294 SASWVGDD-KVISCSMD-----GSVRLWSLKQNTLLALSIV------DGVPIFAGRISQ--DGQKYAVAFMDG----QVN 355 (425)
T ss_dssp EEEEETTT-EEEEEETT-----SEEEEEETTTTEEEEEEEC------TTCCEEEEEECT--TSSEEEEEETTS----CEE
T ss_pred EEEECCCC-EEEEEeCC-----CcEEEEECCCCcEeEeccc------CCccEEEEEEcC--CCCEEEEEECCC----eEE
Confidence 44444 44 66666654 3588999987654333211 111233333432 244667777653 588
Q ss_pred EEECCCCc
Q 007111 283 VLSIEKNE 290 (617)
Q Consensus 283 vyd~~~~~ 290 (617)
+||+.+..
T Consensus 356 i~~~~~~~ 363 (425)
T 1r5m_A 356 VYDLKKLN 363 (425)
T ss_dssp EEECHHHH
T ss_pred EEECCCCc
Confidence 88886543
No 68
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.38 E-value=1 Score=45.59 Aligned_cols=193 Identities=13% Similarity=0.059 Sum_probs=98.0
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCc--EEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
++.+++.||.+ ..+.+||+.+.. ....... ..............++. ++.|+.++ .+.+||+.+
T Consensus 108 ~~~~l~s~~~d------~~v~iw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~-l~s~s~d~------~i~~wd~~~ 173 (340)
T 1got_B 108 SGNYVACGGLD------NICSIYNLKTREGNVRVSREL-AGHTGYLSCCRFLDDNQ-IVTSSGDT------TCALWDIET 173 (340)
T ss_dssp TSSEEEEEETT------CEEEEEETTTCSBSCEEEEEE-ECCSSCEEEEEEEETTE-EEEEETTS------CEEEEETTT
T ss_pred CCCEEEEEeCC------CeEEEEECccCCCcceeEEEe-cCCCccEEEEEECCCCc-EEEEECCC------cEEEEECCC
Confidence 55677777763 257888877643 1111100 00111111111223455 55555433 488999988
Q ss_pred CcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEE
Q 007111 134 LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKW 212 (617)
Q Consensus 134 ~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~I 212 (617)
..-...- .+. ...-.+++...+..+++.|+.++. +..||+.+......-.. ....-.+++.. ++.+
T Consensus 174 ~~~~~~~-~~h---~~~v~~~~~~~~~~~l~sg~~d~~-----v~~wd~~~~~~~~~~~~----h~~~v~~v~~~p~~~~ 240 (340)
T 1got_B 174 GQQTTTF-TGH---TGDVMSLSLAPDTRLFVSGACDAS-----AKLWDVREGMCRQTFTG----HESDINAICFFPNGNA 240 (340)
T ss_dssp TEEEEEE-CCC---SSCEEEEEECTTSSEEEEEETTSC-----EEEEETTTCSEEEEECC----CSSCEEEEEECTTSSE
T ss_pred CcEEEEE-cCC---CCceEEEEECCCCCEEEEEeCCCc-----EEEEECCCCeeEEEEcC----CcCCEEEEEEcCCCCE
Confidence 7654331 111 111123333333337888887754 89999987765433221 11112233333 5677
Q ss_pred EEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 213 YIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 213 yI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
++.|+..+ .+.+||+.+..-.... .. .........+.+.. ++.+++.|+.++ .|.+||..+.+
T Consensus 241 l~s~s~d~-----~v~iwd~~~~~~~~~~--~~--~~~~~~v~~~~~s~--~g~~l~~g~~d~----~i~vwd~~~~~ 303 (340)
T 1got_B 241 FATGSDDA-----TCRLFDLRADQELMTY--SH--DNIICGITSVSFSK--SGRLLLAGYDDF----NCNVWDALKAD 303 (340)
T ss_dssp EEEEETTS-----CEEEEETTTTEEEEEE--CC--TTCCSCEEEEEECT--TSSEEEEEETTS----EEEEEETTTCC
T ss_pred EEEEcCCC-----cEEEEECCCCcEEEEE--cc--CCcccceEEEEECC--CCCEEEEECCCC----eEEEEEcccCc
Confidence 77777653 4889998876533221 10 11112334444443 345777777653 68889986644
No 69
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=96.30 E-value=0.14 Score=52.33 Aligned_cols=116 Identities=13% Similarity=0.017 Sum_probs=57.5
Q ss_pred CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCC--C-CCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEEC
Q 007111 107 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGT--G-PSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDF 182 (617)
Q Consensus 107 ~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~--~-P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~ 182 (617)
++ +++.|+.+ ..+.+||+.+.+....-. +. . +....-.+++.. ++. +++.|+.++ ....+.+||+
T Consensus 197 ~~-~l~~~~~d------g~i~i~d~~~~~~~~~~~-~~~~h~~~~~~i~~i~~~~~~~-~l~~~~~d~--~~g~i~i~d~ 265 (397)
T 1sq9_A 197 RG-LIATGFNN------GTVQISELSTLRPLYNFE-SQHSMINNSNSIRSVKFSPQGS-LLAIAHDSN--SFGCITLYET 265 (397)
T ss_dssp TS-EEEEECTT------SEEEEEETTTTEEEEEEE-CCC---CCCCCEEEEEECSSTT-EEEEEEEET--TEEEEEEEET
T ss_pred Cc-eEEEEeCC------CcEEEEECCCCceeEEEe-ccccccccCCccceEEECCCCC-EEEEEecCC--CCceEEEEEC
Confidence 45 66666543 358999998876443211 10 0 001111222333 455 666766541 0135999999
Q ss_pred CCCcEEEeecCCCCC---------CCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEE
Q 007111 183 ETMIWTRIKIRGFHP---------SPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWS 238 (617)
Q Consensus 183 ~t~~W~~~~~~g~~P---------~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~ 238 (617)
.+..-......+..+ ....-.+++.. ++.+++.|+.. ..+.+||+.+..-.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~ 326 (397)
T 1sq9_A 266 EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD-----GKLRFWDVKTKERI 326 (397)
T ss_dssp TTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT-----SEEEEEETTTTEEE
T ss_pred CCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC-----CeEEEEEcCCCcee
Confidence 876543322210000 11111233333 56667777644 35889999876543
No 70
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=96.27 E-value=0.54 Score=47.90 Aligned_cols=204 Identities=7% Similarity=0.029 Sum_probs=97.2
Q ss_pred EEEEEcccCCCCCCceEEEEEECCCCc------EEEeeccCCCCC---CcceeEEEEE-----CCEE-EEEeecCCCCCc
Q 007111 58 KVLLVGGKTDSGSDRVSVWTFDTETEC------WSVVEAKGDIPV---ARSGHTVVRA-----SSVL-ILFGGEDGKRRK 122 (617)
Q Consensus 58 ~lyV~GG~~~~~~~~~~v~~yd~~t~~------W~~~~~~g~~P~---~R~~~s~~~~-----~~~I-Yv~GG~~~~~~~ 122 (617)
.+++.|+.+. .+.+||+.+.. +..+. ..+. ...-.+++.. ++.+ ++.|+.++
T Consensus 82 ~~l~s~~~dg------~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg---- 148 (397)
T 1sq9_A 82 CLVATTSFSG------DLLFYRITREDETKKVIFEKLD---LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG---- 148 (397)
T ss_dssp EEEEEEETTS------CEEEEEEEECTTTCCEEEEEEC---CSCTTGGGSCEEEEEEECCC----CEEEEEEETTS----
T ss_pred cEEEEEcCCC------CEEEEEccCCcccccccceeec---ccccccCCCcEEEEEEeeccCCCCceEEEEEeCCC----
Confidence 7777777632 47777776665 66664 2211 1122223333 3555 77777643
Q ss_pred cCeEEEEECCC------Cc---EE---Eeec--CCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEE
Q 007111 123 LNDLHMFDLKS------LT---WL---PLHC--TGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWT 188 (617)
Q Consensus 123 ~~~v~~yD~~t------~~---W~---~l~~--~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~ 188 (617)
.+.+||..+ .. |. .+.. .........-.+++...+. +++.|+.++ .+..||+.+....
T Consensus 149 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg-----~i~i~d~~~~~~~ 220 (397)
T 1sq9_A 149 --TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNG-----TVQISELSTLRPL 220 (397)
T ss_dssp --CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTS-----EEEEEETTTTEEE
T ss_pred --cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCC-----cEEEEECCCCcee
Confidence 377777765 22 21 1110 0000111122244445555 777777654 4999999877654
Q ss_pred EeecCC-CC-CCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCC---C----CCCcceEEEE
Q 007111 189 RIKIRG-FH-PSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSS---V----TSNKGFTLVL 258 (617)
Q Consensus 189 ~~~~~g-~~-P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~---p----~~r~~~s~v~ 258 (617)
..-... .. +....-.+++.. ++.+++.|+..+ ....+.+||+.+..-...-..+... + ........+.
T Consensus 221 ~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~--~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 298 (397)
T 1sq9_A 221 YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN--SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 298 (397)
T ss_dssp EEEECCC---CCCCCEEEEEECSSTTEEEEEEEET--TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEE
T ss_pred EEEeccccccccCCccceEEECCCCCEEEEEecCC--CCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEE
Confidence 332210 00 001222233332 566666666431 1135889998776533321110000 0 0122233334
Q ss_pred EeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 259 VQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 259 v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
+.. ++.+++.|+.++ .|.+||+.+.+
T Consensus 299 ~~~--~~~~l~~~~~dg----~i~iwd~~~~~ 324 (397)
T 1sq9_A 299 FND--SGETLCSAGWDG----KLRFWDVKTKE 324 (397)
T ss_dssp ECS--SSSEEEEEETTS----EEEEEETTTTE
T ss_pred ECC--CCCEEEEEeCCC----eEEEEEcCCCc
Confidence 432 234666777543 68899987765
No 71
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=96.26 E-value=0.76 Score=47.98 Aligned_cols=225 Identities=15% Similarity=0.104 Sum_probs=110.3
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
+.|+++|..+++...+-. ...+...-.+++.. ++..++.|+.+. .+.+||+.+.+-....
T Consensus 125 ~tV~lWd~~tg~~~~~~~----------~~~~~~~V~sv~fspdg~~lasgs~Dg------~v~iWd~~~~~~~~~~--- 185 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQ----------MEQPGEYISSVAWIKEGNYLAVGTSSA------EVQLWDVQQQKRLRNM--- 185 (420)
T ss_dssp TEEEEEETTTCCEEEEEE----------CCSTTCCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEE---
T ss_pred CEEEEEECCCCCEEEEEE----------ecCCCCcEEEEEECCCCCEEEEEECCC------eEEEEEcCCCcEEEEE---
Confidence 368999999988765433 11111111222222 567777777632 4888898887643332
Q ss_pred CCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCC
Q 007111 93 DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKS 171 (617)
Q Consensus 93 ~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~ 171 (617)
..... ...+...++.+++.|+.+. .+..+|............+. .. ........ ++. .++.|+.++
T Consensus 186 ~~h~~--~v~~~s~~~~~l~sgs~d~------~i~~~d~~~~~~~~~~~~~h--~~-~~~~~~~~~~g~-~l~s~~~D~- 252 (420)
T 4gga_A 186 TSHSA--RVGSLSWNSYILSSGSRSG------HIHHHDVRVAEHHVATLSGH--SQ-EVCGLRWAPDGR-HLASGGNDN- 252 (420)
T ss_dssp CCCSS--CEEEEEEETTEEEEEETTS------EEEEEETTSSSCEEEEEECC--SS-CEEEEEECTTSS-EEEEEETTS-
T ss_pred eCCCC--ceEEEeeCCCEEEEEeCCC------ceeEeeecccceeeEEeccc--cc-ceeeeeecCCCC-eeeeeeccc-
Confidence 11222 2234445677777777644 46777776544322111111 11 11122222 345 666777664
Q ss_pred CCCCeEEEEECCCCcE--EEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCC
Q 007111 172 KTLNDLYSLDFETMIW--TRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSS 247 (617)
Q Consensus 172 ~~~n~v~~yD~~t~~W--~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~ 247 (617)
.+.++|..++.- ..+.... .....-.+++.. +..+++.||.+.+ ..+.+||+.+.........
T Consensus 253 ----~v~i~~~~~~~~~~~~~~~~~--~~~~~V~~~~~~p~~~~~la~~~gs~D---~~I~iwd~~t~~~~~~~~~---- 319 (420)
T 4gga_A 253 ----LVNVWPSAPGEGGWVPLQTFT--QHQGAVKAVAWCPWQSNVLATGGGTSD---RHIRIWNVCSGACLSAVDA---- 319 (420)
T ss_dssp ----CEEEEESSCCSSCSCCSEEEC--CCSSCEEEEEECTTCTTEEEEEECTTT---CEEEEEETTTTEEEEEEEC----
T ss_pred ----cceEEeeccccccceeeeeec--ccCCceeeeeeCCCcccEEEEEeecCC---CEEEEEeCCccccceeecc----
Confidence 377888765431 1111110 011111222222 4445555443322 3588999988764443211
Q ss_pred CCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 248 VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 248 p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
........+. .+...+++.+|+. -+.|.+||..+.+
T Consensus 320 ---~~~v~~~~~~-~~~~~lv~~sg~~---d~~I~iwd~~~~~ 355 (420)
T 4gga_A 320 ---HSQVCSILWS-PHYKELISGHGFA---QNQLVIWKYPTMA 355 (420)
T ss_dssp ---SSCEEEEEEE-TTTTEEEEEECTT---TCCEEEEETTTCC
T ss_pred ---ccceeeeeec-CCCCeEEEEEecC---CCEEEEEECCCCc
Confidence 1122333333 3345666665643 2368899987654
No 72
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=96.21 E-value=0.32 Score=48.23 Aligned_cols=149 Identities=12% Similarity=0.055 Sum_probs=75.5
Q ss_pred EEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcE
Q 007111 109 VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIW 187 (617)
Q Consensus 109 ~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W 187 (617)
.+++.||.+. .+.+||..+.+....-. + ... .-.+++.. ++. +++.|+.++ .+..||+.+..-
T Consensus 186 ~~~~s~~~d~------~i~i~d~~~~~~~~~~~-~--h~~-~v~~~~~s~~~~-~l~s~s~Dg-----~i~iwd~~~~~~ 249 (340)
T 4aow_A 186 PIIVSCGWDK------LVKVWNLANCKLKTNHI-G--HTG-YLNTVTVSPDGS-LCASGGKDG-----QAMLWDLNEGKH 249 (340)
T ss_dssp CEEEEEETTS------CEEEEETTTTEEEEEEC-C--CSS-CEEEEEECTTSS-EEEEEETTC-----EEEEEETTTTEE
T ss_pred cEEEEEcCCC------EEEEEECCCCceeeEec-C--CCC-cEEEEEECCCCC-EEEEEeCCC-----eEEEEEeccCce
Confidence 5566666543 37889998876544321 1 111 11122333 345 778888764 488999987654
Q ss_pred EEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCC---CCCCcceEEEEEeecCC
Q 007111 188 TRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSS---VTSNKGFTLVLVQHKEK 264 (617)
Q Consensus 188 ~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~---p~~r~~~s~v~v~~~~~ 264 (617)
...... ...-.+++...+..++.|+.. ..+.+||+.+............. ........++.+.. +
T Consensus 250 ~~~~~~-----~~~v~~~~~~~~~~~~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--d 317 (340)
T 4aow_A 250 LYTLDG-----GDIINALCFSPNRYWLCAATG-----PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA--D 317 (340)
T ss_dssp EEEEEC-----SSCEEEEEECSSSSEEEEEET-----TEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT--T
T ss_pred eeeecC-----CceEEeeecCCCCceeeccCC-----CEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC--C
Confidence 433222 111223333344455566543 35788888776533221111000 01112233344432 2
Q ss_pred cEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 265 DFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 265 ~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
+.+++.||.++ .|.+||+.+.
T Consensus 318 g~~l~sgs~Dg----~v~iW~~~tG 338 (340)
T 4aow_A 318 GQTLFAGYTDN----LVRVWQVTIG 338 (340)
T ss_dssp SSEEEEEETTS----CEEEEEEEC-
T ss_pred CCEEEEEeCCC----EEEEEeCCCc
Confidence 44667788764 5788887764
No 73
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=96.20 E-value=0.94 Score=50.65 Aligned_cols=195 Identities=11% Similarity=0.055 Sum_probs=97.8
Q ss_pred ceEEEEEECCCCcEEEeeccCCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCC-cEEEeecCCCCCCCC
Q 007111 72 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL-TWLPLHCTGTGPSPR 149 (617)
Q Consensus 72 ~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~-~W~~l~~~g~~P~~R 149 (617)
...++++|+.+.....+... ......-..++. -+++.+++++.+... ....++++|+.+. .+..+..... +...
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~-~~~~v~~~d~~~g~~~~~~~~~~~-~~~~ 309 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTG--EPKEKFLTNLSWSPDENILYVAEVNRAQ-NECKVNAYDAETGRFVRTLFVETD-KHYV 309 (706)
T ss_dssp EEEEEEEETTTTEEEECCCC--SCTTCEEEEEEECTTSSEEEEEEECTTS-CEEEEEEEETTTCCEEEEEEEEEC-SSCC
T ss_pred eeEEEEEECCCCceEeeccC--CCCceeEeeEEEECCCCEEEEEEeCCCC-CeeEEEEEECCCCceeeEEEEccC-CCeE
Confidence 35799999998876555410 011111122222 245544444443321 2468999999998 6766531111 0000
Q ss_pred -cccEEEEE---CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE---CCEEEEEecCCCCC
Q 007111 150 -SNHVAALY---DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC---GTKWYIAGGGSRKK 222 (617)
Q Consensus 150 -~~h~a~~~---~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~---~~~IyI~GG~s~~~ 222 (617)
.....+.. +++ +++.+..++ ...+|.+|........+... ... ......+ ++.+|+.+... ..
T Consensus 310 ~~~~~~~~sp~~dg~-~l~~~~~~g---~~~l~~~~~~~~~~~~l~~~---~~~--v~~~~~~spdg~~l~~~~~~~-~~ 379 (706)
T 2z3z_A 310 EPLHPLTFLPGSNNQ-FIWQSRRDG---WNHLYLYDTTGRLIRQVTKG---EWE--VTNFAGFDPKGTRLYFESTEA-SP 379 (706)
T ss_dssp CCCSCCEECTTCSSE-EEEEECTTS---SCEEEEEETTSCEEEECCCS---SSC--EEEEEEECTTSSEEEEEESSS-CT
T ss_pred CccCCceeecCCCCE-EEEEEccCC---ccEEEEEECCCCEEEecCCC---CeE--EEeeeEEcCCCCEEEEEecCC-CC
Confidence 00122333 455 555554443 35689999777766665331 111 1121233 34566665432 22
Q ss_pred ccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 223 RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 223 ~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
....+|.+|+.+.....+.. ..+...+.+..++ . .+++...+......++++|+.+.+
T Consensus 380 ~~~~l~~~d~~~~~~~~l~~--------~~~~~~~~~spdg-~-~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 380 LERHFYCIDIKGGKTKDLTP--------ESGMHRTQLSPDG-S-AIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp TCBEEEEEETTCCCCEESCC--------SSSEEEEEECTTS-S-EEEEEEECSSCSCEEEEEESSSCE
T ss_pred ceEEEEEEEcCCCCceeccC--------CCceEEEEECCCC-C-EEEEEecCCCCCcEEEEEECCCCe
Confidence 23578999998877655531 1123334444333 2 344443333334578888876654
No 74
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.17 E-value=0.47 Score=54.53 Aligned_cols=226 Identities=10% Similarity=0.050 Sum_probs=120.6
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..+++||+.+.++....... + ..+...-.+++.. ++.||+-.. ..+++||+.+++|.......
T Consensus 427 ~Gl~~~d~~~~~~~~~~~~~---~-----~l~~~~v~~i~~d~~g~lwigt~--------~Gl~~~~~~~~~~~~~~~~~ 490 (795)
T 4a2l_A 427 GGLSILHRNSGQVENFNQRN---S-----QLVNENVYAILPDGEGNLWLGTL--------SALVRFNPEQRSFTTIEKEK 490 (795)
T ss_dssp TEEEEEETTTCCEEEECTTT---S-----CCSCSCEEEEEECSSSCEEEEES--------SCEEEEETTTTEEEECCBCT
T ss_pred CceeEEeCCCCcEEEeecCC---C-----CcCCCeeEEEEECCCCCEEEEec--------CceeEEeCCCCeEEEccccc
Confidence 35888999888887765310 0 1122222344443 466776532 13899999999998875321
Q ss_pred ---CCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEE-E-CCcEEEEEc
Q 007111 93 ---DIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL-Y-DDKNLLIFG 166 (617)
Q Consensus 93 ---~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~-~-~~~~LyV~G 166 (617)
.++.... .+++.. ++.||+... .-+++||+.+..+ .+......+........++ . .+..|++..
T Consensus 491 ~~~~~~~~~i-~~i~~d~~g~lWigt~--------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT 560 (795)
T 4a2l_A 491 DGTPVVSKQI-TTLFRDSHKRLWIGGE--------EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGT 560 (795)
T ss_dssp TCCBCCCCCE-EEEEECTTCCEEEEES--------SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEE
T ss_pred cccccCCceE-EEEEECCCCCEEEEeC--------CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEe
Confidence 1111111 222222 467777432 2389999999888 5421001010111122222 2 233366643
Q ss_pred cCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCC
Q 007111 167 GSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPS 245 (617)
Q Consensus 167 G~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~ 245 (617)
. . .+++||+.++++..+....-.|... ..+++.. ++.+|+.+. .-+.+||+.+..+........
T Consensus 561 ~-~------Gl~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lWi~t~-------~Gl~~~~~~~~~~~~~~~~dG 625 (795)
T 4a2l_A 561 R-E------GFYCFNEKDKQIKRYNTTNGLPNNV-VYGILEDSFGRLWLSTN-------RGISCFNPETEKFRNFTESDG 625 (795)
T ss_dssp S-S------CEEEEETTTTEEEEECGGGTCSCSC-EEEEEECTTSCEEEEET-------TEEEEEETTTTEEEEECGGGT
T ss_pred C-C------CceeECCCCCcEEEeCCCCCCchhh-eEEEEECCCCCEEEEcC-------CceEEEcCCCCcEEEcCCcCC
Confidence 2 2 2999999999998875432233322 2334433 567887763 248899999998887653221
Q ss_pred CCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 246 SSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 246 ~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
.+.......++... .++.|| |||.+ -+.+|++..-
T Consensus 626 -l~~~~f~~~~~~~~--~~G~l~-~g~~~-----Gl~~~~p~~~ 660 (795)
T 4a2l_A 626 -LQSNQFNTASYCRT--SVGQMY-FGGIN-----GITTFRPELL 660 (795)
T ss_dssp -CSCSCEEEEEEEEC--TTSCEE-EEETT-----EEEEECGGGC
T ss_pred -CccccCccCceeEC--CCCeEE-EecCC-----ceEEEcHHHc
Confidence 12222222333333 234454 67654 4788887653
No 75
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=96.17 E-value=0.57 Score=49.04 Aligned_cols=187 Identities=11% Similarity=0.078 Sum_probs=93.1
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
++.+++.||.+. .+.+||+.+..-... +........++.+ ++.+++.||.++ .+.+||+.+
T Consensus 161 ~~~~l~sgs~D~------~i~iwd~~~~~~~~~-----~~~h~~~V~~v~~~p~~~~l~s~s~D~------~i~~wd~~~ 223 (410)
T 1vyh_C 161 SGKLLASCSADM------TIKLWDFQGFECIRT-----MHGHDHNVSSVSIMPNGDHIVSASRDK------TIKMWEVQT 223 (410)
T ss_dssp TSSEEEEEETTS------CCCEEETTSSCEEEC-----CCCCSSCEEEEEECSSSSEEEEEETTS------EEEEEETTT
T ss_pred CCCEEEEEeCCC------eEEEEeCCCCceeEE-----EcCCCCCEEEEEEeCCCCEEEEEeCCC------eEEEEECCC
Confidence 466777777632 366677766543221 1111122222232 456677777543 588999988
Q ss_pred CcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE----
Q 007111 134 LTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC---- 208 (617)
Q Consensus 134 ~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~---- 208 (617)
......- .+. .. .-..+... ++. +++.|+.++. +..||+.+......-.. .. ..-.+++..
T Consensus 224 ~~~~~~~-~~h--~~-~v~~~~~~~~g~-~l~s~s~D~~-----v~vwd~~~~~~~~~~~~--h~--~~v~~~~~~~~~~ 289 (410)
T 1vyh_C 224 GYCVKTF-TGH--RE-WVRMVRPNQDGT-LIASCSNDQT-----VRVWVVATKECKAELRE--HR--HVVECISWAPESS 289 (410)
T ss_dssp CCEEEEE-ECC--SS-CEEEEEECTTSS-EEEEEETTSC-----EEEEETTTCCEEEEECC--CS--SCEEEEEECCSCG
T ss_pred CcEEEEE-eCC--Cc-cEEEEEECCCCC-EEEEEcCCCe-----EEEEECCCCceeeEecC--CC--ceEEEEEEcCccc
Confidence 7643321 011 11 11122222 345 7778887643 88899887765543211 00 001111111
Q ss_pred -----------------CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEc
Q 007111 209 -----------------GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFG 271 (617)
Q Consensus 209 -----------------~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~G 271 (617)
.+.+++.|+.. ..+.+||+.+..-..... . .......+.+.. ++.+++.|
T Consensus 290 ~~~~~~~~~~~~~~~~~~g~~l~sgs~D-----~~i~iwd~~~~~~~~~~~-~-----h~~~v~~v~~~~--~g~~l~s~ 356 (410)
T 1vyh_C 290 YSSISEATGSETKKSGKPGPFLLSGSRD-----KTIKMWDVSTGMCLMTLV-G-----HDNWVRGVLFHS--GGKFILSC 356 (410)
T ss_dssp GGGGGGCCSCC-------CCEEEEEETT-----SEEEEEETTTTEEEEEEE-C-----CSSCEEEEEECS--SSSCEEEE
T ss_pred ccchhhhccccccccCCCCCEEEEEeCC-----CeEEEEECCCCceEEEEE-C-----CCCcEEEEEEcC--CCCEEEEE
Confidence 24566666654 358899988764322110 0 111223334432 23456677
Q ss_pred CCCCCCCCeEEEEECCCCc
Q 007111 272 GIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 272 G~~~~~~~dV~vyd~~~~~ 290 (617)
|.++ .|.+||..+.+
T Consensus 357 s~D~----~i~vwd~~~~~ 371 (410)
T 1vyh_C 357 ADDK----TLRVWDYKNKR 371 (410)
T ss_dssp ETTT----EEEEECCTTSC
T ss_pred eCCC----eEEEEECCCCc
Confidence 7653 68888886654
No 76
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=96.15 E-value=0.62 Score=46.29 Aligned_cols=224 Identities=8% Similarity=-0.018 Sum_probs=110.1
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEE-E-CCEEEEEcccCCCCCCceEEEEEECCCCcE-EEeec
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-W-GKKVLLVGGKTDSGSDRVSVWTFDTETECW-SVVEA 90 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~-~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~ 90 (617)
+.+.+||+.+.+...... .+ .. ..+++. - +..+|+.+... ..+++||+.+... .....
T Consensus 20 ~~v~~~d~~~~~~~~~~~----------~~--~~-~~~~~~s~dg~~l~~~~~~~------~~i~~~d~~~~~~~~~~~~ 80 (331)
T 3u4y_A 20 RRISFFSTDTLEILNQIT----------LG--YD-FVDTAITSDCSNVVVTSDFC------QTLVQIETQLEPPKVVAIQ 80 (331)
T ss_dssp TEEEEEETTTCCEEEEEE----------CC--CC-EEEEEECSSSCEEEEEESTT------CEEEEEECSSSSCEEEEEE
T ss_pred CeEEEEeCcccceeeeEE----------cc--CC-cceEEEcCCCCEEEEEeCCC------CeEEEEECCCCceeEEecc
Confidence 479999999988765543 11 11 112222 2 34577776532 2799999988874 22221
Q ss_pred cCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCC
Q 007111 91 KGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSS 169 (617)
Q Consensus 91 ~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~ 169 (617)
.+ ..++.+.+....+..+| .+...+. ...+++||+.+.+....-..+. ..+.+++. +++++|+.+..+
T Consensus 81 ~~--~~~~~~~~~s~dg~~l~-~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~-----~~~~~~~spdg~~l~~~~~~~ 149 (331)
T 3u4y_A 81 EG--QSSMADVDITPDDQFAV-TVTGLNH---PFNMQSYSFLKNKFISTIPIPY-----DAVGIAISPNGNGLILIDRSS 149 (331)
T ss_dssp EC--SSCCCCEEECTTSSEEE-ECCCSSS---SCEEEEEETTTTEEEEEEECCT-----TEEEEEECTTSSCEEEEEETT
T ss_pred cC--CCCccceEECCCCCEEE-EecCCCC---cccEEEEECCCCCeEEEEECCC-----CccceEECCCCCEEEEEecCC
Confidence 11 11221111111234666 3322111 2379999999887654421111 12344444 344577765543
Q ss_pred CCCCCCe-EEEEECCCCc-EEEeecCCCCCCCCcceEEEEE-CC-EEEEEecCCCCCccceEEEEECCCCcE----EEee
Q 007111 170 KSKTLND-LYSLDFETMI-WTRIKIRGFHPSPRAGCCGVLC-GT-KWYIAGGGSRKKRHAETLIFDILKGEW----SVAI 241 (617)
Q Consensus 170 ~~~~~n~-v~~yD~~t~~-W~~~~~~g~~P~~R~~ha~v~~-~~-~IyI~GG~s~~~~~~~v~~yDl~~~~W----~~l~ 241 (617)
+. +.+|++..+. ....... ..+....-..++.. ++ .+|+.+... ..+.+||+.+.+. ..++
T Consensus 150 -----~~~i~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~~~~~-----~~v~v~d~~~~~~~~~~~~~~ 218 (331)
T 3u4y_A 150 -----ANTVRRFKIDADGVLFDTGQE-FISGGTRPFNITFTPDGNFAFVANLIG-----NSIGILETQNPENITLLNAVG 218 (331)
T ss_dssp -----TTEEEEEEECTTCCEEEEEEE-EECSSSSEEEEEECTTSSEEEEEETTT-----TEEEEEECSSTTSCEEEEEEE
T ss_pred -----CceEEEEEECCCCcEeecCCc-cccCCCCccceEECCCCCEEEEEeCCC-----CeEEEEECCCCcccceeeecc
Confidence 23 6677664322 1111000 00111212333333 44 577776433 4689999987664 2232
Q ss_pred cCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 242 TSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 242 ~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
. . .....+.+. .+...+|+..+. .+.|.++|+.+.+.
T Consensus 219 ~---~-----~~~~~~~~s-pdg~~l~v~~~~----~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 219 T---N-----NLPGTIVVS-RDGSTVYVLTES----TVDVFNFNQLSGTL 255 (331)
T ss_dssp C---S-----SCCCCEEEC-TTSSEEEEECSS----EEEEEEEETTTTEE
T ss_pred C---C-----CCCceEEEC-CCCCEEEEEEcC----CCEEEEEECCCCce
Confidence 1 1 111122333 233556665542 23688999987664
No 77
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=96.14 E-value=1.1 Score=43.51 Aligned_cols=190 Identities=10% Similarity=-0.002 Sum_probs=99.9
Q ss_pred eEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEE
Q 007111 50 HSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLH 127 (617)
Q Consensus 50 hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~ 127 (617)
++++.. ++++|+.+.. ...+++||+ +......... ........++.. ++.+|+... ....++
T Consensus 102 ~~i~~~~~g~l~v~~~~------~~~i~~~d~-~g~~~~~~~~---~~~~~~~~i~~~~~g~l~v~~~------~~~~i~ 165 (299)
T 2z2n_A 102 YGITEGPNGDIWFTEMN------GNRIGRITD-DGKIREYELP---NKGSYPSFITLGSDNALWFTEN------QNNAIG 165 (299)
T ss_dssp EEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEECS---STTCCEEEEEECTTSCEEEEET------TTTEEE
T ss_pred eeeEECCCCCEEEEecC------CceEEEECC-CCCEEEecCC---CCCCCCceEEEcCCCCEEEEeC------CCCEEE
Confidence 445444 5688887532 136899999 6666655421 112223344443 468887542 135689
Q ss_pred EEECCCCcEEEeecCCCCCCCCccc-EEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc-eEE
Q 007111 128 MFDLKSLTWLPLHCTGTGPSPRSNH-VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCG 205 (617)
Q Consensus 128 ~yD~~t~~W~~l~~~g~~P~~R~~h-~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~-ha~ 205 (617)
+||+ +.+...+.. +...... .++...+..+|+..... +.+++||+ ++.+..+... ..... .++
T Consensus 166 ~~~~-~g~~~~~~~----~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~-~g~~~~~~~~----~~~~~~~~i 230 (299)
T 2z2n_A 166 RITE-SGDITEFKI----PTPASGPVGITKGNDDALWFVEIIG-----NKIGRITT-SGEITEFKIP----TPNARPHAI 230 (299)
T ss_dssp EECT-TCCEEEEEC----SSTTCCEEEEEECTTSSEEEEETTT-----TEEEEECT-TCCEEEEECS----STTCCEEEE
T ss_pred EEcC-CCcEEEeeC----CCCCCcceeEEECCCCCEEEEccCC-----ceEEEECC-CCcEEEEECC----CCCCCceeE
Confidence 9999 777776531 1111122 33333333377765332 45999999 7777765332 11122 233
Q ss_pred EEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEE
Q 007111 206 VLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVL 284 (617)
Q Consensus 206 v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vy 284 (617)
+.. ++.+|+..... +.+++||+ ......... +. .......+.+ .++.||+.... +.+.+|
T Consensus 231 ~~~~~g~l~v~~~~~-----~~i~~~d~-~g~~~~~~~-~~----~~~~~~~i~~---~~g~l~v~~~~-----~~l~~~ 291 (299)
T 2z2n_A 231 TAGAGIDLWFTEWGA-----NKIGRLTS-NNIIEEYPI-QI----KSAEPHGICF---DGETIWFAMEC-----DKIGKL 291 (299)
T ss_dssp EECSTTCEEEEETTT-----TEEEEEET-TTEEEEEEC-SS----SSCCEEEEEE---CSSCEEEEETT-----TEEEEE
T ss_pred EECCCCCEEEeccCC-----ceEEEECC-CCceEEEeC-CC----CCCccceEEe---cCCCEEEEecC-----CcEEEE
Confidence 333 56788875322 35889998 445544431 11 1112222333 24567765431 368888
Q ss_pred ECCCC
Q 007111 285 SIEKN 289 (617)
Q Consensus 285 d~~~~ 289 (617)
++.+.
T Consensus 292 ~~~~~ 296 (299)
T 2z2n_A 292 TLIKD 296 (299)
T ss_dssp EEC--
T ss_pred EcCcc
Confidence 88764
No 78
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=96.13 E-value=1.2 Score=44.17 Aligned_cols=187 Identities=9% Similarity=-0.006 Sum_probs=89.9
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 93 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~ 93 (617)
.+.+||+.+..-...-. .....-.+++.. ++..++.|+.+ ..+.+||+.+......-.
T Consensus 55 ~i~vwd~~~~~~~~~~~------------~h~~~v~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~--- 113 (369)
T 3zwl_B 55 SASVWYSLNGERLGTLD------------GHTGTIWSIDVDCFTKYCVTGSAD------YSIKLWDVSNGQCVATWK--- 113 (369)
T ss_dssp CEEEEETTTCCEEEEEC------------CCSSCEEEEEECTTSSEEEEEETT------TEEEEEETTTCCEEEEEE---
T ss_pred EEEEEeCCCchhhhhhh------------hcCCcEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCcEEEEee---
Confidence 58889987766433221 011111223332 45666677653 268899998876544331
Q ss_pred CCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCCc----EEEeecCC--CC--CCCCcccEEEEE--CCcEE
Q 007111 94 IPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLT----WLPLHCTG--TG--PSPRSNHVAALY--DDKNL 162 (617)
Q Consensus 94 ~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~----W~~l~~~g--~~--P~~R~~h~a~~~--~~~~L 162 (617)
.+. .-.+++. .++.+++.++.+.. .....+.+||+.+.. +....... .+ ........++.+ ++. +
T Consensus 114 ~~~--~v~~~~~~~~~~~l~~~~~~~~-~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 189 (369)
T 3zwl_B 114 SPV--PVKRVEFSPCGNYFLAILDNVM-KNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK-Y 189 (369)
T ss_dssp CSS--CEEEEEECTTSSEEEEEECCBT-TBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC-E
T ss_pred cCC--CeEEEEEccCCCEEEEecCCcc-CCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCC-E
Confidence 111 1112222 24555566554421 123567788776542 22221000 00 000002222222 344 6
Q ss_pred EEEccCCCCCCCCeEEEEECCC-CcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEe
Q 007111 163 LIFGGSSKSKTLNDLYSLDFET-MIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 240 (617)
Q Consensus 163 yV~GG~~~~~~~n~v~~yD~~t-~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l 240 (617)
+++|+.++ .+..||+.+ ......... ....-.+++.. ++.+++.|+.. ..+.+||+.+......
T Consensus 190 l~~~~~dg-----~i~i~d~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~ 255 (369)
T 3zwl_B 190 IIAGHKDG-----KISKYDVSNNYEYVDSIDL----HEKSISDMQFSPDLTYFITSSRD-----TNSFLVDVSTLQVLKK 255 (369)
T ss_dssp EEEEETTS-----EEEEEETTTTTEEEEEEEC----CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEE
T ss_pred EEEEcCCC-----EEEEEECCCCcEeEEEEec----CCCceeEEEECCCCCEEEEecCC-----ceEEEEECCCCceeee
Confidence 66776653 599999987 333322221 11112233333 56666776644 3588999987665443
No 79
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=96.10 E-value=1.3 Score=49.59 Aligned_cols=153 Identities=8% Similarity=-0.005 Sum_probs=80.0
Q ss_pred cCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCC-cEEEeecCCCCCCCC
Q 007111 123 LNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETM-IWTRIKIRGFHPSPR 200 (617)
Q Consensus 123 ~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~-~W~~~~~~g~~P~~R 200 (617)
...++++|+.+.+...+.. + .....+-...+.. +++ .++++..+.......++.+|+.++ .+..+..... +...
T Consensus 234 ~~~l~~~d~~~~~~~~~~~-~-~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~-~~~~ 309 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQT-G-EPKEKFLTNLSWSPDEN-ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD-KHYV 309 (706)
T ss_dssp EEEEEEEETTTTEEEECCC-C-SCTTCEEEEEEECTTSS-EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC-SSCC
T ss_pred eeEEEEEECCCCceEeecc-C-CCCceeEeeEEEECCCC-EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC-CCeE
Confidence 3679999999888765531 1 1111121222333 455 444444443333457999999998 7766543111 1000
Q ss_pred -cceEEEE-E--CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEE-EEEeecCCcEEEEEcCCCC
Q 007111 201 -AGCCGVL-C--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTL-VLVQHKEKDFLVAFGGIKK 275 (617)
Q Consensus 201 -~~ha~v~-~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~-v~v~~~~~~~L~I~GG~~~ 275 (617)
....++. - ++++++.+...+ ...+|.+|.....+..+.. ....... +.+. .+...|++.+..++
T Consensus 310 ~~~~~~~~sp~~dg~~l~~~~~~g---~~~l~~~~~~~~~~~~l~~-------~~~~v~~~~~~s-pdg~~l~~~~~~~~ 378 (706)
T 2z3z_A 310 EPLHPLTFLPGSNNQFIWQSRRDG---WNHLYLYDTTGRLIRQVTK-------GEWEVTNFAGFD-PKGTRLYFESTEAS 378 (706)
T ss_dssp CCCSCCEECTTCSSEEEEEECTTS---SCEEEEEETTSCEEEECCC-------SSSCEEEEEEEC-TTSSEEEEEESSSC
T ss_pred CccCCceeecCCCCEEEEEEccCC---ccEEEEEECCCCEEEecCC-------CCeEEEeeeEEc-CCCCEEEEEecCCC
Confidence 0011222 2 667655554332 3678999977777766531 1112222 3343 23456666655433
Q ss_pred CCCCeEEEEECCCCc
Q 007111 276 EPSNQVEVLSIEKNE 290 (617)
Q Consensus 276 ~~~~dV~vyd~~~~~ 290 (617)
.....||.+|..+.+
T Consensus 379 ~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 379 PLERHFYCIDIKGGK 393 (706)
T ss_dssp TTCBEEEEEETTCCC
T ss_pred CceEEEEEEEcCCCC
Confidence 234588999987765
No 80
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.10 E-value=0.72 Score=52.94 Aligned_cols=229 Identities=10% Similarity=-0.023 Sum_probs=118.1
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCE-EEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKK-VLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~-lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
.+.+||+.+..+........ .+. ...+...-.+++.. ++. ||| |... ..+++||+.++.+.......
T Consensus 378 Gl~~~~~~~~~~~~~~~~~~-~~~---~~l~~~~v~~i~~d~~g~~lWi-gt~~------~Gl~~~d~~~~~~~~~~~~~ 446 (795)
T 4a2l_A 378 GLNLYNPITQRFTSYTLQED-ESA---RGIGSNNIKAVYVDEKKSLVYI-GTHA------GGLSILHRNSGQVENFNQRN 446 (795)
T ss_dssp CEEEECTTTCCEEEECCC----------CCSCSCEEEEEEETTTTEEEE-EETT------TEEEEEETTTCCEEEECTTT
T ss_pred CeEEEcCCCCcEEEEecCCC-Ccc---cCCCCccEEEEEEcCCCCEEEE-EeCc------CceeEEeCCCCcEEEeecCC
Confidence 47888888888776653100 000 01122223455554 456 665 3321 25899999999888775321
Q ss_pred -CCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCC---CCCCCCcccEEEEECCcEEEEEcc
Q 007111 93 -DIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTG---TGPSPRSNHVAALYDDKNLLIFGG 167 (617)
Q Consensus 93 -~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g---~~P~~R~~h~a~~~~~~~LyV~GG 167 (617)
.++.. .-.+++.. ++.||+-. . +.+++||+.+.+|+.+.... .++... -.+.+.-.+..|+|...
T Consensus 447 ~~l~~~-~v~~i~~d~~g~lwigt-~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~d~~g~lWigt~ 516 (795)
T 4a2l_A 447 SQLVNE-NVYAILPDGEGNLWLGT-L-------SALVRFNPEQRSFTTIEKEKDGTPVVSKQ-ITTLFRDSHKRLWIGGE 516 (795)
T ss_dssp SCCSCS-CEEEEEECSSSCEEEEE-S-------SCEEEEETTTTEEEECCBCTTCCBCCCCC-EEEEEECTTCCEEEEES
T ss_pred CCcCCC-eeEEEEECCCCCEEEEe-c-------CceeEEeCCCCeEEEccccccccccCCce-EEEEEECCCCCEEEEeC
Confidence 11211 11222222 46777643 1 24899999999998874220 111111 11222222333666433
Q ss_pred CCCCCCCCeEEEEECCCCcEEEeecC---CCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecC
Q 007111 168 SSKSKTLNDLYSLDFETMIWTRIKIR---GFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITS 243 (617)
Q Consensus 168 ~~~~~~~n~v~~yD~~t~~W~~~~~~---g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~ 243 (617)
. .+++||+.++.+ .+... ...+. ..-.+++.. ++.+||.... -+++||+.+..+......
T Consensus 517 -~------Gl~~~~~~~~~~-~~~~~~~~~~l~~-~~i~~i~~d~~g~lWigT~~-------Gl~~~d~~~~~~~~~~~~ 580 (795)
T 4a2l_A 517 -E------GLSVFKQEGLDI-QKASILPVSNVTK-LFTNCIYEASNGIIWVGTRE-------GFYCFNEKDKQIKRYNTT 580 (795)
T ss_dssp -S------CEEEEEEETTEE-EECCCSCSCGGGG-SCEEEEEECTTSCEEEEESS-------CEEEEETTTTEEEEECGG
T ss_pred -C------ceEEEeCCCCeE-EEecCCCCCCCCC-CeeEEEEECCCCCEEEEeCC-------CceeECCCCCcEEEeCCC
Confidence 2 399999999888 44321 00111 111233332 5677775421 288999999988876432
Q ss_pred CCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 244 PSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 244 ~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
. ..| .. ...++... .++.|++.+. +-+.+||+.+.++
T Consensus 581 ~-gl~-~~-~i~~i~~d--~~g~lWi~t~------~Gl~~~~~~~~~~ 617 (795)
T 4a2l_A 581 N-GLP-NN-VVYGILED--SFGRLWLSTN------RGISCFNPETEKF 617 (795)
T ss_dssp G-TCS-CS-CEEEEEEC--TTSCEEEEET------TEEEEEETTTTEE
T ss_pred C-CCc-hh-heEEEEEC--CCCCEEEEcC------CceEEEcCCCCcE
Confidence 1 111 11 12222222 3466776553 2577888877664
No 81
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.14 Score=58.81 Aligned_cols=195 Identities=11% Similarity=0.100 Sum_probs=102.1
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--C--CEEEEEeecCCCCCccCeEEEEEC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--S--SVLILFGGEDGKRRKLNDLHMFDL 131 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~--~~IYv~GG~~~~~~~~~~v~~yD~ 131 (617)
++..++.||.+ ..+.+||..+.++..+.. +........++.+ + +.+++.||.++ .+.+||+
T Consensus 20 dg~~latg~~d------g~I~vwd~~~~~~~~~~~---l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg------~I~vwd~ 84 (753)
T 3jro_A 20 YGKRLATCSSD------KTIKIFEVEGETHKLIDT---LTGHEGPVWRVDWAHPKFGTILASCSYDG------KVLIWKE 84 (753)
T ss_dssp SSCCEEEEETT------TEEEEEEEETTEEEEEEE---ECCCSSCEEEEEECCTTSCSEEEEEETTS------CEEEEEE
T ss_pred CCCeEEEEECC------CcEEEEecCCCCCcccee---ccCCcCceEEEEecCCCCCCEEEEEeCCC------eEEEEEC
Confidence 45666677653 257778877777766652 2222222223333 2 67778887654 3889999
Q ss_pred CCCcEEEeecCCCCCCCCcccEEEEE-C---CcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE
Q 007111 132 KSLTWLPLHCTGTGPSPRSNHVAALY-D---DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL 207 (617)
Q Consensus 132 ~t~~W~~l~~~g~~P~~R~~h~a~~~-~---~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~ 207 (617)
.+..|..+.. +......-.++.+ . +. ++++|+.++ .|..||+.+..-.........+. .-.+++.
T Consensus 85 ~~~~~~~~~~---~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg-----~I~vwdl~~~~~~~~~~~~~~~~--~v~~l~~ 153 (753)
T 3jro_A 85 ENGRWSQIAV---HAVHSASVNSVQWAPHEYGP-LLLVASSDG-----KVSVVEFKENGTTSPIIIDAHAI--GVNSASW 153 (753)
T ss_dssp ETTEEEEEEE---ECCCSSCEEEEEECCGGGCS-EEEEEETTS-----EEEEEECCSSSCCCCEEEECCSS--CEEEEEE
T ss_pred CCCccccccc---ccCCCCCeEEEEECCCCCCC-EEEEEeCCC-----cEEEEEeecCCCcceeEeecCCC--ceEEEEe
Confidence 9998876642 1111122223333 2 45 778888764 48899987652211111000111 1122222
Q ss_pred E--------------CCEEEEEecCCCCCccceEEEEECCCC--cEEEeecCCCCCCCCCcceEEEEEeecC-CcEEEEE
Q 007111 208 C--------------GTKWYIAGGGSRKKRHAETLIFDILKG--EWSVAITSPSSSVTSNKGFTLVLVQHKE-KDFLVAF 270 (617)
Q Consensus 208 ~--------------~~~IyI~GG~s~~~~~~~v~~yDl~~~--~W~~l~~~~~~~p~~r~~~s~v~v~~~~-~~~L~I~ 270 (617)
. ++.+++.|+..+ .+.+||+.+. .+........ ......++.+...+ .+.+++.
T Consensus 154 ~p~~~~~~~~~~~~~d~~~l~sgs~dg-----~I~iwd~~~~~~~~~~~~~~~~----h~~~V~~l~~sp~~~~~~~l~s 224 (753)
T 3jro_A 154 APATIEEDGEHNGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTLEG----HSDWVRDVAWSPTVLLRSYLAS 224 (753)
T ss_dssp CCCC---------CGGGCCEEEEETTS-----CEEEEEEETTTTEEEEEEEECC----CSSCEEEEEECCCCSSSEEEEE
T ss_pred cCcccccccccccCCCCCEEEEEECCC-----eEEEEeccCCcccceeeeeecC----CCCcEEEEEeccCCCCCCEEEE
Confidence 2 256777777653 3777776543 3444332111 11223333443221 0567788
Q ss_pred cCCCCCCCCeEEEEECCCC
Q 007111 271 GGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 271 GG~~~~~~~dV~vyd~~~~ 289 (617)
||.++ .|.+||+.+.
T Consensus 225 ~s~Dg----~I~iwd~~~~ 239 (753)
T 3jro_A 225 VSQDR----TCIIWTQDNE 239 (753)
T ss_dssp EESSS----CEEEEEESSS
T ss_pred EecCC----EEEEecCCCC
Confidence 88764 5788888765
No 82
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=96.07 E-value=1.2 Score=43.38 Aligned_cols=190 Identities=16% Similarity=0.111 Sum_probs=93.3
Q ss_pred EECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 54 SWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 54 ~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
.+++..++.|+.+ ..+..||.....+.... ...+.........++.+++.|+.++ .+.+||...
T Consensus 111 ~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d~------~i~i~d~~~ 174 (313)
T 3odt_A 111 SFQDGVVISGSWD------KTAKVWKEGSLVYNLQA----HNASVWDAKVVSFSENKFLTASADK------TIKLWQNDK 174 (313)
T ss_dssp EEETTEEEEEETT------SEEEEEETTEEEEEEEC----CSSCEEEEEEEETTTTEEEEEETTS------CEEEEETTE
T ss_pred EecCCEEEEEeCC------CCEEEEcCCcEEEeccc----CCCceeEEEEccCCCCEEEEEECCC------CEEEEecCc
Confidence 3355566666653 25777883222222221 1111111112222566677776544 378888332
Q ss_pred CcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEE
Q 007111 134 LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKW 212 (617)
Q Consensus 134 ~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~I 212 (617)
. -..+. .+....-.+++...+.. ++.|+.++ .+..||+.+..-...... ....-.+++.. ++ .
T Consensus 175 ~-~~~~~----~~~~~~i~~~~~~~~~~-~~~~~~dg-----~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~~~~-~ 238 (313)
T 3odt_A 175 V-IKTFS----GIHNDVVRHLAVVDDGH-FISCSNDG-----LIKLVDMHTGDVLRTYEG----HESFVYCIKLLPNG-D 238 (313)
T ss_dssp E-EEEEC----SSCSSCEEEEEEEETTE-EEEEETTS-----EEEEEETTTCCEEEEEEC----CSSCEEEEEECTTS-C
T ss_pred e-EEEEe----ccCcccEEEEEEcCCCe-EEEccCCC-----eEEEEECCchhhhhhhhc----CCceEEEEEEecCC-C
Confidence 1 22221 11122222344444553 66676654 499999987654433221 11112233333 44 4
Q ss_pred EEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCccc
Q 007111 213 YIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESS 292 (617)
Q Consensus 213 yI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W~ 292 (617)
++.||.. ..+.+||+.+.......... ......+.+... +. ++.|+.++ .|.+||+.+.++.
T Consensus 239 l~~~~~d-----g~v~iwd~~~~~~~~~~~~~------~~~i~~~~~~~~--~~-~~~~~~dg----~i~iw~~~~~~~~ 300 (313)
T 3odt_A 239 IVSCGED-----RTVRIWSKENGSLKQVITLP------AISIWSVDCMSN--GD-IIVGSSDN----LVRIFSQEKSRWA 300 (313)
T ss_dssp EEEEETT-----SEEEEECTTTCCEEEEEECS------SSCEEEEEECTT--SC-EEEEETTS----CEEEEESCGGGCC
T ss_pred EEEEecC-----CEEEEEECCCCceeEEEecc------CceEEEEEEccC--CC-EEEEeCCC----cEEEEeCCCCcee
Confidence 5566644 35889999887654433211 112333444333 23 45576653 6899999887764
Q ss_pred c
Q 007111 293 M 293 (617)
Q Consensus 293 ~ 293 (617)
.
T Consensus 301 ~ 301 (313)
T 3odt_A 301 S 301 (313)
T ss_dssp C
T ss_pred e
Confidence 3
No 83
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.06 E-value=0.36 Score=50.94 Aligned_cols=187 Identities=10% Similarity=-0.011 Sum_probs=100.4
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CC-EEEEEcccCCCCCCceEEEEEECCCCcEEEeecc
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GK-KVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 91 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~-~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 91 (617)
..++++|+.+.+...+... +.. ..+++.. ++ .|++.+..+. ...+|++|+.+.....+..
T Consensus 203 ~~i~~~d~~tg~~~~l~~~------------~~~-~~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~~l~~- 264 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVASF------------PRH-NGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTD- 264 (415)
T ss_dssp CEEEEEETTTCCEEEEECC------------SSC-EEEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEEECCC-
T ss_pred cEEEEEECCCCcEEEeecC------------CCc-ccCEEEcCCCCEEEEEEecCC----CceEEEEECCCCCEEeCcC-
Confidence 4789999998887665431 111 1222222 44 4554544311 2479999999988765541
Q ss_pred CCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCC
Q 007111 92 GDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSS 169 (617)
Q Consensus 92 g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~ 169 (617)
.+ . .....+. -+++.+++++.... ...+|.+|+.+..-..+.. ........+.. +++ .+++++..
T Consensus 265 --~~-~-~~~~~~~spdg~~l~~~s~~~g---~~~i~~~d~~~~~~~~l~~-----~~~~~~~~~~spdG~-~l~~~~~~ 331 (415)
T 2hqs_A 265 --GR-S-NNTEPTWFPDSQNLAFTSDQAG---RPQVYKVNINGGAPQRITW-----EGSQNQDADVSSDGK-FMVMVSSN 331 (415)
T ss_dssp --CS-S-CEEEEEECTTSSEEEEEECTTS---SCEEEEEETTSSCCEECCC-----SSSEEEEEEECTTSS-EEEEEEEC
T ss_pred --CC-C-cccceEECCCCCEEEEEECCCC---CcEEEEEECCCCCEEEEec-----CCCcccCeEECCCCC-EEEEEECc
Confidence 11 1 1112222 24554454443221 3579999998887555421 11222223332 455 44444433
Q ss_pred CCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEee
Q 007111 170 KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 241 (617)
Q Consensus 170 ~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~ 241 (617)
.. ...++++|+.++....+... . ...+.+.. +++.+++++.... ...+|++|+.......+.
T Consensus 332 ~g--~~~i~~~d~~~~~~~~l~~~-----~-~~~~~~~spdg~~l~~~s~~~~--~~~l~~~d~~g~~~~~l~ 394 (415)
T 2hqs_A 332 GG--QQHIAKQDLATGGVQVLSST-----F-LDETPSLAPNGTMVIYSSSQGM--GSVLNLVSTDGRFKARLP 394 (415)
T ss_dssp SS--CEEEEEEETTTCCEEECCCS-----S-SCEEEEECTTSSEEEEEEEETT--EEEEEEEETTSCCEEECC
T ss_pred CC--ceEEEEEECCCCCEEEecCC-----C-CcCCeEEcCCCCEEEEEEcCCC--ccEEEEEECCCCcEEEee
Confidence 21 34699999999888655432 1 22233333 5565555553321 246899999877776664
No 84
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=95.98 E-value=0.27 Score=50.52 Aligned_cols=189 Identities=11% Similarity=0.034 Sum_probs=94.6
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
+++.++.|+.+. .+.+||+.+......- ....... .+++.. ++.+++.||.++ .+.+||+.+
T Consensus 150 dg~~l~sgs~dg------~v~iwd~~~~~~~~~~---~~h~~~v-~~v~~s~~~~~~~~s~~~dg------~v~~wd~~~ 213 (357)
T 4g56_B 150 DGTQAVSGGKDF------SVKVWDLSQKAVLKSY---NAHSSEV-NCVAACPGKDTIFLSCGEDG------RILLWDTRK 213 (357)
T ss_dssp SSSEEEEEETTS------CEEEEETTTTEEEEEE---CCCSSCE-EEEEECTTCSSCEEEEETTS------CEEECCTTS
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEE---cCCCCCE-EEEEEccCCCceeeeeccCC------ceEEEECCC
Confidence 566777777632 4888898887643322 1111111 122222 235777777654 378888877
Q ss_pred CcEEEeecCCCCCCCCcccEEEEE--CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CC
Q 007111 134 LTWLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT 210 (617)
Q Consensus 134 ~~W~~l~~~g~~P~~R~~h~a~~~--~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~ 210 (617)
.+-.... ..........++.+ ++..+++.|+.++ .|..||+.+..-...... ....-.+++.. ++
T Consensus 214 ~~~~~~~---~~~~~~~~v~~v~~sp~~~~~la~g~~d~-----~i~~wd~~~~~~~~~~~~----~~~~v~~l~~sp~~ 281 (357)
T 4g56_B 214 PKPATRI---DFCASDTIPTSVTWHPEKDDTFACGDETG-----NVSLVNIKNPDSAQTSAV----HSQNITGLAYSYHS 281 (357)
T ss_dssp SSCBCBC---CCTTCCSCEEEEEECTTSTTEEEEEESSS-----CEEEEESSCGGGCEEECC----CSSCEEEEEECSSS
T ss_pred Cceeeee---eeccccccccchhhhhcccceEEEeeccc-----ceeEEECCCCcEeEEEec----cceeEEEEEEcCCC
Confidence 6533221 11111111223333 2233777887764 388999876542221111 11111233332 33
Q ss_pred -EEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 211 -KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 211 -~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
.+++.|+..+ .+.+||+.+.+..... . -......+.+... ++.+++.||.++ .|.+|++...
T Consensus 282 ~~~lasgs~D~-----~i~iwd~~~~~~~~~~--~-----H~~~V~~vafsP~-d~~~l~s~s~Dg----~v~iW~~~~~ 344 (357)
T 4g56_B 282 SPFLASISEDC-----TVAVLDADFSEVFRDL--S-----HRDFVTGVAWSPL-DHSKFTTVGWDH----KVLHHHLPSE 344 (357)
T ss_dssp SCCEEEEETTS-----CEEEECTTSCEEEEEC--C-----CSSCEEEEEECSS-STTEEEEEETTS----CEEEEECC--
T ss_pred CCEEEEEeCCC-----EEEEEECCCCcEeEEC--C-----CCCCEEEEEEeCC-CCCEEEEEcCCC----eEEEEECCCC
Confidence 5566666543 4888998877544321 1 1122334444322 244677888765 4788887543
No 85
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=95.96 E-value=0.27 Score=50.63 Aligned_cols=188 Identities=11% Similarity=0.043 Sum_probs=93.4
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE---CCEEEEEeecCCCCCccCeEEEEECC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA---SSVLILFGGEDGKRRKLNDLHMFDLK 132 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~---~~~IYv~GG~~~~~~~~~~v~~yD~~ 132 (617)
+++.++.|+.+. .+.++|+.++.-...- ........++.+ +..+++.|+.++ .+.+||..
T Consensus 138 dg~~l~sgs~d~------~i~iwd~~~~~~~~~~-----~~h~~~V~~~~~~~~~~~~l~s~s~D~------~v~iwd~~ 200 (344)
T 4gqb_B 138 SGTQAVSGSKDI------CIKVWDLAQQVVLSSY-----RAHAAQVTCVAASPHKDSVFLSCSEDN------RILLWDTR 200 (344)
T ss_dssp TSSEEEEEETTS------CEEEEETTTTEEEEEE-----CCCSSCEEEEEECSSCTTEEEEEETTS------CEEEEETT
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEE-----cCcCCceEEEEecCCCCCceeeecccc------cccccccc
Confidence 566777777632 4888898887533221 111111122222 335777777654 37889998
Q ss_pred CCcEEEeecCCCCCCCCcccEEEEE--CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-C
Q 007111 133 SLTWLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-G 209 (617)
Q Consensus 133 t~~W~~l~~~g~~P~~R~~h~a~~~--~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~ 209 (617)
+.+-...- ..........++.+ ++..+++.|+.++ .|.+||+.+++-...-. + ....-.+++.. +
T Consensus 201 ~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~l~sg~~dg-----~v~~wd~~~~~~~~~~~-~---h~~~v~~v~fsp~ 268 (344)
T 4gqb_B 201 CPKPASQI---GCSAPGYLPTSLAWHPQQSEVFVFGDENG-----TVSLVDTKSTSCVLSSA-V---HSQCVTGLVFSPH 268 (344)
T ss_dssp SSSCEEEC---C----CCCEEEEEECSSCTTEEEEEETTS-----EEEEEESCC--CCEEEE-C---CSSCEEEEEECSS
T ss_pred ccceeeee---ecceeeccceeeeecCCCCcceEEeccCC-----cEEEEECCCCcEEEEEc-C---CCCCEEEEEEccC
Confidence 77643321 11111111122222 2333778887764 48899987654321111 0 11112233332 3
Q ss_pred C-EEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 210 T-KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 210 ~-~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
+ .+++.|+..+ .+.+||..+..-.... . -......+.+.. +...+++.||.++ .|.++++.+
T Consensus 269 g~~~lasgs~D~-----~i~vwd~~~~~~~~~~--~-----H~~~V~~v~~sp-~~~~llas~s~D~----~v~~w~v~~ 331 (344)
T 4gqb_B 269 SVPFLASLSEDC-----SLAVLDSSLSELFRSQ--A-----HRDFVRDATWSP-LNHSLLTTVGWDH----QVVHHVVPT 331 (344)
T ss_dssp SSCCEEEEETTS-----CEEEECTTCCEEEEEC--C-----CSSCEEEEEECS-SSTTEEEEEETTS----CEEEEECCC
T ss_pred CCeEEEEEeCCC-----eEEEEECCCCcEEEEc--C-----CCCCEEEEEEeC-CCCeEEEEEcCCC----eEEEEECCC
Confidence 3 5566666543 4788898877543321 1 111233344432 2345777888765 466677654
Q ss_pred C
Q 007111 289 N 289 (617)
Q Consensus 289 ~ 289 (617)
.
T Consensus 332 ~ 332 (344)
T 4gqb_B 332 E 332 (344)
T ss_dssp -
T ss_pred C
Confidence 3
No 86
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=95.89 E-value=0.093 Score=52.67 Aligned_cols=66 Identities=15% Similarity=0.165 Sum_probs=37.1
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
++.+++.|+.+ ..+.+||+.+......-. .+.........+.+ ++..++.||.++ .+.+||+.+
T Consensus 127 ~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~i~d~~~ 192 (366)
T 3k26_A 127 DPNLLLSVSKD------HALRLWNIQTDTLVAIFG--GVEGHRDEVLSADYDLLGEKIMSCGMDH------SLKLWRINS 192 (366)
T ss_dssp CTTEEEEEETT------SCEEEEETTTTEEEEEEC--STTSCSSCEEEEEECTTSSEEEEEETTS------CEEEEESCS
T ss_pred CCCEEEEEeCC------CeEEEEEeecCeEEEEec--ccccccCceeEEEECCCCCEEEEecCCC------CEEEEECCC
Confidence 55677777753 258889998876433321 11122222222232 456677777643 488899876
Q ss_pred Cc
Q 007111 134 LT 135 (617)
Q Consensus 134 ~~ 135 (617)
.+
T Consensus 193 ~~ 194 (366)
T 3k26_A 193 KR 194 (366)
T ss_dssp HH
T ss_pred Cc
Confidence 53
No 87
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=95.89 E-value=1.5 Score=43.05 Aligned_cols=233 Identities=9% Similarity=0.057 Sum_probs=115.8
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-C-CEEEEEcccCCCCCCceEEEEEECCCCcEEEe-ec
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-G-KKVLLVGGKTDSGSDRVSVWTFDTETECWSVV-EA 90 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g-~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~-~~ 90 (617)
..+++||+.+.++..+... . .......-++++.. + +++|+.+.. ..+++||+. .+...+ ..
T Consensus 46 ~~i~~~d~~~g~~~~~~~~-----~---~~~~~~~~~~i~~~~~~g~l~v~~~~-------~~l~~~d~~-g~~~~~~~~ 109 (314)
T 1pjx_A 46 GEILRIDLKTGKKTVICKP-----E---VNGYGGIPAGCQCDRDANQLFVADMR-------LGLLVVQTD-GTFEEIAKK 109 (314)
T ss_dssp CEEEEECTTTCCEEEEECC-----E---ETTEECCEEEEEECSSSSEEEEEETT-------TEEEEEETT-SCEEECCSB
T ss_pred CEEEEEeCCCCcEEEEEec-----c---cCCCCCCCceEEEecCCCcEEEEECC-------CCEEEEeCC-CCEEEEEec
Confidence 4689999888888655420 0 00000112344443 4 788887642 269999998 777665 32
Q ss_pred cCCCCCCcceeEEEEE-CCEEEEEeecCC---------CCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE---
Q 007111 91 KGDIPVARSGHTVVRA-SSVLILFGGEDG---------KRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY--- 157 (617)
Q Consensus 91 ~g~~P~~R~~~s~~~~-~~~IYv~GG~~~---------~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~--- 157 (617)
..........+.++.. ++.+|+...... .......+++||+. .+...+.. .... ....+..
T Consensus 110 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~--~~~~---~~~i~~~~~~ 183 (314)
T 1pjx_A 110 DSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT--AFQF---PNGIAVRHMN 183 (314)
T ss_dssp CTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE--EESS---EEEEEEEECT
T ss_pred cCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc--CCCC---cceEEEeccc
Confidence 1111111222334333 568887654321 11123579999987 66554421 1111 1233444
Q ss_pred -CCc-EEEEEccCCCCCCCCeEEEEECC-CCcEEEeecCCCCCCC--CcceEEEEE-CCEEEEEecCCCCCccceEEEEE
Q 007111 158 -DDK-NLLIFGGSSKSKTLNDLYSLDFE-TMIWTRIKIRGFHPSP--RAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFD 231 (617)
Q Consensus 158 -~~~-~LyV~GG~~~~~~~n~v~~yD~~-t~~W~~~~~~g~~P~~--R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yD 231 (617)
.+. .+|+..... +.+++||+. ++.+.........+.. ..-..++.. ++.+|+..... ..+.+||
T Consensus 184 d~dg~~l~v~~~~~-----~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~-----~~i~~~d 253 (314)
T 1pjx_A 184 DGRPYQLIVAETPT-----KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS-----SHIEVFG 253 (314)
T ss_dssp TSCEEEEEEEETTT-----TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT-----TEEEEEC
T ss_pred CCCCCEEEEEECCC-----CeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC-----CEEEEEc
Confidence 333 477765432 469999976 4544322111001111 111233333 57888875322 3588999
Q ss_pred CCCCcE-EEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 232 ILKGEW-SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 232 l~~~~W-~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
+.+... ..+. .+ . .....+.+. .+...||+.+..+ +.|++|++...-
T Consensus 254 ~~~g~~~~~~~-~~-----~-~~~~~i~~~-~dg~~l~v~~~~~----~~l~~~~~~~~g 301 (314)
T 1pjx_A 254 PDGGQPKMRIR-CP-----F-EKPSNLHFK-PQTKTIFVTEHEN----NAVWKFEWQRNG 301 (314)
T ss_dssp TTCBSCSEEEE-CS-----S-SCEEEEEEC-TTSSEEEEEETTT----TEEEEEECSSCB
T ss_pred CCCCcEeEEEe-CC-----C-CCceeEEEC-CCCCEEEEEeCCC----CeEEEEeCCCCC
Confidence 874432 2222 11 1 123334443 3334577665432 479999987654
No 88
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=95.88 E-value=0.63 Score=46.22 Aligned_cols=185 Identities=10% Similarity=0.072 Sum_probs=90.7
Q ss_pred EEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CC-EEEEEeecCCCCCccCe-EEEEECCCCc-EEEeecCCCCCCCC
Q 007111 74 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLND-LHMFDLKSLT-WLPLHCTGTGPSPR 149 (617)
Q Consensus 74 ~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~-~IYv~GG~~~~~~~~~~-v~~yD~~t~~-W~~l~~~g~~P~~R 149 (617)
.+++||+.+.+....-. .....+.++.. ++ .+|+.+..+ +. +++|+..... ..... ...++...
T Consensus 109 ~i~v~d~~~~~~~~~~~-----~~~~~~~~~~spdg~~l~~~~~~~------~~~i~~~~~~~~g~~~~~~-~~~~~~~~ 176 (331)
T 3u4y_A 109 NMQSYSFLKNKFISTIP-----IPYDAVGIAISPNGNGLILIDRSS------ANTVRRFKIDADGVLFDTG-QEFISGGT 176 (331)
T ss_dssp EEEEEETTTTEEEEEEE-----CCTTEEEEEECTTSSCEEEEEETT------TTEEEEEEECTTCCEEEEE-EEEECSSS
T ss_pred cEEEEECCCCCeEEEEE-----CCCCccceEECCCCCEEEEEecCC------CceEEEEEECCCCcEeecC-CccccCCC
Confidence 79999999887544331 11222344443 33 577665432 23 6667665432 11110 00011111
Q ss_pred cccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcE---EEeecCCCCCCCCcceEEEEE-CC-EEEEEecCCCCCc
Q 007111 150 SNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIW---TRIKIRGFHPSPRAGCCGVLC-GT-KWYIAGGGSRKKR 223 (617)
Q Consensus 150 ~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W---~~~~~~g~~P~~R~~ha~v~~-~~-~IyI~GG~s~~~~ 223 (617)
.-..++.. +++++|+.+..+ +.+.+||+.+++. ......+ ..+ ..++.. ++ .+|+..+..
T Consensus 177 ~~~~~~~spdg~~l~v~~~~~-----~~v~v~d~~~~~~~~~~~~~~~~--~~~---~~~~~spdg~~l~v~~~~~---- 242 (331)
T 3u4y_A 177 RPFNITFTPDGNFAFVANLIG-----NSIGILETQNPENITLLNAVGTN--NLP---GTIVVSRDGSTVYVLTEST---- 242 (331)
T ss_dssp SEEEEEECTTSSEEEEEETTT-----TEEEEEECSSTTSCEEEEEEECS--SCC---CCEEECTTSSEEEEECSSE----
T ss_pred CccceEECCCCCEEEEEeCCC-----CeEEEEECCCCcccceeeeccCC--CCC---ceEEECCCCCEEEEEEcCC----
Confidence 12233333 455577766443 4699999988775 2222221 111 123332 34 467664422
Q ss_pred cceEEEEECCCCcEEEeecCCCC---CCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 224 HAETLIFDILKGEWSVAITSPSS---SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 224 ~~~v~~yDl~~~~W~~l~~~~~~---~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
+.+++||+.+.+...+...+.. .+........+.+.. +...||+.++.+ +.|.+||+....
T Consensus 243 -~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~----~~v~v~d~~~~~ 306 (331)
T 3u4y_A 243 -VDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNK-TETKLFISANIS----RELKVFTISGKV 306 (331)
T ss_dssp -EEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECT-TSSEEEEEETTT----TEEEEEETTSCE
T ss_pred -CEEEEEECCCCceeeecccccccccCCCCcccccceEECC-CCCEEEEecCCC----CcEEEEEecCCc
Confidence 4588999998877554322211 011111112233332 335666665532 478999987654
No 89
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=95.87 E-value=0.63 Score=46.30 Aligned_cols=216 Identities=10% Similarity=-0.057 Sum_probs=105.4
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..+++||+.+........ +... .+++.. ++++|+..+ ..+++||+.+.+++.+....
T Consensus 35 ~~i~~~d~~~~~~~~~~~-------------~~~~-~~i~~~~dG~l~v~~~--------~~l~~~d~~~g~~~~~~~~~ 92 (297)
T 3g4e_A 35 KKVCRWDSFTKQVQRVTM-------------DAPV-SSVALRQSGGYVATIG--------TKFCALNWKEQSAVVLATVD 92 (297)
T ss_dssp TEEEEEETTTCCEEEEEC-------------SSCE-EEEEEBTTSSEEEEET--------TEEEEEETTTTEEEEEEECC
T ss_pred CEEEEEECCCCcEEEEeC-------------CCce-EEEEECCCCCEEEEEC--------CeEEEEECCCCcEEEEEecC
Confidence 468888888776544332 1111 233333 556665431 36999999999888776321
Q ss_pred C-CCCCcceeEEEEECCEEEEEeecCCC-----CCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEE
Q 007111 93 D-IPVARSGHTVVRASSVLILFGGEDGK-----RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIF 165 (617)
Q Consensus 93 ~-~P~~R~~~s~~~~~~~IYv~GG~~~~-----~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~ 165 (617)
. .+..+.....+--++.+|+-.-.... ......+|++|+. .+...+.. .+.. -...+.. +++.+|+.
T Consensus 93 ~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~--~~~~---pngi~~spdg~~lyv~ 166 (297)
T 3g4e_A 93 NDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFD--QVDI---SNGLDWSLDHKIFYYI 166 (297)
T ss_dssp TTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEE--EESB---EEEEEECTTSCEEEEE
T ss_pred CCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEee--cccc---ccceEEcCCCCEEEEe
Confidence 1 12222222222225677764321110 0123578999875 34433321 1111 1233333 34457777
Q ss_pred ccCCCCCCCCeEEEEEC--CCCcEEEeecCCCCCC-CCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEee
Q 007111 166 GGSSKSKTLNDLYSLDF--ETMIWTRIKIRGFHPS-PRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 241 (617)
Q Consensus 166 GG~~~~~~~n~v~~yD~--~t~~W~~~~~~g~~P~-~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~ 241 (617)
.... +.|++||. .++...........+. ...-..++.. ++.+|+..... ..+++||+.+.+....-
T Consensus 167 ~~~~-----~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~-----~~v~~~d~~tG~~~~~i 236 (297)
T 3g4e_A 167 DSLS-----YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG-----GRVIRLDPVTGKRLQTV 236 (297)
T ss_dssp EGGG-----TEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT-----TEEEEECTTTCCEEEEE
T ss_pred cCCC-----CcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC-----CEEEEEcCCCceEEEEE
Confidence 5433 45888876 5665532111100111 1111233333 67888875322 35899999866544332
Q ss_pred cCCCCCCCCCcceEEEEEeecCCcEEEEEcCC
Q 007111 242 TSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI 273 (617)
Q Consensus 242 ~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~ 273 (617)
..+ .....++.+...+...|||.-..
T Consensus 237 ~~p------~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 237 KLP------VDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp ECS------SSBEEEEEEESGGGCEEEEEEBC
T ss_pred ECC------CCCceEEEEeCCCCCEEEEEcCC
Confidence 111 12234445542334567776544
No 90
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=95.82 E-value=1 Score=46.91 Aligned_cols=222 Identities=12% Similarity=0.095 Sum_probs=104.7
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDI 94 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~ 94 (617)
.+.+||+.+.+-...-. . -..+ ..++..++.+++.|+.+ ..++.+|............+
T Consensus 170 ~v~iWd~~~~~~~~~~~----------~-h~~~--v~~~s~~~~~l~sgs~d------~~i~~~d~~~~~~~~~~~~~-- 228 (420)
T 4gga_A 170 EVQLWDVQQQKRLRNMT----------S-HSAR--VGSLSWNSYILSSGSRS------GHIHHHDVRVAEHHVATLSG-- 228 (420)
T ss_dssp CEEEEETTTTEEEEEEC----------C-CSSC--EEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEEC--
T ss_pred eEEEEEcCCCcEEEEEe----------C-CCCc--eEEEeeCCCEEEEEeCC------CceeEeeecccceeeEEecc--
Confidence 48888988776432221 0 1111 23445566777777653 25777787665433222111
Q ss_pred CCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEeecCCCCCCCCcccEEEEE--CCcEEEEEccCCC
Q 007111 95 PVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSK 170 (617)
Q Consensus 95 P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~h~a~~~--~~~~LyV~GG~~~ 170 (617)
............++.+++.||.++ .+.++|..+.. +..+........+ -.+.+.. +...+++.||..+
T Consensus 229 h~~~~~~~~~~~~g~~l~s~~~D~------~v~i~~~~~~~~~~~~~~~~~~~~~~--V~~~~~~p~~~~~la~~~gs~D 300 (420)
T 4gga_A 229 HSQEVCGLRWAPDGRHLASGGNDN------LVNVWPSAPGEGGWVPLQTFTQHQGA--VKAVAWCPWQSNVLATGGGTSD 300 (420)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTS------CEEEEESSCCSSCSCCSEEECCCSSC--EEEEEECTTCTTEEEEEECTTT
T ss_pred cccceeeeeecCCCCeeeeeeccc------cceEEeeccccccceeeeeecccCCc--eeeeeeCCCcccEEEEEeecCC
Confidence 111111111122456666666544 36777776543 1111100010111 1122222 3443444445433
Q ss_pred CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCC
Q 007111 171 SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSV 248 (617)
Q Consensus 171 ~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p 248 (617)
..|..||+.++........ . ....+++.. ++.+++.+|..+ ..+.+||..+..-... ...
T Consensus 301 ----~~I~iwd~~t~~~~~~~~~---~--~~v~~~~~~~~~~~lv~~sg~~d----~~I~iwd~~~~~~v~~--l~g--- 362 (420)
T 4gga_A 301 ----RHIRIWNVCSGACLSAVDA---H--SQVCSILWSPHYKELISGHGFAQ----NQLVIWKYPTMAKVAE--LKG--- 362 (420)
T ss_dssp ----CEEEEEETTTTEEEEEEEC---S--SCEEEEEEETTTTEEEEEECTTT----CCEEEEETTTCCEEEE--ECC---
T ss_pred ----CEEEEEeCCccccceeecc---c--cceeeeeecCCCCeEEEEEecCC----CEEEEEECCCCcEEEE--EcC---
Confidence 3588999988876654432 1 112233333 455665556543 3488999876543221 111
Q ss_pred CCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 249 TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 249 ~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
-......+.+.. ++.+++.||.++ .|.++|+....
T Consensus 363 -H~~~V~~l~~sp--dg~~l~S~s~D~----tvriWdv~~~~ 397 (420)
T 4gga_A 363 -HTSRVLSLTMSP--DGATVASAAADE----TLRLWRCFELD 397 (420)
T ss_dssp -CSSCEEEEEECT--TSSCEEEEETTT----EEEEECCSCSS
T ss_pred -CCCCEEEEEEcC--CCCEEEEEecCC----eEEEEECCCCC
Confidence 011233334432 244677788764 57778775543
No 91
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.82 E-value=1.1 Score=50.76 Aligned_cols=180 Identities=13% Similarity=0.059 Sum_probs=90.9
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCC-cEEEeecc
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETE-CWSVVEAK 91 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~~ 91 (617)
..+.+||..+.+....-.. . ... -.+++.. ++..++.|+.+ ..+.+||+.++ .....-.
T Consensus 77 g~i~vw~~~~~~~~~~~~~----------~-~~~-v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~- 137 (814)
T 3mkq_A 77 FRIRVFNYNTGEKVVDFEA----------H-PDY-IRSIAVHPTKPYVLSGSDD------LTVKLWNWENNWALEQTFE- 137 (814)
T ss_dssp SEEEEEETTTCCEEEEEEC----------C-SSC-EEEEEECSSSSEEEEEETT------SEEEEEEGGGTSEEEEEEE-
T ss_pred CeEEEEECCCCcEEEEEec----------C-CCC-EEEEEEeCCCCEEEEEcCC------CEEEEEECCCCceEEEEEc-
Confidence 3689999988776433220 0 111 1222222 45555666642 25888888776 3322211
Q ss_pred CCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE---CCcEEEEEc
Q 007111 92 GDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY---DDKNLLIFG 166 (617)
Q Consensus 92 g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~---~~~~LyV~G 166 (617)
. ....-.+++.. ++.+++.|+.++ .+.+||+.+..-..... .. ....-..++.. ++. ++++|
T Consensus 138 -~--~~~~v~~~~~~p~~~~~l~~~~~dg------~v~vwd~~~~~~~~~~~-~~--~~~~v~~~~~~~~~~~~-~l~~~ 204 (814)
T 3mkq_A 138 -G--HEHFVMCVAFNPKDPSTFASGCLDR------TVKVWSLGQSTPNFTLT-TG--QERGVNYVDYYPLPDKP-YMITA 204 (814)
T ss_dssp -C--CSSCEEEEEEETTEEEEEEEEETTS------EEEEEETTCSSCSEEEE-CC--CTTCCCEEEECCSTTCC-EEEEE
T ss_pred -C--CCCcEEEEEEEcCCCCEEEEEeCCC------eEEEEECCCCcceeEEe-cC--CCCCEEEEEEEECCCCC-EEEEE
Confidence 1 11111223333 456777777543 58899987654222110 11 11111233333 455 77777
Q ss_pred cCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEE
Q 007111 167 GSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSV 239 (617)
Q Consensus 167 G~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~ 239 (617)
+.++ .+..||..++........ . ...-.+++.. ++.+++.|+..+ .+.+||+.+.....
T Consensus 205 ~~dg-----~i~~~d~~~~~~~~~~~~---~-~~~v~~~~~~~~~~~l~~~~~dg-----~v~vwd~~~~~~~~ 264 (814)
T 3mkq_A 205 SDDL-----TIKIWDYQTKSCVATLEG---H-MSNVSFAVFHPTLPIIISGSEDG-----TLKIWNSSTYKVEK 264 (814)
T ss_dssp CTTS-----EEEEEETTTTEEEEEEEC---C-SSCEEEEEECSSSSEEEEEETTS-----CEEEEETTTCSEEE
T ss_pred eCCC-----EEEEEECCCCcEEEEEcC---C-CCCEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCcEEE
Confidence 7654 599999987764433221 1 1111223333 556777777543 48889988765433
No 92
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=95.81 E-value=1.8 Score=43.77 Aligned_cols=170 Identities=10% Similarity=0.062 Sum_probs=84.7
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
.+.+||..+..|...... ...... ....+.+ ++..++.|+.+. .+.+||..+..+..+..
T Consensus 39 ~i~iw~~~~~~~~~~~~~---------~~~h~~-~v~~~~~sp~g~~l~s~s~D~------~v~iw~~~~~~~~~~~~-- 100 (345)
T 3fm0_A 39 RIRIWGTEGDSWICKSVL---------SEGHQR-TVRKVAWSPCGNYLASASFDA------TTCIWKKNQDDFECVTT-- 100 (345)
T ss_dssp CEEEEEEETTEEEEEEEE---------CSSCSS-CEEEEEECTTSSEEEEEETTS------CEEEEEECCC-EEEEEE--
T ss_pred eEEEEEcCCCcceeeeee---------ccccCC-cEEEEEECCCCCEEEEEECCC------cEEEEEccCCCeEEEEE--
Confidence 488888888877533221 000111 1222233 566777777632 36667776766654432
Q ss_pred CCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCc-EEEeecCCCCCCCCccc-EEEEE-CCcEEEEEcc
Q 007111 93 DIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLT-WLPLHCTGTGPSPRSNH-VAALY-DDKNLLIFGG 167 (617)
Q Consensus 93 ~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~-W~~l~~~g~~P~~R~~h-~a~~~-~~~~LyV~GG 167 (617)
+........++.+ ++.+++.|+.++ .+.+||+.+.. +..+.. +....... +++.. ++. +++.|+
T Consensus 101 -~~~h~~~v~~v~~sp~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~---~~~h~~~v~~~~~~p~~~-~l~s~s 169 (345)
T 3fm0_A 101 -LEGHENEVKSVAWAPSGNLLATCSRDK------SVWVWEVDEEDEYECVSV---LNSHTQDVKHVVWHPSQE-LLASAS 169 (345)
T ss_dssp -ECCCSSCEEEEEECTTSSEEEEEETTS------CEEEEEECTTSCEEEEEE---ECCCCSCEEEEEECSSSS-CEEEEE
T ss_pred -ccCCCCCceEEEEeCCCCEEEEEECCC------eEEEEECCCCCCeEEEEE---ecCcCCCeEEEEECCCCC-EEEEEe
Confidence 1111112222222 467777777654 37888887643 333321 11111111 22222 345 777787
Q ss_pred CCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCC
Q 007111 168 SSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSR 220 (617)
Q Consensus 168 ~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~ 220 (617)
.++. +..||..+..|......... ...-.+++.. ++..++.|+..+
T Consensus 170 ~d~~-----i~~w~~~~~~~~~~~~~~~h--~~~v~~l~~sp~g~~l~s~s~D~ 216 (345)
T 3fm0_A 170 YDDT-----VKLYREEEDDWVCCATLEGH--ESTVWSLAFDPSGQRLASCSDDR 216 (345)
T ss_dssp TTSC-----EEEEEEETTEEEEEEEECCC--SSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCc-----EEEEEecCCCEEEEEEecCC--CCceEEEEECCCCCEEEEEeCCC
Confidence 7653 88899988888755443111 1111233332 566667776543
No 93
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=95.79 E-value=0.89 Score=45.69 Aligned_cols=235 Identities=12% Similarity=0.107 Sum_probs=110.4
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDI 94 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~ 94 (617)
.++.+|..+.++..+..... ...| ...+..-++++|+.+... ....+++||+.+..++.+... .
T Consensus 19 ~v~~~d~~tg~~~~~~~~~~-------~~~p---~~~a~spdg~l~~~~~~~----~~~~v~~~~~~~g~~~~~~~~--~ 82 (347)
T 3hfq_A 19 YQGTLDTTAKTLTNDGLLAA-------TQNP---TYLALSAKDCLYSVDKED----DEGGIAAWQIDGQTAHKLNTV--V 82 (347)
T ss_dssp EEEEEETTTTEEEEEEEEEE-------CSCC---CCEEECTTCEEEEEEEET----TEEEEEEEEEETTEEEEEEEE--E
T ss_pred EEEEEcCCCCeEEEeeeeec-------cCCc---ceEEEccCCeEEEEEecC----CCceEEEEEecCCcEEEeeee--e
Confidence 47777888888876543110 1011 112222366777765321 124799999988887666531 0
Q ss_pred CCCcceeEEEE-ECC-EEEEEeecCCCCCccCeEEEEECC-CCcEEEe---ecCCCCCCCC----cccEEEEE-CCcEEE
Q 007111 95 PVARSGHTVVR-ASS-VLILFGGEDGKRRKLNDLHMFDLK-SLTWLPL---HCTGTGPSPR----SNHVAALY-DDKNLL 163 (617)
Q Consensus 95 P~~R~~~s~~~-~~~-~IYv~GG~~~~~~~~~~v~~yD~~-t~~W~~l---~~~g~~P~~R----~~h~a~~~-~~~~Ly 163 (617)
........++. -++ .||+.+.. ...+.+||+. +.....+ ...+..|.+| .-+.+++. +++ +|
T Consensus 83 ~~~~~p~~~a~spdg~~l~~~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~ 155 (347)
T 3hfq_A 83 APGTPPAYVAVDEARQLVYSANYH------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LA 155 (347)
T ss_dssp EESCCCSEEEEETTTTEEEEEETT------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EE
T ss_pred cCCCCCEEEEECCCCCEEEEEeCC------CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EE
Confidence 11112222333 234 56665421 2457888875 3333333 2112222222 12233333 455 77
Q ss_pred EEccCCCCCCCCeEEEEECC-CCcEEEeecCCCCCCCCcceEEEEE-CC-EEEEEecCCCCCccceEEEEECC--CCcEE
Q 007111 164 IFGGSSKSKTLNDLYSLDFE-TMIWTRIKIRGFHPSPRAGCCGVLC-GT-KWYIAGGGSRKKRHAETLIFDIL--KGEWS 238 (617)
Q Consensus 164 V~GG~~~~~~~n~v~~yD~~-t~~W~~~~~~g~~P~~R~~ha~v~~-~~-~IyI~GG~s~~~~~~~v~~yDl~--~~~W~ 238 (617)
+.+..+ +.+++||+. ++....+.... .+....-..++.. ++ .+|+.+... +.+.+|++. +..+.
T Consensus 156 v~~~~~-----~~v~~~~~~~~g~~~~~~~~~-~~~g~~p~~~~~spdg~~l~v~~~~~-----~~v~v~~~~~~~g~~~ 224 (347)
T 3hfq_A 156 VIDLGS-----DKVYVYNVSDAGQLSEQSVLT-MEAGFGPRHLVFSPDGQYAFLAGELS-----SQIASLKYDTQTGAFT 224 (347)
T ss_dssp EEETTT-----TEEEEEEECTTSCEEEEEEEE-CCTTCCEEEEEECTTSSEEEEEETTT-----TEEEEEEEETTTTEEE
T ss_pred EEeCCC-----CEEEEEEECCCCcEEEeeeEE-cCCCCCCceEEECCCCCEEEEEeCCC-----CEEEEEEecCCCCceE
Confidence 765433 368999987 66666543211 1111111123332 44 477765433 234455443 56665
Q ss_pred EeecCCCCC--CCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 239 VAITSPSSS--VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 239 ~l~~~~~~~--p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
.+....... .........+.+.. +...||+.+.. .+.|.+|++..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~l~v~~~~----~~~v~v~~~~~ 271 (347)
T 3hfq_A 225 QLGIVKTIPADYTAHNGAAAIRLSH-DGHFLYVSNRG----YNTLAVFAVTA 271 (347)
T ss_dssp EEEEEESSCTTCCSCCEEEEEEECT-TSCEEEEEEET----TTEEEEEEECG
T ss_pred EeeeeeecCCCCCCCCcceeEEECC-CCCEEEEEeCC----CCEEEEEEECC
Confidence 443211111 11112334444543 33467666543 24688888763
No 94
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=95.77 E-value=0.38 Score=48.35 Aligned_cols=157 Identities=11% Similarity=-0.056 Sum_probs=96.1
Q ss_pred ceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEE
Q 007111 99 SGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLY 178 (617)
Q Consensus 99 ~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~ 178 (617)
+...+...++.||+..|..+. +..+|+.+.+-..-- ++..-++.+++..+++ ||+....+ +.++
T Consensus 56 ftqGL~~~~~~Ly~stG~~g~------v~~iD~~Tgkv~~~~----l~~~~FgeGit~~g~~-Ly~ltw~~-----~~v~ 119 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQGT------LRQLSLESAQPVWME----RLGNIFAEGLASDGER-LYQLTWTE-----GLLF 119 (268)
T ss_dssp CEEEEEEETTEEEEEETTTTE------EEECCSSCSSCSEEE----ECTTCCEEEEEECSSC-EEEEESSS-----CEEE
T ss_pred ccceEEEECCEEEEEcCCCCE------EEEEECCCCcEEeEE----CCCCcceeEEEEeCCE-EEEEEccC-----CEEE
Confidence 345666778999999886543 889999988643321 2333455567777777 99986554 5699
Q ss_pred EEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEE-eecCCCCCCCCCcceEEE
Q 007111 179 SLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV-AITSPSSSVTSNKGFTLV 257 (617)
Q Consensus 179 ~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~-l~~~~~~~p~~r~~~s~v 257 (617)
+||+.+.+-..--.. +-.+.+++..++.+|+.-| + +.++.+|+.+.+-.. +.......+.... --+.
T Consensus 120 V~D~~Tl~~~~ti~~-----~~eGwGLt~Dg~~L~vSdG-s-----~~l~~iDp~T~~v~~~I~V~~~g~~v~~l-NeLe 187 (268)
T 3nok_A 120 TWSGMPPQRERTTRY-----SGEGWGLCYWNGKLVRSDG-G-----TMLTFHEPDGFALVGAVQVKLRGQPVELI-NELE 187 (268)
T ss_dssp EEETTTTEEEEEEEC-----SSCCCCEEEETTEEEEECS-S-----SEEEEECTTTCCEEEEEECEETTEECCCE-EEEE
T ss_pred EEECCcCcEEEEEeC-----CCceeEEecCCCEEEEECC-C-----CEEEEEcCCCCeEEEEEEeCCCCcccccc-cccE
Confidence 999988765543332 2234566777889999865 2 479999999876433 3221111011010 1112
Q ss_pred EEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 258 LVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 258 ~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
.. ++.||+ .-+ ..+.|.+.|+.+.+-
T Consensus 188 ~~----dG~lya-nvw---~s~~I~vIDp~TG~V 213 (268)
T 3nok_A 188 CA----NGVIYA-NIW---HSSDVLEIDPATGTV 213 (268)
T ss_dssp EE----TTEEEE-EET---TCSEEEEECTTTCBE
T ss_pred Ee----CCEEEE-EEC---CCCeEEEEeCCCCcE
Confidence 22 256774 222 246899999988873
No 95
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=95.77 E-value=3.3 Score=46.98 Aligned_cols=124 Identities=15% Similarity=0.068 Sum_probs=69.3
Q ss_pred EEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEeeccCCC--CCCc---ceeEEEEECCEEEEEeecCCCCCccC
Q 007111 52 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDI--PVAR---SGHTVVRASSVLILFGGEDGKRRKLN 124 (617)
Q Consensus 52 ~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~--P~~R---~~~s~~~~~~~IYv~GG~~~~~~~~~ 124 (617)
-++.++.||+.+.. ..++.+|..+.+ |+.-...... +..+ ...+.++.++.||+... -.
T Consensus 66 P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-------dg 131 (689)
T 1yiq_A 66 PIVVDGVMYTTGPF-------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-------DG 131 (689)
T ss_dssp CEEETTEEEEECGG-------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TS
T ss_pred CEEECCEEEEEcCC-------CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-------CC
Confidence 34679999998653 359999998775 8865411100 0000 11234567888887531 24
Q ss_pred eEEEEECCCCc--EEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCc--EEEe
Q 007111 125 DLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRI 190 (617)
Q Consensus 125 ~v~~yD~~t~~--W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~ 190 (617)
.++.+|..+.+ |+.-.............+-++.++. +|+-.+......-..++.||..|++ |+..
T Consensus 132 ~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 132 RLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp EEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 68999998875 8865310000001112233445665 6553222111234579999998876 8765
No 96
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.76 E-value=1.6 Score=48.38 Aligned_cols=124 Identities=10% Similarity=0.116 Sum_probs=68.7
Q ss_pred EEEECCEEEEEcccCCCCCCceEEEEEEC-CCCc--EEEeeccCC--CCCC---cceeEEEEECCEEEEEeecCCCCCcc
Q 007111 52 LISWGKKVLLVGGKTDSGSDRVSVWTFDT-ETEC--WSVVEAKGD--IPVA---RSGHTVVRASSVLILFGGEDGKRRKL 123 (617)
Q Consensus 52 ~v~~g~~lyV~GG~~~~~~~~~~v~~yd~-~t~~--W~~~~~~g~--~P~~---R~~~s~~~~~~~IYv~GG~~~~~~~~ 123 (617)
-++.++.||+.+.. ...++.+|. .+.+ |+.-..... .+.. ....+.++.++.||+... .
T Consensus 58 P~v~~g~vyv~~~~------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------d 124 (571)
T 2ad6_A 58 PLVIGDMMYVHSAF------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-------N 124 (571)
T ss_dssp CEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------T
T ss_pred cEEECCEEEEEeCC------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC-------C
Confidence 34569999998652 125999999 7765 886542110 0000 111234567888888632 2
Q ss_pred CeEEEEECCCCc--EEEeecCCCCCCC-CcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCc--EEEee
Q 007111 124 NDLHMFDLKSLT--WLPLHCTGTGPSP-RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIK 191 (617)
Q Consensus 124 ~~v~~yD~~t~~--W~~l~~~g~~P~~-R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~~ 191 (617)
..++.+|..+.+ |+.-. +..+.. ....+-++.++. +|+-.+......-..++.||..+++ |+...
T Consensus 125 g~l~alD~~tG~~~W~~~~--~~~~~~~~~~~~P~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 125 GHLLALDAKTGKINWEVEV--CDPKVGSTLTQAPFVAKDT-VLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp SEEEEEETTTCCEEEEEEC--CCGGGTCBCCSCCEEETTE-EEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CEEEEEECCCCCEEEEecC--CCCCccceeccCCEEECCE-EEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence 469999998875 88542 111100 111222345665 6654332111123569999998754 77543
No 97
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=95.76 E-value=0.2 Score=52.88 Aligned_cols=150 Identities=8% Similarity=0.047 Sum_probs=73.8
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 134 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~ 134 (617)
++.+++.||.+. .+.++|+.++....+..... ......++.. -++.+++.|+.++ .+.+||....
T Consensus 176 ~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~g~~dg------~i~~wd~~~~ 241 (435)
T 4e54_B 176 NTNQFYASSMEG------TTRLQDFKGNILRVFASSDT--INIWFCSLDVSASSRMVVTGDNVG------NVILLNMDGK 241 (435)
T ss_dssp CTTEEEEECSSS------CEEEEETTSCEEEEEECCSS--CSCCCCCEEEETTTTEEEEECSSS------BEEEEESSSC
T ss_pred CCCEEEEEeCCC------EEEEeeccCCceeEEeccCC--CCccEEEEEECCCCCEEEEEeCCC------cEeeeccCcc
Confidence 456667776532 47788998887665542111 1111112222 3567777776544 4788888654
Q ss_pred cEEEeecCCCCCCCCcccEEEEE--CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE
Q 007111 135 TWLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK 211 (617)
Q Consensus 135 ~W~~l~~~g~~P~~R~~h~a~~~--~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~ 211 (617)
.-..+ ......-.++.+ .+..+++.|+.++. |.+||+.+......... ..+....-.+++.. ++.
T Consensus 242 ~~~~~------~~h~~~v~~v~~~p~~~~~~~s~s~d~~-----v~iwd~~~~~~~~~~~~-~~~h~~~v~~~~~spdg~ 309 (435)
T 4e54_B 242 ELWNL------RMHKKKVTHVALNPCCDWFLATASVDQT-----VKIWDLRQVRGKASFLY-SLPHRHPVNAACFSPDGA 309 (435)
T ss_dssp BCCCS------BCCSSCEEEEEECTTCSSEEEEEETTSB-----CCEEETTTCCSSSCCSB-CCBCSSCEEECCBCTTSS
T ss_pred eeEEE------ecccceEEeeeecCCCceEEEEecCcce-----eeEEecccccccceEEE-eeeccccccceeECCCCC
Confidence 32211 111111122333 33337777777643 67788765432111000 00011111122222 556
Q ss_pred EEEEecCCCCCccceEEEEECCCCc
Q 007111 212 WYIAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 212 IyI~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
.++.|+..+ .+.+||+.+..
T Consensus 310 ~l~s~~~D~-----~i~iwd~~~~~ 329 (435)
T 4e54_B 310 RLLTTDQKS-----EIRVYSASQWD 329 (435)
T ss_dssp EEEEEESSS-----CEEEEESSSSS
T ss_pred eeEEEcCCC-----EEEEEECCCCc
Confidence 667776553 47888887643
No 98
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=95.65 E-value=0.27 Score=50.00 Aligned_cols=151 Identities=12% Similarity=0.078 Sum_probs=75.6
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
++.+++.|+.+ ..+.+||+.+....... ..+........... ++.+++.|+.++ .+.+||+.+
T Consensus 111 ~~~~l~s~~~d------~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~d~~~ 175 (408)
T 4a11_B 111 DTGMFTSSSFD------KTLKVWDTNTLQTADVF---NFEETVYSHHMSPVSTKHCLVAVGTRGP------KVQLCDLKS 175 (408)
T ss_dssp CTTCEEEEETT------SEEEEEETTTTEEEEEE---ECSSCEEEEEECSSCSSCCEEEEEESSS------SEEEEESSS
T ss_pred CCcEEEEEeCC------CeEEEeeCCCCccceec---cCCCceeeeEeecCCCCCcEEEEEcCCC------eEEEEeCCC
Confidence 44577777653 26888999887654443 12222222111111 334677776543 488999887
Q ss_pred CcEEEeecCCCCCCCCcccEEE-EE-CCcEEEEEccCCCCCCCCeEEEEECCCCc--EEEeecCC-----C-----CCCC
Q 007111 134 LTWLPLHCTGTGPSPRSNHVAA-LY-DDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRG-----F-----HPSP 199 (617)
Q Consensus 134 ~~W~~l~~~g~~P~~R~~h~a~-~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~~~~g-----~-----~P~~ 199 (617)
..-...- ........++ .. ++.++++.|+.++. +..||+.+.. ...+.... . ....
T Consensus 176 ~~~~~~~-----~~~~~~v~~~~~~~~~~~ll~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (408)
T 4a11_B 176 GSCSHIL-----QGHRQEILAVSWSPRYDYILATASADSR-----VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHN 245 (408)
T ss_dssp SCCCEEE-----CCCCSCEEEEEECSSCTTEEEEEETTSC-----EEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCS
T ss_pred cceeeee-----cCCCCcEEEEEECCCCCcEEEEEcCCCc-----EEEEECCCCCcccccccccccccceeecccccccc
Confidence 6533221 1111111222 22 33336778877654 8899986543 11111100 0 0011
Q ss_pred CcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCc
Q 007111 200 RAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 200 R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
..-.+++.. ++..++.|+..+ .+.+||+.+..
T Consensus 246 ~~v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~ 278 (408)
T 4a11_B 246 GKVNGLCFTSDGLHLLTVGTDN-----RMRLWNSSNGE 278 (408)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCC
T ss_pred CceeEEEEcCCCCEEEEecCCC-----eEEEEECCCCc
Confidence 111222332 556667776553 48899988764
No 99
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.77 Score=46.32 Aligned_cols=198 Identities=15% Similarity=0.142 Sum_probs=94.6
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCC--CcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEEC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTET--ECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDL 131 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t--~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~ 131 (617)
+++.++.|+.+. .+.+||+.. ..+..+.. +.........+.+ ++.+++.||.++ .+.+||.
T Consensus 118 ~g~~las~s~D~------~v~iwd~~~~~~~~~~~~~---~~~h~~~v~~v~~~p~~~~l~s~s~D~------~i~iW~~ 182 (330)
T 2hes_X 118 DGYYLATCSRDK------SVWIWETDESGEEYECISV---LQEHSQDVKHVIWHPSEALLASSSYDD------TVRIWKD 182 (330)
T ss_dssp TSCEEEEEETTS------CEEEEECCTTCCCCEEEEE---ECCCSSCEEEEEECSSSSEEEEEETTS------CEEEEEE
T ss_pred CCCEEEEEeCCC------EEEEEeccCCCCCeEEEEE---eccCCCceEEEEECCCCCEEEEEcCCC------eEEEEEC
Confidence 456677776532 477778742 33443331 1111112222222 456777777654 3778888
Q ss_pred CCCcEEEeecCCCCCCCCcc-cEEEEECC--cEEEEEccCCCCCCCCeEEEEECCC------CcEEEeecCCCCCCCCcc
Q 007111 132 KSLTWLPLHCTGTGPSPRSN-HVAALYDD--KNLLIFGGSSKSKTLNDLYSLDFET------MIWTRIKIRGFHPSPRAG 202 (617)
Q Consensus 132 ~t~~W~~l~~~g~~P~~R~~-h~a~~~~~--~~LyV~GG~~~~~~~n~v~~yD~~t------~~W~~~~~~g~~P~~R~~ 202 (617)
.+..|..+.. +...... .++....+ ...++.|+.++. |.+||+.+ ..|........ .....-
T Consensus 183 ~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~-----v~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v 253 (330)
T 2hes_X 183 YDDDWECVAV---LNGHEGTVWSSDFDKTEGVFRLCSGSDDST-----VRVWKYMGDDEDDQQEWVCEAILPD-VHKRQV 253 (330)
T ss_dssp ETTEEEEEEE---ECCCSSCEEEEEECCSSSSCEEEEEETTSC-----EEEEEEEEECTTSCEEEEEEEECCS-CCSSCE
T ss_pred CCCCeeEEEE---ccCCCCcEEEEEecCCCCeeEEEEEeCCCe-----EEEEEecCCCccccceeEEeeeccc-ccccce
Confidence 7777766531 1111111 12222222 325667776643 66666543 24555444311 011222
Q ss_pred eEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEE
Q 007111 203 CCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVE 282 (617)
Q Consensus 203 ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~ 282 (617)
.+++...+.+++.||..+ .+.+||..+..|..+...... ........+.+...+++.+++.||.++ .|.
T Consensus 254 ~~v~~s~~~~l~s~~~dg-----~v~iw~~~~~~~~~~~~~~~~--h~~~~v~~v~~~~~~~~~~las~s~Dg----~v~ 322 (330)
T 2hes_X 254 YNVAWGFNGLIASVGADG-----VLAVYEEVDGEWKVFAKRALC--HGVYEINVVKWLELNGKTILATGGDDG----IVN 322 (330)
T ss_dssp EEEEECTTSCEEEEETTS-----CEEEEEEETTEEEEEEEESCT--TTTSCEEEEEEC-----CCEEEEETTS----EEE
T ss_pred EEEEEcCCCEEEEEeCCC-----EEEEEEcCCCceEEEeccccc--cccceEEEEEEecCCCceEEEEecCCC----cEE
Confidence 333333455666666543 477888888888665321100 111123334443221245677888764 577
Q ss_pred EEECCC
Q 007111 283 VLSIEK 288 (617)
Q Consensus 283 vyd~~~ 288 (617)
+||+++
T Consensus 323 ~W~~~~ 328 (330)
T 2hes_X 323 FWSLEK 328 (330)
T ss_dssp EEEC--
T ss_pred EEEecc
Confidence 777654
No 100
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=95.56 E-value=0.64 Score=47.19 Aligned_cols=226 Identities=10% Similarity=0.038 Sum_probs=103.1
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeecc
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 91 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 91 (617)
..+.+||+.+......-.. .. .....+.... ++.+++.|+.+ ..+.+||+.+......-
T Consensus 122 ~~i~iwd~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~~~~------~~v~~~d~~~~~~~~~~-- 182 (408)
T 4a11_B 122 KTLKVWDTNTLQTADVFNF----------EE-TVYSHHMSPVSTKHCLVAVGTRG------PKVQLCDLKSGSCSHIL-- 182 (408)
T ss_dssp SEEEEEETTTTEEEEEEEC----------SS-CEEEEEECSSCSSCCEEEEEESS------SSEEEEESSSSCCCEEE--
T ss_pred CeEEEeeCCCCccceeccC----------CC-ceeeeEeecCCCCCcEEEEEcCC------CeEEEEeCCCcceeeee--
Confidence 3588899888765433321 11 1111111111 33466666653 24888888766432211
Q ss_pred CCCCCCcceeEEEEE--C-CEEEEEeecCCCCCccCeEEEEECCCCc--EEEeecC-----CCC----CCCCcccE-EEE
Q 007111 92 GDIPVARSGHTVVRA--S-SVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCT-----GTG----PSPRSNHV-AAL 156 (617)
Q Consensus 92 g~~P~~R~~~s~~~~--~-~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~-----g~~----P~~R~~h~-a~~ 156 (617)
........+..+ + ..+++.|+.++ .+.+||+.+.. ...+... ... ......-. ++.
T Consensus 183 ---~~~~~~v~~~~~~~~~~~ll~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 183 ---QGHRQEILAVSWSPRYDYILATASADS------RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp ---CCCCSCEEEEEECSSCTTEEEEEETTS------CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred ---cCCCCcEEEEEECCCCCcEEEEEcCCC------cEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence 111112222222 2 34777777654 37888887653 2222100 000 11111112 222
Q ss_pred E-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCC--CcceEEEEECCEEEEEecCCCCCccceEEEEECC
Q 007111 157 Y-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSP--RAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 233 (617)
Q Consensus 157 ~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~--R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~ 233 (617)
. ++. .++.|+.++ .+..||+.+..-............ ..........+..+++++.. ..+.+||+.
T Consensus 254 ~~~~~-~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~v~d~~ 322 (408)
T 4a11_B 254 TSDGL-HLLTVGTDN-----RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG-----STIAVYTVY 322 (408)
T ss_dssp CTTSS-EEEEEETTS-----CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEET-----TEEEEEETT
T ss_pred cCCCC-EEEEecCCC-----eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecC-----CEEEEEECc
Confidence 2 445 667777664 399999987654322111001111 11111111223334444332 358899987
Q ss_pred CCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 234 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 234 ~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
+..-..... . .......+.+.. ++.+++.||.++ .|.+||+.+.+
T Consensus 323 ~~~~~~~~~--~----~~~~v~~~~~s~--~~~~l~s~~~dg----~i~iw~~~~~~ 367 (408)
T 4a11_B 323 SGEQITMLK--G----HYKTVDCCVFQS--NFQELYSGSRDC----NILAWVPSLYE 367 (408)
T ss_dssp TCCEEEEEC--C----CSSCEEEEEEET--TTTEEEEEETTS----CEEEEEECC--
T ss_pred CCcceeeec--c----CCCeEEEEEEcC--CCCEEEEECCCC----eEEEEeCCCCC
Confidence 765433221 0 111233334432 244667787754 57888887755
No 101
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=95.56 E-value=1.4 Score=44.60 Aligned_cols=115 Identities=15% Similarity=0.117 Sum_probs=58.0
Q ss_pred EEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECC-EEEEEeecCCCCCccCeEEEEECCCCcE
Q 007111 58 KVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTW 136 (617)
Q Consensus 58 ~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~-~IYv~GG~~~~~~~~~~v~~yD~~t~~W 136 (617)
..+++|.+.........+|.+|+.+.++..+... ....+ .+.+..-++ .||+.+..... .-.-.+|.++..+...
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p--~~l~~spdg~~l~~~~~~~~~-~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANP--SYLIPSADGKFVYSVNEFSKD-QAAVSAFAFDKEKGTL 89 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCC--CSEEECTTSSEEEEEECCSST-TCEEEEEEEETTTTEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCC--ceEEECCCCCEEEEEEccCCC-CCcEEEEEEeCCCCcE
Confidence 3455677755444445688888899988877632 11111 112222234 56665543211 1122345556666777
Q ss_pred EEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCC
Q 007111 137 LPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET 184 (617)
Q Consensus 137 ~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t 184 (617)
+.+. ..+..........++++++|+.+..+ ..+.+|++.+
T Consensus 90 ~~~~---~~~~~~~~p~~~~~dg~~l~~~~~~~-----~~v~~~~~~~ 129 (361)
T 3scy_A 90 HLLN---TQKTMGADPCYLTTNGKNIVTANYSG-----GSITVFPIGQ 129 (361)
T ss_dssp EEEE---EEECSSSCEEEEEECSSEEEEEETTT-----TEEEEEEBCT
T ss_pred EEee---EeccCCCCcEEEEECCCEEEEEECCC-----CEEEEEEeCC
Confidence 7663 12211112222223777566665332 3588888864
No 102
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=95.56 E-value=2 Score=43.46 Aligned_cols=186 Identities=13% Similarity=0.006 Sum_probs=91.5
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEE-EECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLI-SWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v-~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..+++||+.+.....+.. +.. -++++ .-++++|+... ..+++||+.+.++..+....
T Consensus 71 ~~i~~~d~~~~~~~~~~~-------------~~~-v~~i~~~~dg~l~v~~~--------~gl~~~d~~~g~~~~~~~~~ 128 (326)
T 2ghs_A 71 RELHELHLASGRKTVHAL-------------PFM-GSALAKISDSKQLIASD--------DGLFLRDTATGVLTLHAELE 128 (326)
T ss_dssp TEEEEEETTTTEEEEEEC-------------SSC-EEEEEEEETTEEEEEET--------TEEEEEETTTCCEEEEECSS
T ss_pred CEEEEEECCCCcEEEEEC-------------CCc-ceEEEEeCCCeEEEEEC--------CCEEEEECCCCcEEEEeeCC
Confidence 368888888776554432 111 12333 34678877642 24999999999887765211
Q ss_pred C-CCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCC
Q 007111 93 D-IPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSK 170 (617)
Q Consensus 93 ~-~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~ 170 (617)
. .+..+.....+--++.+|+.............+|+|| +.+...+.. ... .....+.. +++.+|+.....
T Consensus 129 ~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~---~~~~i~~s~dg~~lyv~~~~~- 200 (326)
T 2ghs_A 129 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--DIS---IPNSICFSPDGTTGYFVDTKV- 200 (326)
T ss_dssp TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--EES---SEEEEEECTTSCEEEEEETTT-
T ss_pred CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--CCc---ccCCeEEcCCCCEEEEEECCC-
Confidence 1 1111222222222467776432111111246799999 566655421 111 11133333 454577764332
Q ss_pred CCCCCeEEEEECC--CC-cEE---EeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEe
Q 007111 171 SKTLNDLYSLDFE--TM-IWT---RIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 240 (617)
Q Consensus 171 ~~~~n~v~~yD~~--t~-~W~---~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l 240 (617)
+.|++||.. ++ ... .+.... .....-..++.. ++.+|+..... ..+++||+....-..+
T Consensus 201 ----~~I~~~d~~~~~Gl~~~~~~~~~~~~--~~~~~p~gi~~d~~G~lwva~~~~-----~~v~~~d~~g~~~~~i 266 (326)
T 2ghs_A 201 ----NRLMRVPLDARTGLPTGKAEVFIDST--GIKGGMDGSVCDAEGHIWNARWGE-----GAVDRYDTDGNHIARY 266 (326)
T ss_dssp ----CEEEEEEBCTTTCCBSSCCEEEEECT--TSSSEEEEEEECTTSCEEEEEETT-----TEEEEECTTCCEEEEE
T ss_pred ----CEEEEEEcccccCCcccCceEEEECC--CCCCCCCeeEECCCCCEEEEEeCC-----CEEEEECCCCCEEEEE
Confidence 469999975 44 211 111110 001111223332 56787764211 3588999865444444
No 103
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.94 Score=47.72 Aligned_cols=113 Identities=12% Similarity=0.125 Sum_probs=58.7
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCC--CCcceeEEEEEC---CEEEEEeecCCCCCccCeEEEEE
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP--VARSGHTVVRAS---SVLILFGGEDGKRRKLNDLHMFD 130 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P--~~R~~~s~~~~~---~~IYv~GG~~~~~~~~~~v~~yD 130 (617)
++..+++|+.+ ..++.|+..+........ ..+. ..........-+ +.+++.|+.++ .+.+||
T Consensus 160 ~~~~l~~~~~~------g~v~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~------~i~vwd 226 (450)
T 2vdu_B 160 DDTTVIIADKF------GDVYSIDINSIPEEKFTQ-EPILGHVSMLTDVHLIKDSDGHQFIITSDRDE------HIKISH 226 (450)
T ss_dssp TSSEEEEEETT------SEEEEEETTSCCCSSCCC-CCSEECSSCEEEEEEEECTTSCEEEEEEETTS------CEEEEE
T ss_pred CCCEEEEEeCC------CcEEEEecCCcccccccc-eeeecccCceEEEEEcCCCCCCcEEEEEcCCC------cEEEEE
Confidence 45666666542 358888876654321000 0011 111111222235 77888887653 488899
Q ss_pred CCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEe
Q 007111 131 LKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRI 190 (617)
Q Consensus 131 ~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~ 190 (617)
+.+......-..+ ......+.+.. ++. +++.|+.++ .|.+||+.+++....
T Consensus 227 ~~~~~~~~~~~~~--h~~~v~~~~~s-d~~-~l~s~~~d~-----~v~vwd~~~~~~~~~ 277 (450)
T 2vdu_B 227 YPQCFIVDKWLFG--HKHFVSSICCG-KDY-LLLSAGGDD-----KIFAWDWKTGKNLST 277 (450)
T ss_dssp ESCTTCEEEECCC--CSSCEEEEEEC-STT-EEEEEESSS-----EEEEEETTTCCEEEE
T ss_pred CCCCceeeeeecC--CCCceEEEEEC-CCC-EEEEEeCCC-----eEEEEECCCCcEeee
Confidence 8876644321111 11111122222 566 677777653 599999988775543
No 104
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=95.54 E-value=0.98 Score=45.38 Aligned_cols=202 Identities=13% Similarity=0.120 Sum_probs=98.9
Q ss_pred EEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCCcEEE
Q 007111 60 LLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP 138 (617)
Q Consensus 60 yV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~ 138 (617)
+.+|.+.........+|.+|..+.++..+...... .....++. -++++|+.+.... ...+++||+.+..++.
T Consensus 5 ~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~---~~p~~~a~spdg~l~~~~~~~~----~~~v~~~~~~~g~~~~ 77 (347)
T 3hfq_A 5 ILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAAT---QNPTYLALSAKDCLYSVDKEDD----EGGIAAWQIDGQTAHK 77 (347)
T ss_dssp EEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEEC---SCCCCEEECTTCEEEEEEEETT----EEEEEEEEEETTEEEE
T ss_pred EEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeecc---CCcceEEEccCCeEEEEEecCC----CceEEEEEecCCcEEE
Confidence 34565543334445688899988888765422111 11122222 3567777654322 2568999998888776
Q ss_pred eecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECC-CCcEEEeec---CCCCCCCC----cceEEEEE-
Q 007111 139 LHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFE-TMIWTRIKI---RGFHPSPR----AGCCGVLC- 208 (617)
Q Consensus 139 l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~-t~~W~~~~~---~g~~P~~R----~~ha~v~~- 208 (617)
+... ......-..+++. ++++||+.+..+ +.+.+||+. ++....+.. .+..|.+| .-+.++..
T Consensus 78 ~~~~--~~~~~~p~~~a~spdg~~l~~~~~~~-----~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp 150 (347)
T 3hfq_A 78 LNTV--VAPGTPPAYVAVDEARQLVYSANYHK-----GTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP 150 (347)
T ss_dssp EEEE--EEESCCCSEEEEETTTTEEEEEETTT-----TEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT
T ss_pred eeee--ecCCCCCEEEEECCCCCEEEEEeCCC-----CEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC
Confidence 6320 0001111233333 456566655322 357888874 344444332 11112111 12233333
Q ss_pred CCEEEEEecCCCCCccceEEEEECC-CCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECC
Q 007111 209 GTKWYIAGGGSRKKRHAETLIFDIL-KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 287 (617)
Q Consensus 209 ~~~IyI~GG~s~~~~~~~v~~yDl~-~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~ 287 (617)
++++|+.+... +.+++||+. ......+...... ...+...+.+.. +...+|+.+..+ +.|.+|++.
T Consensus 151 dg~l~v~~~~~-----~~v~~~~~~~~g~~~~~~~~~~~---~g~~p~~~~~sp-dg~~l~v~~~~~----~~v~v~~~~ 217 (347)
T 3hfq_A 151 DNRLAVIDLGS-----DKVYVYNVSDAGQLSEQSVLTME---AGFGPRHLVFSP-DGQYAFLAGELS----SQIASLKYD 217 (347)
T ss_dssp TSCEEEEETTT-----TEEEEEEECTTSCEEEEEEEECC---TTCCEEEEEECT-TSSEEEEEETTT----TEEEEEEEE
T ss_pred CCcEEEEeCCC-----CEEEEEEECCCCcEEEeeeEEcC---CCCCCceEEECC-CCCEEEEEeCCC----CEEEEEEec
Confidence 55677765433 368888887 5555543311100 111222344443 334577765432 356666665
Q ss_pred C
Q 007111 288 K 288 (617)
Q Consensus 288 ~ 288 (617)
.
T Consensus 218 ~ 218 (347)
T 3hfq_A 218 T 218 (347)
T ss_dssp T
T ss_pred C
Confidence 3
No 105
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=95.54 E-value=0.75 Score=45.45 Aligned_cols=185 Identities=8% Similarity=0.047 Sum_probs=84.1
Q ss_pred EEEEEECC--CCcEEEeeccCCCCCCcceeEEEEE-CC-EEEEEeecCCCCCccCeEEEEECCCCc-EEEeecCCCCCCC
Q 007111 74 SVWTFDTE--TECWSVVEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKSLT-WLPLHCTGTGPSP 148 (617)
Q Consensus 74 ~v~~yd~~--t~~W~~~~~~g~~P~~R~~~s~~~~-~~-~IYv~GG~~~~~~~~~~v~~yD~~t~~-W~~l~~~g~~P~~ 148 (617)
.+.+|++. +.++..+.. ++.......++.. ++ .+|+.+ .. ...+.+||+.... ...+.. .+..
T Consensus 61 ~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~~-~~-----~~~i~~~d~~~~~~~~~~~~---~~~~ 128 (343)
T 1ri6_A 61 RVLAYRIAPDDGALTFAAE---SALPGSLTHISTDHQGQFVFVGS-YN-----AGNVSVTRLEDGLPVGVVDV---VEGL 128 (343)
T ss_dssp EEEEEEECTTTCCEEEEEE---EECSSCCSEEEECTTSSEEEEEE-TT-----TTEEEEEEEETTEEEEEEEE---ECCC
T ss_pred eEEEEEecCCCCceeeccc---cccCCCCcEEEEcCCCCEEEEEe-cC-----CCeEEEEECCCCcccccccc---ccCC
Confidence 45565554 777776542 1111122233332 34 455554 22 2457888874222 222211 1111
Q ss_pred CcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCC-CcEEEee--cCCCCCCCCcceEEEEE-C-CEEEEEecCCCCC
Q 007111 149 RSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFET-MIWTRIK--IRGFHPSPRAGCCGVLC-G-TKWYIAGGGSRKK 222 (617)
Q Consensus 149 R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t-~~W~~~~--~~g~~P~~R~~ha~v~~-~-~~IyI~GG~s~~~ 222 (617)
..-+.+++. +++.+|+.+..+ ..+.+||+.+ +.+..+. ... .+....-..++.. + ..+|+.+...
T Consensus 129 ~~~~~~~~s~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~pdg~~l~~~~~~~--- 199 (343)
T 1ri6_A 129 DGCHSANISPDNRTLWVPALKQ-----DRICLFTVSDDGHLVAQDPAEVT-TVEGAGPRHMVFHPNEQYAYCVNELN--- 199 (343)
T ss_dssp TTBCCCEECTTSSEEEEEEGGG-----TEEEEEEECTTSCEEEEEEEEEE-CSTTCCEEEEEECTTSSEEEEEETTT---
T ss_pred CCceEEEECCCCCEEEEecCCC-----CEEEEEEecCCCceeeecccccc-cCCCCCcceEEECCCCCEEEEEeCCC---
Confidence 112233333 455576665333 3599999987 7666433 110 1111111223332 3 3577766433
Q ss_pred ccceEEEEECC--CCcEEEe---ecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECC
Q 007111 223 RHAETLIFDIL--KGEWSVA---ITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 287 (617)
Q Consensus 223 ~~~~v~~yDl~--~~~W~~l---~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~ 287 (617)
..+.+||+. +..+... ...+.. .........+.+. .+...||+.++.+ +.|.+||+.
T Consensus 200 --~~i~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~i~~s-~dg~~l~v~~~~~----~~i~v~d~~ 261 (343)
T 1ri6_A 200 --SSVDVWELKDPHGNIECVQTLDMMPEN-FSDTRWAADIHIT-PDGRHLYACDRTA----SLITVFSVS 261 (343)
T ss_dssp --TEEEEEESSCTTSCCEEEEEEECSCTT-CCSCCCEEEEEEC-TTSSEEEEEETTT----TEEEEEEEC
T ss_pred --CEEEEEEecCCCCcEEEEeeccccCcc-ccccCCccceEEC-CCCCEEEEEecCC----CEEEEEEEc
Confidence 357888884 3444322 211111 0111222234443 3335676665432 378888887
No 106
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=95.47 E-value=2.2 Score=42.16 Aligned_cols=220 Identities=10% Similarity=0.075 Sum_probs=105.2
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEE-eeccCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSV-VEAKGD 93 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~g~ 93 (617)
.+.+||..+..-...-. ....+. ......-++++++.|+.+ ..+.+||+.+..-.. +. .
T Consensus 36 ~v~lWd~~~~~~~~~~~----------~~~~~v-~~~~~~~~~~~l~s~s~d------~~i~vwd~~~~~~~~~~~---~ 95 (304)
T 2ynn_A 36 RVELWNYETQVEVRSIQ----------VTETPV-RAGKFIARKNWIIVGSDD------FRIRVFNYNTGEKVVDFE---A 95 (304)
T ss_dssp EEEEEETTTTEEEEEEE----------CCSSCE-EEEEEEGGGTEEEEEETT------SEEEEEETTTCCEEEEEE---C
T ss_pred cEEEEECCCCceeEEee----------ccCCcE-EEEEEeCCCCEEEEECCC------CEEEEEECCCCcEEEEEe---C
Confidence 58889988775432211 000111 111222355666777653 268888988775322 21 1
Q ss_pred CCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEEC-CcEEEEEccCCCC
Q 007111 94 IPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKS 171 (617)
Q Consensus 94 ~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~-~~~LyV~GG~~~~ 171 (617)
... .-.+++. -++.+++.|+.++ .+.+||..+..=......+. ...-.+++... +..+++.|+.++
T Consensus 96 -h~~-~v~~~~~~~~~~~l~sgs~D~------~v~lWd~~~~~~~~~~~~~h---~~~v~~v~~~p~~~~~l~sgs~D~- 163 (304)
T 2ynn_A 96 -HPD-YIRSIAVHPTKPYVLSGSDDL------TVKLWNWENNWALEQTFEGH---EHFVMCVAFNPKDPSTFASGCLDR- 163 (304)
T ss_dssp -CSS-CEEEEEECSSSSEEEEEETTS------CEEEEEGGGTTEEEEEECCC---CSCEEEEEECTTCTTEEEEEETTS-
T ss_pred -CCC-cEEEEEEcCCCCEEEEECCCC------eEEEEECCCCcchhhhhccc---CCcEEEEEECCCCCCEEEEEeCCC-
Confidence 111 1112222 2456677777654 37888887652111111111 11111222222 333788888774
Q ss_pred CCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE---CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCC
Q 007111 172 KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC---GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSV 248 (617)
Q Consensus 172 ~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~---~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p 248 (617)
.|..||+.+..-...... ...+....+... ++.+++.|+.. ..+.++|+.+..-...- .
T Consensus 164 ----~v~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~s~s~D-----~~i~iWd~~~~~~~~~~--~---- 225 (304)
T 2ynn_A 164 ----TVKVWSLGQSTPNFTLTT---GQERGVNYVDYYPLPDKPYMITASDD-----LTIKIWDYQTKSCVATL--E---- 225 (304)
T ss_dssp ----EEEEEETTCSSCSEEEEC---CCTTCEEEEEECCSTTCCEEEEEETT-----SEEEEEETTTTEEEEEE--E----
T ss_pred ----eEEEEECCCCCccceecc---CCcCcEEEEEEEEcCCCCEEEEEcCC-----CeEEEEeCCCCccceee--C----
Confidence 488899865432111111 111111222221 34566666654 35888998876532211 1
Q ss_pred CCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 249 TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 249 ~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
........+.+.. ...+++.|+.++ .|.+||+.+.+
T Consensus 226 ~h~~~v~~~~~~p--~~~~l~s~s~Dg----~i~iWd~~~~~ 261 (304)
T 2ynn_A 226 GHMSNVSFAVFHP--TLPIIISGSEDG----TLKIWNSSTYK 261 (304)
T ss_dssp CCSSCEEEEEECS--SSSEEEEEETTS----CEEEEETTTCC
T ss_pred CCCCCEEEEEECC--CCCEEEEEcCCC----eEEEEECCCCc
Confidence 0111233344432 234677887764 57888887654
No 107
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=95.46 E-value=0.48 Score=45.42 Aligned_cols=193 Identities=10% Similarity=0.029 Sum_probs=96.9
Q ss_pred ceEEEEECCC-CcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDR-FSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t-~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..+++||+.+ .....+... ............-+++.+++++.... ....+|.++..+.....+..
T Consensus 62 ~~i~~~d~~~~~~~~~~~~~----------~~~~~~~~~~~spdg~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~-- 127 (297)
T 2ojh_A 62 GLLYRLSLAGDPSPEKVDTG----------FATICNNDHGISPDGALYAISDKVEF--GKSAIYLLPSTGGTPRLMTK-- 127 (297)
T ss_dssp TEEEEEESSSCCSCEECCCT----------TCCCBCSCCEECTTSSEEEEEECTTT--SSCEEEEEETTCCCCEECCS--
T ss_pred CeEEEEeCCCCCCceEeccc----------cccccccceEECCCCCEEEEEEeCCC--CcceEEEEECCCCceEEeec--
Confidence 3688999888 766555431 11111111122225555555553221 24579999998877655542
Q ss_pred CCCCCcceeEEEEE-CC-EEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCC
Q 007111 93 DIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSS 169 (617)
Q Consensus 93 ~~P~~R~~~s~~~~-~~-~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~ 169 (617)
... ...++.. ++ .|++.++.++. ..+|.+|..+.....+. ..+ ... ...+.. +++.+++.+..+
T Consensus 128 --~~~--~~~~~~spdg~~l~~~~~~~~~----~~l~~~~~~~~~~~~~~---~~~-~~~-~~~~~s~dg~~l~~~~~~~ 194 (297)
T 2ojh_A 128 --NLP--SYWHGWSPDGKSFTYCGIRDQV----FDIYSMDIDSGVETRLT---HGE-GRN-DGPDYSPDGRWIYFNSSRT 194 (297)
T ss_dssp --SSS--EEEEEECTTSSEEEEEEEETTE----EEEEEEETTTCCEEECC---CSS-SCE-EEEEECTTSSEEEEEECTT
T ss_pred --CCC--ccceEECCCCCEEEEEECCCCc----eEEEEEECCCCcceEcc---cCC-Ccc-ccceECCCCCEEEEEecCC
Confidence 111 2222222 33 55555554432 36888888887777653 111 111 122222 455344444333
Q ss_pred CCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCC------ccceEEEEECCCCcEEEee
Q 007111 170 KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKK------RHAETLIFDILKGEWSVAI 241 (617)
Q Consensus 170 ~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~------~~~~v~~yDl~~~~W~~l~ 241 (617)
+ ...+|.+++.+.....+... ......++.. +++.+++++..... ....++++|+.+.....+.
T Consensus 195 ~---~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 265 (297)
T 2ojh_A 195 G---QMQIWRVRVDGSSVERITDS-----AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF 265 (297)
T ss_dssp S---SCEEEEEETTSSCEEECCCC-----SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred C---CccEEEECCCCCCcEEEecC-----CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence 2 35688888877776655332 1111122222 44444444332111 2256899999887655443
No 108
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=95.44 E-value=1.3 Score=43.83 Aligned_cols=149 Identities=13% Similarity=0.059 Sum_probs=71.0
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeecc
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 91 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 91 (617)
..++++|+.+.+....-.. +.... .+.++.. +..+|+.++. ...+++||+.+.+....-..
T Consensus 21 ~~v~~~d~~~~~~~~~~~~----------~~~~~-~~~~~~s~dg~~~~v~~~~------~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 21 NNLHVVDVASDTVYKSCVM----------PDKFG-PGTAMMAPDNRTAYVLNNH------YGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp TEEEEEETTTTEEEEEEEC----------SSCCS-SCEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEES
T ss_pred CeEEEEECCCCcEEEEEec----------CCCCC-CceeEECCCCCEEEEEeCC------CCcEEEEeCCCCcEEEEEEc
Confidence 4799999998876433221 11001 1233332 3467777643 13699999998875432211
Q ss_pred CCCCC--CcceeEEEEE-CC-EEEEEeec--CCCCCc---cCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcE
Q 007111 92 GDIPV--ARSGHTVVRA-SS-VLILFGGE--DGKRRK---LNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKN 161 (617)
Q Consensus 92 g~~P~--~R~~~s~~~~-~~-~IYv~GG~--~~~~~~---~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~ 161 (617)
+..|. ....+.++.. ++ .+|+.+.. .....+ .+.+++||+.+.+-.+.......| +.-.+++.. +++
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~- 160 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP--RQVYLMRAADDGS- 160 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC--SSCCCEEECTTSC-
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC--CcccceeECCCCc-
Confidence 11110 1111223332 34 55554421 000001 257999999874321110001112 222233333 455
Q ss_pred EEEEccCCCCCCCCeEEEEECCCCcEEEe
Q 007111 162 LLIFGGSSKSKTLNDLYSLDFETMIWTRI 190 (617)
Q Consensus 162 LyV~GG~~~~~~~n~v~~yD~~t~~W~~~ 190 (617)
+|+.++ ++++||+.+++....
T Consensus 161 l~~~~~--------~i~~~d~~~~~~~~~ 181 (349)
T 1jmx_B 161 LYVAGP--------DIYKMDVKTGKYTVA 181 (349)
T ss_dssp EEEESS--------SEEEECTTTCCEEEE
T ss_pred EEEccC--------cEEEEeCCCCceecc
Confidence 777432 388999887765543
No 109
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=95.44 E-value=3.1 Score=46.90 Aligned_cols=236 Identities=9% Similarity=0.001 Sum_probs=118.3
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCC----------CCceEEEEEECCCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSG----------SDRVSVWTFDTETE 83 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~----------~~~~~v~~yd~~t~ 83 (617)
.++++|+.+++....... .....+++.. +++.++++...... .....+|++++.+.
T Consensus 152 ~i~v~d~~tg~~~~~~~~-------------~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~ 218 (710)
T 2xdw_A 152 TIKFMKVDGAKELPDVLE-------------RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTD 218 (710)
T ss_dssp EEEEEETTTTEEEEEEEE-------------EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSC
T ss_pred EEEEEECCCCCCCccccc-------------CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCC
Confidence 788899988887654320 0001122222 44444444332210 22456999999887
Q ss_pred cEE--EeeccCCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCC------C--cEEEeecCCCCCCCCccc
Q 007111 84 CWS--VVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKS------L--TWLPLHCTGTGPSPRSNH 152 (617)
Q Consensus 84 ~W~--~~~~~g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t------~--~W~~l~~~g~~P~~R~~h 152 (617)
... .+.. ............. -+++.++++...... ..+.++++|..+ . .|..+.. . .... .
T Consensus 219 ~~~~~~v~~--~~~~~~~~~~~~~SpDg~~l~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~~~~~l~~--~-~~~~--~ 290 (710)
T 2xdw_A 219 QSEDILCAE--FPDEPKWMGGAELSDDGRYVLLSIREGCD-PVNRLWYCDLQQESNGITGILKWVKLID--N-FEGE--Y 290 (710)
T ss_dssp GGGCEEEEC--CTTCTTCEEEEEECTTSCEEEEEEECSSS-SCCEEEEEEGGGSSSSSCSSCCCEEEEC--S-SSSC--E
T ss_pred cccceEEec--cCCCCeEEEEEEEcCCCCEEEEEEEccCC-CccEEEEEECcccccccCCccceEEeeC--C-CCcE--E
Confidence 632 2221 1111222222222 244444444332221 257899999976 4 5887742 1 1111 1
Q ss_pred EEEEECCcEEEEEccCCCCCCCCeEEEEECCCC---cEEEeecCCCCCCC-CcceEEEEE-CCEEEEEecCCCCCccceE
Q 007111 153 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM---IWTRIKIRGFHPSP-RAGCCGVLC-GTKWYIAGGGSRKKRHAET 227 (617)
Q Consensus 153 ~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~---~W~~~~~~g~~P~~-R~~ha~v~~-~~~IyI~GG~s~~~~~~~v 227 (617)
..+..++..||+.+..+. ....++.+|+.+. .|..+... .. ..-..++.. ++.+++.....+ ...+
T Consensus 291 ~~~s~dg~~l~~~s~~~~--~~~~l~~~d~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~lv~~~~~~g---~~~l 361 (710)
T 2xdw_A 291 DYVTNEGTVFTFKTNRHS--PNYRLINIDFTDPEESKWKVLVPE----HEKDVLEWVACVRSNFLVLCYLHDV---KNTL 361 (710)
T ss_dssp EEEEEETTEEEEEECTTC--TTCEEEEEETTSCCGGGCEEEECC----CSSCEEEEEEEETTTEEEEEEEETT---EEEE
T ss_pred EEEeccCCEEEEEECCCC--CCCEEEEEeCCCCCcccceeccCC----CCCCeEEEEEEEcCCEEEEEEEECC---EEEE
Confidence 233345555777765432 2457999999876 58877553 12 122234445 677777665432 2568
Q ss_pred EEEECCCCc-EEEeecCCCCCCCCCcceEEEEEeecCCcEEEE-EcCCCCCCCCeEEEEECCCCc
Q 007111 228 LIFDILKGE-WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVA-FGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 228 ~~yDl~~~~-W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I-~GG~~~~~~~dV~vyd~~~~~ 290 (617)
+++|+.+.. ...+.. + ......+... .+...|++ +.+. .....++.||+.+.+
T Consensus 362 ~~~~~~~g~~~~~l~~-----~--~~~v~~~~~s-~d~~~l~~~~ss~--~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 362 QLHDLATGALLKIFPL-----E--VGSVVGYSGQ-KKDTEIFYQFTSF--LSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTTCCEEEEECC-----C--SSEEEEEECC-TTCSEEEEEEECS--SCCCEEEEEETTSSS
T ss_pred EEEECCCCCEEEecCC-----C--CceEEEEecC-CCCCEEEEEEeCC--CCCCEEEEEECCCCc
Confidence 999985554 444431 1 1112222222 22234433 3332 234688999987655
No 110
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=95.43 E-value=0.4 Score=49.29 Aligned_cols=150 Identities=10% Similarity=0.008 Sum_probs=77.7
Q ss_pred CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCC
Q 007111 107 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETM 185 (617)
Q Consensus 107 ~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~ 185 (617)
++.+++.|+.++ .+.+||+.+.+-...- .+ ..... .+++.. ++..+++.|+.++. |.+||+.+.
T Consensus 138 dg~~l~sgs~d~------~i~iwd~~~~~~~~~~-~~--h~~~V-~~~~~~~~~~~~l~s~s~D~~-----v~iwd~~~~ 202 (344)
T 4gqb_B 138 SGTQAVSGSKDI------CIKVWDLAQQVVLSSY-RA--HAAQV-TCVAASPHKDSVFLSCSEDNR-----ILLWDTRCP 202 (344)
T ss_dssp TSSEEEEEETTS------CEEEEETTTTEEEEEE-CC--CSSCE-EEEEECSSCTTEEEEEETTSC-----EEEEETTSS
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEE-cC--cCCce-EEEEecCCCCCceeeeccccc-----ccccccccc
Confidence 567777777654 3889999887644321 11 11111 122222 34337788887754 889999877
Q ss_pred cEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcE-EEeecCCCCCCCCCcceEEEEEeec
Q 007111 186 IWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEW-SVAITSPSSSVTSNKGFTLVLVQHK 262 (617)
Q Consensus 186 ~W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W-~~l~~~~~~~p~~r~~~s~v~v~~~ 262 (617)
+....... ........+++.. ++.+++.|+.++ .+.+||+.+.+- ..+. ........+.+..
T Consensus 203 ~~~~~~~~--~~~~~~~~~~~~~p~~~~~l~sg~~dg-----~v~~wd~~~~~~~~~~~-------~h~~~v~~v~fsp- 267 (344)
T 4gqb_B 203 KPASQIGC--SAPGYLPTSLAWHPQQSEVFVFGDENG-----TVSLVDTKSTSCVLSSA-------VHSQCVTGLVFSP- 267 (344)
T ss_dssp SCEEECC------CCCEEEEEECSSCTTEEEEEETTS-----EEEEEESCC--CCEEEE-------CCSSCEEEEEECS-
T ss_pred ceeeeeec--ceeeccceeeeecCCCCcceEEeccCC-----cEEEEECCCCcEEEEEc-------CCCCCEEEEEEcc-
Confidence 64433221 0111111223332 456777777543 478899876532 1111 0111233444432
Q ss_pred CCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 263 EKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 263 ~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
+...+++.|+.++ .|.+||..+.+
T Consensus 268 ~g~~~lasgs~D~----~i~vwd~~~~~ 291 (344)
T 4gqb_B 268 HSVPFLASLSEDC----SLAVLDSSLSE 291 (344)
T ss_dssp SSSCCEEEEETTS----CEEEECTTCCE
T ss_pred CCCeEEEEEeCCC----eEEEEECCCCc
Confidence 2235667777654 47888877654
No 111
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=95.42 E-value=1.6 Score=44.85 Aligned_cols=200 Identities=13% Similarity=0.116 Sum_probs=99.2
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeecc--CCCCCCcceeEEEEE--CC-EEEEEeecCCCCCccCeEEEEE
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK--GDIPVARSGHTVVRA--SS-VLILFGGEDGKRRKLNDLHMFD 130 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~--g~~P~~R~~~s~~~~--~~-~IYv~GG~~~~~~~~~~v~~yD 130 (617)
++.+++.|+.+ ..+.+||..+..+...... ..+........++.+ ++ .+++.|+.++ .+.+||
T Consensus 93 ~~~~l~s~s~d------g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg------~i~iwd 160 (402)
T 2aq5_A 93 NDNVIASGSED------CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN------VILVWD 160 (402)
T ss_dssp CTTEEEEEETT------SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS------CEEEEE
T ss_pred CCCEEEEEeCC------CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC------EEEEEE
Confidence 56777777753 2588888877643110000 000011111122222 23 5777777654 489999
Q ss_pred CCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-
Q 007111 131 LKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC- 208 (617)
Q Consensus 131 ~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~- 208 (617)
+.+.+....-. .......-.+++.. ++. +++.|+.++ .+.+||+.+.........+ ....+. ..++..
T Consensus 161 ~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~-~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~-~~~~~~-~~~~~~~ 230 (402)
T 2aq5_A 161 VGTGAAVLTLG--PDVHPDTIYSVDWSRDGA-LICTSCRDK-----RVRVIEPRKGTVVAEKDRP-HEGTRP-VHAVFVS 230 (402)
T ss_dssp TTTTEEEEEEC--TTTCCSCEEEEEECTTSS-CEEEEETTS-----EEEEEETTTTEEEEEEECS-SCSSSC-CEEEECS
T ss_pred CCCCCccEEEe--cCCCCCceEEEEECCCCC-EEEEEecCC-----cEEEEeCCCCceeeeeccC-CCCCcc-eEEEEcC
Confidence 99887654310 00111111223333 455 677777653 5999999887655433111 111112 233333
Q ss_pred CCEEEEEecCCCCCccceEEEEECCCCcE--EEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEEC
Q 007111 209 GTKWYIAGGGSRKKRHAETLIFDILKGEW--SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 286 (617)
Q Consensus 209 ~~~IyI~GG~s~~~~~~~v~~yDl~~~~W--~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~ 286 (617)
++.+++.|... .....+.+||+.+..- .... .. .......+.+. .+...|++.|+.++ .|.+||+
T Consensus 231 ~~~~l~~g~~~--~~d~~i~iwd~~~~~~~~~~~~-~~-----~~~~v~~~~~s-~~~~~l~~~g~~dg----~i~i~d~ 297 (402)
T 2aq5_A 231 EGKILTTGFSR--MSERQVALWDTKHLEEPLSLQE-LD-----TSSGVLLPFFD-PDTNIVYLCGKGDS----SIRYFEI 297 (402)
T ss_dssp TTEEEEEEECT--TCCEEEEEEETTBCSSCSEEEE-CC-----CCSSCEEEEEE-TTTTEEEEEETTCS----CEEEEEE
T ss_pred CCcEEEEeccC--CCCceEEEEcCccccCCceEEe-cc-----CCCceeEEEEc-CCCCEEEEEEcCCC----eEEEEEe
Confidence 67777776311 1124688999876431 1111 01 11123333343 33456767776543 6888888
Q ss_pred CCCc
Q 007111 287 EKNE 290 (617)
Q Consensus 287 ~~~~ 290 (617)
.+.+
T Consensus 298 ~~~~ 301 (402)
T 2aq5_A 298 TSEA 301 (402)
T ss_dssp CSST
T ss_pred cCCC
Confidence 7655
No 112
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=95.39 E-value=1.1 Score=45.76 Aligned_cols=188 Identities=10% Similarity=0.053 Sum_probs=101.0
Q ss_pred EEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCC-CCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCC
Q 007111 58 KVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP-VARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSL 134 (617)
Q Consensus 58 ~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P-~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~ 134 (617)
.+++.|+.+. .+.+||+.+....... ... ....-.+++.. ++.+++.|+.++ .+.+||+.+.
T Consensus 87 ~~l~s~~~dg------~i~iwd~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~ 151 (383)
T 3ei3_B 87 TTVAVGSKGG------DIILWDYDVQNKTSFI---QGMGPGDAITGMKFNQFNTNQLFVSSIRG------ATTLRDFSGS 151 (383)
T ss_dssp TEEEEEEBTS------CEEEEETTSTTCEEEE---CCCSTTCBEEEEEEETTEEEEEEEEETTT------EEEEEETTSC
T ss_pred CEEEEEcCCC------eEEEEeCCCcccceee---ecCCcCCceeEEEeCCCCCCEEEEEeCCC------EEEEEECCCC
Confidence 5777777632 5888999887765553 111 11122233333 346777776543 5889999987
Q ss_pred cEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE-
Q 007111 135 TWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK- 211 (617)
Q Consensus 135 ~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~- 211 (617)
....+.. .......-.+++.. ++. +++.|+.++ .+..||+.......+... ...-.+++.. ++.
T Consensus 152 ~~~~~~~--~~~~~~~v~~~~~~~~~~-~l~~~~~d~-----~i~i~d~~~~~~~~~~~h-----~~~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 152 VIQVFAK--TDSWDYWYCCVDVSVSRQ-MLATGDSTG-----RLLLLGLDGHEIFKEKLH-----KAKVTHAEFNPRCDW 218 (383)
T ss_dssp EEEEEEC--CCCSSCCEEEEEEETTTT-EEEEEETTS-----EEEEEETTSCEEEEEECS-----SSCEEEEEECSSCTT
T ss_pred ceEEEec--cCCCCCCeEEEEECCCCC-EEEEECCCC-----CEEEEECCCCEEEEeccC-----CCcEEEEEECCCCCC
Confidence 7766641 11111111233333 455 777777663 599999865444443321 1112233333 344
Q ss_pred EEEEecCCCCCccceEEEEECCC----CcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECC
Q 007111 212 WYIAGGGSRKKRHAETLIFDILK----GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 287 (617)
Q Consensus 212 IyI~GG~s~~~~~~~v~~yDl~~----~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~ 287 (617)
+++.|+.. ..+.+||+.+ ........ .......+.+... ++.+++.|+.+ ..|.+||+.
T Consensus 219 ~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~-------~~~~v~~~~~s~~-~~~~l~~~~~d----~~i~iwd~~ 281 (383)
T 3ei3_B 219 LMATSSVD-----ATVKLWDLRNIKDKNSYIAEMP-------HEKPVNAAYFNPT-DSTKLLTTDQR----NEIRVYSSY 281 (383)
T ss_dssp EEEEEETT-----SEEEEEEGGGCCSTTCEEEEEE-------CSSCEEEEEECTT-TSCEEEEEESS----SEEEEEETT
T ss_pred EEEEEeCC-----CEEEEEeCCCCCcccceEEEec-------CCCceEEEEEcCC-CCCEEEEEcCC----CcEEEEECC
Confidence 77777654 3588898876 33322211 1123334444321 24466677764 368999987
Q ss_pred CCc
Q 007111 288 KNE 290 (617)
Q Consensus 288 ~~~ 290 (617)
+.+
T Consensus 282 ~~~ 284 (383)
T 3ei3_B 282 DWS 284 (383)
T ss_dssp BTT
T ss_pred CCc
Confidence 654
No 113
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=95.36 E-value=0.27 Score=50.01 Aligned_cols=140 Identities=11% Similarity=0.118 Sum_probs=64.2
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCc-EEEeeccC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETEC-WSVVEAKG 92 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~g 92 (617)
.+.+||+.+..|..+... ......-.++... ++.+++.|+.+. .+.+||+.+.. |.....
T Consensus 34 ~i~iw~~~~~~~~~~~~~----------~~h~~~v~~~~~s~~~~~l~s~s~d~------~v~vwd~~~~~~~~~~~~-- 95 (377)
T 3dwl_C 34 QVELYEQDGNGWKHARTF----------SDHDKIVTCVDWAPKSNRIVTCSQDR------NAYVYEKRPDGTWKQTLV-- 95 (377)
T ss_dssp CBCEEEEETTEEEECCCB----------CCCSSCEEEEEECTTTCCEEEEETTS------SEEEC------CCCCEEE--
T ss_pred EEEEEEccCCceEEEEEE----------ecCCceEEEEEEeCCCCEEEEEeCCC------eEEEEEcCCCCceeeeeE--
Confidence 578888888888766652 1111111233332 456777777532 47888887766 443331
Q ss_pred CCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCc-EEEeecCCCCCCCCcccEEEEECCcEEEEEccCC
Q 007111 93 DIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLT-WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSS 169 (617)
Q Consensus 93 ~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~-W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~ 169 (617)
+........++.+ ++.+++.|+.++ .+.+||..+.. |..+... ..+....-.+++...+..+++.|+.+
T Consensus 96 -~~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~~d 167 (377)
T 3dwl_C 96 -LLRLNRAATFVRWSPNEDKFAVGSGAR------VISVCYFEQENDWWVSKHL-KRPLRSTILSLDWHPNNVLLAAGCAD 167 (377)
T ss_dssp -CCCCSSCEEEEECCTTSSCCEEEESSS------CEEECCC-----CCCCEEE-CSSCCSCEEEEEECTTSSEEEEEESS
T ss_pred -ecccCCceEEEEECCCCCEEEEEecCC------eEEEEEECCcccceeeeEe-ecccCCCeEEEEEcCCCCEEEEEeCC
Confidence 1111122222222 456777777644 37788877664 3222100 11111112233333333377778776
Q ss_pred CCCCCCeEEEEECCCC
Q 007111 170 KSKTLNDLYSLDFETM 185 (617)
Q Consensus 170 ~~~~~n~v~~yD~~t~ 185 (617)
+ .+..||+.+.
T Consensus 168 ~-----~i~iwd~~~~ 178 (377)
T 3dwl_C 168 R-----KAYVLSAYVR 178 (377)
T ss_dssp S-----CEEEEEECCS
T ss_pred C-----EEEEEEEEec
Confidence 4 3888887543
No 114
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=95.36 E-value=0.98 Score=45.05 Aligned_cols=240 Identities=10% Similarity=0.008 Sum_probs=114.6
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..+++||+.+.++..+... ... .-++++.. ++++|+.+.... .....+++||+.+.....+-.
T Consensus 66 ~~i~~~d~~~~~~~~~~~~-----------~~~-~~~~i~~~~dg~l~v~~~~~~--~~~~~i~~~d~~~~~~~~~~~-- 129 (333)
T 2dg1_A 66 GNIFKINPETKEIKRPFVS-----------HKA-NPAAIKIHKDGRLFVCYLGDF--KSTGGIFAATENGDNLQDIIE-- 129 (333)
T ss_dssp CEEEEECTTTCCEEEEEEC-----------SSS-SEEEEEECTTSCEEEEECTTS--SSCCEEEEECTTSCSCEEEEC--
T ss_pred CEEEEEeCCCCcEEEEeeC-----------CCC-CcceEEECCCCcEEEEeCCCC--CCCceEEEEeCCCCEEEEEEc--
Confidence 3588888888877655320 011 12344443 567887753321 112479999999887653321
Q ss_pred CCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCC
Q 007111 93 DIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSK 170 (617)
Q Consensus 93 ~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~ 170 (617)
..........++.. ++.+|+.............+++||+.+.+...+.. ... .....+.. +++.+|+.....
T Consensus 130 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~---~~~~i~~~~dg~~l~v~~~~~- 203 (333)
T 2dg1_A 130 DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--NIS---VANGIALSTDEKVLWVTETTA- 203 (333)
T ss_dssp SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--EES---SEEEEEECTTSSEEEEEEGGG-
T ss_pred cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec--CCC---cccceEECCCCCEEEEEeCCC-
Confidence 11122222233333 56787754322111124579999998877765531 111 11233333 344577764322
Q ss_pred CCCCCeEEEEECCC--CcEEEeecC--CCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCC
Q 007111 171 SKTLNDLYSLDFET--MIWTRIKIR--GFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPS 245 (617)
Q Consensus 171 ~~~~n~v~~yD~~t--~~W~~~~~~--g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~ 245 (617)
+.+++||+.+ .....+... ...+....-..++.. ++.+|+..... ..+++||+....-..+.. +.
T Consensus 204 ----~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~-----~~v~~~d~~g~~~~~~~~-~~ 273 (333)
T 2dg1_A 204 ----NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ-----GRVLVFNKRGYPIGQILI-PG 273 (333)
T ss_dssp ----TEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT-----TEEEEECTTSCEEEEEEC-TT
T ss_pred ----CeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCC-----CEEEEECCCCCEEEEEEc-CC
Confidence 4689999854 233322100 000111111223332 56788775322 358899986554444431 11
Q ss_pred CCCCCC-cceEEEEEeecCCcEEEEEcCCCCC-CCCeEEEEECC
Q 007111 246 SSVTSN-KGFTLVLVQHKEKDFLVAFGGIKKE-PSNQVEVLSIE 287 (617)
Q Consensus 246 ~~p~~r-~~~s~v~v~~~~~~~L~I~GG~~~~-~~~dV~vyd~~ 287 (617)
. ..+. .....+.+. .+...||+.+..... ....++.+++.
T Consensus 274 ~-~~g~~~~~~~~~~~-~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 274 R-DEGHMLRSTHPQFI-PGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp G-GGTCSCBCCEEEEC-TTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred C-ccccccCcceEEEC-CCCCEEEEEeCccCCCCCceEEEEecc
Confidence 0 0000 012333443 333567765443221 13456777654
No 115
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.36 E-value=4.8 Score=45.36 Aligned_cols=124 Identities=11% Similarity=0.054 Sum_probs=69.5
Q ss_pred EEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEeeccCCC--CC---CcceeEEEEECCEEEEEeecCCCCCccC
Q 007111 52 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDI--PV---ARSGHTVVRASSVLILFGGEDGKRRKLN 124 (617)
Q Consensus 52 ~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~--P~---~R~~~s~~~~~~~IYv~GG~~~~~~~~~ 124 (617)
-++.++.||+.... ..++.+|..+.+ |+.-...... +. .....+.++.++.||+... ..
T Consensus 62 P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------dg 127 (668)
T 1kv9_A 62 PLFHDGVIYTSMSW-------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------DG 127 (668)
T ss_dssp CEEETTEEEEEEGG-------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------TS
T ss_pred CEEECCEEEEECCC-------CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-------CC
Confidence 34679999998653 369999988775 8865421100 00 0011234556888887531 24
Q ss_pred eEEEEECCCCc--EEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCc--EEEee
Q 007111 125 DLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIK 191 (617)
Q Consensus 125 ~v~~yD~~t~~--W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~~ 191 (617)
.++.+|..+.+ |+.-.. ..........+-++.++. +|+..+.........++.||..+++ |+...
T Consensus 128 ~l~alD~~tG~~~W~~~~~-~~~~~~~~~~~P~v~~~~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 128 RLIALDAKTGKAIWSQQTT-DPAKPYSITGAPRVVKGK-VIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp EEEEEETTTCCEEEEEECS-CTTSSCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred EEEEEECCCCCEeeeeccC-CCCCcceecCCCEEECCE-EEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 69999998876 986421 110111112233445665 6553222111234579999998765 87643
No 116
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=95.31 E-value=0.88 Score=47.56 Aligned_cols=148 Identities=8% Similarity=0.032 Sum_probs=78.1
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 134 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~ 134 (617)
++.+++.||.+. .+.+||..+......- ...... -.+++. .++.+++.||.++. +.+||+.+.
T Consensus 119 ~~~~l~s~s~Dg------~i~vwd~~~~~~~~~l---~~h~~~-V~~v~~~~~~~~l~sgs~D~~------i~iwd~~~~ 182 (410)
T 1vyh_C 119 VFSVMVSASEDA------TIKVWDYETGDFERTL---KGHTDS-VQDISFDHSGKLLASCSADMT------IKLWDFQGF 182 (410)
T ss_dssp SSSEEEEEESSS------CEEEEETTTCCCCEEE---CCCSSC-EEEEEECTTSSEEEEEETTSC------CCEEETTSS
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEE---eccCCc-EEEEEEcCCCCEEEEEeCCCe------EEEEeCCCC
Confidence 356777777532 4888888876543221 111111 112222 24677888877654 567888766
Q ss_pred cEEEeecCCCCCCCCccc-EEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE
Q 007111 135 TWLPLHCTGTGPSPRSNH-VAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK 211 (617)
Q Consensus 135 ~W~~l~~~g~~P~~R~~h-~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~ 211 (617)
.-... +......- +++.. ++. .++.|+.++ .+..||+.++.....-.. ....-.++... ++.
T Consensus 183 ~~~~~-----~~~h~~~V~~v~~~p~~~-~l~s~s~D~-----~i~~wd~~~~~~~~~~~~----h~~~v~~~~~~~~g~ 247 (410)
T 1vyh_C 183 ECIRT-----MHGHDHNVSSVSIMPNGD-HIVSASRDK-----TIKMWEVQTGYCVKTFTG----HREWVRMVRPNQDGT 247 (410)
T ss_dssp CEEEC-----CCCCSSCEEEEEECSSSS-EEEEEETTS-----EEEEEETTTCCEEEEEEC----CSSCEEEEEECTTSS
T ss_pred ceeEE-----EcCCCCCEEEEEEeCCCC-EEEEEeCCC-----eEEEEECCCCcEEEEEeC----CCccEEEEEECCCCC
Confidence 54322 11111111 22233 445 677888764 499999988765433221 11111222222 566
Q ss_pred EEEEecCCCCCccceEEEEECCCCcEEE
Q 007111 212 WYIAGGGSRKKRHAETLIFDILKGEWSV 239 (617)
Q Consensus 212 IyI~GG~s~~~~~~~v~~yDl~~~~W~~ 239 (617)
+++.|+..+ .+.+||+.+.....
T Consensus 248 ~l~s~s~D~-----~v~vwd~~~~~~~~ 270 (410)
T 1vyh_C 248 LIASCSNDQ-----TVRVWVVATKECKA 270 (410)
T ss_dssp EEEEEETTS-----CEEEEETTTCCEEE
T ss_pred EEEEEcCCC-----eEEEEECCCCceee
Confidence 777777553 37788887765443
No 117
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=95.25 E-value=2.3 Score=41.02 Aligned_cols=215 Identities=11% Similarity=-0.026 Sum_probs=113.2
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..+.+||+. ..+...... .....-++++.. ++.+|+.... ...+++||+. ..+..+.
T Consensus 36 ~~v~~~d~~-~~~~~~~~~-----------~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~~--- 93 (299)
T 2z2n_A 36 NMISCINLD-GKITEYPLP-----------TPDAKVMCLTISSDGEVWFTENA------ANKIGRITKK-GIIKEYT--- 93 (299)
T ss_dssp TEEEEECTT-CCEEEEECS-----------STTCCEEEEEECTTSCEEEEETT------TTEEEEECTT-SCEEEEE---
T ss_pred CcEEEEcCC-CCeEEecCC-----------cccCceeeEEECCCCCEEEeCCC------CCeEEEECCC-CcEEEEe---
Confidence 358888888 666654420 011112344443 5678887532 1258999986 5565554
Q ss_pred CCC-CCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCC
Q 007111 93 DIP-VARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK 170 (617)
Q Consensus 93 ~~P-~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~ 170 (617)
+| .....+.++.. ++.+|+.... ...+++||+ +.+........ ....-..++...+..+|+.....
T Consensus 94 -~~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~-~g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~~- 161 (299)
T 2z2n_A 94 -LPNPDSAPYGITEGPNGDIWFTEMN------GNRIGRITD-DGKIREYELPN---KGSYPSFITLGSDNALWFTENQN- 161 (299)
T ss_dssp -CSSTTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEECSS---TTCCEEEEEECTTSCEEEEETTT-
T ss_pred -CCCcCCCceeeEECCCCCEEEEecC------CceEEEECC-CCCEEEecCCC---CCCCCceEEEcCCCCEEEEeCCC-
Confidence 22 22233444444 4688876432 246899998 66666553111 11122233333333377754322
Q ss_pred CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCC
Q 007111 171 SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVT 249 (617)
Q Consensus 171 ~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~ 249 (617)
+.+++||+ ++.+..+.... ....-.+++.. ++.+|+..... ..+++||+ +..+..... + .
T Consensus 162 ----~~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~-~g~~~~~~~-~----~ 222 (299)
T 2z2n_A 162 ----NAIGRITE-SGDITEFKIPT---PASGPVGITKGNDDALWFVEIIG-----NKIGRITT-SGEITEFKI-P----T 222 (299)
T ss_dssp ----TEEEEECT-TCCEEEEECSS---TTCCEEEEEECTTSSEEEEETTT-----TEEEEECT-TCCEEEEEC-S----S
T ss_pred ----CEEEEEcC-CCcEEEeeCCC---CCCcceeEEECCCCCEEEEccCC-----ceEEEECC-CCcEEEEEC-C----C
Confidence 45999999 77777653311 11112233333 56788875322 35899999 676665432 1 1
Q ss_pred CCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECC
Q 007111 250 SNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 287 (617)
Q Consensus 250 ~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~ 287 (617)
.......+.+.. ++.||+.... .+.|.+||+.
T Consensus 223 ~~~~~~~i~~~~--~g~l~v~~~~----~~~i~~~d~~ 254 (299)
T 2z2n_A 223 PNARPHAITAGA--GIDLWFTEWG----ANKIGRLTSN 254 (299)
T ss_dssp TTCCEEEEEECS--TTCEEEEETT----TTEEEEEETT
T ss_pred CCCCceeEEECC--CCCEEEeccC----CceEEEECCC
Confidence 112223334432 3457765422 2368888873
No 118
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=95.19 E-value=0.64 Score=47.23 Aligned_cols=191 Identities=9% Similarity=0.067 Sum_probs=97.7
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
++.+++.||.+. .+.+||..+..|....... ........++.+ ++.+++.|+.++. +.+||..+
T Consensus 27 ~g~~las~~~D~------~i~iw~~~~~~~~~~~~~~--~~h~~~v~~~~~sp~g~~l~s~s~D~~------v~iw~~~~ 92 (345)
T 3fm0_A 27 AGTLLASCGGDR------RIRIWGTEGDSWICKSVLS--EGHQRTVRKVAWSPCGNYLASASFDAT------TCIWKKNQ 92 (345)
T ss_dssp TSSCEEEEETTS------CEEEEEEETTEEEEEEEEC--SSCSSCEEEEEECTTSSEEEEEETTSC------EEEEEECC
T ss_pred CCCEEEEEcCCC------eEEEEEcCCCcceeeeeec--cccCCcEEEEEECCCCCEEEEEECCCc------EEEEEccC
Confidence 567777777632 4777787788775433110 111111222222 4677778876553 67788777
Q ss_pred CcEEEeecCCCCCCCCcc-cEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCC-cEEEeecCCCCCCCCcceEEEEE-C
Q 007111 134 LTWLPLHCTGTGPSPRSN-HVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETM-IWTRIKIRGFHPSPRAGCCGVLC-G 209 (617)
Q Consensus 134 ~~W~~l~~~g~~P~~R~~-h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~-~W~~~~~~g~~P~~R~~ha~v~~-~ 209 (617)
..+..+.. +...... .+++.. ++. +++.|+.++. +.+||+.+. .+..+...... ...-.+++.. +
T Consensus 93 ~~~~~~~~---~~~h~~~v~~v~~sp~~~-~l~s~s~D~~-----v~iwd~~~~~~~~~~~~~~~h--~~~v~~~~~~p~ 161 (345)
T 3fm0_A 93 DDFECVTT---LEGHENEVKSVAWAPSGN-LLATCSRDKS-----VWVWEVDEEDEYECVSVLNSH--TQDVKHVVWHPS 161 (345)
T ss_dssp C-EEEEEE---ECCCSSCEEEEEECTTSS-EEEEEETTSC-----EEEEEECTTSCEEEEEEECCC--CSCEEEEEECSS
T ss_pred CCeEEEEE---ccCCCCCceEEEEeCCCC-EEEEEECCCe-----EEEEECCCCCCeEEEEEecCc--CCCeEEEEECCC
Confidence 76654421 1111111 122333 455 7788887653 888888654 33333322111 1111222332 5
Q ss_pred CEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEEC
Q 007111 210 TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 286 (617)
Q Consensus 210 ~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~ 286 (617)
+.+++.|+..+ .+.+||.....|..+..... .......+.+.. ++.+++.|+.++ .|.+|+.
T Consensus 162 ~~~l~s~s~d~-----~i~~w~~~~~~~~~~~~~~~----h~~~v~~l~~sp--~g~~l~s~s~D~----~v~iW~~ 223 (345)
T 3fm0_A 162 QELLASASYDD-----TVKLYREEEDDWVCCATLEG----HESTVWSLAFDP--SGQRLASCSDDR----TVRIWRQ 223 (345)
T ss_dssp SSCEEEEETTS-----CEEEEEEETTEEEEEEEECC----CSSCEEEEEECT--TSSEEEEEETTS----CEEEEEE
T ss_pred CCEEEEEeCCC-----cEEEEEecCCCEEEEEEecC----CCCceEEEEECC--CCCEEEEEeCCC----eEEEecc
Confidence 66777776553 37788888887765432221 111233344432 344677787654 3566654
No 119
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=95.18 E-value=0.18 Score=52.01 Aligned_cols=198 Identities=18% Similarity=0.217 Sum_probs=90.1
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcce-eEEEEE-CCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSG-HTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~-~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
++++++.|+.+.....-..++.|+..+..-...... .......+ .+++.. ++.+ +.|+.++ .+.+||+.+
T Consensus 53 DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~-~~~~~~~~V~~~~~s~d~~~-l~~s~dg------~v~lWd~~~ 124 (357)
T 4g56_B 53 DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT-AGVQTEAGVTDVAWVSEKGI-LVASDSG------AVELWEILE 124 (357)
T ss_dssp SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCS-EEEECSSCEEEEEEETTTEE-EEEETTS------CEEEC----
T ss_pred CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEec-ccCCCCCCEEEEEEcCCCCE-EEEECCC------EEEEeeccc
Confidence 677887777533222224688887665431110000 00001111 122333 3454 4555432 478888876
Q ss_pred CcEEEeecCCCCCCCCccc-----EEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE
Q 007111 134 LTWLPLHCTGTGPSPRSNH-----VAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL 207 (617)
Q Consensus 134 ~~W~~l~~~g~~P~~R~~h-----~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~ 207 (617)
.+-..+ ......+| +++.. +++ .++.|+.++. |.+||+.++.....-.. ... .-.+++.
T Consensus 125 ~~~~~~-----~~~~~~~h~~~V~~v~~spdg~-~l~sgs~dg~-----v~iwd~~~~~~~~~~~~---h~~-~v~~v~~ 189 (357)
T 4g56_B 125 KESLLV-----NKFAKYEHDDIVKTLSVFSDGT-QAVSGGKDFS-----VKVWDLSQKAVLKSYNA---HSS-EVNCVAA 189 (357)
T ss_dssp ----CC-----CCEEECCCSSCEEEEEECSSSS-EEEEEETTSC-----EEEEETTTTEEEEEECC---CSS-CEEEEEE
T ss_pred cceeEE-----EeeccCCCCCCEEEEEECCCCC-EEEEEeCCCe-----EEEEECCCCcEEEEEcC---CCC-CEEEEEE
Confidence 543221 11111111 22233 455 7778887654 89999988765543221 111 1122333
Q ss_pred E--CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEE
Q 007111 208 C--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLS 285 (617)
Q Consensus 208 ~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd 285 (617)
. ++.+++.||..+ .+.+||+.+....... ..........++.+. .+.+.+++.|+.++ .|.+||
T Consensus 190 s~~~~~~~~s~~~dg-----~v~~wd~~~~~~~~~~----~~~~~~~~v~~v~~s-p~~~~~la~g~~d~----~i~~wd 255 (357)
T 4g56_B 190 CPGKDTIFLSCGEDG-----RILLWDTRKPKPATRI----DFCASDTIPTSVTWH-PEKDDTFACGDETG----NVSLVN 255 (357)
T ss_dssp CTTCSSCEEEEETTS-----CEEECCTTSSSCBCBC----CCTTCCSCEEEEEEC-TTSTTEEEEEESSS----CEEEEE
T ss_pred ccCCCceeeeeccCC-----ceEEEECCCCceeeee----eeccccccccchhhh-hcccceEEEeeccc----ceeEEE
Confidence 2 345777777553 3778888765422211 111111223333443 23355777887653 588999
Q ss_pred CCCCc
Q 007111 286 IEKNE 290 (617)
Q Consensus 286 ~~~~~ 290 (617)
+.+.+
T Consensus 256 ~~~~~ 260 (357)
T 4g56_B 256 IKNPD 260 (357)
T ss_dssp SSCGG
T ss_pred CCCCc
Confidence 87654
No 120
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=95.14 E-value=2.8 Score=41.54 Aligned_cols=193 Identities=10% Similarity=0.017 Sum_probs=90.8
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEE---ECCEEEEEeecCCCCCccCeEEEEECC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR---ASSVLILFGGEDGKRRKLNDLHMFDLK 132 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~---~~~~IYv~GG~~~~~~~~~~v~~yD~~ 132 (617)
++..++.|+.+ ..+.+||+.+........ ... .-.++.. .++.+++.|+.++ .+.+||+.
T Consensus 97 ~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~---~~~--~v~~~~~~~~~~~~~l~~~~~dg------~i~vwd~~ 159 (368)
T 3mmy_A 97 DGSKVFTASCD------KTAKMWDLSSNQAIQIAQ---HDA--PVKTIHWIKAPNYSCVMTGSWDK------TLKFWDTR 159 (368)
T ss_dssp TSSEEEEEETT------SEEEEEETTTTEEEEEEE---CSS--CEEEEEEEECSSCEEEEEEETTS------EEEEECSS
T ss_pred CCCEEEEEcCC------CcEEEEEcCCCCceeecc---ccC--ceEEEEEEeCCCCCEEEEccCCC------cEEEEECC
Confidence 55666676653 268899998887655431 111 1122222 2467777777643 48899987
Q ss_pred CCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECC-
Q 007111 133 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGT- 210 (617)
Q Consensus 133 t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~-~~~- 210 (617)
+.+-...- ..+. .. .+...... .+++++.++ .+..||.....-....... +.......... .+.
T Consensus 160 ~~~~~~~~---~~~~--~~-~~~~~~~~-~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 225 (368)
T 3mmy_A 160 SSNPMMVL---QLPE--RC-YCADVIYP-MAVVATAER-----GLIVYQLENQPSEFRRIES--PLKHQHRCVAIFKDKQ 225 (368)
T ss_dssp CSSCSEEE---ECSS--CE-EEEEEETT-EEEEEEGGG-----CEEEEECSSSCEEEEECCC--SCSSCEEEEEEEECTT
T ss_pred CCcEEEEE---ecCC--Cc-eEEEecCC-eeEEEeCCC-----cEEEEEeccccchhhhccc--cccCCCceEEEcccCC
Confidence 76522211 1111 11 22223334 334444332 4788888655432222211 11121222222 222
Q ss_pred ---EEEEEecCCCCCccceEEEEECCCCcE----EEeecCC-CCC----CCCCcceEEEEEeecCCcEEEEEcCCCCCCC
Q 007111 211 ---KWYIAGGGSRKKRHAETLIFDILKGEW----SVAITSP-SSS----VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPS 278 (617)
Q Consensus 211 ---~IyI~GG~s~~~~~~~v~~yDl~~~~W----~~l~~~~-~~~----p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~ 278 (617)
..++.|+.. ..+.+||+....- ..+.... ... +........+.+.. ++.+++.||.++
T Consensus 226 ~~~~~~~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~s~~~dg--- 295 (368)
T 3mmy_A 226 NKPTGFALGSIE-----GRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP--VHGTLATVGSDG--- 295 (368)
T ss_dssp SCEEEEEEEETT-----SEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT--TTCCEEEEETTS---
T ss_pred CCCCeEEEecCC-----CcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEec--CCCEEEEEccCC---
Confidence 336666654 3477888765421 1111000 000 00000233334432 344677787654
Q ss_pred CeEEEEECCCCc
Q 007111 279 NQVEVLSIEKNE 290 (617)
Q Consensus 279 ~dV~vyd~~~~~ 290 (617)
.|.+||+.+.+
T Consensus 296 -~i~iwd~~~~~ 306 (368)
T 3mmy_A 296 -RFSFWDKDART 306 (368)
T ss_dssp -CEEEEETTTTE
T ss_pred -eEEEEECCCCc
Confidence 58899988764
No 121
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=95.14 E-value=1.4 Score=43.80 Aligned_cols=196 Identities=10% Similarity=0.028 Sum_probs=95.7
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
++.+++.|+.+ ..+.+||+.+..-...- ........++.+ ++.+++.|+.+ ..+.+||+.+
T Consensus 43 ~~~~l~~~~~d------g~i~vwd~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~s~~~d------g~i~iwd~~~ 105 (369)
T 3zwl_B 43 EGDLLFSCSKD------SSASVWYSLNGERLGTL-----DGHTGTIWSIDVDCFTKYCVTGSAD------YSIKLWDVSN 105 (369)
T ss_dssp TSCEEEEEESS------SCEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSEEEEEETT------TEEEEEETTT
T ss_pred CCCEEEEEeCC------CEEEEEeCCCchhhhhh-----hhcCCcEEEEEEcCCCCEEEEEeCC------CeEEEEECCC
Confidence 45666677653 25888898877643322 111112222222 45666777654 3589999988
Q ss_pred CcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCc----EEEeecCCC----CCCCC-cce
Q 007111 134 LTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMI----WTRIKIRGF----HPSPR-AGC 203 (617)
Q Consensus 134 ~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~----W~~~~~~g~----~P~~R-~~h 203 (617)
.+....-. ....-.+++.. ++. .++.|+.+.......+..||+.+.. +........ ..... ...
T Consensus 106 ~~~~~~~~-----~~~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (369)
T 3zwl_B 106 GQCVATWK-----SPVPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT 179 (369)
T ss_dssp CCEEEEEE-----CSSCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred CcEEEEee-----cCCCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence 77554421 11111233333 344 5555555422233468888775432 221111000 00110 122
Q ss_pred EEEEE-CCEEEEEecCCCCCccceEEEEECCC-CcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeE
Q 007111 204 CGVLC-GTKWYIAGGGSRKKRHAETLIFDILK-GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQV 281 (617)
Q Consensus 204 a~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~-~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV 281 (617)
+++.. ++..+++|+.. ..+.+||+.+ ......... .......+.+.. ++.+++.|+.++ .|
T Consensus 180 ~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~------~~~~v~~~~~~~--~~~~l~~~~~d~----~i 242 (369)
T 3zwl_B 180 VAGWSTKGKYIIAGHKD-----GKISKYDVSNNYEYVDSIDL------HEKSISDMQFSP--DLTYFITSSRDT----NS 242 (369)
T ss_dssp EEEECGGGCEEEEEETT-----SEEEEEETTTTTEEEEEEEC------CSSCEEEEEECT--TSSEEEEEETTS----EE
T ss_pred EEEEcCCCCEEEEEcCC-----CEEEEEECCCCcEeEEEEec------CCCceeEEEECC--CCCEEEEecCCc----eE
Confidence 22222 55666776654 3588999987 332222110 112233334432 244566676543 68
Q ss_pred EEEECCCCcc
Q 007111 282 EVLSIEKNES 291 (617)
Q Consensus 282 ~vyd~~~~~W 291 (617)
.+||+.+.+.
T Consensus 243 ~v~d~~~~~~ 252 (369)
T 3zwl_B 243 FLVDVSTLQV 252 (369)
T ss_dssp EEEETTTCCE
T ss_pred EEEECCCCce
Confidence 8999887653
No 122
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=95.10 E-value=0.46 Score=53.51 Aligned_cols=105 Identities=6% Similarity=-0.074 Sum_probs=51.1
Q ss_pred eEEEEECCC-CcEEEeecCCCCCCCCc-ceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcc
Q 007111 176 DLYSLDFET-MIWTRIKIRGFHPSPRA-GCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKG 253 (617)
Q Consensus 176 ~v~~yD~~t-~~W~~~~~~g~~P~~R~-~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~ 253 (617)
.++++|+.+ +....+.... +.... .......+..|++... ........++++|+.+.....+.......... .
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~pDg~~l~~~~~-~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~--~ 338 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGK--EQDIYLARVNWRDPQHLSFQRQ-SRDQKKLDLVEVTLASNQQRVLAHETSPTWVP--L 338 (741)
T ss_dssp EEEEECSSTTCCCEEECCCS--CSSEEEEEEEEEETTEEEEEEE-ETTSSEEEEEEEETTTCCEEEEEEEECSSCCC--C
T ss_pred EEEEEECCCCCceEEecCCC--CcceEEEEEEeCCCCEEEEEEe-cccCCeEEEEEEECCCCceEEEEEcCCCCcCC--c
Confidence 789999988 7755543210 11111 1111223444554433 22233467999999988876654211110000 0
Q ss_pred eEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 254 FTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 254 ~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
...+.+..+ +.+++.++.++ ...+|.+|....
T Consensus 339 ~~~~~~spd--g~~~~~~~~~g--~~~l~~~~~~~~ 370 (741)
T 2ecf_A 339 HNSLRFLDD--GSILWSSERTG--FQHLYRIDSKGK 370 (741)
T ss_dssp CSCCEECTT--SCEEEEECTTS--SCEEEEECSSSC
T ss_pred CCceEECCC--CeEEEEecCCC--ccEEEEEcCCCC
Confidence 112233333 23555665443 357888886544
No 123
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=95.09 E-value=3.4 Score=42.02 Aligned_cols=148 Identities=14% Similarity=0.092 Sum_probs=78.9
Q ss_pred CEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE---CCcEEEEEccCCCCCCCCeEEEEECCC
Q 007111 108 SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY---DDKNLLIFGGSSKSKTLNDLYSLDFET 184 (617)
Q Consensus 108 ~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~---~~~~LyV~GG~~~~~~~n~v~~yD~~t 184 (617)
+..++.|+.+ ..+.+||+.+.+....- .+. ... -.+.... ++. +++.|+.++. +..||+.+
T Consensus 166 ~~~l~t~s~D------~~v~lwd~~~~~~~~~~-~~h--~~~-v~~~~~~~~~~g~-~l~sgs~Dg~-----v~~wd~~~ 229 (354)
T 2pbi_B 166 DMQILTASGD------GTCALWDVESGQLLQSF-HGH--GAD-VLCLDLAPSETGN-TFVSGGCDKK-----AMVWDMRS 229 (354)
T ss_dssp SSEEEEEETT------SEEEEEETTTCCEEEEE-ECC--SSC-EEEEEECCCSSCC-EEEEEETTSC-----EEEEETTT
T ss_pred CCEEEEEeCC------CcEEEEeCCCCeEEEEE-cCC--CCC-eEEEEEEeCCCCC-EEEEEeCCCe-----EEEEECCC
Confidence 4455566543 35889999887654321 011 111 0111221 235 7888887754 99999988
Q ss_pred CcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecC
Q 007111 185 MIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKE 263 (617)
Q Consensus 185 ~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~ 263 (617)
+.....-.. ....-.+++.. ++..++.|+..+ .+.+||+....-...... .........+.+..
T Consensus 230 ~~~~~~~~~----h~~~v~~v~~~p~~~~l~s~s~D~-----~v~lwd~~~~~~~~~~~~----~~~~~~~~~~~~s~-- 294 (354)
T 2pbi_B 230 GQCVQAFET----HESDVNSVRYYPSGDAFASGSDDA-----TCRLYDLRADREVAIYSK----ESIIFGASSVDFSL-- 294 (354)
T ss_dssp CCEEEEECC----CSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEECC----TTCCSCEEEEEECT--
T ss_pred CcEEEEecC----CCCCeEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEcC----CCcccceeEEEEeC--
Confidence 876543221 11111233333 566777777553 488999887653332211 11122334444443
Q ss_pred CcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 264 KDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 264 ~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.+.+++.|+.++ .|.+||+.+.+
T Consensus 295 ~g~~l~~g~~d~----~i~vwd~~~~~ 317 (354)
T 2pbi_B 295 SGRLLFAGYNDY----TINVWDVLKGS 317 (354)
T ss_dssp TSSEEEEEETTS----CEEEEETTTCS
T ss_pred CCCEEEEEECCC----cEEEEECCCCc
Confidence 344667777543 58889986654
No 124
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=95.08 E-value=2.1 Score=48.30 Aligned_cols=211 Identities=13% Similarity=0.075 Sum_probs=109.1
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCC----------CccC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKR----------RKLN 124 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~----------~~~~ 124 (617)
+++.++|+... .+.....++++|+.++....... +.... ...+.. +++.++++..+... ....
T Consensus 135 Dg~~la~~~~~-~G~~~~~i~v~d~~tg~~~~~~~----~~~~~-~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~ 208 (710)
T 2xdw_A 135 DGEYFAYGLSA-SGSDWVTIKFMKVDGAKELPDVL----ERVKF-SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQ 208 (710)
T ss_dssp TSSEEEEEEEE-TTCSCEEEEEEETTTTEEEEEEE----EEECS-CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCC
T ss_pred CCCEEEEEEcC-CCCceEEEEEEECCCCCCCcccc----cCccc-ceEEEEeCCCEEEEEEECCccccccccccccCCCC
Confidence 56655555331 22333589999999998766431 11111 122222 44444444433220 2346
Q ss_pred eEEEEECCCCcEE--EeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCC------C--cEEEeecC
Q 007111 125 DLHMFDLKSLTWL--PLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFET------M--IWTRIKIR 193 (617)
Q Consensus 125 ~v~~yD~~t~~W~--~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t------~--~W~~~~~~ 193 (617)
.++++++.+.... .+- ... ..+......... ++++|++..... ....++++.+|+.+ . .|..+...
T Consensus 209 ~v~~~~l~t~~~~~~~v~-~~~-~~~~~~~~~~~SpDg~~l~~~~~~~-~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~ 285 (710)
T 2xdw_A 209 KLYYHVLGTDQSEDILCA-EFP-DEPKWMGGAELSDDGRYVLLSIREG-CDPVNRLWYCDLQQESNGITGILKWVKLIDN 285 (710)
T ss_dssp EEEEEETTSCGGGCEEEE-CCT-TCTTCEEEEEECTTSCEEEEEEECS-SSSCCEEEEEEGGGSSSSSCSSCCCEEEECS
T ss_pred EEEEEECCCCcccceEEe-ccC-CCCeEEEEEEEcCCCCEEEEEEEcc-CCCccEEEEEECcccccccCCccceEEeeCC
Confidence 6999999887632 221 111 112222233333 455454443322 22257899999976 4 57777542
Q ss_pred CCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCC---cEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEE
Q 007111 194 GFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG---EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAF 270 (617)
Q Consensus 194 g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~---~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~ 270 (617)
.... .......++.+|+.+... .....++.+|+.+. .|..+.... .......+.+. +++.+++.
T Consensus 286 ---~~~~-~~~~s~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~~~~-----~~~~~~~~~~~--~~~~lv~~ 352 (710)
T 2xdw_A 286 ---FEGE-YDYVTNEGTVFTFKTNRH--SPNYRLINIDFTDPEESKWKVLVPEH-----EKDVLEWVACV--RSNFLVLC 352 (710)
T ss_dssp ---SSSC-EEEEEEETTEEEEEECTT--CTTCEEEEEETTSCCGGGCEEEECCC-----SSCEEEEEEEE--TTTEEEEE
T ss_pred ---CCcE-EEEEeccCCEEEEEECCC--CCCCEEEEEeCCCCCcccceeccCCC-----CCCeEEEEEEE--cCCEEEEE
Confidence 1111 222333478888887543 22467999999875 588775211 11112222222 24667666
Q ss_pred cCCCCCCCCeEEEEECCCCc
Q 007111 271 GGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 271 GG~~~~~~~dV~vyd~~~~~ 290 (617)
...++ ...|+++++.+.+
T Consensus 353 ~~~~g--~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 353 YLHDV--KNTLQLHDLATGA 370 (710)
T ss_dssp EEETT--EEEEEEEETTTCC
T ss_pred EEECC--EEEEEEEECCCCC
Confidence 55432 3478899985443
No 125
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=95.08 E-value=0.9 Score=46.29 Aligned_cols=177 Identities=10% Similarity=-0.024 Sum_probs=92.1
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
.+.+||+.+......-. .......-.+++.. ++.+++.|+.+ ..+.+||+.+.....+....
T Consensus 97 ~i~iwd~~~~~~~~~~~----------~~~h~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~ 160 (383)
T 3ei3_B 97 DIILWDYDVQNKTSFIQ----------GMGPGDAITGMKFNQFNTNQLFVSSIR------GATTLRDFSGSVIQVFAKTD 160 (383)
T ss_dssp CEEEEETTSTTCEEEEC----------CCSTTCBEEEEEEETTEEEEEEEEETT------TEEEEEETTSCEEEEEECCC
T ss_pred eEEEEeCCCcccceeee----------cCCcCCceeEEEeCCCCCCEEEEEeCC------CEEEEEECCCCceEEEeccC
Confidence 58899998777654432 00011112333333 34677777653 26888999887776665211
Q ss_pred CCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCc-EEEEEccCCC
Q 007111 93 DIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDK-NLLIFGGSSK 170 (617)
Q Consensus 93 ~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~-~LyV~GG~~~ 170 (617)
.....-.+++. -++.+++.|+.+ ..+.+||+.......+. + .. ..-.+++...+. .+++.|+.++
T Consensus 161 --~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~--~--h~-~~v~~~~~~~~~~~~l~s~~~d~ 227 (383)
T 3ei3_B 161 --SWDYWYCCVDVSVSRQMLATGDST------GRLLLLGLDGHEIFKEK--L--HK-AKVTHAEFNPRCDWLMATSSVDA 227 (383)
T ss_dssp --CSSCCEEEEEEETTTTEEEEEETT------SEEEEEETTSCEEEEEE--C--SS-SCEEEEEECSSCTTEEEEEETTS
T ss_pred --CCCCCeEEEEECCCCCEEEEECCC------CCEEEEECCCCEEEEec--c--CC-CcEEEEEECCCCCCEEEEEeCCC
Confidence 11111122222 245667777654 35899998655444442 1 11 111223333333 2677777764
Q ss_pred CCCCCeEEEEECCC----CcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCC
Q 007111 171 SKTLNDLYSLDFET----MIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKG 235 (617)
Q Consensus 171 ~~~~n~v~~yD~~t----~~W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~ 235 (617)
.+..||+.+ ......... ...-.+++.. ++.+++.|+.. ..+.+||+.+.
T Consensus 228 -----~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~~l~~~~~d-----~~i~iwd~~~~ 283 (383)
T 3ei3_B 228 -----TVKLWDLRNIKDKNSYIAEMPH-----EKPVNAAYFNPTDSTKLLTTDQR-----NEIRVYSSYDW 283 (383)
T ss_dssp -----EEEEEEGGGCCSTTCEEEEEEC-----SSCEEEEEECTTTSCEEEEEESS-----SEEEEEETTBT
T ss_pred -----EEEEEeCCCCCcccceEEEecC-----CCceEEEEEcCCCCCEEEEEcCC-----CcEEEEECCCC
Confidence 489999876 444332221 1112233332 45666777654 35888888754
No 126
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=95.06 E-value=3 Score=42.22 Aligned_cols=199 Identities=11% Similarity=-0.021 Sum_probs=96.2
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDI 94 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~ 94 (617)
.++.+|+.+.....+... +....... ...-+++.++++... ..++++|+.+..-..+. ..
T Consensus 61 ~l~~~d~~~g~~~~lt~~----------~~~~~~~~-~~spdg~~l~~~~~~------~~l~~~d~~~g~~~~~~---~~ 120 (388)
T 3pe7_A 61 NYYLLDLNTQVATQLTEG----------RGDNTFGG-FLSPDDDALFYVKDG------RNLMRVDLATLEENVVY---QV 120 (388)
T ss_dssp EEEEEETTTCEEEECCCS----------SCBCSSSC-EECTTSSEEEEEETT------TEEEEEETTTCCEEEEE---EC
T ss_pred eEEEEeCCCCceEEeeeC----------CCCCccce-EEcCCCCEEEEEeCC------CeEEEEECCCCcceeee---ec
Confidence 588999988887776641 11111111 222244433343321 37999999988766554 23
Q ss_pred CCCcceeEEEE--ECCEEEE-EeecCC---------------CCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEE
Q 007111 95 PVARSGHTVVR--ASSVLIL-FGGEDG---------------KRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL 156 (617)
Q Consensus 95 P~~R~~~s~~~--~~~~IYv-~GG~~~---------------~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~ 156 (617)
|.......... .++.+++ +--... .......++++|+.+.+-..+... .....+....
T Consensus 121 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~----~~~~~~~~~s 196 (388)
T 3pe7_A 121 PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE----NQWLGHPIYR 196 (388)
T ss_dssp CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE----SSCEEEEEEE
T ss_pred hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC----CccccccEEC
Confidence 33322222222 2333332 110000 011236799999999887666311 1122223333
Q ss_pred E-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE-EEEEecCCCCCccceEEEEECC
Q 007111 157 Y-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK-WYIAGGGSRKKRHAETLIFDIL 233 (617)
Q Consensus 157 ~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~-IyI~GG~s~~~~~~~v~~yDl~ 233 (617)
- +++.|+.............++.+|+.+.....+... .........+.. +++ |+.+.... ......++++|+.
T Consensus 197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~---~~~~~~~~~~~spdg~~l~~~~~~~-~~~~~~l~~~d~~ 272 (388)
T 3pe7_A 197 PYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTH---AEGESCTHEFWVPDGSALVYVSYLK-GSPDRFIYSADPE 272 (388)
T ss_dssp TTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCC---CTTEEEEEEEECTTSSCEEEEEEET-TCCCEEEEEECTT
T ss_pred CCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeC---CCCcccccceECCCCCEEEEEecCC-CCCcceEEEEecC
Confidence 2 344333322211122345799999987776655432 111111112222 444 54443322 1112359999999
Q ss_pred CCcEEEee
Q 007111 234 KGEWSVAI 241 (617)
Q Consensus 234 ~~~W~~l~ 241 (617)
+.....+.
T Consensus 273 ~g~~~~l~ 280 (388)
T 3pe7_A 273 TLENRQLT 280 (388)
T ss_dssp TCCEEEEE
T ss_pred CCceEEEE
Confidence 88766654
No 127
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.04 E-value=0.018 Score=69.06 Aligned_cols=114 Identities=23% Similarity=0.262 Sum_probs=55.5
Q ss_pred HhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHH
Q 007111 481 KNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVA 560 (617)
Q Consensus 481 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~ 560 (617)
.+..||.+|.+....+++.|+.........++++++ ...|++.||+.++.+|.+++|.+++-|-| ..||.|++
T Consensus 922 ~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~---~~~e~~~L~~~l~~le~~~~e~~~~~~~v----~~L~~e~~ 994 (1080)
T 2dfs_A 922 LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEIT---YSTETEKLRSDVERLRMSEEEAKNATNRV----LSLQEEIA 994 (1080)
T ss_dssp -----------------------------CHHHHHH---HHHHHHHHHHTHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 344555555555554444444433333222333322 34678889888999999888888776554 46888888
Q ss_pred HHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhh
Q 007111 561 FLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSL 604 (617)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (617)
-|+.-++.++||+......+.-... .||-.|.+|++-.+.|
T Consensus 995 ~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L 1035 (1080)
T 2dfs_A 995 KLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLL 1035 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 8998888888888877544322221 4555555555444433
No 128
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=94.97 E-value=1 Score=45.99 Aligned_cols=199 Identities=16% Similarity=0.093 Sum_probs=95.4
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCC----C-cEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEE
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTET----E-CWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHM 128 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t----~-~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~ 128 (617)
++.+++.|+.+ ..+.+||+.+ . .-..+. . .. ..-.+++.. ++.+++.|+.++ .+.+
T Consensus 78 ~~~~l~~~~~d------g~v~vw~~~~~~~~~~~~~~~~---~-h~-~~v~~~~~~~~~~~~l~s~~~dg------~v~i 140 (416)
T 2pm9_A 78 NNKIIAGALDN------GSLELYSTNEANNAINSMARFS---N-HS-SSVKTVKFNAKQDNVLASGGNNG------EIFI 140 (416)
T ss_dssp SSSCEEEEESS------SCEEEECCSSTTSCCCEEEECC---C-SS-SCCCEEEECSSSTTBEEEECSSS------CEEB
T ss_pred CCCeEEEEccC------CeEEEeecccccccccchhhcc---C-Cc-cceEEEEEcCCCCCEEEEEcCCC------eEEE
Confidence 55666676652 2477788776 1 222221 1 11 111222222 256777776543 4788
Q ss_pred EECCCCc------EEEeecCCCCC-CCCcccEEEEECC-cEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCC--
Q 007111 129 FDLKSLT------WLPLHCTGTGP-SPRSNHVAALYDD-KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPS-- 198 (617)
Q Consensus 129 yD~~t~~------W~~l~~~g~~P-~~R~~h~a~~~~~-~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~-- 198 (617)
||+.+.. -... . .... ....-.+++...+ ..+++.|+.++ .+..||+.+..............
T Consensus 141 wd~~~~~~~~~~~~~~~-~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~ 213 (416)
T 2pm9_A 141 WDMNKCTESPSNYTPLT-P-GQSMSSVDEVISLAWNQSLAHVFASAGSSN-----FASIWDLKAKKEVIHLSYTSPNSGI 213 (416)
T ss_dssp CBTTTTSSCTTTCCCBC-C-CCSCCSSCCCCEEEECSSCTTEEEEESSSS-----CEEEEETTTTEEEEEECCCCCSSCC
T ss_pred EECCCCccccccccccc-c-ccccCCCCCeeEEEeCCCCCcEEEEEcCCC-----CEEEEECCCCCcceEEecccccccc
Confidence 8887764 1111 0 0111 1111123333332 33788887764 39999998876654433210000
Q ss_pred CCcceEEEEE-C-CEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCC-CCCcceEEEEEeecCCcEEEEEcCCCC
Q 007111 199 PRAGCCGVLC-G-TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSV-TSNKGFTLVLVQHKEKDFLVAFGGIKK 275 (617)
Q Consensus 199 ~R~~ha~v~~-~-~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p-~~r~~~s~v~v~~~~~~~L~I~GG~~~ 275 (617)
...-.+++.. + ..+++.|+..+. ...+.+||+.+..-. +. ... ........+.+... ++.+++.|+.++
T Consensus 214 ~~~v~~~~~~~~~~~~l~~~~~d~~--~~~i~~~d~~~~~~~-~~----~~~~~~~~~v~~~~~s~~-~~~~l~s~~~dg 285 (416)
T 2pm9_A 214 KQQLSVVEWHPKNSTRVATATGSDN--DPSILIWDLRNANTP-LQ----TLNQGHQKGILSLDWCHQ-DEHLLLSSGRDN 285 (416)
T ss_dssp CCCEEEEEECSSCTTEEEEEECCSS--SCCCCEEETTSTTSC-SB----CCCSCCSSCEEEEEECSS-CSSCEEEEESSS
T ss_pred CCceEEEEECCCCCCEEEEEECCCC--CceEEEEeCCCCCCC-cE----EeecCccCceeEEEeCCC-CCCeEEEEeCCC
Confidence 1222233333 2 357777765431 124778888764210 00 001 11122334444321 245667777653
Q ss_pred CCCCeEEEEECCCCc
Q 007111 276 EPSNQVEVLSIEKNE 290 (617)
Q Consensus 276 ~~~~dV~vyd~~~~~ 290 (617)
.|.+||+.+.+
T Consensus 286 ----~v~~wd~~~~~ 296 (416)
T 2pm9_A 286 ----TVLLWNPESAE 296 (416)
T ss_dssp ----EEEEECSSSCC
T ss_pred ----CEEEeeCCCCc
Confidence 68888887754
No 129
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=94.93 E-value=5.7 Score=43.80 Aligned_cols=167 Identities=13% Similarity=-0.013 Sum_probs=90.5
Q ss_pred CCEEEEEcccCCCCC--CceEEEEEECC-CC---cEEEeeccCCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEE
Q 007111 56 GKKVLLVGGKTDSGS--DRVSVWTFDTE-TE---CWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHM 128 (617)
Q Consensus 56 g~~lyV~GG~~~~~~--~~~~v~~yd~~-t~---~W~~~~~~g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~ 128 (617)
+++.+++........ ....+|++|+. +. ....+... . .......+. -++++|+.+..++ ...+|+
T Consensus 198 DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~---~-~~~~~~~~~spdg~l~~~~~~~~----~~~l~~ 269 (662)
T 3azo_A 198 DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG---P-EEAIAQAEWAPDGSLIVATDRTG----WWNLHR 269 (662)
T ss_dssp TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE---T-TBCEEEEEECTTSCEEEEECTTS----SCEEEE
T ss_pred CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC---C-CceEcceEECCCCeEEEEECCCC----CeEEEE
Confidence 555444444322111 23589999998 56 44444310 0 111222222 2567777765543 247999
Q ss_pred EECCCCcEEEeecCC-CC--CCCCc-ccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcce
Q 007111 129 FDLKSLTWLPLHCTG-TG--PSPRS-NHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGC 203 (617)
Q Consensus 129 yD~~t~~W~~l~~~g-~~--P~~R~-~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~h 203 (617)
+|+.+.+|..+.... .. |.-.. ....+.. ++. +++.+.. + ...+|.+|+.++....+... . ....
T Consensus 270 ~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~-~---~~~l~~~d~~~~~~~~l~~~----~-~~~~ 339 (662)
T 3azo_A 270 VDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGL-IAVVHGK-G---AAVLGILDPESGELVDAAGP----W-TEWA 339 (662)
T ss_dssp ECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEEEBS-S---SCEEEEEETTTTEEEECCSS----C-CEEE
T ss_pred EECCCCceeecccccccccCccccccCceEeEeCCCE-EEEEEEc-C---ccEEEEEECCCCcEEEecCC----C-CeEE
Confidence 999899998874210 00 10000 1123333 445 6665544 2 35789999988887666431 1 1122
Q ss_pred EE-EEECCEEEEEecCCCCCccceEEEEECCCCcEEEeec
Q 007111 204 CG-VLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 242 (617)
Q Consensus 204 a~-v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~ 242 (617)
.+ ...++.++++.+... ...++|.+|+.+.....+..
T Consensus 340 ~~~s~~~~~~~~~~~~~~--~~~~i~~~d~~~g~~~~l~~ 377 (662)
T 3azo_A 340 ATLTVSGTRAVGVAASPR--TAYEVVELDTVTGRARTIGA 377 (662)
T ss_dssp EEEEEETTEEEEEEEETT--EEEEEEEEETTTCCEEEEES
T ss_pred EEEecCCCEEEEEEcCCC--CCCEEEEEECCCCceEEeec
Confidence 33 344677766654321 23568999999988887753
No 130
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=94.93 E-value=1.8 Score=42.54 Aligned_cols=176 Identities=18% Similarity=0.070 Sum_probs=85.3
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CC-EEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCc
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 150 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~-~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~ 150 (617)
..+++||+.+.+....-..+ ...+.++.. ++ .||+.+ ..+++||+.+.+-...-..+..+.+.
T Consensus 115 ~~i~v~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~---------~~i~~~d~~~~~~~~~~~~~~~~~~~- 179 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEAP-----RQITMLAWARDGSKLYGLG---------RDLHVMDPEAGTLVEDKPIQSWEAET- 179 (337)
T ss_dssp CEEEEEETTTTEEEEEEECC-----SSCCCEEECTTSSCEEEES---------SSEEEEETTTTEEEEEECSTTTTTTT-
T ss_pred ceEEEEECCCCcEEEEEeCC-----CCcceeEECCCCCEEEEeC---------CeEEEEECCCCcEeeeeeccccCCCc-
Confidence 57999999887654332111 112222222 33 466651 45999999988754332112211111
Q ss_pred ccEEEEECCcEEEEEccCCC-------------C-----CCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CC-
Q 007111 151 NHVAALYDDKNLLIFGGSSK-------------S-----KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT- 210 (617)
Q Consensus 151 ~h~a~~~~~~~LyV~GG~~~-------------~-----~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~- 210 (617)
...-++..+|+.+..+. . .....++.||+.+++-..+... +......+++.. ++
T Consensus 180 ---~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~s~dg~ 253 (337)
T 1pby_B 180 ---YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR---IMDVFYFSTAVNPAKT 253 (337)
T ss_dssp ---BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE---ECSSCEEEEEECTTSS
T ss_pred ---eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecC---CCCCceeeEEECCCCC
Confidence 11112232332221110 0 0112589999998876533321 112222233333 33
Q ss_pred EEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 211 KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 211 ~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.+|+. ...+++||+.+.+.......+ ..-.+ +.+.. +...||+. +. .+.|.+||+.+.+
T Consensus 254 ~l~~~--------~~~v~~~d~~~~~~~~~~~~~------~~~~~-~~~s~-dg~~l~~~-~~----~~~i~v~d~~~~~ 312 (337)
T 1pby_B 254 RAFGA--------YNVLESFDLEKNASIKRVPLP------HSYYS-VNVST-DGSTVWLG-GA----LGDLAAYDAETLE 312 (337)
T ss_dssp EEEEE--------ESEEEEEETTTTEEEEEEECS------SCCCE-EEECT-TSCEEEEE-SB----SSEEEEEETTTCC
T ss_pred EEEEe--------CCeEEEEECCCCcCcceecCC------Cceee-EEECC-CCCEEEEE-cC----CCcEEEEECcCCc
Confidence 55554 156999999887643322111 11122 33332 33456654 33 2579999998765
No 131
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=94.92 E-value=2 Score=47.48 Aligned_cols=193 Identities=13% Similarity=-0.012 Sum_probs=97.5
Q ss_pred ceEEEEEECCC------CcEEEee-ccCCCCCCcceeEEEEECCEEEEEeecCCCCC--ccCeEEEEECC-CC---cEEE
Q 007111 72 RVSVWTFDTET------ECWSVVE-AKGDIPVARSGHTVVRASSVLILFGGEDGKRR--KLNDLHMFDLK-SL---TWLP 138 (617)
Q Consensus 72 ~~~v~~yd~~t------~~W~~~~-~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~--~~~~v~~yD~~-t~---~W~~ 138 (617)
...++++|+.+ .....+. . + ..........-+++.+++...+.... ...+++++|+. +. ....
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~l~~~-~---~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~ 235 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAVRELSDD-A---HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRT 235 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGSEESSCS-C---SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEE
T ss_pred eeEEEEEECCCCccccCCceeEEEec-C---CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEE
Confidence 35899999988 6655543 1 0 11111112222454444444332211 13579999998 56 4444
Q ss_pred eecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCC-CCCCCc---ceEEEEE-CCEE
Q 007111 139 LHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGF-HPSPRA---GCCGVLC-GTKW 212 (617)
Q Consensus 139 l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~-~P~~R~---~ha~v~~-~~~I 212 (617)
+.. + . .......+.. +++ +|+.+..++ ...+|++|+.++.|..+..... ...+.. ...++.. ++++
T Consensus 236 l~~-~--~-~~~~~~~~~spdg~-l~~~~~~~~---~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~ 307 (662)
T 3azo_A 236 LLG-G--P-EEAIAQAEWAPDGS-LIVATDRTG---WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLI 307 (662)
T ss_dssp EEE-E--T-TBCEEEEEECTTSC-EEEEECTTS---SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCE
T ss_pred eCC-C--C-CceEcceEECCCCe-EEEEECCCC---CeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEE
Confidence 421 0 0 1111223333 566 777765543 2479999998999987754211 000110 1123333 6777
Q ss_pred EEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 213 YIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 213 yI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
++.+.. ....+|.+|+.+.....+... ...+..+. ..+++..+|+.++.+ ....+|.+|+.+.+
T Consensus 308 ~~~~~~----~~~~l~~~d~~~~~~~~l~~~-------~~~~~~~~-s~~~~~~~~~~~~~~--~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 308 AVVHGK----GAAVLGILDPESGELVDAAGP-------WTEWAATL-TVSGTRAVGVAASPR--TAYEVVELDTVTGR 371 (662)
T ss_dssp EEEEBS----SSCEEEEEETTTTEEEECCSS-------CCEEEEEE-EEETTEEEEEEEETT--EEEEEEEEETTTCC
T ss_pred EEEEEc----CccEEEEEECCCCcEEEecCC-------CCeEEEEE-ecCCCEEEEEEcCCC--CCCEEEEEECCCCc
Confidence 777654 235789999988877665421 11122220 222333344443332 23467777776554
No 132
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=94.91 E-value=1.2 Score=43.98 Aligned_cols=194 Identities=7% Similarity=-0.009 Sum_probs=91.7
Q ss_pred CCE-EEEEcccCCCCCCceEEEEEEC-CCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKK-VLLVGGKTDSGSDRVSVWTFDT-ETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~-lyV~GG~~~~~~~~~~v~~yd~-~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
++. +++.|+.+ ..+.+||+ .+.....+. ..+....-.+++...+.+++.|+.++ .+.+||+.+
T Consensus 67 ~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~l~s~~~d~------~i~iwd~~~ 131 (342)
T 1yfq_A 67 NTDLQIYVGTVQ------GEILKVDLIGSPSFQALT---NNEANLGICRICKYGDDKLIAASWDG------LIEVIDPRN 131 (342)
T ss_dssp SSSEEEEEEETT------SCEEEECSSSSSSEEECB---SCCCCSCEEEEEEETTTEEEEEETTS------EEEEECHHH
T ss_pred CCCcEEEEEcCC------CeEEEEEeccCCceEecc---ccCCCCceEEEEeCCCCEEEEEcCCC------eEEEEcccc
Confidence 566 67777753 25888999 888765554 10011111223333255666666543 477887764
Q ss_pred Cc-------EEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCC-Cc--EEEeecCCCCCCCCcce
Q 007111 134 LT-------WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET-MI--WTRIKIRGFHPSPRAGC 203 (617)
Q Consensus 134 ~~-------W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t-~~--W~~~~~~g~~P~~R~~h 203 (617)
.. ...+ ..+.... ...++.+.... ++.|+.+ ..+..||+.+ .. ...... +....-.
T Consensus 132 ~~~~~~~~~~~~~---~~~~~~~-~v~~~~~~~~~-l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~----~~~~~i~ 197 (342)
T 1yfq_A 132 YGDGVIAVKNLNS---NNTKVKN-KIFTMDTNSSR-LIVGMNN-----SQVQWFRLPLCEDDNGTIEES----GLKYQIR 197 (342)
T ss_dssp HTTBCEEEEESCS---SSSSSCC-CEEEEEECSSE-EEEEEST-----TEEEEEESSCCTTCCCEEEEC----SCSSCEE
T ss_pred cccccccccCCee---eEEeeCC-ceEEEEecCCc-EEEEeCC-----CeEEEEECCccccccceeeec----CCCCcee
Confidence 10 2212 1222111 12233344442 5556554 3599999987 43 222222 1112222
Q ss_pred EEEEE--CCEEEEEecCCCCCccceEEEEECCCC--------cEEEeecCCCCC--CCCCcceEEEEEeecCCcEEEEEc
Q 007111 204 CGVLC--GTKWYIAGGGSRKKRHAETLIFDILKG--------EWSVAITSPSSS--VTSNKGFTLVLVQHKEKDFLVAFG 271 (617)
Q Consensus 204 a~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~--------~W~~l~~~~~~~--p~~r~~~s~v~v~~~~~~~L~I~G 271 (617)
+++.. ++.++++|+..+ .+.+|++... .... ....... .........+.+.. ++.+++.|
T Consensus 198 ~i~~~~~~~~~l~~~~~dg-----~i~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~ 269 (342)
T 1yfq_A 198 DVALLPKEQEGYACSSIDG-----RVAVEFFDDQGDDYNSSKRFAF-RCHRLNLKDTNLAYPVNSIEFSP--RHKFLYTA 269 (342)
T ss_dssp EEEECSGGGCEEEEEETTS-----EEEEEECCTTCCSTTCTTCEEE-ECCCCCTTCCSSCCCEEEEEECT--TTCCEEEE
T ss_pred EEEECCCCCCEEEEEecCC-----cEEEEEEcCCCcccccccceee-ecccccccccccceeEEEEEEcC--CCCEEEEe
Confidence 33333 466777777543 3555554432 2222 1111000 00011233334432 24466777
Q ss_pred CCCCCCCCeEEEEECCCCc
Q 007111 272 GIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 272 G~~~~~~~dV~vyd~~~~~ 290 (617)
+.++ .|.+||+.+.+
T Consensus 270 ~~dg----~i~vwd~~~~~ 284 (342)
T 1yfq_A 270 GSDG----IISCWNLQTRK 284 (342)
T ss_dssp ETTS----CEEEEETTTTE
T ss_pred cCCc----eEEEEcCccHh
Confidence 7654 58899988765
No 133
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=94.83 E-value=1.9 Score=42.36 Aligned_cols=147 Identities=14% Similarity=0.100 Sum_probs=74.1
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCc-ccceEEEEEC-CEEEEEcccCCCCCCceEEEEEECCCCcEEE-eec
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPA-CRGHSLISWG-KKVLLVGGKTDSGSDRVSVWTFDTETECWSV-VEA 90 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~-r~~hs~v~~g-~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~ 90 (617)
..+.+||+.+.+....-.. +... +.......-+ ..+|+.++. ...+++||+.+.+... ++.
T Consensus 11 ~~v~~~d~~~~~~~~~~~~----------~~~~~~~~~~~~s~dg~~l~v~~~~------~~~v~~~d~~~~~~~~~~~~ 74 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITI----------ADAGPTPMVPMVAPGGRIAYATVNK------SESLVKIDLVTGETLGRIDL 74 (337)
T ss_dssp TEEEEEETTTTEEEEEEEC----------TTCTTCCCCEEECTTSSEEEEEETT------TTEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCCcEEEEEEc----------CCCCCCccceEEcCCCCEEEEEeCC------CCeEEEEECCCCCeEeeEEc
Confidence 4799999988765432210 1100 1111222223 477777643 1369999998877543 321
Q ss_pred cCCCCC--CcceeEEEEE--CCEEEEEeecC---CCCC--ccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCc
Q 007111 91 KGDIPV--ARSGHTVVRA--SSVLILFGGED---GKRR--KLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDK 160 (617)
Q Consensus 91 ~g~~P~--~R~~~s~~~~--~~~IYv~GG~~---~~~~--~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~ 160 (617)
+. +. ....+.++.. +..+|+..+.. .... ....+++||+.+.+....-..+.. -+.++.. +++
T Consensus 75 -~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~-----~~~~~~s~dg~ 147 (337)
T 1pby_B 75 -ST-PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ-----ITMLAWARDGS 147 (337)
T ss_dssp -CB-TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS-----CCCEEECTTSS
T ss_pred -CC-cccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCC-----cceeEECCCCC
Confidence 11 00 0011223332 34677764221 1100 136799999998875543211111 1233333 455
Q ss_pred EEEEEccCCCCCCCCeEEEEECCCCcEEEee
Q 007111 161 NLLIFGGSSKSKTLNDLYSLDFETMIWTRIK 191 (617)
Q Consensus 161 ~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~ 191 (617)
++|+.+ +.+++||+.+++.....
T Consensus 148 ~l~~~~--------~~i~~~d~~~~~~~~~~ 170 (337)
T 1pby_B 148 KLYGLG--------RDLHVMDPEAGTLVEDK 170 (337)
T ss_dssp CEEEES--------SSEEEEETTTTEEEEEE
T ss_pred EEEEeC--------CeEEEEECCCCcEeeee
Confidence 466652 35999999888765443
No 134
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=94.82 E-value=2.9 Score=39.92 Aligned_cols=192 Identities=11% Similarity=-0.039 Sum_probs=101.2
Q ss_pred EEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEE
Q 007111 51 SLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHM 128 (617)
Q Consensus 51 s~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~ 128 (617)
+++.. ++++|+... . ..+++||+.+........ ........++.. ++.+|+.... ...+++
T Consensus 71 ~i~~~~~g~l~v~~~-~------~~i~~~d~~~~~~~~~~~----~~~~~p~~i~~~~~g~l~v~~~~------~~~i~~ 133 (270)
T 1rwi_B 71 GLAVDGAGTVYVTDF-N------NRVVTLAAGSNNQTVLPF----DGLNYPEGLAVDTQGAVYVADRG------NNRVVK 133 (270)
T ss_dssp CEEECTTCCEEEEET-T------TEEEEECTTCSCCEECCC----CSCSSEEEEEECTTCCEEEEEGG------GTEEEE
T ss_pred eeEECCCCCEEEEcC-C------CEEEEEeCCCceEeeeec----CCcCCCcceEECCCCCEEEEECC------CCEEEE
Confidence 34443 467888754 1 269999998876544431 111233444444 5678886432 246888
Q ss_pred EECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE
Q 007111 129 FDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL 207 (617)
Q Consensus 129 yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~ 207 (617)
||..+........ ..+.. -..+++. +++ +|+..... +.|++||+.+......... .. ..-..++.
T Consensus 134 ~~~~~~~~~~~~~-~~~~~---p~~i~~~~~g~-l~v~~~~~-----~~i~~~~~~~~~~~~~~~~---~~-~~p~~i~~ 199 (270)
T 1rwi_B 134 LAAGSKTQTVLPF-TGLND---PDGVAVDNSGN-VYVTDTDN-----NRVVKLEAESNNQVVLPFT---DI-TAPWGIAV 199 (270)
T ss_dssp ECTTCCSCEECCC-CSCCS---CCCEEECTTCC-EEEEEGGG-----TEEEEECTTTCCEEECCCS---SC-CSEEEEEE
T ss_pred EECCCceeEeecc-ccCCC---ceeEEEeCCCC-EEEEECCC-----CEEEEEecCCCceEeeccc---CC-CCceEEEE
Confidence 8876665443311 11111 1234443 355 88775432 3599999987664433221 11 11223333
Q ss_pred E-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEEC
Q 007111 208 C-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 286 (617)
Q Consensus 208 ~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~ 286 (617)
. ++.+|+..... ..+++||+....-..... ........+.+.. ++.||+....+ +.|.+|++
T Consensus 200 d~~g~l~v~~~~~-----~~v~~~~~~~~~~~~~~~------~~~~~p~~i~~~~--~g~l~v~~~~~----~~v~~~~~ 262 (270)
T 1rwi_B 200 DEAGTVYVTEHNT-----NQVVKLLAGSTTSTVLPF------TGLNTPLAVAVDS--DRTVYVADRGN----DRVVKLTS 262 (270)
T ss_dssp CTTCCEEEEETTT-----SCEEEECTTCSCCEECCC------CSCSCEEEEEECT--TCCEEEEEGGG----TEEEEECC
T ss_pred CCCCCEEEEECCC-----CcEEEEcCCCCcceeecc------CCCCCceeEEECC--CCCEEEEECCC----CEEEEEcC
Confidence 3 45888876433 348899987654333211 1112233444442 24577765432 47888887
Q ss_pred CCCc
Q 007111 287 EKNE 290 (617)
Q Consensus 287 ~~~~ 290 (617)
...+
T Consensus 263 ~~~~ 266 (270)
T 1rwi_B 263 LEHH 266 (270)
T ss_dssp CGGG
T ss_pred CCcc
Confidence 6544
No 135
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=94.80 E-value=0.98 Score=46.17 Aligned_cols=197 Identities=11% Similarity=0.103 Sum_probs=96.5
Q ss_pred CEEEEEcccCCCCCCceEEEEEECCCCc------EEEeeccCCCC-CCcceeEEEEE-C-CEEEEEeecCCCCCccCeEE
Q 007111 57 KKVLLVGGKTDSGSDRVSVWTFDTETEC------WSVVEAKGDIP-VARSGHTVVRA-S-SVLILFGGEDGKRRKLNDLH 127 (617)
Q Consensus 57 ~~lyV~GG~~~~~~~~~~v~~yd~~t~~------W~~~~~~g~~P-~~R~~~s~~~~-~-~~IYv~GG~~~~~~~~~~v~ 127 (617)
+.+++.|+.+ ..+.+||+.+.. -..... ... ....-.+++.. + +.+++.|+.++ .+.
T Consensus 126 ~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~v~ 191 (416)
T 2pm9_A 126 DNVLASGGNN------GEIFIWDMNKCTESPSNYTPLTPG--QSMSSVDEVISLAWNQSLAHVFASAGSSN------FAS 191 (416)
T ss_dssp TTBEEEECSS------SCEEBCBTTTTSSCTTTCCCBCCC--CSCCSSCCCCEEEECSSCTTEEEEESSSS------CEE
T ss_pred CCEEEEEcCC------CeEEEEECCCCccccccccccccc--cccCCCCCeeEEEeCCCCCcEEEEEcCCC------CEE
Confidence 5677777753 248888887764 111100 011 11111223332 2 56777776543 489
Q ss_pred EEECCCCcEEEeecCCCCCCC----CcccE-EEEEC-CcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCc
Q 007111 128 MFDLKSLTWLPLHCTGTGPSP----RSNHV-AALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRA 201 (617)
Q Consensus 128 ~yD~~t~~W~~l~~~g~~P~~----R~~h~-a~~~~-~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~ 201 (617)
+||+.+.+....- ..+.. ..... ++... +..+++.|+.++. ...+..||+.+..-. +.... ......
T Consensus 192 iwd~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--~~~i~~~d~~~~~~~-~~~~~-~~~~~~ 264 (416)
T 2pm9_A 192 IWDLKAKKEVIHL---SYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN--DPSILIWDLRNANTP-LQTLN-QGHQKG 264 (416)
T ss_dssp EEETTTTEEEEEE---CCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS--SCCCCEEETTSTTSC-SBCCC-SCCSSC
T ss_pred EEECCCCCcceEE---eccccccccCCceEEEEECCCCCCEEEEEECCCC--CceEEEEeCCCCCCC-cEEee-cCccCc
Confidence 9999887654332 11110 11122 23332 3236777766541 124888998764311 11110 001111
Q ss_pred ceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCC
Q 007111 202 GCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSN 279 (617)
Q Consensus 202 ~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~ 279 (617)
-.+++.. ++.+++.|+.. ..+.+||+.+..-....... ......+.+... ...+++.|+.++
T Consensus 265 v~~~~~s~~~~~~l~s~~~d-----g~v~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~-~~~~l~s~~~d~---- 328 (416)
T 2pm9_A 265 ILSLDWCHQDEHLLLSSGRD-----NTVLLWNPESAEQLSQFPAR------GNWCFKTKFAPE-APDLFACASFDN---- 328 (416)
T ss_dssp EEEEEECSSCSSCEEEEESS-----SEEEEECSSSCCEEEEEECS------SSCCCCEEECTT-CTTEEEECCSSS----
T ss_pred eeEEEeCCCCCCeEEEEeCC-----CCEEEeeCCCCccceeecCC------CCceEEEEECCC-CCCEEEEEecCC----
Confidence 2233332 56777777754 34889998776543321100 111222333322 225777888753
Q ss_pred eEEEEECCCCc
Q 007111 280 QVEVLSIEKNE 290 (617)
Q Consensus 280 dV~vyd~~~~~ 290 (617)
.|.+||+....
T Consensus 329 ~i~iw~~~~~~ 339 (416)
T 2pm9_A 329 KIEVQTLQNLT 339 (416)
T ss_dssp EEEEEESCCCC
T ss_pred cEEEEEccCCC
Confidence 68899987755
No 136
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=94.80 E-value=3.3 Score=40.71 Aligned_cols=188 Identities=9% Similarity=0.073 Sum_probs=94.0
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 135 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~ 135 (617)
++.+++.|+.+ ..+..++........... ..............+.+++.|+.++. +.+||.....
T Consensus 97 dg~~l~s~~~d------~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~s~d~~------~~~~d~~~~~ 161 (340)
T 4aow_A 97 DGQFALSGSWD------GTLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQIVSGSRDKT------IKLWNTLGVC 161 (340)
T ss_dssp TSSEEEEEETT------SEEEEEETTTTEEEEEEE---CCSSCEEEEEECTTSSCEEEEETTSC------EEEECTTSCE
T ss_pred CCCEEEEEccc------ccceEEeecccceeeeec---CCCCceeEEEEeecCccceeecCCCe------EEEEEeCCCc
Confidence 55667777653 257778887776554441 12222222222234566667765443 6677776554
Q ss_pred EEEeecCCCCCCCCcccEEEEE---CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE
Q 007111 136 WLPLHCTGTGPSPRSNHVAALY---DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK 211 (617)
Q Consensus 136 W~~l~~~g~~P~~R~~h~a~~~---~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~ 211 (617)
-..... .........+.+ ....+++.||.++ .+..||+.+......... ....-.+++.. ++.
T Consensus 162 ~~~~~~----~~~~~~v~~~~~~~~~~~~~~~s~~~d~-----~i~i~d~~~~~~~~~~~~----h~~~v~~~~~s~~~~ 228 (340)
T 4aow_A 162 KYTVQD----ESHSEWVSCVRFSPNSSNPIIVSCGWDK-----LVKVWNLANCKLKTNHIG----HTGYLNTVTVSPDGS 228 (340)
T ss_dssp EEEECS----SSCSSCEEEEEECSCSSSCEEEEEETTS-----CEEEEETTTTEEEEEECC----CSSCEEEEEECTTSS
T ss_pred eEEEEe----ccccCcccceEEccCCCCcEEEEEcCCC-----EEEEEECCCCceeeEecC----CCCcEEEEEECCCCC
Confidence 333311 111111122222 2233666777654 388999988765543321 11112233333 567
Q ss_pred EEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 212 WYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 212 IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
+++.|+.. ..+.+||+.+..-..... .......+.+.. .+ .++.|+.+ ..|.+||+.+..
T Consensus 229 ~l~s~s~D-----g~i~iwd~~~~~~~~~~~-------~~~~v~~~~~~~--~~-~~~~~~~d----~~i~iwd~~~~~ 288 (340)
T 4aow_A 229 LCASGGKD-----GQAMLWDLNEGKHLYTLD-------GGDIINALCFSP--NR-YWLCAATG----PSIKIWDLEGKI 288 (340)
T ss_dssp EEEEEETT-----CEEEEEETTTTEEEEEEE-------CSSCEEEEEECS--SS-SEEEEEET----TEEEEEETTTTE
T ss_pred EEEEEeCC-----CeEEEEEeccCceeeeec-------CCceEEeeecCC--CC-ceeeccCC----CEEEEEECCCCe
Confidence 77777755 357889988765433221 111233333332 22 34455543 367888877653
No 137
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=94.77 E-value=0.15 Score=46.72 Aligned_cols=122 Identities=22% Similarity=0.338 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhh---hhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhH----------
Q 007111 472 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSS---VLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ---------- 538 (617)
Q Consensus 472 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~q---------- 538 (617)
.+|+-..|-+-..|+..|.++...++.+.-.... +=.-..+++.+++....|+..|+++++......
T Consensus 5 StKLI~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~i 84 (154)
T 2ocy_A 5 STQLIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKL 84 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777888888888888877777654333222 112233344555566666666665554333222
Q ss_pred ------------HhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhhc
Q 007111 539 ------------EEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLEN 606 (617)
Q Consensus 539 ------------e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (617)
|||| +||... |.|+.. ++-=.+.+++.|+-++++|.. ||..|-+||.-++.||+
T Consensus 85 e~ElEeLTasLFeEAN---~MVa~a--r~~~~~--~e~r~~~L~~ql~e~~~~l~~-------lq~ql~~LK~v~~~m~~ 150 (154)
T 2ocy_A 85 NKEVEDLTASLFDEAN---NMVADA--RKEKYA--IEILNKRLTEQLREKDTLLDT-------LTLQLKNLKKVMHSLDN 150 (154)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHH--HHHHHH--HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHTTSCCC-
T ss_pred HHHHHHHHHHHHHHHH---HHHHHH--HHHHHH--HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhh
Confidence 3344 344422 333221 222234455666666666664 78899999999999986
Q ss_pred c
Q 007111 607 R 607 (617)
Q Consensus 607 ~ 607 (617)
-
T Consensus 151 e 151 (154)
T 2ocy_A 151 E 151 (154)
T ss_dssp -
T ss_pred c
Confidence 3
No 138
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=94.75 E-value=2.3 Score=42.04 Aligned_cols=191 Identities=10% Similarity=0.084 Sum_probs=95.7
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 135 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~ 135 (617)
++.+++.|+.+ ..+.+||..+..-...- ..............++.+++.|+.++ .+.+||..+..
T Consensus 24 ~~~~l~s~~~d------g~v~lWd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~s~d~------~i~vwd~~~~~ 88 (304)
T 2ynn_A 24 TEPWVLTTLYS------GRVELWNYETQVEVRSI---QVTETPVRAGKFIARKNWIIVGSDDF------RIRVFNYNTGE 88 (304)
T ss_dssp SSSEEEEEETT------SEEEEEETTTTEEEEEE---ECCSSCEEEEEEEGGGTEEEEEETTS------EEEEEETTTCC
T ss_pred CCCEEEEEcCC------CcEEEEECCCCceeEEe---eccCCcEEEEEEeCCCCEEEEECCCC------EEEEEECCCCc
Confidence 45666677653 25888898877533221 11111111222223556677776543 48889988775
Q ss_pred EEE-eecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEE
Q 007111 136 WLP-LHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKW 212 (617)
Q Consensus 136 W~~-l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~~~I 212 (617)
-.. +. + ....-.+++...+..+++.|+.++. |..||+.++.-...... .....-.+++.. ++.+
T Consensus 89 ~~~~~~--~---h~~~v~~~~~~~~~~~l~sgs~D~~-----v~lWd~~~~~~~~~~~~---~h~~~v~~v~~~p~~~~~ 155 (304)
T 2ynn_A 89 KVVDFE--A---HPDYIRSIAVHPTKPYVLSGSDDLT-----VKLWNWENNWALEQTFE---GHEHFVMCVAFNPKDPST 155 (304)
T ss_dssp EEEEEE--C---CSSCEEEEEECSSSSEEEEEETTSC-----EEEEEGGGTTEEEEEEC---CCCSCEEEEEECTTCTTE
T ss_pred EEEEEe--C---CCCcEEEEEEcCCCCEEEEECCCCe-----EEEEECCCCcchhhhhc---ccCCcEEEEEECCCCCCE
Confidence 332 21 1 1111123333333337778887754 88899876522111111 111112233332 3467
Q ss_pred EEEecCCCCCccceEEEEECCCCc--EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 213 YIAGGGSRKKRHAETLIFDILKGE--WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 213 yI~GG~s~~~~~~~v~~yDl~~~~--W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
++.|+..+ .+.+||+.... ..... . .......+.+....++.+++.|+.++ .|.+||+.+.+
T Consensus 156 l~sgs~D~-----~v~iwd~~~~~~~~~~~~--~-----~~~~v~~~~~~~~~~~~~l~s~s~D~----~i~iWd~~~~~ 219 (304)
T 2ynn_A 156 FASGCLDR-----TVKVWSLGQSTPNFTLTT--G-----QERGVNYVDYYPLPDKPYMITASDDL----TIKIWDYQTKS 219 (304)
T ss_dssp EEEEETTS-----EEEEEETTCSSCSEEEEC--C-----CTTCEEEEEECCSTTCCEEEEEETTS----EEEEEETTTTE
T ss_pred EEEEeCCC-----eEEEEECCCCCccceecc--C-----CcCcEEEEEEEEcCCCCEEEEEcCCC----eEEEEeCCCCc
Confidence 77777653 47888876532 11111 0 11122333333222345667777653 68889987654
No 139
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=94.74 E-value=3.4 Score=46.32 Aligned_cols=149 Identities=9% Similarity=-0.027 Sum_probs=72.9
Q ss_pred eEEEEECCC-CcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcce
Q 007111 125 DLHMFDLKS-LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGC 203 (617)
Q Consensus 125 ~v~~yD~~t-~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~h 203 (617)
.++++|+.+ .+-..+.. +. +...+-...+.-+++.|++.. .+.......++++|+.++....+........-....
T Consensus 264 ~l~~~d~~~~~~~~~~~~-~~-~~~~~~~~~~~pDg~~l~~~~-~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 340 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDL-GK-EQDIYLARVNWRDPQHLSFQR-QSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN 340 (741)
T ss_dssp EEEEECSSTTCCCEEECC-CS-CSSEEEEEEEEEETTEEEEEE-EETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred EEEEEECCCCCceEEecC-CC-CcceEEEEEEeCCCCEEEEEE-ecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence 788999988 77555521 10 111111222224556444433 222223467999999998887765421100000001
Q ss_pred EEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEE-EEeecCCcEEEEEcCCCCCCCCeE
Q 007111 204 CGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLV-LVQHKEKDFLVAFGGIKKEPSNQV 281 (617)
Q Consensus 204 a~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v-~v~~~~~~~L~I~GG~~~~~~~dV 281 (617)
..+.. ++++++.++..+ ...+|.+|.... +..+.. .......+ .+. .+...|++.+..++.....+
T Consensus 341 ~~~~spdg~~~~~~~~~g---~~~l~~~~~~~~-~~~l~~-------~~~~v~~~~~~s-~dg~~l~~~~~~~~~~~~~l 408 (741)
T 2ecf_A 341 SLRFLDDGSILWSSERTG---FQHLYRIDSKGK-AAALTH-------GNWSVDELLAVD-EKAGLAYFRAGIESARESQI 408 (741)
T ss_dssp CCEECTTSCEEEEECTTS---SCEEEEECSSSC-EEESCC-------SSSCEEEEEEEE-TTTTEEEEEECSSCTTCBEE
T ss_pred ceEECCCCeEEEEecCCC---ccEEEEEcCCCC-eeeeee-------cceEEEeEeEEe-CCCCEEEEEEeCCCCceEEE
Confidence 12222 566666655432 357899987666 555431 11122222 243 33455666665443334456
Q ss_pred EEEECCC
Q 007111 282 EVLSIEK 288 (617)
Q Consensus 282 ~vyd~~~ 288 (617)
|..+...
T Consensus 409 ~~~~~~g 415 (741)
T 2ecf_A 409 YAVPLQG 415 (741)
T ss_dssp EEEETTC
T ss_pred EEEEcCC
Confidence 6666543
No 140
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=94.71 E-value=2.8 Score=47.44 Aligned_cols=115 Identities=12% Similarity=0.070 Sum_probs=62.5
Q ss_pred ceEEEEECCCCc--EEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEee
Q 007111 14 DDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVE 89 (617)
Q Consensus 14 ~~v~~yd~~t~~--W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~ 89 (617)
+.++++|..+.+ |+.-........ +.........+.+..+++||+.... ..++.+|..+.+ |+.-.
T Consensus 87 ~~v~AlD~~tG~~~W~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~v~v~~~d-------g~l~alD~~tG~~~W~~~~ 156 (677)
T 1kb0_A 87 SVVHAIDTRTGNRIWTYDPQIDRSTG---FKGCCDVVNRGVALWKGKVYVGAWD-------GRLIALDAATGKEVWHQNT 156 (677)
T ss_dssp GCEEEEETTTTEEEEEECCCCCGGGG---GGSSSCSCCCCCEEETTEEEEECTT-------SEEEEEETTTCCEEEEEET
T ss_pred CeEEEEECCCCcEEEEEcCCCCcccc---ccccccCCCCCceEECCEEEEEcCC-------CEEEEEECCCCCEEeeecC
Confidence 469999998765 876543110000 0000000112345578888886432 369999998775 87653
Q ss_pred ccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEe
Q 007111 90 AKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPL 139 (617)
Q Consensus 90 ~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l 139 (617)
............+-++.++.+|+..+.... .....++.||..+.+ |+.-
T Consensus 157 ~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~-~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 157 FEGQKGSLTITGAPRVFKGKVIIGNGGAEY-GVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp TTTCCSSCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEEE
T ss_pred CcCcCcCcccccCcEEECCEEEEEeccccc-CCCCEEEEEECCCCcEEEEec
Confidence 100000011222334567888775443221 135679999999876 8864
No 141
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=94.70 E-value=4 Score=45.60 Aligned_cols=124 Identities=10% Similarity=0.085 Sum_probs=66.8
Q ss_pred EEEECCEEEEEcccCCCCCCceEEEEEEC-CCCc--EEEeeccCC--CCCCcc---eeEEEE--ECCE----EEEEeecC
Q 007111 52 LISWGKKVLLVGGKTDSGSDRVSVWTFDT-ETEC--WSVVEAKGD--IPVARS---GHTVVR--ASSV----LILFGGED 117 (617)
Q Consensus 52 ~v~~g~~lyV~GG~~~~~~~~~~v~~yd~-~t~~--W~~~~~~g~--~P~~R~---~~s~~~--~~~~----IYv~GG~~ 117 (617)
-++.++.||+.+.. ...++.+|. .+.+ |+.-..... .+..++ ....++ .++. ||+...
T Consensus 58 P~v~~g~vyv~~~~------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~-- 129 (599)
T 1w6s_A 58 PLVVDGKMYIHTSF------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL-- 129 (599)
T ss_dssp CEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT--
T ss_pred cEEECCEEEEEeCC------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC--
Confidence 34569999998752 125999999 7765 987542110 000111 122344 4666 777521
Q ss_pred CCCCccCeEEEEECCCCc--EEEeecCCCCCCC-CcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCc--EEEee
Q 007111 118 GKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSP-RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIK 191 (617)
Q Consensus 118 ~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~-R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~~ 191 (617)
-..++.+|..+.+ |+.-. +..... ....+-++.++. +|+-.+......-..++.||..+++ |+.-.
T Consensus 130 -----dg~l~AlDa~TG~~~W~~~~--~~~~~~~~~~ssP~v~~g~-V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 130 -----DGNVAALNAETGETVWKVEN--SDIKVGSTLTIAPYVVKDK-VIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp -----TSEEEEEETTTCCEEEEEEC--CCGGGTCBCCSCCEEETTE-EEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred -----CCEEEEEECCCCCEEEeecC--CCCCccceeecCCEEECCE-EEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 2469999998876 98542 110000 111122345665 5553321111123579999998765 87654
No 142
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=94.69 E-value=4.6 Score=41.58 Aligned_cols=136 Identities=13% Similarity=0.084 Sum_probs=66.3
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 93 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~ 93 (617)
.+.+||+.+.+-...-. .....-.+++.. ++..++.|+.+ ..+.+||+.+......-.
T Consensus 146 ~i~iwd~~~~~~~~~~~------------~h~~~v~~~~~~p~~~~l~s~s~d------~~v~iwd~~~~~~~~~~~--- 204 (393)
T 1erj_A 146 LIRIWDIENRKIVMILQ------------GHEQDIYSLDYFPSGDKLVSGSGD------RTVRIWDLRTGQCSLTLS--- 204 (393)
T ss_dssp CEEEEETTTTEEEEEEC------------CCSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEE---
T ss_pred eEEEEECCCCcEEEEEc------------cCCCCEEEEEEcCCCCEEEEecCC------CcEEEEECCCCeeEEEEE---
Confidence 57888887765432211 011111233332 45556666653 368888998876543321
Q ss_pred CCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCC-CCCCC-cc-cEEEEE-CCcEEEEEcc
Q 007111 94 IPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGT-GPSPR-SN-HVAALY-DDKNLLIFGG 167 (617)
Q Consensus 94 ~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~-~P~~R-~~-h~a~~~-~~~~LyV~GG 167 (617)
... .-.+++.. ++.+++.|+.++ .+.+||..+..-...-.... ..... .. .+++.. ++. +++.|+
T Consensus 205 ~~~--~v~~~~~~~~~~~~l~~~s~d~------~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s 275 (393)
T 1erj_A 205 IED--GVTTVAVSPGDGKYIAAGSLDR------AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGS 275 (393)
T ss_dssp CSS--CEEEEEECSTTCCEEEEEETTS------CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEE
T ss_pred cCC--CcEEEEEECCCCCEEEEEcCCC------cEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCC-EEEEEe
Confidence 111 11122222 567788887654 38889988776433210000 00111 11 122222 345 677787
Q ss_pred CCCCCCCCeEEEEECCCC
Q 007111 168 SSKSKTLNDLYSLDFETM 185 (617)
Q Consensus 168 ~~~~~~~n~v~~yD~~t~ 185 (617)
.++ .+..||+.+.
T Consensus 276 ~d~-----~v~~wd~~~~ 288 (393)
T 1erj_A 276 LDR-----SVKLWNLQNA 288 (393)
T ss_dssp TTS-----EEEEEEC---
T ss_pred CCC-----EEEEEECCCC
Confidence 764 4888887653
No 143
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=94.68 E-value=0.71 Score=50.85 Aligned_cols=194 Identities=13% Similarity=0.129 Sum_probs=97.5
Q ss_pred eEEEEEECCCCcEE-EeeccCC-------CCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCC
Q 007111 73 VSVWTFDTETECWS-VVEAKGD-------IPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTG 143 (617)
Q Consensus 73 ~~v~~yd~~t~~W~-~~~~~g~-------~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g 143 (617)
..+.++|..+.+-. .++..+. .|.+|........ +..+|+.+ . ..+.++++|..+.+-..+.
T Consensus 248 ~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~-~-----~~g~i~vvd~~~~~~l~~~--- 318 (543)
T 1nir_A 248 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV-K-----ETGKVLLVNYKDIDNLTVT--- 318 (543)
T ss_dssp SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE-T-----TTTEEEEEECTTSSSCEEE---
T ss_pred CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE-C-----CCCeEEEEEecCCCcceeE---
Confidence 36888898877533 3332110 0222333222222 34555543 2 2357999998775421111
Q ss_pred CCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCC
Q 007111 144 TGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSR 220 (617)
Q Consensus 144 ~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~ 220 (617)
.++..+.-+..+.. +++++|+.+..+ +.|.++|+.+++.......+..|.+..+... .. ++.+|+.+....
T Consensus 319 ~i~~~~~~~~~~~spdg~~l~va~~~~-----~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d 392 (543)
T 1nir_A 319 SIGAAPFLHDGGWDSSHRYFMTAANNS-----NKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGD 392 (543)
T ss_dssp EEECCSSCCCEEECTTSCEEEEEEGGG-----TEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSS
T ss_pred EeccCcCccCceECCCCCEEEEEecCC-----CeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCC
Confidence 11122223333443 456566654333 4689999999887665444444544333332 23 367777764322
Q ss_pred CCccceEEEEECCCC-----cEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCC--CCCeEEEEECCCCc
Q 007111 221 KKRHAETLIFDILKG-----EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE--PSNQVEVLSIEKNE 290 (617)
Q Consensus 221 ~~~~~~v~~yDl~~~-----~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~--~~~dV~vyd~~~~~ 290 (617)
..+-++|..+. .|+.+...+... +.+..+-.+.+...||+-.-.+.+ ..+.|.+||+.+.+
T Consensus 393 ----~~V~v~d~~~~~~~~~~~~~v~~l~~~g-----~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 393 ----GSISLIGTDPKNHPQYAWKKVAELQGQG-----GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp ----SEEEEEECCTTTCTTTBTSEEEEEECSC-----SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred ----ceEEEEEeCCCCCchhcCeEEEEEEcCC-----CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 35778888762 266655333211 111112233445666653311111 24589999998776
No 144
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=94.65 E-value=0.42 Score=50.32 Aligned_cols=193 Identities=9% Similarity=0.034 Sum_probs=94.4
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcce-eEEEE--ECCEEEEEeecCCCCCccCeEEEEECC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSG-HTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLK 132 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~-~s~~~--~~~~IYv~GG~~~~~~~~~~v~~yD~~ 132 (617)
++.+++.|+.++ .|.+||+.+....... ........ .+++. .++.+++.||.++ .+.+||+.
T Consensus 131 ~~~~lasGs~dg------~i~lWd~~~~~~~~~~---~~~gH~~~V~~l~f~p~~~~~l~s~s~D~------~v~iwd~~ 195 (435)
T 4e54_B 131 HPSTVAVGSKGG------DIMLWNFGIKDKPTFI---KGIGAGGSITGLKFNPLNTNQFYASSMEG------TTRLQDFK 195 (435)
T ss_dssp CTTCEEEEETTS------CEEEECSSCCSCCEEE---CCCSSSCCCCEEEECSSCTTEEEEECSSS------CEEEEETT
T ss_pred CCCEEEEEeCCC------EEEEEECCCCCceeEE---EccCCCCCEEEEEEeCCCCCEEEEEeCCC------EEEEeecc
Confidence 456777887632 4788888766533322 11111111 22333 2456677777654 37889998
Q ss_pred CCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--C
Q 007111 133 SLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--G 209 (617)
Q Consensus 133 t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~ 209 (617)
+.....+..... ......++... ++. +++.|+.++ .|..||+.+..-..+.. ....-.+++.. +
T Consensus 196 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~l~~g~~dg-----~i~~wd~~~~~~~~~~~-----h~~~v~~v~~~p~~ 262 (435)
T 4e54_B 196 GNILRVFASSDT--INIWFCSLDVSASSR-MVVTGDNVG-----NVILLNMDGKELWNLRM-----HKKKVTHVALNPCC 262 (435)
T ss_dssp SCEEEEEECCSS--CSCCCCCEEEETTTT-EEEEECSSS-----BEEEEESSSCBCCCSBC-----CSSCEEEEEECTTC
T ss_pred CCceeEEeccCC--CCccEEEEEECCCCC-EEEEEeCCC-----cEeeeccCcceeEEEec-----ccceEEeeeecCCC
Confidence 877665532111 11112233333 455 778888764 48899986543221111 01111222322 3
Q ss_pred CEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 210 TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 210 ~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
..+++.|+..+ .+.+||+.+..-.... . ..........++.+.. ++..++.|+.++ .|.+||+.+.
T Consensus 263 ~~~~~s~s~d~-----~v~iwd~~~~~~~~~~--~-~~~~h~~~v~~~~~sp--dg~~l~s~~~D~----~i~iwd~~~~ 328 (435)
T 4e54_B 263 DWFLATASVDQ-----TVKIWDLRQVRGKASF--L-YSLPHRHPVNAACFSP--DGARLLTTDQKS----EIRVYSASQW 328 (435)
T ss_dssp SSEEEEEETTS-----BCCEEETTTCCSSSCC--S-BCCBCSSCEEECCBCT--TSSEEEEEESSS----CEEEEESSSS
T ss_pred ceEEEEecCcc-----eeeEEecccccccceE--E-EeeeccccccceeECC--CCCeeEEEcCCC----EEEEEECCCC
Confidence 44666666543 3567887654311100 0 0000111222333322 344667777654 5788888764
Q ss_pred c
Q 007111 290 E 290 (617)
Q Consensus 290 ~ 290 (617)
.
T Consensus 329 ~ 329 (435)
T 4e54_B 329 D 329 (435)
T ss_dssp S
T ss_pred c
Confidence 3
No 145
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=94.62 E-value=4 Score=40.64 Aligned_cols=189 Identities=10% Similarity=0.091 Sum_probs=87.4
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-------CCEEEEEeecCCCCCccCeEEE
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-------SSVLILFGGEDGKRRKLNDLHM 128 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-------~~~IYv~GG~~~~~~~~~~v~~ 128 (617)
++.+++.|+.+. .+.+||+....-..+.. ... .-..+... ++.+++.||.++ .+.+
T Consensus 118 ~~~~l~s~s~D~------~i~vwd~~~~~~~~~~~----h~~-~v~~~~~~~~~~~~~~~~~l~s~~~d~------~i~~ 180 (319)
T 3frx_A 118 KASMIISGSRDK------TIKVWTIKGQCLATLLG----HND-WVSQVRVVPNEKADDDSVTIISAGNDK------MVKA 180 (319)
T ss_dssp TSCEEEEEETTS------CEEEEETTSCEEEEECC----CSS-CEEEEEECCC------CCEEEEEETTS------CEEE
T ss_pred CCCEEEEEeCCC------eEEEEECCCCeEEEEec----cCC-cEEEEEEccCCCCCCCccEEEEEeCCC------EEEE
Confidence 456777777632 47777876654433321 111 11111111 233566666544 4788
Q ss_pred EECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE
Q 007111 129 FDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL 207 (617)
Q Consensus 129 yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~ 207 (617)
||+.+.+-...- .+. ...-.+++.. ++. +++.||.++ .|.+||+.+.+-...... +. .-.+++.
T Consensus 181 wd~~~~~~~~~~-~~h---~~~v~~~~~sp~g~-~l~s~~~dg-----~i~iwd~~~~~~~~~~~~---~~--~v~~~~~ 245 (319)
T 3frx_A 181 WNLNQFQIEADF-IGH---NSNINTLTASPDGT-LIASAGKDG-----EIMLWNLAAKKAMYTLSA---QD--EVFSLAF 245 (319)
T ss_dssp EETTTTEEEEEE-CCC---CSCEEEEEECTTSS-EEEEEETTC-----EEEEEETTTTEEEEEEEC---CS--CEEEEEE
T ss_pred EECCcchhheee-cCC---CCcEEEEEEcCCCC-EEEEEeCCC-----eEEEEECCCCcEEEEecC---CC--cEEEEEE
Confidence 998876543321 111 0111123333 445 777888764 489999987754332221 11 1223333
Q ss_pred E-CCEEEEEecCCCCCccceEEEEECCCCc-EEEeecC-CCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEE
Q 007111 208 C-GTKWYIAGGGSRKKRHAETLIFDILKGE-WSVAITS-PSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVL 284 (617)
Q Consensus 208 ~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~-W~~l~~~-~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vy 284 (617)
. ++.+++.+.. ..+.+|++.... +..+... ............++.+.. ++..++.|+.++ .|.+|
T Consensus 246 sp~~~~la~~~~------~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--dg~~l~sg~~Dg----~i~vW 313 (319)
T 3frx_A 246 SPNRYWLAAATA------TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA--DGQTLFAGYTDN----VIRVW 313 (319)
T ss_dssp CSSSSEEEEEET------TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECT--TSSEEEEEETTS----CEEEE
T ss_pred cCCCCEEEEEcC------CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECC--CCCEEEEeecCc----eEEEE
Confidence 3 4444444432 235566665432 2222110 000011111222334432 345677888764 47777
Q ss_pred ECCC
Q 007111 285 SIEK 288 (617)
Q Consensus 285 d~~~ 288 (617)
|+.+
T Consensus 314 d~~t 317 (319)
T 3frx_A 314 QVMT 317 (319)
T ss_dssp EEEE
T ss_pred EEee
Confidence 7654
No 146
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=94.58 E-value=4.2 Score=40.70 Aligned_cols=153 Identities=10% Similarity=0.088 Sum_probs=75.5
Q ss_pred CCEEEEEeecCCCCCccCeEEEEECCC--CcEEEeecCCCCCCCCcccEEEEE--CCcEEEEEccCCCCCCCCeEEEEEC
Q 007111 107 SSVLILFGGEDGKRRKLNDLHMFDLKS--LTWLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDF 182 (617)
Q Consensus 107 ~~~IYv~GG~~~~~~~~~~v~~yD~~t--~~W~~l~~~g~~P~~R~~h~a~~~--~~~~LyV~GG~~~~~~~n~v~~yD~ 182 (617)
++.+++.|+.+. .+.+||+.. ..+..+.. +......-.++.+ ++. +++.|+.++. +..||.
T Consensus 118 ~g~~las~s~D~------~v~iwd~~~~~~~~~~~~~---~~~h~~~v~~v~~~p~~~-~l~s~s~D~~-----i~iW~~ 182 (330)
T 2hes_X 118 DGYYLATCSRDK------SVWIWETDESGEEYECISV---LQEHSQDVKHVIWHPSEA-LLASSSYDDT-----VRIWKD 182 (330)
T ss_dssp TSCEEEEEETTS------CEEEEECCTTCCCCEEEEE---ECCCSSCEEEEEECSSSS-EEEEEETTSC-----EEEEEE
T ss_pred CCCEEEEEeCCC------EEEEEeccCCCCCeEEEEE---eccCCCceEEEEECCCCC-EEEEEcCCCe-----EEEEEC
Confidence 467777777654 378888843 23443321 1111111122222 345 7788887754 888888
Q ss_pred CCCcEEEeecCCCCCCCCcceEEEEEC---CEEEEEecCCCCCccceEEEEECCC------CcEEEeecCCCCCCCCCcc
Q 007111 183 ETMIWTRIKIRGFHPSPRAGCCGVLCG---TKWYIAGGGSRKKRHAETLIFDILK------GEWSVAITSPSSSVTSNKG 253 (617)
Q Consensus 183 ~t~~W~~~~~~g~~P~~R~~ha~v~~~---~~IyI~GG~s~~~~~~~v~~yDl~~------~~W~~l~~~~~~~p~~r~~ 253 (617)
.+..|..+........ .-.++.... +..++.|+..+. +.+||+.. ..|......+.. ....
T Consensus 183 ~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~D~~-----v~iw~~~~~~~~~~~~~~~~~~~~~~---h~~~ 252 (330)
T 2hes_X 183 YDDDWECVAVLNGHEG--TVWSSDFDKTEGVFRLCSGSDDST-----VRVWKYMGDDEDDQQEWVCEAILPDV---HKRQ 252 (330)
T ss_dssp ETTEEEEEEEECCCSS--CEEEEEECCSSSSCEEEEEETTSC-----EEEEEEEEECTTSCEEEEEEEECCSC---CSSC
T ss_pred CCCCeeEEEEccCCCC--cEEEEEecCCCCeeEEEEEeCCCe-----EEEEEecCCCccccceeEEeeecccc---cccc
Confidence 7777776654321111 112222222 345556664432 55555432 245544322211 1112
Q ss_pred eEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 254 FTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 254 ~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
...+.+. ..+ +++.||.++ .|.+||..+..|
T Consensus 253 v~~v~~s--~~~-~l~s~~~dg----~v~iw~~~~~~~ 283 (330)
T 2hes_X 253 VYNVAWG--FNG-LIASVGADG----VLAVYEEVDGEW 283 (330)
T ss_dssp EEEEEEC--TTS-CEEEEETTS----CEEEEEEETTEE
T ss_pred eEEEEEc--CCC-EEEEEeCCC----EEEEEEcCCCce
Confidence 3333343 223 566777654 578888776655
No 147
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.58 E-value=0.035 Score=67.40 Aligned_cols=55 Identities=15% Similarity=0.086 Sum_probs=26.8
Q ss_pred chhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 007111 483 GILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELA 537 (617)
Q Consensus 483 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~ 537 (617)
..++.++..+...++++++.+....+..++++.++....++.+.|++++..++..
T Consensus 881 ~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~e 935 (1184)
T 1i84_S 881 KELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEAR 935 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445544445555555444444444444445555555555555555544443
No 148
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=94.54 E-value=2.9 Score=41.45 Aligned_cols=195 Identities=9% Similarity=0.026 Sum_probs=95.7
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEE-ECCEEEEE----eecCC-------CCCcc
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILF----GGEDG-------KRRKL 123 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~-~~~~IYv~----GG~~~-------~~~~~ 123 (617)
++++|+.... ...+++||+. .+...+..............++. -++.||+. |-... .....
T Consensus 96 dG~l~v~~~~------~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~ 168 (305)
T 3dr2_A 96 QQRLVHCEHG------RRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAH 168 (305)
T ss_dssp TSCEEEEETT------TTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSC
T ss_pred CCCEEEEECC------CCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCC
Confidence 5678776321 1268899986 66665542111111111122333 35788885 32110 01123
Q ss_pred CeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc
Q 007111 124 NDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG 202 (617)
Q Consensus 124 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ 202 (617)
..+++||+.+.+++.+. .+.. -...+.. +++.||+..........+.|++||+..+...........+....
T Consensus 169 ~~v~~~d~~~g~~~~~~---~~~~---p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~p- 241 (305)
T 3dr2_A 169 HSVYRLPPDGSPLQRMA---DLDH---PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLP- 241 (305)
T ss_dssp EEEEEECSSSCCCEEEE---EESS---EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCC-
T ss_pred CeEEEEcCCCCcEEEEe---cCCC---CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCC-
Confidence 57999999888877663 1111 1233343 34457776543211112579999987654332211100111111
Q ss_pred eEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeE
Q 007111 203 CCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQV 281 (617)
Q Consensus 203 ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV 281 (617)
..++.. ++.+|+..+ +.+++||+.......+.. + . ....+++. .+.+.|||.... .+
T Consensus 242 dgi~~d~~G~lwv~~~-------~gv~~~~~~g~~~~~~~~-~----~---~~~~~~f~-~d~~~L~it~~~------~l 299 (305)
T 3dr2_A 242 DGFCVDRGGWLWSSSG-------TGVCVFDSDGQLLGHIPT-P----G---TASNCTFD-QAQQRLFITGGP------CL 299 (305)
T ss_dssp CSEEECTTSCEEECCS-------SEEEEECTTSCEEEEEEC-S----S---CCCEEEEC-TTSCEEEEEETT------EE
T ss_pred CeEEECCCCCEEEecC-------CcEEEECCCCCEEEEEEC-C----C---ceeEEEEe-CCCCEEEEEcCC------eE
Confidence 122332 567777652 248999997766655542 1 1 23334444 344567765432 45
Q ss_pred EEEEC
Q 007111 282 EVLSI 286 (617)
Q Consensus 282 ~vyd~ 286 (617)
+++++
T Consensus 300 ~~~~~ 304 (305)
T 3dr2_A 300 WMLPL 304 (305)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 66653
No 149
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=94.53 E-value=0.14 Score=52.06 Aligned_cols=149 Identities=12% Similarity=0.096 Sum_probs=71.1
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
++.+++.|+.+ ..+.+||+.+..|..+. .+........++.+ ++.+++.|+.++ .+.+||+.+
T Consensus 22 ~g~~l~~~~~d------~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~~l~s~s~d~------~v~vwd~~~ 86 (377)
T 3dwl_C 22 QRTEFVTTTAT------NQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSNRIVTCSQDR------NAYVYEKRP 86 (377)
T ss_dssp SSSEEECCCSS------SCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTCCEEEEETTS------SEEEC----
T ss_pred CCCEEEEecCC------CEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCCEEEEEeCCC------eEEEEEcCC
Confidence 55666777653 24677787788787765 23322222223333 457777777644 488888887
Q ss_pred Cc-EEEeecCCCCCCCCcccEEEEE--CCcEEEEEccCCCCCCCCeEEEEECCCCc-EEEeecCCCCCCCCcceEEEEE-
Q 007111 134 LT-WLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMI-WTRIKIRGFHPSPRAGCCGVLC- 208 (617)
Q Consensus 134 ~~-W~~l~~~g~~P~~R~~h~a~~~--~~~~LyV~GG~~~~~~~n~v~~yD~~t~~-W~~~~~~g~~P~~R~~ha~v~~- 208 (617)
.. |..... +........++.+ ++. +++.|+.++ .+..||+.+.. |........ +....-.+++..
T Consensus 87 ~~~~~~~~~---~~~~~~~v~~~~~~~~~~-~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~ 156 (377)
T 3dwl_C 87 DGTWKQTLV---LLRLNRAATFVRWSPNED-KFAVGSGAR-----VISVCYFEQENDWWVSKHLKR-PLRSTILSLDWHP 156 (377)
T ss_dssp --CCCCEEE---CCCCSSCEEEEECCTTSS-CCEEEESSS-----CEEECCC-----CCCCEEECS-SCCSCEEEEEECT
T ss_pred CCceeeeeE---ecccCCceEEEEECCCCC-EEEEEecCC-----eEEEEEECCcccceeeeEeec-ccCCCeEEEEEcC
Confidence 76 543321 1111111222222 345 677777654 38888887664 322222110 112222233333
Q ss_pred CCEEEEEecCCCCCccceEEEEECCC
Q 007111 209 GTKWYIAGGGSRKKRHAETLIFDILK 234 (617)
Q Consensus 209 ~~~IyI~GG~s~~~~~~~v~~yDl~~ 234 (617)
++.+++.|+..+ .+.+||+..
T Consensus 157 ~~~~l~~~~~d~-----~i~iwd~~~ 177 (377)
T 3dwl_C 157 NNVLLAAGCADR-----KAYVLSAYV 177 (377)
T ss_dssp TSSEEEEEESSS-----CEEEEEECC
T ss_pred CCCEEEEEeCCC-----EEEEEEEEe
Confidence 566777777653 377888753
No 150
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=94.53 E-value=1.9 Score=46.63 Aligned_cols=153 Identities=8% Similarity=0.052 Sum_probs=76.4
Q ss_pred EEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-C-CcEEEEEccCCCCCCCCeEEEEECCCCcE
Q 007111 110 LILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-D-DKNLLIFGGSSKSKTLNDLYSLDFETMIW 187 (617)
Q Consensus 110 IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~-~~~LyV~GG~~~~~~~n~v~~yD~~t~~W 187 (617)
+++.|+.+ ..+.+||..+.+-...- .+.......-.+++.. + +. +++.|+.++ .+.+||+.+++.
T Consensus 175 ~l~~~~~d------~~v~vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg-----~i~vwd~~~~~~ 241 (615)
T 1pgu_A 175 RSMTVGDD------GSVVFYQGPPFKFSASD-RTHHKQGSFVRDVEFSPDSGE-FVITVGSDR-----KISCFDGKSGEF 241 (615)
T ss_dssp EEEEEETT------TEEEEEETTTBEEEEEE-CSSSCTTCCEEEEEECSTTCC-EEEEEETTC-----CEEEEETTTCCE
T ss_pred EEEEEeCC------CcEEEEeCCCcceeeee-cccCCCCceEEEEEECCCCCC-EEEEEeCCC-----eEEEEECCCCCE
Confidence 67777654 35888998776544321 0110000011233333 3 45 777777764 499999988775
Q ss_pred EEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEE
Q 007111 188 TRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFL 267 (617)
Q Consensus 188 ~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L 267 (617)
..............-.+++..++..++.|+.. ..+.+||+.+............ + .......+... .+..
T Consensus 242 ~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~-~-~~~~~~~~~~~---~~~~ 311 (615)
T 1pgu_A 242 LKYIEDDQEPVQGGIFALSWLDSQKFATVGAD-----ATIRVWDVTTSKCVQKWTLDKQ-Q-LGNQQVGVVAT---GNGR 311 (615)
T ss_dssp EEECCBTTBCCCSCEEEEEESSSSEEEEEETT-----SEEEEEETTTTEEEEEEECCTT-C-GGGCEEEEEEE---ETTE
T ss_pred eEEecccccccCCceEEEEEcCCCEEEEEcCC-----CcEEEEECCCCcEEEEEcCCCC-c-ccCceeEEEeC---CCCe
Confidence 54331100001111122222266777777754 3588999987764443221111 1 11122233332 2335
Q ss_pred EEEcCCCCCCCCeEEEEECCCC
Q 007111 268 VAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 268 ~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
++.|+.++ .|.+||+.+.
T Consensus 312 l~~~~~~g----~i~~~d~~~~ 329 (615)
T 1pgu_A 312 IISLSLDG----TLNFYELGHD 329 (615)
T ss_dssp EEEEETTS----CEEEEETTEE
T ss_pred EEEEECCC----CEEEEECCCC
Confidence 66776653 5788887653
No 151
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=94.52 E-value=3.3 Score=46.36 Aligned_cols=149 Identities=13% Similarity=0.114 Sum_probs=74.8
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEEC--C--EEEEEeecCCCCCccCeEEEEEC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS--S--VLILFGGEDGKRRKLNDLHMFDL 131 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~--~--~IYv~GG~~~~~~~~~~v~~yD~ 131 (617)
++..++.|+.+. .+.+||.....-..+.. .....+....++.+. + .+++.|+.++ .+.+||+
T Consensus 483 ~~~~l~s~s~D~------~i~iwd~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~------~v~vwd~ 548 (694)
T 3dm0_A 483 DNRQIVSASRDR------TIKLWNTLGECKYTISE--GGEGHRDWVSCVRFSPNTLQPTIVSASWDK------TVKVWNL 548 (694)
T ss_dssp TSSCEEEEETTS------CEEEECTTSCEEEEECS--STTSCSSCEEEEEECSCSSSCEEEEEETTS------CEEEEET
T ss_pred CCCEEEEEeCCC------EEEEEECCCCcceeecc--CCCCCCCcEEEEEEeCCCCcceEEEEeCCC------eEEEEEC
Confidence 456666666532 47777776554323321 111122222333332 2 4566666544 4889999
Q ss_pred CCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECC
Q 007111 132 KSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGT 210 (617)
Q Consensus 132 ~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~ 210 (617)
.+.+-...- .+ ... .-.+++.. +++ +++.||.++ .|.+||+.+++-..... .....++++...+
T Consensus 549 ~~~~~~~~~-~~--h~~-~v~~v~~spdg~-~l~sg~~Dg-----~i~iwd~~~~~~~~~~~-----~~~~v~~~~~sp~ 613 (694)
T 3dm0_A 549 SNCKLRSTL-AG--HTG-YVSTVAVSPDGS-LCASGGKDG-----VVLLWDLAEGKKLYSLE-----ANSVIHALCFSPN 613 (694)
T ss_dssp TTCCEEEEE-CC--CSS-CEEEEEECTTSS-EEEEEETTS-----BCEEEETTTTEEEECCB-----CSSCEEEEEECSS
T ss_pred CCCcEEEEE-cC--CCC-CEEEEEEeCCCC-EEEEEeCCC-----eEEEEECCCCceEEEec-----CCCcEEEEEEcCC
Confidence 877654331 01 111 11123333 445 778888764 38899998876432211 1122334444444
Q ss_pred EEEEEecCCCCCccceEEEEECCCCcEE
Q 007111 211 KWYIAGGGSRKKRHAETLIFDILKGEWS 238 (617)
Q Consensus 211 ~IyI~GG~s~~~~~~~v~~yDl~~~~W~ 238 (617)
..++++|.. ..+.+||+.+..-.
T Consensus 614 ~~~l~~~~~-----~~i~iwd~~~~~~~ 636 (694)
T 3dm0_A 614 RYWLCAATE-----HGIKIWDLESKSIV 636 (694)
T ss_dssp SSEEEEEET-----TEEEEEETTTTEEE
T ss_pred CcEEEEEcC-----CCEEEEECCCCCCh
Confidence 444444432 23788888876543
No 152
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=94.51 E-value=2 Score=42.34 Aligned_cols=195 Identities=12% Similarity=0.130 Sum_probs=88.9
Q ss_pred CEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--C--CEEEEEeecCCCCCccCeEEEEECC
Q 007111 57 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--S--SVLILFGGEDGKRRKLNDLHMFDLK 132 (617)
Q Consensus 57 ~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~--~~IYv~GG~~~~~~~~~~v~~yD~~ 132 (617)
+.+++.|+.+ ..+.++|+.+..|..+.. +........++.+ + +.+++.|+.++ .+.+||+.
T Consensus 67 g~~l~s~s~D------~~v~iWd~~~~~~~~~~~---~~~h~~~v~~v~~~p~~~g~~l~s~s~d~------~v~~wd~~ 131 (297)
T 2pm7_B 67 GTILASCSYD------GKVMIWKEENGRWSQIAV---HAVHSASVNSVQWAPHEYGPMLLVASSDG------KVSVVEFK 131 (297)
T ss_dssp CSEEEEEETT------TEEEEEEBSSSCBCCCEE---ECCCSSCEEEEEECCGGGCSEEEEEETTS------EEEEEEBC
T ss_pred CCEEEEEcCC------CEEEEEEcCCCceEEEEE---eecCCCceeEEEeCcCCCCcEEEEEECCC------cEEEEEec
Confidence 5677777763 258888888776654431 1111111222222 1 45666776543 46777776
Q ss_pred CCc-EEEeecCCCCCCCCcccEEEEE--------------CCcEEEEEccCCCCCCCCeEEEEECCCC--cEEEeecCCC
Q 007111 133 SLT-WLPLHCTGTGPSPRSNHVAALY--------------DDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGF 195 (617)
Q Consensus 133 t~~-W~~l~~~g~~P~~R~~h~a~~~--------------~~~~LyV~GG~~~~~~~n~v~~yD~~t~--~W~~~~~~g~ 195 (617)
+.. +......+. .. .-.++... ++. +++.|+.++. |..||+.+. .|........
T Consensus 132 ~~~~~~~~~~~~h-~~--~v~~~~~~p~~~~~~~~~~~~~~~~-~l~sgs~D~~-----v~lwd~~~~~~~~~~~~~l~~ 202 (297)
T 2pm7_B 132 ENGTTSPIIIDAH-AI--GVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNL-----VKIWKYNSDAQTYVLESTLEG 202 (297)
T ss_dssp SSSCBCCEEEECC-SS--CEEEEEECCCC------------CC-EEEEEETTSC-----EEEEEEETTTTEEEEEEEECC
T ss_pred CCCceeeeeeecc-cC--ccceEeecCCcccccccCCCCCCcc-eEEEEcCCCc-----EEEEEEcCCCceEEEEEEecC
Confidence 542 211100000 00 00011111 134 6777887653 777777553 3544433211
Q ss_pred CCCCCcceEEEEEC----CEEEEEecCCCCCccceEEEEECCC--CcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEE
Q 007111 196 HPSPRAGCCGVLCG----TKWYIAGGGSRKKRHAETLIFDILK--GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVA 269 (617)
Q Consensus 196 ~P~~R~~ha~v~~~----~~IyI~GG~s~~~~~~~v~~yDl~~--~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I 269 (617)
. ...-.+++... +.+++.|+..+ .+.++|+.. ..|......... .......+.+.. .+.+++
T Consensus 203 H--~~~V~~v~~sp~~~~~~~las~s~D~-----~v~iWd~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~--~g~~la 270 (297)
T 2pm7_B 203 H--SDWVRDVAWSPTVLLRSYMASVSQDR-----TCIIWTQDNEQGPWKKTLLKEEK---FPDVLWRASWSL--SGNVLA 270 (297)
T ss_dssp C--SSCEEEEEECCCCSSSEEEEEEETTS-----CEEEEEESSTTSCCEEEESSSSC---CSSCEEEEEECS--SSCCEE
T ss_pred C--CCceEEEEECCCCCCceEEEEEECCC-----cEEEEEeCCCCCccceeeeeccc---CCCcEEEEEECC--CCCEEE
Confidence 1 11112233322 36777776543 366777654 335432210000 111223333432 244667
Q ss_pred EcCCCCCCCCeEEEEECCC-Ccc
Q 007111 270 FGGIKKEPSNQVEVLSIEK-NES 291 (617)
Q Consensus 270 ~GG~~~~~~~dV~vyd~~~-~~W 291 (617)
.||.++ .|.+|+... ..|
T Consensus 271 s~~~D~----~v~lw~~~~~g~w 289 (297)
T 2pm7_B 271 LSGGDN----KVTLWKENLEGKW 289 (297)
T ss_dssp EEETTS----CEEEEEECTTSCE
T ss_pred EEcCCC----cEEEEEECCCCcE
Confidence 777654 466666543 345
No 153
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.45 E-value=0.073 Score=64.60 Aligned_cols=45 Identities=22% Similarity=0.169 Sum_probs=17.5
Q ss_pred hHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 007111 488 QLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLA 532 (617)
Q Consensus 488 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~ 532 (617)
+|.+....+.+++..+..+.+.+++++.++++...+++.++++++
T Consensus 900 ~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee~l~ 944 (1184)
T 1i84_S 900 KLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQ 944 (1184)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444444444444444443333
No 154
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=94.44 E-value=1.7 Score=42.12 Aligned_cols=147 Identities=13% Similarity=0.116 Sum_probs=75.7
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 135 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~ 135 (617)
++..++.|+.+. .+..||.... ...+. ..............++. ++.|+.++ .+.+||..+.+
T Consensus 154 ~~~~l~~~~~d~------~i~i~d~~~~-~~~~~---~~~~~~i~~~~~~~~~~-~~~~~~dg------~i~i~d~~~~~ 216 (313)
T 3odt_A 154 SENKFLTASADK------TIKLWQNDKV-IKTFS---GIHNDVVRHLAVVDDGH-FISCSNDG------LIKLVDMHTGD 216 (313)
T ss_dssp TTTEEEEEETTS------CEEEEETTEE-EEEEC---SSCSSCEEEEEEEETTE-EEEEETTS------EEEEEETTTCC
T ss_pred CCCEEEEEECCC------CEEEEecCce-EEEEe---ccCcccEEEEEEcCCCe-EEEccCCC------eEEEEECCchh
Confidence 566666666532 4777783221 22222 11222222223334566 66666543 58999998765
Q ss_pred EEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEE
Q 007111 136 WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYI 214 (617)
Q Consensus 136 W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI 214 (617)
-...-. + . ...-.+++...+. .++.|+.++ .+..||+.+......... +... -.+++.. ++. ++
T Consensus 217 ~~~~~~-~--~-~~~i~~~~~~~~~-~l~~~~~dg-----~v~iwd~~~~~~~~~~~~---~~~~-i~~~~~~~~~~-~~ 281 (313)
T 3odt_A 217 VLRTYE-G--H-ESFVYCIKLLPNG-DIVSCGEDR-----TVRIWSKENGSLKQVITL---PAIS-IWSVDCMSNGD-II 281 (313)
T ss_dssp EEEEEE-C--C-SSCEEEEEECTTS-CEEEEETTS-----EEEEECTTTCCEEEEEEC---SSSC-EEEEEECTTSC-EE
T ss_pred hhhhhh-c--C-CceEEEEEEecCC-CEEEEecCC-----EEEEEECCCCceeEEEec---cCce-EEEEEEccCCC-EE
Confidence 332210 1 1 1111233334444 356676653 499999988876554432 2211 2233333 455 55
Q ss_pred EecCCCCCccceEEEEECCCCcEEE
Q 007111 215 AGGGSRKKRHAETLIFDILKGEWSV 239 (617)
Q Consensus 215 ~GG~s~~~~~~~v~~yDl~~~~W~~ 239 (617)
.|+..+ .+.+||+.+..|..
T Consensus 282 ~~~~dg-----~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 282 VGSSDN-----LVRIFSQEKSRWAS 301 (313)
T ss_dssp EEETTS-----CEEEEESCGGGCCC
T ss_pred EEeCCC-----cEEEEeCCCCceee
Confidence 666543 48899988876654
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=94.44 E-value=4.6 Score=40.58 Aligned_cols=247 Identities=14% Similarity=0.141 Sum_probs=110.6
Q ss_pred EEEecCCCCC-ccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEE
Q 007111 2 IVVGGESGNG-LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFD 79 (617)
Q Consensus 2 ~V~GG~~~~~-~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd 79 (617)
+++|...... ..-.++.+|+.+.++..+.... ...| .+.+..- +..||+.+.. ........+|.++
T Consensus 16 ~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~--------~~~p---~~l~~spdg~~l~~~~~~-~~~~~~v~~~~~~ 83 (361)
T 3scy_A 16 MLVGTYTSGNSKGIYTFRFNEETGESLPLSDAE--------VANP---SYLIPSADGKFVYSVNEF-SKDQAAVSAFAFD 83 (361)
T ss_dssp EEEEECCSSSCCEEEEEEEETTTCCEEEEEEEE--------CSCC---CSEEECTTSSEEEEEECC-SSTTCEEEEEEEE
T ss_pred EEEEeccCCCCCCEEEEEEeCCCCCEEEeeccc--------CCCC---ceEEECCCCCEEEEEEcc-CCCCCcEEEEEEe
Confidence 4567654321 1123555677888887665420 0111 1112222 3457766543 1112233567777
Q ss_pred CCCCcEEEeeccCCCC-CCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc-EEE----eecCCCCCCC-----
Q 007111 80 TETECWSVVEAKGDIP-VARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT-WLP----LHCTGTGPSP----- 148 (617)
Q Consensus 80 ~~t~~W~~~~~~g~~P-~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~-W~~----l~~~g~~P~~----- 148 (617)
..+...+.+.. .+ .......++..+..+|+.+ .. ...+.+|++.+.. ... +...+..|.+
T Consensus 84 ~~~g~~~~~~~---~~~~~~~p~~~~~dg~~l~~~~-~~-----~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~ 154 (361)
T 3scy_A 84 KEKGTLHLLNT---QKTMGADPCYLTTNGKNIVTAN-YS-----GGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTM 154 (361)
T ss_dssp TTTTEEEEEEE---EECSSSCEEEEEECSSEEEEEE-TT-----TTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSS
T ss_pred CCCCcEEEeeE---eccCCCCcEEEEECCCEEEEEE-CC-----CCEEEEEEeCCCCcCcccceeEEccCCCCCccccCC
Confidence 77777776652 22 1222233333334566543 21 2458888886432 111 1111222211
Q ss_pred CcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCc-------EEEe-----ecCCCCCCCCcceEEEEE-CC-EEE
Q 007111 149 RSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMI-------WTRI-----KIRGFHPSPRAGCCGVLC-GT-KWY 213 (617)
Q Consensus 149 R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~-------W~~~-----~~~g~~P~~R~~ha~v~~-~~-~Iy 213 (617)
..-|.+++. +++++|+.+..+ +.+++|++.... .... ... +....-..++.. ++ .+|
T Consensus 155 ~~~~~~~~spdg~~l~~~~~~~-----~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~spdg~~l~ 226 (361)
T 3scy_A 155 PHLHCVRITPDGKYLLADDLGT-----DQIHKFNINPNANADNKEKFLTKGTPEAFKV---APGSGPRHLIFNSDGKFAY 226 (361)
T ss_dssp CCEEEEEECTTSSEEEEEETTT-----TEEEEEEECTTCCTTTCCCCEEEEEEEEEEC---CTTCCEEEEEECTTSSEEE
T ss_pred CcceEEEECCCCCEEEEEeCCC-----CEEEEEEEcCCCCcccccceeecccccceec---CCCCCCeEEEEcCCCCEEE
Confidence 111334443 455566654322 357777765433 2111 111 111111223333 44 577
Q ss_pred EEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECC
Q 007111 214 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 287 (617)
Q Consensus 214 I~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~ 287 (617)
+.+... +.+.+||+.+..+..+...... +....+...+.+..+ ...||+.+... .+.|.+|++.
T Consensus 227 v~~~~~-----~~v~v~~~~~g~~~~~~~~~~~-~~~~~~~~~i~~spd-g~~l~v~~~~~---~~~i~v~~~~ 290 (361)
T 3scy_A 227 LINEIG-----GTVIAFRYADGMLDEIQTVAAD-TVNAQGSGDIHLSPD-GKYLYASNRLK---ADGVAIFKVD 290 (361)
T ss_dssp EEETTT-----CEEEEEEEETTEEEEEEEEESC-SSCCCCEEEEEECTT-SSEEEEEECSS---SCEEEEEEEC
T ss_pred EEcCCC-----CeEEEEEecCCceEEeEEEecC-CCCCCCcccEEECCC-CCEEEEECCCC---CCEEEEEEEc
Confidence 765322 3588888877776554422211 112223344455433 34566544320 2357777764
No 156
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.41 E-value=0.39 Score=57.70 Aligned_cols=193 Identities=9% Similarity=0.042 Sum_probs=92.3
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 135 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~ 135 (617)
+++.++.||.+ ..+.+||..+....... . ....-.+++...+..++.|+.+ ..+.+||..+.+
T Consensus 1014 dg~~l~s~~~d------g~i~vwd~~~~~~~~~~---~--~~~~v~~~~~~~~~~l~~~~~d------g~v~vwd~~~~~ 1076 (1249)
T 3sfz_A 1014 DGKTLISSSED------SVIQVWNWQTGDYVFLQ---A--HQETVKDFRLLQDSRLLSWSFD------GTVKVWNVITGR 1076 (1249)
T ss_dssp SSSCEEEECSS------SBEEEEETTTTEEECCB---C--CSSCEEEEEECSSSEEEEEESS------SEEEEEETTTTC
T ss_pred CCCEEEEEcCC------CEEEEEECCCCceEEEe---c--CCCcEEEEEEcCCCcEEEEECC------CcEEEEECCCCc
Confidence 55666777653 25888999888765433 1 1111222333334445566553 358899988776
Q ss_pred EEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEE
Q 007111 136 WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYI 214 (617)
Q Consensus 136 W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI 214 (617)
-...-. + ........+..-++. +++.|+.++. +..||..+... +.... .....-.+++.. ++.+++
T Consensus 1077 ~~~~~~-~--~~~~v~~~~~s~d~~-~l~s~s~d~~-----v~iwd~~~~~~--~~~l~--~h~~~v~~~~~s~dg~~la 1143 (1249)
T 3sfz_A 1077 IERDFT-C--HQGTVLSCAISSDAT-KFSSTSADKT-----AKIWSFDLLSP--LHELK--GHNGCVRCSAFSLDGILLA 1143 (1249)
T ss_dssp CCEEEE-C--CSSCCCCEEECSSSS-SCEEECCSSC-----CCEECSSSSSC--SBCCC--CCSSCEEEEEECSSSSEEE
T ss_pred eeEEEc-c--cCCcEEEEEECCCCC-EEEEEcCCCc-----EEEEECCCcce--eeeec--cCCCcEEEEEECCCCCEEE
Confidence 332210 1 111111122223455 6677776643 77888766542 11110 011111222222 667777
Q ss_pred EecCCCCCccceEEEEECCCCcEEEeec-CCC-CC-CCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 215 AGGGSRKKRHAETLIFDILKGEWSVAIT-SPS-SS-VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 215 ~GG~s~~~~~~~v~~yDl~~~~W~~l~~-~~~-~~-p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
.|+.++. +.+||+.+........ ... .. .........+.+..+ +.+++.|| +.|.+||+.+.+.
T Consensus 1144 t~~~dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d--g~~l~s~~------g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1144 TGDDNGE-----IRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPD--SKTLVSAG------GYLKWWNVATGDS 1210 (1249)
T ss_dssp EEETTSC-----CCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTT--SSCEEEES------SSEEEBCSSSCBC
T ss_pred EEeCCCE-----EEEEECCCCceEEEeccccccccccccCceEEEEEECCC--CCEEEECC------CeEEEEECCCCce
Confidence 7775533 6788887654222110 000 00 011112333444332 33444554 2688999887664
No 157
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=94.41 E-value=4.8 Score=40.64 Aligned_cols=208 Identities=12% Similarity=0.042 Sum_probs=99.5
Q ss_pred ceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCc
Q 007111 72 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 150 (617)
Q Consensus 72 ~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~ 150 (617)
...++++|+.+..-..+... .....+....- ++..+++............+|.+|+.+.....+. .......
T Consensus 167 ~~~l~~~d~~~g~~~~l~~~----~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~---~~~~~~~ 239 (388)
T 3pe7_A 167 CCRLMRVDLKTGESTVILQE----NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVK---THAEGES 239 (388)
T ss_dssp CEEEEEEETTTCCEEEEEEE----SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESC---CCCTTEE
T ss_pred cceEEEEECCCCceEEeecC----CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEee---eCCCCcc
Confidence 36899999999876666421 12223333333 4554444443332223568999999887777663 1111111
Q ss_pred ccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCC---CCCcceEEEEECCEEEEEe----cCCCCC
Q 007111 151 NHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHP---SPRAGCCGVLCGTKWYIAG----GGSRKK 222 (617)
Q Consensus 151 ~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P---~~R~~ha~v~~~~~IyI~G----G~s~~~ 222 (617)
....+.. +++.|+...... ......++++|+.+++...+...+... ....+.+....+..+++.. |.. ..
T Consensus 240 ~~~~~~spdg~~l~~~~~~~-~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~-~~ 317 (388)
T 3pe7_A 240 CTHEFWVPDGSALVYVSYLK-GSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYK-IE 317 (388)
T ss_dssp EEEEEECTTSSCEEEEEEET-TCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-------------C
T ss_pred cccceECCCCCEEEEEecCC-CCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccc-cC
Confidence 1112222 455354433222 211235999999998877665431100 0001112223333444321 111 11
Q ss_pred ccceEEEEECCCCcEEEeecCCCCCC----CCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 223 RHAETLIFDILKGEWSVAITSPSSSV----TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 223 ~~~~v~~yDl~~~~W~~l~~~~~~~p----~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
....++++|+.+.....+........ ........+.+.. +...|++....++ ...+|.+++....|
T Consensus 318 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sp-Dg~~l~~~s~~~g--~~~l~~~~l~~~~~ 387 (388)
T 3pe7_A 318 NDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTP-DDKQILFTSDVHG--KPALYLATLPESVW 387 (388)
T ss_dssp CCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECT-TSSEEEEEECTTS--SCEEEEEECCGGGG
T ss_pred CCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCC-CCCEEEEEecCCC--ceeEEEEECChhcc
Confidence 23579999999988777654322000 0000112223332 2344554444333 34799999887765
No 158
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.40 E-value=0.89 Score=46.15 Aligned_cols=198 Identities=8% Similarity=-0.007 Sum_probs=97.1
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCE-EEEEcccCCCCCCceEEEEEECCCCcEEEeecc
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKK-VLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 91 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~-lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 91 (617)
..++.+|+.+.+...+... +....+....- ++. |++... .........+|.+|+.+..+..+..
T Consensus 168 ~~l~~~d~~~g~~~~~~~~------------~~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~- 233 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIHQD------------TAWLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKE- 233 (396)
T ss_dssp EEEEEEETTTCCEEEEEEE------------SSCEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSC-
T ss_pred ceEEEEECCCCcEEeeccC------------CcccccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeec-
Confidence 4689999998887666531 11122222222 344 444432 1111122479999998887776652
Q ss_pred CCCCCCccee-EEEE-ECCE-EEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEcc
Q 007111 92 GDIPVARSGH-TVVR-ASSV-LILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGG 167 (617)
Q Consensus 92 g~~P~~R~~~-s~~~-~~~~-IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG 167 (617)
..+.... ..+. -++. |++.+...+. ....++++|+.+.+...+. ..+. .. .+..- +++ ++++++
T Consensus 234 ---~~~~~~~~~~~~spdg~~l~~~~~~~~~--~~~~l~~~d~~~g~~~~l~---~~~~--~~-~~~s~~dg~-~l~~~~ 301 (396)
T 3c5m_A 234 ---HAEGESCTHEFWIPDGSAMAYVSYFKGQ--TDRVIYKANPETLENEEVM---VMPP--CS-HLMSNFDGS-LMVGDG 301 (396)
T ss_dssp ---CCTTEEEEEEEECTTSSCEEEEEEETTT--CCEEEEEECTTTCCEEEEE---ECCS--EE-EEEECSSSS-EEEEEE
T ss_pred ---cCCCccccceEECCCCCEEEEEecCCCC--ccceEEEEECCCCCeEEee---eCCC--CC-CCccCCCCc-eEEEec
Confidence 1111111 1222 2444 4444322221 1245999999988877764 2221 11 22223 566 555544
Q ss_pred CCC-----------CCCCCeEEEEECCCCcEEEeecCCCCC-----C-CCcceEEEE-ECC-EEEEEecCCCCCccceEE
Q 007111 168 SSK-----------SKTLNDLYSLDFETMIWTRIKIRGFHP-----S-PRAGCCGVL-CGT-KWYIAGGGSRKKRHAETL 228 (617)
Q Consensus 168 ~~~-----------~~~~n~v~~yD~~t~~W~~~~~~g~~P-----~-~R~~ha~v~-~~~-~IyI~GG~s~~~~~~~v~ 228 (617)
.+. ......++++|+.++....+....... . .......+. -++ .|++.+...+ ...+|
T Consensus 302 ~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~---~~~l~ 378 (396)
T 3c5m_A 302 CDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEG---VPAIY 378 (396)
T ss_dssp CCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTS---SCEEE
T ss_pred CCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCC---CceEE
Confidence 320 012357999999888776665431100 0 000111122 234 5555543322 24689
Q ss_pred EEECCCCcEEEe
Q 007111 229 IFDILKGEWSVA 240 (617)
Q Consensus 229 ~yDl~~~~W~~l 240 (617)
.+|+....++.+
T Consensus 379 ~~~~~~~~~~~~ 390 (396)
T 3c5m_A 379 IADVPESYKHLE 390 (396)
T ss_dssp EEECCTTCC---
T ss_pred EEEEcccccccc
Confidence 999888776664
No 159
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=94.35 E-value=5.1 Score=40.67 Aligned_cols=166 Identities=15% Similarity=0.112 Sum_probs=84.1
Q ss_pred EEEEEECCCCcEEEeeccCCCCCCcceeEEEEE---CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCc
Q 007111 74 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRA---SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 150 (617)
Q Consensus 74 ~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~---~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~ 150 (617)
.+.+||+.+......-. + ..... .++... ++.+++.||.++ .+.+||+.+.+....- .... ..
T Consensus 177 ~v~lwd~~~~~~~~~~~-~--h~~~v-~~~~~~~~~~g~~l~sgs~Dg------~v~~wd~~~~~~~~~~---~~h~-~~ 242 (354)
T 2pbi_B 177 TCALWDVESGQLLQSFH-G--HGADV-LCLDLAPSETGNTFVSGGCDK------KAMVWDMRSGQCVQAF---ETHE-SD 242 (354)
T ss_dssp EEEEEETTTCCEEEEEE-C--CSSCE-EEEEECCCSSCCEEEEEETTS------CEEEEETTTCCEEEEE---CCCS-SC
T ss_pred cEEEEeCCCCeEEEEEc-C--CCCCe-EEEEEEeCCCCCEEEEEeCCC------eEEEEECCCCcEEEEe---cCCC-CC
Confidence 58888988776432210 0 11111 111111 346778887654 3889999888765431 1111 11
Q ss_pred ccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceE
Q 007111 151 NHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAET 227 (617)
Q Consensus 151 ~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v 227 (617)
-.+++.. ++. +++.|+.++. +..||+.+..-...... .........+.+ ++.+++.|+..+ .+
T Consensus 243 v~~v~~~p~~~-~l~s~s~D~~-----v~lwd~~~~~~~~~~~~---~~~~~~~~~~~~s~~g~~l~~g~~d~-----~i 308 (354)
T 2pbi_B 243 VNSVRYYPSGD-AFASGSDDAT-----CRLYDLRADREVAIYSK---ESIIFGASSVDFSLSGRLLFAGYNDY-----TI 308 (354)
T ss_dssp EEEEEECTTSS-EEEEEETTSC-----EEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSSEEEEEETTS-----CE
T ss_pred eEEEEEeCCCC-EEEEEeCCCe-----EEEEECCCCcEEEEEcC---CCcccceeEEEEeCCCCEEEEEECCC-----cE
Confidence 1122233 345 7788887654 88999987754433221 111222233333 566777776543 48
Q ss_pred EEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCC
Q 007111 228 LIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK 275 (617)
Q Consensus 228 ~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~ 275 (617)
.+||+.+..-.... . ........+.+.. ++.+++.|+.++
T Consensus 309 ~vwd~~~~~~~~~l--~----~h~~~v~~l~~sp--dg~~l~sgs~D~ 348 (354)
T 2pbi_B 309 NVWDVLKGSRVSIL--F----GHENRVSTLRVSP--DGTAFCSGSWDH 348 (354)
T ss_dssp EEEETTTCSEEEEE--C----CCSSCEEEEEECT--TSSCEEEEETTS
T ss_pred EEEECCCCceEEEE--E----CCCCcEEEEEECC--CCCEEEEEcCCC
Confidence 89998665422211 1 0112233444432 244667777654
No 160
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=94.34 E-value=0.69 Score=46.04 Aligned_cols=222 Identities=11% Similarity=0.052 Sum_probs=106.6
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEEC----CEEEEEcccCCCCCCceEEEEEECCCCc--EEE
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWG----KKVLLVGGKTDSGSDRVSVWTFDTETEC--WSV 87 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g----~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~ 87 (617)
..+.+||..+.......... .... -.++.... +.+++.|+.+ ..+.+||..+.. ...
T Consensus 44 ~~v~iw~~~~~~~~~~~~~~----------~~~~-v~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~ 106 (357)
T 3i2n_A 44 GVIQLYEIQHGDLKLLREIE----------KAKP-IKCGTFGATSLQQRYLATGDFG------GNLHIWNLEAPEMPVYS 106 (357)
T ss_dssp EEEEEEEECSSSEEEEEEEE----------ESSC-EEEEECTTCCTTTCCEEEEETT------SCEEEECTTSCSSCSEE
T ss_pred cEEEEEeCCCCcccceeeec----------ccCc-EEEEEEcCCCCCCceEEEecCC------CeEEEEeCCCCCccEEE
Confidence 36888998887765443210 0000 12222222 3667777653 247888887664 222
Q ss_pred eeccCCCCCCcceeEEEE-------ECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEeecCCCCCCCCcccEEEE--
Q 007111 88 VEAKGDIPVARSGHTVVR-------ASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAAL-- 156 (617)
Q Consensus 88 ~~~~g~~P~~R~~~s~~~-------~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~h~a~~-- 156 (617)
+. ..... -.++.. .++.+++.|+.++ .+.+||+.+.. ...+... .....+.-.+++.
T Consensus 107 ~~---~~~~~--v~~~~~~~~~~~s~~~~~l~~~~~d~------~i~vwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~ 174 (357)
T 3i2n_A 107 VK---GHKEI--INAIDGIGGLGIGEGAPEIVTGSRDG------TVKVWDPRQKDDPVANMEPV-QGENKRDCWTVAFGN 174 (357)
T ss_dssp EC---CCSSC--EEEEEEESGGGCC-CCCEEEEEETTS------CEEEECTTSCSSCSEEECCC-TTSCCCCEEEEEEEC
T ss_pred EE---ecccc--eEEEeeccccccCCCccEEEEEeCCC------eEEEEeCCCCCCcceecccc-CCCCCCceEEEEEEe
Confidence 21 00111 111111 2456677776644 48889988764 3333210 0001111112221
Q ss_pred ---ECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE----CCEEEEEecCCCCCccceEEE
Q 007111 157 ---YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC----GTKWYIAGGGSRKKRHAETLI 229 (617)
Q Consensus 157 ---~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~----~~~IyI~GG~s~~~~~~~v~~ 229 (617)
-++. +++.|+.++ .+..||+.+..-...... ...-.+++.. ++..+++|+..+ .+.+
T Consensus 175 ~~~~~~~-~l~~~~~d~-----~i~i~d~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~l~~~~~dg-----~i~i 238 (357)
T 3i2n_A 175 AYNQEER-VVCAGYDNG-----DIKLFDLRNMALRWETNI-----KNGVCSLEFDRKDISMNKLVATSLEG-----KFHV 238 (357)
T ss_dssp CCC-CCC-EEEEEETTS-----EEEEEETTTTEEEEEEEC-----SSCEEEEEESCSSSSCCEEEEEESTT-----EEEE
T ss_pred ccCCCCC-EEEEEccCC-----eEEEEECccCceeeecCC-----CCceEEEEcCCCCCCCCEEEEECCCC-----eEEE
Confidence 2455 677776653 599999988775443322 1222333333 456677776543 4777
Q ss_pred EECCCCc----EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 230 FDILKGE----WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 230 yDl~~~~----W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
||+.+.. +..... .........+.+. .+...+++.|+.++ .|.+||+....
T Consensus 239 ~d~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~-~~~~~~l~~~~~dg----~i~iwd~~~~~ 293 (357)
T 3i2n_A 239 FDMRTQHPTKGFASVSE-----KAHKSTVWQVRHL-PQNRELFLTAGGAG----GLHLWKYEYPI 293 (357)
T ss_dssp EEEEEEETTTEEEEEEE-----ECCSSCEEEEEEE-TTEEEEEEEEETTS----EEEEEEEECCS
T ss_pred EeCcCCCcccceeeecc-----CCCcCCEEEEEEC-CCCCcEEEEEeCCC----cEEEeecCCCc
Confidence 7765421 111000 0111223333333 22233777887754 68888887654
No 161
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=94.31 E-value=2.5 Score=41.89 Aligned_cols=193 Identities=13% Similarity=-0.013 Sum_probs=96.7
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 134 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~ 134 (617)
++.+|+.+-. ...+++||+.+........ +. +. .+++.. ++.+|+.. .+.+++||+.+.
T Consensus 24 ~~~l~~~d~~------~~~i~~~d~~~~~~~~~~~----~~-~~-~~i~~~~dG~l~v~~--------~~~l~~~d~~~g 83 (297)
T 3g4e_A 24 SNSLLFVDIP------AKKVCRWDSFTKQVQRVTM----DA-PV-SSVALRQSGGYVATI--------GTKFCALNWKEQ 83 (297)
T ss_dssp TTEEEEEETT------TTEEEEEETTTCCEEEEEC----SS-CE-EEEEEBTTSSEEEEE--------TTEEEEEETTTT
T ss_pred CCEEEEEECC------CCEEEEEECCCCcEEEEeC----CC-ce-EEEEECCCCCEEEEE--------CCeEEEEECCCC
Confidence 4688887643 2369999999887655541 21 11 223332 45666542 246999999999
Q ss_pred cEEEeecCCC-CCCCCcccEEEEE-CCcEEEEEccCCC------CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEE
Q 007111 135 TWLPLHCTGT-GPSPRSNHVAALY-DDKNLLIFGGSSK------SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGV 206 (617)
Q Consensus 135 ~W~~l~~~g~-~P~~R~~h~a~~~-~~~~LyV~GG~~~------~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v 206 (617)
+++.+..... .+..+.. .+++. +++ +|+..-... ......+|++|+. +....+... ...-..++
T Consensus 84 ~~~~~~~~~~~~~~~~~~-di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~-----~~~pngi~ 155 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFN-DGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQ-----VDISNGLD 155 (297)
T ss_dssp EEEEEEECCTTCSSEEEE-EEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEE-----ESBEEEEE
T ss_pred cEEEEEecCCCCCCCCCC-CEEECCCCC-EEEecCCcccccccccCCCcEEEEEECC-CCEEEEeec-----cccccceE
Confidence 8887642211 1222222 22222 455 666321111 1223568999885 344433221 01112333
Q ss_pred EE--CCEEEEEecCCCCCccceEEEEEC--CCCcEEE---eecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCC
Q 007111 207 LC--GTKWYIAGGGSRKKRHAETLIFDI--LKGEWSV---AITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSN 279 (617)
Q Consensus 207 ~~--~~~IyI~GG~s~~~~~~~v~~yDl--~~~~W~~---l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~ 279 (617)
.. +..+|+..... ..+++||+ .+..... +...+. .......+.+. .++.||+..... +
T Consensus 156 ~spdg~~lyv~~~~~-----~~i~~~~~d~~~G~~~~~~~~~~~~~----~~~~p~g~~~d--~~G~lwva~~~~----~ 220 (297)
T 3g4e_A 156 WSLDHKIFYYIDSLS-----YSVDAFDYDLQTGQISNRRSVYKLEK----EEQIPDGMCID--AEGKLWVACYNG----G 220 (297)
T ss_dssp ECTTSCEEEEEEGGG-----TEEEEEEECTTTCCEEEEEEEEECCG----GGCEEEEEEEB--TTSCEEEEEETT----T
T ss_pred EcCCCCEEEEecCCC-----CcEEEEeccCCCCcccCcEEEEECCC----CCCCCCeeEEC--CCCCEEEEEcCC----C
Confidence 33 44688876432 45888876 4444321 111110 00111223333 235677654221 2
Q ss_pred eEEEEECCCCcc
Q 007111 280 QVEVLSIEKNES 291 (617)
Q Consensus 280 dV~vyd~~~~~W 291 (617)
.|.+||+++.+.
T Consensus 221 ~v~~~d~~tG~~ 232 (297)
T 3g4e_A 221 RVIRLDPVTGKR 232 (297)
T ss_dssp EEEEECTTTCCE
T ss_pred EEEEEcCCCceE
Confidence 699999986653
No 162
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.28 E-value=0.02 Score=63.96 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=48.7
Q ss_pred CCcchhhhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhhcc
Q 007111 551 DNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLENR 607 (617)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (617)
++-+++.++...++-++..++|.-..+..+-..+.+.|.|+-|+.++++.++.+|..
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 524 ETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577778888888888889999999999999999999999999999999998843
No 163
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=94.22 E-value=4.3 Score=39.31 Aligned_cols=202 Identities=6% Similarity=-0.008 Sum_probs=103.8
Q ss_pred eEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCC-CcceeEEEEE--CCEEEEEeecCCCCCccCe
Q 007111 50 HSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPV-ARSGHTVVRA--SSVLILFGGEDGKRRKLND 125 (617)
Q Consensus 50 hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~-~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~ 125 (617)
++++.. ++.+|+.+... ..+.+||+.......+...+..+. ......++.. ++.+|+.+... ...
T Consensus 33 ~~v~~~~~g~l~v~~~~~------~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~-----~~~ 101 (286)
T 1q7f_A 33 SGVAVNAQNDIIVADTNN------HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP-----THQ 101 (286)
T ss_dssp EEEEECTTCCEEEEEGGG------TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG-----GCE
T ss_pred ceEEECCCCCEEEEECCC------CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC-----CCE
Confidence 334433 46788876431 369999988665545542221111 1233445543 57888876321 246
Q ss_pred EEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEE
Q 007111 126 LHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCG 205 (617)
Q Consensus 126 v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~ 205 (617)
+.+||+.......+. . +....-+.+++..+..+|+..... +.+++||+.......+...+ ....-.++
T Consensus 102 i~~~d~~g~~~~~~~---~-~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~~g~~~~~~~~~~---~~~~p~~i 169 (286)
T 1q7f_A 102 IQIYNQYGQFVRKFG---A-TILQHPRGVTVDNKGRIIVVECKV-----MRVIIFDQNGNVLHKFGCSK---HLEFPNGV 169 (286)
T ss_dssp EEEECTTSCEEEEEC---T-TTCSCEEEEEECTTSCEEEEETTT-----TEEEEECTTSCEEEEEECTT---TCSSEEEE
T ss_pred EEEECCCCcEEEEec---C-ccCCCceEEEEeCCCCEEEEECCC-----CEEEEEcCCCCEEEEeCCCC---ccCCcEEE
Confidence 899996554444342 1 111111233333333388875433 46999998765544443211 11111233
Q ss_pred EEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEE
Q 007111 206 VLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVL 284 (617)
Q Consensus 206 v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vy 284 (617)
+.. ++.+|+.+... ..+++||+.......+.... .......+.+.. ++.||+....++ ..|.+|
T Consensus 170 ~~~~~g~l~v~~~~~-----~~i~~~~~~g~~~~~~~~~g-----~~~~p~~i~~d~--~G~l~v~~~~~~---~~i~~~ 234 (286)
T 1q7f_A 170 VVNDKQEIFISDNRA-----HCVKVFNYEGQYLRQIGGEG-----ITNYPIGVGINS--NGEILIADNHNN---FNLTIF 234 (286)
T ss_dssp EECSSSEEEEEEGGG-----TEEEEEETTCCEEEEESCTT-----TSCSEEEEEECT--TCCEEEEECSSS---CEEEEE
T ss_pred EECCCCCEEEEECCC-----CEEEEEcCCCCEEEEEccCC-----ccCCCcEEEECC--CCCEEEEeCCCC---EEEEEE
Confidence 333 57898876432 46899998765544443110 011223344432 356777664321 268888
Q ss_pred ECCCC
Q 007111 285 SIEKN 289 (617)
Q Consensus 285 d~~~~ 289 (617)
|+...
T Consensus 235 ~~~g~ 239 (286)
T 1q7f_A 235 TQDGQ 239 (286)
T ss_dssp CTTSC
T ss_pred CCCCC
Confidence 86543
No 164
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=94.22 E-value=4.2 Score=39.17 Aligned_cols=177 Identities=9% Similarity=0.005 Sum_probs=94.5
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..+.+||+. .++..... +.....-++++.. ++++|+.+.. ...+++||+. ........
T Consensus 83 ~~v~~~d~~-g~~~~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~~~-- 141 (300)
T 2qc5_A 83 NKIGKLSKK-GGFTEYPL-----------PQPDSGPYGITEGLNGDIWFTQLN------GDRIGKLTAD-GTIYEYDL-- 141 (300)
T ss_dssp TEEEEECTT-SCEEEEEC-----------SSTTCCEEEEEECSTTCEEEEETT------TTEEEEECTT-SCEEEEEC--
T ss_pred CeEEEECCC-CCeEEecC-----------CCCCCCCccceECCCCCEEEEccC------CCeEEEECCC-CCEEEccC--
Confidence 357888877 66654432 1111122444444 5788877532 1369999988 66655431
Q ss_pred CCC-CCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEEC-CcEEEEEccCC
Q 007111 93 DIP-VARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSS 169 (617)
Q Consensus 93 ~~P-~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~-~~~LyV~GG~~ 169 (617)
+ .....+.++.. ++.+|+.... ...+++||+ +.++..+.. |..........++ +..+|+.....
T Consensus 142 --~~~~~~~~~i~~d~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~~----~~~~~~~~~i~~d~~g~l~v~~~~~ 208 (300)
T 2qc5_A 142 --PNKGSYPAFITLGSDNALWFTENQ------NNSIGRITN-TGKLEEYPL----PTNAAAPVGITSGNDGALWFVEIMG 208 (300)
T ss_dssp --SSTTCCEEEEEECTTSSEEEEETT------TTEEEEECT-TCCEEEEEC----SSTTCCEEEEEECTTSSEEEEETTT
T ss_pred --CCCCCCceeEEECCCCCEEEEecC------CCeEEEECC-CCcEEEeeC----CCCCCCcceEEECCCCCEEEEccCC
Confidence 2 12233344443 4677775421 246899998 677776532 2211122233332 33377764322
Q ss_pred CCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc-eEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEe
Q 007111 170 KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 240 (617)
Q Consensus 170 ~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~-ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l 240 (617)
+.+++||+ ++.+...... ..... .+++.. ++.+|+..... +.+.+||+ +......
T Consensus 209 -----~~i~~~~~-~g~~~~~~~~----~~~~~~~~i~~d~~g~l~v~~~~~-----~~i~~~~~-~g~~~~~ 265 (300)
T 2qc5_A 209 -----NKIGRITT-TGEISEYDIP----TPNARPHAITAGKNSEIWFTEWGA-----NQIGRITN-DNTIQEY 265 (300)
T ss_dssp -----TEEEEECT-TCCEEEEECS----STTCCEEEEEECSTTCEEEEETTT-----TEEEEECT-TSCEEEE
T ss_pred -----CEEEEEcC-CCcEEEEECC----CCCCCceEEEECCCCCEEEeccCC-----CeEEEECC-CCcEEEE
Confidence 35999998 6677665432 11222 233333 56788876322 45889998 4555554
No 165
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=94.19 E-value=0.95 Score=44.91 Aligned_cols=159 Identities=16% Similarity=0.131 Sum_probs=78.3
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CC-EEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~-~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
++++|+.++.. ..++++|+.+.+....-. .+.....+.++.. ++ .+|+.++. ...+++||+.+
T Consensus 10 ~~~~~v~~~~~------~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~~~v~~~~------~~~i~~~d~~t 74 (349)
T 1jmx_B 10 GHEYMIVTNYP------NNLHVVDVASDTVYKSCV---MPDKFGPGTAMMAPDNRTAYVLNNH------YGDIYGIDLDT 74 (349)
T ss_dssp TCEEEEEEETT------TEEEEEETTTTEEEEEEE---CSSCCSSCEEEECTTSSEEEEEETT------TTEEEEEETTT
T ss_pred CCEEEEEeCCC------CeEEEEECCCCcEEEEEe---cCCCCCCceeEECCCCCEEEEEeCC------CCcEEEEeCCC
Confidence 66788887652 379999999887543321 2221112233333 33 67776532 35699999998
Q ss_pred CcEEEeecCCCCCC--CCcccEEEEE-CCcEEEEEccC---CCC---CCCCeEEEEECCCCcEEEeecCCCCCCCCcceE
Q 007111 134 LTWLPLHCTGTGPS--PRSNHVAALY-DDKNLLIFGGS---SKS---KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCC 204 (617)
Q Consensus 134 ~~W~~l~~~g~~P~--~R~~h~a~~~-~~~~LyV~GG~---~~~---~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha 204 (617)
.+....-..+..|. ...-+.+++. +++++|+.+.. ... ...+.+++||+.++.-....... +.++...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~ 152 (349)
T 1jmx_B 75 CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF--PMPRQVYL 152 (349)
T ss_dssp TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE--ECCSSCCC
T ss_pred CcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec--cCCCcccc
Confidence 87553211111110 1111233333 45546655421 000 01257999999774321111000 11222223
Q ss_pred EEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEE
Q 007111 205 GVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSV 239 (617)
Q Consensus 205 ~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~ 239 (617)
++.. ++++|+.++ ++++||+.+.....
T Consensus 153 ~~~s~dg~l~~~~~--------~i~~~d~~~~~~~~ 180 (349)
T 1jmx_B 153 MRAADDGSLYVAGP--------DIYKMDVKTGKYTV 180 (349)
T ss_dssp EEECTTSCEEEESS--------SEEEECTTTCCEEE
T ss_pred eeECCCCcEEEccC--------cEEEEeCCCCceec
Confidence 3332 556777432 28888887765443
No 166
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=94.15 E-value=1.6 Score=45.02 Aligned_cols=153 Identities=14% Similarity=0.073 Sum_probs=75.5
Q ss_pred EEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcE
Q 007111 58 KVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTW 136 (617)
Q Consensus 58 ~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W 136 (617)
.+++.|+.+ ..+.+||+.+......-. .......-.+++.. ++.+++.|+.+ ..+.+||+.+.+-
T Consensus 145 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~ 210 (402)
T 2aq5_A 145 NVLLSAGCD------NVILVWDVGTGAAVLTLG--PDVHPDTIYSVDWSRDGALICTSCRD------KRVRVIEPRKGTV 210 (402)
T ss_dssp TEEEEEETT------SCEEEEETTTTEEEEEEC--TTTCCSCEEEEEECTTSSCEEEEETT------SEEEEEETTTTEE
T ss_pred CEEEEEcCC------CEEEEEECCCCCccEEEe--cCCCCCceEEEEECCCCCEEEEEecC------CcEEEEeCCCCce
Confidence 577777753 248889998876543320 00111111222222 56677777654 3589999988764
Q ss_pred EEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcE-EEeecCCCCCCCCcceEEEEE--CCEEE
Q 007111 137 LPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW-TRIKIRGFHPSPRAGCCGVLC--GTKWY 213 (617)
Q Consensus 137 ~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W-~~~~~~g~~P~~R~~ha~v~~--~~~Iy 213 (617)
...-..+ ........++...+..+++.|.... .-..+.+||+.+..- ...... .......+++.. +..+|
T Consensus 211 ~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~~~--~d~~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~ 283 (402)
T 2aq5_A 211 VAEKDRP--HEGTRPVHAVFVSEGKILTTGFSRM--SERQVALWDTKHLEEPLSLQEL---DTSSGVLLPFFDPDTNIVY 283 (402)
T ss_dssp EEEEECS--SCSSSCCEEEECSTTEEEEEEECTT--CCEEEEEEETTBCSSCSEEEEC---CCCSSCEEEEEETTTTEEE
T ss_pred eeeeccC--CCCCcceEEEEcCCCcEEEEeccCC--CCceEEEEcCccccCCceEEec---cCCCceeEEEEcCCCCEEE
Confidence 4321011 1111122344444443666662100 124689999876432 111111 111112233333 44566
Q ss_pred EEecCCCCCccceEEEEECCCCc
Q 007111 214 IAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 214 I~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
+.|+..+ .+.+||+.+..
T Consensus 284 ~~g~~dg-----~i~i~d~~~~~ 301 (402)
T 2aq5_A 284 LCGKGDS-----SIRYFEITSEA 301 (402)
T ss_dssp EEETTCS-----CEEEEEECSST
T ss_pred EEEcCCC-----eEEEEEecCCC
Confidence 6665443 47888887765
No 167
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=94.15 E-value=0.52 Score=41.44 Aligned_cols=98 Identities=20% Similarity=0.265 Sum_probs=57.7
Q ss_pred CchHHHHHHHHHHH-------HHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 007111 464 PSSIYQFYESKMAA-------LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLEL 536 (617)
Q Consensus 464 ~~~~~~~~~~~~~~-------~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~ 536 (617)
++.++..|+..|.. +...++.|+.|++.+....+.-.++...-+.-|+.+|..+...-|++...--.-..+|.
T Consensus 11 ~~~~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~ 90 (119)
T 3ol1_A 11 MSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLER 90 (119)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHH
Confidence 35566666665554 45567777777777777666666666555666777776665555544332111112210
Q ss_pred hHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhh
Q 007111 537 AQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHS 575 (617)
Q Consensus 537 ~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (617)
- | -.|..|+.|||.+.++-=+||++
T Consensus 91 ~----------i----esL~eEl~FLKk~heeEl~eLq~ 115 (119)
T 3ol1_A 91 K----------V----ESLQEEIAFLKKLHEEEIQELQA 115 (119)
T ss_dssp H----------H----HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred H----------H----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1 13557899999999876666654
No 168
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=94.14 E-value=4.5 Score=39.27 Aligned_cols=150 Identities=11% Similarity=0.131 Sum_probs=70.2
Q ss_pred CEEEEEcccCCCCCCceEEEEEECCCC-------cEEEeeccCCCCCCcceeEEEEE--C--CEEEEEeecCCCCCccCe
Q 007111 57 KKVLLVGGKTDSGSDRVSVWTFDTETE-------CWSVVEAKGDIPVARSGHTVVRA--S--SVLILFGGEDGKRRKLND 125 (617)
Q Consensus 57 ~~lyV~GG~~~~~~~~~~v~~yd~~t~-------~W~~~~~~g~~P~~R~~~s~~~~--~--~~IYv~GG~~~~~~~~~~ 125 (617)
+.+++.|+.+. .+.+||+.+. .|..+.. +.........+.+ + +.+++.|+.++ .
T Consensus 71 ~~~l~s~~~dg------~v~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg------~ 135 (351)
T 3f3f_A 71 GRIIASASYDK------TVKLWEEDPDQEECSGRRWNKLCT---LNDSKGSLYSVKFAPAHLGLKLACLGNDG------I 135 (351)
T ss_dssp CSEEEEEETTS------CEEEEEECTTSCTTSSCSEEEEEE---ECCCSSCEEEEEECCGGGCSEEEEEETTC------E
T ss_pred CCEEEEEcCCC------eEEEEecCCCcccccccCcceeee---ecccCCceeEEEEcCCCCCcEEEEecCCC------c
Confidence 66777777632 3666666553 3444432 1111122222222 2 56677776543 4
Q ss_pred EEEEECCCCc----EEEe---ecCCCCCCCC-cccEEEEE-C----CcEEEEEccCCCCCCCCeEEEEECCCCcEEEeec
Q 007111 126 LHMFDLKSLT----WLPL---HCTGTGPSPR-SNHVAALY-D----DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 192 (617)
Q Consensus 126 v~~yD~~t~~----W~~l---~~~g~~P~~R-~~h~a~~~-~----~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~ 192 (617)
+.+||+.+.. |... ......+... ....+..+ . +. +++.|+.++ .+..++.....+..+..
T Consensus 136 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~-----~~~~~~~~~~~~~~~~~ 209 (351)
T 3f3f_A 136 LRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPE-KLAVSALEQ-----AIIYQRGKDGKLHVAAK 209 (351)
T ss_dssp EEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCC-EEEEEETTE-----EEEEEECTTSCEEEEEE
T ss_pred EEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCc-EEEEecCCC-----cEEEEccCCCceeeeee
Confidence 8888887653 3211 1000111111 11122222 2 45 677777653 25556666666655544
Q ss_pred CCCCCCCCcceEEEEE-CC----EEEEEecCCCCCccceEEEEECCC
Q 007111 193 RGFHPSPRAGCCGVLC-GT----KWYIAGGGSRKKRHAETLIFDILK 234 (617)
Q Consensus 193 ~g~~P~~R~~ha~v~~-~~----~IyI~GG~s~~~~~~~v~~yDl~~ 234 (617)
.... ...-.+++.. ++ .+++.|+..+. +.+||+..
T Consensus 210 ~~~h--~~~i~~~~~~p~~~~~~~~l~s~~~dg~-----i~iwd~~~ 249 (351)
T 3f3f_A 210 LPGH--KSLIRSISWAPSIGRWYQLIATGCKDGR-----IRIFKITE 249 (351)
T ss_dssp CCCC--CSCEEEEEECCCSSCSSEEEEEEETTSC-----EEEEEEEE
T ss_pred cCCC--CcceeEEEECCCCCCcceEEEEEcCCCe-----EEEEeCCC
Confidence 3111 1112233333 33 67777776543 55666543
No 169
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=94.10 E-value=8.9 Score=42.50 Aligned_cols=122 Identities=15% Similarity=0.164 Sum_probs=66.9
Q ss_pred EEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEeeccCCCCCCcc---eeEEEEECCEEEEEeecCCCCCccCeE
Q 007111 52 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIPVARS---GHTVVRASSVLILFGGEDGKRRKLNDL 126 (617)
Q Consensus 52 ~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~P~~R~---~~s~~~~~~~IYv~GG~~~~~~~~~~v 126 (617)
-++.++.||+.+.. ..++.+|..+.+ |+.-..........+ ..+.++.++.||+.. ....+
T Consensus 64 P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t-------~dg~l 129 (582)
T 1flg_A 64 AIVSDGVIYVTASY-------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGT-------LDASV 129 (582)
T ss_dssp CEEETTEEEEEETT-------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEE-------TTTEE
T ss_pred cEEECCEEEEEcCC-------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEe-------CCCEE
Confidence 35679999998763 139999998775 877542111000111 123456788888753 12469
Q ss_pred EEEECCCCc--EEEeecCCCCCCCCc--ccEEEEECC----cEEEEEccCCC-CCCCCeEEEEECCCCc--EEEe
Q 007111 127 HMFDLKSLT--WLPLHCTGTGPSPRS--NHVAALYDD----KNLLIFGGSSK-SKTLNDLYSLDFETMI--WTRI 190 (617)
Q Consensus 127 ~~yD~~t~~--W~~l~~~g~~P~~R~--~h~a~~~~~----~~LyV~GG~~~-~~~~n~v~~yD~~t~~--W~~~ 190 (617)
+.+|..+.+ |+.-. +. +...+ ..+-++.++ +.++++|.... ...-..++.||+.+++ |+..
T Consensus 130 ~AlD~~TG~~~W~~~~--~~-~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~ 201 (582)
T 1flg_A 130 VALNKNTGKVVWKKKF--AD-HGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRP 201 (582)
T ss_dssp EEEESSSCCEEEEEEC--SC-GGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred EEEECCCCCEEeeecC--CC-CCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecC
Confidence 999998875 98542 11 11111 112233444 21333443211 1123569999998765 8653
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.10 E-value=1.8 Score=43.71 Aligned_cols=203 Identities=9% Similarity=0.044 Sum_probs=99.4
Q ss_pred ceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCE-EEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCC
Q 007111 72 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSV-LILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR 149 (617)
Q Consensus 72 ~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~-IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R 149 (617)
...++++|+.+.....+.. ......+....- ++. |++.. ..........++.+|+.+..+..+. . ..+.
T Consensus 167 ~~~l~~~d~~~g~~~~~~~----~~~~~~~~~~sp~dg~~l~~~~-~~~~~~~~~~l~~~d~~~~~~~~l~---~-~~~~ 237 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIHQ----DTAWLGHPIYRPFDDSTVGFCH-EGPHDLVDARMWLVNEDGSNVRKIK---E-HAEG 237 (396)
T ss_dssp CEEEEEEETTTCCEEEEEE----ESSCEEEEEEETTEEEEEEEEE-CSCSSSCSCCCEEEETTSCCCEESS---C-CCTT
T ss_pred cceEEEEECCCCcEEeecc----CCcccccceECCCCCCEEEEEe-cCCCCCCCceEEEEECCCCceeEee---c-cCCC
Confidence 3479999999988776652 111122222222 344 44443 2222122367999999888887763 1 1111
Q ss_pred cccE-EEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCC------
Q 007111 150 SNHV-AALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSR------ 220 (617)
Q Consensus 150 ~~h~-a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~------ 220 (617)
.... .+.. +++.|++. +.........+++||+.++....+... + ... ....- +++++++++...
T Consensus 238 ~~~~~~~~spdg~~l~~~-~~~~~~~~~~l~~~d~~~g~~~~l~~~---~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~ 310 (396)
T 3c5m_A 238 ESCTHEFWIPDGSAMAYV-SYFKGQTDRVIYKANPETLENEEVMVM---P--PCS-HLMSNFDGSLMVGDGCDAPVDVAD 310 (396)
T ss_dssp EEEEEEEECTTSSCEEEE-EEETTTCCEEEEEECTTTCCEEEEEEC---C--SEE-EEEECSSSSEEEEEECCC------
T ss_pred ccccceEECCCCCEEEEE-ecCCCCccceEEEEECCCCCeEEeeeC---C--CCC-CCccCCCCceEEEecCCcceeecc
Confidence 1111 2222 45534433 322222223499999999887776543 2 111 11222 566666544210
Q ss_pred -----CCccceEEEEECCCCcEEEeecCCCCC----CCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 221 -----KKRHAETLIFDILKGEWSVAITSPSSS----VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 221 -----~~~~~~v~~yDl~~~~W~~l~~~~~~~----p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
......++++|+.+.....+....... ...........+.. +...|++.....+ ...+|.+++.+..+
T Consensus 311 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~s~~~~--~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 311 ADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTP-NDDGVLFTSDFEG--VPAIYIADVPESYK 387 (396)
T ss_dssp ----CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECT-TSSEEEEEECTTS--SCEEEEEECCTTCC
T ss_pred ccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEcc-CCCeEEEEecCCC--CceEEEEEEccccc
Confidence 112357999999887766654322100 00000011112322 2344554443332 34789999887765
Q ss_pred cc
Q 007111 292 SM 293 (617)
Q Consensus 292 ~~ 293 (617)
+.
T Consensus 388 ~~ 389 (396)
T 3c5m_A 388 HL 389 (396)
T ss_dssp --
T ss_pred cc
Confidence 43
No 171
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=93.98 E-value=5.3 Score=39.47 Aligned_cols=178 Identities=8% Similarity=0.051 Sum_probs=91.1
Q ss_pred ceEEEEECCCCc--EEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCC-cEEEeec
Q 007111 14 DDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETE-CWSVVEA 90 (617)
Q Consensus 14 ~~v~~yd~~t~~--W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~ 90 (617)
..++++|+.+.+ |+.-... .....+..+.-++++|+.+. ..++.||+... .|+...
T Consensus 15 ~~v~~~d~~tG~~~w~~~~~~------------~~~~~~~~~~pdG~ilvs~~--------~~V~~~d~~G~~~W~~~~- 73 (276)
T 3no2_A 15 NKIAIINKDTKEIVWEYPLEK------------GWECNSVAATKAGEILFSYS--------KGAKMITRDGRELWNIAA- 73 (276)
T ss_dssp SEEEEEETTTTEEEEEEECCT------------TCCCCEEEECTTSCEEEECB--------SEEEEECTTSCEEEEEEC-
T ss_pred CEEEEEECCCCeEEEEeCCCc------------cCCCcCeEECCCCCEEEeCC--------CCEEEECCCCCEEEEEcC-
Confidence 468999997765 7654421 01112233334677887321 35999999332 376443
Q ss_pred cCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCc-EEEeecCCCC--CCCCcccEEEEECCcEEEEEc
Q 007111 91 KGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLT-WLPLHCTGTG--PSPRSNHVAALYDDKNLLIFG 166 (617)
Q Consensus 91 ~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~-W~~l~~~g~~--P~~R~~h~a~~~~~~~LyV~G 166 (617)
+.....+++... ++.+++..+.. ...++.+|+.... |+.- ..+.. +...........++. +++..
T Consensus 74 ----~~~~~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~-~~~~~~~~~~~~~~v~~~~~G~-~lv~~ 142 (276)
T 3no2_A 74 ----PAGCEMQTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTE-FETGIERPHAQFRQINKNKKGN-YLVPL 142 (276)
T ss_dssp ----CTTCEEEEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEE-ECCSCSSGGGSCSCCEECTTSC-EEEEE
T ss_pred ----CCCccccccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEe-ccCCCCcccccccCceECCCCC-EEEEe
Confidence 211122333333 45665554321 2357888885543 5432 11121 111122233334566 55544
Q ss_pred cCCCCCCCCeEEEEECCCC-cEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCC--cEEEe
Q 007111 167 GSSKSKTLNDLYSLDFETM-IWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKG--EWSVA 240 (617)
Q Consensus 167 G~~~~~~~n~v~~yD~~t~-~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~--~W~~l 240 (617)
..+ ..+..||++.. .|+.-.. ..+ +++... ++.++|++... ..++.+|+.+. .|+.-
T Consensus 143 ~~~-----~~v~~~d~~G~~~w~~~~~----~~~---~~~~~~~~g~~~v~~~~~-----~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 143 FAT-----SEVREIAPNGQLLNSVKLS----GTP---FSSAFLDNGDCLVACGDA-----HCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp TTT-----TEEEEECTTSCEEEEEECS----SCC---CEEEECTTSCEEEECBTT-----SEEEEECTTTCCEEEEEE
T ss_pred cCC-----CEEEEECCCCCEEEEEECC----CCc---cceeEcCCCCEEEEeCCC-----CeEEEEeCcCCcEEEEec
Confidence 322 35999999732 2543221 111 233444 77888876643 35899999854 47764
No 172
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=93.97 E-value=4.8 Score=38.96 Aligned_cols=197 Identities=9% Similarity=0.055 Sum_probs=101.4
Q ss_pred eEEEEE--CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeE
Q 007111 50 HSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDL 126 (617)
Q Consensus 50 hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v 126 (617)
++++.. ++++|+.+... ...+.+||........+.. +.....+.++.. ++.+|+.... ...+
T Consensus 80 ~~i~~~~~~g~l~v~~~~~-----~~~i~~~d~~g~~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~------~~~i 144 (286)
T 1q7f_A 80 NRVAVVRNSGDIIVTERSP-----THQIQIYNQYGQFVRKFGA----TILQHPRGVTVDNKGRIIVVECK------VMRV 144 (286)
T ss_dssp EEEEEETTTTEEEEEECGG-----GCEEEEECTTSCEEEEECT----TTCSCEEEEEECTTSCEEEEETT------TTEE
T ss_pred eEEEEEcCCCeEEEEcCCC-----CCEEEEECCCCcEEEEecC----ccCCCceEEEEeCCCCEEEEECC------CCEE
Confidence 344442 67899886321 1368999965554444431 222223344443 4678886532 2568
Q ss_pred EEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEE
Q 007111 127 HMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGV 206 (617)
Q Consensus 127 ~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v 206 (617)
++||+.......+...+.+.. -..+++..+..+|+.+..+ +.|++||+.......+...+.. ..-.+++
T Consensus 145 ~~~~~~g~~~~~~~~~~~~~~---p~~i~~~~~g~l~v~~~~~-----~~i~~~~~~g~~~~~~~~~g~~---~~p~~i~ 213 (286)
T 1q7f_A 145 IIFDQNGNVLHKFGCSKHLEF---PNGVVVNDKQEIFISDNRA-----HCVKVFNYEGQYLRQIGGEGIT---NYPIGVG 213 (286)
T ss_dssp EEECTTSCEEEEEECTTTCSS---EEEEEECSSSEEEEEEGGG-----TEEEEEETTCCEEEEESCTTTS---CSEEEEE
T ss_pred EEEcCCCCEEEEeCCCCccCC---cEEEEECCCCCEEEEECCC-----CEEEEEcCCCCEEEEEccCCcc---CCCcEEE
Confidence 999987665554431111111 1233333333488875433 4599999866544444322111 1112333
Q ss_pred EE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEE
Q 007111 207 LC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLS 285 (617)
Q Consensus 207 ~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd 285 (617)
.. ++.+|+...... ..+.+||........+.... .......+.+.. ++.+|+... + +.|.+|+
T Consensus 214 ~d~~G~l~v~~~~~~----~~i~~~~~~g~~~~~~~~~~-----~~~~~~~i~~~~--~g~l~vs~~-~----~~v~v~~ 277 (286)
T 1q7f_A 214 INSNGEILIADNHNN----FNLTIFTQDGQLISALESKV-----KHAQCFDVALMD--DGSVVLASK-D----YRLYIYR 277 (286)
T ss_dssp ECTTCCEEEEECSSS----CEEEEECTTSCEEEEEEESS-----CCSCEEEEEEET--TTEEEEEET-T----TEEEEEE
T ss_pred ECCCCCEEEEeCCCC----EEEEEECCCCCEEEEEcccC-----CCCcceeEEECC--CCcEEEECC-C----CeEEEEE
Confidence 33 678888865431 15889997665444443211 111122333432 356887742 2 4788887
Q ss_pred CCC
Q 007111 286 IEK 288 (617)
Q Consensus 286 ~~~ 288 (617)
...
T Consensus 278 ~~~ 280 (286)
T 1q7f_A 278 YVQ 280 (286)
T ss_dssp CSC
T ss_pred ccc
Confidence 644
No 173
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=93.92 E-value=4.8 Score=38.75 Aligned_cols=213 Identities=10% Similarity=-0.008 Sum_probs=112.1
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..+.+||+. .++..... | .....-++++.. ++.+|+.... ...+++||+. ..+.......
T Consensus 41 ~~v~~~~~~-~~~~~~~~-----~------~~~~~~~~i~~~~~g~l~v~~~~------~~~v~~~d~~-g~~~~~~~~~ 101 (300)
T 2qc5_A 41 NKISSLDQS-GRIKEFEV-----P------TPDAKVMCLIVSSLGDIWFTENG------ANKIGKLSKK-GGFTEYPLPQ 101 (300)
T ss_dssp TEEEEECTT-SCEEEEEC-----S------STTCCEEEEEECTTSCEEEEETT------TTEEEEECTT-SCEEEEECSS
T ss_pred CeEEEECCC-CceEEEEC-----C------CCCCcceeEEECCCCCEEEEecC------CCeEEEECCC-CCeEEecCCC
Confidence 457888887 66655432 0 011112344443 4678887532 1369999998 7776554211
Q ss_pred CCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCC-CcccEEEEE-CCcEEEEEccCC
Q 007111 93 DIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSP-RSNHVAALY-DDKNLLIFGGSS 169 (617)
Q Consensus 93 ~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~-R~~h~a~~~-~~~~LyV~GG~~ 169 (617)
.....+.++.. ++.+|+.... ...+++||+. .+..... ++.. ..-+.++.. +++ +|+.....
T Consensus 102 ---~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~~----~~~~~~~~~~i~~d~~g~-l~v~~~~~ 166 (300)
T 2qc5_A 102 ---PDSGPYGITEGLNGDIWFTQLN------GDRIGKLTAD-GTIYEYD----LPNKGSYPAFITLGSDNA-LWFTENQN 166 (300)
T ss_dssp ---TTCCEEEEEECSTTCEEEEETT------TTEEEEECTT-SCEEEEE----CSSTTCCEEEEEECTTSS-EEEEETTT
T ss_pred ---CCCCCccceECCCCCEEEEccC------CCeEEEECCC-CCEEEcc----CCCCCCCceeEEECCCCC-EEEEecCC
Confidence 12233444443 5688876421 2468999988 6666543 1211 112233333 345 77765322
Q ss_pred CCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc-eEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCC
Q 007111 170 KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSS 247 (617)
Q Consensus 170 ~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~-ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~ 247 (617)
+.+++||+ ++.+..+... ..... ..++.. ++.+|+..... ..+++||+ +..+..... +
T Consensus 167 -----~~i~~~~~-~g~~~~~~~~----~~~~~~~~i~~d~~g~l~v~~~~~-----~~i~~~~~-~g~~~~~~~-~--- 226 (300)
T 2qc5_A 167 -----NSIGRITN-TGKLEEYPLP----TNAAAPVGITSGNDGALWFVEIMG-----NKIGRITT-TGEISEYDI-P--- 226 (300)
T ss_dssp -----TEEEEECT-TCCEEEEECS----STTCCEEEEEECTTSSEEEEETTT-----TEEEEECT-TCCEEEEEC-S---
T ss_pred -----CeEEEECC-CCcEEEeeCC----CCCCCcceEEECCCCCEEEEccCC-----CEEEEEcC-CCcEEEEEC-C---
Confidence 35999999 6777765431 11112 233333 56788875322 35889998 556655432 1
Q ss_pred CCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECC
Q 007111 248 VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 287 (617)
Q Consensus 248 p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~ 287 (617)
........+.+.. ++.||+.... .+.|.+||+.
T Consensus 227 -~~~~~~~~i~~d~--~g~l~v~~~~----~~~i~~~~~~ 259 (300)
T 2qc5_A 227 -TPNARPHAITAGK--NSEIWFTEWG----ANQIGRITND 259 (300)
T ss_dssp -STTCCEEEEEECS--TTCEEEEETT----TTEEEEECTT
T ss_pred -CCCCCceEEEECC--CCCEEEeccC----CCeEEEECCC
Confidence 1112223334432 3457766532 2467888873
No 174
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=93.91 E-value=0.54 Score=41.89 Aligned_cols=88 Identities=27% Similarity=0.320 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccc
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIV 548 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~ 548 (617)
.-++.+...++.....|..||.+-......||..+......+++|+.+|.++...++...+..+.+..+...
T Consensus 37 ~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkk-------- 108 (129)
T 2fxo_A 37 KELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRK-------- 108 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 467888899999999999999999999999999999999999999999999999999988888888766544
Q ss_pred cCCCcchhhhHHHHHHHHHHHH
Q 007111 549 HSDNVRLEHDVAFLKAVLDDTQ 570 (617)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~ 570 (617)
||.++.-|+.-++|..
T Consensus 109 ------le~e~~~Lk~~led~e 124 (129)
T 2fxo_A 109 ------LEDECSELKRDIDDLE 124 (129)
T ss_dssp ------HHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHH
Confidence 5777888887777754
No 175
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=93.86 E-value=5.7 Score=42.69 Aligned_cols=198 Identities=13% Similarity=0.078 Sum_probs=94.3
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCC------cEEEeeccCCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEE
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETE------CWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHM 128 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~------~W~~~~~~g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~ 128 (617)
++++++.|+.+ ..+.+||+.+. ....+... ....... .+++. -++..++.+|.+... ...++.
T Consensus 77 ~~~~l~s~~~d------g~v~vw~~~~~~~~~~~~~~~~~~~-~~~~~~v-~~~~~s~~~~~l~~~~~~~~~--~~~v~~ 146 (615)
T 1pgu_A 77 GSQYLCSGDES------GKVIVWGWTFDKESNSVEVNVKSEF-QVLAGPI-SDISWDFEGRRLCVVGEGRDN--FGVFIS 146 (615)
T ss_dssp TCCEEEEEETT------SEEEEEEEEEEGGGTEEEEEEEEEE-ECCSSCE-EEEEECTTSSEEEEEECCSSC--SEEEEE
T ss_pred CCCEEEEecCC------CEEEEEeCCCCcccccccccccchh-hcccccE-EEEEEeCCCCEEEEeccCCCC--ccEEEE
Confidence 45677777653 25777776543 23322210 0111111 12222 245666777655432 356777
Q ss_pred EECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCC-cceEEE
Q 007111 129 FDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPR-AGCCGV 206 (617)
Q Consensus 129 yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R-~~ha~v 206 (617)
||... .-..+. + .... -.+++.. ++..+++.|+.++ .+..||..+......-.. ..... .-.+++
T Consensus 147 ~d~~~-~~~~~~--~--~~~~-v~~~~~~~~~~~~l~~~~~d~-----~v~vwd~~~~~~~~~~~~--~~~~~~~v~~~~ 213 (615)
T 1pgu_A 147 WDSGN-SLGEVS--G--HSQR-INACHLKQSRPMRSMTVGDDG-----SVVFYQGPPFKFSASDRT--HHKQGSFVRDVE 213 (615)
T ss_dssp TTTCC-EEEECC--S--CSSC-EEEEEECSSSSCEEEEEETTT-----EEEEEETTTBEEEEEECS--SSCTTCCEEEEE
T ss_pred EECCC-cceeee--c--CCcc-EEEEEECCCCCcEEEEEeCCC-----cEEEEeCCCcceeeeecc--cCCCCceEEEEE
Confidence 77321 112221 1 1111 1122222 2333677777653 589999877654433221 11100 223333
Q ss_pred EE-C-CEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEE
Q 007111 207 LC-G-TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVL 284 (617)
Q Consensus 207 ~~-~-~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vy 284 (617)
.. + +..++.|+..+ .+.+||+.+......-..+ ..........+.+. ++.+++.|+.+ ..|.+|
T Consensus 214 ~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~--~~~~~~~v~~~~~~---~~~~l~~~~~d----~~i~~w 279 (615)
T 1pgu_A 214 FSPDSGEFVITVGSDR-----KISCFDGKSGEFLKYIEDD--QEPVQGGIFALSWL---DSQKFATVGAD----ATIRVW 279 (615)
T ss_dssp ECSTTCCEEEEEETTC-----CEEEEETTTCCEEEECCBT--TBCCCSCEEEEEES---SSSEEEEEETT----SEEEEE
T ss_pred ECCCCCCEEEEEeCCC-----eEEEEECCCCCEeEEeccc--ccccCCceEEEEEc---CCCEEEEEcCC----CcEEEE
Confidence 33 4 67777777653 4889998877654422000 00111223333443 24466677654 368888
Q ss_pred ECCCCc
Q 007111 285 SIEKNE 290 (617)
Q Consensus 285 d~~~~~ 290 (617)
|+.+.+
T Consensus 280 d~~~~~ 285 (615)
T 1pgu_A 280 DVTTSK 285 (615)
T ss_dssp ETTTTE
T ss_pred ECCCCc
Confidence 887655
No 176
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=93.63 E-value=3 Score=39.78 Aligned_cols=194 Identities=10% Similarity=-0.042 Sum_probs=97.7
Q ss_pred eEEEEE-CCEEEE-EcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeE
Q 007111 50 HSLISW-GKKVLL-VGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDL 126 (617)
Q Consensus 50 hs~v~~-g~~lyV-~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v 126 (617)
++++.. ++++|+ ..+. ...+++||+.+........ ......++++.. ++.+|+... ...+
T Consensus 27 ~~i~~~~~g~l~v~~~~~------~~~i~~~~~~~~~~~~~~~----~~~~~p~~i~~~~~g~l~v~~~-------~~~i 89 (270)
T 1rwi_B 27 SGVAVDSAGNVYVTSEGM------YGRVVKLATGSTGTTVLPF----NGLYQPQGLAVDGAGTVYVTDF-------NNRV 89 (270)
T ss_dssp EEEEECTTCCEEEEECSS------SCEEEEECC-----EECCC----CSCCSCCCEEECTTCCEEEEET-------TTEE
T ss_pred cceEECCCCCEEEEccCC------CCcEEEecCCCcccceEee----CCcCCcceeEECCCCCEEEEcC-------CCEE
Confidence 344443 567888 4332 2368899987776554431 111222334443 467888754 1368
Q ss_pred EEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEE
Q 007111 127 HMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGV 206 (617)
Q Consensus 127 ~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v 206 (617)
++||+.+.....+.. .....-+.+++..+..+|+..... +.+++||..+......... ....+ ..++
T Consensus 90 ~~~d~~~~~~~~~~~----~~~~~p~~i~~~~~g~l~v~~~~~-----~~i~~~~~~~~~~~~~~~~-~~~~p---~~i~ 156 (270)
T 1rwi_B 90 VTLAAGSNNQTVLPF----DGLNYPEGLAVDTQGAVYVADRGN-----NRVVKLAAGSKTQTVLPFT-GLNDP---DGVA 156 (270)
T ss_dssp EEECTTCSCCEECCC----CSCSSEEEEEECTTCCEEEEEGGG-----TEEEEECTTCCSCEECCCC-SCCSC---CCEE
T ss_pred EEEeCCCceEeeeec----CCcCCCcceEECCCCCEEEEECCC-----CEEEEEECCCceeEeeccc-cCCCc---eeEE
Confidence 999998776554421 111112233333233388875432 3588998776654433221 11112 2333
Q ss_pred EE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEE
Q 007111 207 LC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLS 285 (617)
Q Consensus 207 ~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd 285 (617)
.. ++++|+..... ..+++||+........... .......+.+.. ++.||+....+ +.|.+|+
T Consensus 157 ~~~~g~l~v~~~~~-----~~i~~~~~~~~~~~~~~~~------~~~~p~~i~~d~--~g~l~v~~~~~----~~v~~~~ 219 (270)
T 1rwi_B 157 VDNSGNVYVTDTDN-----NRVVKLEAESNNQVVLPFT------DITAPWGIAVDE--AGTVYVTEHNT----NQVVKLL 219 (270)
T ss_dssp ECTTCCEEEEEGGG-----TEEEEECTTTCCEEECCCS------SCCSEEEEEECT--TCCEEEEETTT----SCEEEEC
T ss_pred EeCCCCEEEEECCC-----CEEEEEecCCCceEeeccc------CCCCceEEEECC--CCCEEEEECCC----CcEEEEc
Confidence 33 56788876432 4588999887654432211 112223334432 34677765432 3688898
Q ss_pred CCCCc
Q 007111 286 IEKNE 290 (617)
Q Consensus 286 ~~~~~ 290 (617)
+....
T Consensus 220 ~~~~~ 224 (270)
T 1rwi_B 220 AGSTT 224 (270)
T ss_dssp TTCSC
T ss_pred CCCCc
Confidence 86643
No 177
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=93.59 E-value=3.6 Score=40.84 Aligned_cols=155 Identities=7% Similarity=-0.051 Sum_probs=83.4
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 134 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~ 134 (617)
++++|+.+... ..+++||+.+..+..+.. +......+++.. ++.+|+.+..+.. ....+++||+.+.
T Consensus 55 ~g~l~~~~~~~------~~i~~~d~~~~~~~~~~~----~~~~~~~~i~~~~dg~l~v~~~~~~~--~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 55 QGQLFLLDVFE------GNIFKINPETKEIKRPFV----SHKANPAAIKIHKDGRLFVCYLGDFK--STGGIFAATENGD 122 (333)
T ss_dssp TSCEEEEETTT------CEEEEECTTTCCEEEEEE----CSSSSEEEEEECTTSCEEEEECTTSS--SCCEEEEECTTSC
T ss_pred CCCEEEEECCC------CEEEEEeCCCCcEEEEee----CCCCCcceEEECCCCcEEEEeCCCCC--CCceEEEEeCCCC
Confidence 56788876542 369999999988876642 111223334433 5678876543311 2357999999888
Q ss_pred cEEEeecCCCCCCCCcccEEEEECCcEEEEEccCC-CCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CC-E
Q 007111 135 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSS-KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT-K 211 (617)
Q Consensus 135 ~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~-~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~-~ 211 (617)
....+.. .......-..++...+..+|+..... .......+++||+.+.....+... ... ...++.. ++ .
T Consensus 123 ~~~~~~~--~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~-~~~i~~~~dg~~ 195 (333)
T 2dg1_A 123 NLQDIIE--DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN----ISV-ANGIALSTDEKV 195 (333)
T ss_dssp SCEEEEC--SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE----ESS-EEEEEECTTSSE
T ss_pred EEEEEEc--cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC----CCc-ccceEECCCCCE
Confidence 7654321 11111111223333333377654321 112235699999988777665331 011 1233333 33 5
Q ss_pred EEEEecCCCCCccceEEEEECCC
Q 007111 212 WYIAGGGSRKKRHAETLIFDILK 234 (617)
Q Consensus 212 IyI~GG~s~~~~~~~v~~yDl~~ 234 (617)
+|+..... ..+++||+.+
T Consensus 196 l~v~~~~~-----~~i~~~d~~~ 213 (333)
T 2dg1_A 196 LWVTETTA-----NRLHRIALED 213 (333)
T ss_dssp EEEEEGGG-----TEEEEEEECT
T ss_pred EEEEeCCC-----CeEEEEEecC
Confidence 77775322 4688999853
No 178
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=93.57 E-value=11 Score=42.64 Aligned_cols=151 Identities=13% Similarity=0.128 Sum_probs=80.5
Q ss_pred ceEEEEEECCCCcE--EEeeccCCCCC-CcceeEEE-EECCEEEEEeecCCCCCccCeEEEEECCCC--c-EEEeecCCC
Q 007111 72 RVSVWTFDTETECW--SVVEAKGDIPV-ARSGHTVV-RASSVLILFGGEDGKRRKLNDLHMFDLKSL--T-WLPLHCTGT 144 (617)
Q Consensus 72 ~~~v~~yd~~t~~W--~~~~~~g~~P~-~R~~~s~~-~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~--~-W~~l~~~g~ 144 (617)
...+|++++.+..- ..+. ..+. +....... .-+++.+++....... ..+++|++|..+. . |..+.. .
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~---~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~l~~--~ 315 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVF---ATPELPKRGHGASVSSDGRWVVITSSEGTD-PVNTVHVARVTNGKIGPVTALIP--D 315 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEE---CCTTCTTCEEEEEECTTSCEEEEEEECTTC-SCCEEEEEEEETTEECCCEEEEC--S
T ss_pred CCEEEEEECCCCchhCEEEe---ccCCCCeEEEEEEECCCCCEEEEEEEccCC-CcceEEEEECCCCCCcccEEecC--C
Confidence 45689999876642 2222 1121 12222222 2245444444333211 3578999999887 6 888741 1
Q ss_pred CCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCC--CcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCC
Q 007111 145 GPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET--MIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK 222 (617)
Q Consensus 145 ~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t--~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~ 222 (617)
.... ...+..++..||+....+ .....++.+|+.+ ..|..+.+.. . .....+...++.+++.....+
T Consensus 316 -~~~~--~~~~~~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~l~~~~--~--~~l~~~~~~~~~lv~~~~~dg-- 384 (741)
T 1yr2_A 316 -LKAQ--WDFVDGVGDQLWFVSGDG--APLKKIVRVDLSGSTPRFDTVVPES--K--DNLESVGIAGNRLFASYIHDA-- 384 (741)
T ss_dssp -SSSC--EEEEEEETTEEEEEECTT--CTTCEEEEEECSSSSCEEEEEECCC--S--SEEEEEEEEBTEEEEEEEETT--
T ss_pred -CCce--EEEEeccCCEEEEEECCC--CCCCEEEEEeCCCCccccEEEecCC--C--CeEEEEEEECCEEEEEEEECC--
Confidence 1111 122234555477765432 2245799999987 5798876431 1 111223444788877765432
Q ss_pred ccceEEEEECCCCcEEEe
Q 007111 223 RHAETLIFDILKGEWSVA 240 (617)
Q Consensus 223 ~~~~v~~yDl~~~~W~~l 240 (617)
...+|.+++....-..+
T Consensus 385 -~~~l~~~~~~g~~~~~l 401 (741)
T 1yr2_A 385 -KSQVLAFDLDGKPAGAV 401 (741)
T ss_dssp -EEEEEEEETTSCEEEEC
T ss_pred -EEEEEEEeCCCCceeec
Confidence 25688999865544443
No 179
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=93.55 E-value=7.5 Score=42.53 Aligned_cols=225 Identities=11% Similarity=0.131 Sum_probs=108.5
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEcccCCCCCCceEEEEEEC--CCCcEEEee
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDT--ETECWSVVE 89 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~--~t~~W~~~~ 89 (617)
+.+.++|..+.+-...-. .... -|+++.. +..+|+.+.. ..+.+||+ .+.+-. .
T Consensus 159 ~~V~v~D~~t~~~~~~i~------------~g~~-~~~v~~spdg~~l~v~~~d-------~~V~v~D~~~~t~~~~--~ 216 (543)
T 1nir_A 159 GQIALVDGDSKKIVKVID------------TGYA-VHISRMSASGRYLLVIGRD-------ARIDMIDLWAKEPTKV--A 216 (543)
T ss_dssp TEEEEEETTTCCEEEEEE------------CSTT-EEEEEECTTSCEEEEEETT-------SEEEEEETTSSSCEEE--E
T ss_pred CeEEEEECCCceEEEEEe------------cCcc-cceEEECCCCCEEEEECCC-------CeEEEEECcCCCCcEE--E
Confidence 468889998876533221 0011 3554333 3466666431 47999999 665432 2
Q ss_pred ccCCCCCCcceeEEEEE-----CCEEEEEeecCCCCCccCeEEEEECCCCcEEE-eecCCC-------CCCCCcccEEEE
Q 007111 90 AKGDIPVARSGHTVVRA-----SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP-LHCTGT-------GPSPRSNHVAAL 156 (617)
Q Consensus 90 ~~g~~P~~R~~~s~~~~-----~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~-l~~~g~-------~P~~R~~h~a~~ 156 (617)
.++.......++.- +++.++.++.. .+.+.+||..+.+-.. ++..+. .|.+|..+.+..
T Consensus 217 ---~i~~g~~p~~va~sp~~~~dg~~l~v~~~~-----~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s 288 (543)
T 1nir_A 217 ---EIKIGIEARSVESSKFKGYEDRYTIAGAYW-----PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS 288 (543)
T ss_dssp ---EEECCSEEEEEEECCSTTCTTTEEEEEEEE-----SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred ---EEecCCCcceEEeCCCcCCCCCEEEEEEcc-----CCeEEEEeccccccceeecccCcccCccccccCCceEEEEEC
Confidence 12222223333332 44444444332 3468899988876433 221110 022232222222
Q ss_pred ECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE-EEEEecCCCCCccceEEEEECCC
Q 007111 157 YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK-WYIAGGGSRKKRHAETLIFDILK 234 (617)
Q Consensus 157 ~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~-IyI~GG~s~~~~~~~v~~yDl~~ 234 (617)
.++..+|+.+..+ +.|+.+|..+.....+... +..+.-+.++.. +++ +|+.+..+ +.+.++|..+
T Consensus 289 ~~~~~~~vs~~~~-----g~i~vvd~~~~~~l~~~~i---~~~~~~~~~~~spdg~~l~va~~~~-----~~v~v~D~~t 355 (543)
T 1nir_A 289 HEHPEFIVNVKET-----GKVLLVNYKDIDNLTVTSI---GAAPFLHDGGWDSSHRYFMTAANNS-----NKVAVIDSKD 355 (543)
T ss_dssp SSSSEEEEEETTT-----TEEEEEECTTSSSCEEEEE---ECCSSCCCEEECTTSCEEEEEEGGG-----TEEEEEETTT
T ss_pred CCCCEEEEEECCC-----CeEEEEEecCCCcceeEEe---ccCcCccCceECCCCCEEEEEecCC-----CeEEEEECCC
Confidence 3355455554332 4699999876432111111 112222233333 444 55544322 4688899998
Q ss_pred CcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 235 GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 235 ~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
.+-...... ...|.+..+.. .+ ..+.+.+|+.+... -+.|-++|..+
T Consensus 356 g~l~~~i~~-g~~ph~g~g~~--~~-~p~~g~~~~s~~~~---d~~V~v~d~~~ 402 (543)
T 1nir_A 356 RRLSALVDV-GKTPHPGRGAN--FV-HPKYGPVWSTSHLG---DGSISLIGTDP 402 (543)
T ss_dssp TEEEEEEEC-SSSBCCTTCEE--EE-ETTTEEEEEEEBSS---SSEEEEEECCT
T ss_pred CeEEEeecc-CCCCCCCCCcc--cC-CCCCccEEEeccCC---CceEEEEEeCC
Confidence 865443211 12233222222 22 33346778776532 23688888876
No 180
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=93.53 E-value=5.7 Score=47.48 Aligned_cols=220 Identities=14% Similarity=0.050 Sum_probs=106.0
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 93 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~ 93 (617)
.+.+||..+......-. .....-.+++.. ++.+++.||.+ ..+.+||+.+......-.
T Consensus 638 ~i~vw~~~~~~~~~~~~------------~h~~~v~~~~~s~~~~~l~s~~~d------~~v~vwd~~~~~~~~~~~--- 696 (1249)
T 3sfz_A 638 TLQVFKAETGEKLLDIK------------AHEDEVLCCAFSSDDSYIATCSAD------KKVKIWDSATGKLVHTYD--- 696 (1249)
T ss_dssp CEEEEETTTCCEEEEEC------------CCSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTCCEEEEEE---
T ss_pred eEEEEECCCCCEEEEec------------cCCCCEEEEEEecCCCEEEEEeCC------CeEEEEECCCCceEEEEc---
Confidence 58889988776432211 001111222222 55666777652 258899998876433321
Q ss_pred CCCCcceeEEEEE----CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccC
Q 007111 94 IPVARSGHTVVRA----SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGS 168 (617)
Q Consensus 94 ~P~~R~~~s~~~~----~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~ 168 (617)
.......++.+ ++.+++.|+.++ .+.+||+.+......-. + .... -.+++.. ++. +++.|+.
T Consensus 697 --~~~~~v~~~~~~~~~~~~~l~sg~~d~------~v~vwd~~~~~~~~~~~-~--h~~~-v~~~~~sp~~~-~l~s~s~ 763 (1249)
T 3sfz_A 697 --EHSEQVNCCHFTNKSNHLLLATGSNDF------FLKLWDLNQKECRNTMF-G--HTNS-VNHCRFSPDDE-LLASCSA 763 (1249)
T ss_dssp --CCSSCEEEEEECSSSSCCEEEEEETTS------CEEEEETTSSSEEEEEC-C--CSSC-EEEEEECSSTT-EEEEEES
T ss_pred --CCCCcEEEEEEecCCCceEEEEEeCCC------eEEEEECCCcchhheec-C--CCCC-EEEEEEecCCC-EEEEEEC
Confidence 11112222222 234555555443 48899998877543311 1 1111 1122233 455 7777776
Q ss_pred CCCCCCCeEEEEECCCCcEEEeecCCC-------CCC--CCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEE
Q 007111 169 SKSKTLNDLYSLDFETMIWTRIKIRGF-------HPS--PRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWS 238 (617)
Q Consensus 169 ~~~~~~n~v~~yD~~t~~W~~~~~~g~-------~P~--~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~ 238 (617)
++ .+..||+.+........... ++. .....+++.. ++..+++++. +.+.+||+.+....
T Consensus 764 dg-----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~------~~v~~~d~~~~~~~ 832 (1249)
T 3sfz_A 764 DG-----TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK------NKVLLFDIHTSGLL 832 (1249)
T ss_dssp SS-----EEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET------TEEEEEETTTCCEE
T ss_pred CC-----eEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcC------CcEEEEEecCCCce
Confidence 64 48899987765443322110 000 0011111222 4555555542 46889998887654
Q ss_pred EeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 239 VAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 239 ~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
....... ......+.+.. .+.++++|+.++ .|.+||..+..
T Consensus 833 ~~~~~~~-----~~~v~~~~~sp--~~~~l~~~~~dg----~v~vwd~~~~~ 873 (1249)
T 3sfz_A 833 AEIHTGH-----HSTIQYCDFSP--YDHLAVIALSQY----CVELWNIDSRL 873 (1249)
T ss_dssp EEEECSS-----SSCCCEEEECS--STTEEEEECSSS----CEEEEETTTTE
T ss_pred eEEcCCC-----CCceEEEEEcC--CCCEEEEEeCCC----eEEEEEcCCCc
Confidence 4332111 11222233332 234566666543 47777776543
No 181
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=93.46 E-value=7.3 Score=39.40 Aligned_cols=208 Identities=11% Similarity=0.137 Sum_probs=104.1
Q ss_pred CCcEEEccccccCCCCCCCCCCCcccceEEEE-ECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCccee
Q 007111 23 RFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGH 101 (617)
Q Consensus 23 t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~-~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~ 101 (617)
..+|..+... ...|.. .+.++. -++.+|+.|.. ..+++-.-.-.+|+.+.. +....-+
T Consensus 108 G~tW~~~~~~---------~~~~~~-~~~i~~~~~~~~~~~~~~-------g~v~~S~DgG~tW~~~~~----~~~~~~~ 166 (327)
T 2xbg_A 108 GQSWSQIPLD---------PKLPGS-PRLIKALGNGSAEMITNV-------GAIYRTKDSGKNWQALVQ----EAIGVMR 166 (327)
T ss_dssp TSSCEECCCC---------TTCSSC-EEEEEEEETTEEEEEETT-------CCEEEESSTTSSEEEEEC----SCCCCEE
T ss_pred CCCceECccc---------cCCCCC-eEEEEEECCCCEEEEeCC-------ccEEEEcCCCCCCEEeec----CCCcceE
Confidence 4578887641 112222 233443 46788887742 136655445678999873 2222334
Q ss_pred EEEEE-CCEEEEEeecCCCCCccCeEEEEECC-CCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEE
Q 007111 102 TVVRA-SSVLILFGGEDGKRRKLNDLHMFDLK-SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYS 179 (617)
Q Consensus 102 s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~-t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~ 179 (617)
.++.. ++.+|++| ..+ .+++-+-. ..+|+.+. .+.+..-+.++...+..+|+.+... .+++
T Consensus 167 ~~~~~~~~~~~~~g-~~G------~~~~S~d~gG~tW~~~~----~~~~~~~~~~~~~~~g~~~~~~~~G------~~~~ 229 (327)
T 2xbg_A 167 NLNRSPSGEYVAVS-SRG------SFYSTWEPGQTAWEPHN----RTTSRRLHNMGFTPDGRLWMIVNGG------KIAF 229 (327)
T ss_dssp EEEECTTSCEEEEE-TTS------SEEEEECTTCSSCEEEE----CCSSSCEEEEEECTTSCEEEEETTT------EEEE
T ss_pred EEEEcCCCcEEEEE-CCC------cEEEEeCCCCCceeECC----CCCCCccceeEECCCCCEEEEeCCc------eEEE
Confidence 44443 45666655 221 24554333 57899884 2333444444444333377776421 2555
Q ss_pred EECC-CCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEE
Q 007111 180 LDFE-TMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLV 257 (617)
Q Consensus 180 yD~~-t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v 257 (617)
.+.. ..+|+.+.. +..+.....++++.. ++.+|++|+.. .+++-.-...+|+.+..... .+...++++
T Consensus 230 s~~D~G~tW~~~~~-~~~~~~~~~~~v~~~~~~~~~~~g~~g------~i~~S~DgG~tW~~~~~~~~---~~~~~~~v~ 299 (327)
T 2xbg_A 230 SDPDNSENWGELLS-PLRRNSVGFLDLAYRTPNEVWLAGGAG------ALLCSQDGGQTWQQDVDVKK---VPSNFYKIL 299 (327)
T ss_dssp EETTEEEEECCCBC-TTSSCCSCEEEEEESSSSCEEEEESTT------CEEEESSTTSSCEECGGGTT---SSSCCCEEE
T ss_pred ecCCCCCeeEeccC-CcccCCcceEEEEecCCCEEEEEeCCC------eEEEeCCCCcccEEcCccCC---CCCCeEEEE
Confidence 5433 568987653 111222233444444 56888887631 24433333568998753211 111223333
Q ss_pred EEeecCCcEEEEEcCCCCCCCCeEEEEEC
Q 007111 258 LVQHKEKDFLVAFGGIKKEPSNQVEVLSI 286 (617)
Q Consensus 258 ~v~~~~~~~L~I~GG~~~~~~~dV~vyd~ 286 (617)
... .+.++++|.. + .|+.++.
T Consensus 300 ~~~---~~~~~~~G~~-G----~i~~~~~ 320 (327)
T 2xbg_A 300 FFS---PDQGFILGQK-G----ILLRYVT 320 (327)
T ss_dssp EEE---TTEEEEECST-T----EEEEECC
T ss_pred EEC---CCceEEEcCC-c----eEEEEcC
Confidence 332 3556666643 2 5666664
No 182
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=93.42 E-value=6.5 Score=44.49 Aligned_cols=208 Identities=13% Similarity=0.062 Sum_probs=106.0
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCC--------CCccCeEE
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK--------RRKLNDLH 127 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~--------~~~~~~v~ 127 (617)
+++.++|+... .+.....++++|+.++.+..... +.... ...+...++.++++..+.. ......++
T Consensus 173 DG~~la~~~~~-~G~e~~~i~v~dl~tg~~~~~~~----~~~~~-~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~ 246 (741)
T 1yr2_A 173 DGRLLAYSVQD-GGSDWRTVKFVGVADGKPLADEL----KWVKF-SGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVW 246 (741)
T ss_dssp TSSEEEEEEEE-TTCSEEEEEEEETTTCCEEEEEE----EEEES-CCCEESTTSEEEEEECCCC--------CCCCCEEE
T ss_pred CCCEEEEEEcC-CCCceEEEEEEECCCCCCCCccC----CCcee-ccEEEECCCEEEEEEecCcccccccccCCCCCEEE
Confidence 56666665432 22334579999999998755421 11111 1122222233333333222 11246789
Q ss_pred EEECCCCcE--EEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCC--c-EEEeecCCCCCCCCc
Q 007111 128 MFDLKSLTW--LPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETM--I-WTRIKIRGFHPSPRA 201 (617)
Q Consensus 128 ~yD~~t~~W--~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~--~-W~~~~~~g~~P~~R~ 201 (617)
++++.+..- ..+- .....+......... ++++|++.... .....++++++|+.+. . |..+... .....
T Consensus 247 ~~~lgt~~~~~~lv~--~~~~~~~~~~~~~~SpDG~~l~~~~~~-~~~~~~~l~~~d~~~~~~~~~~~l~~~---~~~~~ 320 (741)
T 1yr2_A 247 LHRLGTPQSADQPVF--ATPELPKRGHGASVSSDGRWVVITSSE-GTDPVNTVHVARVTNGKIGPVTALIPD---LKAQW 320 (741)
T ss_dssp EEETTSCGGGCEEEE--CCTTCTTCEEEEEECTTSCEEEEEEEC-TTCSCCEEEEEEEETTEECCCEEEECS---SSSCE
T ss_pred EEECCCCchhCEEEe--ccCCCCeEEEEEEECCCCCEEEEEEEc-cCCCcceEEEEECCCCCCcccEEecCC---CCceE
Confidence 999877652 2221 111112222233333 45545544432 2223578999999877 6 8877653 11222
Q ss_pred ceEEEEECCEEEEEecCCCCCccceEEEEECCC--CcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCC
Q 007111 202 GCCGVLCGTKWYIAGGGSRKKRHAETLIFDILK--GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSN 279 (617)
Q Consensus 202 ~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~--~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~ 279 (617)
......++.+|+..... .....++.+|+.+ ..|..+... . .. ....+.+. ++.+++....++ ..
T Consensus 321 -~~~~~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~l~~~--~-~~---~l~~~~~~---~~~lv~~~~~dg--~~ 386 (741)
T 1yr2_A 321 -DFVDGVGDQLWFVSGDG--APLKKIVRVDLSGSTPRFDTVVPE--S-KD---NLESVGIA---GNRLFASYIHDA--KS 386 (741)
T ss_dssp -EEEEEETTEEEEEECTT--CTTCEEEEEECSSSSCEEEEEECC--C-SS---EEEEEEEE---BTEEEEEEEETT--EE
T ss_pred -EEEeccCCEEEEEECCC--CCCCEEEEEeCCCCccccEEEecC--C-CC---eEEEEEEE---CCEEEEEEEECC--EE
Confidence 22234577888876432 2246799999987 579887521 1 11 12222222 356766655433 34
Q ss_pred eEEEEECCCC
Q 007111 280 QVEVLSIEKN 289 (617)
Q Consensus 280 dV~vyd~~~~ 289 (617)
.++++++...
T Consensus 387 ~l~~~~~~g~ 396 (741)
T 1yr2_A 387 QVLAFDLDGK 396 (741)
T ss_dssp EEEEEETTSC
T ss_pred EEEEEeCCCC
Confidence 7888887543
No 183
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=93.22 E-value=7 Score=38.50 Aligned_cols=188 Identities=13% Similarity=0.102 Sum_probs=93.9
Q ss_pred CEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCC
Q 007111 57 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSL 134 (617)
Q Consensus 57 ~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~ 134 (617)
+.+++.|+.+ ..+.+||..+........ +........++.+ ++.+++.|+.++ .+.+||..+.
T Consensus 54 g~~l~~~~~d------g~i~iw~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~dg------~v~iwd~~~~ 118 (368)
T 3mmy_A 54 GNFLIAGSWA------NDVRCWEVQDSGQTIPKA---QQMHTGPVLDVCWSDDGSKVFTASCDK------TAKMWDLSSN 118 (368)
T ss_dssp SEEEEEEETT------SEEEEEEECTTSCEEEEE---EEECSSCEEEEEECTTSSEEEEEETTS------EEEEEETTTT
T ss_pred ceEEEEECCC------CcEEEEEcCCCCceeEEE---eccccCCEEEEEECcCCCEEEEEcCCC------cEEEEEcCCC
Confidence 4788888763 257778877633222110 1111111222222 456666776543 5899999988
Q ss_pred cEEEeecCCCCCCCCcccEEEE--ECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEE
Q 007111 135 TWLPLHCTGTGPSPRSNHVAAL--YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKW 212 (617)
Q Consensus 135 ~W~~l~~~g~~P~~R~~h~a~~--~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~I 212 (617)
....... ... .-.+++. ..+..+++.|+.++ .+..||+.+..-...... +....+.....+.+
T Consensus 119 ~~~~~~~---~~~--~v~~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 183 (368)
T 3mmy_A 119 QAIQIAQ---HDA--PVKTIHWIKAPNYSCVMTGSWDK-----TLKFWDTRSSNPMMVLQL-----PERCYCADVIYPMA 183 (368)
T ss_dssp EEEEEEE---CSS--CEEEEEEEECSSCEEEEEEETTS-----EEEEECSSCSSCSEEEEC-----SSCEEEEEEETTEE
T ss_pred Cceeecc---ccC--ceEEEEEEeCCCCCEEEEccCCC-----cEEEEECCCCcEEEEEec-----CCCceEEEecCCee
Confidence 8665431 111 1112232 23333777777764 499999877653322221 11223344446655
Q ss_pred EEEecCCCCCccceEEEEECCCCc--EEEeecCCCCCCCCCcceEEEEEee-cCCcEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 213 YIAGGGSRKKRHAETLIFDILKGE--WSVAITSPSSSVTSNKGFTLVLVQH-KEKDFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 213 yI~GG~s~~~~~~~v~~yDl~~~~--W~~l~~~~~~~p~~r~~~s~v~v~~-~~~~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
++.++ . ..+.+||+.... +..+. .+............. ......++.|+.++ .|.+||+...
T Consensus 184 ~~~~~-~-----~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg----~i~i~~~~~~ 248 (368)
T 3mmy_A 184 VVATA-E-----RGLIVYQLENQPSEFRRIE-----SPLKHQHRCVAIFKDKQNKPTGFALGSIEG----RVAIHYINPP 248 (368)
T ss_dssp EEEEG-G-----GCEEEEECSSSCEEEEECC-----CSCSSCEEEEEEEECTTSCEEEEEEEETTS----EEEEEESSCS
T ss_pred EEEeC-C-----CcEEEEEeccccchhhhcc-----ccccCCCceEEEcccCCCCCCeEEEecCCC----cEEEEecCCC
Confidence 55443 2 347788887653 33322 111122222222221 11233467777653 6788888765
No 184
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=93.20 E-value=8.4 Score=39.34 Aligned_cols=150 Identities=15% Similarity=0.119 Sum_probs=74.6
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCC--cEEEeeccCCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETE--CWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLK 132 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~ 132 (617)
++.+++.||.+. .+.+||+... ....+. . ...... +++. -++.+++.|+.++ .+.+||+.
T Consensus 217 ~~~~l~sgs~D~------~v~~wd~~~~~~~~~~~~---~-h~~~v~-~v~~~p~~~~l~s~s~D~------~i~lwd~~ 279 (380)
T 3iz6_a 217 NANMFISGSCDT------TVRLWDLRITSRAVRTYH---G-HEGDIN-SVKFFPDGQRFGTGSDDG------TCRLFDMR 279 (380)
T ss_dssp SCCEEEEEETTS------CEEEEETTTTCCCCEEEC---C-CSSCCC-EEEECTTSSEEEEECSSS------CEEEEETT
T ss_pred CCCEEEEEECCC------eEEEEECCCCCcceEEEC---C-cCCCeE-EEEEecCCCeEEEEcCCC------eEEEEECC
Confidence 567888888642 4778887632 222221 0 111111 2222 2466777777654 38899998
Q ss_pred CCcEEEeecCCCC--CCCCc-ccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEee-cCCCCCCCCcceEEEE
Q 007111 133 SLTWLPLHCTGTG--PSPRS-NHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIK-IRGFHPSPRAGCCGVL 207 (617)
Q Consensus 133 t~~W~~l~~~g~~--P~~R~-~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~-~~g~~P~~R~~ha~v~ 207 (617)
+..-...-..... ..... -.+++.. ++. +++.|+.++ .+.+||..+....... ........+. .+++.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg-----~i~vwd~~~~~~~~~~~~~~~~h~~~v-~~l~~ 352 (380)
T 3iz6_a 280 TGHQLQVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYSNG-----DCYVWDTLLAEMVLNLGTLQNSHEGRI-SCLGL 352 (380)
T ss_dssp TTEEEEEECCCCSSSCCSSCSCSEEEECSSSS-EEEEECTTS-----CEEEEETTTCCEEEEECCSCSSCCCCC-CEEEE
T ss_pred CCcEEEEecccccccccccCceEEEEECCCCC-EEEEEECCC-----CEEEEECCCCceEEEEecccCCCCCce-EEEEE
Confidence 8764433111010 00000 1223333 455 667776654 4999998776654322 1100111122 22333
Q ss_pred E-CCEEEEEecCCCCCccceEEEEECCC
Q 007111 208 C-GTKWYIAGGGSRKKRHAETLIFDILK 234 (617)
Q Consensus 208 ~-~~~IyI~GG~s~~~~~~~v~~yDl~~ 234 (617)
. ++..++.||..+. +.++++..
T Consensus 353 s~dg~~l~sgs~D~~-----i~iW~~~~ 375 (380)
T 3iz6_a 353 SSDGSALCTGSWDKN-----LKIWAFSG 375 (380)
T ss_dssp CSSSSEEEEECTTSC-----EEEEECCS
T ss_pred CCCCCEEEEeeCCCC-----EEEEecCC
Confidence 2 6677777776543 66666543
No 185
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=93.18 E-value=3.1 Score=46.73 Aligned_cols=196 Identities=10% Similarity=0.011 Sum_probs=101.7
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEE-ECCEEEEEcccCCCC-------CCceEEEEEECCCCcE
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSG-------SDRVSVWTFDTETECW 85 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~-~g~~lyV~GG~~~~~-------~~~~~v~~yd~~t~~W 85 (617)
..++++|+.+++..... ..+.....+++. -+++.++++...... .....+|++++.+..-
T Consensus 147 ~~i~v~dl~tg~~~~~~------------~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~ 214 (695)
T 2bkl_A 147 AVLHVIDVDSGEWSKVD------------VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS 214 (695)
T ss_dssp CEEEEEETTTCCBCSSC------------CBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG
T ss_pred EEEEEEECCCCCCcCCc------------ccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCch
Confidence 46888888887653110 111111112222 255666665543221 1245699999987752
Q ss_pred --EEeeccCCCCCC-cceeEEE-EECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcE
Q 007111 86 --SVVEAKGDIPVA-RSGHTVV-RASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKN 161 (617)
Q Consensus 86 --~~~~~~g~~P~~-R~~~s~~-~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~ 161 (617)
..+. ..+.. ....... .-+++.++++..... ..+.+|.+|..+..|..+... .. .....+..++.
T Consensus 215 ~~~lv~---~~~~~~~~~~~~~~SpDG~~l~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~----~~-~~~~~~~~~g~- 283 (695)
T 2bkl_A 215 KDTVVH---ERTGDPTTFLQSDLSRDGKYLFVYILRGW--SENDVYWKRPGEKDFRLLVKG----VG-AKYEVHAWKDR- 283 (695)
T ss_dssp GCEEEE---CCCCCTTCEEEEEECTTSCCEEEEEEETT--TEEEEEEECTTCSSCEEEEEC----SS-CCEEEEEETTE-
T ss_pred hceEEE---ecCCCCEEEEEEEECCCCCEEEEEEeCCC--CceEEEEEcCCCCceEEeecC----CC-ceEEEEecCCc-
Confidence 2332 11221 2222222 224554444443331 246789998877788887521 11 11222335777
Q ss_pred EEEEccCCCCCCCCeEEEEECCCCc---EEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEE
Q 007111 162 LLIFGGSSKSKTLNDLYSLDFETMI---WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWS 238 (617)
Q Consensus 162 LyV~GG~~~~~~~n~v~~yD~~t~~---W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~ 238 (617)
+|+....+ .....|+++|+.+.. |..+.... + ...-..++..++.+++.+...+ ...+|.+++......
T Consensus 284 l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~~~~--~-~~~l~~~~~~~~~lv~~~~~dg---~~~l~~~~~~g~~~~ 355 (695)
T 2bkl_A 284 FYVLTDEG--APRQRVFEVDPAKPARASWKEIVPED--S-SASLLSVSIVGGHLSLEYLKDA---TSEVRVATLKGKPVR 355 (695)
T ss_dssp EEEEECTT--CTTCEEEEEBTTBCSGGGCEEEECCC--S-SCEEEEEEEETTEEEEEEEETT---EEEEEEEETTCCEEE
T ss_pred EEEEECCC--CCCCEEEEEeCCCCCccCCeEEecCC--C-CCeEEEEEEECCEEEEEEEECC---EEEEEEEeCCCCeeE
Confidence 77775543 224579999997755 88775421 1 1222233444888888765433 256889997655444
Q ss_pred Ee
Q 007111 239 VA 240 (617)
Q Consensus 239 ~l 240 (617)
.+
T Consensus 356 ~l 357 (695)
T 2bkl_A 356 TV 357 (695)
T ss_dssp EC
T ss_pred Ee
Confidence 43
No 186
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=93.12 E-value=8 Score=42.69 Aligned_cols=111 Identities=15% Similarity=0.195 Sum_probs=60.5
Q ss_pred ceEEEEEC-CCCc--EEEccccccCCCCCCCCCCCc--ccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EE
Q 007111 14 DDVQVLNF-DRFS--WTAASSKLYLSPSSLPLKIPA--CRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WS 86 (617)
Q Consensus 14 ~~v~~yd~-~t~~--W~~l~~~~~~~p~~~~~~~p~--r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~ 86 (617)
..++++|. .+.+ |+.-....... .+.+. ....+.+..+++||+.... ..++.+|..+.+ |+
T Consensus 73 ~~v~AlD~~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~v~~~d-------g~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 73 NNTYALNLNDPGKIVWQHKPKQDAST-----KAVMCCDVVDRGLAYGAGQIVKKQAN-------GHLLALDAKTGKINWE 140 (571)
T ss_dssp TCEEEEETTCTTSEEEEECCCCCGGG-----GGGCTTCSCCCCCEEETTEEEEECTT-------SEEEEEETTTCCEEEE
T ss_pred CEEEEEeCCCCccEEEEEcCCCCccc-----cccccccccccccEEECCEEEEEeCC-------CEEEEEECCCCCEEEE
Confidence 46999998 6654 97644310000 00000 0112345678899887432 369999998874 87
Q ss_pred EeeccCCCCCC-cceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEe
Q 007111 87 VVEAKGDIPVA-RSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPL 139 (617)
Q Consensus 87 ~~~~~g~~P~~-R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l 139 (617)
.-.. ..+.. ....+-++.++.+|+-.+....+ ....++.||+.+.+ |+.-
T Consensus 141 ~~~~--~~~~~~~~~~~P~v~~g~v~vg~~~~~~~-~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 141 VEVC--DPKVGSTLTQAPFVAKDTVLMGCSGAELG-VRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp EECC--CGGGTCBCCSCCEEETTEEEEECBCGGGT-CCCEEEEEETTTCCEEEEEE
T ss_pred ecCC--CCCccceeccCCEEECCEEEEEecCCccC-CCCEEEEEECCCCcEEEEEc
Confidence 5431 11100 11122334688887754322111 24579999999875 8754
No 187
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=93.07 E-value=7.9 Score=38.72 Aligned_cols=237 Identities=11% Similarity=0.032 Sum_probs=124.9
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCC--cEEEeec
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETE--CWSVVEA 90 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~ 90 (617)
+.+.++|+.+.+....... . ....-+.++.. ++++|+.... ...+++||+... .-..+..
T Consensus 69 ~~i~~~d~~~g~~~~~~~~---------~--~~~~p~gia~d~~g~l~v~d~~------~~~v~~~~~~g~~~~~~~~~~ 131 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGK---------N--LFYLPHGLSIDTDGNYWVTDVA------LHQVFKLDPHSKEGPLLILGR 131 (329)
T ss_dssp CCEEEECTTTCCEEEEECT---------T--TCSSEEEEEECTTSCEEEEETT------TTEEEEECTTCSSCCSEEESB
T ss_pred CcEEEEECCCCeEEeccCC---------C--ccCCceEEEECCCCCEEEEECC------CCEEEEEeCCCCeEEEEEecc
Confidence 3689999987765432210 0 00112334433 5678887643 236999998765 2223321
Q ss_pred cC---CCC-CCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCC----CCCCc-ccEEEEECC
Q 007111 91 KG---DIP-VARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTG----PSPRS-NHVAALYDD 159 (617)
Q Consensus 91 ~g---~~P-~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~----P~~R~-~h~a~~~~~ 159 (617)
.+ .-+ .......+++. ++.||+..+.. .+.+.+||+....-..+...+.. +.... -+.+++-.+
T Consensus 132 ~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~-----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~ 206 (329)
T 3fvz_A 132 SMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC-----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH 206 (329)
T ss_dssp TTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS-----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETT
T ss_pred cCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC-----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC
Confidence 11 001 11123345554 57999987521 24689999665544433211211 11111 223444433
Q ss_pred -cEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCC--CCccceEEEEECCCCc
Q 007111 160 -KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR--KKRHAETLIFDILKGE 236 (617)
Q Consensus 160 -~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~--~~~~~~v~~yDl~~~~ 236 (617)
..|||....+ +.|.+||+.++++......+ .....-.+++...+.+|...|... ......++++|+.+..
T Consensus 207 ~g~l~v~d~~~-----~~I~~~~~~~G~~~~~~~~~--~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~ 279 (329)
T 3fvz_A 207 LDQLCVADREN-----GRIQCFKTDTKEFVREIKHA--SFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGE 279 (329)
T ss_dssp TTEEEEEETTT-----TEEEEEETTTCCEEEEECCT--TTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCC
T ss_pred CCEEEEEECCC-----CEEEEEECCCCcEEEEEecc--ccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCe
Confidence 4588886543 46999999877776544321 122222344444678888777432 2223568999988877
Q ss_pred EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 237 WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 237 W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
....-.. . .........+.+.. ++.|||....+ +.|++|++..
T Consensus 280 ~~~~~~~--~-~~~~~~p~~ia~~~--dG~lyvad~~~----~~I~~~~~~~ 322 (329)
T 3fvz_A 280 IIDVFKP--V-RKHFDMPHDIVASE--DGTVYIGDAHT----NTVWKFTLTE 322 (329)
T ss_dssp EEEEECC--S-SSCCSSEEEEEECT--TSEEEEEESSS----CCEEEEEEEE
T ss_pred EEEEEcC--C-CCccCCeeEEEECC--CCCEEEEECCC----CEEEEEeCCc
Confidence 5554211 1 11122233444442 35788877543 4788888764
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=93.01 E-value=5.8 Score=39.15 Aligned_cols=185 Identities=11% Similarity=0.073 Sum_probs=92.7
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCc--EEEeeccCCCCC-CcceeEEEEECCEEEEEeecCCCCCccCeEEEEECC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIPV-ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLK 132 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~P~-~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~ 132 (617)
.+++++.|..+ ..+..+|.++.+ |+.-. +. .......+.-++.||+.+ .+.++.||+
T Consensus 4 ~~~~lv~~~~~------~~v~~~d~~tG~~~w~~~~-----~~~~~~~~~~~~pdG~ilvs~--------~~~V~~~d~- 63 (276)
T 3no2_A 4 PQHLLVGGSGW------NKIAIINKDTKEIVWEYPL-----EKGWECNSVAATKAGEILFSY--------SKGAKMITR- 63 (276)
T ss_dssp CCEEEEECTTC------SEEEEEETTTTEEEEEEEC-----CTTCCCCEEEECTTSCEEEEC--------BSEEEEECT-
T ss_pred CCcEEEeeCCC------CEEEEEECCCCeEEEEeCC-----CccCCCcCeEECCCCCEEEeC--------CCCEEEECC-
Confidence 35677776542 368889987775 76543 11 122233333467777732 245999999
Q ss_pred CCc--EEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCc-EEEeecCCC-CCCCCcceEEEE
Q 007111 133 SLT--WLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMI-WTRIKIRGF-HPSPRAGCCGVL 207 (617)
Q Consensus 133 t~~--W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~-W~~~~~~g~-~P~~R~~ha~v~ 207 (617)
+.+ |+.-. +....-+++... +++ +++..... ...++.+|+.... |+.....+. .+..........
T Consensus 64 ~G~~~W~~~~-----~~~~~~~~~~~~~dG~-~lv~~~~~----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~ 133 (276)
T 3no2_A 64 DGRELWNIAA-----PAGCEMQTARILPDGN-ALVAWCGH----PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKN 133 (276)
T ss_dssp TSCEEEEEEC-----CTTCEEEEEEECTTSC-EEEEEEST----TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEEC
T ss_pred CCCEEEEEcC-----CCCccccccEECCCCC-EEEEecCC----CCEEEEEeCCCCEEEEEeccCCCCcccccccCceEC
Confidence 443 77431 211222344444 455 55443321 1358888885442 443221110 010111112223
Q ss_pred ECCEEEEEecCCCCCccceEEEEECCCC-cEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEEC
Q 007111 208 CGTKWYIAGGGSRKKRHAETLIFDILKG-EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 286 (617)
Q Consensus 208 ~~~~IyI~GG~s~~~~~~~v~~yDl~~~-~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~ 286 (617)
.++.+++..... ..+..||+... .|+.-. + . ..+++.... .+.++|++..+ +.|..+|+
T Consensus 134 ~~G~~lv~~~~~-----~~v~~~d~~G~~~w~~~~--~-~-----~~~~~~~~~---~g~~~v~~~~~----~~v~~~d~ 193 (276)
T 3no2_A 134 KKGNYLVPLFAT-----SEVREIAPNGQLLNSVKL--S-G-----TPFSSAFLD---NGDCLVACGDA----HCFVQLNL 193 (276)
T ss_dssp TTSCEEEEETTT-----TEEEEECTTSCEEEEEEC--S-S-----CCCEEEECT---TSCEEEECBTT----SEEEEECT
T ss_pred CCCCEEEEecCC-----CEEEEECCCCCEEEEEEC--C-C-----CccceeEcC---CCCEEEEeCCC----CeEEEEeC
Confidence 366666654322 45889998743 366532 1 1 123333332 35566666543 36888888
Q ss_pred CCCc
Q 007111 287 EKNE 290 (617)
Q Consensus 287 ~~~~ 290 (617)
.+.+
T Consensus 194 ~tG~ 197 (276)
T 3no2_A 194 ESNR 197 (276)
T ss_dssp TTCC
T ss_pred cCCc
Confidence 8554
No 189
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=92.99 E-value=13 Score=41.70 Aligned_cols=234 Identities=10% Similarity=0.027 Sum_probs=115.9
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcc--cceEEEEECCEEEEEcccCCC-------CCCceEEEEEECCCCc
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPAC--RGHSLISWGKKVLLVGGKTDS-------GSDRVSVWTFDTETEC 84 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r--~~hs~v~~g~~lyV~GG~~~~-------~~~~~~v~~yd~~t~~ 84 (617)
..++++|+.++++..... +.. .+.+.. .+..||... .... ......+|++++.+..
T Consensus 155 ~~i~v~dl~tg~~~~~~~-------------~~~k~~~~~Ws-Dg~~l~y~~-~~~~~~~~~~~~~~~~~v~~~~lgt~~ 219 (693)
T 3iuj_A 155 REIHLMDVESKQPLETPL-------------KDVKFSGISWL-GNEGFFYSS-YDKPDGSELSARTDQHKVYFHRLGTAQ 219 (693)
T ss_dssp EEEEEEETTTCSEEEEEE-------------EEEESCCCEEE-TTTEEEEEE-SSCCC-------CCCCEEEEEETTSCG
T ss_pred EEEEEEECCCCCCCcccc-------------CCceeccEEEe-CCCEEEEEE-ecCcccccccccCCCcEEEEEECCCCc
Confidence 468888998888654421 111 122223 234455443 2211 1234579999887764
Q ss_pred E--EEeeccCCCCC--CcceeEE-EEECCE-EEEEeecCCCCCccCeEEEEECCCC--cEEEeecCCCCCCCCcccEEEE
Q 007111 85 W--SVVEAKGDIPV--ARSGHTV-VRASSV-LILFGGEDGKRRKLNDLHMFDLKSL--TWLPLHCTGTGPSPRSNHVAAL 156 (617)
Q Consensus 85 W--~~~~~~g~~P~--~R~~~s~-~~~~~~-IYv~GG~~~~~~~~~~v~~yD~~t~--~W~~l~~~g~~P~~R~~h~a~~ 156 (617)
= ..+- ..+. ....... ..-+++ |++....... .+.+|++|..+. .|..+.. +... ....+.
T Consensus 220 ~~~~~v~---~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~---~~~i~~~d~~~~~~~~~~l~~----~~~~-~~~~~~ 288 (693)
T 3iuj_A 220 EDDRLVF---GAIPAQHHRYVGATVTEDDRFLLISAANSTS---GNRLYVKDLSQENAPLLTVQG----DLDA-DVSLVD 288 (693)
T ss_dssp GGCEEEE---SCSGGGCCSEEEEEECTTSCEEEEEEESSSS---CCEEEEEETTSTTCCCEEEEC----SSSS-CEEEEE
T ss_pred ccceEEE---ecCCCCCeEEEEEEEcCCCCEEEEEEccCCC---CcEEEEEECCCCCCceEEEeC----CCCc-eEEEEe
Confidence 2 2222 1122 2212222 222444 4444333222 368999998776 6887741 1111 112233
Q ss_pred ECCcEEEEEccCCCCCCCCeEEEEECCCC---cEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECC
Q 007111 157 YDDKNLLIFGGSSKSKTLNDLYSLDFETM---IWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 233 (617)
Q Consensus 157 ~~~~~LyV~GG~~~~~~~n~v~~yD~~t~---~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~ 233 (617)
.++..+|+....+. ....|+.+|+.+. .|+.+.+.. . ... .....++.+++..-..+ ...++++|+.
T Consensus 289 ~~g~~l~~~t~~~~--~~~~l~~~d~~~~~~~~~~~l~~~~--~--~~~-~~s~~g~~lv~~~~~~g---~~~l~~~d~~ 358 (693)
T 3iuj_A 289 NKGSTLYLLTNRDA--PNRRLVTVDAANPGPAHWRDLIPER--Q--QVL-TVHSGSGYLFAEYMVDA---TARVEQFDYE 358 (693)
T ss_dssp EETTEEEEEECTTC--TTCEEEEEETTSCCGGGCEEEECCC--S--SCE-EEEEETTEEEEEEEETT---EEEEEEECTT
T ss_pred ccCCEEEEEECCCC--CCCEEEEEeCCCCCccccEEEecCC--C--CEE-EEEEECCEEEEEEEECC---eeEEEEEECC
Confidence 34444888766532 2457999999763 488765531 1 112 44555777766543222 2468899988
Q ss_pred CCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 234 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 234 ~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
......+.. + ... ....+....+++..+|.+.+.. ....++.||+.+.++
T Consensus 359 g~~~~~l~~-p----~~~-~~~~~~~~~d~~~l~~~~ss~~--tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 359 GKRVREVAL-P----GLG-SVSGFNGKHDDPALYFGFENYA--QPPTLYRFEPKSGAI 408 (693)
T ss_dssp SCEEEEECC-S----SSS-EEEECCCCTTCSCEEEEEECSS--SCCEEEEECTTTCCE
T ss_pred CCeeEEeec-C----CCc-eEEeeecCCCCCEEEEEecCCC--CCCEEEEEECCCCeE
Confidence 665555431 1 111 1111111112223333333332 245788888766553
No 190
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=92.93 E-value=10 Score=42.18 Aligned_cols=189 Identities=9% Similarity=0.098 Sum_probs=94.2
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 134 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~ 134 (617)
++++++.||.+ ..+.+||+.+..-...-. + ..... .+++. .++..++.|+.+. .+.+||....
T Consensus 441 ~g~~l~sgs~D------g~v~vwd~~~~~~~~~~~-~--h~~~v-~~~~~s~~~~~l~s~s~D~------~i~iwd~~~~ 504 (694)
T 3dm0_A 441 DGQFALSGSWD------GELRLWDLAAGVSTRRFV-G--HTKDV-LSVAFSLDNRQIVSASRDR------TIKLWNTLGE 504 (694)
T ss_dssp TSSEEEEEETT------SEEEEEETTTTEEEEEEE-C--CSSCE-EEEEECTTSSCEEEEETTS------CEEEECTTSC
T ss_pred CCCEEEEEeCC------CcEEEEECCCCcceeEEe-C--CCCCE-EEEEEeCCCCEEEEEeCCC------EEEEEECCCC
Confidence 56777777763 268888988775332210 0 11111 12222 2456677777654 3777887654
Q ss_pred cEEEeecCCCCCCCCcccEEEEE-CC--cEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CC
Q 007111 135 TWLPLHCTGTGPSPRSNHVAALY-DD--KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT 210 (617)
Q Consensus 135 ~W~~l~~~g~~P~~R~~h~a~~~-~~--~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~ 210 (617)
.-..+.. .....+..-.++.+ .+ ..+++.|+.++ .|.+||+.+......-.. ....-.+++.. ++
T Consensus 505 ~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~-----~v~vwd~~~~~~~~~~~~----h~~~v~~v~~spdg 573 (694)
T 3dm0_A 505 CKYTISE--GGEGHRDWVSCVRFSPNTLQPTIVSASWDK-----TVKVWNLSNCKLRSTLAG----HTGYVSTVAVSPDG 573 (694)
T ss_dssp EEEEECS--STTSCSSCEEEEEECSCSSSCEEEEEETTS-----CEEEEETTTCCEEEEECC----CSSCEEEEEECTTS
T ss_pred cceeecc--CCCCCCCcEEEEEEeCCCCcceEEEEeCCC-----eEEEEECCCCcEEEEEcC----CCCCEEEEEEeCCC
Confidence 3222211 11111111223333 22 12677777764 389999987765433221 11112233333 56
Q ss_pred EEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 211 KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 211 ~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.+++.||..+ .+.++|+.+..-.... . ......++.+.. ++.+++.|.. +.|.+||+.+..
T Consensus 574 ~~l~sg~~Dg-----~i~iwd~~~~~~~~~~--~-----~~~~v~~~~~sp--~~~~l~~~~~-----~~i~iwd~~~~~ 634 (694)
T 3dm0_A 574 SLCASGGKDG-----VVLLWDLAEGKKLYSL--E-----ANSVIHALCFSP--NRYWLCAATE-----HGIKIWDLESKS 634 (694)
T ss_dssp SEEEEEETTS-----BCEEEETTTTEEEECC--B-----CSSCEEEEEECS--SSSEEEEEET-----TEEEEEETTTTE
T ss_pred CEEEEEeCCC-----eEEEEECCCCceEEEe--c-----CCCcEEEEEEcC--CCcEEEEEcC-----CCEEEEECCCCC
Confidence 7777777553 4778898876533211 1 112233344432 2334444432 258899988765
No 191
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=92.85 E-value=2.2 Score=42.21 Aligned_cols=194 Identities=10% Similarity=0.086 Sum_probs=96.3
Q ss_pred CEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEEC----CEEEEEeecCCCCCccCeEEEEECC
Q 007111 57 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS----SVLILFGGEDGKRRKLNDLHMFDLK 132 (617)
Q Consensus 57 ~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~----~~IYv~GG~~~~~~~~~~v~~yD~~ 132 (617)
.++++.|+... .-..+.+||..+......... .....-.+++... +.+++.|+.++ .+.+||..
T Consensus 31 ~~l~~~~s~~~---~d~~v~iw~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~l~~~~~dg------~i~iwd~~ 98 (357)
T 3i2n_A 31 AKFVTMGNFAR---GTGVIQLYEIQHGDLKLLREI---EKAKPIKCGTFGATSLQQRYLATGDFGG------NLHIWNLE 98 (357)
T ss_dssp SEEEEEEC--C---CCEEEEEEEECSSSEEEEEEE---EESSCEEEEECTTCCTTTCCEEEEETTS------CEEEECTT
T ss_pred ceEEEecCccC---CCcEEEEEeCCCCcccceeee---cccCcEEEEEEcCCCCCCceEEEecCCC------eEEEEeCC
Confidence 36666765411 123688889888876544311 1111112222222 47777777654 37888887
Q ss_pred CCc--EEEeecCCCCCCCCcccEEEE-------ECCcEEEEEccCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCCc
Q 007111 133 SLT--WLPLHCTGTGPSPRSNHVAAL-------YDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRA 201 (617)
Q Consensus 133 t~~--W~~l~~~g~~P~~R~~h~a~~-------~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~~~~g~~P~~R~ 201 (617)
+.. ...+. + ...+ -.++.. -++. +++.|+.++ .+..||+.+.. ...+.... ....+.
T Consensus 99 ~~~~~~~~~~--~-~~~~--v~~~~~~~~~~~s~~~~-~l~~~~~d~-----~i~vwd~~~~~~~~~~~~~~~-~~~~~~ 166 (357)
T 3i2n_A 99 APEMPVYSVK--G-HKEI--INAIDGIGGLGIGEGAP-EIVTGSRDG-----TVKVWDPRQKDDPVANMEPVQ-GENKRD 166 (357)
T ss_dssp SCSSCSEEEC--C-CSSC--EEEEEEESGGGCC-CCC-EEEEEETTS-----CEEEECTTSCSSCSEEECCCT-TSCCCC
T ss_pred CCCccEEEEE--e-cccc--eEEEeeccccccCCCcc-EEEEEeCCC-----eEEEEeCCCCCCcceeccccC-CCCCCc
Confidence 664 22221 1 1111 111111 2345 677777664 48999997764 33332210 011222
Q ss_pred ceEEEE-----ECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecC-CcEEEEEcCCCC
Q 007111 202 GCCGVL-----CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKE-KDFLVAFGGIKK 275 (617)
Q Consensus 202 ~ha~v~-----~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~-~~~L~I~GG~~~ 275 (617)
..+++. .++.+++.|+.. ..+.+||+.+..-...... ......+.+...+ .+..+++|+.++
T Consensus 167 v~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~l~~~~~dg 234 (357)
T 3i2n_A 167 CWTVAFGNAYNQEERVVCAGYDN-----GDIKLFDLRNMALRWETNI-------KNGVCSLEFDRKDISMNKLVATSLEG 234 (357)
T ss_dssp EEEEEEECCCC-CCCEEEEEETT-----SEEEEEETTTTEEEEEEEC-------SSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred eEEEEEEeccCCCCCEEEEEccC-----CeEEEEECccCceeeecCC-------CCceEEEEcCCCCCCCCEEEEECCCC
Confidence 223331 366677777654 3588999988764333211 1223344443210 244566776543
Q ss_pred CCCCeEEEEECCCCc
Q 007111 276 EPSNQVEVLSIEKNE 290 (617)
Q Consensus 276 ~~~~dV~vyd~~~~~ 290 (617)
.|.+||+.+.+
T Consensus 235 ----~i~i~d~~~~~ 245 (357)
T 3i2n_A 235 ----KFHVFDMRTQH 245 (357)
T ss_dssp ----EEEEEEEEEEE
T ss_pred ----eEEEEeCcCCC
Confidence 67888876543
No 192
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=92.84 E-value=6.6 Score=43.44 Aligned_cols=205 Identities=16% Similarity=0.129 Sum_probs=110.0
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEE-eeccCC-------CCCCcceeEEEEECCEEEEEeecCCCCCccCeEE
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSV-VEAKGD-------IPVARSGHTVVRASSVLILFGGEDGKRRKLNDLH 127 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~g~-------~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~ 127 (617)
|.++|+..-. ...+.+||..+.+-.. +++.+. .|.+|.....+..++..+++-- .....++
T Consensus 255 Gk~l~v~n~~------~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~-----~~~g~v~ 323 (567)
T 1qks_A 255 DKYAIAGAYW------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV-----KETGKIL 323 (567)
T ss_dssp TTEEEEEEEE------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE-----TTTTEEE
T ss_pred CCEEEEEEcc------CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe-----cCCCeEE
Confidence 4467776543 2468888987765333 332110 1233433333222333333321 1246789
Q ss_pred EEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecC-CCCCCCCcceEE
Q 007111 128 MFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR-GFHPSPRAGCCG 205 (617)
Q Consensus 128 ~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~-g~~P~~R~~ha~ 205 (617)
+.|..+..+..+. .++.+++-|...+- +++++|+.... .+.|.++|..+++-...... +..|.|..+...
T Consensus 324 ~vd~~~~~~~~v~---~i~~~~~~~d~~~~pdgr~~~va~~~-----sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~ 395 (567)
T 1qks_A 324 LVDYTDLNNLKTT---EISAERFLHDGGLDGSHRYFITAANA-----RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF 395 (567)
T ss_dssp EEETTCSSEEEEE---EEECCSSEEEEEECTTSCEEEEEEGG-----GTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE
T ss_pred EEecCCCccceee---eeeccccccCceECCCCCEEEEEeCC-----CCeEEEEECCCCcEEEEEeccCcCCCCccceee
Confidence 9998887765553 34455666655544 45556665433 35699999999876555455 555655434332
Q ss_pred EEE--CCEEEEEecCCCCCccceEEEEECCCC-----cEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCC--
Q 007111 206 VLC--GTKWYIAGGGSRKKRHAETLIFDILKG-----EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE-- 276 (617)
Q Consensus 206 v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~-----~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~-- 276 (617)
.. ++.+|+.+-... ..+-++|..+. .|+.+...+... ..+..+-.+.+..++|+---.+.+
T Consensus 396 -~~p~~g~v~~t~~~g~----~~Vsvid~~~~~~~~~~~kvv~~i~~~g-----~g~~~i~~~p~~~~l~v~~~~~~~~~ 465 (567)
T 1qks_A 396 -VHPTFGPVWATSHMGD----DSVALIGTDPEGHPDNAWKILDSFPALG-----GGSLFIKTHPNSQYLYVDATLNPEAE 465 (567)
T ss_dssp -EETTTEEEEEEEBSSS----SEEEEEECCTTTCTTTBTSEEEEEECSC-----SCCCCEECCTTCSEEEEECTTCSSHH
T ss_pred -ECCCCCcEEEeCCCCC----CeEEEecCCCCCCccccCEEEEEEecCC-----CCCEEEEeCCCCCeEEEecCCCCCcc
Confidence 23 356777653221 34778887763 277665433221 112223344555678874422211
Q ss_pred CCCeEEEEECCCC
Q 007111 277 PSNQVEVLSIEKN 289 (617)
Q Consensus 277 ~~~dV~vyd~~~~ 289 (617)
..+.|.+||+.+.
T Consensus 466 ~~~~v~v~d~~~~ 478 (567)
T 1qks_A 466 ISGSVAVFDIKAM 478 (567)
T ss_dssp HHTCEEEEEGGGC
T ss_pred cCceEEEEECCcc
Confidence 1458999998765
No 193
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=92.78 E-value=1.1 Score=46.87 Aligned_cols=101 Identities=12% Similarity=0.124 Sum_probs=52.1
Q ss_pred CCEEEEEeecCCCCCccCeEEEEECCCCc----EEEeecCCCCCCCCcccEEEEE--CCcEEEEEccCCCCCCCCeEEEE
Q 007111 107 SSVLILFGGEDGKRRKLNDLHMFDLKSLT----WLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSL 180 (617)
Q Consensus 107 ~~~IYv~GG~~~~~~~~~~v~~yD~~t~~----W~~l~~~g~~P~~R~~h~a~~~--~~~~LyV~GG~~~~~~~n~v~~y 180 (617)
++.+++.|+.+ ..+.+||+.+.. -..+. .......++.+ ++..+++.|+.++ .|.+|
T Consensus 243 ~~~~l~s~~~d------g~i~i~d~~~~~~~~~~~~~~------~~~~~v~~i~~~p~~~~~l~tg~~dg-----~v~vw 305 (430)
T 2xyi_A 243 HESLFGSVADD------QKLMIWDTRNNNTSKPSHTVD------AHTAEVNCLSFNPYSEFILATGSADK-----TVALW 305 (430)
T ss_dssp CTTEEEEEETT------SEEEEEETTCSCSSSCSEEEE------CCSSCEEEEEECSSCTTEEEEEETTS-----EEEEE
T ss_pred CCCEEEEEeCC------CeEEEEECCCCCCCcceeEee------cCCCCeEEEEeCCCCCCEEEEEeCCC-----eEEEE
Confidence 45677777654 358899998652 11111 00111122333 2434788888764 48999
Q ss_pred ECCCCc--EEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCC
Q 007111 181 DFETMI--WTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILK 234 (617)
Q Consensus 181 D~~t~~--W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~ 234 (617)
|+.+.. -..+.. ....-.++... +..+++.||..+ .+.+||+..
T Consensus 306 d~~~~~~~~~~~~~-----h~~~v~~i~~sp~~~~~l~s~~~d~-----~i~iwd~~~ 353 (430)
T 2xyi_A 306 DLRNLKLKLHSFES-----HKDEIFQVQWSPHNETILASSGTDR-----RLHVWDLSK 353 (430)
T ss_dssp ETTCTTSCSEEEEC-----CSSCEEEEEECSSCTTEEEEEETTS-----CCEEEEGGG
T ss_pred eCCCCCCCeEEeec-----CCCCEEEEEECCCCCCEEEEEeCCC-----cEEEEeCCC
Confidence 987632 111111 11111223332 335777777553 367788765
No 194
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=92.75 E-value=0.44 Score=46.27 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhh
Q 007111 559 VAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSL 604 (617)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (617)
+.-+..-+.+.+.++...+.-+..-+.+.=.+++++.++..+|.+|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 284 (284)
T 1c1g_A 239 AEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3333444444444444444444333444444556666666666554
No 195
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=92.71 E-value=15 Score=41.55 Aligned_cols=115 Identities=12% Similarity=0.058 Sum_probs=61.7
Q ss_pred ceEEEEECCCCc--EEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEee
Q 007111 14 DDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVE 89 (617)
Q Consensus 14 ~~v~~yd~~t~~--W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~ 89 (617)
..++++|..+++ |..-......... .........+.+..+++||+.+.. ..++.+|..|.+ |+...
T Consensus 80 ~~v~AlD~~tG~~~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~v~v~~~d-------g~l~AlDa~TG~~~W~~~~ 149 (689)
T 1yiq_A 80 SVVYALDARDGRLIWKYDPQSDRHRAG---EACCDAVNRGVAVWKGKVYVGVLD-------GRLEAIDAKTGQRAWSVDT 149 (689)
T ss_dssp GCEEEEETTTCCEEEEECCCCCGGGGG---GCTTCSCCCCCEEETTEEEEECTT-------SEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCCceeEEEcCCCCccccc---cccccCCCCccEEECCEEEEEccC-------CEEEEEECCCCCEeeeecC
Confidence 469999987665 9764321000000 000000112345578888876421 369999998875 87654
Q ss_pred ccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEe
Q 007111 90 AKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPL 139 (617)
Q Consensus 90 ~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l 139 (617)
............+-++.++.+|+-.+.... .....++.||+.+.+ |+.-
T Consensus 150 ~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 150 RADHKRSYTITGAPRVVNGKVVIGNGGAEF-GVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp CSCTTSCCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEEE
T ss_pred cCCCCCCccccCCcEEECCEEEEEeCCCcc-CCCCEEEEEECCCCcEEEEec
Confidence 200101111222334568888774332211 134679999999876 8864
No 196
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=92.66 E-value=8.9 Score=40.06 Aligned_cols=160 Identities=9% Similarity=0.007 Sum_probs=81.1
Q ss_pred CEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcE
Q 007111 57 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTW 136 (617)
Q Consensus 57 ~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W 136 (617)
+++++.|+.+ ..+.+||+.+......-..+ ........+.. ++.+++.||.+ ..+.+||..+.+.
T Consensus 210 ~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~--h~~~v~~~~~s-d~~~l~s~~~d------~~v~vwd~~~~~~ 274 (450)
T 2vdu_B 210 HQFIITSDRD------EHIKISHYPQCFIVDKWLFG--HKHFVSSICCG-KDYLLLSAGGD------DKIFAWDWKTGKN 274 (450)
T ss_dssp CEEEEEEETT------SCEEEEEESCTTCEEEECCC--CSSCEEEEEEC-STTEEEEEESS------SEEEEEETTTCCE
T ss_pred CcEEEEEcCC------CcEEEEECCCCceeeeeecC--CCCceEEEEEC-CCCEEEEEeCC------CeEEEEECCCCcE
Confidence 7788888763 25788887766533221111 11111222222 67777777743 3589999988764
Q ss_pred EEeecCCC----C-----------------CCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEEC--CC-CcEEEee
Q 007111 137 LPLHCTGT----G-----------------PSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDF--ET-MIWTRIK 191 (617)
Q Consensus 137 ~~l~~~g~----~-----------------P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~--~t-~~W~~~~ 191 (617)
...-..+. + +....-..++.. ++.++++.++.+ +.|.+||+ .+ ..+..+.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d-----~~i~iw~~~~~~~~~l~~~~ 349 (450)
T 2vdu_B 275 LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT-----KCIIILEMSEKQKGDLALKQ 349 (450)
T ss_dssp EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTC-----SEEEEEEECSSSTTCEEEEE
T ss_pred eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCC-----CeEEEEEeccCCCCceeecc
Confidence 43211000 0 011111122222 355344443233 35888888 33 4455544
Q ss_pred cCCCCCCCCcceEEEEECCEEEEEecCCCC----CccceEEEEECCCCcEEE
Q 007111 192 IRGFHPSPRAGCCGVLCGTKWYIAGGGSRK----KRHAETLIFDILKGEWSV 239 (617)
Q Consensus 192 ~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~----~~~~~v~~yDl~~~~W~~ 239 (617)
.. +....-.+++...+.+++..+.... ...-.+|.++..++.|..
T Consensus 350 ~~---~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~~ 398 (450)
T 2vdu_B 350 II---TFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFVV 398 (450)
T ss_dssp EE---ECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEEEE
T ss_pred Ee---ccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeEEE
Confidence 32 1122223445556777777654321 223467888888888863
No 197
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=92.40 E-value=9.7 Score=38.03 Aligned_cols=190 Identities=9% Similarity=0.005 Sum_probs=95.9
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEE-EeeccCCCCCCcce--eEEEEECCEEEEEeecCCCCCccCeEEEEECC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWS-VVEAKGDIPVARSG--HTVVRASSVLILFGGEDGKRRKLNDLHMFDLK 132 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~g~~P~~R~~--~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~ 132 (617)
++.+++.||.+. .+.+||..+..-. .+. .+..-..... ...+..++.+.++. ....+..||..
T Consensus 47 d~~~l~sg~~Dg------~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~~~s~s~D~~i~~w~-------~~~~~~~~~~~ 112 (343)
T 3lrv_A 47 DKWVCMCRCEDG------ALHFTQLKDSKTITTIT-TPNPRTGGEHPAIISRGPCNRLLLLY-------PGNQITILDSK 112 (343)
T ss_dssp EEEEEEEEEETT------EEEEEEESSSSCEEEEE-EECCCTTCCCCSEEEECSTTEEEEEE-------TTTEEEEEETT
T ss_pred CCCEEEEECCCC------cEEEEECCCCcEEEEEe-cCCceeeeeCCceEEecCCCeEEEEE-------ccCceEEeecC
Confidence 566777777642 5777787765421 111 1111110000 12222244555542 22456778887
Q ss_pred CCc-EEEeecCCCCCCCCcccEEEEE---CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE
Q 007111 133 SLT-WLPLHCTGTGPSPRSNHVAALY---DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC 208 (617)
Q Consensus 133 t~~-W~~l~~~g~~P~~R~~h~a~~~---~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~ 208 (617)
+.. ..... .+....-.+++.. ++. +++.|+.++. +..||+.++........ .......+++..
T Consensus 113 ~~~~~~~~~----~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~-----i~~wd~~~~~~~~~~~~---~~~~~i~~~~~~ 179 (343)
T 3lrv_A 113 TNKVLREIE----VDSANEIIYMYGHNEVNTE-YFIWADNRGT-----IGFQSYEDDSQYIVHSA---KSDVEYSSGVLH 179 (343)
T ss_dssp TCCEEEEEE----CCCSSCEEEEECCC---CC-EEEEEETTCC-----EEEEESSSSCEEEEECC---CSSCCCCEEEEC
T ss_pred CcceeEEee----cCCCCCEEEEEcCCCCCCC-EEEEEeCCCc-----EEEEECCCCcEEEEEec---CCCCceEEEEEC
Confidence 776 33332 1111111122222 344 7777887654 99999988877544322 111112333433
Q ss_pred -CCEEEEEecCCCCCccceEEEEECCCCcEE--EeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEE
Q 007111 209 -GTKWYIAGGGSRKKRHAETLIFDILKGEWS--VAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLS 285 (617)
Q Consensus 209 -~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~--~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd 285 (617)
++.+++.|+..+ .+.+||+.+..-. .+. . ........+.+.. ++.+++.|+. + .|.+||
T Consensus 180 pdg~~lasg~~dg-----~i~iwd~~~~~~~~~~~~---~---~h~~~v~~l~fs~--~g~~l~s~~~-~----~v~iwd 241 (343)
T 3lrv_A 180 KDSLLLALYSPDG-----ILDVYNLSSPDQASSRFP---V---DEEAKIKEVKFAD--NGYWMVVECD-Q----TVVCFD 241 (343)
T ss_dssp TTSCEEEEECTTS-----CEEEEESSCTTSCCEECC---C---CTTSCEEEEEECT--TSSEEEEEES-S----BEEEEE
T ss_pred CCCCEEEEEcCCC-----EEEEEECCCCCCCccEEe---c---cCCCCEEEEEEeC--CCCEEEEEeC-C----eEEEEE
Confidence 667777777553 4889999876532 221 1 0112333444432 3445666663 2 789999
Q ss_pred CCCCc
Q 007111 286 IEKNE 290 (617)
Q Consensus 286 ~~~~~ 290 (617)
+.+.+
T Consensus 242 ~~~~~ 246 (343)
T 3lrv_A 242 LRKDV 246 (343)
T ss_dssp TTSST
T ss_pred cCCCC
Confidence 98765
No 198
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=92.35 E-value=8.4 Score=37.22 Aligned_cols=224 Identities=15% Similarity=0.092 Sum_probs=104.8
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
+.|.++|+.+++....-. ...+...-.+++.. +++.++.|+.+ ..+.++|..+.+-.....
T Consensus 45 ~tV~iWd~~tg~~~~~~~----------~~~~~~~V~~v~~~~~~~~l~sgs~D------g~v~iw~~~~~~~~~~~~-- 106 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQ----------MEQPGEYISSVAWIKEGNYLAVGTSS------AEVQLWDVQQQKRLRNMT-- 106 (318)
T ss_dssp TEEEEEETTTCCEEEEEE----------CCSTTCCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEE--
T ss_pred CEEEEEECCCCCEEEEEE----------ecCCCCeEEEEEECCCCCEEEEEECC------CcEEEeecCCceeEEEec--
Confidence 368999999887655432 11111111223222 56777778763 268888998886433321
Q ss_pred CCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCC
Q 007111 93 DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKS 171 (617)
Q Consensus 93 ~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~ 171 (617)
.... ...+....+.+++.|+.+. .+..++..+.........+. ... ....... .+. +++.|+.++.
T Consensus 107 -~h~~--~~~~~~~~~~~l~s~~~~~------~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~-~l~s~~~d~~ 173 (318)
T 4ggc_A 107 -SHSA--RVGSLSWNSYILSSGSRSG------HIHHHDVRVAEHHVATLSGH--SQE-VCGLRWAPDGR-HLASGGNDNL 173 (318)
T ss_dssp -CCSS--CEEEEEEETTEEEEEETTS------EEEEEETTSSSCEEEEEECC--SSC-EEEEEECTTSS-EEEEEETTSC
T ss_pred -Cccc--eEEEeecCCCEEEEEecCC------ceEeeecCCCceeEEEEcCc--cCc-eEEEEEcCCCC-EEEEEecCcc
Confidence 1111 1223334455666665433 34555555443322111111 111 1122222 445 6677776643
Q ss_pred CCCCeEEEEECCCCcEE--EeecCCCCCCCCcceEEEEE--CC-EEEEEecCCCCCccceEEEEECCCCcEEEeecCCCC
Q 007111 172 KTLNDLYSLDFETMIWT--RIKIRGFHPSPRAGCCGVLC--GT-KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS 246 (617)
Q Consensus 172 ~~~n~v~~yD~~t~~W~--~~~~~g~~P~~R~~ha~v~~--~~-~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~ 246 (617)
+.+||..++.-. ...... .....-.+.+.. +. .+++.+|... ..+.++|............
T Consensus 174 -----i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~i~lwd~~~~~~~~~~~~--- 239 (318)
T 4ggc_A 174 -----VNVWPSAPGEGGWVPLQTFT--QHQGAVKAVAWCPWQSNVLATGGGTSD----RHIRIWNVCSGACLSAVDA--- 239 (318)
T ss_dssp -----EEEEESSCBTTBSCCSEEEC--CCCSCEEEEEECTTSTTEEEEEECTTT----CEEEEEETTTCCEEEEEEC---
T ss_pred -----eeEEECCCCcccccceeeec--ccCCceEEEEecCCCCcEEEEEecCCC----CEEEEEecccccccccccc---
Confidence 888998764311 111110 011111222222 33 3444444332 3467788877654443311
Q ss_pred CCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 247 SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 247 ~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
........+. .....+++.+|.. -..|.+||+.+.+
T Consensus 240 ----~~~v~~~~~~-~~~~~~~~~sg~~---d~~i~iwd~~~~~ 275 (318)
T 4ggc_A 240 ----HSQVCSILWS-PHYKELISGHGFA---QNQLVIWKYPTMA 275 (318)
T ss_dssp ----SSCEEEEEEE-TTTTEEEEEECTT---TCCEEEEETTTCC
T ss_pred ----eeeeeeeeec-ccccceEEEEEcC---CCEEEEEECCCCc
Confidence 1112223333 2345566555542 2368899987654
No 199
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=92.28 E-value=4.3 Score=45.60 Aligned_cols=245 Identities=13% Similarity=0.063 Sum_probs=120.5
Q ss_pred cceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 13 LDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 13 ~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
...+++.+.....|..+......... ..........+-+++.++|+-.. .+.....++++|+.++.... . .
T Consensus 93 ~~~l~~~~~~~~~~~~l~d~~~~a~~-----~~~~~~~~~~SPDG~~la~~~~~-~G~~~~~i~v~dl~tg~~~~-~--~ 163 (695)
T 2bkl_A 93 KAILYWRQGESGQEKVLLDPNGWSKD-----GTVSLGTWAVSWDGKKVAFAQKP-NAADEAVLHVIDVDSGEWSK-V--D 163 (695)
T ss_dssp SCEEEEEESTTSCCEEEECGGGSSSS-----SCEEEEEEEECTTSSEEEEEEEE-TTCSCCEEEEEETTTCCBCS-S--C
T ss_pred EEEEEEEcCCCCCcEEEEchHHhccC-----CCEEEEEEEECCCCCEEEEEECC-CCCceEEEEEEECCCCCCcC-C--c
Confidence 45678888777777766431110000 00111111222256655554331 22233589999999987631 1 1
Q ss_pred CCCCCcceeEEEEECCEEEEEeecCCCC-------CccCeEEEEECCCCcE--EEeecCCCCCC-CCcccEEEEE-CCcE
Q 007111 93 DIPVARSGHTVVRASSVLILFGGEDGKR-------RKLNDLHMFDLKSLTW--LPLHCTGTGPS-PRSNHVAALY-DDKN 161 (617)
Q Consensus 93 ~~P~~R~~~s~~~~~~~IYv~GG~~~~~-------~~~~~v~~yD~~t~~W--~~l~~~g~~P~-~R~~h~a~~~-~~~~ 161 (617)
.++.......+-.-+++.++++..+..+ .....++++++.+..- ..+. ..+. +......... ++++
T Consensus 164 ~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~---~~~~~~~~~~~~~~SpDG~~ 240 (695)
T 2bkl_A 164 VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH---ERTGDPTTFLQSDLSRDGKY 240 (695)
T ss_dssp CBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE---CCCCCTTCEEEEEECTTSCC
T ss_pred ccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE---ecCCCCEEEEEEEECCCCCE
Confidence 1222221211222255556665554321 1356799999987763 2221 1111 1222223332 4554
Q ss_pred EEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCc---EE
Q 007111 162 LLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE---WS 238 (617)
Q Consensus 162 LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~---W~ 238 (617)
|++...... ..+++|.+|..+..|..+... .... ...+..++.+|+.... ......++.+|+.+.. |.
T Consensus 241 l~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~---~~~~--~~~~~~~g~l~~~s~~--~~~~~~l~~~d~~~~~~~~~~ 311 (695)
T 2bkl_A 241 LFVYILRGW--SENDVYWKRPGEKDFRLLVKG---VGAK--YEVHAWKDRFYVLTDE--GAPRQRVFEVDPAKPARASWK 311 (695)
T ss_dssp EEEEEEETT--TEEEEEEECTTCSSCEEEEEC---SSCC--EEEEEETTEEEEEECT--TCTTCEEEEEBTTBCSGGGCE
T ss_pred EEEEEeCCC--CceEEEEEcCCCCceEEeecC---CCce--EEEEecCCcEEEEECC--CCCCCEEEEEeCCCCCccCCe
Confidence 444333221 345789998877888887653 1111 2222245556665432 2223679999987654 88
Q ss_pred EeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 239 VAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 239 ~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
.+.... .......+.+. ++.+++.+..++ ...++++++..
T Consensus 312 ~l~~~~-----~~~~l~~~~~~---~~~lv~~~~~dg--~~~l~~~~~~g 351 (695)
T 2bkl_A 312 EIVPED-----SSASLLSVSIV---GGHLSLEYLKDA--TSEVRVATLKG 351 (695)
T ss_dssp EEECCC-----SSCEEEEEEEE---TTEEEEEEEETT--EEEEEEEETTC
T ss_pred EEecCC-----CCCeEEEEEEE---CCEEEEEEEECC--EEEEEEEeCCC
Confidence 765211 11112222332 366776665443 34788888754
No 200
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=92.27 E-value=8.9 Score=37.32 Aligned_cols=191 Identities=13% Similarity=0.084 Sum_probs=97.3
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 134 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~ 134 (617)
++.+|+++... ..+++||+.+. ...+.. +. ....+++.. ++.+|+.... ...+++||+.+.
T Consensus 39 g~~l~~~~~~~------~~i~~~~~~~~-~~~~~~----~~-~~~~~l~~~~dg~l~v~~~~------~~~i~~~d~~~g 100 (296)
T 3e5z_A 39 RSAVIFSDVRQ------NRTWAWSDDGQ-LSPEMH----PS-HHQNGHCLNKQGHLIACSHG------LRRLERQREPGG 100 (296)
T ss_dssp GTEEEEEEGGG------TEEEEEETTSC-EEEEES----SC-SSEEEEEECTTCCEEEEETT------TTEEEEECSTTC
T ss_pred CCEEEEEeCCC------CEEEEEECCCC-eEEEEC----CC-CCcceeeECCCCcEEEEecC------CCeEEEEcCCCC
Confidence 34588887542 36999999988 666652 22 122334332 5677765421 246999999888
Q ss_pred cEEEeecC-CCCCCCCcccEEEEE-CCcEEEEE----ccCC--------CCCCCCeEEEEECCCCcEEEeecCCCCCCCC
Q 007111 135 TWLPLHCT-GTGPSPRSNHVAALY-DDKNLLIF----GGSS--------KSKTLNDLYSLDFETMIWTRIKIRGFHPSPR 200 (617)
Q Consensus 135 ~W~~l~~~-g~~P~~R~~h~a~~~-~~~~LyV~----GG~~--------~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R 200 (617)
+...+... ...+..+.. .+++. +++ +|+. |... .......+++||+. +....+... ..
T Consensus 101 ~~~~~~~~~~~~~~~~~~-~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~-----~~ 172 (296)
T 3e5z_A 101 EWESIADSFEGKKLNSPN-DVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRD-----RV 172 (296)
T ss_dssp CEEEEECEETTEECCCCC-CEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECC-----CS
T ss_pred cEEEEeeccCCCCCCCCC-CEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecC-----CC
Confidence 87766311 011111111 23333 455 8876 4321 01113479999987 666554331 11
Q ss_pred cceEEEEE-CCEEEEEecCCCCCccceEEEEECC-CCcE-EEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCC
Q 007111 201 AGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL-KGEW-SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP 277 (617)
Q Consensus 201 ~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~-~~~W-~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~ 277 (617)
.-.+++.. ++++++.+... ..+++||+. .... ......... .. ....+.+. .++.||+..+
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~-----~~i~~~~~~~~g~~~~~~~~~~~~--~~--~p~~i~~d--~~G~l~v~~~----- 236 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGD-----NATHRYCLNARGETEYQGVHFTVE--PG--KTDGLRVD--AGGLIWASAG----- 236 (296)
T ss_dssp SEEEEEECTTSCEEEEETTT-----TEEEEEEECSSSCEEEEEEEECCS--SS--CCCSEEEB--TTSCEEEEET-----
T ss_pred CCccEEECCCCCEEEEeCCC-----CeEEEEEECCCCcCcCCCeEeeCC--CC--CCCeEEEC--CCCCEEEEcC-----
Confidence 11233333 55555544322 468899986 4455 211111100 00 01112333 2356777662
Q ss_pred CCeEEEEECCCC
Q 007111 278 SNQVEVLSIEKN 289 (617)
Q Consensus 278 ~~dV~vyd~~~~ 289 (617)
+.|.+||+...
T Consensus 237 -~~v~~~~~~g~ 247 (296)
T 3e5z_A 237 -DGVHVLTPDGD 247 (296)
T ss_dssp -TEEEEECTTSC
T ss_pred -CeEEEECCCCC
Confidence 36899998743
No 201
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=92.11 E-value=12 Score=38.33 Aligned_cols=66 Identities=15% Similarity=0.313 Sum_probs=38.9
Q ss_pred CCEEEEEecCCC-----CCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEE
Q 007111 209 GTKWYIAGGGSR-----KKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEV 283 (617)
Q Consensus 209 ~~~IyI~GG~s~-----~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~v 283 (617)
++++|+....+. ......++++|+.+.+-..- .+. .. .++ +.+..++ ..||+.++ +.|.+
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~--i~~----~~-p~~-ia~spdg-~~l~v~n~------~~v~v 329 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR--IPG----RD-ALS-MTIDQQR-NLMLTLDG------GNVNV 329 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE--EEC----TT-CCE-EEEETTT-TEEEEECS------SCEEE
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE--Eec----CC-eeE-EEECCCC-CEEEEeCC------CeEEE
Confidence 578998754111 11246899999988753321 111 22 233 3444333 47776653 58999
Q ss_pred EECCCC
Q 007111 284 LSIEKN 289 (617)
Q Consensus 284 yd~~~~ 289 (617)
||..+.
T Consensus 330 ~D~~t~ 335 (361)
T 2oiz_A 330 YDISQP 335 (361)
T ss_dssp EECSSS
T ss_pred EECCCC
Confidence 999886
No 202
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=92.04 E-value=5.3 Score=45.33 Aligned_cols=207 Identities=6% Similarity=-0.051 Sum_probs=101.2
Q ss_pred EEEEEECCCCcEEEeeccCCCC--CCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCC------CcEE---Eeec
Q 007111 74 SVWTFDTETECWSVVEAKGDIP--VARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKS------LTWL---PLHC 141 (617)
Q Consensus 74 ~v~~yd~~t~~W~~~~~~g~~P--~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t------~~W~---~l~~ 141 (617)
.+++||+.++++.......... ....-++++.. ++.||+ |... .-+++||+.+ ..+. ....
T Consensus 393 GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~------~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 465 (758)
T 3ott_A 393 SINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCL------GGIFVVDKHKLMQSTSGQYIAEQNYSV 465 (758)
T ss_dssp EEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESS------SCEEEEEHHHHHHCCSSEEECSEEECG
T ss_pred cHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECC------CceEEEccccccccCCcceeccccccc
Confidence 5999999999988765321111 11122233333 367877 3221 2378888653 1232 1111
Q ss_pred CCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCC
Q 007111 142 TGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSR 220 (617)
Q Consensus 142 ~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~ 220 (617)
...++... -.+.+.-.+..|+|+||... .+++||+.++++..+...+ .+......+++.. ++.||+.. . .
T Consensus 466 ~~~l~~~~-i~~i~~d~~g~lWi~~~t~~-----Gl~~~d~~~~~~~~~~~~~-~~~~~~~~~i~~d~~g~lWigt-~-~ 536 (758)
T 3ott_A 466 HNGLSGMF-INQIIPDNEGNVWVLLYNNK-----GIDKINPRTREVTKLFADE-LTGEKSPNYLLCDEDGLLWVGF-H-G 536 (758)
T ss_dssp GGTCSCSC-EEEEEECTTSCEEEEETTCS-----SEEEEETTTTEEEEECTTT-SCGGGCEEEEEECTTSCEEEEE-T-T
T ss_pred ccccccce-eeeEEEcCCCCEEEEccCCC-----CcEEEeCCCCceEEecCCC-cCCCcccceEEECCCCCEEEEe-c-C
Confidence 11222211 11222222334888766543 3999999999998874321 1111111223332 57788643 2 1
Q ss_pred CCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcccc------c
Q 007111 221 KKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSM------G 294 (617)
Q Consensus 221 ~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W~~------~ 294 (617)
-+.+||+.+..+..... .......-++ + +. +++.|++.... -+.+||+.+.+... .
T Consensus 537 -----Gl~~~~~~~~~~~~~~~---~gl~~~~i~~-i-~~--~~g~lWi~t~~------Gl~~~~~~~~~~~~~~~~~~~ 598 (758)
T 3ott_A 537 -----GVMRINPKDESQQSISF---GSFSNNEILS-M-TC--VKNSIWVSTTN------GLWIIDRKTMDARQQNMTNKR 598 (758)
T ss_dssp -----EEEEECC--CCCCBCCC---CC---CCEEE-E-EE--ETTEEEEEESS------CEEEEETTTCCEEEC--CCCC
T ss_pred -----ceEEEecCCCceEEecc---cCCCccceEE-E-EE--CCCCEEEECCC------CeEEEcCCCceeEEecCCCCc
Confidence 28899998877665421 1111122222 2 22 24678765532 47888887665321 1
Q ss_pred cccccCccCCceeeeccCCC
Q 007111 295 RRSTPNAKGPGQLLFEKRSS 314 (617)
Q Consensus 295 w~~~~~~~~~~v~vfGG~~~ 314 (617)
...+.....+..++|||..+
T Consensus 599 ~~~~~~~~~~G~l~fG~~~G 618 (758)
T 3ott_A 599 FTSLLFDPKEDCVYLGGADG 618 (758)
T ss_dssp CSEEEEETTTTEEEEECBSE
T ss_pred eeeeEEECCCCcEEEecCCc
Confidence 11122212466788998744
No 203
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=91.84 E-value=11 Score=37.54 Aligned_cols=147 Identities=13% Similarity=0.107 Sum_probs=75.6
Q ss_pred ECCEEEEEcccCCCCCCceEEEEEECCCCc-EEEeeccCCCCCCcceeEEEE-E--CCEEEEEeecCCCCCccCeEEEEE
Q 007111 55 WGKKVLLVGGKTDSGSDRVSVWTFDTETEC-WSVVEAKGDIPVARSGHTVVR-A--SSVLILFGGEDGKRRKLNDLHMFD 130 (617)
Q Consensus 55 ~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~g~~P~~R~~~s~~~-~--~~~IYv~GG~~~~~~~~~~v~~yD 130 (617)
.++.|.++-.. ..+..||..+.. ...... +....-.+++. - ++.+++.|+.++ .+.+||
T Consensus 93 ~D~~i~~w~~~-------~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~s~s~dg------~i~~wd 155 (343)
T 3lrv_A 93 PCNRLLLLYPG-------NQITILDSKTNKVLREIEV----DSANEIIYMYGHNEVNTEYFIWADNRG------TIGFQS 155 (343)
T ss_dssp STTEEEEEETT-------TEEEEEETTTCCEEEEEEC----CCSSCEEEEECCC---CCEEEEEETTC------CEEEEE
T ss_pred CCCeEEEEEcc-------CceEEeecCCcceeEEeec----CCCCCEEEEEcCCCCCCCEEEEEeCCC------cEEEEE
Confidence 35566666432 256677877776 333321 11111111111 1 456777777654 388999
Q ss_pred CCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEE--EeecCCCCCCCCcceEEEEE
Q 007111 131 LKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWT--RIKIRGFHPSPRAGCCGVLC 208 (617)
Q Consensus 131 ~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~--~~~~~g~~P~~R~~ha~v~~ 208 (617)
+.+..-.... .......-.+++...+..+++.|+.++ .|..||+.++... .+.. .....-.+++..
T Consensus 156 ~~~~~~~~~~---~~~~~~~i~~~~~~pdg~~lasg~~dg-----~i~iwd~~~~~~~~~~~~~----~h~~~v~~l~fs 223 (343)
T 3lrv_A 156 YEDDSQYIVH---SAKSDVEYSSGVLHKDSLLLALYSPDG-----ILDVYNLSSPDQASSRFPV----DEEAKIKEVKFA 223 (343)
T ss_dssp SSSSCEEEEE---CCCSSCCCCEEEECTTSCEEEEECTTS-----CEEEEESSCTTSCCEECCC----CTTSCEEEEEEC
T ss_pred CCCCcEEEEE---ecCCCCceEEEEECCCCCEEEEEcCCC-----EEEEEECCCCCCCccEEec----cCCCCEEEEEEe
Confidence 9888765432 111111122344444443777788765 4999999877543 2211 011112233333
Q ss_pred -CCEEEEEecCCCCCccceEEEEECCCCc
Q 007111 209 -GTKWYIAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 209 -~~~IyI~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
++..++.|+ .+ .+.+||+.+..
T Consensus 224 ~~g~~l~s~~-~~-----~v~iwd~~~~~ 246 (343)
T 3lrv_A 224 DNGYWMVVEC-DQ-----TVVCFDLRKDV 246 (343)
T ss_dssp TTSSEEEEEE-SS-----BEEEEETTSST
T ss_pred CCCCEEEEEe-CC-----eEEEEEcCCCC
Confidence 556666666 22 58899987653
No 204
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=91.75 E-value=13 Score=37.95 Aligned_cols=184 Identities=11% Similarity=0.154 Sum_probs=91.5
Q ss_pred EEEEEECCCCcEEEeeccCCCCCCcce-eEEEEE---CCEEEEEeecCCCCCccCeEEEEECCCC--cEEEeecCCCCCC
Q 007111 74 SVWTFDTETECWSVVEAKGDIPVARSG-HTVVRA---SSVLILFGGEDGKRRKLNDLHMFDLKSL--TWLPLHCTGTGPS 147 (617)
Q Consensus 74 ~v~~yd~~t~~W~~~~~~g~~P~~R~~-~s~~~~---~~~IYv~GG~~~~~~~~~~v~~yD~~t~--~W~~l~~~g~~P~ 147 (617)
.+..||+.+..-...-.. ..+..... .....+ ++.+++.||.++. +.+||+... .-..+. +. .
T Consensus 181 ~i~~wd~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~------v~~wd~~~~~~~~~~~~--~h--~ 249 (380)
T 3iz6_a 181 TCVLWDVTTGQRISIFGS-EFPSGHTADVLSLSINSLNANMFISGSCDTT------VRLWDLRITSRAVRTYH--GH--E 249 (380)
T ss_dssp CEEEECTTTCCEEEEECC-CSSSSCCSCEEEEEECSSSCCEEEEEETTSC------EEEEETTTTCCCCEEEC--CC--S
T ss_pred cEEEEEcCCCcEEEEeec-ccCCCCccCeEEEEeecCCCCEEEEEECCCe------EEEEECCCCCcceEEEC--Cc--C
Confidence 478888888764432210 12222111 122222 5678888887653 788888632 122221 10 0
Q ss_pred CCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCC--CCC-cceEEEEE-CCEEEEEecCCCCC
Q 007111 148 PRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHP--SPR-AGCCGVLC-GTKWYIAGGGSRKK 222 (617)
Q Consensus 148 ~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P--~~R-~~ha~v~~-~~~IyI~GG~s~~~ 222 (617)
.. -.+++.. ++. .++.|+.++. +..||+.++.-.......... ... .-.+++.. ++.+++.|+..+
T Consensus 250 ~~-v~~v~~~p~~~-~l~s~s~D~~-----i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg-- 320 (380)
T 3iz6_a 250 GD-INSVKFFPDGQ-RFGTGSDDGT-----CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG-- 320 (380)
T ss_dssp SC-CCEEEECTTSS-EEEEECSSSC-----EEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTS--
T ss_pred CC-eEEEEEecCCC-eEEEEcCCCe-----EEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCC--
Confidence 11 1133333 345 7788887754 899999887655443211000 000 11233332 667777776543
Q ss_pred ccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 223 RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 223 ~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
.+++||........... ...........++.+.. ++.+++.||.++ .|.+|++..
T Consensus 321 ---~i~vwd~~~~~~~~~~~--~~~~~h~~~v~~l~~s~--dg~~l~sgs~D~----~i~iW~~~~ 375 (380)
T 3iz6_a 321 ---DCYVWDTLLAEMVLNLG--TLQNSHEGRISCLGLSS--DGSALCTGSWDK----NLKIWAFSG 375 (380)
T ss_dssp ---CEEEEETTTCCEEEEEC--CSCSSCCCCCCEEEECS--SSSEEEEECTTS----CEEEEECCS
T ss_pred ---CEEEEECCCCceEEEEe--cccCCCCCceEEEEECC--CCCEEEEeeCCC----CEEEEecCC
Confidence 48899987765433211 00000111223334432 345778888765 467777654
No 205
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=91.66 E-value=13 Score=38.00 Aligned_cols=151 Identities=14% Similarity=0.186 Sum_probs=78.9
Q ss_pred CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCC
Q 007111 107 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETM 185 (617)
Q Consensus 107 ~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~ 185 (617)
++.+++.|+.++ .+.+||+.+.+-...- .+. ...-.+++.. ++. .++.|+.++ .+..||+.++
T Consensus 134 dg~~l~s~~~d~------~i~iwd~~~~~~~~~~-~~h---~~~v~~~~~~p~~~-~l~s~s~d~-----~v~iwd~~~~ 197 (393)
T 1erj_A 134 DGKFLATGAEDR------LIRIWDIENRKIVMIL-QGH---EQDIYSLDYFPSGD-KLVSGSGDR-----TVRIWDLRTG 197 (393)
T ss_dssp TSSEEEEEETTS------CEEEEETTTTEEEEEE-CCC---SSCEEEEEECTTSS-EEEEEETTS-----EEEEEETTTT
T ss_pred CCCEEEEEcCCC------eEEEEECCCCcEEEEE-ccC---CCCEEEEEEcCCCC-EEEEecCCC-----cEEEEECCCC
Confidence 467777777644 4889999887654331 111 1111233333 345 667777663 4899999888
Q ss_pred cEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCC-CCCCcceEEEEEeec
Q 007111 186 IWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSS-VTSNKGFTLVLVQHK 262 (617)
Q Consensus 186 ~W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~-p~~r~~~s~v~v~~~ 262 (617)
........ .. ...+++.. ++.+++.|+..+ .+.+||+.+............. .........+.+..
T Consensus 198 ~~~~~~~~---~~--~v~~~~~~~~~~~~l~~~s~d~-----~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~- 266 (393)
T 1erj_A 198 QCSLTLSI---ED--GVTTVAVSPGDGKYIAAGSLDR-----AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR- 266 (393)
T ss_dssp EEEEEEEC---SS--CEEEEEECSTTCCEEEEEETTS-----CEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-
T ss_pred eeEEEEEc---CC--CcEEEEEECCCCCEEEEEcCCC-----cEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-
Confidence 76544332 11 11223332 567777777653 3788998876543322111110 01112233344432
Q ss_pred CCcEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 263 EKDFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 263 ~~~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
++.+++.|+.++ .|.+||+.+.
T Consensus 267 -~g~~l~s~s~d~----~v~~wd~~~~ 288 (393)
T 1erj_A 267 -DGQSVVSGSLDR----SVKLWNLQNA 288 (393)
T ss_dssp -TSSEEEEEETTS----EEEEEEC---
T ss_pred -CCCEEEEEeCCC----EEEEEECCCC
Confidence 344667787654 6888888654
No 206
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=91.65 E-value=1 Score=36.61 Aligned_cols=71 Identities=21% Similarity=0.177 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhh
Q 007111 471 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEA 541 (617)
Q Consensus 471 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~ 541 (617)
.++||+++-........+++.+.+.++++|+....+-.....|.+|+..+..+++...|+|..+...-|++
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888888888887777777777788888877777777777766655444443
No 207
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=91.65 E-value=10 Score=36.63 Aligned_cols=220 Identities=12% Similarity=0.074 Sum_probs=100.1
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDI 94 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~ 94 (617)
.+.+||..+.+-...-. ... . ........+.+++.|+.. ..+..++..+.........+
T Consensus 90 ~v~iw~~~~~~~~~~~~----------~h~-~--~~~~~~~~~~~l~s~~~~------~~~~~~~~~~~~~~~~~~~~-- 148 (318)
T 4ggc_A 90 EVQLWDVQQQKRLRNMT----------SHS-A--RVGSLSWNSYILSSGSRS------GHIHHHDVRVAEHHVATLSG-- 148 (318)
T ss_dssp EEEEEETTTTEEEEEEE----------CCS-S--CEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEEC--
T ss_pred cEEEeecCCceeEEEec----------Ccc-c--eEEEeecCCCEEEEEecC------CceEeeecCCCceeEEEEcC--
Confidence 57888888776433221 000 1 122333445555555542 23555555554432222111
Q ss_pred CCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEE--EeecCCCCCCCCcccEEEEE--CCcEEEEEccCCC
Q 007111 95 PVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWL--PLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSK 170 (617)
Q Consensus 95 P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~--~l~~~g~~P~~R~~h~a~~~--~~~~LyV~GG~~~ 170 (617)
.............+.+++.|+.++ .+.+||..+.+-. ..........+ -...+.. +...+++.+|...
T Consensus 149 ~~~~~~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~ 220 (318)
T 4ggc_A 149 HSQEVCGLRWAPDGRHLASGGNDN------LVNVWPSAPGEGGWVPLQTFTQHQGA--VKAVAWCPWQSNVLATGGGTSD 220 (318)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTS------CEEEEESSCBTTBSCCSEEECCCCSC--EEEEEECTTSTTEEEEEECTTT
T ss_pred ccCceEEEEEcCCCCEEEEEecCc------ceeEEECCCCcccccceeeecccCCc--eEEEEecCCCCcEEEEEecCCC
Confidence 111111122223456666666544 3778888764311 11000011111 1112222 3343444444432
Q ss_pred CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCC
Q 007111 171 SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSV 248 (617)
Q Consensus 171 ~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p 248 (617)
..+..+|..+......... ... ...++.. ++.+++.+|..+ ..+.+||+.+.+-...- ..
T Consensus 221 ----~~i~lwd~~~~~~~~~~~~---~~~--v~~~~~~~~~~~~~~~sg~~d----~~i~iwd~~~~~~~~~l--~g--- 282 (318)
T 4ggc_A 221 ----RHIRIWNVCSGACLSAVDA---HSQ--VCSILWSPHYKELISGHGFAQ----NQLVIWKYPTMAKVAEL--KG--- 282 (318)
T ss_dssp ----CEEEEEETTTCCEEEEEEC---SSC--EEEEEEETTTTEEEEEECTTT----CCEEEEETTTCCEEEEE--CC---
T ss_pred ----CEEEEEecccccccccccc---eee--eeeeeecccccceEEEEEcCC----CEEEEEECCCCcEEEEE--cC---
Confidence 3578889877766554432 111 1222222 556666656443 34889998876533221 11
Q ss_pred CCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 249 TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 249 ~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
-......+.+.. ++.+++.||.++ .|.++|+..
T Consensus 283 -H~~~V~~l~~sp--dg~~l~S~s~D~----~v~iWd~~~ 315 (318)
T 4ggc_A 283 -HTSRVLSLTMSP--DGATVASAAADE----TLRLWRCFE 315 (318)
T ss_dssp -CSSCEEEEEECT--TSSCEEEEETTT----EEEEECCSC
T ss_pred -CCCCEEEEEEcC--CCCEEEEEecCC----eEEEEECCC
Confidence 111233344432 244677788764 567777643
No 208
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=91.61 E-value=4.1 Score=39.80 Aligned_cols=186 Identities=11% Similarity=0.029 Sum_probs=88.5
Q ss_pred eEEEEECCCCcEEEc-cccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccC---------CCCCCceEEEEEECCCC
Q 007111 15 DVQVLNFDRFSWTAA-SSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKT---------DSGSDRVSVWTFDTETE 83 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l-~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~---------~~~~~~~~v~~yd~~t~ 83 (617)
.+++||+. .+...+ .... ...+...-++++.. ++++|+..... ........+++||+. .
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~--------~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g 162 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDS--------EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G 162 (314)
T ss_dssp EEEEEETT-SCEEECCSBCT--------TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S
T ss_pred CEEEEeCC-CCEEEEEeccC--------CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C
Confidence 58888888 666655 3210 01111112344443 56788765431 011123579999987 6
Q ss_pred cEEEeeccCCCCCCcceeEEEEE-----CC-EEEEEeecCCCCCccCeEEEEECC-CCcEEEeecCCCCCCC--CcccEE
Q 007111 84 CWSVVEAKGDIPVARSGHTVVRA-----SS-VLILFGGEDGKRRKLNDLHMFDLK-SLTWLPLHCTGTGPSP--RSNHVA 154 (617)
Q Consensus 84 ~W~~~~~~g~~P~~R~~~s~~~~-----~~-~IYv~GG~~~~~~~~~~v~~yD~~-t~~W~~l~~~g~~P~~--R~~h~a 154 (617)
+...+... .. ....++.. ++ .+|+.... .+.+++||+. +.++........++.. ..-..+
T Consensus 163 ~~~~~~~~--~~---~~~~i~~~~~~d~dg~~l~v~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i 231 (314)
T 1pjx_A 163 QMIQVDTA--FQ---FPNGIAVRHMNDGRPYQLIVAETP------TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM 231 (314)
T ss_dssp CEEEEEEE--ES---SEEEEEEEECTTSCEEEEEEEETT------TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred CEEEeccC--CC---CcceEEEecccCCCCCEEEEEECC------CCeEEEEECCCCCccccceEEEECCCCCCCCCCce
Confidence 55544311 11 12233333 23 56665422 2568999876 4444322111112211 111223
Q ss_pred EEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CC-EEEEEecCCCCCccceEEEEEC
Q 007111 155 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT-KWYIAGGGSRKKRHAETLIFDI 232 (617)
Q Consensus 155 ~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~-~IyI~GG~s~~~~~~~v~~yDl 232 (617)
+.-.+..+|+..... +.|.+||+.++........ +. ..-.+++.. ++ .+|+.+... ..+++|++
T Consensus 232 ~~d~~G~l~v~~~~~-----~~i~~~d~~~g~~~~~~~~---~~-~~~~~i~~~~dg~~l~v~~~~~-----~~l~~~~~ 297 (314)
T 1pjx_A 232 DFDEDNNLLVANWGS-----SHIEVFGPDGGQPKMRIRC---PF-EKPSNLHFKPQTKTIFVTEHEN-----NAVWKFEW 297 (314)
T ss_dssp EEBTTCCEEEEEETT-----TEEEEECTTCBSCSEEEEC---SS-SCEEEEEECTTSSEEEEEETTT-----TEEEEEEC
T ss_pred EECCCCCEEEEEcCC-----CEEEEEcCCCCcEeEEEeC---CC-CCceeEEECCCCCEEEEEeCCC-----CeEEEEeC
Confidence 333333377764322 3599999985543222221 21 122233332 34 477775433 35889988
Q ss_pred CCC
Q 007111 233 LKG 235 (617)
Q Consensus 233 ~~~ 235 (617)
...
T Consensus 298 ~~~ 300 (314)
T 1pjx_A 298 QRN 300 (314)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 209
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=91.48 E-value=13 Score=39.71 Aligned_cols=174 Identities=8% Similarity=0.025 Sum_probs=83.2
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 135 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~ 135 (617)
+++.++.|+.+ ..+.+||.....-..+. . ...........-++.+++.|+.+. .+.+||.....
T Consensus 396 dg~~l~~~~~d------~~v~~~~~~~~~~~~~~---~-~~~~v~~~~~s~d~~~l~~~~~d~------~v~~w~~~~~~ 459 (577)
T 2ymu_A 396 DGQTIASASDD------KTVKLWNRNGQLLQTLT---G-HSSSVWGVAFSPDDQTIASASDDK------TVKLWNRNGQL 459 (577)
T ss_dssp TSSCEEEEETT------SEEEEECTTCCEEEEEE---C-CSSCEEEEEECTTSSEEEEEETTS------EEEEEETTSCE
T ss_pred CCCEEEEEeCC------CEEEEEeCCCCEEEEec---C-CCCCeEEEEECCCCCEEEEEcCCC------EEEEEECCCCE
Confidence 45666666652 25777886544433333 1 111111111122566677776543 47888876555
Q ss_pred EEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEE
Q 007111 136 WLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWY 213 (617)
Q Consensus 136 W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~Iy 213 (617)
-..+. +. . ..-.+++.. +++ +++.|+.++ .|..||.....-..+... ... -.+++.. +++++
T Consensus 460 ~~~~~--~~--~-~~v~~~~~spd~~-~las~~~d~-----~i~iw~~~~~~~~~~~~h----~~~-v~~l~~s~dg~~l 523 (577)
T 2ymu_A 460 LQTLT--GH--S-SSVRGVAFSPDGQ-TIASASDDK-----TVKLWNRNGQLLQTLTGH----SSS-VRGVAFSPDGQTI 523 (577)
T ss_dssp EEEEE--CC--S-SCEEEEEECTTSC-EEEEEETTS-----EEEEEETTSCEEEEEECC----SSC-EEEEEECTTSSCE
T ss_pred EEEEc--CC--C-CCEEEEEEcCCCC-EEEEEeCCC-----EEEEEcCCCCEEEEEeCC----CCC-EEEEEEcCCCCEE
Confidence 44442 11 1 111123333 445 677777653 488888654433333221 111 1223332 56666
Q ss_pred EEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCC
Q 007111 214 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK 275 (617)
Q Consensus 214 I~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~ 275 (617)
+.||..+ .+.+||........+... ......+.+..+ +..++.||.++
T Consensus 524 ~s~~~dg-----~v~lwd~~~~~~~~~~~h-------~~~v~~~~fs~d--g~~l~s~~~D~ 571 (577)
T 2ymu_A 524 ASASDDK-----TVKLWNRNGQLLQTLTGH-------SSSVWGVAFSPD--GQTIASASSDK 571 (577)
T ss_dssp EEEETTS-----EEEEECTTSCEEEEEECC-------SSCEEEEEECTT--SSCEEEEETTS
T ss_pred EEEECcC-----EEEEEeCCCCEEEEEcCC-------CCCEEEEEEcCC--CCEEEEEeCCC
Confidence 6776542 477888655444443211 112333444432 33556677654
No 210
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=91.36 E-value=1.9 Score=45.18 Aligned_cols=145 Identities=10% Similarity=0.086 Sum_probs=70.8
Q ss_pred EEEEeecCCCCCccCeEEEEECCCC---cEEEeecCCCC-CCCCcccEEEEEC-CcEEEEEccCCCCCCCCeEEEEECCC
Q 007111 110 LILFGGEDGKRRKLNDLHMFDLKSL---TWLPLHCTGTG-PSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFET 184 (617)
Q Consensus 110 IYv~GG~~~~~~~~~~v~~yD~~t~---~W~~l~~~g~~-P~~R~~h~a~~~~-~~~LyV~GG~~~~~~~n~v~~yD~~t 184 (617)
+++.|+.++ .+.+||+.+. .+... ....+ .....-+.++... +..+++.|+.++ .|.+||+.+
T Consensus 196 ~l~s~~~dg------~i~vwd~~~~~~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg-----~i~i~d~~~ 263 (430)
T 2xyi_A 196 YLLSASDDH------TICLWDINATPKEHRVID-AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ-----KLMIWDTRN 263 (430)
T ss_dssp EEEEECTTS------CEEEEETTSCCBGGGEEE-CSEEECCCSSCEEEEEECSSCTTEEEEEETTS-----EEEEEETTC
T ss_pred eEEEEeCCC------eEEEEeCCCCCCCCceec-cceeecCCCCCEeeeEEeCCCCCEEEEEeCCC-----eEEEEECCC
Confidence 677776544 4888998772 22210 00011 1111122233332 333777777653 499999976
Q ss_pred Cc----EEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCc--EEEeecCCCCCCCCCcceEE
Q 007111 185 MI----WTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGE--WSVAITSPSSSVTSNKGFTL 256 (617)
Q Consensus 185 ~~----W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~--W~~l~~~~~~~p~~r~~~s~ 256 (617)
.. ...+.. ....-.+++.. +..+++.|+..+ .+.+||+.... -..+. ........
T Consensus 264 ~~~~~~~~~~~~-----~~~~v~~i~~~p~~~~~l~tg~~dg-----~v~vwd~~~~~~~~~~~~-------~h~~~v~~ 326 (430)
T 2xyi_A 264 NNTSKPSHTVDA-----HTAEVNCLSFNPYSEFILATGSADK-----TVALWDLRNLKLKLHSFE-------SHKDEIFQ 326 (430)
T ss_dssp SCSSSCSEEEEC-----CSSCEEEEEECSSCTTEEEEEETTS-----EEEEEETTCTTSCSEEEE-------CCSSCEEE
T ss_pred CCCCcceeEeec-----CCCCeEEEEeCCCCCCEEEEEeCCC-----eEEEEeCCCCCCCeEEee-------cCCCCEEE
Confidence 52 111111 11111223332 334788887653 48899987632 11111 01122333
Q ss_pred EEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 257 VLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 257 v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
+.+... ...+++.||.++ .|.+||+..
T Consensus 327 i~~sp~-~~~~l~s~~~d~----~i~iwd~~~ 353 (430)
T 2xyi_A 327 VQWSPH-NETILASSGTDR----RLHVWDLSK 353 (430)
T ss_dssp EEECSS-CTTEEEEEETTS----CCEEEEGGG
T ss_pred EEECCC-CCCEEEEEeCCC----cEEEEeCCC
Confidence 444322 345777777654 578888865
No 211
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=91.36 E-value=13 Score=37.42 Aligned_cols=216 Identities=11% Similarity=0.084 Sum_probs=109.0
Q ss_pred CCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeE
Q 007111 23 RFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHT 102 (617)
Q Consensus 23 t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s 102 (617)
..+|..+... .+.+.....++...++.+|+.|.. ..+++-.-.-.+|+.+.....+|.. .+.
T Consensus 65 G~tW~~~~~~---------~~~~~~~~~~i~~~~~~~~~~g~~-------g~i~~S~DgG~tW~~~~~~~~~~~~--~~~ 126 (327)
T 2xbg_A 65 GQTWEPRTLV---------LDHSDYRFNSVSFQGNEGWIVGEP-------PIMLHTTDGGQSWSQIPLDPKLPGS--PRL 126 (327)
T ss_dssp TSSCEECCCC---------CSCCCCEEEEEEEETTEEEEEEET-------TEEEEESSTTSSCEECCCCTTCSSC--EEE
T ss_pred CCCCeECCCC---------CCCCCccEEEEEecCCeEEEEECC-------CeEEEECCCCCCceECccccCCCCC--eEE
Confidence 4579887641 111222234455557788887532 1455544345789998742222222 223
Q ss_pred EE-EECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEE
Q 007111 103 VV-RASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLD 181 (617)
Q Consensus 103 ~~-~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD 181 (617)
++ .-++.+|+.|.. ..+++-+-.-.+|+.+.. +.+..-+.++...+..+|++|.. + .+++-+
T Consensus 127 i~~~~~~~~~~~~~~-------g~v~~S~DgG~tW~~~~~----~~~~~~~~~~~~~~~~~~~~g~~-G-----~~~~S~ 189 (327)
T 2xbg_A 127 IKALGNGSAEMITNV-------GAIYRTKDSGKNWQALVQ----EAIGVMRNLNRSPSGEYVAVSSR-G-----SFYSTW 189 (327)
T ss_dssp EEEEETTEEEEEETT-------CCEEEESSTTSSEEEEEC----SCCCCEEEEEECTTSCEEEEETT-S-----SEEEEE
T ss_pred EEEECCCCEEEEeCC-------ccEEEEcCCCCCCEEeec----CCCcceEEEEEcCCCcEEEEECC-C-----cEEEEe
Confidence 33 346788887641 124444334568999852 22223344444444436666532 2 255554
Q ss_pred CC-CCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECC-CCcEEEeecCCCCCCCCCcceEEEE
Q 007111 182 FE-TMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL-KGEWSVAITSPSSSVTSNKGFTLVL 258 (617)
Q Consensus 182 ~~-t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~-~~~W~~l~~~~~~~p~~r~~~s~v~ 258 (617)
-. ...|+.+.. +.+...+.++.. ++.+|+++.. ..+++.+.+ ..+|+.+..+. .+ ...++..+.
T Consensus 190 d~gG~tW~~~~~----~~~~~~~~~~~~~~g~~~~~~~~------G~~~~s~~D~G~tW~~~~~~~--~~-~~~~~~~v~ 256 (327)
T 2xbg_A 190 EPGQTAWEPHNR----TTSRRLHNMGFTPDGRLWMIVNG------GKIAFSDPDNSENWGELLSPL--RR-NSVGFLDLA 256 (327)
T ss_dssp CTTCSSCEEEEC----CSSSCEEEEEECTTSCEEEEETT------TEEEEEETTEEEEECCCBCTT--SS-CCSCEEEEE
T ss_pred CCCCCceeECCC----CCCCccceeEECCCCCEEEEeCC------ceEEEecCCCCCeeEeccCCc--cc-CCcceEEEE
Confidence 33 578998854 234444555543 6678877642 125555433 56798864210 11 112233333
Q ss_pred EeecCCcEEEEEcCCCCCCCCeEEEEECCCCcccc
Q 007111 259 VQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSM 293 (617)
Q Consensus 259 v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W~~ 293 (617)
.. ..+.+|++|+.. .+++-.-....|..
T Consensus 257 ~~--~~~~~~~~g~~g-----~i~~S~DgG~tW~~ 284 (327)
T 2xbg_A 257 YR--TPNEVWLAGGAG-----ALLCSQDGGQTWQQ 284 (327)
T ss_dssp ES--SSSCEEEEESTT-----CEEEESSTTSSCEE
T ss_pred ec--CCCEEEEEeCCC-----eEEEeCCCCcccEE
Confidence 32 235688887642 34433333456754
No 212
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=91.23 E-value=3.9 Score=40.71 Aligned_cols=112 Identities=14% Similarity=0.077 Sum_probs=58.2
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE----CCEEEEEeecCCCCCccCeEEEEEC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA----SSVLILFGGEDGKRRKLNDLHMFDL 131 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~----~~~IYv~GG~~~~~~~~~~v~~yD~ 131 (617)
+++.++.|+.+ ..+.+||+.+.....+.. +........++.+ ++.+++.|+.+. .+.+||+
T Consensus 24 ~g~~lasgs~D------~~v~lwd~~~~~~~~~~~---l~gH~~~V~~v~~~~~~~~~~l~s~s~D~------~v~iWd~ 88 (316)
T 3bg1_A 24 YGTRLATCSSD------RSVKIFDVRNGGQILIAD---LRGHEGPVWQVAWAHPMYGNILASCSYDR------KVIIWRE 88 (316)
T ss_dssp GGCEEEEEETT------TEEEEEEEETTEEEEEEE---EECCSSCEEEEEECCGGGSSCEEEEETTS------CEEEECC
T ss_pred CCCEEEEEeCC------CeEEEEEecCCCcEEEEE---EcCCCccEEEEEeCCCCCCCEEEEEECCC------EEEEEEC
Confidence 45677777753 257777877665433321 1111111122222 256777777654 3788998
Q ss_pred CCCcEEEeecCCCCCCCCcccEEEEEC---CcEEEEEccCCCCCCCCeEEEEECCCC-cEEEe
Q 007111 132 KSLTWLPLHCTGTGPSPRSNHVAALYD---DKNLLIFGGSSKSKTLNDLYSLDFETM-IWTRI 190 (617)
Q Consensus 132 ~t~~W~~l~~~g~~P~~R~~h~a~~~~---~~~LyV~GG~~~~~~~n~v~~yD~~t~-~W~~~ 190 (617)
.+..|..+.....-. ..-.+++... +. +++.|+.++. +..||..+. .|...
T Consensus 89 ~~~~~~~~~~~~~h~--~~V~~v~~~p~~~g~-~lasgs~D~~-----i~lwd~~~~~~~~~~ 143 (316)
T 3bg1_A 89 ENGTWEKSHEHAGHD--SSVNSVCWAPHDYGL-ILACGSSDGA-----ISLLTYTGEGQWEVK 143 (316)
T ss_dssp SSSCCCEEEEECCCS--SCCCEEEECCTTTCS-CEEEECSSSC-----EEEEEECSSSCEEEC
T ss_pred CCCcceEEEEccCCC--CceEEEEECCCCCCc-EEEEEcCCCC-----EEEEecCCCCCccee
Confidence 887775542110001 1111233332 34 6777777643 788888765 57543
No 213
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=91.19 E-value=11 Score=37.76 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=14.0
Q ss_pred CCcEEEEEccCCCCCCCCeEEEEECC
Q 007111 158 DDKNLLIFGGSSKSKTLNDLYSLDFE 183 (617)
Q Consensus 158 ~~~~LyV~GG~~~~~~~n~v~~yD~~ 183 (617)
+++ +++.|+.++ .+..||+.
T Consensus 224 ~g~-~l~sgs~dg-----~v~iwd~~ 243 (343)
T 2xzm_R 224 NGK-YIATGGKDK-----KLLIWDIL 243 (343)
T ss_dssp TSS-EEEEEETTC-----EEEEEESS
T ss_pred CCC-EEEEEcCCC-----eEEEEECC
Confidence 455 677787764 48889984
No 214
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=91.13 E-value=7.7 Score=37.99 Aligned_cols=114 Identities=13% Similarity=0.163 Sum_probs=54.7
Q ss_pred CEEEEEeecCCCCCccCeEEEEECCCC--cEEEeecCCCCCCCCcccEEEEE-CC---cEEEEEccCCCCCCCCeEEEEE
Q 007111 108 SVLILFGGEDGKRRKLNDLHMFDLKSL--TWLPLHCTGTGPSPRSNHVAALY-DD---KNLLIFGGSSKSKTLNDLYSLD 181 (617)
Q Consensus 108 ~~IYv~GG~~~~~~~~~~v~~yD~~t~--~W~~l~~~g~~P~~R~~h~a~~~-~~---~~LyV~GG~~~~~~~n~v~~yD 181 (617)
+.+++.||.++. +.+||..+. .|.... .+..-...-.++.+ .+ ..+++.|+.++. +.+||
T Consensus 170 ~~~l~sgs~D~~------v~lwd~~~~~~~~~~~~---~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~-----v~iWd 235 (297)
T 2pm7_B 170 SRKFVTGGADNL------VKIWKYNSDAQTYVLES---TLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT-----CIIWT 235 (297)
T ss_dssp CCEEEEEETTSC------EEEEEEETTTTEEEEEE---EECCCSSCEEEEEECCCCSSSEEEEEEETTSC-----EEEEE
T ss_pred cceEEEEcCCCc------EEEEEEcCCCceEEEEE---EecCCCCceEEEEECCCCCCceEEEEEECCCc-----EEEEE
Confidence 356777776543 666666543 354432 11111111122222 22 237777777653 77888
Q ss_pred CCC--CcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECC-CCcEEEee
Q 007111 182 FET--MIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL-KGEWSVAI 241 (617)
Q Consensus 182 ~~t--~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~-~~~W~~l~ 241 (617)
+.+ ..|........ ..+..-.+++.. ++.+++.||..+. +.+++.. ...|..+.
T Consensus 236 ~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~las~~~D~~-----v~lw~~~~~g~w~~~~ 293 (297)
T 2pm7_B 236 QDNEQGPWKKTLLKEE-KFPDVLWRASWSLSGNVLALSGGDNK-----VTLWKENLEGKWEPAG 293 (297)
T ss_dssp ESSTTSCCEEEESSSS-CCSSCEEEEEECSSSCCEEEEETTSC-----EEEEEECTTSCEEEC-
T ss_pred eCCCCCccceeeeecc-cCCCcEEEEEECCCCCEEEEEcCCCc-----EEEEEECCCCcEEecc
Confidence 765 34554322100 111222233332 5667777775432 5555544 45787754
No 215
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=90.64 E-value=13 Score=36.24 Aligned_cols=189 Identities=13% Similarity=0.038 Sum_probs=92.8
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCc----EEEeeccCCCCCCcceeEEEEECCE-EEEEeecCCCCCccCeEEEEE
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETEC----WSVVEAKGDIPVARSGHTVVRASSV-LILFGGEDGKRRKLNDLHMFD 130 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~----W~~~~~~g~~P~~R~~~s~~~~~~~-IYv~GG~~~~~~~~~~v~~yD 130 (617)
++.+++.|+.+ ..+.+||..+.. ..... . ...........-++. +++.|+.++ .+.+||
T Consensus 22 ~~~~l~~~~~d------~~v~iw~~~~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~~l~~~~~dg------~i~~wd 85 (342)
T 1yfq_A 22 SKSLLLITSWD------GSLTVYKFDIQAKNVDLLQSL---R-YKHPLLCCNFIDNTDLQIYVGTVQG------EILKVD 85 (342)
T ss_dssp GGTEEEEEETT------SEEEEEEEETTTTEEEEEEEE---E-CSSCEEEEEEEESSSEEEEEEETTS------CEEEEC
T ss_pred CCCEEEEEcCC------CeEEEEEeCCCCccccceeee---e-cCCceEEEEECCCCCcEEEEEcCCC------eEEEEE
Confidence 45566666642 257777766655 32222 1 111111122223566 777777543 489999
Q ss_pred C-CCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCC---c----EEEeecCCCCCCCCcc
Q 007111 131 L-KSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM---I----WTRIKIRGFHPSPRAG 202 (617)
Q Consensus 131 ~-~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~---~----W~~~~~~g~~P~~R~~ 202 (617)
+ .+.....+. +. +....-.+++...+. +++.|+.++ .+..||+.+. . ...+... ..+..-
T Consensus 86 ~~~~~~~~~~~--~~-~~~~~v~~l~~~~~~-~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~v 153 (342)
T 1yfq_A 86 LIGSPSFQALT--NN-EANLGICRICKYGDD-KLIAASWDG-----LIEVIDPRNYGDGVIAVKNLNSNNT---KVKNKI 153 (342)
T ss_dssp SSSSSSEEECB--SC-CCCSCEEEEEEETTT-EEEEEETTS-----EEEEECHHHHTTBCEEEEESCSSSS---SSCCCE
T ss_pred eccCCceEecc--cc-CCCCceEEEEeCCCC-EEEEEcCCC-----eEEEEcccccccccccccCCeeeEE---eeCCce
Confidence 9 888776553 10 111112233333455 677777664 4888887540 0 1112111 122222
Q ss_pred eEEEEECCEEEEEecCCCCCccceEEEEECCC-Cc--EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCC
Q 007111 203 CCGVLCGTKWYIAGGGSRKKRHAETLIFDILK-GE--WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSN 279 (617)
Q Consensus 203 ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~-~~--W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~ 279 (617)
.+++..++. +++|+.. ..+.+||+.+ .. ...... + .......+.+... ++.+++.|+.++
T Consensus 154 ~~~~~~~~~-l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~-~-----~~~~i~~i~~~~~-~~~~l~~~~~dg---- 216 (342)
T 1yfq_A 154 FTMDTNSSR-LIVGMNN-----SQVQWFRLPLCEDDNGTIEES-G-----LKYQIRDVALLPK-EQEGYACSSIDG---- 216 (342)
T ss_dssp EEEEECSSE-EEEEEST-----TEEEEEESSCCTTCCCEEEEC-S-----CSSCEEEEEECSG-GGCEEEEEETTS----
T ss_pred EEEEecCCc-EEEEeCC-----CeEEEEECCccccccceeeec-C-----CCCceeEEEECCC-CCCEEEEEecCC----
Confidence 344444556 5555543 3588999877 33 222221 1 1112334444320 244677777643
Q ss_pred eEEEEECCCC
Q 007111 280 QVEVLSIEKN 289 (617)
Q Consensus 280 dV~vyd~~~~ 289 (617)
.|.+|+....
T Consensus 217 ~i~i~~~~~~ 226 (342)
T 1yfq_A 217 RVAVEFFDDQ 226 (342)
T ss_dssp EEEEEECCTT
T ss_pred cEEEEEEcCC
Confidence 5666666543
No 216
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=90.63 E-value=20 Score=38.21 Aligned_cols=183 Identities=8% Similarity=0.036 Sum_probs=89.7
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 135 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~ 135 (617)
+++.++.|+.+ ..+.+||........+.. ........+...++.+++.|+.+. .+.+||.....
T Consensus 355 ~g~~l~~~~~d------g~v~~~~~~~~~~~~~~~----~~~~v~~~~~s~dg~~l~~~~~d~------~v~~~~~~~~~ 418 (577)
T 2ymu_A 355 DGQTIASASDD------KTVKLWNRNGQLLQTLTG----HSSSVRGVAFSPDGQTIASASDDK------TVKLWNRNGQL 418 (577)
T ss_dssp TSSEEEEEETT------SEEEEEETTCCEEEEEEC----CSSCEEEEEECTTSSCEEEEETTS------EEEEECTTCCE
T ss_pred CCCEEEEEeCC------CEEEEEcCCCCEEEEecC----CCCCeEEEEECCCCCEEEEEeCCC------EEEEEeCCCCE
Confidence 45666666642 257778865554444431 111111111122456667776543 47788865443
Q ss_pred EEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEE
Q 007111 136 WLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWY 213 (617)
Q Consensus 136 W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~Iy 213 (617)
-..+. + ..... .+++.. +++ +++.|+.++ .+..||.....-..+... ...-.+++.. +++++
T Consensus 419 ~~~~~--~--~~~~v-~~~~~s~d~~-~l~~~~~d~-----~v~~w~~~~~~~~~~~~~-----~~~v~~~~~spd~~~l 482 (577)
T 2ymu_A 419 LQTLT--G--HSSSV-WGVAFSPDDQ-TIASASDDK-----TVKLWNRNGQLLQTLTGH-----SSSVRGVAFSPDGQTI 482 (577)
T ss_dssp EEEEE--C--CSSCE-EEEEECTTSS-EEEEEETTS-----EEEEEETTSCEEEEEECC-----SSCEEEEEECTTSCEE
T ss_pred EEEec--C--CCCCe-EEEEECCCCC-EEEEEcCCC-----EEEEEECCCCEEEEEcCC-----CCCEEEEEEcCCCCEE
Confidence 33332 1 11111 122233 455 667776653 488889765544443321 1112233333 66777
Q ss_pred EEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 214 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 214 I~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
+.|+.. ..+.+||.....-..+... ......+.+.. ++.+++.||.++ .|.+||...
T Consensus 483 as~~~d-----~~i~iw~~~~~~~~~~~~h-------~~~v~~l~~s~--dg~~l~s~~~dg----~v~lwd~~~ 539 (577)
T 2ymu_A 483 ASASDD-----KTVKLWNRNGQLLQTLTGH-------SSSVRGVAFSP--DGQTIASASDDK----TVKLWNRNG 539 (577)
T ss_dssp EEEETT-----SEEEEEETTSCEEEEEECC-------SSCEEEEEECT--TSSCEEEEETTS----EEEEECTTS
T ss_pred EEEeCC-----CEEEEEcCCCCEEEEEeCC-------CCCEEEEEEcC--CCCEEEEEECcC----EEEEEeCCC
Confidence 777654 2477888655443333211 11233344432 244666777653 578888643
No 217
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=90.36 E-value=18 Score=37.32 Aligned_cols=71 Identities=11% Similarity=0.044 Sum_probs=40.1
Q ss_pred CCEEEEEecCCC----CCccceEEEEECCCCcE-EEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEE
Q 007111 209 GTKWYIAGGGSR----KKRHAETLIFDILKGEW-SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEV 283 (617)
Q Consensus 209 ~~~IyI~GG~s~----~~~~~~v~~yDl~~~~W-~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~v 283 (617)
++++|+...... ....++++++|+.+.+- ..++. +...+++ .+..+++..+|+..+. .+.|.+
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-------g~~p~~i-~~s~Dg~~~l~v~~~~----~~~V~V 345 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-------GHDVDAI-SVAQDGGPDLYALSAG----TEVLHI 345 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-------CCCcCeE-EECCCCCeEEEEEcCC----CCeEEE
Confidence 578998754211 12346899999988765 33321 1112333 3333333356654422 258999
Q ss_pred EECCCCcc
Q 007111 284 LSIEKNES 291 (617)
Q Consensus 284 yd~~~~~W 291 (617)
+|..+.+-
T Consensus 346 iD~~t~~v 353 (373)
T 2mad_H 346 YDAGAGDQ 353 (373)
T ss_pred EECCCCCE
Confidence 99988763
No 218
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=90.29 E-value=20 Score=40.57 Aligned_cols=181 Identities=9% Similarity=0.040 Sum_probs=96.1
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeecc-C
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK-G 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~-g 92 (617)
+.+++||+.+.++..... . .+.. -.+++..++.|||... ..+++||+.++++...... .
T Consensus 82 ~Gl~~yd~~~~~f~~~~~----------~-~~~~-i~~i~~~~g~lWigt~--------~Gl~~~~~~~~~~~~~~~~~~ 141 (758)
T 3ott_A 82 NGILVYNYRADRYEQPET----------D-FPTD-VRTMALQGDTLWLGAL--------NGLYTYQLQSRKLTSFDTRRN 141 (758)
T ss_dssp TEEEEEETTTTEECCCSC----------C-CCSC-EEEEEEETTEEEEEET--------TEEEEEETTTCCEEEECHHHH
T ss_pred CCeEEEeCCCCEEECccc----------C-CCce-EEEEEecCCcEEEEcC--------CcceeEeCCCCeEEEeccCCC
Confidence 357889988887654111 1 1111 1234445788887522 1589999999988876311 1
Q ss_pred CCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCC-CCCcccEEEEEC-CcEEEEEccCC
Q 007111 93 DIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP-SPRSNHVAALYD-DKNLLIFGGSS 169 (617)
Q Consensus 93 ~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P-~~R~~h~a~~~~-~~~LyV~GG~~ 169 (617)
.+|... -.+++.. ++.||+. .. +-+++||+.+.++..+....... ....-.+++... +..|+| |- .
T Consensus 142 ~l~~~~-i~~i~~d~~g~lWig--t~------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWi-gt-~ 210 (758)
T 3ott_A 142 GLPNNT-IYSIIRTKDNQIYVG--TY------NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWI-GT-E 210 (758)
T ss_dssp CCSCSC-EEEEEECTTCCEEEE--ET------TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEE-EE-E
T ss_pred CcCCCe-EEEEEEcCCCCEEEE--eC------CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEE-EE-C
Confidence 223221 1223333 5688873 11 34889999998887663111100 011111222222 343565 22 1
Q ss_pred CCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEee
Q 007111 170 KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 241 (617)
Q Consensus 170 ~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~ 241 (617)
..+++||+.+.++...... +. ..-.+++.. ++.++|.-. .-+++||+.+..+....
T Consensus 211 -----~Gl~~~~~~~~~~~~~~~l---~~-~~i~~i~~d~~g~lWigT~-------~Gl~~~~~~~~~~~~~~ 267 (758)
T 3ott_A 211 -----GYLFQYFPSTGQIKQTEAF---HN-NSIKSLALDGNGDLLAGTD-------NGLYVYHNDTTPLQHII 267 (758)
T ss_dssp -----EEEEEEETTTTEEEEEEEE---EE-EEEEEEEECTTCCEEEEET-------TEEEEECCTTSCCEEEC
T ss_pred -----CCCeEEcCCCCeEEeccCC---CC-CeEEEEEEcCCCCEEEEeC-------CceeEEecCCCcEEEEE
Confidence 1389999999988766432 11 111233333 566776431 13788998887776653
No 219
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=89.61 E-value=8.9 Score=41.38 Aligned_cols=187 Identities=17% Similarity=0.197 Sum_probs=98.2
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 135 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~ 135 (617)
++++|+|-|. .+|+||..+++.....=. .+|. .. ++....+++|+|-| +..|+||+.+.+
T Consensus 158 ~~~~yfFkG~--------~yw~yd~~~~~~~~~~w~-gi~~--iD-AA~~~~g~~YfFkG--------~~y~rfd~~~~~ 217 (460)
T 1qhu_A 158 DEGILFFQGN--------RKWFWDLTTGTKKERSWP-AVGN--CT-SALRWLGRYYCFQG--------NQFLRFNPVSGE 217 (460)
T ss_dssp SSEEEEEETT--------EEEEEETTTTEEEEECCT-TSCC--CS-EEEEETTEEEEEET--------TEEEEECTTTCC
T ss_pred CCeEEEEecc--------cEEEEecccceeecccCC-CCCc--cc-hheeeCCceEEEEC--------CEEEEEcCccCc
Confidence 6788999874 589999998876532211 2332 33 44445689999965 346777765532
Q ss_pred ------------EEEeecCC------------CCC-----CCCcccEEEE-ECCcEEEEEccCCCCCCCCeEEEEECCCC
Q 007111 136 ------------WLPLHCTG------------TGP-----SPRSNHVAAL-YDDKNLLIFGGSSKSKTLNDLYSLDFETM 185 (617)
Q Consensus 136 ------------W~~l~~~g------------~~P-----~~R~~h~a~~-~~~~~LyV~GG~~~~~~~n~v~~yD~~t~ 185 (617)
|..++..| ..| ..... +++. .++. +|+|-|. ..|++|...+
T Consensus 218 v~~gyPk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~D-Ai~~~~~G~-tYFFKg~-------~yWR~~~~~~ 288 (460)
T 1qhu_A 218 VPPGYPLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLS-AMVSDNHGA-TYVFSGS-------HYWRLDTNRD 288 (460)
T ss_dssp CCTTCCEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCC-EEEECTTCC-EEEEETT-------EEEECTTGGG
T ss_pred ccCCCCcchhhcccCCCCCCCccccccCCccccccccccCCCCcC-EEEecCCCe-EEEEeCC-------EEEEEecCCC
Confidence 22211000 001 11122 3333 2455 8998774 3777776543
Q ss_pred cEEEeec---CCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCC------CCCCC--Ccce
Q 007111 186 IWTRIKI---RGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPS------SSVTS--NKGF 254 (617)
Q Consensus 186 ~W~~~~~---~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~------~~p~~--r~~~ 254 (617)
.+..... -+.+|.. --++...++++|+|=| +..|+|+.... .+.++..|. ..|.. ....
T Consensus 289 ~~~p~~Is~~WpglP~~--IDAAf~~~~~~yfFkG-------~~yw~f~~~~g-~~~~~GyPK~I~~~lGlp~~~~~~~I 358 (460)
T 1qhu_A 289 GWHSWPIAHQWPQGPST--VDAAFSWEDKLYLIQD-------TKVYVFLTKGG-YTLVNGYPKRLEKELGSPPVISLEAV 358 (460)
T ss_dssp CCCCEEGGGTCTTSCSS--CSEEEEETTEEEEEET-------TEEEEEECSBS-CEECTTCCEEHHHHHCCCSSCCCSCC
T ss_pred CcCccchhhhccCCCCC--CcEEEEECCeEEEEeC-------CEEEEEeCCCC-ceecCCCCeEHHHhccCCCccccCcc
Confidence 3322111 1223333 2345556899999977 45888986531 222211010 01111 1123
Q ss_pred EEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 255 TLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 255 s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
-++... ...+.+|+|-|. ..|.||...
T Consensus 359 DAA~~~-~~~~ktyfFkG~------~ywryd~~~ 385 (460)
T 1qhu_A 359 DAAFVC-PGSSRLHIMAGR------RLWWLDLKS 385 (460)
T ss_dssp CEEECC-TTCCEEEEEETT------EEEEEEGGG
T ss_pred cEEEEe-CCCCEEEEEECC------EEEEEECCC
Confidence 333332 235778888774 789999863
No 220
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=89.37 E-value=5.5 Score=39.53 Aligned_cols=111 Identities=9% Similarity=0.122 Sum_probs=53.6
Q ss_pred EEEEEeecCCCCCccCeEEEEECCC-CcEEEeecCCCCCCCCcccEEEEE--CC----cEEEEEccCCCCCCCCeEEEEE
Q 007111 109 VLILFGGEDGKRRKLNDLHMFDLKS-LTWLPLHCTGTGPSPRSNHVAALY--DD----KNLLIFGGSSKSKTLNDLYSLD 181 (617)
Q Consensus 109 ~IYv~GG~~~~~~~~~~v~~yD~~t-~~W~~l~~~g~~P~~R~~h~a~~~--~~----~~LyV~GG~~~~~~~n~v~~yD 181 (617)
.+++.||.++ .+.+||..+ ..|..+. .+..-...-.++.+ ++ . +++.|+.++ .|.+||
T Consensus 180 ~~l~sgs~D~------~v~lWd~~~~~~~~~~~---~l~~h~~~V~~v~~sp~~~~~~~-~las~s~D~-----~v~iw~ 244 (316)
T 3bg1_A 180 KRFASGGCDN------LIKLWKEEEDGQWKEEQ---KLEAHSDWVRDVAWAPSIGLPTS-TIASCSQDG-----RVFIWT 244 (316)
T ss_dssp CBEECCBTTS------BCCEEEECTTSCEEEEE---CCBCCSSCEEEEECCCCSSCSCC-EEEEEETTC-----EEEEEE
T ss_pred ceEEEecCCC------eEEEEEeCCCCccceee---ecccCCCceEEEEecCCCCCCCc-eEEEEcCCC-----eEEEEE
Confidence 4566666543 355666653 4576653 22111111122222 21 4 677777764 488888
Q ss_pred CCC---CcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECC-CCcEEEeec
Q 007111 182 FET---MIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL-KGEWSVAIT 242 (617)
Q Consensus 182 ~~t---~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~-~~~W~~l~~ 242 (617)
+.+ ..|...... .....-.+++.. ++.+++.||..+. +.+|+.. ...|..+..
T Consensus 245 ~~~~~~~~~~~~~~~---~~~~~v~~v~~sp~g~~las~~~D~~-----v~lw~~~~~g~~~~~~~ 302 (316)
T 3bg1_A 245 CDDASSNTWSPKLLH---KFNDVVWHVSWSITANILAVSGGDNK-----VTLWKESVDGQWVCISD 302 (316)
T ss_dssp CSSTTCCCCBCCEEE---ECSSCEEEEEECTTTCCEEEEESSSC-----EEEEEECTTSCEEEEEE
T ss_pred ccCccccchhhhhhh---cCCCcEEEEEEcCCCCEEEEEcCCCe-----EEEEEECCCCcEEEeee
Confidence 765 333211110 001112233332 5667777775533 5566654 457887654
No 221
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=89.18 E-value=32 Score=38.51 Aligned_cols=114 Identities=12% Similarity=0.108 Sum_probs=61.5
Q ss_pred ceEEEEECCCCc--EEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEee
Q 007111 14 DDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVE 89 (617)
Q Consensus 14 ~~v~~yd~~t~~--W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~ 89 (617)
..++++|..+.+ |+.-......... .........+.+..+++||+.... ..++.+|..+.+ |+...
T Consensus 76 ~~v~AlD~~tG~~~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~v~~~d-------g~l~alD~~tG~~~W~~~~ 145 (668)
T 1kv9_A 76 SRVIAVDAASGKELWRYDPEVAKVKAR---TSCCDAVNRGVALWGDKVYVGTLD-------GRLIALDAKTGKAIWSQQT 145 (668)
T ss_dssp GEEEEEETTTCCEEEEECCCCCGGGGG---GCTTCSCCCCCEEEBTEEEEECTT-------SEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCChhceEECCCCCccccc---cccccCCccceEEECCEEEEEcCC-------CEEEEEECCCCCEeeeecc
Confidence 469999987665 9865431000000 000000012345568888876421 369999998875 87654
Q ss_pred ccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEe
Q 007111 90 AKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPL 139 (617)
Q Consensus 90 ~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l 139 (617)
.. .........+-++.++.+|+-.+.... .....++.||+.+.+ |+.-
T Consensus 146 ~~-~~~~~~~~~~P~v~~~~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 146 TD-PAKPYSITGAPRVVKGKVIIGNGGAEY-GVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp SC-TTSSCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEEE
T ss_pred CC-CCCcceecCCCEEECCEEEEeCCCCCc-CCCCEEEEEECCCCcEEEEec
Confidence 21 001112222334568888774332211 134679999999876 8864
No 222
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=89.11 E-value=22 Score=36.44 Aligned_cols=153 Identities=12% Similarity=0.087 Sum_probs=80.8
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
++.+++.|+.+ ..+.+||+.+..-...- ..+.......++.+ ++.+++.|+.++ .+.+||+.+
T Consensus 181 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~~l~s~~~dg------~i~iwd~~~ 245 (437)
T 3gre_A 181 EKSLLVALTNL------SRVIIFDIRTLERLQII---ENSPRHGAVSSICIDEECCVLILGTTRG------IIDIWDIRF 245 (437)
T ss_dssp SCEEEEEEETT------SEEEEEETTTCCEEEEE---ECCGGGCCEEEEEECTTSCEEEEEETTS------CEEEEETTT
T ss_pred CCCEEEEEeCC------CeEEEEeCCCCeeeEEE---ccCCCCCceEEEEECCCCCEEEEEcCCC------eEEEEEcCC
Confidence 46777777753 36899999887643222 11111122223333 567777777654 488999988
Q ss_pred CcEEEeecCCCCCCCCcccEEEEE----CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCC--C------CC---
Q 007111 134 LTWLPLHCTGTGPSPRSNHVAALY----DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGF--H------PS--- 198 (617)
Q Consensus 134 ~~W~~l~~~g~~P~~R~~h~a~~~----~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~--~------P~--- 198 (617)
.+....- ..+....-.+++.. .+..+++.|+.++ .|.+||+.++.....-.... + |.
T Consensus 246 ~~~~~~~---~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (437)
T 3gre_A 246 NVLIRSW---SFGDHAPITHVEVCQFYGKNSVIVVGGSSKT-----FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKG 317 (437)
T ss_dssp TEEEEEE---BCTTCEEEEEEEECTTTCTTEEEEEEESTTE-----EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSS
T ss_pred ccEEEEE---ecCCCCceEEEEeccccCCCccEEEEEcCCC-----cEEEEEcCCCcEEEEEEcCCCCCccceecccccc
Confidence 7654321 11111111111111 2333566666553 48999998776543322100 0 10
Q ss_pred -----------CCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCc
Q 007111 199 -----------PRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 199 -----------~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
...-.+++..++.+++.||..+ .+.+||+.+..
T Consensus 318 l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~-----~i~~wd~~~~~ 361 (437)
T 3gre_A 318 LEELNFCGIRSLNALSTISVSNDKILLTDEATS-----SIVMFSLNELS 361 (437)
T ss_dssp GGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGT-----EEEEEETTCGG
T ss_pred cccceecccccCCceEEEEECCceEEEecCCCC-----eEEEEECCCcc
Confidence 0111233444778888888653 48888887654
No 223
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=88.88 E-value=3 Score=38.58 Aligned_cols=100 Identities=28% Similarity=0.265 Sum_probs=62.2
Q ss_pred hchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHH
Q 007111 482 NGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAF 561 (617)
Q Consensus 482 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~ 561 (617)
...|+-||+++-..+-+=-..-.-.=|+-.++-+.++....-.-.|.+|++.++-+.. -||.|++-
T Consensus 8 i~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~--------------~Leke~~~ 73 (168)
T 3o0z_A 8 LSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKS--------------QTDKDYYQ 73 (168)
T ss_dssp --CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH
Confidence 4567777777655442221111222355556666677766677789999999986543 37888888
Q ss_pred HHHHHHH----------HHHhhhhhccchhhhccccccchhhHHHHHHHHhhhh
Q 007111 562 LKAVLDD----------TQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLE 605 (617)
Q Consensus 562 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (617)
|-|-|+. +.+||.. |--.|+-|+.++|.++..++
T Consensus 74 LQa~L~qEr~~r~q~se~~~elq~----------ri~~L~~El~~~k~~~~k~~ 117 (168)
T 3o0z_A 74 LQAILEAERRDRGHDSEMIGDLQA----------RITSLQEEVKHLKHNLEKVE 117 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 8887763 3344443 44556677888887777655
No 224
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=88.53 E-value=20 Score=35.84 Aligned_cols=145 Identities=10% Similarity=-0.009 Sum_probs=77.3
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 135 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~ 135 (617)
++.+|+++... ..+++||+.++...... .+. .....+..-++.+|+... ..+++||+.+.+
T Consensus 60 ~~~l~~~d~~~------~~i~~~d~~~~~~~~~~----~~~-~v~~i~~~~dg~l~v~~~--------~gl~~~d~~~g~ 120 (326)
T 2ghs_A 60 SGTAWWFNILE------RELHELHLASGRKTVHA----LPF-MGSALAKISDSKQLIASD--------DGLFLRDTATGV 120 (326)
T ss_dssp TTEEEEEEGGG------TEEEEEETTTTEEEEEE----CSS-CEEEEEEEETTEEEEEET--------TEEEEEETTTCC
T ss_pred CCEEEEEECCC------CEEEEEECCCCcEEEEE----CCC-cceEEEEeCCCeEEEEEC--------CCEEEEECCCCc
Confidence 36788886431 36999999988766554 122 122222234678777531 349999999998
Q ss_pred EEEeecCC-CCCCCCcccEEEEE-CCcEEEEEcc-CCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CC-
Q 007111 136 WLPLHCTG-TGPSPRSNHVAALY-DDKNLLIFGG-SSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT- 210 (617)
Q Consensus 136 W~~l~~~g-~~P~~R~~h~a~~~-~~~~LyV~GG-~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~- 210 (617)
+..+.... ..+..+.. .+++. +++ +|+... .........+++|| +++...+... ... ...++.. ++
T Consensus 121 ~~~~~~~~~~~~~~~~~-~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~----~~~-~~~i~~s~dg~ 191 (326)
T 2ghs_A 121 LTLHAELESDLPGNRSN-DGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD----ISI-PNSICFSPDGT 191 (326)
T ss_dssp EEEEECSSTTCTTEEEE-EEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE----ESS-EEEEEECTTSC
T ss_pred EEEEeeCCCCCCCCCCC-CEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC----Ccc-cCCeEEcCCCC
Confidence 88764211 11111111 22222 345 666331 11112345799999 5666654321 011 1233333 33
Q ss_pred EEEEEecCCCCCccceEEEEECC
Q 007111 211 KWYIAGGGSRKKRHAETLIFDIL 233 (617)
Q Consensus 211 ~IyI~GG~s~~~~~~~v~~yDl~ 233 (617)
.+|+..... ..+++||+.
T Consensus 192 ~lyv~~~~~-----~~I~~~d~~ 209 (326)
T 2ghs_A 192 TGYFVDTKV-----NRLMRVPLD 209 (326)
T ss_dssp EEEEEETTT-----CEEEEEEBC
T ss_pred EEEEEECCC-----CEEEEEEcc
Confidence 677775322 468999975
No 225
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=88.45 E-value=11 Score=40.87 Aligned_cols=111 Identities=18% Similarity=0.065 Sum_probs=61.4
Q ss_pred ECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCC
Q 007111 55 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL 134 (617)
Q Consensus 55 ~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~ 134 (617)
.++.++++.+..+ .+.+||+.+.....+.. .+. ... ...-+++.+++++.+..+ ...++++|+.+.
T Consensus 120 dg~~~~~~s~~~~------~~~l~d~~~g~~~~l~~---~~~--~~~-~~spDG~~la~~~~~~~~--~~~i~~~d~~~g 185 (582)
T 3o4h_A 120 TGEAVVFTGATED------RVALYALDGGGLRELAR---LPG--FGF-VSDIRGDLIAGLGFFGGG--RVSLFTSNLSSG 185 (582)
T ss_dssp CSSCEEEEEECSS------CEEEEEEETTEEEEEEE---ESS--CEE-EEEEETTEEEEEEEEETT--EEEEEEEETTTC
T ss_pred CCCeEEEEecCCC------CceEEEccCCcEEEeec---CCC--ceE-EECCCCCEEEEEEEcCCC--CeEEEEEcCCCC
Confidence 3455655554321 23477888887766652 122 222 223355555555544322 245999999999
Q ss_pred cEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEE
Q 007111 135 TWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWT 188 (617)
Q Consensus 135 ~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~ 188 (617)
.++.+. ..+ .. ....+.. +++.|+ .+..++ ...|+++|+.++...
T Consensus 186 ~~~~l~---~~~-~~-~~~~~~SpDG~~l~-~~~~~~---~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 186 GLRVFD---SGE-GS-FSSASISPGMKVTA-GLETAR---EARLVTVDPRDGSVE 231 (582)
T ss_dssp CCEEEC---CSS-CE-EEEEEECTTSCEEE-EEECSS---CEEEEEECTTTCCEE
T ss_pred CceEee---cCC-Cc-cccceECCCCCEEE-EccCCC---eeEEEEEcCCCCcEE
Confidence 988773 111 11 1222232 566455 433332 246999999998887
No 226
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=88.16 E-value=16 Score=34.43 Aligned_cols=153 Identities=12% Similarity=0.112 Sum_probs=83.7
Q ss_pred eEEEEECCEEEEEcccCCCCCCceEEEEEECCC--CcEEEeecc---CCCCCCcceeEEEE-ECCEEEEEeecCCCCCcc
Q 007111 50 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTET--ECWSVVEAK---GDIPVARSGHTVVR-ASSVLILFGGEDGKRRKL 123 (617)
Q Consensus 50 hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t--~~W~~~~~~---g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~ 123 (617)
-+++..++++|+|=|. .+|+++... ......... ..+|. ...++... .++++|+|-|
T Consensus 10 DAi~~~~g~~yfFkg~--------~~Wr~~~~~~~~~~~p~~Is~~w~glP~-~IDAa~~~~~~~~~yfFkG-------- 72 (195)
T 1itv_A 10 DAIAEIGNQLYLFKDG--------KYWRFSEGRGSRPQGPFLIADKWPALPR-KLDSVFEEPLSKKLFFFSG-------- 72 (195)
T ss_dssp SEEEEETTEEEEEETT--------EEEEECCSSSCCCEEEEEHHHHCTTSCS-SCSEEEECTTTCCEEEEET--------
T ss_pred CEEEEeCCEEEEEECC--------EEEEEECCccccCCCcEEhhhccCCCCC-CccEEEEECCCCeEEEEeC--------
Confidence 3566679999999764 589998765 333333222 13443 23333322 2578999865
Q ss_pred CeEEEEECCCCcE-EEeecCCCCCCC--CcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEE-----ee-cCC
Q 007111 124 NDLHMFDLKSLTW-LPLHCTGTGPSP--RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-----IK-IRG 194 (617)
Q Consensus 124 ~~v~~yD~~t~~W-~~l~~~g~~P~~--R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~-----~~-~~g 194 (617)
+..|+|+..+..- +.+..- .+|.. ....+.. ..+..+|+|-|. ..|+||..+.+-.. +. .-+
T Consensus 73 ~~yw~~~~~~~~~Pk~i~~~-G~p~~~~~iDAA~~-~~~g~~yfFkg~-------~ywr~d~~~~~~~~gyPr~i~~~w~ 143 (195)
T 1itv_A 73 RQVWVYTGASVLGPRRLDKL-GLGADVAQVTGALR-SGRGKMLLFSGR-------RLWRFDVKAQMVDPRSASEVDRMFP 143 (195)
T ss_dssp TEEEEEETTEEEEEEEGGGG-TCCTTCCCCCEEEE-CSTTEEEEEETT-------EEEEEETTTTEECGGGCEEHHHHST
T ss_pred CEEEEEcCCccCCCEEeeec-ccCCCccceeEEEE-cCCCeEEEEeCC-------EEEEEeCCcccccCCCccChhhcCC
Confidence 4578887543111 112111 23332 2332333 333348999773 58999987654221 11 111
Q ss_pred CCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcE
Q 007111 195 FHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEW 237 (617)
Q Consensus 195 ~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W 237 (617)
-.| ..-.++...++.+|++-| +..|+||..+..-
T Consensus 144 Gvp--~~idaa~~~~g~~Yffkg-------~~y~~~~~~~~~v 177 (195)
T 1itv_A 144 GVP--LDTHDVFQFREKAYFCQD-------RFYWRVSSRSELN 177 (195)
T ss_dssp TSC--SSCSEEEEETTEEEEEET-------TEEEEEECCTTCC
T ss_pred CCC--CCCCEEEEeCCeEEEEeC-------CEEEEEECCccEE
Confidence 112 223455556899999987 3588999876653
No 227
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=88.10 E-value=19 Score=35.20 Aligned_cols=106 Identities=11% Similarity=0.056 Sum_probs=58.3
Q ss_pred CEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE--CCcEEEEEccCCCCCCCCeEEEEECCCC
Q 007111 108 SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETM 185 (617)
Q Consensus 108 ~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~--~~~~LyV~GG~~~~~~~n~v~~yD~~t~ 185 (617)
+.+++.|+.++ .+.+||+.+.+-...-. + ....-.+++.. ++. +++.|+.++. |..||+.++
T Consensus 85 ~~~l~~~~~dg------~i~v~d~~~~~~~~~~~-~---~~~~i~~~~~~~~~~~-~l~s~~~dg~-----i~iwd~~~~ 148 (366)
T 3k26_A 85 HPLLAVAGSRG------IIRIINPITMQCIKHYV-G---HGNAINELKFHPRDPN-LLLSVSKDHA-----LRLWNIQTD 148 (366)
T ss_dssp CEEEEEEETTC------EEEEECTTTCCEEEEEE-S---CCSCEEEEEECSSCTT-EEEEEETTSC-----EEEEETTTT
T ss_pred CCEEEEecCCC------EEEEEEchhceEeeeec-C---CCCcEEEEEECCCCCC-EEEEEeCCCe-----EEEEEeecC
Confidence 56788887644 58899988765432210 1 11111122333 345 7788887643 999999887
Q ss_pred cEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCC
Q 007111 186 IWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKG 235 (617)
Q Consensus 186 ~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~ 235 (617)
........ .......-.+++.. ++..++.|+..+ .+.+||+.+.
T Consensus 149 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~ 193 (366)
T 3k26_A 149 TLVAIFGG-VEGHRDEVLSADYDLLGEKIMSCGMDH-----SLKLWRINSK 193 (366)
T ss_dssp EEEEEECS-TTSCSSCEEEEEECTTSSEEEEEETTS-----CEEEEESCSH
T ss_pred eEEEEecc-cccccCceeEEEECCCCCEEEEecCCC-----CEEEEECCCC
Confidence 65544311 00111222233333 456667776543 4888888764
No 228
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=88.07 E-value=38 Score=37.89 Aligned_cols=149 Identities=14% Similarity=0.056 Sum_probs=82.4
Q ss_pred eEEEEEECCCC--cEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCC---cEEEeecCCCCCC
Q 007111 73 VSVWTFDTETE--CWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL---TWLPLHCTGTGPS 147 (617)
Q Consensus 73 ~~v~~yd~~t~--~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~---~W~~l~~~g~~P~ 147 (617)
+.+|.+|..+. .|..+.. +...........++.||+....+.. ...++.+|+.+. .|+.+.+. -.
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~----~~~~~~~~~~~~g~~l~~~t~~~~~---~~~l~~~d~~~~~~~~~~~l~~~--~~- 328 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQG----DLDADVSLVDNKGSTLYLLTNRDAP---NRRLVTVDAANPGPAHWRDLIPE--RQ- 328 (693)
T ss_dssp CEEEEEETTSTTCCCEEEEC----SSSSCEEEEEEETTEEEEEECTTCT---TCEEEEEETTSCCGGGCEEEECC--CS-
T ss_pred cEEEEEECCCCCCceEEEeC----CCCceEEEEeccCCEEEEEECCCCC---CCEEEEEeCCCCCccccEEEecC--CC-
Confidence 58999998766 6877752 2222222244568899998776432 467999999874 48877421 11
Q ss_pred CCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE--ECCEEEEE-ecCCCCCcc
Q 007111 148 PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL--CGTKWYIA-GGGSRKKRH 224 (617)
Q Consensus 148 ~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~--~~~~IyI~-GG~s~~~~~ 224 (617)
. . . .+..++..|++..-.++ ...++++|+.+.....+.. |.......... .++.+++. .+.. .-
T Consensus 329 ~-~-~-~~s~~g~~lv~~~~~~g---~~~l~~~d~~g~~~~~l~~----p~~~~~~~~~~~~d~~~l~~~~ss~~---tP 395 (693)
T 3iuj_A 329 Q-V-L-TVHSGSGYLFAEYMVDA---TARVEQFDYEGKRVREVAL----PGLGSVSGFNGKHDDPALYFGFENYA---QP 395 (693)
T ss_dssp S-C-E-EEEEETTEEEEEEEETT---EEEEEEECTTSCEEEEECC----SSSSEEEECCCCTTCSCEEEEEECSS---SC
T ss_pred C-E-E-EEEEECCEEEEEEEECC---eeEEEEEECCCCeeEEeec----CCCceEEeeecCCCCCEEEEEecCCC---CC
Confidence 1 1 1 33334443554433222 2468999998665554432 22111111111 12334433 2222 22
Q ss_pred ceEEEEECCCCcEEEeecCC
Q 007111 225 AETLIFDILKGEWSVAITSP 244 (617)
Q Consensus 225 ~~v~~yDl~~~~W~~l~~~~ 244 (617)
..++.||+.+..++.+...+
T Consensus 396 ~~l~~~d~~~g~~~~l~~~~ 415 (693)
T 3iuj_A 396 PTLYRFEPKSGAISLYRASA 415 (693)
T ss_dssp CEEEEECTTTCCEEEEECCC
T ss_pred CEEEEEECCCCeEEEEEeCC
Confidence 56999999988888876433
No 229
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=87.98 E-value=4.2 Score=40.25 Aligned_cols=70 Identities=13% Similarity=0.176 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhH
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ 538 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~q 538 (617)
|..++++..+-.+-+.|-.+|++....+..++..+..+-.....+++.+.....+++.+++++...+..+
T Consensus 14 Q~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666667777777777777776666666666677777766667777777666655443
No 230
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=87.17 E-value=16 Score=38.57 Aligned_cols=130 Identities=15% Similarity=0.291 Sum_probs=79.0
Q ss_pred ceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcc--eeEEEEECCEEEEEeecCCCC------
Q 007111 49 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARS--GHTVVRASSVLILFGGEDGKR------ 120 (617)
Q Consensus 49 ~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~--~~s~~~~~~~IYv~GG~~~~~------ 120 (617)
-.|+-.+++.+|+.--...+...-+.+.+.+.....|..+. +|.... ..-.+.+++.||+||-....+
T Consensus 341 EPCvkyYdgvLyLtTRgt~~~~~GS~L~rs~d~Gq~w~slr----fp~nvHhtnlPFakvgD~l~mFgsERA~nEWE~G~ 416 (670)
T 3ju4_A 341 EPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLR----FPHNVHHTTLPFAKVGDDLIMFGSERAENEWEAGA 416 (670)
T ss_dssp EEEEEEETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEE----CTTCCCSSCCCEEEETTEEEEEEECSSTTCSSTTC
T ss_pred cchhhhhCCEEEEEecCcCCCCCcceeeeecccCCchhhee----ccccccccCCCcceeCCEEEEEeccccccccccCC
Confidence 45666789999999633333344467888898899999986 343222 222556799999999753211
Q ss_pred ---Cc---cCeEEE--EEC-----CCCcEEEee---cCCCCCCCCcccEEEEECCcE-EEEEccCCC-------------
Q 007111 121 ---RK---LNDLHM--FDL-----KSLTWLPLH---CTGTGPSPRSNHVAALYDDKN-LLIFGGSSK------------- 170 (617)
Q Consensus 121 ---~~---~~~v~~--yD~-----~t~~W~~l~---~~g~~P~~R~~h~a~~~~~~~-LyV~GG~~~------------- 170 (617)
++ ....++ .++ +.-+|..+. ..|..--.-.+-.++++++.. .|||||.+.
T Consensus 417 pD~RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgEd~~np~s~gdN~~k~ 496 (670)
T 3ju4_A 417 PDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGDNSAKD 496 (670)
T ss_dssp CCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEBCSCCCCTTTTTTTCC
T ss_pred CcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCcccCCccccccccccC
Confidence 11 112222 222 233576663 225555555666777777774 489999631
Q ss_pred ----CCCCCeEEEEEC
Q 007111 171 ----SKTLNDLYSLDF 182 (617)
Q Consensus 171 ----~~~~n~v~~yD~ 182 (617)
.....++|+|.+
T Consensus 497 ~~~~~Ghp~dlY~~ri 512 (670)
T 3ju4_A 497 PFKSDGHPSDLYCYKM 512 (670)
T ss_dssp TTSTTCCCCEEEEEEE
T ss_pred ccccCCCCcceEEEEE
Confidence 124567888865
No 231
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=87.02 E-value=30 Score=35.55 Aligned_cols=197 Identities=10% Similarity=0.056 Sum_probs=100.8
Q ss_pred EEEEEECCC--CcEEEeeccCCCCCCcceeEEEEE---CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCC
Q 007111 74 SVWTFDTET--ECWSVVEAKGDIPVARSGHTVVRA---SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSP 148 (617)
Q Consensus 74 ~v~~yd~~t--~~W~~~~~~g~~P~~R~~~s~~~~---~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~ 148 (617)
.++.|+... .+|..... .+....-++++.. .+.||+.+..... -.-+++.+-...+|+.+.....++..
T Consensus 32 Gl~~~~~~~~g~~W~~~~~---~~~~~~v~~i~~dp~~~~~l~~g~~~g~~---g~gl~~s~D~G~tW~~~~~~~~~~~~ 105 (394)
T 3b7f_A 32 GAWFLASDPARRTWELRGP---VFLGHTIHHIVQDPREPERMLMAARTGHL---GPTVFRSDDGGGNWTEATRPPAFNKA 105 (394)
T ss_dssp EEEEEEECTTSCSEEEEEE---ESTTSEEEEEEECSSSTTCEEEEEEC--C---CEEEEEESSTTSCCEECSBCCCCCCC
T ss_pred ceEEEECCCCCCCceECCc---cCCCCceEEEEECCCCCCeEEEEecCCCC---CccEEEeCCCCCCceECCccccCCCc
Confidence 377777655 78998741 1222233444443 4578876543211 12577777677889988521112211
Q ss_pred --C-----cccE-EEEEC----CcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCC--------------CCCcc
Q 007111 149 --R-----SNHV-AALYD----DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHP--------------SPRAG 202 (617)
Q Consensus 149 --R-----~~h~-a~~~~----~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P--------------~~R~~ 202 (617)
+ ..+. +..++ ...+|+.+. . ..|++.+-...+|+.+......| .....
T Consensus 106 ~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~-~-----ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 106 PEGETGRVVDHVFWLTPGHASEPGTWYAGTS-P-----QGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp C----CCCCCEEEEEEECCTTSTTCEEEEEE-T-----TEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred ccccccccccceeEEEeCCCCCCCEEEEEec-C-----CcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCce
Confidence 1 1111 22232 343666542 1 24888887888999885421111 11223
Q ss_pred eEEEEE---CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCC--CCCCC----cceEEEEEeecCCcEEEEEcCC
Q 007111 203 CCGVLC---GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS--SVTSN----KGFTLVLVQHKEKDFLVAFGGI 273 (617)
Q Consensus 203 ha~v~~---~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~--~p~~r----~~~s~v~v~~~~~~~L~I~GG~ 273 (617)
++++.. .+.||+..+. .-+++.+-...+|+.+...... .|... .....+.+...+.+.||+..+
T Consensus 180 ~~i~~d~~~~~~l~vg~~~------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~- 252 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSS------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH- 252 (394)
T ss_dssp EEEEECTTCTTCEEEEEET------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET-
T ss_pred eEEEECCCCCCEEEEEECC------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC-
Confidence 344443 2567776432 2377777777899987531110 11111 112333443333366666332
Q ss_pred CCCCCCeEEEEECCCCccccc
Q 007111 274 KKEPSNQVEVLSIEKNESSMG 294 (617)
Q Consensus 274 ~~~~~~dV~vyd~~~~~W~~~ 294 (617)
..|++++-....|...
T Consensus 253 -----~gl~~s~D~G~tW~~~ 268 (394)
T 3b7f_A 253 -----CGIYRMDRREGVWKRI 268 (394)
T ss_dssp -----TEEEEEETTTTEEECG
T ss_pred -----CeEEEeCCCCCcceEC
Confidence 2588888777788554
No 232
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=86.92 E-value=35 Score=37.84 Aligned_cols=111 Identities=18% Similarity=0.224 Sum_probs=58.5
Q ss_pred ceEEEEEC-CCCc--EEEccccccCCCCCCCCCCCcc--cceEEEE--ECCE----EEEEcccCCCCCCceEEEEEECCC
Q 007111 14 DDVQVLNF-DRFS--WTAASSKLYLSPSSLPLKIPAC--RGHSLIS--WGKK----VLLVGGKTDSGSDRVSVWTFDTET 82 (617)
Q Consensus 14 ~~v~~yd~-~t~~--W~~l~~~~~~~p~~~~~~~p~r--~~hs~v~--~g~~----lyV~GG~~~~~~~~~~v~~yd~~t 82 (617)
..++++|. .+.+ |+.-....... .+.+.+ ...+.+. .+++ ||+.... ..++.+|..+
T Consensus 73 ~~v~AlD~~~tG~~lW~~~~~~~~~~-----~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~d-------g~l~AlDa~T 140 (599)
T 1w6s_A 73 NNTFALGLDDPGTILWQDKPKQNPAA-----RAVACCDLVNRGLAYWPGDGKTPALILKTQLD-------GNVAALNAET 140 (599)
T ss_dssp TCEEEEETTCTTSEEEEECCCCCGGG-----GGGCSSCSCCCCCEEECCCSSSCCEEEEECTT-------SEEEEEETTT
T ss_pred CEEEEEeCCCCCcEEEEECCCCCccc-----cccccccccccceEEEecCCcceeEEEEEcCC-------CEEEEEECCC
Confidence 46999999 6665 97654311000 000000 0112334 4666 8775321 3699999988
Q ss_pred Cc--EEEeeccCCCCC-CcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEe
Q 007111 83 EC--WSVVEAKGDIPV-ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPL 139 (617)
Q Consensus 83 ~~--W~~~~~~g~~P~-~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l 139 (617)
.+ |+.-.. .... .....+-++.++.||+-++.... .....++.||+.+.+ |+.-
T Consensus 141 G~~~W~~~~~--~~~~~~~~~ssP~v~~g~V~vg~~g~e~-g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 141 GETVWKVENS--DIKVGSTLTIAPYVVKDKVIIGSSGAEL-GVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp CCEEEEEECC--CGGGTCBCCSCCEEETTEEEECCBCGGG-TCCCEEEEEETTTCCEEEEEE
T ss_pred CCEEEeecCC--CCCccceeecCCEEECCEEEEEeccccc-CCCCeEEEEECCCCcEEEEEc
Confidence 75 876431 1000 01112234468888764432111 124679999999875 8865
No 233
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=86.43 E-value=2.1 Score=56.56 Aligned_cols=83 Identities=13% Similarity=0.166 Sum_probs=42.5
Q ss_pred HHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhc-ccccccCCCcchhhhHHHHHHHHHHHHHhhhhh
Q 007111 498 AAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS-LSNIVHSDNVRLEHDVAFLKAVLDDTQKELHST 576 (617)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (617)
+|++-|..+.++.+++|++.+.+.++.+.+.++.+.++.-++++.. |....=+ .-++.+++.+.+-|+.++++|...
T Consensus 1956 ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa--~Pkr~~l~~ae~~l~~~~~~L~~~ 2033 (3245)
T 3vkg_A 1956 QANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPT--GPLREEVEQLENAANELKLKQDEI 2033 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666665555555554444444333333322 2222111 344566667777777777776666
Q ss_pred ccchhh
Q 007111 577 RGVLAG 582 (617)
Q Consensus 577 ~~~~~~ 582 (617)
+.-|+.
T Consensus 2034 ~~~L~~ 2039 (3245)
T 3vkg_A 2034 VATITA 2039 (3245)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665553
No 234
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=86.39 E-value=43 Score=36.81 Aligned_cols=225 Identities=12% Similarity=0.120 Sum_probs=111.7
Q ss_pred ceEEEEECCCCcEEE-ccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEcccCCCCCCceEEEEEECC--CCcEEEe
Q 007111 14 DDVQVLNFDRFSWTA-ASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTE--TECWSVV 88 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~-l~~~~~~~p~~~~~~~p~r~~hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~~--t~~W~~~ 88 (617)
+.+.++|+.+.+-.. +.. ... -|.++.. +.++|+.+. ...+.+||+. +.+ .+
T Consensus 177 ~~V~viD~~t~~v~~~i~~-------------g~~-p~~v~~SpDGr~lyv~~~-------dg~V~viD~~~~t~~--~v 233 (567)
T 1qks_A 177 GQIALIDGSTYEIKTVLDT-------------GYA-VHISRLSASGRYLFVIGR-------DGKVNMIDLWMKEPT--TV 233 (567)
T ss_dssp TEEEEEETTTCCEEEEEEC-------------SSC-EEEEEECTTSCEEEEEET-------TSEEEEEETTSSSCC--EE
T ss_pred CeEEEEECCCCeEEEEEeC-------------CCC-ccceEECCCCCEEEEEcC-------CCeEEEEECCCCCCc--Ee
Confidence 578999998876432 222 111 2444433 457787642 1369999995 443 22
Q ss_pred eccCCCCCCcceeEEEEE-----CC-EEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCC--------CCCCcccEE
Q 007111 89 EAKGDIPVARSGHTVVRA-----SS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTG--------PSPRSNHVA 154 (617)
Q Consensus 89 ~~~g~~P~~R~~~s~~~~-----~~-~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~--------P~~R~~h~a 154 (617)
. .++.......++.- ++ ++|+.. . ..+.+.+||..+.+=.+.-..+.+ |.+|.....
T Consensus 234 ~---~i~~G~~P~~ia~s~~~~pDGk~l~v~n-~-----~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~ 304 (567)
T 1qks_A 234 A---EIKIGSEARSIETSKMEGWEDKYAIAGA-Y-----WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL 304 (567)
T ss_dssp E---EEECCSEEEEEEECCSTTCTTTEEEEEE-E-----ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEE
T ss_pred E---EEecCCCCceeEEccccCCCCCEEEEEE-c-----cCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEE
Confidence 2 12222222233333 44 666653 2 235688999887664332111111 233433322
Q ss_pred EEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CC-EEEEEecCCCCCccceEEEEEC
Q 007111 155 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT-KWYIAGGGSRKKRHAETLIFDI 232 (617)
Q Consensus 155 ~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~-~IyI~GG~s~~~~~~~v~~yDl 232 (617)
...++..+++.=. ..+.++.+|..+.....+... +.++.-|.+... ++ .+|+.... .+.+.++|.
T Consensus 305 ~s~~~~~~vv~~~-----~~g~v~~vd~~~~~~~~v~~i---~~~~~~~d~~~~pdgr~~~va~~~-----sn~V~ViD~ 371 (567)
T 1qks_A 305 ASHYRPEFIVNVK-----ETGKILLVDYTDLNNLKTTEI---SAERFLHDGGLDGSHRYFITAANA-----RNKLVVIDT 371 (567)
T ss_dssp ECSSSSEEEEEET-----TTTEEEEEETTCSSEEEEEEE---ECCSSEEEEEECTTSCEEEEEEGG-----GTEEEEEET
T ss_pred EcCCCCEEEEEec-----CCCeEEEEecCCCccceeeee---eccccccCceECCCCCEEEEEeCC-----CCeEEEEEC
Confidence 2233342333211 124689999877665544432 345555655544 34 44444322 357999999
Q ss_pred CCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 233 LKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 233 ~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
.+.+-...-......|.+..+. ..+ +.+.+.+|+.+-.. .+.|-++|..+.
T Consensus 372 ~t~kl~~~i~vgg~~Phpg~g~--~~~-~p~~g~v~~t~~~g---~~~Vsvid~~~~ 422 (567)
T 1qks_A 372 KEGKLVAIEDTGGQTPHPGRGA--NFV-HPTFGPVWATSHMG---DDSVALIGTDPE 422 (567)
T ss_dssp TTTEEEEEEECSSSSBCCTTCE--EEE-ETTTEEEEEEEBSS---SSEEEEEECCTT
T ss_pred CCCcEEEEEeccCcCCCCccce--eeE-CCCCCcEEEeCCCC---CCeEEEecCCCC
Confidence 9886433222102233332222 222 33335667665321 236888887763
No 235
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=86.22 E-value=24 Score=33.74 Aligned_cols=157 Identities=7% Similarity=-0.041 Sum_probs=86.9
Q ss_pred eEEEEE--CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCe
Q 007111 50 HSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLND 125 (617)
Q Consensus 50 hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~ 125 (617)
++++.. ++.||+.-.. ...+++|++....-..+... .+ .....+++. ++.||+..... ....
T Consensus 82 ~~ia~d~~~~~lyv~d~~------~~~I~~~~~~g~~~~~~~~~-~~---~~P~~i~vd~~~g~lyv~~~~~----~~~~ 147 (267)
T 1npe_A 82 EGIALDHLGRTIFWTDSQ------LDRIEVAKMDGTQRRVLFDT-GL---VNPRGIVTDPVRGNLYWTDWNR----DNPK 147 (267)
T ss_dssp EEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECS-SC---SSEEEEEEETTTTEEEEEECCS----SSCE
T ss_pred cEEEEEecCCeEEEEECC------CCEEEEEEcCCCCEEEEEEC-CC---CCccEEEEeeCCCEEEEEECCC----CCcE
Confidence 445543 5799988543 24689999876543333211 11 223344444 57999875321 1357
Q ss_pred EEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceE
Q 007111 126 LHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCC 204 (617)
Q Consensus 126 v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha 204 (617)
++++++....-..+.. ..+ ..-..+++- +++.||+.-.. .+.|++||+.+..-..+.... ..| ++
T Consensus 148 I~~~~~dg~~~~~~~~-~~~---~~P~gia~d~~~~~lyv~d~~-----~~~I~~~~~~g~~~~~~~~~~--~~P---~g 213 (267)
T 1npe_A 148 IETSHMDGTNRRILAQ-DNL---GLPNGLTFDAFSSQLCWVDAG-----THRAECLNPAQPGRRKVLEGL--QYP---FA 213 (267)
T ss_dssp EEEEETTSCCCEEEEC-TTC---SCEEEEEEETTTTEEEEEETT-----TTEEEEEETTEEEEEEEEECC--CSE---EE
T ss_pred EEEEecCCCCcEEEEE-CCC---CCCcEEEEcCCCCEEEEEECC-----CCEEEEEecCCCceEEEecCC--CCc---eE
Confidence 8999987544333321 111 112233443 34558887543 256999999764333332211 112 34
Q ss_pred EEEECCEEEEEecCCCCCccceEEEEECCCCcEEE
Q 007111 205 GVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 239 (617)
Q Consensus 205 ~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~ 239 (617)
++..++.+|+....+ +.++++|+.+.+...
T Consensus 214 i~~d~~~lyva~~~~-----~~v~~~d~~~g~~~~ 243 (267)
T 1npe_A 214 VTSYGKNLYYTDWKT-----NSVIAMDLAISKEMD 243 (267)
T ss_dssp EEEETTEEEEEETTT-----TEEEEEETTTTEEEE
T ss_pred EEEeCCEEEEEECCC-----CeEEEEeCCCCCceE
Confidence 555688999975433 468999998776443
No 236
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=86.01 E-value=34 Score=36.26 Aligned_cols=71 Identities=11% Similarity=0.134 Sum_probs=41.5
Q ss_pred CCEEEEEecCC----CCCccceEEEEECCCCcEEE-eecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEE
Q 007111 209 GTKWYIAGGGS----RKKRHAETLIFDILKGEWSV-AITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEV 283 (617)
Q Consensus 209 ~~~IyI~GG~s----~~~~~~~v~~yDl~~~~W~~-l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~v 283 (617)
++++|+.-... .....++++++|..+.+-.. ++ .+..-++ +.+..+++..+|+.-+. .+.|.+
T Consensus 330 g~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~-------vg~~P~g-ia~spDg~~~lyv~n~~----s~~VsV 397 (426)
T 3c75_H 330 SDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE-------LGHEIDS-INVSQDAEPLLYALSAG----TQTLHI 397 (426)
T ss_dssp GTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-------EEEEECE-EEECCSSSCEEEEEETT----TTEEEE
T ss_pred CCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE-------CCCCcCe-EEEccCCCEEEEEEcCC----CCeEEE
Confidence 67899974311 11234689999998875332 21 1222223 33443443377776643 358999
Q ss_pred EECCCCcc
Q 007111 284 LSIEKNES 291 (617)
Q Consensus 284 yd~~~~~W 291 (617)
+|..+.+-
T Consensus 398 ID~~t~kv 405 (426)
T 3c75_H 398 YDAATGEE 405 (426)
T ss_dssp EETTTCCE
T ss_pred EECCCCCE
Confidence 99998774
No 237
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=85.97 E-value=25 Score=33.72 Aligned_cols=197 Identities=13% Similarity=0.140 Sum_probs=94.4
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCC--CcEEEeeccCCCCCCcceeEEEEE----CCEEEEEeecCCCCCccCeEEEE
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTET--ECWSVVEAKGDIPVARSGHTVVRA----SSVLILFGGEDGKRRKLNDLHMF 129 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t--~~W~~~~~~g~~P~~R~~~s~~~~----~~~IYv~GG~~~~~~~~~~v~~y 129 (617)
++.+++.|+.+ ..+.+||..+ ..|..... +........++.+ ++.+++.|+.++ .+.+|
T Consensus 22 ~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~d~~~l~s~~~dg------~v~vw 86 (351)
T 3f3f_A 22 YGRHVATCSSD------QHIKVFKLDKDTSNWELSDS---WRAHDSSIVAIDWASPEYGRIIASASYDK------TVKLW 86 (351)
T ss_dssp SSSEEEEEETT------SEEEEEEECSSSCCEEEEEE---EECCSSCEEEEEECCGGGCSEEEEEETTS------CEEEE
T ss_pred CCCEEEEeeCC------CeEEEEECCCCCCcceecce---eccCCCcEEEEEEcCCCCCCEEEEEcCCC------eEEEE
Confidence 45666677653 2466666654 44554431 1111222222222 267778887654 37788
Q ss_pred ECCCC-------cEEEeecCCCCCCCCccc-EEEEEC---CcEEEEEccCCCCCCCCeEEEEECCCCc----EEEe---e
Q 007111 130 DLKSL-------TWLPLHCTGTGPSPRSNH-VAALYD---DKNLLIFGGSSKSKTLNDLYSLDFETMI----WTRI---K 191 (617)
Q Consensus 130 D~~t~-------~W~~l~~~g~~P~~R~~h-~a~~~~---~~~LyV~GG~~~~~~~n~v~~yD~~t~~----W~~~---~ 191 (617)
|+.+. .|..+.. +....... +++... +. +++.|+.++ .+..||+.+.. |... .
T Consensus 87 d~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~ 157 (351)
T 3f3f_A 87 EEDPDQEECSGRRWNKLCT---LNDSKGSLYSVKFAPAHLGL-KLACLGNDG-----ILRLYDALEPSDLRSWTLTSEMK 157 (351)
T ss_dssp EECTTSCTTSSCSEEEEEE---ECCCSSCEEEEEECCGGGCS-EEEEEETTC-----EEEEEECSSTTCTTCCEEEEEEE
T ss_pred ecCCCcccccccCcceeee---ecccCCceeEEEEcCCCCCc-EEEEecCCC-----cEEEecCCChHHhcccccccccc
Confidence 87764 3444421 11111111 223333 45 677777664 48899986543 2211 1
Q ss_pred cCCCCCCC--CcceEEEEE----CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCC-
Q 007111 192 IRGFHPSP--RAGCCGVLC----GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEK- 264 (617)
Q Consensus 192 ~~g~~P~~--R~~ha~v~~----~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~- 264 (617)
.....+.. ....++... ++..+++|+..+ .+..++.....+..+..... .......+.+...+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~----h~~~i~~~~~~p~~~~ 228 (351)
T 3f3f_A 158 VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQ-----AIIYQRGKDGKLHVAAKLPG----HKSLIRSISWAPSIGR 228 (351)
T ss_dssp SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTE-----EEEEEECTTSCEEEEEECCC----CCSCEEEEEECCCSSC
T ss_pred ccccccCCcccceeEEEeccCCCCCcEEEEecCCC-----cEEEEccCCCceeeeeecCC----CCcceeEEEECCCCCC
Confidence 11001111 111222222 266777776543 24555556666544432221 122333444443221
Q ss_pred -cEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 265 -DFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 265 -~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
..+++.|+.++ .|.+||+...
T Consensus 229 ~~~~l~s~~~dg----~i~iwd~~~~ 250 (351)
T 3f3f_A 229 WYQLIATGCKDG----RIRIFKITEK 250 (351)
T ss_dssp SSEEEEEEETTS----CEEEEEEEEC
T ss_pred cceEEEEEcCCC----eEEEEeCCCC
Confidence 16888888764 4788887654
No 238
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=85.47 E-value=53 Score=38.55 Aligned_cols=75 Identities=19% Similarity=0.217 Sum_probs=43.0
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCC----CCCccCeEEEEEC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDG----KRRKLNDLHMFDL 131 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~----~~~~~~~v~~yD~ 131 (617)
+++.+++++.. ..++++|+.+.....+... ...........-+++.+++++.+. .......++++|+
T Consensus 389 DG~~la~~~~~------~~v~~~d~~tg~~~~~~~~---~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~ 459 (1045)
T 1k32_A 389 NGKFAVVANDR------FEIMTVDLETGKPTVIERS---REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM 459 (1045)
T ss_dssp TSSEEEEEETT------SEEEEEETTTCCEEEEEEC---SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET
T ss_pred CCCEEEEECCC------CeEEEEECCCCceEEeccC---CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEEC
Confidence 55555565542 3799999999887665421 111112222233566556665433 0112468999999
Q ss_pred CCCcEEEe
Q 007111 132 KSLTWLPL 139 (617)
Q Consensus 132 ~t~~W~~l 139 (617)
.+.+...+
T Consensus 460 ~~g~~~~l 467 (1045)
T 1k32_A 460 EGRKIFAA 467 (1045)
T ss_dssp TTTEEEEC
T ss_pred CCCcEEEe
Confidence 98876555
No 239
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=85.00 E-value=1.9 Score=51.71 Aligned_cols=76 Identities=14% Similarity=0.167 Sum_probs=39.8
Q ss_pred HhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhH-HhHHhhhcccccccCCCcchhhhHHHHHHHHHHHH
Q 007111 492 ALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE-LAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQ 570 (617)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e-~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (617)
+...+++++..+.+.-+..++++++++...+|.+.|+|+...++ .-||..++ ...+|-.||..+.-|...+.+.+
T Consensus 975 ~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~----L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A 975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE----LKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555556666666666677777777766665443 11122222 23355555555555554444433
Q ss_pred H
Q 007111 571 K 571 (617)
Q Consensus 571 ~ 571 (617)
+
T Consensus 1051 ~ 1051 (1080)
T 2dfs_A 1051 K 1051 (1080)
T ss_dssp H
T ss_pred H
Confidence 3
No 240
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=84.98 E-value=25 Score=36.03 Aligned_cols=156 Identities=13% Similarity=0.173 Sum_probs=79.0
Q ss_pred CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCc
Q 007111 107 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI 186 (617)
Q Consensus 107 ~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~ 186 (617)
++.+++.|+.++ .+.+||+.+.+-...-. +. +....-.+++...+..+++.|+.++ .+..||+.++.
T Consensus 181 ~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~-~~-~h~~~v~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~~ 247 (437)
T 3gre_A 181 EKSLLVALTNLS------RVIIFDIRTLERLQIIE-NS-PRHGAVSSICIDEECCVLILGTTRG-----IIDIWDIRFNV 247 (437)
T ss_dssp SCEEEEEEETTS------EEEEEETTTCCEEEEEE-CC-GGGCCEEEEEECTTSCEEEEEETTS-----CEEEEETTTTE
T ss_pred CCCEEEEEeCCC------eEEEEeCCCCeeeEEEc-cC-CCCCceEEEEECCCCCEEEEEcCCC-----eEEEEEcCCcc
Confidence 367777777643 58999998876433210 11 0111111222333333777788764 39999998876
Q ss_pred EEEeecCCCCCCCCcceEEEEE-----CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCC-------CC-----
Q 007111 187 WTRIKIRGFHPSPRAGCCGVLC-----GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSS-------VT----- 249 (617)
Q Consensus 187 W~~~~~~g~~P~~R~~ha~v~~-----~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~-------p~----- 249 (617)
....... +....-.+++.. ++.+++.|+.. ..+.+||+.+..-...-...... |.
T Consensus 248 ~~~~~~~---~~~~~v~~~~~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 319 (437)
T 3gre_A 248 LIRSWSF---GDHAPITHVEVCQFYGKNSVIVVGGSSK-----TFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLE 319 (437)
T ss_dssp EEEEEBC---TTCEEEEEEEECTTTCTTEEEEEEESTT-----EEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGG
T ss_pred EEEEEec---CCCCceEEEEeccccCCCccEEEEEcCC-----CcEEEEEcCCCcEEEEEEcCCCCCccceecccccccc
Confidence 5543221 111111122111 23455555443 35889998876533221101000 00
Q ss_pred --------CCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 250 --------SNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 250 --------~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
......++.+. .+.+++.||.++ .|.+||+.+.+
T Consensus 320 ~~~~~~~~~~~~v~~l~~~---~~~~l~s~~~d~----~i~~wd~~~~~ 361 (437)
T 3gre_A 320 ELNFCGIRSLNALSTISVS---NDKILLTDEATS----SIVMFSLNELS 361 (437)
T ss_dssp GCCCCCCCSGGGGCCEEEE---TTEEEEEEGGGT----EEEEEETTCGG
T ss_pred cceecccccCCceEEEEEC---CceEEEecCCCC----eEEEEECCCcc
Confidence 11112233333 246778888754 68999988765
No 241
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=84.97 E-value=2.3 Score=42.14 Aligned_cols=62 Identities=11% Similarity=0.052 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhh--hhhHHHHHHHHHHHHHHHHHHHHHH
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV--LKSRQEMEKKLADSLKEMELLKEKL 531 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lkek~ 531 (617)
..+.++.++-+....++.+++++.+..+..++.+.+| -|.++.|.+.+....++++.|.+++
T Consensus 50 ~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~ei 113 (256)
T 3na7_A 50 NLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREI 113 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555566666666666666666666555 2334444444444444444433333
No 242
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=84.95 E-value=2.3 Score=36.08 Aligned_cols=59 Identities=17% Similarity=0.121 Sum_probs=31.4
Q ss_pred HHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007111 477 ALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 477 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e 535 (617)
.++.+...++.++.++-...+++|..+.++.+-.|.+|..|..+.......++||...+
T Consensus 20 ~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~e 78 (101)
T 3u1c_A 20 NALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAE 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666666665555555555555444444444444444333
No 243
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=84.93 E-value=35 Score=34.49 Aligned_cols=181 Identities=8% Similarity=-0.030 Sum_probs=89.6
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEE-ECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 93 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~-~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~ 93 (617)
.+.++|+.+.+....-.. . .. -.+++. -++++++.|+. +.+.+++..+......... .
T Consensus 158 ~i~iwd~~~~~~~~~~~~----------~--~~-V~~v~fspdg~~l~s~s~-------~~~~~~~~~~~~~~~~~~~-~ 216 (365)
T 4h5i_A 158 IMRIIDPSDLTEKFEIET----------R--GE-VKDLHFSTDGKVVAYITG-------SSLEVISTVTGSCIARKTD-F 216 (365)
T ss_dssp EEEEEETTTTEEEEEEEC----------S--SC-CCEEEECTTSSEEEEECS-------SCEEEEETTTCCEEEEECC-C
T ss_pred EEEEeECCCCcEEEEeCC----------C--Cc-eEEEEEccCCceEEeccc-------eeEEEEEeccCcceeeeec-C
Confidence 578888887765432210 0 11 122222 25566666543 2367777777765443311 1
Q ss_pred CCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCccc-EEEEE-CCcEEEEEccCCCC
Q 007111 94 IPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH-VAALY-DDKNLLIFGGSSKS 171 (617)
Q Consensus 94 ~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h-~a~~~-~~~~LyV~GG~~~~ 171 (617)
............-++..++.++.+... ...++.+|.....+...... .+......- ++++. +++ +++.|+.++
T Consensus 217 ~~~~~v~~v~fspdg~~l~~~s~d~~~--~~~i~~~~~~~~~~~~~~~~-~~~~~~~~V~~~~~Spdg~-~lasgs~D~- 291 (365)
T 4h5i_A 217 DKNWSLSKINFIADDTVLIAASLKKGK--GIVLTKISIKSGNTSVLRSK-QVTNRFKGITSMDVDMKGE-LAVLASNDN- 291 (365)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEESSSC--CEEEEEEEEETTEEEEEEEE-EEESSCSCEEEEEECTTSC-EEEEEETTS-
T ss_pred CCCCCEEEEEEcCCCCEEEEEecCCcc--eeEEeecccccceecceeee-eecCCCCCeEeEEECCCCC-ceEEEcCCC-
Confidence 111111222233477888888776542 34567777766665433110 111111111 22233 455 778888774
Q ss_pred CCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECC
Q 007111 172 KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL 233 (617)
Q Consensus 172 ~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~ 233 (617)
.|.+||..+.+-......+ ....-.+++.. ++++++.|+.. ..+.++|+.
T Consensus 292 ----~V~iwd~~~~~~~~~~~~g---H~~~V~~v~fSpdg~~laS~S~D-----~tvrvw~ip 342 (365)
T 4h5i_A 292 ----SIALVKLKDLSMSKIFKQA---HSFAITEVTISPDSTYVASVSAA-----NTIHIIKLP 342 (365)
T ss_dssp ----CEEEEETTTTEEEEEETTS---SSSCEEEEEECTTSCEEEEEETT-----SEEEEEECC
T ss_pred ----EEEEEECCCCcEEEEecCc---ccCCEEEEEECCCCCEEEEEeCC-----CeEEEEEcC
Confidence 4999999887644321111 01111223332 66777776654 246777764
No 244
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=84.60 E-value=32 Score=37.05 Aligned_cols=140 Identities=13% Similarity=0.080 Sum_probs=74.0
Q ss_pred ceEEEEEEC--CCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCC
Q 007111 72 RVSVWTFDT--ETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR 149 (617)
Q Consensus 72 ~~~v~~yd~--~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R 149 (617)
...+|.+++ ....- .+. ..+..+ ..+....++.+++..+..+. +.+||+.+.....+.. .+.
T Consensus 89 ~~~l~~~~~~~~g~~~-~l~---~~~~~~-~~~~s~dg~~~~~~s~~~~~------~~l~d~~~g~~~~l~~---~~~-- 152 (582)
T 3o4h_A 89 QHALFKVNTSRPGEEQ-RLE---AVKPMR-ILSGVDTGEAVVFTGATEDR------VALYALDGGGLRELAR---LPG-- 152 (582)
T ss_dssp CEEEEEEETTSTTCCE-ECT---TSCSBE-EEEEEECSSCEEEEEECSSC------EEEEEEETTEEEEEEE---ESS--
T ss_pred ceEEEEEeccCCCccc-ccc---CCCCce-eeeeCCCCCeEEEEecCCCC------ceEEEccCCcEEEeec---CCC--
Confidence 457888887 44433 332 112222 22333334456666554332 3477888888777641 121
Q ss_pred cccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEE
Q 007111 150 SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETL 228 (617)
Q Consensus 150 ~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~ 228 (617)
...+..-+++ .+++++.+... ...++++|+.++.+..+... .......+.. +++.++.+...+ ...++
T Consensus 153 -~~~~~spDG~-~la~~~~~~~~-~~~i~~~d~~~g~~~~l~~~-----~~~~~~~~~SpDG~~l~~~~~~~---~~~i~ 221 (582)
T 3o4h_A 153 -FGFVSDIRGD-LIAGLGFFGGG-RVSLFTSNLSSGGLRVFDSG-----EGSFSSASISPGMKVTAGLETAR---EARLV 221 (582)
T ss_dssp -CEEEEEEETT-EEEEEEEEETT-EEEEEEEETTTCCCEEECCS-----SCEEEEEEECTTSCEEEEEECSS---CEEEE
T ss_pred -ceEEECCCCC-EEEEEEEcCCC-CeEEEEEcCCCCCceEeecC-----CCccccceECCCCCEEEEccCCC---eeEEE
Confidence 2233334677 44544443211 13599999999998866432 1111222222 555444433222 24699
Q ss_pred EEECCCCcEE
Q 007111 229 IFDILKGEWS 238 (617)
Q Consensus 229 ~yDl~~~~W~ 238 (617)
++|+.+....
T Consensus 222 ~~d~~~~~~~ 231 (582)
T 3o4h_A 222 TVDPRDGSVE 231 (582)
T ss_dssp EECTTTCCEE
T ss_pred EEcCCCCcEE
Confidence 9999988877
No 245
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=84.45 E-value=4.7 Score=36.63 Aligned_cols=119 Identities=18% Similarity=0.198 Sum_probs=70.2
Q ss_pred HHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCc
Q 007111 474 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNV 553 (617)
Q Consensus 474 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~ 553 (617)
+|+.+=......+..|+.|++-++.|+|.....-+.+.-||.+-..-...|+.|...|..+...-|+|.
T Consensus 4 ri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeead----------- 72 (147)
T 2b9c_A 4 RIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDAD----------- 72 (147)
T ss_dssp -------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 334444444556666778899999999988888888888888777777777777777777766666552
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhhc
Q 007111 554 RLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLEN 606 (617)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (617)
+.....--=|.-++.+|.-+-.-+-.=-++.-+|+-++..+-+.|.|||-
T Consensus 73 ---rKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 73 ---RKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLED 122 (147)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 22222222233334444422111111123444677778888888888873
No 246
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=83.89 E-value=35 Score=33.65 Aligned_cols=208 Identities=11% Similarity=0.004 Sum_probs=104.8
Q ss_pred eEEEEE--CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCC------
Q 007111 50 HSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGK------ 119 (617)
Q Consensus 50 hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~------ 119 (617)
++++.. +++|||.... ..+++||+.+...+.+.....-........++.. ++.||+.-.....
T Consensus 83 ~gi~~~~~~g~l~v~d~~-------~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~ 155 (322)
T 2fp8_A 83 YDISYNLQNNQLYIVDCY-------YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQ 155 (322)
T ss_dssp EEEEEETTTTEEEEEETT-------TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHH
T ss_pred ceEEEcCCCCcEEEEECC-------CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccc
Confidence 455555 5789987432 2488999887765555421110111223334443 4688886422100
Q ss_pred -----CCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCC---CcEEEe
Q 007111 120 -----RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFET---MIWTRI 190 (617)
Q Consensus 120 -----~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t---~~W~~~ 190 (617)
......+++||+.+.....+.. .+..+ ...++. +++.|||.-.. .+.|++|++.+ ..+..+
T Consensus 156 ~~~~~~~~~g~v~~~d~~~~~~~~~~~--~~~~p---~gia~~~dg~~lyv~d~~-----~~~I~~~~~~~~~~~~~~~~ 225 (322)
T 2fp8_A 156 QIMDTSDKTGRLIKYDPSTKETTLLLK--ELHVP---GGAEVSADSSFVLVAEFL-----SHQIVKYWLEGPKKGTAEVL 225 (322)
T ss_dssp HHHHHTCCCEEEEEEETTTTEEEEEEE--EESCC---CEEEECTTSSEEEEEEGG-----GTEEEEEESSSTTTTCEEEE
T ss_pred eehcccCCCceEEEEeCCCCEEEEecc--CCccC---cceEECCCCCEEEEEeCC-----CCeEEEEECCCCcCCccceE
Confidence 0123569999998887665421 11111 234443 34457776332 24699999875 344444
Q ss_pred ecCCCCCCCCcceEEEEE-CCEEEEEecCCCC-----CccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCC
Q 007111 191 KIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRK-----KRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEK 264 (617)
Q Consensus 191 ~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~-----~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~ 264 (617)
... +. -..++.. ++.+||....... .....+++||+.......+...... + ....+.+... .
T Consensus 226 ~~~---~g---P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~-~--~~~~~~~~~~---~ 293 (322)
T 2fp8_A 226 VKI---PN---PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPF-A--GEHFEQIQEH---D 293 (322)
T ss_dssp EEC---SS---EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTT-T--TSCCCEEEEE---T
T ss_pred EeC---CC---CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCC-c--cccceEEEEe---C
Confidence 322 21 1223333 5678887532100 1124688999876555555432111 1 1122233332 4
Q ss_pred cEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 265 DFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 265 ~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
+.|||.+.. .+.|.+|++..+.
T Consensus 294 g~L~v~~~~----~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 294 GLLYIGTLF----HGSVGILVYDKKG 315 (322)
T ss_dssp TEEEEECSS----CSEEEEEEC----
T ss_pred CEEEEeecC----CCceEEEeccccc
Confidence 778876533 3478899886543
No 247
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=83.17 E-value=32 Score=32.68 Aligned_cols=155 Identities=12% Similarity=0.162 Sum_probs=83.6
Q ss_pred eEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeecc---CCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCe
Q 007111 50 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK---GDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLND 125 (617)
Q Consensus 50 hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~---g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~ 125 (617)
-+++...+.+|+|=|. .+|+++.....+...... ..+| ....++.... ++++|+|-| +.
T Consensus 27 DAi~~~~g~~y~Fkg~--------~~wr~~~~~~~~~p~~I~~~wp~Lp-~~iDAa~~~~~~~~iyfFkG--------~~ 89 (207)
T 1pex_A 27 DAITSLRGETMIFKDR--------FFWRLHPQQVDAELFLTKSFWPELP-NRIDAAYEHPSHDLIFIFRG--------RK 89 (207)
T ss_dssp SEEEEETTEEEEEETT--------EEEEECSSSSCCEEEEHHHHCTTSC-SSCCEEEEETTTTEEEEEET--------TE
T ss_pred eEEEeCCCcEEEEECC--------EEEEEeCCCcCCCceehhHhccCCC-CCccEEEEeccCCcEEEEcc--------CE
Confidence 4566679999999664 589998765444332221 1234 2344333332 589999855 34
Q ss_pred EEEEECCCCcE---EEeecCCCCCCC--CcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEE-----ee-cC
Q 007111 126 LHMFDLKSLTW---LPLHCTGTGPSP--RSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-----IK-IR 193 (617)
Q Consensus 126 v~~yD~~t~~W---~~l~~~g~~P~~--R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~-----~~-~~ 193 (617)
+|+|+-.+-.- +.+... .+|.. ... ++... ++..+|+|-|. ..|+||..+.+-.. +. .-
T Consensus 90 ~w~~~~~~~~~gyPk~I~~~-GlP~~~~~ID-AA~~~~~~gk~yfFkG~-------~ywr~d~~~~~~d~gyPr~i~~~~ 160 (207)
T 1pex_A 90 FWALNGYDILEGYPKKISEL-GLPKEVKKIS-AAVHFEDTGKTLLFSGN-------QVWRYDDTNHIMDKDYPRLIEEDF 160 (207)
T ss_dssp EEEESTTCCCTTCSEESTTT-TCCTTCCCCC-EEEECTTTSEEEEEETT-------EEEEEETTTTEECSSCCCBHHHHS
T ss_pred EEEEeCCeeccCCceecccc-CCCCCCcccc-EEEEeCCCCEEEEEeCC-------EEEEEeCcCccccCCCCccHHHcC
Confidence 67775332111 222111 13321 222 33333 32348999773 58999987653221 00 01
Q ss_pred CCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEE
Q 007111 194 GFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 239 (617)
Q Consensus 194 g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~ 239 (617)
+-+| ..-.++...++.+|+|-| +..|+||..+.+-..
T Consensus 161 ~Gip--~~iDaAf~~~g~~YfFkg-------~~y~rf~~~~~~v~~ 197 (207)
T 1pex_A 161 PGIG--DKVDAVYEKNGYIYFFNG-------PIQFEYSIWSNRIVR 197 (207)
T ss_dssp TTSC--SCCSEEEEETTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred CCCC--CCccEEEEcCCcEEEEEC-------CEEEEEeCCccEEec
Confidence 1122 222344456999999987 458999987765443
No 248
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=82.95 E-value=55 Score=35.17 Aligned_cols=218 Identities=13% Similarity=0.031 Sum_probs=99.9
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCC----cEEEeeccCCC--CCC-cceeEEE-EECCEEEEEeecCCCCCccCeEE
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETE----CWSVVEAKGDI--PVA-RSGHTVV-RASSVLILFGGEDGKRRKLNDLH 127 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~----~W~~~~~~g~~--P~~-R~~~s~~-~~~~~IYv~GG~~~~~~~~~~v~ 127 (617)
+.++||-|.. .+.+++||..++ +-.+.-....+ +.. ...|.+. .-++ |||-.--+..+.....+.
T Consensus 95 r~~l~v~~l~------s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~ 167 (462)
T 2ece_A 95 RRFLIVPGLR------SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGIL 167 (462)
T ss_dssp SCEEEEEBTT------TCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEE
T ss_pred CCEEEEccCC------CCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEE
Confidence 5567776654 257999999866 22221100001 111 1234333 3455 776432222333468899
Q ss_pred EEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEc---------cCCCC----CCCCeEEEEECCCCcEEEeecC
Q 007111 128 MFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFG---------GSSKS----KTLNDLYSLDFETMIWTRIKIR 193 (617)
Q Consensus 128 ~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~G---------G~~~~----~~~n~v~~yD~~t~~W~~~~~~ 193 (617)
++|..+++-..--..+..|. -+++-.... +.+.+|+.- |+... ...+.|..||..+++-...-..
T Consensus 168 vlD~~T~~v~~~~~~~~~~~-~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v 246 (462)
T 2ece_A 168 MLDHYSFEPLGKWEIDRGDQ-YLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL 246 (462)
T ss_dssp EECTTTCCEEEECCSBCTTC-CCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred EEECCCCeEEEEEccCCCCc-cccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence 99999876432211122221 222223333 344344431 22221 3568899999988643332222
Q ss_pred CCC-CCCCcceEEEEE---CCEEEEEecCCCCCccceEEEEECCCCcEEEeecC--CCC-----CC---CC----CcceE
Q 007111 194 GFH-PSPRAGCCGVLC---GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITS--PSS-----SV---TS----NKGFT 255 (617)
Q Consensus 194 g~~-P~~R~~ha~v~~---~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~--~~~-----~p---~~----r~~~s 255 (617)
+.. ..|| +....+ +...|+..-.+...-.+.+++|..+...|...... +.. .| .. ....+
T Consensus 247 g~~g~~P~--~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 247 GEENRMAL--ELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp CTTEEEEE--EEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred CCCCCccc--eeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 100 0111 111111 34566665422111224455544445778766532 110 01 00 11233
Q ss_pred EEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 256 LVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 256 ~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
.+.+.. ++.+||+.-- ..+.|.+||+..
T Consensus 325 ~I~lS~-DGrfLYVSnr----g~d~VavfdV~d 352 (462)
T 2ece_A 325 DIDISL-DDKFLYLSLW----GIGEVRQYDISN 352 (462)
T ss_dssp CEEECT-TSCEEEEEET----TTTEEEEEECSS
T ss_pred EEEECC-CCCEEEEEeC----CCCEEEEEEecC
Confidence 344443 3456665332 136899999863
No 249
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=82.69 E-value=21 Score=34.05 Aligned_cols=153 Identities=14% Similarity=0.110 Sum_probs=76.6
Q ss_pred EEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecC---CCCCCCCcccEEEEE--CCcEEEEEccCCCCCCCCe
Q 007111 102 TVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT---GTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLND 176 (617)
Q Consensus 102 s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~---g~~P~~R~~h~a~~~--~~~~LyV~GG~~~~~~~n~ 176 (617)
+++...+.+|+|=| ..+|+++.....+...... ..+|.. .. ++... +++ +|+|=|. .
T Consensus 28 Ai~~~~g~~y~Fkg--------~~~wr~~~~~~~~~p~~I~~~wp~Lp~~-iD-Aa~~~~~~~~-iyfFkG~-------~ 89 (207)
T 1pex_A 28 AITSLRGETMIFKD--------RFFWRLHPQQVDAELFLTKSFWPELPNR-ID-AAYEHPSHDL-IFIFRGR-------K 89 (207)
T ss_dssp EEEEETTEEEEEET--------TEEEEECSSSSCCEEEEHHHHCTTSCSS-CC-EEEEETTTTE-EEEEETT-------E
T ss_pred EEEeCCCcEEEEEC--------CEEEEEeCCCcCCCceehhHhccCCCCC-cc-EEEEeccCCc-EEEEccC-------E
Confidence 34457899999844 3467776554433322111 234432 22 33333 355 8998774 3
Q ss_pred EEEEECCCCcE---EEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCC----C
Q 007111 177 LYSLDFETMIW---TRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS----S 247 (617)
Q Consensus 177 v~~yD~~t~~W---~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~----~ 247 (617)
+|+|+-.+..- ..+...|.+..+..--++... ++++|+|-| +..|+||..+.+-. ...|-. .
T Consensus 90 ~w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG-------~~ywr~d~~~~~~d--~gyPr~i~~~~ 160 (207)
T 1pex_A 90 FWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG-------NQVWRYDDTNHIMD--KDYPRLIEEDF 160 (207)
T ss_dssp EEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET-------TEEEEEETTTTEEC--SSCCCBHHHHS
T ss_pred EEEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC-------CEEEEEeCcCcccc--CCCCccHHHcC
Confidence 77776432111 112212222111112233333 489999987 46899998764311 100100 0
Q ss_pred CCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 248 VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 248 p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
+.-....-++... .+.+|+|-|. ..|+||..+.+
T Consensus 161 ~Gip~~iDaAf~~---~g~~YfFkg~------~y~rf~~~~~~ 194 (207)
T 1pex_A 161 PGIGDKVDAVYEK---NGYIYFFNGP------IQFEYSIWSNR 194 (207)
T ss_dssp TTSCSCCSEEEEE---TTEEEEEETT------EEEEEETTTTE
T ss_pred CCCCCCccEEEEc---CCcEEEEECC------EEEEEeCCccE
Confidence 0001112233322 4788988875 68999987765
No 250
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=82.28 E-value=1.5 Score=57.80 Aligned_cols=98 Identities=14% Similarity=0.151 Sum_probs=47.6
Q ss_pred HHHHhchhhHhHHHHhhcHHHHhhhhhhhh------hhHHHHHHHHHHHHHHHHHHHHHHhhhHHh----HHhhhccccc
Q 007111 478 LIRKNGILEGQLAAALVNREAAEKNFSSVL------KSRQEMEKKLADSLKEMELLKEKLAGLELA----QEEANSLSNI 547 (617)
Q Consensus 478 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~lkek~~~~e~~----qe~~~~~~~~ 547 (617)
.....+.++.|-+.+.+.+++||++|+.|. +--.++|++|+.+.++.+.++++|+.+|.. |++.+
T Consensus 1978 v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~----- 2052 (3245)
T 3vkg_A 1978 ARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYA----- 2052 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 444555666777777777888888877764 223344444444444333333333333211 11111
Q ss_pred ccCCCcchhhhHHHHHHHHHHHHHhhhhhcc---chhhhccc
Q 007111 548 VHSDNVRLEHDVAFLKAVLDDTQKELHSTRG---VLAGERAR 586 (617)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 586 (617)
.+..|-+-|++-++.+++-|..-.. .|++||.|
T Consensus 2053 ------~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~R 2088 (3245)
T 3vkg_A 2053 ------TLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGR 2088 (3245)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 1123444555555555555554433 37777776
No 251
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=82.07 E-value=2.5 Score=41.21 Aligned_cols=74 Identities=22% Similarity=0.233 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhccccccc
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVH 549 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~ 549 (617)
...+.-+.+.++.+.|+-|=. .+-....+++.|++....-.+.+-+|||++|. +|
T Consensus 153 ~Lkk~~~~i~~~LelL~IRK~--------------ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEq--dE--------- 207 (242)
T 3uux_B 153 ALKSFSQTLVNSLEFLNIQKN--------------STLSEIRDIEVEVENLRQKKEKLLGKIANIEQ--NQ--------- 207 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH---------
T ss_pred HHHHHHHHHHHHHHHHHhHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hH---------
Confidence 344455566666666644433 33345567777777776666777777777763 22
Q ss_pred CCCcchhhhHHHHHHHHHHHHH
Q 007111 550 SDNVRLEHDVAFLKAVLDDTQK 571 (617)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~ 571 (617)
+-||||+.-++.-+++.|.
T Consensus 208 ---l~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 208 ---LLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp ---HHHHHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHHHHHHHHH
Confidence 4578888777777777765
No 252
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=82.06 E-value=2.9 Score=35.38 Aligned_cols=64 Identities=16% Similarity=0.090 Sum_probs=34.2
Q ss_pred HHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 007111 474 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELA 537 (617)
Q Consensus 474 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~ 537 (617)
+.-.++.+...+++++.++-...+++|..+.++-+=.+.++..+..+.......+.||...+.+
T Consensus 17 e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~ 80 (101)
T 3u59_A 17 DKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKK 80 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555556666666666666666666666555555555555544444444444444444433
No 253
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=82.02 E-value=63 Score=35.19 Aligned_cols=153 Identities=10% Similarity=0.025 Sum_probs=81.0
Q ss_pred CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCC-CCcc--cEEEEE-CCcEEEEEccCCCCCCCCeEEEEEC
Q 007111 107 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPS-PRSN--HVAALY-DDKNLLIFGGSSKSKTLNDLYSLDF 182 (617)
Q Consensus 107 ~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~-~R~~--h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~ 182 (617)
++.+++.||.++ .+.+||..+.+....-....+.. +..+ .+++.. ++. .++.||.++ .+.+||+
T Consensus 201 dg~~las~s~D~------~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~-----~v~lWd~ 268 (611)
T 1nr0_A 201 DGSLFASTGGDG------TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADK-----TIKIWNV 268 (611)
T ss_dssp TSSEEEEEETTS------CEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTS-----EEEEEET
T ss_pred CCCEEEEEECCC------cEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCC-----eEEEEeC
Confidence 567788887654 38889988776543310111100 1111 122333 445 777787764 5899999
Q ss_pred CCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeec
Q 007111 183 ETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHK 262 (617)
Q Consensus 183 ~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~ 262 (617)
.+..+......+. ........+..++..++.++..+ .+..+|+......... .. ......++.+..
T Consensus 269 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~s~s~d~-----~i~~~~~~~~~~~~~~--~g----h~~~v~~l~~sp- 334 (611)
T 1nr0_A 269 ATLKVEKTIPVGT--RIEDQQLGIIWTKQALVSISANG-----FINFVNPELGSIDQVR--YG----HNKAITALSSSA- 334 (611)
T ss_dssp TTTEEEEEEECCS--SGGGCEEEEEECSSCEEEEETTC-----CEEEEETTTTEEEEEE--CC----CSSCEEEEEECT-
T ss_pred CCCceeeeecCCC--CccceeEEEEEcCCEEEEEeCCC-----cEEEEeCCCCCcceEE--cC----CCCCEEEEEEeC-
Confidence 9887765443211 11111223334666666666543 3678888766533221 10 111233344432
Q ss_pred CCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 263 EKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 263 ~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
++..++.|+.++ .|.++|+.+..
T Consensus 335 -dg~~l~s~s~D~----~v~~Wd~~~~~ 357 (611)
T 1nr0_A 335 -DGKTLFSADAEG----HINSWDISTGI 357 (611)
T ss_dssp -TSSEEEEEETTS----CEEEEETTTCC
T ss_pred -CCCEEEEEeCCC----cEEEEECCCCc
Confidence 344666777654 57888887654
No 254
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=81.97 E-value=10 Score=33.96 Aligned_cols=91 Identities=16% Similarity=0.284 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHH--hchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhccc
Q 007111 468 YQFYESKMAALIRK--NGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLS 545 (617)
Q Consensus 468 ~~~~~~~~~~~~~~--~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~ 545 (617)
-++.+.+|..+... +..+...-.+.|+.+--|..-+. .-+..++|+..+++..+|+..||+++..+...-|++
T Consensus 34 A~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k-~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~---- 108 (138)
T 3hnw_A 34 ASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFK-AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESS---- 108 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 36889999999966 89998888888888877665432 234677888999999999999999998877665553
Q ss_pred ccccCCCcchhhhHHHHHHHHHHHHHhh
Q 007111 546 NIVHSDNVRLEHDVAFLKAVLDDTQKEL 573 (617)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (617)
+.++.-|+.=+.++|+++
T Consensus 109 ----------~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 109 ----------AKEIKELKSEINKYQKNI 126 (138)
T ss_dssp ----------HHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHHH
Confidence 344555555555555443
No 255
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=81.88 E-value=75 Score=35.96 Aligned_cols=234 Identities=18% Similarity=0.237 Sum_probs=119.8
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCC--cccce-EEEEE---CCEEEEEcccCC-CCC-CceEEEEEECCCCcEE
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIP--ACRGH-SLISW---GKKVLLVGGKTD-SGS-DRVSVWTFDTETECWS 86 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p--~r~~h-s~v~~---g~~lyV~GG~~~-~~~-~~~~v~~yd~~t~~W~ 86 (617)
.+++.+-...+|+.+... .... ...+. +++.. .+.||+..|... ... ....+++=.-.-.+|+
T Consensus 46 gv~rS~D~G~tW~~i~~~---------~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~~~l~~S~DgG~TW~ 116 (737)
T 2cn3_A 46 GAYRWDPSTETWIPLLDH---------FQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNMGAILRSTDRGETWE 116 (737)
T ss_dssp CEEEEETTTTEEEECCTT---------CCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCCCEEEEESSSSSSCE
T ss_pred cEEEeCCCCCCEEECcCc---------cCcccccCCCcceEEeCCCCCCEEEEEecccccccccCCccEEEeCCCCCCcc
Confidence 588888888999987641 0000 01123 33332 257888765311 111 1235666555667899
Q ss_pred EeeccCC----CCCCcceeEEEEE---CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCC----------
Q 007111 87 VVEAKGD----IPVARSGHTVVRA---SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR---------- 149 (617)
Q Consensus 87 ~~~~~g~----~P~~R~~~s~~~~---~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R---------- 149 (617)
.+..... +|.....+.++.. .+.||+-. ..+ ..+|+=+-...+|+++. .+|..-
T Consensus 117 ~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~-~~g-----~gl~~S~DgG~tW~~~~---~~~~~~~~~~~p~~~~ 187 (737)
T 2cn3_A 117 KTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGT-RCG-----NGLWRSTDYGVTWSKVE---SFPNPGTYIYDPNFDY 187 (737)
T ss_dssp EEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEEC-STT-----CCEEEESSTTSSCEECT---TCCCCCCCBSCTTSTT
T ss_pred cCCCCcccCCCcCcccccceEEECCCCCCEEEEee-ccC-----CcEEEeCCCCcceeccc---CCCCCcccccCccccc
Confidence 9864211 1211122344443 24666632 111 23444333345799884 233210
Q ss_pred ----cccEEEEECC---------cEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEE
Q 007111 150 ----SNHVAALYDD---------KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIA 215 (617)
Q Consensus 150 ----~~h~a~~~~~---------~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~ 215 (617)
.+...+.++. ..||+.-+... ..+++=.=.-.+|+.+... |.....|.++.. ++.+|+.
T Consensus 188 ~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~----~~v~~S~DgG~tW~~~~~~---p~~~~~~~~~~~~~~~l~~~ 260 (737)
T 2cn3_A 188 TKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKN----ESIYRSTDGGVTWKAVPGQ---PKGLLPHHGVLASNGMLYIT 260 (737)
T ss_dssp TCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSS----CCEEEESSTTSCCEECTTC---CCSSEEEEEEECTTSEEEEE
T ss_pred ccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCC----ccEEEEcCCCCceEECCCC---CCcccceEEEECCCCeEEEE
Confidence 1122233321 12665321111 1244443345689988633 444444444433 7889987
Q ss_pred ecCCCC----CccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCC
Q 007111 216 GGGSRK----KRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI 273 (617)
Q Consensus 216 GG~s~~----~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~ 273 (617)
.+.... .....+|+++-...+|+.+...+...+..+.+++.+.+...+.+.||+.+..
T Consensus 261 ~~d~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~~~~~~~~~~~~~i~v~p~~~~~ly~~~~~ 322 (737)
T 2cn3_A 261 YGDTCGPYDGNGKGQVWKFNTRTGEWIDITPIPYSSSDNRFCFAGLAVDRQNPDIIMVTSMN 322 (737)
T ss_dssp EESSCCSSCCSCCEEEEEEETTTCCEEECCSSCTTSTTCCSEEEEEEECTTCTTCEEEEEEC
T ss_pred ecCCCCccccccCceEEEEeCCCCCEEEccCCCCCCcccccccccEEEcCCCCCEEEEEecc
Confidence 653211 1345689999999999998643322123355666666665566778877643
No 256
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=81.20 E-value=43 Score=32.78 Aligned_cols=141 Identities=17% Similarity=0.125 Sum_probs=72.3
Q ss_pred ceEEEEEECCCCcE-EEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCC--c-cCeEEEEECCCCcEEEeecCCCCCC
Q 007111 72 RVSVWTFDTETECW-SVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRR--K-LNDLHMFDLKSLTWLPLHCTGTGPS 147 (617)
Q Consensus 72 ~~~v~~yd~~t~~W-~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~--~-~~~v~~yD~~t~~W~~l~~~g~~P~ 147 (617)
...++++|+.+... ..+.. + .....+...+.+++.+..+.... . ...+|.+| +.++..+.. .
T Consensus 151 ~~~l~~~d~~~~~~~~~l~~----~---~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~--~--- 216 (347)
T 2gop_A 151 KTTFWIFDTESEEVIEEFEK----P---RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFE--K--- 216 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE----E---TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEE--E---
T ss_pred cceEEEEECCCCeEEeeecC----C---CcccccCCCCeEEEEEecccccccccccccEEEeC--CCceEEecc--C---
Confidence 35799999999887 66652 2 22233333333555554433211 2 45789999 777877741 1
Q ss_pred CCcccEEEEECCcEEEEEccCCC--CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccc
Q 007111 148 PRSNHVAALYDDKNLLIFGGSSK--SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHA 225 (617)
Q Consensus 148 ~R~~h~a~~~~~~~LyV~GG~~~--~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~ 225 (617)
.......-+++.|++.+.... ......++.+| ++.+..+... ..........+.+.+|+.+...+ ..
T Consensus 217 --~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~----~~~~~~~~~~~sdg~~~~~~~~~---~~ 285 (347)
T 2gop_A 217 --VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE----VDRGVGQAKIKDGKVYFTLFEEG---SV 285 (347)
T ss_dssp --ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT----CCSEEEEEEEETTEEEEEEEETT---EE
T ss_pred --cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc----CCcccCCccEEcCcEEEEEecCC---cE
Confidence 112222446664544443221 22346799999 6677665432 11222221223244666655433 24
Q ss_pred eEEEEECCCCcEEEe
Q 007111 226 ETLIFDILKGEWSVA 240 (617)
Q Consensus 226 ~v~~yDl~~~~W~~l 240 (617)
.+| ++ +.....+
T Consensus 286 ~l~-~~--~g~~~~~ 297 (347)
T 2gop_A 286 NLY-IW--DGEIKPI 297 (347)
T ss_dssp EEE-EE--SSSEEEE
T ss_pred EEE-Ec--CCceEEE
Confidence 577 77 3444443
No 257
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=80.84 E-value=1.1 Score=28.77 Aligned_cols=21 Identities=43% Similarity=0.604 Sum_probs=18.9
Q ss_pred chhhhHHHHHHHHHHHHHhhh
Q 007111 554 RLEHDVAFLKAVLDDTQKELH 574 (617)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~ 574 (617)
|||.||.-|.+|..++||-|+
T Consensus 3 rlee~~r~l~~ivq~lq~r~d 23 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLD 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998664
No 258
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=80.77 E-value=54 Score=33.64 Aligned_cols=122 Identities=11% Similarity=0.062 Sum_probs=61.6
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEE-ECCEEEEEeecCC---CCCccCeEEEEEC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDG---KRRKLNDLHMFDL 131 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~-~~~~IYv~GG~~~---~~~~~~~v~~yD~ 131 (617)
+..+|+.-+.... ....+++||+.+.+-. . .+|.....+.+.. .+..+|+..-... .+...+.+.+||+
T Consensus 32 ~~~~yv~~~~~~~--~~~~v~v~D~~t~~~~--~---~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 32 GRRSYINLPAHHS--AIIQQWVLDAGSGSIL--G---HVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred CCEEEEeCCcccC--CccEEEEEECCCCeEE--E---EecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 4568887541111 1117999999887643 2 2333333322222 3457888753211 1223577999999
Q ss_pred CCCcE-EEeecCCC-CC-CCCcccEEEE-ECCcEEEEEccCCCCCCCCeEEEEECCCCcEEE
Q 007111 132 KSLTW-LPLHCTGT-GP-SPRSNHVAAL-YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR 189 (617)
Q Consensus 132 ~t~~W-~~l~~~g~-~P-~~R~~h~a~~-~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~ 189 (617)
.+.+- ..++..+. .+ ....-+..++ -+++++|+..-.. .+.|.++| .+++-..
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~----~~~v~viD-~t~~~~~ 161 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA----GPAVGLVV-QGGSSDD 161 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCC----CCeEEEEE-CCCCEEe
Confidence 87653 23321100 00 0011112233 3566678764221 25699999 8876543
No 259
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=80.31 E-value=67 Score=34.45 Aligned_cols=101 Identities=18% Similarity=0.265 Sum_probs=56.2
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCc--E-EEeecc-CCCCCCcceeEEEE-----ECCEEEEEeecCCCCCccCeE
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETEC--W-SVVEAK-GDIPVARSGHTVVR-----ASSVLILFGGEDGKRRKLNDL 126 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W-~~~~~~-g~~P~~R~~~s~~~-----~~~~IYv~GG~~~~~~~~~~v 126 (617)
.+++|+|=|. .+|+|+-..-. + +.+... ..+| ....++... .++.+|+|-| +..
T Consensus 107 ~g~~yfFkG~--------~yW~~~~~~~~~GYPk~I~~~fpGlp-~~IDAA~~~~~~~~~~~~~yfFkG--------~~y 169 (460)
T 1qhu_A 107 HTSVYLIKGD--------KVWVYTSEKNEKVYPKSLQDEFPGIP-FPLDAAVECHRGECQDEGILFFQG--------NRK 169 (460)
T ss_dssp TTEEEEEETT--------EEEEECC-------CEEHHHHSTTCC-SSCCEEEEECBBTBSSSEEEEEET--------TEE
T ss_pred CCcEEEEecc--------EEEEEeCCcccCCCCeEhhhccCCCC-CCeeEEEECCccCCCCCeEEEEec--------ccE
Confidence 5899999774 58888643211 0 112111 1233 233433322 2578888865 357
Q ss_pred EEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCC
Q 007111 127 HMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM 185 (617)
Q Consensus 127 ~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~ 185 (617)
|+||..+.+...-. -..+|. . -++....++ +|+|-|. ..|+||..+.
T Consensus 170 w~yd~~~~~~~~~~-w~gi~~--i-DAA~~~~g~-~YfFkG~-------~y~rfd~~~~ 216 (460)
T 1qhu_A 170 WFWDLTTGTKKERS-WPAVGN--C-TSALRWLGR-YYCFQGN-------QFLRFNPVSG 216 (460)
T ss_dssp EEEETTTTEEEEEC-CTTSCC--C-SEEEEETTE-EEEEETT-------EEEEECTTTC
T ss_pred EEEecccceeeccc-CCCCCc--c-chheeeCCc-eEEEECC-------EEEEEcCccC
Confidence 99999887665321 112332 2 344445666 8999885 4788887654
No 260
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=80.03 E-value=47 Score=32.50 Aligned_cols=145 Identities=14% Similarity=0.077 Sum_probs=76.4
Q ss_pred ceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCC----------------CC-----CccCeEEEE
Q 007111 72 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDG----------------KR-----RKLNDLHMF 129 (617)
Q Consensus 72 ~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~----------------~~-----~~~~~v~~y 129 (617)
...+|++|+.+.....+.. .+. ....... +++.++++.... .+ .....++++
T Consensus 84 ~~~l~~~~~~~g~~~~l~~---~~~---~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 157 (347)
T 2gop_A 84 VSEIWVADLETLSSKKILE---AKN---IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIF 157 (347)
T ss_dssp EEEEEEEETTTTEEEEEEE---ESE---EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEE
T ss_pred cceEEEEECCCCceEEEEc---CCC---ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEE
Confidence 3579999999888766652 222 2222222 444333433210 00 113679999
Q ss_pred ECCCCcE-EEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCC---C-CCeEEEEECCCCcEEEeecCCCCCCCCcceE
Q 007111 130 DLKSLTW-LPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK---T-LNDLYSLDFETMIWTRIKIRGFHPSPRAGCC 204 (617)
Q Consensus 130 D~~t~~W-~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~---~-~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha 204 (617)
|+.+... ..+.. + .....+...+. +++.+..+... . ...+|.+| ++.+..+... .. ...
T Consensus 158 d~~~~~~~~~l~~----~---~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-----~~-~~~ 221 (347)
T 2gop_A 158 DTESEEVIEEFEK----P---RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-----VS-FYA 221 (347)
T ss_dssp ETTTTEEEEEEEE----E---TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-----ES-EEE
T ss_pred ECCCCeEEeeecC----C---CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC-----cc-eee
Confidence 9999887 66642 2 22344455666 65555443221 2 45799999 7777766431 11 122
Q ss_pred EEEECCE-EEEEecCCC--CCccceEEEEECCCCcEEEee
Q 007111 205 GVLCGTK-WYIAGGGSR--KKRHAETLIFDILKGEWSVAI 241 (617)
Q Consensus 205 ~v~~~~~-IyI~GG~s~--~~~~~~v~~yDl~~~~W~~l~ 241 (617)
. .-+++ |++.+.... ......+|.+| +..+..+.
T Consensus 222 ~-spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~ 258 (347)
T 2gop_A 222 V-DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL 258 (347)
T ss_dssp E-EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS
T ss_pred E-CCCCCEEEEEEccccCCccccceEEEEC--CCceEecc
Confidence 2 33444 544443221 11245799999 56666553
No 261
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=79.98 E-value=35 Score=36.57 Aligned_cols=156 Identities=10% Similarity=-0.023 Sum_probs=84.0
Q ss_pred eEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCC---CCCCcceeEEEE-ECCEEEEEeecCCCCCccCe
Q 007111 50 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD---IPVARSGHTVVR-ASSVLILFGGEDGKRRKLND 125 (617)
Q Consensus 50 hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~---~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~ 125 (617)
-+++.+.+++|+|-|. .+|+++.....+.......- +|. ...++... .++.+|+|=| +.
T Consensus 266 DAi~~~~ge~y~Fkg~--------~~wr~~~~~~~~~p~~I~~~Wp~LP~-~iDAa~~~~~~g~~~fFKg--------~~ 328 (450)
T 1su3_A 266 DAITTIRGEVMFFKDR--------FYMRTNPFYPEVELNFISVFWPQLPN-GLEAAYEFADRDEVRFFKG--------NK 328 (450)
T ss_dssp SEEEEETTEEEEEETT--------EEEECCTTSSSCEEEEGGGTCTTSCS-SCCEEEEEGGGTEEEEEET--------TE
T ss_pred ceEEecCCeEEEEeCC--------EEEEEcCCCCcccceehhHhccCCCC-CeeEEEEEcCCCeEEEEeC--------CE
Confidence 4666789999999775 48888876655544333222 232 23333222 2689999844 35
Q ss_pred EEEEECCCC--cE-EEeecCCCCCC--CCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEE-----ee-cC
Q 007111 126 LHMFDLKSL--TW-LPLHCTGTGPS--PRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-----IK-IR 193 (617)
Q Consensus 126 v~~yD~~t~--~W-~~l~~~g~~P~--~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~-----~~-~~ 193 (617)
+|+|+..+- .+ ..+...-.+|. .... ++... .+..+|+|=| +..|+||..+.+-.. +. ..
T Consensus 329 ~W~~~~~~~~~gyP~~i~~~~g~P~~~~~ID-AA~~~~~~~k~yfFkG-------~~yw~yd~~~~~~~~gYPk~I~~~f 400 (450)
T 1su3_A 329 YWAVQGQNVLHGYPKDIYSSFGFPRTVKHID-AALSEENTGKTYFFVA-------NKYWRYDEYKRSMDPGYPKMIAHDF 400 (450)
T ss_dssp EEEEETTEECTTCSEEHHHHHCCCTTCCCCC-EEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCSEEHHHHS
T ss_pred EEEecCCcccCCCceeeehhhcCCCCCCccc-eEEEEcCCCeEEEEeC-------CEEEEEeCCCccccCCCCcchhhcC
Confidence 777764321 00 11110001232 1222 33333 2334899877 359999986543221 11 01
Q ss_pred CCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEE
Q 007111 194 GFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 239 (617)
Q Consensus 194 g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~ 239 (617)
+-.| ..-.++...++++|+|-| +..|+||..+.+-..
T Consensus 401 pgip--~~iDAA~~~~g~~YFFkg-------~~ywr~d~~~~~v~~ 437 (450)
T 1su3_A 401 PGIG--HKVDAVFMKDGFFYFFHG-------TRQYKFDPKTKRILT 437 (450)
T ss_dssp TTSC--SCCSEEEEETTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred CCCC--CCccEEEEcCCeEEEEeC-------CEEEEEECCcceEec
Confidence 1122 222344556899999987 458999988776544
No 262
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=79.80 E-value=48 Score=32.49 Aligned_cols=146 Identities=10% Similarity=0.103 Sum_probs=75.0
Q ss_pred CCEEEEEeecCCCCCccCeEEEEECCCCcEE-EeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCC
Q 007111 107 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWL-PLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM 185 (617)
Q Consensus 107 ~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~-~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~ 185 (617)
++.+++.|+.+. .+.+||+.+.+-. .+. +. . ..-.++....+..+++.|+.++. +.+||+...
T Consensus 76 dg~~l~s~s~D~------~v~~wd~~~~~~~~~~~--~h--~-~~v~~~~~~~~~~~l~s~s~D~~-----i~vwd~~~~ 139 (319)
T 3frx_A 76 DGAYALSASWDK------TLRLWDVATGETYQRFV--GH--K-SDVMSVDIDKKASMIISGSRDKT-----IKVWTIKGQ 139 (319)
T ss_dssp TSSEEEEEETTS------EEEEEETTTTEEEEEEE--CC--S-SCEEEEEECTTSCEEEEEETTSC-----EEEEETTSC
T ss_pred CCCEEEEEeCCC------EEEEEECCCCCeeEEEc--cC--C-CcEEEEEEcCCCCEEEEEeCCCe-----EEEEECCCC
Confidence 456777777543 4889999887643 221 11 0 01112223233337788887754 888898765
Q ss_pred cEEEeecCCCCCCCCcceEEEEE-------CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEE
Q 007111 186 IWTRIKIRGFHPSPRAGCCGVLC-------GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVL 258 (617)
Q Consensus 186 ~W~~~~~~g~~P~~R~~ha~v~~-------~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~ 258 (617)
.-..+... ...-.++... ++..++.||..+ .+.++|+.+..-..... . .......+.
T Consensus 140 ~~~~~~~h-----~~~v~~~~~~~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~~~-~-----h~~~v~~~~ 203 (319)
T 3frx_A 140 CLATLLGH-----NDWVSQVRVVPNEKADDDSVTIISAGNDK-----MVKAWNLNQFQIEADFI-G-----HNSNINTLT 203 (319)
T ss_dssp EEEEECCC-----SSCEEEEEECCC------CCEEEEEETTS-----CEEEEETTTTEEEEEEC-C-----CCSCEEEEE
T ss_pred eEEEEecc-----CCcEEEEEEccCCCCCCCccEEEEEeCCC-----EEEEEECCcchhheeec-C-----CCCcEEEEE
Confidence 44333211 1111122222 223556666543 47888887765433210 0 111223333
Q ss_pred EeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 259 VQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 259 v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
+.. ++.+++.||.++ .|.+||+.+.+
T Consensus 204 ~sp--~g~~l~s~~~dg----~i~iwd~~~~~ 229 (319)
T 3frx_A 204 ASP--DGTLIASAGKDG----EIMLWNLAAKK 229 (319)
T ss_dssp ECT--TSSEEEEEETTC----EEEEEETTTTE
T ss_pred EcC--CCCEEEEEeCCC----eEEEEECCCCc
Confidence 332 345677787654 68888887654
No 263
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=79.75 E-value=55 Score=33.12 Aligned_cols=122 Identities=11% Similarity=0.131 Sum_probs=61.2
Q ss_pred CEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCC---CCCccCeEEEEEC
Q 007111 57 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDG---KRRKLNDLHMFDL 131 (617)
Q Consensus 57 ~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~---~~~~~~~v~~yD~ 131 (617)
.++||.-.... ...-..+++||+.+.+-... +|..... .++.- +..+|+..-... .+...+.+.+||+
T Consensus 16 ~~~yv~~~~~~-~~~d~~v~v~D~~t~~~~~~-----i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 16 NRIYVMDSVFM-HLTESRVHVYDYTNGKFLGM-----VPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp GEEEEEECCGG-GGGGCEEEEEETTTCCEEEE-----EECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred CEEEEECCCCC-ccccCeEEEEECCCCeEEEE-----ecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEEC
Confidence 45676642211 11124799999888765322 2222233 22222 457888753211 1223467999999
Q ss_pred CCCcE-EEeecCCCCC-CCCcccEEEE-ECCcEEEEEccCCCCCCCCeEEEEECCCCcEEE
Q 007111 132 KSLTW-LPLHCTGTGP-SPRSNHVAAL-YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR 189 (617)
Q Consensus 132 ~t~~W-~~l~~~g~~P-~~R~~h~a~~-~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~ 189 (617)
.+.+- ..++..+... ....-+.+++ -+++++|+..... .+.+.+||+.+++-..
T Consensus 89 ~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~----~~~v~v~d~~~~~~~~ 145 (361)
T 2oiz_A 89 DKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASP----ATSIGIVDVAKGDYVE 145 (361)
T ss_dssp TTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESS----SEEEEEEETTTTEEEE
T ss_pred cCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCC----CCeEEEEECCCCcEEE
Confidence 87653 3332111000 0111223333 3566688764321 2568999998875543
No 264
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=79.65 E-value=36 Score=33.26 Aligned_cols=105 Identities=10% Similarity=0.042 Sum_probs=53.6
Q ss_pred ceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CC-EEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCC
Q 007111 72 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR 149 (617)
Q Consensus 72 ~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~-~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R 149 (617)
...+++||+.+.++..+. ... ....++.. ++ .||+....... ...+.+++||+..............+...
T Consensus 168 ~~~v~~~d~~~g~~~~~~-~~~-----~p~gl~~spdg~~lyv~~~~~~~-~~~~~i~~~~~~~~~l~~~~~~~~~~~~~ 240 (305)
T 3dr2_A 168 HHSVYRLPPDGSPLQRMA-DLD-----HPNGLAFSPDEQTLYVSQTPEQG-HGSVEITAFAWRDGALHDRRHFASVPDGL 240 (305)
T ss_dssp CEEEEEECSSSCCCEEEE-EES-----SEEEEEECTTSSEEEEEECCC----CCCEEEEEEEETTEEEEEEEEECCSSSC
T ss_pred CCeEEEEcCCCCcEEEEe-cCC-----CCcceEEcCCCCEEEEEecCCcC-CCCCEEEEEEecCCCccCCeEEEECCCCC
Confidence 357999999888877654 111 11233333 33 57776432211 11367999998765432211111111111
Q ss_pred cccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeec
Q 007111 150 SNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 192 (617)
Q Consensus 150 ~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~ 192 (617)
-..+++- +++ ||+..+ +.|++||+.......+..
T Consensus 241 -pdgi~~d~~G~-lwv~~~-------~gv~~~~~~g~~~~~~~~ 275 (305)
T 3dr2_A 241 -PDGFCVDRGGW-LWSSSG-------TGVCVFDSDGQLLGHIPT 275 (305)
T ss_dssp -CCSEEECTTSC-EEECCS-------SEEEEECTTSCEEEEEEC
T ss_pred -CCeEEECCCCC-EEEecC-------CcEEEECCCCCEEEEEEC
Confidence 1123333 345 777542 249999997665555543
No 265
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=78.54 E-value=22 Score=33.55 Aligned_cols=100 Identities=15% Similarity=0.133 Sum_probs=60.3
Q ss_pred CCCchHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHH----hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 007111 462 SGPSSIYQFYESKMAALIRKNGILEGQLAAALVNREAA----EKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELA 537 (617)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~ 537 (617)
+|..+-..+|+.+...+..+...|+..|++=..+=-+. |+.|.-.=+.-.+|..+++....|.+.+|.|+...
T Consensus 6 ~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~--- 82 (189)
T 2v71_A 6 SSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQ--- 82 (189)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 35567778899988888888888888887766554333 33444444444556666666666777777776433
Q ss_pred HHhhhcccccccCCCcchhhhHHHHHHHHHHHHH
Q 007111 538 QEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQK 571 (617)
Q Consensus 538 qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (617)
+-|+|+.-| .|+.+++-|+...+.+++
T Consensus 83 ~~e~~~~~~-------~Lq~el~~l~~~~~~l~~ 109 (189)
T 2v71_A 83 YAQSYKQVS-------VLEDDLSQTRAIKEQLHK 109 (189)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 334333222 345555555555554444
No 266
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=77.96 E-value=26 Score=38.68 Aligned_cols=111 Identities=14% Similarity=0.002 Sum_probs=56.3
Q ss_pred EEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCC---CccCeEEEEECCCCcEEEeecCCCCCCCCc
Q 007111 74 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKR---RKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 150 (617)
Q Consensus 74 ~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~---~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~ 150 (617)
.++++|+.+.+-..+-................-+++.++++..+... .+...++++|+.+.+...+... .....+.
T Consensus 38 ~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~~~ 116 (723)
T 1xfd_A 38 TVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPP-EVSNAKL 116 (723)
T ss_dssp CEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCT-TCCSCCC
T ss_pred CEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCC-ccccccc
Confidence 58888888876544431111100011112222356656665543321 1347899999998876655311 1111111
Q ss_pred ccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeec
Q 007111 151 NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 192 (617)
Q Consensus 151 ~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~ 192 (617)
...+..-+++ .++++.. +.++++|..++....+..
T Consensus 117 ~~~~~SPdG~-~la~~~~------~~i~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 117 QYAGWGPKGQ-QLIFIFE------NNIYYCAHVGKQAIRVVS 151 (723)
T ss_dssp SBCCBCSSTT-CEEEEET------TEEEEESSSSSCCEEEEC
T ss_pred cccEECCCCC-EEEEEEC------CeEEEEECCCCceEEEec
Confidence 1222223555 3344332 369999998887766644
No 267
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=77.80 E-value=7.4 Score=29.96 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=37.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHH
Q 007111 500 EKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDD 568 (617)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (617)
+.|-..+.++||.-..+..+...+.+.|+.+-..|+.-= -.|+.|+++||.+|.|
T Consensus 8 ~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i--------------~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 8 EQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERA--------------DSLAKEIQYLKDLIEE 62 (63)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhh
Confidence 345556678888777777777777777777666665221 2467889999988865
No 268
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=77.58 E-value=38 Score=31.80 Aligned_cols=153 Identities=14% Similarity=0.173 Sum_probs=80.3
Q ss_pred EEEEECCEEEEEcccCCCCCCceEEEEEECCC---CcEEEeeccC-CCCCCcceeEEEEECCEEEEEeecCCCCCccCeE
Q 007111 51 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTET---ECWSVVEAKG-DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDL 126 (617)
Q Consensus 51 s~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t---~~W~~~~~~g-~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v 126 (617)
+++...+++|+|-|. .+|+++... .-=..+.... .+|. ...++....++++|+|-| +.+
T Consensus 10 A~~~~~g~~~fFkg~--------~~w~~~~~~~~~gyP~~I~~~w~glP~-~iDAa~~~~~g~~yfFkg--------~~y 72 (196)
T 3c7x_A 10 TVAMLRGEMFVFKER--------WFWRVRNNQVMDGYPMPIGQFWRGLPA-SINTAYERKDGKFVFFKG--------DKH 72 (196)
T ss_dssp EEEEETTEEEEEETT--------EEEEEETTEECTTCSEEHHHHSTTCCS-SCCEEEECTTSCEEEEET--------TEE
T ss_pred EEEEcCCEEEEEECC--------EEEEEECCccCCCCceEhhHhccCCCC-CccEEEEeCCCcEEEecC--------CEE
Confidence 455779999999775 588886431 0011221111 2443 444443334678998854 457
Q ss_pred EEEECCCCcE---EEeecCC-CCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEE-----eecCCCCC
Q 007111 127 HMFDLKSLTW---LPLHCTG-TGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-----IKIRGFHP 197 (617)
Q Consensus 127 ~~yD~~t~~W---~~l~~~g-~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~-----~~~~g~~P 197 (617)
|+|+..+... ..+...+ .+|......+.....+..+|+|-|. ..|+||..+++-.. +..-+-+|
T Consensus 73 w~~~~~~~~~gyPk~I~~~~~glP~~~IDAA~~~~~~g~~yfFkG~-------~yw~yd~~~~~v~~gyPk~i~~~~gip 145 (196)
T 3c7x_A 73 WVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRGN-------KYYRFNEELRAVDSEYPKNIKVWEGIP 145 (196)
T ss_dssp EEEETTEECTTCSEEGGGTCBSCCSSCCSEEEEETTTTEEEEEETT-------EEEEEETTTTEECTTCSEEGGGSBTCC
T ss_pred EEEeCCcccCCCCeEhhhcCCCCCCCcccEEEEEccCCEEEEEECC-------EEEEEeCCcccccCCCCccHHHCCCcC
Confidence 8887542110 1221111 2443333333322233348999774 48999987654321 11111112
Q ss_pred CCCcceEEEEE-CC-EEEEEecCCCCCccceEEEEECCCCc
Q 007111 198 SPRAGCCGVLC-GT-KWYIAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 198 ~~R~~ha~v~~-~~-~IyI~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
..-.++... ++ ++|++-| +..|+||..+.+
T Consensus 146 --~~idaAf~~~~~~~~YfFkg-------~~y~r~d~~~~~ 177 (196)
T 3c7x_A 146 --ESPRGSFMGSDEVFTYFYKG-------NKYWKFNNQKLK 177 (196)
T ss_dssp --SSCSEEEECTTSSEEEEEET-------TEEEEEETTTTE
T ss_pred --CCcceeEEecCCCEEEEEEC-------CEEEEEECCcce
Confidence 222344444 44 8999977 458999987754
No 269
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=77.57 E-value=89 Score=34.30 Aligned_cols=107 Identities=19% Similarity=0.170 Sum_probs=56.7
Q ss_pred eEEEEECCCCc--EEEccccccCCCCCCCCCCCcc--cceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEe
Q 007111 15 DVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPAC--RGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVV 88 (617)
Q Consensus 15 ~v~~yd~~t~~--W~~l~~~~~~~p~~~~~~~p~r--~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~ 88 (617)
.++++|..+.+ |+.-..... ...+.+ ...+.+..+++||+... ...++.+|..+.+ |+.-
T Consensus 79 ~v~AlD~~tG~~~W~~~~~~~~-------~~~~~~~~~~~g~a~~~~~v~~~t~-------dg~l~AlD~~TG~~~W~~~ 144 (582)
T 1flg_A 79 RLFALDAKTGKRLWTYNHRLPD-------DIRPCCDVVNRGAAIYGDKVFFGTL-------DASVVALNKNTGKVVWKKK 144 (582)
T ss_dssp EEEEEESSSCCEEEEEECCCCT-------TCCCSSCSCCCCCEEETTEEEEEET-------TTEEEEEESSSCCEEEEEE
T ss_pred CEEEEECCCCcEEEEEcCCCCc-------ccccccccCCCccEEECCEEEEEeC-------CCEEEEEECCCCCEEeeec
Confidence 49999987665 976543110 000111 01233457889987532 1369999998875 8764
Q ss_pred eccCCCCCCc--ceeEEEEECC------EEEEEeecCCCCCccCeEEEEECCCCc--EEEe
Q 007111 89 EAKGDIPVAR--SGHTVVRASS------VLILFGGEDGKRRKLNDLHMFDLKSLT--WLPL 139 (617)
Q Consensus 89 ~~~g~~P~~R--~~~s~~~~~~------~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l 139 (617)
.. .+... ...+-++.++ .||+ |...........++.||+.+.+ |+.-
T Consensus 145 ~~---~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e~~~~g~v~alD~~tG~~~W~~~ 201 (582)
T 1flg_A 145 FA---DHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGDEFGVVGRLFARDPDTGEEIWMRP 201 (582)
T ss_dssp CS---CGGGTCBCCSCCEEEECTTTCCEEEEE-CCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred CC---CCCcCcccccCCEEeCCCcCCcEEEEE-eccccccCCCCEEEEEECCCCCEEeecC
Confidence 31 11111 1112233444 5554 4322111134679999999875 9753
No 270
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=77.54 E-value=14 Score=29.74 Aligned_cols=69 Identities=16% Similarity=0.126 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELA 537 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~ 537 (617)
+..+.+.-.+.-+...++.+|.++-...+++|..+.++-+-.|.+|..|..+.......-.||..++.+
T Consensus 9 ~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~ 77 (81)
T 1ic2_A 9 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKK 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666777777777777777777777776667777766666666665555555555543
No 271
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=77.48 E-value=56 Score=31.97 Aligned_cols=189 Identities=8% Similarity=-0.030 Sum_probs=93.9
Q ss_pred eEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEE
Q 007111 50 HSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLH 127 (617)
Q Consensus 50 hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~ 127 (617)
++++.. ++++||...... ...+++||+.+.+...+. ..+..+.....+.. ++.+|+..- ....+|
T Consensus 75 ~gia~~~dG~l~vad~~~~----~~~v~~~d~~~g~~~~~~---~~~~~~~~~g~~~~~~~~~~v~d~------~~g~i~ 141 (306)
T 2p4o_A 75 SGLAFTSNGDLVATGWNAD----SIPVVSLVKSDGTVETLL---TLPDAIFLNGITPLSDTQYLTADS------YRGAIW 141 (306)
T ss_dssp EEEEECTTSCEEEEEECTT----SCEEEEEECTTSCEEEEE---ECTTCSCEEEEEESSSSEEEEEET------TTTEEE
T ss_pred eeEEEcCCCcEEEEeccCC----cceEEEEcCCCCeEEEEE---eCCCccccCcccccCCCcEEEEEC------CCCeEE
Confidence 444443 567888753211 125889999888887765 23444444444433 456777531 135799
Q ss_pred EEECCCCc---EEEeec-CCCCCC-CCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCC-CcE---EEeecCCCCCC
Q 007111 128 MFDLKSLT---WLPLHC-TGTGPS-PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET-MIW---TRIKIRGFHPS 198 (617)
Q Consensus 128 ~yD~~t~~---W~~l~~-~g~~P~-~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t-~~W---~~~~~~g~~P~ 198 (617)
++|+.+.. |..-.. ....+. ..........+++.||+.--. .+.|++||+.. +.. ..+... ..
T Consensus 142 ~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~-----~~~I~~~~~~~~g~~~~~~~~~~~---~~ 213 (306)
T 2p4o_A 142 LIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTE-----KMLLLRIPVDSTDKPGEPEIFVEQ---TN 213 (306)
T ss_dssp EEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETT-----TTEEEEEEBCTTSCBCCCEEEEES---CC
T ss_pred EEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCC-----CCEEEEEEeCCCCCCCccEEEecc---CC
Confidence 99998652 221100 000111 111112224455558876432 35699999864 222 111111 12
Q ss_pred CCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEee--cCCcEEEEEcC
Q 007111 199 PRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQH--KEKDFLVAFGG 272 (617)
Q Consensus 199 ~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~--~~~~~L~I~GG 272 (617)
|+ .++.. ++++|+.-... +.+.+||+. .+...+...+ .+.....++.+.. .+.+.|||.-.
T Consensus 214 P~---gi~vd~dG~l~va~~~~-----~~V~~~~~~-G~~~~~~~~~----~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 214 ID---DFAFDVEGNLYGATHIY-----NSVVRIAPD-RSTTIIAQAE----QGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp CS---SEEEBTTCCEEEECBTT-----CCEEEECTT-CCEEEEECGG----GTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred CC---CeEECCCCCEEEEeCCC-----CeEEEECCC-CCEEEEeecc----cccCCceEEEEecccCCCCEEEEECC
Confidence 22 22333 67888875432 458899986 4443332111 1112344455542 33466776543
No 272
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=77.23 E-value=1.2e+02 Score=35.53 Aligned_cols=194 Identities=12% Similarity=0.072 Sum_probs=101.2
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 93 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~ 93 (617)
.+++.++........+... +.........-+++.++++...........+|++|..+..-..+..
T Consensus 33 ~~l~~~~~~gg~~~~lt~~------------~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~--- 97 (1045)
T 1k32_A 33 DDLWEHDLKSGSTRKIVSN------------LGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITY--- 97 (1045)
T ss_dssp TEEEEEETTTCCEEEEECS------------SSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCC---
T ss_pred CcEEEEECCCCcEEEeeeC------------CCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEccc---
Confidence 3688888887776666531 1111112222256655555432111123579999999887555541
Q ss_pred CCCC---cc-eeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEcc
Q 007111 94 IPVA---RS-GHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGG 167 (617)
Q Consensus 94 ~P~~---R~-~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG 167 (617)
.+.. |. ......+ ++++++.++.+........+|.+|+.+.....+. ..+. ...+... . +++.|.
T Consensus 98 ~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~---~~~~----~~~~~sp-G-~l~~~~ 168 (1045)
T 1k32_A 98 FSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN---LGPA----THILFAD-G-RRVIGR 168 (1045)
T ss_dssp CCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC---SCSC----SEEEEET-T-EEEEEE
T ss_pred CCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEec---CCCc----ceeeeCC-C-EEEEec
Confidence 1111 10 1122222 5666666655433223467999999888877663 1111 1223334 3 445543
Q ss_pred CCC---------CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEE
Q 007111 168 SSK---------SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWS 238 (617)
Q Consensus 168 ~~~---------~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~ 238 (617)
.+. ......+|.++.. +....+... .......+..++.+++.++..+ ...+|.+++......
T Consensus 169 ~~~~~~~~~~~~g~~~~~lw~~~~~-~~~~~l~~~-----~~~v~~~~~s~d~l~~~~~~dg---~~~l~~~~~~g~~~~ 239 (1045)
T 1k32_A 169 NTFELPHWKGYRGGTRGKIWIEVNS-GAFKKIVDM-----STHVSSPVIVGHRIYFITDIDG---FGQIYSTDLDGKDLR 239 (1045)
T ss_dssp SCSCCTTSTTCCSTTCCEEEEEEET-TEEEEEECC-----SSCCEEEEEETTEEEEEECTTS---SCEEEEEETTSCSCE
T ss_pred cCCCccccccccCCCcCCEEEECCC-CCeEECcCC-----CCcccceEEeCCEEEEEEeccC---ceEEEEEeCCCCcce
Confidence 211 1234567777655 667666321 2222344445777777765432 246888888766555
Q ss_pred Ee
Q 007111 239 VA 240 (617)
Q Consensus 239 ~l 240 (617)
.+
T Consensus 240 ~l 241 (1045)
T 1k32_A 240 KH 241 (1045)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 273
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=77.23 E-value=9.8 Score=34.09 Aligned_cols=62 Identities=8% Similarity=0.072 Sum_probs=35.7
Q ss_pred HHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHh
Q 007111 479 IRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEE 540 (617)
Q Consensus 479 ~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~ 540 (617)
-++...|+.++++--......-..|.+.-.-.+++++++++..++...|.++++.+|-..++
T Consensus 74 ~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 74 KKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666665444444444554444445556666666666666666666666655444
No 274
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=76.88 E-value=80 Score=33.39 Aligned_cols=122 Identities=13% Similarity=0.095 Sum_probs=64.4
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcce-eEEEEECCEEEEEeec---CCCCCccCeEEEEEC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSG-HTVVRASSVLILFGGE---DGKRRKLNDLHMFDL 131 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~-~s~~~~~~~IYv~GG~---~~~~~~~~~v~~yD~ 131 (617)
+.++||.-...... .+.+.++|+.+.+-...- |..... .+....+..+|+.--. ...+...+.+.++|+
T Consensus 84 ~~~vyV~n~~~~~~--~~~VsVID~~t~~vv~~I-----~vG~~Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 84 ARRVYIQDPAHFAA--ITQQFVIDGSTGRILGMT-----DGGFLPHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp TTEEEEEECTTTCS--SEEEEEEETTTTEEEEEE-----EECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCEEEEECCCcCCC--CCeEEEEECCCCEEEEEE-----ECCCCCceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 56788885431111 178999999988743322 222222 2222234578876421 111122467999999
Q ss_pred CCCcEE-EeecCCCCC--CCCcccEEEE-ECCcEEEEEccCCCCCCCCeEEEEECCCCcEE
Q 007111 132 KSLTWL-PLHCTGTGP--SPRSNHVAAL-YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWT 188 (617)
Q Consensus 132 ~t~~W~-~l~~~g~~P--~~R~~h~a~~-~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~ 188 (617)
.+++-. .+...+... ....-+.+++ -+++++|+..-. ..+.|.++|+.+++-.
T Consensus 157 ~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~----~~~~VsVID~~t~kvv 213 (426)
T 3c75_H 157 VTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS----PAPAVGVVDLEGKTFD 213 (426)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS----SSCEEEEEETTTTEEE
T ss_pred CCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC----CCCeEEEEECCCCeEE
Confidence 998743 332110000 0111223333 366678887421 1356999999887654
No 275
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=76.50 E-value=62 Score=31.95 Aligned_cols=162 Identities=10% Similarity=0.039 Sum_probs=88.4
Q ss_pred EEEEE--CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCC----C-CCcceeEEEEE-C-CEEEEEeecCCCCC
Q 007111 51 SLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDI----P-VARSGHTVVRA-S-SVLILFGGEDGKRR 121 (617)
Q Consensus 51 s~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~----P-~~R~~~s~~~~-~-~~IYv~GG~~~~~~ 121 (617)
.++.. ++.+||..++. ...+.+||+.......+...+.. + .....+.++.. + +.||+....
T Consensus 147 ~ia~~~~~g~lyv~d~~~-----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~----- 216 (329)
T 3fvz_A 147 DVAVEPSTGAVFVSDGYC-----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE----- 216 (329)
T ss_dssp EEEECTTTCCEEEEECSS-----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT-----
T ss_pred EEEEeCCCCeEEEEeCCC-----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC-----
Confidence 44444 57899997531 24699999665544444332221 1 11224455554 3 799988532
Q ss_pred ccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCC--CCCCCeEEEEECCCCcEEEeecCCCCCCC
Q 007111 122 KLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK--SKTLNDLYSLDFETMIWTRIKIRGFHPSP 199 (617)
Q Consensus 122 ~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~--~~~~n~v~~yD~~t~~W~~~~~~g~~P~~ 199 (617)
.+.+.+||+.+.+....-. .......-...+... ..+|+..|... ......+++||+.+++........ +..
T Consensus 217 -~~~I~~~~~~~G~~~~~~~--~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~--~~~ 290 (329)
T 3fvz_A 217 -NGRIQCFKTDTKEFVREIK--HASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV--RKH 290 (329)
T ss_dssp -TTEEEEEETTTCCEEEEEC--CTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS--SSC
T ss_pred -CCEEEEEECCCCcEEEEEe--ccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC--CCc
Confidence 3569999998777654321 111111122333344 43677666532 223457999999888776553211 111
Q ss_pred Ccc-eEEEEE-CCEEEEEecCCCCCccceEEEEECC
Q 007111 200 RAG-CCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL 233 (617)
Q Consensus 200 R~~-ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~ 233 (617)
... ++++.. ++.+||....+ +.+++|++.
T Consensus 291 ~~~p~~ia~~~dG~lyvad~~~-----~~I~~~~~~ 321 (329)
T 3fvz_A 291 FDMPHDIVASEDGTVYIGDAHT-----NTVWKFTLT 321 (329)
T ss_dssp CSSEEEEEECTTSEEEEEESSS-----CCEEEEEEE
T ss_pred cCCeeEEEECCCCCEEEEECCC-----CEEEEEeCC
Confidence 222 233333 66899987544 347777754
No 276
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=76.16 E-value=97 Score=33.99 Aligned_cols=65 Identities=17% Similarity=0.069 Sum_probs=33.2
Q ss_pred CeEEEEECCCCc-EEEeecCCCCCC--CCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEee
Q 007111 124 NDLHMFDLKSLT-WLPLHCTGTGPS--PRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIK 191 (617)
Q Consensus 124 ~~v~~yD~~t~~-W~~l~~~g~~P~--~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~ 191 (617)
.+++++|+.+.+ ...+.. +..+. ..+-...+.. +++ ++++..... .....++++|+.+++...+.
T Consensus 228 ~~l~~~d~~~~~~~~~l~~-~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~-~~~~~i~~~d~~~g~~~~~~ 296 (723)
T 1xfd_A 228 ISLHVIGLNGPTHDLEMMP-PDDPRMREYYITMVKWATSTK-VAVTWLNRA-QNVSILTLCDATTGVCTKKH 296 (723)
T ss_dssp EEEEEEESSSSCCCEECCC-CCCGGGSSEEEEEEEESSSSE-EEEEEEETT-SCEEEEEEEETTTCCEEEEE
T ss_pred eEEEEEECCCCceeEEeeC-CccCCCccceeEEEEEeCCCe-EEEEEEcCC-CCeEEEEEEeCCCCcceEEE
Confidence 378999998876 344421 00010 1111122223 455 444432221 22356999999988876653
No 277
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=75.46 E-value=8.1 Score=35.34 Aligned_cols=79 Identities=24% Similarity=0.309 Sum_probs=37.5
Q ss_pred HHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhh
Q 007111 478 LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEH 557 (617)
Q Consensus 478 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~ 557 (617)
+-.+-..|..+|..|-+--|.||.++.-+=++...+|.+|.........+.+.|. .+--+.++ +.+++--|++
T Consensus 75 yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd---~tl~el~~----~~~~~~~~~~ 147 (155)
T 2efr_A 75 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMK---QLEDKVEE----LLSKNYHLEN 147 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHh----cccchHHHHH
Confidence 3333344555555555555556555544444444444444433222222222222 12222222 2566667777
Q ss_pred hHHHHH
Q 007111 558 DVAFLK 563 (617)
Q Consensus 558 ~~~~~~ 563 (617)
+|+-||
T Consensus 148 ~~~~~~ 153 (155)
T 2efr_A 148 EVARLK 153 (155)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 777776
No 278
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=75.29 E-value=2.3 Score=38.64 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=0.0
Q ss_pred HHHHhhcHHHHhhhhhhhhhhHH
Q 007111 489 LAAALVNREAAEKNFSSVLKSRQ 511 (617)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~ 511 (617)
|.+.|+.+...|++++.+++.-.
T Consensus 30 l~~rL~~Rd~~E~~~~~l~~e~~ 52 (152)
T 3a7p_A 30 LIRRLTDRNDKEAHLNELFQDNS 52 (152)
T ss_dssp -----------------------
T ss_pred HHHHHHHhhhHHHHHHHHHHhhc
Confidence 55666666666666666555433
No 279
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=75.25 E-value=11 Score=33.49 Aligned_cols=53 Identities=19% Similarity=0.181 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhh----------hhHHHHHHHHHHH
Q 007111 468 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVL----------KSRQEMEKKLADS 520 (617)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 520 (617)
+.+|+.+++.+-.+....+.||..|...-|-..|+-+|+| .|..+++.++-.+
T Consensus 40 q~T~E~E~q~~~~kk~~Aekql~~Ake~~eKlkKKrsSv~gs~~~aHs~~sslD~vD~~Il~A 102 (136)
T 3ter_A 40 RRTCENEMAFLEKQRQDCFKEMKEAIEMVDRLQKKQGSVLSSLKLATGAASTSDQVDSKIFAL 102 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCSSCCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHccccHHHHHHHHHHHHHHHHHhhhchheeeeeecCCCCchHHHHHHHHHH
Confidence 4699999999999999999999999888888888877764 4566666665543
No 280
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=74.73 E-value=20 Score=30.08 Aligned_cols=62 Identities=21% Similarity=0.229 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007111 472 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAG 533 (617)
Q Consensus 472 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~ 533 (617)
++||+.|.............+-+.+.++|....-+-.....+.+|+..+..+++...+.+..
T Consensus 8 KkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~ 69 (101)
T 3u59_A 8 KKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKE 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555444444444444444444444444444444444444444444444443
No 281
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=74.61 E-value=11 Score=34.40 Aligned_cols=55 Identities=20% Similarity=0.195 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhhh
Q 007111 522 KEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHST 576 (617)
Q Consensus 522 ~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (617)
..+..|++|+..+|.--|.|---.+....+.-+||.++.--|.-...++.||+.|
T Consensus 77 eqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~t 131 (155)
T 2efr_A 77 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQL 131 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445577777777766666554444455555566655544444444444444433
No 282
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=74.50 E-value=9.4 Score=32.22 Aligned_cols=72 Identities=17% Similarity=0.111 Sum_probs=49.9
Q ss_pred chHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHH----Hhhhh----------hhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007111 465 SSIYQFYESKMAALIRKNGILEGQLAAALVNREA----AEKNF----------SSVLKSRQEMEKKLADSLKEMELLKEK 530 (617)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~----~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~lkek 530 (617)
+.=+.....||..|-+++..|..+.+..-..+|. .+=|- +-+-.-+|+.+..+.....|+|.||++
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~ 90 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGL 90 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777888777777777777666666665 22111 113345677888888999999999999
Q ss_pred HhhhHH
Q 007111 531 LAGLEL 536 (617)
Q Consensus 531 ~~~~e~ 536 (617)
|..+|.
T Consensus 91 v~~lEe 96 (100)
T 1go4_E 91 LRAMER 96 (100)
T ss_dssp HTTCC-
T ss_pred HHHHhc
Confidence 999875
No 283
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=74.40 E-value=22 Score=29.89 Aligned_cols=63 Identities=19% Similarity=0.147 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007111 472 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 534 (617)
Q Consensus 472 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~ 534 (617)
++||+.|...........+.+-+.+.++|....-+=.....|.+|+..+..|++.+.++|..+
T Consensus 8 KkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 8 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443333333333333333333333333334444444444444444444433
No 284
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=74.19 E-value=2.5 Score=45.76 Aligned_cols=102 Identities=13% Similarity=0.159 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHH---------------HHHHHHHHHHHHHHHHHHH
Q 007111 466 SIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQ---------------EMEKKLADSLKEMELLKEK 530 (617)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~lkek 530 (617)
+++...+.++ .+.++...||++++.......+.+..+....+..+ +.-++..+..+++|..+++
T Consensus 354 ~~~~~~~~~~-~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (487)
T 3oja_A 354 QVTLRKQAKI-TLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNN 432 (487)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444555555 78899999999998888777666665544322211 2223333444455554444
Q ss_pred HhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhhhcc
Q 007111 531 LAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRG 578 (617)
Q Consensus 531 ~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (617)
....+ .+...+.-.|+.+-+-++-++++..+++-..+.
T Consensus 433 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
T 3oja_A 433 AIRDW----------DMYQHKETQLAEENARLKKLNGEADLALASANA 470 (487)
T ss_dssp HHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhh----------hhhhhHHHHHHHHhhhhhhhhhhhhhhhHhccc
Confidence 32222 222333334555666666666666666655543
No 285
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=74.13 E-value=14 Score=31.69 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=24.6
Q ss_pred HHHHHHhchhhHhHHHHhhcHHHHhhhhh
Q 007111 476 AALIRKNGILEGQLAAALVNREAAEKNFS 504 (617)
Q Consensus 476 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~~ 504 (617)
+.|||+++-..-||+.+.+..+.+++-..
T Consensus 4 i~LLRK~aE~~KqL~~~~q~~~e~e~~k~ 32 (107)
T 2no2_A 4 ADLLRKNAEVTKQVSMARQAQVDLEREKK 32 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999998888876433
No 286
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=73.37 E-value=17 Score=30.16 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=12.7
Q ss_pred hhhHhHHHHhhcHHHHhhh
Q 007111 484 ILEGQLAAALVNREAAEKN 502 (617)
Q Consensus 484 ~~~~q~~~~~~~~~~~~~~ 502 (617)
.|+.||+-|...+-++|-.
T Consensus 22 lLq~qLT~Aq~~l~~~eaQ 40 (99)
T 3ni0_A 22 LLQRQLTRTQDSLLQAETQ 40 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3677788777776666643
No 287
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=73.28 E-value=6.5 Score=33.21 Aligned_cols=42 Identities=19% Similarity=0.057 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhh
Q 007111 468 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKS 509 (617)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~ 509 (617)
+.+||.+++.+-.+....+.||..|...-|-..|+-+|++-|
T Consensus 9 q~T~e~E~q~~~~kk~~aekql~~A~e~~eKl~KKrsS~~gs 50 (101)
T 3teq_A 9 QLTHEVEVQYYNIKKQNAEKQLMVAKEGAEKIKKKRNTLFGT 50 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred hHhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhchhee
Confidence 468999999998888888888888877766666666666544
No 288
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=72.71 E-value=11 Score=32.14 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhhh---ccchhhhccccccch
Q 007111 515 KKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHST---RGVLAGERARAFQLQ 591 (617)
Q Consensus 515 ~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 591 (617)
+.|+....+++.||++++..+.+.|. |..|||=.+=-....++- |+-+++|.- +||
T Consensus 38 eaL~~Kq~~idelk~ei~q~~~~lE~------------------I~vLkaQv~IY~~DF~aERadREkl~~eKe---~L~ 96 (110)
T 2v4h_A 38 EALVAKQELIDKLKEEAEQHKIVMET------------------VPVLKAQADIYKADFQAERHAREKLVEKKE---YLQ 96 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHccchhhHHHHHhHHH---HHH
Confidence 33444555666666666665544332 777777666555555543 344444432 344
Q ss_pred hhHHHHHHHHhh
Q 007111 592 VEVFHLKQRLQS 603 (617)
Q Consensus 592 ~~~~~~~~~~~~ 603 (617)
..+--|..+++.
T Consensus 97 ~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 97 EQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 455555554443
No 289
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=72.54 E-value=94 Score=32.17 Aligned_cols=201 Identities=12% Similarity=0.074 Sum_probs=99.1
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCc-EEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETEC-WSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLK 132 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~ 132 (617)
++.+|+.... .. ..+++|++.+.. ...+... ..+.....+.+++. ++.||+.. . ...+++||+.
T Consensus 182 g~~l~~~d~~-~~----~~I~~~d~~~~~~~~~~g~~-~~~~~~~p~~iav~p~~g~lyv~d---~----~~~I~~~d~~ 248 (409)
T 3hrp_A 182 KQRVYSIGWE-GT----HTVYVYMKASGWAPTRIGQL-GSTFSGKIGAVALDETEEWLYFVD---S----NKNFGRFNVK 248 (409)
T ss_dssp SSEEEEEBSS-TT----CEEEEEEGGGTTCEEEEEEC-CTTSCSCCCBCEECTTSSEEEEEC---T----TCEEEEEETT
T ss_pred CCcEEEEecC-CC----ceEEEEEcCCCceeEEeeec-cchhcCCcEEEEEeCCCCeEEEEE---C----CCcEEEEECC
Confidence 4466666432 11 179999987653 2333110 01122222334443 57899832 1 2479999999
Q ss_pred CCcEEEeecCCCCCCCCcc-c-EEEEEC-CcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCC--------C-C
Q 007111 133 SLTWLPLHCTGTGPSPRSN-H-VAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPS--------P-R 200 (617)
Q Consensus 133 t~~W~~l~~~g~~P~~R~~-h-~a~~~~-~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~--------~-R 200 (617)
+.....+...+........ + .+++.. +..||+.... .+.|++||+... ...+...+..+. . .
T Consensus 249 ~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~-----~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~ 322 (409)
T 3hrp_A 249 TQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN-----LSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALF 322 (409)
T ss_dssp TCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT-----TTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBC
T ss_pred CCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC-----CCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEe
Confidence 8875554211111111222 1 455554 4558887543 246999998655 333332210000 0 1
Q ss_pred cceEEEEE--CCEEEEEec-CCCCCccceEEEEECCCCcEEEeecCCCCC-------CCC-CcceEEEEEeecCCcEEEE
Q 007111 201 AGCCGVLC--GTKWYIAGG-GSRKKRHAETLIFDILKGEWSVAITSPSSS-------VTS-NKGFTLVLVQHKEKDFLVA 269 (617)
Q Consensus 201 ~~ha~v~~--~~~IyI~GG-~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~-------p~~-r~~~s~v~v~~~~~~~L~I 269 (617)
.....+.+ ++.+|+... .+ ..+.++|+.+.....+...+... ... ......+++.. ++.|||
T Consensus 323 ~~P~gia~d~dG~lyvad~~~~-----~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~--~g~lyV 395 (409)
T 3hrp_A 323 AQPNGMTVDEDGNFYIVDGFKG-----YCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDG--EGGYWI 395 (409)
T ss_dssp SSEEEEEECTTCCEEEEETTTT-----CEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECS--SSEEEE
T ss_pred CCCeEEEEeCCCCEEEEeCCCC-----CEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcC--CCCEEE
Confidence 12233333 567999854 32 46899997777666654321100 001 12233344442 367887
Q ss_pred EcCCCCCCCCeEEEEEC
Q 007111 270 FGGIKKEPSNQVEVLSI 286 (617)
Q Consensus 270 ~GG~~~~~~~dV~vyd~ 286 (617)
....+ +.|.++++
T Consensus 396 ad~~n----~~Ir~i~~ 408 (409)
T 3hrp_A 396 AEAWG----KAIRKYAV 408 (409)
T ss_dssp EESTT----CEEEEEEE
T ss_pred EECCC----CeEEEEEe
Confidence 76432 35666654
No 290
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=72.26 E-value=2.5 Score=37.69 Aligned_cols=77 Identities=25% Similarity=0.304 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhccc
Q 007111 507 LKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERAR 586 (617)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (617)
-.-|.++|..+..+..|+|.|---| =||||+ ||... |.|+. -++-=.+.++..|+-++++|..
T Consensus 59 ~~~R~~aE~~~~~ie~ElE~LTasL------FeEAN~---MVa~a--r~~~~--~~e~r~~~L~~ql~e~e~ll~~---- 121 (135)
T 2e7s_A 59 NELRTKAEEEADKLNKEVEDLTASL------FDEANN---LVADA--RMEKY--AIEILNKRLTEQLREKDMLLDT---- 121 (135)
T ss_dssp TSHHHHHHHTTHHHHHHHHHHHHHH------HHHHHH---HHHHT--THHHH--HHHHHHHHHHHTTTHHHHCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH---HHHHH--HHHHH--HHHHHHHHHHHHHHHHHHHHHH----
Confidence 3445566666666666666653211 156664 45544 44432 2333345566667777777765
Q ss_pred cccchhhHHHHHHHHhh
Q 007111 587 AFQLQVEVFHLKQRLQS 603 (617)
Q Consensus 587 ~~~~~~~~~~~~~~~~~ 603 (617)
||..+.+||.-+++
T Consensus 122 ---lq~QL~~LK~v~~~ 135 (135)
T 2e7s_A 122 ---LTLQLKNLKKVMHS 135 (135)
T ss_dssp -----------------
T ss_pred ---HHHHHHHHHHHhcC
Confidence 67777788876653
No 291
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=71.80 E-value=18 Score=33.44 Aligned_cols=105 Identities=16% Similarity=0.207 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccc
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIV 548 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~ 548 (617)
.....+.+.|=.....|+.++....+.+++-..+.+-.-....+|+.++.....|++-+|+++..++..--...---+..
T Consensus 51 rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~l 130 (168)
T 3o0z_A 51 RELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHS 130 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666667777777777777777666666666666778888888888888888887776653321111111111
Q ss_pred cCCCcchhhhHHH-HHHHHHHHHHhh
Q 007111 549 HSDNVRLEHDVAF-LKAVLDDTQKEL 573 (617)
Q Consensus 549 ~~~~~~~~~~~~~-~~~~~~~~~~~~ 573 (617)
..+.-.+|-|+-| |||+-.-.+.|.
T Consensus 131 EKe~a~~eid~~~eLKalQ~~~eqE~ 156 (168)
T 3o0z_A 131 EKEKNNLEIDLNYKLKSLQQRLEQEV 156 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 2222234434333 666665555554
No 292
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=71.71 E-value=92 Score=31.72 Aligned_cols=193 Identities=15% Similarity=0.138 Sum_probs=103.2
Q ss_pred eEEEEECCC--CcEEEccccccCCCCCCCCCCCcccceEEEEE---CCEEEEEcccCCCCCCceEEEEEECCCCcEEEee
Q 007111 15 DVQVLNFDR--FSWTAASSKLYLSPSSLPLKIPACRGHSLISW---GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVE 89 (617)
Q Consensus 15 ~v~~yd~~t--~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~---g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 89 (617)
.+++|+... .+|..+... .....-++++.. .+.||+.+.. . ..-..+++.+-...+|+.+.
T Consensus 32 Gl~~~~~~~~g~~W~~~~~~-----------~~~~~v~~i~~dp~~~~~l~~g~~~-g--~~g~gl~~s~D~G~tW~~~~ 97 (394)
T 3b7f_A 32 GAWFLASDPARRTWELRGPV-----------FLGHTIHHIVQDPREPERMLMAART-G--HLGPTVFRSDDGGGNWTEAT 97 (394)
T ss_dssp EEEEEEECTTSCSEEEEEEE-----------STTSEEEEEEECSSSTTCEEEEEEC-----CCEEEEEESSTTSCCEECS
T ss_pred ceEEEECCCCCCCceECCcc-----------CCCCceEEEEECCCCCCeEEEEecC-C--CCCccEEEeCCCCCCceECC
Confidence 477787654 689876421 111123555554 4678876532 1 01125888877788999886
Q ss_pred ccCCCCCC--c-------ceeEEEEE----CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCC---------
Q 007111 90 AKGDIPVA--R-------SGHTVVRA----SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPS--------- 147 (617)
Q Consensus 90 ~~g~~P~~--R-------~~~s~~~~----~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~--------- 147 (617)
....++.. + .-.+++.. .+.||+.+. ..-+++.+-...+|+.+......|.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~-------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~ 170 (394)
T 3b7f_A 98 RPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS-------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQ 170 (394)
T ss_dssp BCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE-------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC-
T ss_pred ccccCCCcccccccccccceeEEEeCCCCCCCEEEEEec-------CCcEEEEcCCCCCeEECcCccCCccccccccccc
Confidence 42112211 1 11123332 457776542 2347888777789998742111121
Q ss_pred -----CCcccEEEEE--CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCC---CCCC-----CCcceEEEEEC---
Q 007111 148 -----PRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRG---FHPS-----PRAGCCGVLCG--- 209 (617)
Q Consensus 148 -----~R~~h~a~~~--~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g---~~P~-----~R~~ha~v~~~--- 209 (617)
...-+++++. +...||+..+. ..+++.+-...+|+.+.... ..|. ....++++...
T Consensus 171 ~g~~~~~~i~~i~~d~~~~~~l~vg~~~------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~ 244 (394)
T 3b7f_A 171 DGTPDGPKMHSILVDPRDPKHLYIGMSS------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAP 244 (394)
T ss_dssp ---CCCCEEEEEEECTTCTTCEEEEEET------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSST
T ss_pred cCCCCCCceeEEEECCCCCCEEEEEECC------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCC
Confidence 1112233332 12336665432 23888877788999885411 0121 12234444442
Q ss_pred CEEEEEecCCCCCccceEEEEECCCCcEEEee
Q 007111 210 TKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 241 (617)
Q Consensus 210 ~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~ 241 (617)
+.+|+..+ ..+++++-...+|+.+.
T Consensus 245 ~~l~vg~~-------~gl~~s~D~G~tW~~~~ 269 (394)
T 3b7f_A 245 DILYQQNH-------CGIYRMDRREGVWKRIG 269 (394)
T ss_dssp TEEEEEET-------TEEEEEETTTTEEECGG
T ss_pred CEEEEEcC-------CeEEEeCCCCCcceECC
Confidence 66777432 24888888889999875
No 293
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=71.50 E-value=10 Score=41.69 Aligned_cols=13 Identities=23% Similarity=0.230 Sum_probs=5.0
Q ss_pred HHHHHHHHHHhhh
Q 007111 522 KEMELLKEKLAGL 534 (617)
Q Consensus 522 ~~~~~lkek~~~~ 534 (617)
+|++.|+.++...
T Consensus 544 ~~~~~le~~~~~~ 556 (597)
T 3oja_B 544 QENIALEKQLDNK 556 (597)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhh
Confidence 3333443333333
No 294
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=71.43 E-value=89 Score=32.30 Aligned_cols=157 Identities=12% Similarity=0.151 Sum_probs=82.8
Q ss_pred eEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcE--EEeeccC-CCCCCcceeEEEE-ECCEEEEEeecCCCCCccCe
Q 007111 50 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECW--SVVEAKG-DIPVARSGHTVVR-ASSVLILFGGEDGKRRKLND 125 (617)
Q Consensus 50 hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W--~~~~~~g-~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~ 125 (617)
-+++.+++++|+|=|. .+|+++.....- ..+.... .+| ....++... .++++|+|-| +.
T Consensus 184 DAv~~~~g~~~fFkg~--------~~Wr~~~~~~~~~p~~I~~~wpgLP-~~iDAa~~~~~~g~~~fFkg--------~~ 246 (365)
T 3ba0_A 184 DAVTTVGNKIFFFKDR--------FFWLKVSERPKTSVNLISSLWPTLP-SGIEAAYEIEARNQVFLFKD--------DK 246 (365)
T ss_dssp SCEEEETTEEEEEETT--------EEEECCSSCCCCCEEEHHHHCSSCC-SSCCEEEEEGGGTEEEEEET--------TE
T ss_pred eeEEEcCCeEEEEeCC--------EEEEEcCCCccCCccchhhhccCCC-CCccEEEEecCCCEEEEEeC--------CE
Confidence 3456679999999664 488887554321 1221111 234 334433333 2689999854 34
Q ss_pred EEEEECCCCc--E-EEeecCCCCCCC--CcccEEEEEC-CcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecC----CC
Q 007111 126 LHMFDLKSLT--W-LPLHCTGTGPSP--RSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR----GF 195 (617)
Q Consensus 126 v~~yD~~t~~--W-~~l~~~g~~P~~--R~~h~a~~~~-~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~----g~ 195 (617)
+|+|+..... + +.+... .+|.. ... ++.... +..+|+|=| +..|+||..+.+-..--+. +-
T Consensus 247 yWr~~~~~~~~gyPk~I~~~-GlP~~~~~ID-AA~~~~~~~~~yfFkG-------~~yw~yd~~~~~v~~gyPk~I~~~f 317 (365)
T 3ba0_A 247 YWLISNLRPEPNYPKSIHSF-GFPNFVKKID-AAVFNPRFYRTYFFVD-------NQYWRYDERRQMMDPGYPKLITKNF 317 (365)
T ss_dssp EEECSTTSCTTTCSEETTTT-TCCTTCCCCC-EEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCCCHHHHS
T ss_pred EEEEcCCcccCCCCceeeec-cCCCCCCCcC-EEEEeCCCCEEEEEEC-------CEEEEEeCCcceecCCCCcchhhcC
Confidence 6777543211 1 122111 13431 222 333343 334899977 3589999876542210000 00
Q ss_pred CCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEE
Q 007111 196 HPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSV 239 (617)
Q Consensus 196 ~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~ 239 (617)
+..|..-.++... ++++|+|-| +..|+||..+.+...
T Consensus 318 ~g~p~~iDaA~~~~~g~~YfFkg-------~~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 318 QGIGPKIDAVFYSKNKYYYFFQG-------SNQFEYDFLLQRITK 355 (365)
T ss_dssp TTCCSSCSEEEEETTTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred CCCCCccceeeEecCCcEEEEeC-------CEEEEEECCccEEec
Confidence 1122223355555 889999977 458999998876555
No 295
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=71.41 E-value=1.2e+02 Score=32.90 Aligned_cols=155 Identities=10% Similarity=0.063 Sum_probs=80.0
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCC--CCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEEC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP--VARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDL 131 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P--~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~ 131 (617)
++++++.||.+. .+.+||..+......-....+. ........+.+ ++.+++.||.+ ..+.++|+
T Consensus 201 dg~~las~s~D~------~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D------~~v~lWd~ 268 (611)
T 1nr0_A 201 DGSLFASTGGDG------TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD------KTIKIWNV 268 (611)
T ss_dssp TSSEEEEEETTS------CEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT------SEEEEEET
T ss_pred CCCEEEEEECCC------cEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC------CeEEEEeC
Confidence 567777777632 4888888777643321100000 01111112222 56777777754 35889999
Q ss_pred CCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CC
Q 007111 132 KSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT 210 (617)
Q Consensus 132 ~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~ 210 (617)
.+.+....-..+. ........+.+++. .++.++.++ .+..||+.+........ + ....-.+++.. ++
T Consensus 269 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~l~s~s~d~-----~i~~~~~~~~~~~~~~~-g---h~~~v~~l~~spdg 336 (611)
T 1nr0_A 269 ATLKVEKTIPVGT--RIEDQQLGIIWTKQ-ALVSISANG-----FINFVNPELGSIDQVRY-G---HNKAITALSSSADG 336 (611)
T ss_dssp TTTEEEEEEECCS--SGGGCEEEEEECSS-CEEEEETTC-----CEEEEETTTTEEEEEEC-C---CSSCEEEEEECTTS
T ss_pred CCCceeeeecCCC--CccceeEEEEEcCC-EEEEEeCCC-----cEEEEeCCCCCcceEEc-C---CCCCEEEEEEeCCC
Confidence 9887654321111 11112233444666 566666654 37888988776333221 1 11111223332 56
Q ss_pred EEEEEecCCCCCccceEEEEECCCCcEEE
Q 007111 211 KWYIAGGGSRKKRHAETLIFDILKGEWSV 239 (617)
Q Consensus 211 ~IyI~GG~s~~~~~~~v~~yDl~~~~W~~ 239 (617)
..++.|+..+ .+.++|+.+.....
T Consensus 337 ~~l~s~s~D~-----~v~~Wd~~~~~~~~ 360 (611)
T 1nr0_A 337 KTLFSADAEG-----HINSWDISTGISNR 360 (611)
T ss_dssp SEEEEEETTS-----CEEEEETTTCCEEE
T ss_pred CEEEEEeCCC-----cEEEEECCCCceee
Confidence 6666776543 47788887765443
No 296
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=71.14 E-value=1.2e+02 Score=33.33 Aligned_cols=152 Identities=9% Similarity=-0.048 Sum_probs=69.3
Q ss_pred eEEEEEECCCCc---EEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEE----CCCCcEEEeec--
Q 007111 73 VSVWTFDTETEC---WSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFD----LKSLTWLPLHC-- 141 (617)
Q Consensus 73 ~~v~~yd~~t~~---W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD----~~t~~W~~l~~-- 141 (617)
..++++|+.+.. |..+.....+.........+.. ++++++....... ....++++| +.+.++..+..
T Consensus 224 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~--~~~~l~~~d~~~~~~~g~~~~~~~~~ 301 (719)
T 1z68_A 224 VRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQ--NVSVLSICDFREDWQTWDCPKTQEHI 301 (719)
T ss_dssp EEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESST--TEEEEEEEEECSSSSSEECCGGGEEE
T ss_pred eEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEecccc--CeEEEEEEcccCCCCCCceEEEEecc
Confidence 378889988765 2233210000011111122222 4666655322222 235799999 77766554421
Q ss_pred -CCCCCCCCcc-----cEEEEECCcEEEEE-ccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEE
Q 007111 142 -TGTGPSPRSN-----HVAALYDDKNLLIF-GGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYI 214 (617)
Q Consensus 142 -~g~~P~~R~~-----h~a~~~~~~~LyV~-GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI 214 (617)
.+. ..... ..+..-+++.+++. ...++ ...++.+|+.++....+... ... ........++.||+
T Consensus 302 ~~~~--~~~~~~~~~~~~~~spdg~~l~~~~~~~~g---~~~l~~~~~~~~~~~~lt~~---~~~-v~~~~~~d~~~i~~ 372 (719)
T 1z68_A 302 EESR--TGWAGGFFVSTPVFSYDAISYYKIFSDKDG---YKHIHYIKDTVENAIQITSG---KWE-AINIFRVTQDSLFY 372 (719)
T ss_dssp EECS--SSCSSSSSCCCCEECTTSSCEEEEEECTTS---CEEEEEESSCSTTCEECSCS---SSC-EEEEEEECSSEEEE
T ss_pred cccC--CceEccccCCccEECCCCCeEEEEEEccCC---ceEEEEEECCCCceEecccC---ceE-EEEEEEEeCCEEEE
Confidence 011 11111 12222345545553 33332 35799999988876555321 111 11112223456666
Q ss_pred EecC-CCCCccceEEEEECCCC
Q 007111 215 AGGG-SRKKRHAETLIFDILKG 235 (617)
Q Consensus 215 ~GG~-s~~~~~~~v~~yDl~~~ 235 (617)
.+.. ........+|.+++...
T Consensus 373 ~~~~~~~~~~~~~l~~~~~~~g 394 (719)
T 1z68_A 373 SSNEFEEYPGRRNIYRISIGSY 394 (719)
T ss_dssp EESCGGGCTTCBEEEEEECSSS
T ss_pred EEecCCCCCceEEEEEEeCCCC
Confidence 6543 01122346888887554
No 297
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=71.07 E-value=12 Score=26.18 Aligned_cols=45 Identities=29% Similarity=0.392 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e 535 (617)
+..+||+.|.+.|-.| -++-|.+|+-+|+.-.|+..|...+|.-|
T Consensus 7 ylrkkiarlkkdnlql---------------------erdeqnlekiianlrdeiarlenevashe 51 (52)
T 3he5_B 7 YLRKKIARLKKDNLQL---------------------ERDEQNLEKIIANLRDEIARLENEVASHE 51 (52)
T ss_dssp HHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhhhhhhh---------------------hhhHhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4567888888777776 35678888888887777777776666543
No 298
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=70.51 E-value=64 Score=38.59 Aligned_cols=185 Identities=15% Similarity=0.142 Sum_probs=102.3
Q ss_pred cceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeecc--CCCCCCcceeEEEEE---CCEEEEEeecCCCCCc
Q 007111 48 RGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK--GDIPVARSGHTVVRA---SSVLILFGGEDGKRRK 122 (617)
Q Consensus 48 ~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~--g~~P~~R~~~s~~~~---~~~IYv~GG~~~~~~~ 122 (617)
.++++....+.+ ++|.- +.....-.++.|......|-.-.+. +.......+++++.. +...|++|--..+ .
T Consensus 335 ~GfSa~~t~d~~-~~Gap-G~~~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sylGySVa~~~~~g~~~~v~GAP~~~--~ 410 (1095)
T 3k6s_A 335 EGFSAVFTPDGP-VLGAV-GSFTWSGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWKGVQSLVLGAPRYQ--H 410 (1095)
T ss_dssp TTSSEECCTTCC-EEEES-CSTTTTBEEEECCSSSCCEEECCCSSCCCCCSCCBTSSEECCCCSSSCEEEEEETTGG--G
T ss_pred ccccceecCCcc-eEccc-ccCCccceeEEecCCCcceeeccccccccccccccceeeEEeccCCceEEEEEccccc--c
Confidence 356666665555 78753 2233345788888766554332211 122334446666543 2355677754332 3
Q ss_pred cCeEEEEECCCCcEEEee-cCCCCCCCCcccEEEEEC---Cc--EEEEEccCCC--CCCCCeEEEEECCC--CcEEEeec
Q 007111 123 LNDLHMFDLKSLTWLPLH-CTGTGPSPRSNHVAALYD---DK--NLLIFGGSSK--SKTLNDLYSLDFET--MIWTRIKI 192 (617)
Q Consensus 123 ~~~v~~yD~~t~~W~~l~-~~g~~P~~R~~h~a~~~~---~~--~LyV~GG~~~--~~~~n~v~~yD~~t--~~W~~~~~ 192 (617)
...+++|......|.... ..|.-....+|++.++.+ |. -++++|.-.. ......+|+|.... ..|.....
T Consensus 411 ~G~V~i~~~~~~~~~~~~~~~g~~~gs~fG~sva~~DvngDG~~DllvvGAP~~~~~~~~G~Vyvy~~~~~~~~~~~~~~ 490 (1095)
T 3k6s_A 411 TGKAVIFTQVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLPRGWRRWWCDAV 490 (1095)
T ss_dssp TCEEEEEECCTTTCCEEEEECCSSTTSCTTSCEEEECSSSSSSCCEEEEECSSCCSSCCCBCEEEEECCSSTTCCCSCSS
T ss_pred cceEEEEEecCCcceEEeecccCcccCcCCceEEEEEeCCCCCccEEEECCccccCcCCCCEEEEEEeCCCCcceeeeEE
Confidence 567999998877887653 335545567788887753 11 2666764321 22335688886543 45764322
Q ss_pred -CCCC--CCCCcceEEEEECC-------EEEEEecCCCCCccceEEEEECCCC-cE
Q 007111 193 -RGFH--PSPRAGCCGVLCGT-------KWYIAGGGSRKKRHAETLIFDILKG-EW 237 (617)
Q Consensus 193 -~g~~--P~~R~~ha~v~~~~-------~IyI~GG~s~~~~~~~v~~yDl~~~-~W 237 (617)
.+.. +..|.+++++.++| .| ++|.-........+|+|.-... .|
T Consensus 491 l~g~~~~~~~~FG~sva~~gD~NgDG~~Dl-~VGAP~~~~~~G~vyi~~g~~~~g~ 545 (1095)
T 3k6s_A 491 LYGEQGHPWGRFGAALTVLGDVNGDKLTDV-VIGAPGEEENRGAVYLFHGVLGPSI 545 (1095)
T ss_dssp CCCCCSCSSCCBTSCEEEEECSSSSSCCEE-EEECTTTTTSCCBEEEEEBCSSSCB
T ss_pred eecccCCccccCccceEeecccCCCCCcCE-EEeCCcCCCCCCEEEEecCCCCCCc
Confidence 1221 35678888876522 24 4553222334567888887655 44
No 299
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=69.94 E-value=88 Score=30.79 Aligned_cols=144 Identities=11% Similarity=0.111 Sum_probs=69.8
Q ss_pred CCEEEEEeecCCCCCccCeEEEEECCCCcEEE-eecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCC
Q 007111 107 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP-LHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFET 184 (617)
Q Consensus 107 ~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~-l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t 184 (617)
++.+++.|+.++ .+.+||+.+.+... +. +. ...-.+++.. ++. .++.||.++ .+..||+..
T Consensus 87 ~~~~l~s~s~D~------~v~lwd~~~~~~~~~~~--~h---~~~v~~v~~sp~~~-~l~s~~~d~-----~i~~wd~~~ 149 (343)
T 2xzm_R 87 ENCFAISSSWDK------TLRLWDLRTGTTYKRFV--GH---QSEVYSVAFSPDNR-QILSAGAER-----EIKLWNILG 149 (343)
T ss_dssp STTEEEEEETTS------EEEEEETTSSCEEEEEE--CC---CSCEEEEEECSSTT-EEEEEETTS-----CEEEEESSS
T ss_pred CCCEEEEEcCCC------cEEEEECCCCcEEEEEc--CC---CCcEEEEEECCCCC-EEEEEcCCC-----EEEEEeccC
Confidence 456666776543 58899998876432 21 11 1111123333 455 677777764 388898864
Q ss_pred CcEEEeecCCCCCCCCcceEEEEE-C-----------CEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCc
Q 007111 185 MIWTRIKIRGFHPSPRAGCCGVLC-G-----------TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNK 252 (617)
Q Consensus 185 ~~W~~~~~~g~~P~~R~~ha~v~~-~-----------~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~ 252 (617)
..-...... .........+.+ . +.+++.|+.. ..+.+||.....-..+.. ...
T Consensus 150 ~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~-------h~~ 214 (343)
T 2xzm_R 150 ECKFSSAEK---ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD-----GRLKVWNTNFQIRYTFKA-------HES 214 (343)
T ss_dssp CEEEECCTT---TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETT-----SEEEEEETTTEEEEEEEC-------CSS
T ss_pred Cceeeeecc---cCCCceeeeeeeccccccccccCCCCCEEEEEcCC-----CEEEEEcCCCceeEEEcC-------ccc
Confidence 433222211 111111122222 1 1456666654 347778843322112210 111
Q ss_pred ceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 253 GFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 253 ~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
....+.+.. ++.+++.||.++ .|.+||+..
T Consensus 215 ~v~~~~~s~--~g~~l~sgs~dg----~v~iwd~~~ 244 (343)
T 2xzm_R 215 NVNHLSISP--NGKYIATGGKDK----KLLIWDILN 244 (343)
T ss_dssp CEEEEEECT--TSSEEEEEETTC----EEEEEESSC
T ss_pred cceEEEECC--CCCEEEEEcCCC----eEEEEECCC
Confidence 233344432 344677787654 688899843
No 300
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=69.85 E-value=24 Score=27.90 Aligned_cols=59 Identities=24% Similarity=0.270 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHH-----HHHHHHHHHHHHHHHHHhhh
Q 007111 471 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEME-----KKLADSLKEMELLKEKLAGL 534 (617)
Q Consensus 471 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~lkek~~~~ 534 (617)
-..|++++-.+|..||+||..+-..++.+.-+ +++.+.| .-|.-.+-|+-.|+.+||.+
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~-----q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSE-----QDAFRSNLKTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 34677777788888888877776666655432 2222222 22334566788899888875
No 301
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=69.64 E-value=13 Score=30.44 Aligned_cols=60 Identities=23% Similarity=0.228 Sum_probs=47.7
Q ss_pred HHHHHHhchhhHhHHHHhhcHHHHhhhhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007111 476 AALIRKNGILEGQLAAALVNREAAEKNFSSV---LKSRQEMEKKLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 476 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~lkek~~~~e 535 (617)
+.+-.+.+.|.+|+.-.+.-||-||+=+--. -+++..++..|..+.+.++.|++.|.+++
T Consensus 21 ~~le~~r~~ir~eI~KElKiKeGaENL~katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~eL~ 83 (86)
T 1cxz_B 21 QQLELERERLRREIRKELKLKEGAENLRRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQELH 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666778888888899999998743332 34589999999999999999999999885
No 302
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=69.32 E-value=22 Score=28.61 Aligned_cols=54 Identities=37% Similarity=0.361 Sum_probs=29.2
Q ss_pred HHHHHHHHhchhhHhHHHH-------hhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007111 474 KMAALIRKNGILEGQLAAA-------LVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 534 (617)
Q Consensus 474 ~~~~~~~~~~~~~~q~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~ 534 (617)
|++++-.+|..||++|..+ ....+.+...+..++ .-|.-++-|+-.|+.+||.+
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~-------e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA-------QLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHHHh
Confidence 4444555555555555544 444444444433332 22334566788899998875
No 303
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=68.91 E-value=10 Score=33.26 Aligned_cols=51 Identities=25% Similarity=0.395 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCC------cchhhhHHHHHHHHHHHHHhhh
Q 007111 518 ADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDN------VRLEHDVAFLKAVLDDTQKELH 574 (617)
Q Consensus 518 ~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 574 (617)
++....+..|.-|+|.+| .++-++-+ ..| --|+.+++--||=|+.||++|.
T Consensus 64 eeL~~ki~eL~~kvA~le---~e~~~~e~---~~~~~~~~~e~le~~la~KkAEleKtqa~Ld 120 (125)
T 2pms_C 64 EELSDKIDELDAEIAKLE---DQLKAAEE---NNNVEDYFKEGLEKTIAAKKAELEKTEADLK 120 (125)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHCCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH---HHHHHHHh---cccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666555 33333332 222 2367889999999999999986
No 304
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=68.34 E-value=16 Score=39.36 Aligned_cols=42 Identities=21% Similarity=0.227 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHh-HHhhhcccccccCC
Q 007111 510 RQEMEKKLADSLKEMELLKEKLAGLELA-QEEANSLSNIVHSD 551 (617)
Q Consensus 510 ~~~~~~~~~~~~~~~~~lkek~~~~e~~-qe~~~~~~~~~~~~ 551 (617)
.+++..++..+.+++..|++++..+|.. ++....|-|++|.+
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~ 113 (455)
T 2dq0_A 71 VDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPS 113 (455)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 4455555555555555566555555433 35566799999985
No 305
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=68.08 E-value=20 Score=29.72 Aligned_cols=23 Identities=35% Similarity=0.297 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhchhhHhHHH
Q 007111 469 QFYESKMAALIRKNGILEGQLAA 491 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~ 491 (617)
|.-..++|.+|-+--.||+|=..
T Consensus 12 q~LNdRlAsyIdKVR~LEqqN~~ 34 (93)
T 3s4r_A 12 QELNDRFANLIDKVRFLEQQNKI 34 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888888776433
No 306
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=67.96 E-value=46 Score=34.21 Aligned_cols=142 Identities=14% Similarity=0.071 Sum_probs=74.2
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCc---EEEeeccCCCCCCcceeEE-EEE--CCEEEEEeecCCCCCccCeEEEE
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETEC---WSVVEAKGDIPVARSGHTV-VRA--SSVLILFGGEDGKRRKLNDLHMF 129 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~---W~~~~~~g~~P~~R~~~s~-~~~--~~~IYv~GG~~~~~~~~~~v~~y 129 (617)
.+.+||.|-... ..++++++.... |-.-. +.+..+.+... +.. +..|++..+ . ..++.|
T Consensus 147 ~GnaYVt~s~~~-----~~I~rV~pdG~~~~~~~~~~---~~~~~~~G~nGIv~~pdg~~Liv~~~-~------g~L~~f 211 (334)
T 2p9w_A 147 DGNSYVAFALGM-----PAIARVSADGKTVSTFAWES---GNGGQRPGYSGITFDPHSNKLIAFGG-P------RALTAF 211 (334)
T ss_dssp TSCEEEEEEESS-----CEEEEECTTSCCEEEEEECC---CCSSSCCSCSEEEEETTTTEEEEESS-S------SSEEEE
T ss_pred CCCEEEeCCCCC-----CeEEEEeCCCCEEeeeeecC---CCcccccCcceEEEeCCCCEEEEEcC-C------CeEEEE
Confidence 579999765420 359999998653 54322 22344555443 444 346666654 2 348999
Q ss_pred ECCCCcEEEeecC--CCC-CCC-CcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCC---CCcc
Q 007111 130 DLKSLTWLPLHCT--GTG-PSP-RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPS---PRAG 202 (617)
Q Consensus 130 D~~t~~W~~l~~~--g~~-P~~-R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~---~R~~ 202 (617)
|+.+-....++.. |.. ... -.+....-++++.++|.-+. +.++++-...+ |......+..|. ++..
T Consensus 212 D~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~------~~~~~l~S~Dg-W~sa~~~g~~~~~~~~~g~ 284 (334)
T 2p9w_A 212 DVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARA------PYAISFRSWDN-WKSANIKKTKRSELQNSGF 284 (334)
T ss_dssp ECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEET------TEEEEEECSST-TSEEEEEEEECGGGGSSCE
T ss_pred cCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCC------CCEEEEECCCC-cceeEEeeeecCccccCce
Confidence 9885332123221 211 100 01111223577733554432 33555555555 987765444443 3433
Q ss_pred eEEEE----ECCEEEEEecCC
Q 007111 203 CCGVL----CGTKWYIAGGGS 219 (617)
Q Consensus 203 ha~v~----~~~~IyI~GG~s 219 (617)
.+.+. .+++||++.+.-
T Consensus 285 tt~t~~~~~~~~~iYvv~~~f 305 (334)
T 2p9w_A 285 TAVADYYQGSEQGLYAVSAFF 305 (334)
T ss_dssp EEEEEEEETTEEEEEEEECCG
T ss_pred eEEEEeccccCCeEEEEeeec
Confidence 34444 578999998643
No 307
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=67.49 E-value=1.1 Score=46.52 Aligned_cols=147 Identities=19% Similarity=0.213 Sum_probs=0.0
Q ss_pred ceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeE
Q 007111 49 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDL 126 (617)
Q Consensus 49 ~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v 126 (617)
+++..++.+..+++|+.+. .++.+|..+.+ |+... +.+. .+.+..++.+|+.|+.++. +
T Consensus 1 g~ssP~v~~~~v~~gs~dg------~v~a~d~~tG~~~W~~~~--~~~~-----s~p~~~~g~~~v~~s~dg~------l 61 (369)
T 2hz6_A 1 GSSTVTLPETLLFVSTLDG------SLHAVSKRTGSIKWTLKE--DPVL-----QVPTHVEEPAFLPDPNDGS------L 61 (369)
T ss_dssp -------CTTEEEEEETTS------EEEEEETTTCCEEEEEEC--CCSC-----CCC-----CCEEECTTTCC------E
T ss_pred CCCCCeeeCCEEEEEcCCC------EEEEEECCCCCEEEEecC--CCce-----ecceEcCCCEEEEeCCCCE------E
Q ss_pred EEEECCCCc--EEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCCc
Q 007111 127 HMFDLKSLT--WLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRA 201 (617)
Q Consensus 127 ~~yD~~t~~--W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~~~~g~~P~~R~ 201 (617)
+.+|..+.+ |+ -....+....++..+ .+. .+++|+.++. ++.+|+.+++ |+.-........|
T Consensus 62 ~a~d~~tG~~~w~-----~~~~~~~~~~~sp~~~~~~-~v~~g~~dg~-----v~a~D~~tG~~~w~~~~~~~~~~~p-- 128 (369)
T 2hz6_A 62 YTLGSKNNEGLTK-----LPFTIPELVQASPCRSSDG-ILYMGKKQDI-----WYVIDLLTGEKQQTLSSAFADSLSP-- 128 (369)
T ss_dssp EEC-----CCSEE-----CSCCHHHHHTTCSCC------CCCCEEEEE-----EEEECCC--------------------
T ss_pred EEEECCCCceeee-----eeccCccccccCceEecCC-EEEEEeCCCE-----EEEEECCCCcEEEEecCCCcccccc--
Q ss_pred ceEEEEECCEEEEEecCCCCCccceEEEEECCCCc--EEE
Q 007111 202 GCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE--WSV 239 (617)
Q Consensus 202 ~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~--W~~ 239 (617)
.+..+++|+..+. ++.||+.+.+ |..
T Consensus 129 -------~~~~v~~~~~dg~-----v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 129 -------STSLLYLGRTEYT-----ITMYDTKTRELRWNA 156 (369)
T ss_dssp -----------EEEEEEEEE-----EECCCSSSSSCCCEE
T ss_pred -------cCCEEEEEecCCE-----EEEEECCCCCEEEeE
No 308
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=67.24 E-value=98 Score=30.28 Aligned_cols=140 Identities=11% Similarity=-0.103 Sum_probs=70.8
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-C-CEEEEEeecCCCCCccCeEEEEECCCC---cEEEeecCCCCCC
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-S-SVLILFGGEDGKRRKLNDLHMFDLKSL---TWLPLHCTGTGPS 147 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~-~~IYv~GG~~~~~~~~~~v~~yD~~t~---~W~~l~~~g~~P~ 147 (617)
..+++||+.+.....+.... .....++.. + +.+|+.-. ..+.+++|++... .+..+. .++.
T Consensus 165 g~v~~~d~~~~~~~~~~~~~-----~~p~gia~~~dg~~lyv~d~------~~~~I~~~~~~~~~~~~~~~~~---~~~g 230 (322)
T 2fp8_A 165 GRLIKYDPSTKETTLLLKEL-----HVPGGAEVSADSSFVLVAEF------LSHQIVKYWLEGPKKGTAEVLV---KIPN 230 (322)
T ss_dssp EEEEEEETTTTEEEEEEEEE-----SCCCEEEECTTSSEEEEEEG------GGTEEEEEESSSTTTTCEEEEE---ECSS
T ss_pred ceEEEEeCCCCEEEEeccCC-----ccCcceEECCCCCEEEEEeC------CCCeEEEEECCCCcCCccceEE---eCCC
Confidence 57999999888766553211 122233333 2 36887632 1357999998752 344332 1221
Q ss_pred CCcccEEEEECCcEEEEEccCCCC-----CCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCC
Q 007111 148 PRSNHVAALYDDKNLLIFGGSSKS-----KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK 222 (617)
Q Consensus 148 ~R~~h~a~~~~~~~LyV~GG~~~~-----~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~ 222 (617)
-..+++-.+..|||....... .....+++||+.......+......+ .....+++..++++||.+...
T Consensus 231 ---P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~-~~~~~~~~~~~g~L~v~~~~~--- 303 (322)
T 2fp8_A 231 ---PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFA-GEHFEQIQEHDGLLYIGTLFH--- 303 (322)
T ss_dssp ---EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTT-TSCCCEEEEETTEEEEECSSC---
T ss_pred ---CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCc-cccceEEEEeCCEEEEeecCC---
Confidence 122333333237776532100 01245899999755444443311011 112223444588999875433
Q ss_pred ccceEEEEECCCC
Q 007111 223 RHAETLIFDILKG 235 (617)
Q Consensus 223 ~~~~v~~yDl~~~ 235 (617)
+.+.+|++...
T Consensus 304 --~~i~~~~~~~~ 314 (322)
T 2fp8_A 304 --GSVGILVYDKK 314 (322)
T ss_dssp --SEEEEEEC---
T ss_pred --CceEEEecccc
Confidence 45888887543
No 309
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=67.04 E-value=1.1e+02 Score=36.73 Aligned_cols=189 Identities=11% Similarity=0.074 Sum_probs=103.5
Q ss_pred CcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcE-EEeec-CCCCCCCCcccEEEEE--CCcEEEEEccCCCCC
Q 007111 97 ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTW-LPLHC-TGTGPSPRSNHVAALY--DDKNLLIFGGSSKSK 172 (617)
Q Consensus 97 ~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W-~~l~~-~g~~P~~R~~h~a~~~--~~~~LyV~GG~~~~~ 172 (617)
.-.++++....+.+ ++|.-.... ....++.|......| ..... .+.+.....|+++++- ++...+|+|--. ..
T Consensus 333 ~q~GfSa~~t~d~~-~~GapG~~~-w~G~v~~~~~~~~~~~~~~~~~~~~~~~sylGySVa~~~~~g~~~~v~GAP~-~~ 409 (1095)
T 3k6s_A 333 AQEGFSAVFTPDGP-VLGAVGSFT-WSGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWKGVQSLVLGAPR-YQ 409 (1095)
T ss_dssp CCTTSSEECCTTCC-EEEESCSTT-TTBEEEECCSSSCCEEECCCSSCCCCCSCCBTSSEECCCCSSSCEEEEEETT-GG
T ss_pred ccccccceecCCcc-eEcccccCC-ccceeEEecCCCcceeeccccccccccccccceeeEEeccCCceEEEEEccc-cc
Confidence 34455666655555 787654432 345688887765544 32211 1233344456666553 233356776332 22
Q ss_pred CCCeEEEEECCCCcEEEeec-CCCCCCCCcceEEEEEC------CEEEEEecCCC--CCccceEEEEECCC--CcEEEee
Q 007111 173 TLNDLYSLDFETMIWTRIKI-RGFHPSPRAGCCGVLCG------TKWYIAGGGSR--KKRHAETLIFDILK--GEWSVAI 241 (617)
Q Consensus 173 ~~n~v~~yD~~t~~W~~~~~-~g~~P~~R~~ha~v~~~------~~IyI~GG~s~--~~~~~~v~~yDl~~--~~W~~l~ 241 (617)
....+++|....+.|..... .+.-.....+++++..+ +.++++|.-.. ......+|+|.... ..|....
T Consensus 410 ~~G~V~i~~~~~~~~~~~~~~~g~~~gs~fG~sva~~DvngDG~~DllvvGAP~~~~~~~~G~Vyvy~~~~~~~~~~~~~ 489 (1095)
T 3k6s_A 410 HTGKAVIFTQVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLPRGWRRWWCDA 489 (1095)
T ss_dssp GTCEEEEEECCTTTCCEEEEECCSSTTSCTTSCEEEECSSSSSSCCEEEEECSSCCSSCCCBCEEEEECCSSTTCCCSCS
T ss_pred ccceEEEEEecCCcceEEeecccCcccCcCCceEEEEEeCCCCCccEEEECCccccCcCCCCEEEEEEeCCCCcceeeeE
Confidence 34579999888888987653 33333445666676632 24677774221 22345688886544 3476433
Q ss_pred cCCCCC--CCCCcceEEEEEee-c--CCcEEEEEcC-CCCCCCCeEEEEECCCC
Q 007111 242 TSPSSS--VTSNKGFTLVLVQH-K--EKDFLVAFGG-IKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 242 ~~~~~~--p~~r~~~s~v~v~~-~--~~~~L~I~GG-~~~~~~~dV~vyd~~~~ 289 (617)
...... +..+.+.+.+++++ + +..-|+ +|. ........|++|.-..+
T Consensus 490 ~l~g~~~~~~~~FG~sva~~gD~NgDG~~Dl~-VGAP~~~~~~G~vyi~~g~~~ 542 (1095)
T 3k6s_A 490 VLYGEQGHPWGRFGAALTVLGDVNGDKLTDVV-IGAPGEEENRGAVYLFHGVLG 542 (1095)
T ss_dssp SCCCCCSCSSCCBTSCEEEEECSSSSSCCEEE-EECTTTTTSCCBEEEEEBCSS
T ss_pred EeecccCCccccCccceEeecccCCCCCcCEE-EeCCcCCCCCCEEEEecCCCC
Confidence 322221 45788888887643 2 233354 443 22234678899887665
No 310
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=66.98 E-value=88 Score=34.97 Aligned_cols=106 Identities=14% Similarity=0.013 Sum_probs=49.7
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCC-CCcc-cceEEEEECCEEEEEcccCCC---CCCceEEEEEECCCCcEEEee
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLK-IPAC-RGHSLISWGKKVLLVGGKTDS---GSDRVSVWTFDTETECWSVVE 89 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~-~p~r-~~hs~v~~g~~lyV~GG~~~~---~~~~~~v~~yd~~t~~W~~~~ 89 (617)
.+..||+.++.-..+-.... .. .... ..++ ..-+++.++++..... .+...++|+||+.++....+.
T Consensus 37 ~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~ 108 (740)
T 4a5s_A 37 NILVFNAEYGNSSVFLENST-------FDEFGHSINDYS-ISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEE 108 (740)
T ss_dssp EEEEEETTTCCEEEEECTTT-------TTTCCSCCCEEE-ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS
T ss_pred cEEEEECCCCceEEEEechh-------hhhhcccccceE-ECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcc
Confidence 68899998887554422100 00 0000 0011 2224544444432111 122357999999998765553
Q ss_pred ccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEe
Q 007111 90 AKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPL 139 (617)
Q Consensus 90 ~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l 139 (617)
..+. ........-+++.++++- -+++|++|..+..-.++
T Consensus 109 ---~~~~-~~~~~~~SPdG~~la~~~-------~~~i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 109 ---RIPN-NTQWVTWSPVGHKLAYVW-------NNDIYVKIEPNLPSYRI 147 (740)
T ss_dssp ---CCCT-TEEEEEECSSTTCEEEEE-------TTEEEEESSTTSCCEEC
T ss_pred ---cCCC-cceeeEECCCCCEEEEEE-------CCeEEEEECCCCceEEE
Confidence 1121 111112222343334431 13577777776665554
No 311
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=66.85 E-value=18 Score=38.36 Aligned_cols=66 Identities=23% Similarity=0.300 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhh-------hhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007111 466 SIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSS-------VLKSRQEMEKKLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~lkek~~~~e 535 (617)
..-..|+.+++.. ..|.+-|++|.+...+||+++++ +....|+++.+|+..++|.+.+|-++++++
T Consensus 339 ~~Kki~naevae~----~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~ 411 (602)
T 1cii_A 339 GDKKIYNAEVAEW----DKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGIN 411 (602)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3345666665544 33447788888888888887663 466778888889999999988877776654
No 312
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=66.83 E-value=20 Score=39.02 Aligned_cols=41 Identities=32% Similarity=0.278 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHh-HHhhhcccccccCC
Q 007111 511 QEMEKKLADSLKEMELLKEKLAGLELA-QEEANSLSNIVHSD 551 (617)
Q Consensus 511 ~~~~~~~~~~~~~~~~lkek~~~~e~~-qe~~~~~~~~~~~~ 551 (617)
+++..++..+.+++..|++++..+|.. ++....|-|++|++
T Consensus 119 ~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~~~~~ 160 (501)
T 1wle_A 119 QSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQTHPD 160 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 344444444555555555555554433 25566799999985
No 313
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=66.52 E-value=18 Score=28.59 Aligned_cols=50 Identities=20% Similarity=0.291 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHH
Q 007111 508 KSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQK 571 (617)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (617)
....+++.|+++.-.--..+=.+||++|. +| .-|||++.-++.-+++.|.
T Consensus 21 sEI~EID~Ki~nL~~mR~ivldRlA~lEq--dE------------~~LE~~l~~i~~rle~~qe 70 (72)
T 2xu6_A 21 SEIRDIEVEVENLRQKKEKLLGKIANIEQ--NQ------------LMLEDNLKQIDDRLDFLEE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH------------HHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hH------------HHHHHHHHHHHHHHHHHHh
Confidence 45678899999877777788889999884 33 4689999988888888774
No 314
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=66.37 E-value=95 Score=31.32 Aligned_cols=71 Identities=6% Similarity=0.102 Sum_probs=36.8
Q ss_pred CCEEEEEecCCCCCccceEEEEECCCC--cEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEEC
Q 007111 209 GTKWYIAGGGSRKKRHAETLIFDILKG--EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 286 (617)
Q Consensus 209 ~~~IyI~GG~s~~~~~~~v~~yDl~~~--~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~ 286 (617)
++.+++.| .. ..+.+||+.+. .+..+...+...........++.+...+ ..+++.|+.++ .|.+||+
T Consensus 188 ~~~~l~s~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~s~~~dg----~i~iwd~ 256 (447)
T 3dw8_B 188 DYETYLSA-DD-----LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNS-CNTFVYSSSKG----TIRLCDM 256 (447)
T ss_dssp TSSEEEEE-CS-----SEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSC-TTEEEEEETTS----CEEEEET
T ss_pred CCCEEEEe-CC-----CeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCC-CcEEEEEeCCC----eEEEEEC
Confidence 45555655 32 35888998732 3333322111111122233444444322 25777888754 5888998
Q ss_pred CCCc
Q 007111 287 EKNE 290 (617)
Q Consensus 287 ~~~~ 290 (617)
.+..
T Consensus 257 ~~~~ 260 (447)
T 3dw8_B 257 RASA 260 (447)
T ss_dssp TTCS
T ss_pred cCCc
Confidence 7765
No 315
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=66.35 E-value=18 Score=38.46 Aligned_cols=67 Identities=13% Similarity=0.066 Sum_probs=34.3
Q ss_pred hhHhHHHHhhcHHHHhhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhH-HhhhcccccccCC
Q 007111 485 LEGQLAAALVNREAAEKNFSSV-LKSRQEMEKKLADSLKEMELLKEKLAGLELAQ-EEANSLSNIVHSD 551 (617)
Q Consensus 485 ~~~q~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~q-e~~~~~~~~~~~~ 551 (617)
+..++++..+.+-++.|.+... =+..+++.+++..+-+++..|++++..+|..- +..-.|-|++|++
T Consensus 40 ~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~ 108 (421)
T 1ses_A 40 LKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWPG 108 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 3444444455555555544320 01233444444444445555555555544332 4566799999986
No 316
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=65.53 E-value=14 Score=30.78 Aligned_cols=40 Identities=20% Similarity=0.426 Sum_probs=22.2
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHH
Q 007111 555 LEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRL 601 (617)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (617)
.|.+++-|+..++++..| ++-|..|+.. ||.++|.+|.+|
T Consensus 54 ye~~i~~Lr~~i~~~~~e----k~~l~~e~dn---l~~~~~~~k~KL 93 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTND----KARVEVERDN---LAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHH---HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHH---HHHHHHHHHhhC
Confidence 455555555555555443 4445555544 666666666664
No 317
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=65.24 E-value=97 Score=29.51 Aligned_cols=153 Identities=14% Similarity=0.173 Sum_probs=80.9
Q ss_pred eEEEEECCEEEEEcccCCCCCCceEEEEEECCCC-cEEEeecc--C-CCCCCcceeEEEE-ECCEEEEEeecCCCCCccC
Q 007111 50 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETE-CWSVVEAK--G-DIPVARSGHTVVR-ASSVLILFGGEDGKRRKLN 124 (617)
Q Consensus 50 hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~~--g-~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~ 124 (617)
-+++...+++|+|=|. .+|+++.... ........ . .+| ....++... .++++|+|-| +
T Consensus 34 DAi~~~~g~~~fFkg~--------~~Wr~~~~~~~~~~P~~I~~~wp~lp-~~IDAA~~~~~~~k~yfFkG--------~ 96 (218)
T 1gen_A 34 DGIAQIRGEIFFFKDR--------FIWRTVTPRDKPMGPLLVATFWPELP-EKIDAVYEAPQEEKAVFFAG--------N 96 (218)
T ss_dssp SEEEEETTEEEEEETT--------EEEEESSTTSCCEEEEEGGGTCTTSC-SCCSEEEEETTTTEEEEEET--------T
T ss_pred eEEEeCCCcEEEEECC--------EEEEEeCCCCccCCCEEHHHhcCCCC-CCccEEEEECCCCEEEEEeC--------C
Confidence 4566779999999774 5888876542 22222221 1 233 334444333 2579999954 4
Q ss_pred eEEEEECCCCc---EEEeecCCCCCCCC-cccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEE-----ee-cC
Q 007111 125 DLHMFDLKSLT---WLPLHCTGTGPSPR-SNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-----IK-IR 193 (617)
Q Consensus 125 ~v~~yD~~t~~---W~~l~~~g~~P~~R-~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~-----~~-~~ 193 (617)
..|+||-.+.. =+.+... .+|... .-.++..+ .+..+|+|-|. ..|+||..+.+-.. +. .-
T Consensus 97 ~yW~y~~~~~~~gyPk~I~~~-g~p~~~~~IDAAf~~~~~g~~YfFkG~-------~ywr~d~~~~~v~~gyPr~i~~~w 168 (218)
T 1gen_A 97 EYWIYSASTLERGYPKPLTSL-GLPPDVQRVDAAFNWSKNKKTYIFAGD-------KFWRYNEVKKKMDPGFPKLIADAW 168 (218)
T ss_dssp EEEEEETTEECTTCSEEGGGG-TCCTTCCCCSEEEEETTTTEEEEEETT-------EEEEEETTTTEECSSCCEEHHHHS
T ss_pred EEEEEcCccccCCCCccHhhc-CCCCCcCCccEEEEEcCCCeEEEEECC-------EEEEEECccccccCCCCcchhhcc
Confidence 68899852100 0111110 123211 11233333 33448999773 58999987664321 11 01
Q ss_pred CCCCCCCcceEEEEEC--CEEEEEecCCCCCccceEEEEECCCCc
Q 007111 194 GFHPSPRAGCCGVLCG--TKWYIAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 194 g~~P~~R~~ha~v~~~--~~IyI~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
. ..|..-.++...+ +.+|+|-| +..|+||.....
T Consensus 169 ~--g~p~~idaAf~~~~~g~~YfFkg-------~~y~~~~~~~~~ 204 (218)
T 1gen_A 169 N--AIPDNLDAVVDLQGGGHSYFFKG-------AYYLKLENQSLK 204 (218)
T ss_dssp S--SCCSSCSEEEECTTTCEEEEEET-------TEEEEEETTEEE
T ss_pred C--CCCCCCCEEEEEcCCCcEEEEEC-------CEEEEEECCcee
Confidence 1 1122233444444 89999977 358889876544
No 318
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=64.80 E-value=21 Score=30.12 Aligned_cols=33 Identities=30% Similarity=0.222 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhh
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKN 502 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~ 502 (617)
.--..+..|-.+....|+||..|.+-+..||+.
T Consensus 32 ~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~ 64 (107)
T 2k48_A 32 FTMSTLQELQENITAHEQQLVTARQKLKDAEKA 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888899999999999999999988873
No 319
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=64.64 E-value=59 Score=30.55 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=51.7
Q ss_pred chHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHh
Q 007111 465 SSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV----LKSRQEMEKKLADSLKEMELLKEKLAGLELAQEE 540 (617)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~ 540 (617)
.++-.-.++.+.++=.++..|..++.......+.+-.++... .+....|++.++...+..+.|+.+|-.+|.+..+
T Consensus 41 rELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDd 120 (189)
T 2v71_A 41 RELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDD 120 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 344455566666666666666666666655555554444333 2335667788888888888999999999988766
Q ss_pred hhc
Q 007111 541 ANS 543 (617)
Q Consensus 541 ~~~ 543 (617)
...
T Consensus 121 lEr 123 (189)
T 2v71_A 121 LER 123 (189)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 320
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=63.44 E-value=25 Score=37.44 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=36.2
Q ss_pred chHHHHHHHHHHHHHHHhc----------hhhHhHHHHhhcHHHHhhhhhhh----hhhHHHHHHHHHHHHHHHHHHH
Q 007111 465 SSIYQFYESKMAALIRKNG----------ILEGQLAAALVNREAAEKNFSSV----LKSRQEMEKKLADSLKEMELLK 528 (617)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~----------~~~~q~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~lk 528 (617)
++..+....++..+|.++. .|.+||+++....-++|+.-++. .-=...||+|++..++.+++|.
T Consensus 372 eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (471)
T 3mq9_A 372 DEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELE 449 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555554443 36777888777777777766553 2223456666665554444433
No 321
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=63.31 E-value=19 Score=30.18 Aligned_cols=16 Identities=25% Similarity=0.177 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 007111 511 QEMEKKLADSLKEMEL 526 (617)
Q Consensus 511 ~~~~~~~~~~~~~~~~ 526 (617)
.++|+.+..+..|+|.
T Consensus 43 ~~aE~~~~~ie~ElEe 58 (97)
T 2eqb_B 43 TKAEEEADKLNKEVED 58 (97)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333334433
No 322
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=63.23 E-value=1.1e+02 Score=29.42 Aligned_cols=177 Identities=8% Similarity=0.037 Sum_probs=0.0
Q ss_pred EEEecCCCCCccceEEEEECC-CCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEE
Q 007111 2 IVVGGESGNGLLDDVQVLNFD-RFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFD 79 (617)
Q Consensus 2 ~V~GG~~~~~~~~~v~~yd~~-t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd 79 (617)
+.+|...+. +++||+. ...|..... .....+.+.. ++.||+.... ..++.||
T Consensus 110 l~v~t~~~~-----l~~~d~~g~~~~~~~~~--------------~~~~~~~~~~~~g~l~vgt~~-------~~l~~~d 163 (330)
T 3hxj_A 110 LYVTSMDGH-----LYAINTDGTEKWRFKTK--------------KAIYATPIVSEDGTIYVGSND-------NYLYAIN 163 (330)
T ss_dssp EEEECTTSE-----EEEECTTSCEEEEEECS--------------SCCCSCCEECTTSCEEEECTT-------SEEEEEC
T ss_pred EEEEecCCE-----EEEEcCCCCEEEEEcCC--------------CceeeeeEEcCCCEEEEEcCC-------CEEEEEC
Q ss_pred CCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECC
Q 007111 80 TETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDD 159 (617)
Q Consensus 80 ~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~ 159 (617)
+. ..-.... ..+.......+...++.||+.. ..+++||.....-... ..+.......+..-++
T Consensus 164 ~~-g~~~~~~---~~~~~~~~~~~~d~~g~l~v~t---------~~l~~~d~~g~~~~~~----~~~~~~~~~~~~~~~g 226 (330)
T 3hxj_A 164 PD-GTEKWRF---KTNDAITSAASIGKDGTIYFGS---------DKVYAINPDGTEKWNF----YAGYWTVTRPAISEDG 226 (330)
T ss_dssp TT-SCEEEEE---ECSSCCCSCCEECTTCCEEEES---------SSEEEECTTSCEEEEE----CCSSCCCSCCEECTTS
T ss_pred CC-CCEeEEE---ecCCCceeeeEEcCCCEEEEEe---------CEEEEECCCCcEEEEE----ccCCcceeceEECCCC
Q ss_pred cEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCC-cEE
Q 007111 160 KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG-EWS 238 (617)
Q Consensus 160 ~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~-~W~ 238 (617)
. ||+.....+ +++||+.......... +.......+...++.||+.....+ +++||+... .|.
T Consensus 227 ~-l~v~t~~~g------l~~~~~~g~~~~~~~~----~~~~~~~~~~~~~g~l~v~t~~gg------l~~~d~~g~~~~~ 289 (330)
T 3hxj_A 227 T-IYVTSLDGH------LYAINPDGTEKWRFKT----GKRIESSPVIGNTDTIYFGSYDGH------LYAINPDGTEKWN 289 (330)
T ss_dssp C-EEEEETTTE------EEEECTTSCEEEEEEC----SSCCCSCCEECTTSCEEEECTTCE------EEEECTTSCEEEE
T ss_pred e-EEEEcCCCe------EEEECCCCCEeEEeeC----CCCccccceEcCCCeEEEecCCCC------EEEECCCCcEEEE
No 323
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=62.11 E-value=1.3e+02 Score=30.04 Aligned_cols=156 Identities=13% Similarity=0.016 Sum_probs=79.4
Q ss_pred CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCC
Q 007111 107 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETM 185 (617)
Q Consensus 107 ~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~ 185 (617)
++++.++++... -..+.++|+.+.+..... .. ... -..++.. +++ +++.|+. +.+.+++..++
T Consensus 144 Dg~~la~as~~~----d~~i~iwd~~~~~~~~~~-~~--~~~--V~~v~fspdg~-~l~s~s~------~~~~~~~~~~~ 207 (365)
T 4h5i_A 144 EGTVAAIASSKV----PAIMRIIDPSDLTEKFEI-ET--RGE--VKDLHFSTDGK-VVAYITG------SSLEVISTVTG 207 (365)
T ss_dssp TSSCEEEEESCS----SCEEEEEETTTTEEEEEE-EC--SSC--CCEEEECTTSS-EEEEECS------SCEEEEETTTC
T ss_pred CCCEEEEEECCC----CCEEEEeECCCCcEEEEe-CC--CCc--eEEEEEccCCc-eEEeccc------eeEEEEEeccC
Confidence 455554443222 245889999988755431 11 111 1233333 445 5555542 24788888877
Q ss_pred cEEEeecCCCCCCCCcce-EEEE-ECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecC
Q 007111 186 IWTRIKIRGFHPSPRAGC-CGVL-CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKE 263 (617)
Q Consensus 186 ~W~~~~~~g~~P~~R~~h-a~v~-~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~ 263 (617)
........ ....... +++. -++..++.++..+.. ...++.+|.....+....... .........++.+..
T Consensus 208 ~~~~~~~~---~~~~~~v~~v~fspdg~~l~~~s~d~~~-~~~i~~~~~~~~~~~~~~~~~--~~~~~~~V~~~~~Sp-- 279 (365)
T 4h5i_A 208 SCIARKTD---FDKNWSLSKINFIADDTVLIAASLKKGK-GIVLTKISIKSGNTSVLRSKQ--VTNRFKGITSMDVDM-- 279 (365)
T ss_dssp CEEEEECC---CCTTEEEEEEEEEETTEEEEEEEESSSC-CEEEEEEEEETTEEEEEEEEE--EESSCSCEEEEEECT--
T ss_pred cceeeeec---CCCCCCEEEEEEcCCCCEEEEEecCCcc-eeEEeecccccceecceeeee--ecCCCCCeEeEEECC--
Confidence 66544332 1111112 2222 277777777654321 124667776666554432100 001112234444443
Q ss_pred CcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 264 KDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 264 ~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
++.+++.|+.++ .|.+||..+.+
T Consensus 280 dg~~lasgs~D~----~V~iwd~~~~~ 302 (365)
T 4h5i_A 280 KGELAVLASNDN----SIALVKLKDLS 302 (365)
T ss_dssp TSCEEEEEETTS----CEEEEETTTTE
T ss_pred CCCceEEEcCCC----EEEEEECCCCc
Confidence 356788888764 58899988765
No 324
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=62.11 E-value=1.1e+02 Score=29.21 Aligned_cols=148 Identities=11% Similarity=0.059 Sum_probs=77.1
Q ss_pred ECCEEEEEcccCCCCCCceEEEEEEC------CCCcEEEeecc---CCCCC-----CcceeEEEEECCEEEEEeecCCCC
Q 007111 55 WGKKVLLVGGKTDSGSDRVSVWTFDT------ETECWSVVEAK---GDIPV-----ARSGHTVVRASSVLILFGGEDGKR 120 (617)
Q Consensus 55 ~g~~lyV~GG~~~~~~~~~~v~~yd~------~t~~W~~~~~~---g~~P~-----~R~~~s~~~~~~~IYv~GG~~~~~ 120 (617)
..+.+|+|-|. .+|+++. ........... ..+|. ....++....++.+|+|=|
T Consensus 12 ~~ge~~fFk~~--------~~wr~~~~~~~~~~~~~~~p~~I~~~Wp~LP~~~f~~~~iDAa~~~~~g~~~fFkg----- 78 (225)
T 3oyo_A 12 SEYEVYFFAKN--------KYVRLHYTPGASSDTILTNLRLISSGFPSLAGTPFAEPGIDCSFHTEASEAYVFSG----- 78 (225)
T ss_dssp STTEEEEEETT--------EEEEEECCTTCSCCEEEEEEEEHHHHCGGGTTSTTTTTCCSEEEECSTTEEEEEET-----
T ss_pred CCCEEEEEECC--------EEEEEecccccccCcccCCceehhhhcccCCCccCCCCCEeEEEEcCCCeEEEEcC-----
Confidence 37899999764 5888882 11112211111 12341 3334333235789999954
Q ss_pred CccCeEEEEECCCC----cEEEee--cC---CCCCCC----CcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCc
Q 007111 121 RKLNDLHMFDLKSL----TWLPLH--CT---GTGPSP----RSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMI 186 (617)
Q Consensus 121 ~~~~~v~~yD~~t~----~W~~l~--~~---g~~P~~----R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~ 186 (617)
+.+|+||..++ ....-+ .. ..+|.. ... ++... .+..+|+|-|. ..|+||..+.+
T Consensus 79 ---~~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~ID-AA~~~~~~gk~yfFkG~-------~yw~~d~~~~~ 147 (225)
T 3oyo_A 79 ---NHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSID-SAFRSTKGKEVYLFKGN-------KYVRIAYDSKQ 147 (225)
T ss_dssp ---TEEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCC-EEEECSSTTEEEEEETT-------EEEEEETTTTE
T ss_pred ---CEEEEEecccccCCCceecCchhhhhcCCCCCCcccccccc-eEEEECCCCcEEEEeCC-------eEEEEECCCCe
Confidence 45889976432 221100 00 123321 122 23232 23349999874 48999977665
Q ss_pred EEEe-ec-C-CCCCC-----CCcceEEEEE--CCEEEEEecCCCCCccceEEEEECC
Q 007111 187 WTRI-KI-R-GFHPS-----PRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDIL 233 (617)
Q Consensus 187 W~~~-~~-~-g~~P~-----~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~ 233 (617)
...- .. . +-+.. +..-.++... ++++|+|-| +..|+||..
T Consensus 148 ~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG-------~~ywr~d~~ 197 (225)
T 3oyo_A 148 LVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG-------QNYVRIDFT 197 (225)
T ss_dssp EEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET-------TEEEEEECC
T ss_pred ecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC-------CEEEEEeCC
Confidence 5431 00 0 00111 2223344443 789999988 458999987
No 325
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=61.91 E-value=1.3e+02 Score=29.87 Aligned_cols=65 Identities=9% Similarity=0.027 Sum_probs=36.4
Q ss_pred CCcEEEEEccCCCCCCCCe-EEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCC
Q 007111 158 DDKNLLIFGGSSKSKTLND-LYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKG 235 (617)
Q Consensus 158 ~~~~LyV~GG~~~~~~~n~-v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~ 235 (617)
++. +++.|+.++ . +..||+.++.....-..+.. ...-.+++.. ++.+++.|+.. ..+.+||+...
T Consensus 206 ~g~-~l~s~s~d~-----~~v~iwd~~~~~~~~~~~~g~h--~~~v~~~~~s~~~~~l~s~s~d-----~~v~iw~~~~~ 272 (355)
T 3vu4_A 206 KSD-MVATCSQDG-----TIIRVFKTEDGVLVREFRRGLD--RADVVDMKWSTDGSKLAVVSDK-----WTLHVFEIFND 272 (355)
T ss_dssp TSS-EEEEEETTC-----SEEEEEETTTCCEEEEEECTTC--CSCEEEEEECTTSCEEEEEETT-----CEEEEEESSCC
T ss_pred CCC-EEEEEeCCC-----CEEEEEECCCCcEEEEEEcCCC--CCcEEEEEECCCCCEEEEEECC-----CEEEEEEccCC
Confidence 445 777777763 4 88999987765433221111 1122233333 56777777654 34777887543
No 326
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=61.80 E-value=24 Score=38.27 Aligned_cols=41 Identities=22% Similarity=0.239 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhH-HhhhcccccccCC
Q 007111 511 QEMEKKLADSLKEMELLKEKLAGLELAQ-EEANSLSNIVHSD 551 (617)
Q Consensus 511 ~~~~~~~~~~~~~~~~lkek~~~~e~~q-e~~~~~~~~~~~~ 551 (617)
+++..+++.+.+++..|++++..+|..- +....|-|++|.+
T Consensus 74 ~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~ 115 (485)
T 3qne_A 74 KDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHES 115 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 4455555555555666666666554433 5677799999976
No 327
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=61.67 E-value=27 Score=28.01 Aligned_cols=56 Identities=23% Similarity=0.239 Sum_probs=35.1
Q ss_pred hchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 007111 482 NGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELA 537 (617)
Q Consensus 482 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~ 537 (617)
+++....|++.-...++..+-.+.+-...++|+..-++..+.++.||+|.+.++.|
T Consensus 20 ~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~ 75 (78)
T 3iv1_A 20 MDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSA 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555556666666667777778888888777654
No 328
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=61.52 E-value=15 Score=30.26 Aligned_cols=43 Identities=12% Similarity=0.205 Sum_probs=18.1
Q ss_pred HHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHH
Q 007111 474 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKK 516 (617)
Q Consensus 474 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (617)
+++.+-.+...|..+|+.....+...|.....++..+..|...
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444333333
No 329
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=60.77 E-value=24 Score=29.79 Aligned_cols=75 Identities=24% Similarity=0.244 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhccc--------cccc-CCCcchhhhHHHHHHHHHHHHHhhhhhccc
Q 007111 509 SRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLS--------NIVH-SDNVRLEHDVAFLKAVLDDTQKELHSTRGV 579 (617)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (617)
....+.+|+....+|-+.|++.++.+|..-|--. |. -|+| .+|+--+.. ...++++-
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~-l~Gd~~~~~TKVlH~~~NPa~~a~--------~~~~~~~e----- 78 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRA-LQGDYDQSRTKVLHMSLNPTSVAR--------QRLREDHS----- 78 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CCSCCCTTTEEEEEESSCHHHHHH--------HHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccccCCccCeeeeecCChHHHHH--------HHHHHHHH-----
Confidence 4566788888899999999999999987665522 21 1233 344432211 11112111
Q ss_pred hhhhccccccchhhHHHHHHHHhhhhc
Q 007111 580 LAGERARAFQLQVEVFHLKQRLQSLEN 606 (617)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (617)
+||.|+..||.++..||.
T Consensus 79 ---------~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 79 ---------QLQAECERLRGLLRAMER 96 (100)
T ss_dssp ---------HHHHHHHHHHHHHTTCC-
T ss_pred ---------HHHHHHHHHHHHHHHHhc
Confidence 588899999999999996
No 330
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=60.65 E-value=1.6e+02 Score=30.40 Aligned_cols=151 Identities=13% Similarity=0.052 Sum_probs=82.3
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
+++||+.... ...+.+||+.++.-..+...+. ..+ ++.. ++.+|+.... .. ..+++||+.+
T Consensus 141 ~g~lyv~d~~------~~~I~~id~~~g~~~~~~~~~~-----~~~-ia~~~~g~~l~~~d~~-~~----~~I~~~d~~~ 203 (409)
T 3hrp_A 141 NNTVLAYQRD------DPRVRLISVDDNKVTTVHPGFK-----GGK-PAVTKDKQRVYSIGWE-GT----HTVYVYMKAS 203 (409)
T ss_dssp TTEEEEEETT------TTEEEEEETTTTEEEEEEETCC-----BCB-CEECTTSSEEEEEBSS-TT----CEEEEEEGGG
T ss_pred CCCEEEEecC------CCcEEEEECCCCEEEEeeccCC-----CCc-eeEecCCCcEEEEecC-CC----ceEEEEEcCC
Confidence 5789998653 2369999999887766653211 122 2222 3466665432 11 2799999875
Q ss_pred Cc-EEEeecCCCCCCCCcccEEEEEC-CcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc-e-EEEEE-
Q 007111 134 LT-WLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-C-CGVLC- 208 (617)
Q Consensus 134 ~~-W~~l~~~g~~P~~R~~h~a~~~~-~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~-h-a~v~~- 208 (617)
.. ...+..... +....-+.+++.. +..||+..+ ...+++||+.+.....+...+........ + .++..
T Consensus 204 ~~~~~~~g~~~~-~~~~~p~~iav~p~~g~lyv~d~------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p 276 (409)
T 3hrp_A 204 GWAPTRIGQLGS-TFSGKIGAVALDETEEWLYFVDS------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYF 276 (409)
T ss_dssp TTCEEEEEECCT-TSCSCCCBCEECTTSSEEEEECT------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEET
T ss_pred CceeEEeeeccc-hhcCCcEEEEEeCCCCeEEEEEC------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeC
Confidence 43 233310001 0112223344443 455888432 23699999988876655322111111222 1 44444
Q ss_pred -CCEEEEEecCCCCCccceEEEEECCCC
Q 007111 209 -GTKWYIAGGGSRKKRHAETLIFDILKG 235 (617)
Q Consensus 209 -~~~IyI~GG~s~~~~~~~v~~yDl~~~ 235 (617)
++.+|+..... ..+++|++...
T Consensus 277 ~~g~lyv~d~~~-----~~I~~~~~~g~ 299 (409)
T 3hrp_A 277 VDSNFYMSDQNL-----SSVYKITPDGE 299 (409)
T ss_dssp TTTEEEEEETTT-----TEEEEECTTCC
T ss_pred CCCEEEEEeCCC-----CEEEEEecCCC
Confidence 58999985432 46899998765
No 331
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=60.48 E-value=1.6e+02 Score=30.38 Aligned_cols=16 Identities=25% Similarity=0.025 Sum_probs=12.0
Q ss_pred ceEEEEE-CCEEEEEec
Q 007111 202 GCCGVLC-GTKWYIAGG 217 (617)
Q Consensus 202 ~ha~v~~-~~~IyI~GG 217 (617)
.|+++.. ++.+|.+|-
T Consensus 287 ~hs~alt~~G~v~~wG~ 303 (406)
T 4d9s_A 287 RHTMALTSDGKLYGWGW 303 (406)
T ss_dssp SEEEEEETTSCEEEEEC
T ss_pred CEEEEEcCCCeEEEeeC
Confidence 4677665 779999983
No 332
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=60.47 E-value=5.3 Score=32.23 Aligned_cols=35 Identities=17% Similarity=0.141 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhhcc
Q 007111 559 VAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLENR 607 (617)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (617)
|.-|+.|+-+-|+++. .||-.|..|.+||++++..
T Consensus 30 IeeLn~~v~~Qq~~Id--------------~L~~ql~~L~~rl~~~~~~ 64 (78)
T 3efg_A 30 LTELSEALADARLTGA--------------RNAELIRHLLEDLGKVRST 64 (78)
T ss_dssp HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhhc
Confidence 4456666666677665 3667888999999999854
No 333
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=60.22 E-value=29 Score=28.32 Aligned_cols=54 Identities=11% Similarity=0.134 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Q 007111 471 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEM 524 (617)
Q Consensus 471 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (617)
...++-.+...++.|+.|++-+....+.-..+.-.-+.-|+.+|.-+...-|++
T Consensus 5 Lr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~Lrkdv 58 (86)
T 3swk_A 5 LRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDV 58 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 345667777888888888888776666665565555666777776665544444
No 334
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=59.60 E-value=2.4e+02 Score=32.12 Aligned_cols=258 Identities=10% Similarity=0.121 Sum_probs=122.7
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEEC---CEEEEEcccCCCCCCceEEEEEECCCCcEEEeecc
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWG---KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 91 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g---~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 91 (617)
.+++-+-...+|..+.... .+ .....+..++++... +.+|+..|...... ...+++=+-.-.+|+.+...
T Consensus 38 gv~rS~DgG~tW~~~~~~~--~~----~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~-~~~v~~S~DgG~TW~~~~~~ 110 (789)
T 1sqj_A 38 GAYRWDAGTSKWIPLNDFI--EA----QDMNIMGTESIALDPNNPDRLYLAQGRYVGDE-WAAFYVSEDRGQSFTIYESP 110 (789)
T ss_dssp CEEEEETTTTEEEESCTTC--CG----GGGGGCSEEEEEEETTEEEEEEEEECSCTTSS-CCEEEEESSTTSEEEEEECS
T ss_pred CEEEecCCCCCeeECccCC--Cc----ccccCCceeEEEECCCCCCEEEEEeCccCCCc-ccEEEEECCCCCcceeccCC
Confidence 3677777778899876410 00 000112234454432 46888766421111 14566655566789998642
Q ss_pred CCCC---CCc-ceeEEEEE---CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCC---CCCcccEEEEE---C
Q 007111 92 GDIP---VAR-SGHTVVRA---SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP---SPRSNHVAALY---D 158 (617)
Q Consensus 92 g~~P---~~R-~~~s~~~~---~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P---~~R~~h~a~~~---~ 158 (617)
...+ +.| ..+.+++. .+.+|+ |... ..+++=+-.-.+|+++. .+| ..-.+...+.+ +
T Consensus 111 ~~~~~~~~~~~~~~~iav~p~~~~~v~~-g~~~------~gl~~S~DgG~TW~~~~---~~~~~~~~~~~~~~i~~~p~~ 180 (789)
T 1sqj_A 111 FPMGANDMGRNNGERLAVNPFNSNEVWM-GTRT------EGIWKSSDRAKTWTNVT---SIPDAFTNGIGYTSVIFDPER 180 (789)
T ss_dssp SCCCTTSTTTTSCCCEEEETTEEEEEEE-ECSS------SCEEEESSTTSSCEEET---TSCCCCSTTTCEEEEEECTTS
T ss_pred cccCccCCCccceeEEEEcCCCCCEEEE-Eecc------CCEEEECCCCcccCCCc---cCccccCCCCCeEEEEECCCC
Confidence 1111 123 22334443 245665 3321 23554333456899885 222 11122333333 2
Q ss_pred CcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCC---------CC----CCCcceEEEEE--CCEEEEEecCCC---
Q 007111 159 DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGF---------HP----SPRAGCCGVLC--GTKWYIAGGGSR--- 220 (617)
Q Consensus 159 ~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~---------~P----~~R~~ha~v~~--~~~IyI~GG~s~--- 220 (617)
...+|+..... ..+++=.=.-.+|+.+...+. .| ...+.|.++.. ++.+|+..+...
T Consensus 181 ~~~~~~~~~~~-----~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~p~ 255 (789)
T 1sqj_A 181 NGTIYASATAP-----QGMYVTHDGGVSWEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPGPW 255 (789)
T ss_dssp TTCEEEEESST-----TCEEEESSTTSSCEECTTCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCSSS
T ss_pred CCEEEEEEcCC-----CeEEEEcCCCcCcccCCCCcCccccccccccCcccccccccceeEEcCCCCeEEEEEecCCCCC
Confidence 33366654321 224443334568998763211 00 01111444443 788998853211
Q ss_pred CCccceEEEEECCCCcEEEeecCCCC-CCCC----Cc---ceEEEEEeecCCcEEEEEcCCCC-C-CCCeEEEEECCCCc
Q 007111 221 KKRHAETLIFDILKGEWSVAITSPSS-SVTS----NK---GFTLVLVQHKEKDFLVAFGGIKK-E-PSNQVEVLSIEKNE 290 (617)
Q Consensus 221 ~~~~~~v~~yDl~~~~W~~l~~~~~~-~p~~----r~---~~s~v~v~~~~~~~L~I~GG~~~-~-~~~dV~vyd~~~~~ 290 (617)
......+++.+-...+|+.+...+.. .|.+ .. ++..+.+...+.+.||+.++... + ....+++-.-....
T Consensus 256 ~g~~g~l~~S~DgG~tW~~~~~~~~~~~p~~~~~~~~~~~g~~~lav~p~~~~~v~~~~~~~~~~~~~~~l~~S~DgG~t 335 (789)
T 1sqj_A 256 GVTFGEVWRQNRTSGAWDDITPRVGNSSPAPYNNQTFPAGGFCGLSVDATNPNRLVVITLDRDPGPALDSIYLSTDAGAT 335 (789)
T ss_dssp CCCCCCEEEEETTTCCEEECCCCTTTEESCCCSSCCSCCCEEEEEEEETTEEEEEEEEEECCCSCSSCCCEEEESSTTSS
T ss_pred CCCCceEEEEeCCCCceEECcCCCCccccccccccccccCceEEEEECCCCCCEEEEEEeccCCCcccccEEEecCCCCC
Confidence 01234688888888899998642211 0111 22 44455554333456777765321 0 01345555444556
Q ss_pred cccc
Q 007111 291 SSMG 294 (617)
Q Consensus 291 W~~~ 294 (617)
|...
T Consensus 336 W~~~ 339 (789)
T 1sqj_A 336 WKDV 339 (789)
T ss_dssp EEEH
T ss_pred ceeC
Confidence 6544
No 335
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=59.31 E-value=88 Score=33.39 Aligned_cols=151 Identities=12% Similarity=0.100 Sum_probs=75.2
Q ss_pred EEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecC---CCCCCCCcccEEEEE--CCcEEEEEccCCCCCCCCe
Q 007111 102 TVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT---GTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLND 176 (617)
Q Consensus 102 s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~---g~~P~~R~~h~a~~~--~~~~LyV~GG~~~~~~~n~ 176 (617)
+++..++.+|+|-|. -+|+++.....+...... ..+|.. .. ++... +++ +|+|=|. .
T Consensus 267 Ai~~~~ge~y~Fkg~--------~~wr~~~~~~~~~p~~I~~~Wp~LP~~-iD-Aa~~~~~~g~-~~fFKg~-------~ 328 (450)
T 1su3_A 267 AITTIRGEVMFFKDR--------FYMRTNPFYPEVELNFISVFWPQLPNG-LE-AAYEFADRDE-VRFFKGN-------K 328 (450)
T ss_dssp EEEEETTEEEEEETT--------EEEECCTTSSSCEEEEGGGTCTTSCSS-CC-EEEEEGGGTE-EEEEETT-------E
T ss_pred eEEecCCeEEEEeCC--------EEEEEcCCCCcccceehhHhccCCCCC-ee-EEEEEcCCCe-EEEEeCC-------E
Confidence 455688999999653 345555444333322111 123432 22 23333 456 8888764 3
Q ss_pred EEEEECCCC--cE-EEee-cCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEE-----Eee-cCC
Q 007111 177 LYSLDFETM--IW-TRIK-IRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWS-----VAI-TSP 244 (617)
Q Consensus 177 v~~yD~~t~--~W-~~~~-~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~-----~l~-~~~ 244 (617)
+|+|+..+. .+ ..+. ..+-+..+..--++... ++++|+|-| +..|+||.....-. .+. .-+
T Consensus 329 ~W~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG-------~~yw~yd~~~~~~~~gYPk~I~~~fp 401 (450)
T 1su3_A 329 YWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA-------NKYWRYDEYKRSMDPGYPKMIAHDFP 401 (450)
T ss_dssp EEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCSEEHHHHST
T ss_pred EEEecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCC
Confidence 788874321 01 1111 11211112112233333 689999987 46999997654311 111 001
Q ss_pred CCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 245 SSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 245 ~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
. .| .. .-++... ++.+|+|-|. ..|+||..+..
T Consensus 402 g-ip-~~--iDAA~~~---~g~~YFFkg~------~ywr~d~~~~~ 434 (450)
T 1su3_A 402 G-IG-HK--VDAVFMK---DGFFYFFHGT------RQYKFDPKTKR 434 (450)
T ss_dssp T-SC-SC--CSEEEEE---TTEEEEEETT------EEEEEETTTTE
T ss_pred C-CC-CC--ccEEEEc---CCeEEEEeCC------EEEEEECCcce
Confidence 1 11 11 2222222 4778888775 67999987655
No 336
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=59.08 E-value=1.6e+02 Score=30.13 Aligned_cols=164 Identities=12% Similarity=0.064 Sum_probs=85.9
Q ss_pred CCEEEEEcccCCCC------CCceEEEEEECCC--CcEEEeeccCC-CC-CCcceeEEEEEC---C--EEEEEeecCCCC
Q 007111 56 GKKVLLVGGKTDSG------SDRVSVWTFDTET--ECWSVVEAKGD-IP-VARSGHTVVRAS---S--VLILFGGEDGKR 120 (617)
Q Consensus 56 g~~lyV~GG~~~~~------~~~~~v~~yd~~t--~~W~~~~~~g~-~P-~~R~~~s~~~~~---~--~IYv~GG~~~~~ 120 (617)
.+.+|+--|.-.++ .....+++||+.+ .+-..+..++. .. ..-..|.+.... + +|||+.-....
T Consensus 60 ~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~- 138 (355)
T 3sre_A 60 NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSS- 138 (355)
T ss_dssp TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTC-
T ss_pred CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCC-
Confidence 46777765432211 1244799999983 45666665542 22 233456665532 3 67777543222
Q ss_pred CccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccC--CC----------CCCCCeEEEEECCCCcEE
Q 007111 121 RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGS--SK----------SKTLNDLYSLDFETMIWT 188 (617)
Q Consensus 121 ~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~--~~----------~~~~n~v~~yD~~t~~W~ 188 (617)
..-.++.+|+.+....-+......+..+..-..+.-++. +|+-+.. +. ......+|+||+. +.+
T Consensus 139 -s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~ 214 (355)
T 3sre_A 139 -STVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVR 214 (355)
T ss_dssp -CEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCE
T ss_pred -CeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEECC--eEE
Confidence 234567777776666555322223444445455555666 7776532 11 1234579999984 444
Q ss_pred EeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCC
Q 007111 189 RIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILK 234 (617)
Q Consensus 189 ~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~ 234 (617)
.+... .... -.++.- +..+|+.--. ...+++|++..
T Consensus 215 ~~~~~----l~~p-NGia~spDg~~lYvadt~-----~~~I~~~~~~~ 252 (355)
T 3sre_A 215 VVAEG----FDFA-NGINISPDGKYVYIAELL-----AHKIHVYEKHA 252 (355)
T ss_dssp EEEEE----ESSE-EEEEECTTSSEEEEEEGG-----GTEEEEEEECT
T ss_pred EeecC----Cccc-CcceECCCCCEEEEEeCC-----CCeEEEEEECC
Confidence 44321 1111 123332 4478887432 25689999764
No 337
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=57.91 E-value=47 Score=28.04 Aligned_cols=33 Identities=12% Similarity=0.246 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhh
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEK 501 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~ 501 (617)
+.+..++..+......|+.|+..+....++.+.
T Consensus 16 ~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~ 48 (117)
T 2zqm_A 16 ESYQQQLQLVVQQKQKVQLELTEAKKALDEIES 48 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 556666777777777777777665555555443
No 338
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=57.06 E-value=55 Score=27.09 Aligned_cols=68 Identities=18% Similarity=0.307 Sum_probs=35.9
Q ss_pred hHhHHHHhhcHHHHhhhhh----hhhhhHHHHHHHHHH-------HHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcc
Q 007111 486 EGQLAAALVNREAAEKNFS----SVLKSRQEMEKKLAD-------SLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVR 554 (617)
Q Consensus 486 ~~q~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-------~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~ 554 (617)
-|-++.+.++-.||=.+-| .-++.-|+-+.+|-+ -.+||-.+.-|++.+ -+-|.-
T Consensus 29 ig~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaL--------------lsk~yh 94 (114)
T 2xzr_A 29 IGAIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEI--------------LSKIYH 94 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred HhhhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--------------HHHhhH
Confidence 3445555555555544322 224455555544443 333443343344333 234567
Q ss_pred hhhhHHHHHHHHH
Q 007111 555 LEHDVAFLKAVLD 567 (617)
Q Consensus 555 ~~~~~~~~~~~~~ 567 (617)
+|.|||-||..+.
T Consensus 95 ~ene~ar~kkl~~ 107 (114)
T 2xzr_A 95 IENEIARIKKLIK 107 (114)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998753
No 339
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=56.56 E-value=15 Score=39.04 Aligned_cols=68 Identities=18% Similarity=0.280 Sum_probs=35.5
Q ss_pred hhhHhHHHHhhcHHHHhhhhhhhhh---hHHHHHHHHHHHHHHHHHHHHHHhhhHHh-HHhhhcccccccCC
Q 007111 484 ILEGQLAAALVNREAAEKNFSSVLK---SRQEMEKKLADSLKEMELLKEKLAGLELA-QEEANSLSNIVHSD 551 (617)
Q Consensus 484 ~~~~q~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~lkek~~~~e~~-qe~~~~~~~~~~~~ 551 (617)
.+..++++..+.+-++.|......+ ..+++..++..+-+++..|++++..+|.. ++..-.|-|++|++
T Consensus 41 ~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~ 112 (425)
T 2dq3_A 41 EIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNLPHPS 112 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 3444445555555555554433222 23334444444445555555555554433 35567799999985
No 340
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=56.39 E-value=2.8e+02 Score=31.95 Aligned_cols=194 Identities=7% Similarity=0.015 Sum_probs=94.2
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 135 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~ 135 (617)
++.+++.|+.+ ..+.+||..+..-.... +....-.+++...+.+++.|+.+ ..+.++|+.+.+
T Consensus 28 dg~~lAsgs~D------g~I~lw~~~~~~~~~~~-----~~~~~V~~l~fspg~~L~S~s~D------~~v~lWd~~~~~ 90 (902)
T 2oaj_A 28 TQNLLAIATVT------GEVHIYGQQQVEVVIKL-----EDRSAIKEMRFVKGIYLVVINAK------DTVYVLSLYSQK 90 (902)
T ss_dssp TTTEEEEEETT------SEEEEECSTTCEEEEEC-----SSCCCEEEEEEETTTEEEEEETT------CEEEEEETTTCS
T ss_pred CCCEEEEEeCC------CEEEEEeCCCcEEEEEc-----CCCCCEEEEEEcCCCEEEEEECc------CeEEEEECCCCc
Confidence 45666677653 25777776655432221 11111122333335555555543 358899998876
Q ss_pred EEEeecCCCCCCCCcccEEEEE--CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCC-----CCCCC--CcceEEE
Q 007111 136 WLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRG-----FHPSP--RAGCCGV 206 (617)
Q Consensus 136 W~~l~~~g~~P~~R~~h~a~~~--~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g-----~~P~~--R~~ha~v 206 (617)
-...- ..+ . .-.++.+ ++. .++.|+.++ .|..||+.+.......... ..+.. ..-.+++
T Consensus 91 ~~~~~---~~~-~--~V~~v~~sp~g~-~l~sgs~dg-----~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~ 158 (902)
T 2oaj_A 91 VLTTV---FVP-G--KITSIDTDASLD-WMLIGLQNG-----SMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQ 158 (902)
T ss_dssp EEEEE---ECS-S--CEEEEECCTTCS-EEEEEETTS-----CEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEE
T ss_pred EEEEE---cCC-C--CEEEEEECCCCC-EEEEEcCCC-----cEEEEECCCCccccceeccccccccccccCCCCeEEEE
Confidence 43221 111 1 1122222 345 666776654 4899999887754222100 00111 1112344
Q ss_pred EEC--CEEEEEecCCCCCccceEEEEECCCCcEEEeecCC--CCCCC---------C-CcceEEEEEeecCCcEEEEEcC
Q 007111 207 LCG--TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSP--SSSVT---------S-NKGFTLVLVQHKEKDFLVAFGG 272 (617)
Q Consensus 207 ~~~--~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~--~~~p~---------~-r~~~s~v~v~~~~~~~L~I~GG 272 (617)
... ..++++|+.. ..+ ++|+.+..-...-... ...+. . ......+.+..+ +.+++.|+
T Consensus 159 ~sp~~~~~l~~g~~d-----g~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd--g~~lasgs 230 (902)
T 2oaj_A 159 WNPRDIGTVLISYEY-----VTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN--SLHIITIH 230 (902)
T ss_dssp EETTEEEEEEEECSS-----CEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT--SSEEEEEE
T ss_pred EccCCCCEEEEEeCC-----CcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC--CCEEEEEE
Confidence 443 3566666543 347 8999887644322111 00010 0 112344444432 45677887
Q ss_pred CCCCCCCeEEEEECCCCc
Q 007111 273 IKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 273 ~~~~~~~dV~vyd~~~~~ 290 (617)
.++ .|.+||+.+.+
T Consensus 231 ~Dg----~i~lWd~~~g~ 244 (902)
T 2oaj_A 231 EDN----SLVFWDANSGH 244 (902)
T ss_dssp TTC----CEEEEETTTCC
T ss_pred CCC----eEEEEECCCCc
Confidence 764 57888886654
No 341
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=55.91 E-value=32 Score=27.58 Aligned_cols=29 Identities=14% Similarity=0.157 Sum_probs=23.3
Q ss_pred HHHHHHHHhchhhHhHHHHhhcHHHHhhh
Q 007111 474 KMAALIRKNGILEGQLAAALVNREAAEKN 502 (617)
Q Consensus 474 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~ 502 (617)
.+..|-.+....|+||..|..-+..|++.
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~ 34 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERA 34 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677788899999999999888873
No 342
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=55.54 E-value=78 Score=26.87 Aligned_cols=6 Identities=33% Similarity=0.650 Sum_probs=2.2
Q ss_pred HHHHHH
Q 007111 562 LKAVLD 567 (617)
Q Consensus 562 ~~~~~~ 567 (617)
||.-++
T Consensus 73 lq~~l~ 78 (107)
T 2no2_A 73 LQGSLE 78 (107)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 343
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=55.52 E-value=30 Score=30.36 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 007111 468 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMEL 526 (617)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (617)
....+.....|+.+...|+.+|.++...++.-|...+.+...+..|+..+.+.-++++.
T Consensus 64 l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 64 LADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777888999999999999999888888887776666666666555554444443
No 344
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=55.38 E-value=1e+02 Score=28.81 Aligned_cols=110 Identities=10% Similarity=0.016 Sum_probs=58.7
Q ss_pred EEEEECCcEEEEEccCCCCCCCCeEEEEECCC--CcEEEeec---CCCCCCCCcceEEEEE--CCEEEEEecCCCCCccc
Q 007111 153 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFET--MIWTRIKI---RGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHA 225 (617)
Q Consensus 153 ~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t--~~W~~~~~---~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~ 225 (617)
+++...++ +|+|=|. .+|+++... ........ -+.+|... -|+... ++++|+|-| +
T Consensus 11 Ai~~~~g~-~yfFkg~-------~~Wr~~~~~~~~~~~p~~Is~~w~glP~~I--DAa~~~~~~~~~yfFkG-------~ 73 (195)
T 1itv_A 11 AIAEIGNQ-LYLFKDG-------KYWRFSEGRGSRPQGPFLIADKWPALPRKL--DSVFEEPLSKKLFFFSG-------R 73 (195)
T ss_dssp EEEEETTE-EEEEETT-------EEEEECCSSSCCCEEEEEHHHHCTTSCSSC--SEEEECTTTCCEEEEET-------T
T ss_pred EEEEeCCE-EEEEECC-------EEEEEECCccccCCCcEEhhhccCCCCCCc--cEEEEECCCCeEEEEeC-------C
Confidence 34456777 8888764 388887754 23332222 12234322 233333 688999988 4
Q ss_pred eEEEEECCCCcE-EEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 226 ETLIFDILKGEW-SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 226 ~v~~yDl~~~~W-~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
..|+|+..+..- ..+... ..|......-+++. ...+++|+|-|. ..|+||..++
T Consensus 74 ~yw~~~~~~~~~Pk~i~~~--G~p~~~~~iDAA~~--~~~g~~yfFkg~------~ywr~d~~~~ 128 (195)
T 1itv_A 74 QVWVYTGASVLGPRRLDKL--GLGADVAQVTGALR--SGRGKMLLFSGR------RLWRFDVKAQ 128 (195)
T ss_dssp EEEEEETTEEEEEEEGGGG--TCCTTCCCCCEEEE--CSTTEEEEEETT------EEEEEETTTT
T ss_pred EEEEEcCCccCCCEEeeec--ccCCCccceeEEEE--cCCCeEEEEeCC------EEEEEeCCcc
Confidence 588888643111 111110 11111112333333 234778888774 6899998764
No 345
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=54.86 E-value=32 Score=31.04 Aligned_cols=66 Identities=29% Similarity=0.232 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e 535 (617)
..+.+...-=-+-..|+.||..|...-+.|+.+..-|-+--..++..|..+..-.+....|+..+|
T Consensus 42 ~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLE 107 (147)
T 2b9c_A 42 VIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELE 107 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444556778999999999999999887555544444455555555555555555555444
No 346
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=54.77 E-value=24 Score=31.31 Aligned_cols=82 Identities=21% Similarity=0.103 Sum_probs=47.0
Q ss_pred HHHHhchhhHhHHHHhhcHHHHhhhhhhhhhh--------HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhccccccc
Q 007111 478 LIRKNGILEGQLAAALVNREAAEKNFSSVLKS--------RQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVH 549 (617)
Q Consensus 478 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~ 549 (617)
.-.+...|..+|....+.+.+||+.+.-+=+- .+++.+.+|+.-++...+++|+.-++..=.|...+=.
T Consensus 44 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~--- 120 (135)
T 2e7s_A 44 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLD--- 120 (135)
T ss_dssp HHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 55566777888888888888888866543211 3566678888888888888888887765445443311
Q ss_pred CCCcchhhhHHHHHHHH
Q 007111 550 SDNVRLEHDVAFLKAVL 566 (617)
Q Consensus 550 ~~~~~~~~~~~~~~~~~ 566 (617)
+++..++-||.|+
T Consensus 121 ----~lq~QL~~LK~v~ 133 (135)
T 2e7s_A 121 ----TLTLQLKNLKKVM 133 (135)
T ss_dssp -----------------
T ss_pred ----HHHHHHHHHHHHh
Confidence 1345556666655
No 347
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=54.12 E-value=2.7e+02 Score=31.19 Aligned_cols=143 Identities=10% Similarity=0.016 Sum_probs=72.4
Q ss_pred ceEEEEEECCCCc--EEEeeccCCCCCCcceeEEEE-ECC-EEEEEeecCCCCCccCeEEEEECCCC--cE--EEeecCC
Q 007111 72 RVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVR-ASS-VLILFGGEDGKRRKLNDLHMFDLKSL--TW--LPLHCTG 143 (617)
Q Consensus 72 ~~~v~~yd~~t~~--W~~~~~~g~~P~~R~~~s~~~-~~~-~IYv~GG~~~~~~~~~~v~~yD~~t~--~W--~~l~~~g 143 (617)
...+|++++.+.. -..+-. .+.......... -++ .|++..... ..+++|++|+.+. .+ ..+..
T Consensus 246 ~~~v~~~~lgt~~~~~~lv~~---~~~~~~~~~~~~SpDg~~l~~~~~~~----~~~~l~~~d~~~~~~~~~~~~l~~-- 316 (751)
T 2xe4_A 246 ENKVWRHVMGKLQSEDVCLYE---EHNPLFSAFMYKAADTNTLCIGSQSP----ETAEVHLLDLRKGNAHNTLEIVRP-- 316 (751)
T ss_dssp EEEEEEEETTSCGGGCEEEEE---CCCTTCEEEEEECTTSSEEEEEEECS----SCEEEEEEESSSCTTCCCEEESSC--
T ss_pred CCEEEEEECCCCchhcEEEEe---cCCCceEEEEEECCCCCEEEEEecCC----CCceEEEEECCCCCCCceeEEeec--
Confidence 3578988887753 112211 122222222222 234 555554322 2468999999875 46 65531
Q ss_pred CCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCC-CcEEE-eecCCCCCCCCcceEEEEECCEEEEEecCCCC
Q 007111 144 TGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET-MIWTR-IKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK 221 (617)
Q Consensus 144 ~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t-~~W~~-~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~ 221 (617)
....+. +......+..||+..-.+ ......++.+|+.+ ..|.. +... ............++.+|+..-..+
T Consensus 317 ~~~~~~--~s~~~~~g~~l~~~t~~~-~a~~~~L~~~d~~~~~~~~~~li~~---~~~~~l~~~~~~~~~lv~~~~~~g- 389 (751)
T 2xe4_A 317 REKGVR--YDVQMHGTSHLVILTNEG-GAVNHKLLIAPRGQPSDWSHVLVDH---SEDVFMESIAVRSNYLVVAGRRAG- 389 (751)
T ss_dssp CCTTCC--EEEEEETTTEEEEEECTT-TCTTCEEEEEETTSTTCCCCEEECC---CSSEEEEEEEECSSEEEEEEEETT-
T ss_pred CCCCce--EEEeeeeCCEEEEEeCCC-CCCCcEEEEEcCCCcccceeeEECC---CCCcEEEEEEEECCEEEEEEEeCC-
Confidence 111111 122213355477776544 12235799999876 67876 4332 111111233344777777654332
Q ss_pred CccceEEEEEC
Q 007111 222 KRHAETLIFDI 232 (617)
Q Consensus 222 ~~~~~v~~yDl 232 (617)
...++++|+
T Consensus 390 --~~~l~~~dl 398 (751)
T 2xe4_A 390 --LTRIWTMMA 398 (751)
T ss_dssp --EEEEEEEEC
T ss_pred --EEEEEEEec
Confidence 356889986
No 348
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=53.80 E-value=3e+02 Score=31.48 Aligned_cols=190 Identities=10% Similarity=0.066 Sum_probs=102.0
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCC----cEEEeeccCCCCCCcceeEEEE--ECCEEEEEeecCCCCCccCeEEEE
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETE----CWSVVEAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMF 129 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~----~W~~~~~~g~~P~~R~~~s~~~--~~~~IYv~GG~~~~~~~~~~v~~y 129 (617)
+++||+.-.. ...++++++... .+..+... .......+++ .++.||+.-. ....|+++
T Consensus 435 ~~~lY~sD~~------~~~I~~~~l~g~~~~~~~~~vi~~----~l~~P~GLAvD~~~~~LY~tD~------~~~~I~v~ 498 (791)
T 3m0c_C 435 SNRIYWSDLS------QRMICSTQLDRAHGVSSYDTVISR----DIQAPDGLAVDWIHSNIYWTDS------VLGTVSVA 498 (791)
T ss_dssp TTEEEEEETT------TTEEEEEEC--------CEEEECS----SCSCCCEEEEETTTTEEEEEET------TTTEEEEE
T ss_pred CCeeEEeecc------ceeEEEEeccCCCCCcceeEEEec----CCCCcceeeeeecCCcEEEEec------CCCeEEEE
Confidence 5789988543 136888887652 22233210 1122233444 3679998742 24679999
Q ss_pred ECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEc-cCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE
Q 007111 130 DLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFG-GSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL 207 (617)
Q Consensus 130 D~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~G-G~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~ 207 (617)
++....-+.+- ...+..|+ ++++. .+..||+.- |. ...|+++++....-..+... .+..| .++++
T Consensus 499 ~ldG~~~~~l~-~~~l~~P~---gIaVDp~~g~LYwtD~g~-----~~~I~~~~~dG~~~~~lv~~-~l~~P---~GLav 565 (791)
T 3m0c_C 499 DTKGVKRKTLF-RENGSKPR---AIVVDPVHGFMYWTDWGT-----PAKIKKGGLNGVDIYSLVTE-NIQWP---NGITL 565 (791)
T ss_dssp ETTSSSEEEEE-ECTTCCEE---EEEEETTTTEEEEEECSS-----SCEEEEEETTSCCEEEEECS-SCSCE---EEEEE
T ss_pred eCCCCeEEEEE-eCCCCCcc---eEEEecCCCCEEEecCCC-----CCeEEEEecCCCceEEEEeC-CCCCc---eEEEE
Confidence 99877665552 12333332 33443 234488764 21 24699999976554444332 11111 23343
Q ss_pred E--CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEE
Q 007111 208 C--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLS 285 (617)
Q Consensus 208 ~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd 285 (617)
. ++.||+.-.. ...|+++++....-..+...... ....+++++. .+.||+.-.. .+.|+++|
T Consensus 566 D~~~~~LYwaD~~-----~~~I~~~d~dG~~~~~v~~~~~~---l~~P~glav~----~~~lYwtD~~----~~~I~~~d 629 (791)
T 3m0c_C 566 DLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDEKR---LAHPFSLAVF----EDKVFWTDII----NEAIFSAN 629 (791)
T ss_dssp ETTTTEEEEEETT-----TTEEEEEETTSCSCEEEEECTTT---TSSEEEEEEE----TTEEEEEETT----TTEEEEEE
T ss_pred ecCCCeEEEEeCC-----CCcEEEEecCCCceEEEecCCCc---cCCCCEEEEe----CCEEEEEECC----CCEEEEEe
Confidence 3 7899998543 25699999876543343321111 1223454443 3688887643 35788888
Q ss_pred CCCCc
Q 007111 286 IEKNE 290 (617)
Q Consensus 286 ~~~~~ 290 (617)
..+.+
T Consensus 630 k~tG~ 634 (791)
T 3m0c_C 630 RLTGS 634 (791)
T ss_dssp TTTCC
T ss_pred CCCCc
Confidence 76553
No 349
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=53.72 E-value=1.9e+02 Score=29.15 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=36.2
Q ss_pred CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEEC-CcEEEEEccCCCCCCCCeEEEEECCCC
Q 007111 107 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETM 185 (617)
Q Consensus 107 ~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~-~~~LyV~GG~~~~~~~n~v~~yD~~t~ 185 (617)
++++++-||.+. .+.++|+.+..-.... ........+++... +..+++.|+.++ .|..||..+.
T Consensus 155 d~~~las~s~D~------tv~~Wd~~~~~~~~~~----~~~~~~v~~v~~~p~~~~~l~~~~~d~-----~v~~wd~~t~ 219 (393)
T 4gq1_A 155 AEQVIASVGDDC------TLIIWRLTDEGPILAG----YPLSSPGISVQFRPSNPNQLIVGERNG-----NIRIFDWTLN 219 (393)
T ss_dssp EEEEEEEEETTS------EEEEEEEETTEEEEEE----EECSSCEEEEEEETTEEEEEEEEETTS-----EEEEEETTCC
T ss_pred CCCEEEEEECCC------eEEEEECCCCceeeee----cCCCCCcEEEEECCCCCceEEecCCCC-----EEEEEECCCC
Confidence 567888888654 3777787655422111 01111122344443 334677777764 4888898776
Q ss_pred cE
Q 007111 186 IW 187 (617)
Q Consensus 186 ~W 187 (617)
..
T Consensus 220 ~~ 221 (393)
T 4gq1_A 220 LS 221 (393)
T ss_dssp C-
T ss_pred cc
Confidence 43
No 350
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=53.66 E-value=1.6e+02 Score=28.47 Aligned_cols=156 Identities=10% Similarity=-0.057 Sum_probs=83.4
Q ss_pred eEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEE
Q 007111 50 HSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLH 127 (617)
Q Consensus 50 hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~ 127 (617)
..++.. +++||+.--. ...+++||+....-.... .+ ...+.++.. ++.+|+...... ...++
T Consensus 35 egia~~~~g~lyv~d~~------~~~I~~~d~~g~~~~~~~----~~--~~p~gia~~~dG~l~vad~~~~----~~~v~ 98 (306)
T 2p4o_A 35 ENLASAPDGTIFVTNHE------VGEIVSITPDGNQQIHAT----VE--GKVSGLAFTSNGDLVATGWNAD----SIPVV 98 (306)
T ss_dssp EEEEECTTSCEEEEETT------TTEEEEECTTCCEEEEEE----CS--SEEEEEEECTTSCEEEEEECTT----SCEEE
T ss_pred ceEEECCCCCEEEEeCC------CCeEEEECCCCceEEEEe----CC--CCceeEEEcCCCcEEEEeccCC----cceEE
Confidence 344442 5678887422 236999998875322222 12 233444443 467888653211 12588
Q ss_pred EEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEE--eecCC---CCCCC-Cc
Q 007111 128 MFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR--IKIRG---FHPSP-RA 201 (617)
Q Consensus 128 ~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~--~~~~g---~~P~~-R~ 201 (617)
.||+.+.+.+.+. ..+..+.....+...+.++|+.-.. ...+|++|+.+..-.. ..... ..... ..
T Consensus 99 ~~d~~~g~~~~~~---~~~~~~~~~g~~~~~~~~~~v~d~~-----~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~ 170 (306)
T 2p4o_A 99 SLVKSDGTVETLL---TLPDAIFLNGITPLSDTQYLTADSY-----RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA 170 (306)
T ss_dssp EEECTTSCEEEEE---ECTTCSCEEEEEESSSSEEEEEETT-----TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred EEcCCCCeEEEEE---eCCCccccCcccccCCCcEEEEECC-----CCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence 9999888887663 2344444445555555557775422 2469999997642211 11100 00111 11
Q ss_pred ceEEEEECCEEEEEecCCCCCccceEEEEECCC
Q 007111 202 GCCGVLCGTKWYIAGGGSRKKRHAETLIFDILK 234 (617)
Q Consensus 202 ~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~ 234 (617)
...+...++.+|+.--. .+.+++|++..
T Consensus 171 pngis~dg~~lyv~d~~-----~~~I~~~~~~~ 198 (306)
T 2p4o_A 171 ANGLKRFGNFLYVSNTE-----KMLLLRIPVDS 198 (306)
T ss_dssp EEEEEEETTEEEEEETT-----TTEEEEEEBCT
T ss_pred CCCcCcCCCEEEEEeCC-----CCEEEEEEeCC
Confidence 12233346688887532 25689999864
No 351
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=53.60 E-value=54 Score=30.05 Aligned_cols=84 Identities=25% Similarity=0.189 Sum_probs=44.4
Q ss_pred chHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhh---hhhHHHHHHHHHHHHHH---HHHHHHHHhhhHHhH
Q 007111 465 SSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV---LKSRQEMEKKLADSLKE---MELLKEKLAGLELAQ 538 (617)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~lkek~~~~e~~q 538 (617)
|+=+.....=|+-+=.+-..++++++++..-.+++.+.|.-+ +....+...|++ ..++ .|.+++-=--.|+.|
T Consensus 70 ~~~i~~m~~yI~llrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qArke~eKfe-lHrqiwqaE~kre~E~qEElEq 148 (169)
T 3k29_A 70 SDAILKMKAYIKVVAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEKTR-LHKEEWMKEALKEEARQEEKEQ 148 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhH
Confidence 444444444455455555566666666666666666655543 334444444442 2222 233444444455668
Q ss_pred Hhhhccccccc
Q 007111 539 EEANSLSNIVH 549 (617)
Q Consensus 539 e~~~~~~~~~~ 549 (617)
||.-+++-+.|
T Consensus 149 EEf~s~~~~~~ 159 (169)
T 3k29_A 149 DEMGQLLHQLH 159 (169)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888765544
No 352
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=53.45 E-value=94 Score=25.65 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhccc
Q 007111 507 LKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLS 545 (617)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~ 545 (617)
+...+.+..++..+...+..|+..+..+++|.+|-..|.
T Consensus 7 i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~ 45 (107)
T 1fxk_A 7 LAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAA 45 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334444555555555555555555555555555555543
No 353
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=53.36 E-value=32 Score=32.18 Aligned_cols=63 Identities=19% Similarity=0.228 Sum_probs=44.9
Q ss_pred HHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH---HHHHHHhhhH
Q 007111 473 SKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEME---LLKEKLAGLE 535 (617)
Q Consensus 473 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~lkek~~~~e 535 (617)
.-|+.|+.+|..|.+||++.....++..+.++++=......+..++...+.++ .|=|-|.|+.
T Consensus 20 ~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~LTGl~ 85 (190)
T 4emc_A 20 LLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYLCNVR 85 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHccCcE
Confidence 45788999999999999999888888888888874444445555554444443 3556677764
No 354
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=53.26 E-value=4 Score=32.17 Aligned_cols=31 Identities=35% Similarity=0.521 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHH
Q 007111 521 LKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAV 565 (617)
Q Consensus 521 ~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (617)
.+|+|-|||+++.++.- |-+||.|...||..
T Consensus 14 REEVevLKe~I~EL~e~--------------~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 14 REEVEILKEQIRELVEK--------------NSQLERENTLLKTL 44 (78)
T ss_dssp TTSCHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHh
Confidence 46889999999998743 56899999999864
No 355
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=53.11 E-value=63 Score=26.80 Aligned_cols=32 Identities=16% Similarity=0.098 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHh
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAE 500 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~ 500 (617)
+.+..++..+......|+.|+..+--..++.+
T Consensus 11 ~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~ 42 (107)
T 1fxk_A 11 QQLQQQAQAISVQKQTVEMQINETQKALEELS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777665544444443
No 356
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=52.89 E-value=22 Score=22.39 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhH
Q 007111 512 EMEKKLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 512 ~~~~~~~~~~~~~~~lkek~~~~e 535 (617)
-+|+|-|........|..||.++|
T Consensus 5 alekkcaalesklqalekkleale 28 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554444455555555544
No 357
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=52.73 E-value=42 Score=36.35 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhhHHhH-HhhhcccccccCC
Q 007111 519 DSLKEMELLKEKLAGLELAQ-EEANSLSNIVHSD 551 (617)
Q Consensus 519 ~~~~~~~~lkek~~~~e~~q-e~~~~~~~~~~~~ 551 (617)
.+.+++..|++++..+|..- +..-.|-|++|.+
T Consensus 115 ~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~ 148 (484)
T 3lss_A 115 DLSDQVAGLAKEAQQLEEERDKLMLNVGNILHES 148 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 33334444555555444332 5567799999987
No 358
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=52.41 E-value=50 Score=29.30 Aligned_cols=56 Identities=14% Similarity=0.293 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccc---cccC--CCc-chhhhHHHHHHHHHHHHHhhh
Q 007111 509 SRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSN---IVHS--DNV-RLEHDVAFLKAVLDDTQKELH 574 (617)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~---~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~ 574 (617)
-|+..+++|..+..++|.||.|= +++=- +.|+ ..+ -++|-|--+|.-|.+...+|+
T Consensus 53 kk~~Aekql~~Ake~~eKlkKKr----------sSv~gs~~~aHs~~sslD~vD~~Il~Ak~aL~evt~~l~ 114 (136)
T 3ter_A 53 QRQDCFKEMKEAIEMVDRLQKKQ----------GSVLSSLKLATGAASTSDQVDSKIFALKSRMEKIHTLTR 114 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----------------CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHhh----------hchheeeeeecCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555666666665552 22211 2344 222 244778888999999887765
No 359
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=52.29 E-value=2.2e+02 Score=29.55 Aligned_cols=74 Identities=16% Similarity=0.141 Sum_probs=44.2
Q ss_pred ECCEEEEEec----CCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEE
Q 007111 208 CGTKWYIAGG----GSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEV 283 (617)
Q Consensus 208 ~~~~IyI~GG----~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~v 283 (617)
-++++|+.-+ .+....-++++++|+.+.+...--. .+..-++ +.+..+++..||+.-+. .++|.+
T Consensus 290 ~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~------vg~~~~~-lavs~D~~~~ly~tn~~----~~~VsV 358 (386)
T 3sjl_D 290 ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE------MGHEIDS-INVSQDEKPLLYALSTG----DKTLYI 358 (386)
T ss_dssp TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE------EEEEECE-EEECSSSSCEEEEEETT----TTEEEE
T ss_pred CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE------CCCCcce-EEECCCCCeEEEEEcCC----CCeEEE
Confidence 3789999732 1122334789999999877544211 1111223 34444555578875442 358999
Q ss_pred EECCCCccc
Q 007111 284 LSIEKNESS 292 (617)
Q Consensus 284 yd~~~~~W~ 292 (617)
||..+.+-.
T Consensus 359 iD~~t~k~~ 367 (386)
T 3sjl_D 359 HDAESGEEL 367 (386)
T ss_dssp EETTTCCEE
T ss_pred EECCCCcEE
Confidence 999988743
No 360
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=51.74 E-value=1.8e+02 Score=32.80 Aligned_cols=120 Identities=14% Similarity=0.176 Sum_probs=66.3
Q ss_pred ECCEEEEEcccCCCCCCceEEEEEECCC-CcEEE-eeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEEC-
Q 007111 55 WGKKVLLVGGKTDSGSDRVSVWTFDTET-ECWSV-VEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL- 131 (617)
Q Consensus 55 ~g~~lyV~GG~~~~~~~~~~v~~yd~~t-~~W~~-~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~- 131 (617)
.++.+|+..-.. ......++.+|..+ ..|+. +-+ . .....-......++.||+....++ ...++++|+
T Consensus 329 ~g~~l~~~t~~~--~a~~~~L~~~d~~~~~~~~~~li~--~-~~~~~l~~~~~~~~~lv~~~~~~g----~~~l~~~dl~ 399 (751)
T 2xe4_A 329 GTSHLVILTNEG--GAVNHKLLIAPRGQPSDWSHVLVD--H-SEDVFMESIAVRSNYLVVAGRRAG----LTRIWTMMAD 399 (751)
T ss_dssp TTTEEEEEECTT--TCTTCEEEEEETTSTTCCCCEEEC--C-CSSEEEEEEEECSSEEEEEEEETT----EEEEEEEECC
T ss_pred eCCEEEEEeCCC--CCCCcEEEEEcCCCcccceeeEEC--C-CCCcEEEEEEEECCEEEEEEEeCC----EEEEEEEecc
Confidence 378888886542 11234799999876 67875 431 1 111121233445678777765544 467899996
Q ss_pred ------CCCc-EEEeecCCCCCCCCcccEEEE-------ECCc-EEEEEccCCCCCCCCeEEEEECCCCcEEEeec
Q 007111 132 ------KSLT-WLPLHCTGTGPSPRSNHVAAL-------YDDK-NLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 192 (617)
Q Consensus 132 ------~t~~-W~~l~~~g~~P~~R~~h~a~~-------~~~~-~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~ 192 (617)
.+.. ...+ .+|... +.... .++. .+|.+.+. .....++.||+.+++.+.+..
T Consensus 400 ~~~~~~~~g~~~~~l----~l~~~~--~~~~~~~~~~~~~~~~~l~~~~ss~---~~P~~~~~~d~~~~~~~~l~~ 466 (751)
T 2xe4_A 400 SQDGVFKAGTGLREV----VMEEPI--FTVHLVESQMLEYEEPTFRMEYSSL---ATPNTWFDVSPQDHSRTAVKV 466 (751)
T ss_dssp TTTSCCCTTTCCEEC----CCCCSS--CEEEECGGGCCCTTCSCEEEEEEET---TEEEEEEEECTTTCCEEEEEE
T ss_pred cccccccCCccceEE----CCCCce--eEEEeccCcccCCCCCEEEEEEeCC---CCCCEEEEEECCCCcEEEEec
Confidence 3444 4544 233322 22222 2333 23333332 234579999999888877764
No 361
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=51.71 E-value=49 Score=33.74 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhh----------hhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV----------LKSRQEMEKKLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~lkek~~~~e 535 (617)
.++.+++++-.....++.||+.|.+..+.|++++... -+..++.+..+..+..+++.++.++..++
T Consensus 67 ~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~ 142 (369)
T 4dk0_A 67 TQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAE 142 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555567777777777777777665432 12233444444444445555555444433
No 362
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=51.31 E-value=1.4e+02 Score=26.95 Aligned_cols=67 Identities=21% Similarity=0.218 Sum_probs=57.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhhhccch
Q 007111 507 LKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVL 580 (617)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (617)
+++|++.++=...+.+-.++|.|-...++...++=+.|..+ |+.=..|.++.+.+..+.|...|+-+
T Consensus 64 lkDk~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~-------L~~~~~~~~~~l~e~e~~leeyK~Kl 130 (152)
T 4fla_A 64 ITDKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARM-------LVEYTQNQKDVLSEKEKKLEEYKQKL 130 (152)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999998888654 56667888889988888888777655
No 363
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=50.59 E-value=24 Score=32.20 Aligned_cols=68 Identities=25% Similarity=0.314 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHH------hhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhhhccchh
Q 007111 508 KSRQEMEKKLADSLKEMELLKEKLAGLELAQE------EANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLA 581 (617)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (617)
+--+.|...+.+..+|++.|+++++..+ +.+ +.|...=+++ .+ +-|..+|+.+.++..+. +.--+|+
T Consensus 32 ~~v~~l~~e~k~l~ke~~~l~~~~a~~~-~~~l~~~~~~i~g~~~~~~--~~--~~d~~~lr~~~~~l~~~--~~vv~l~ 104 (171)
T 2zvf_A 32 KTVERFFEEWKDQRKEIERLKSVIADLW-ADILMERAEEFDSMKVVAE--VV--DADMQALQKLAERLAEK--GAVGCLM 104 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCEESSSCEEEEE--EC--SCCHHHHHHHHHHHHHT--TEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcEEeCCEEEEEE--Ee--CCCHHHHHHHHHHHhcC--CCEEEEE
Confidence 3445555566667777777777777653 222 1122211111 12 66889999999988665 4444455
Q ss_pred h
Q 007111 582 G 582 (617)
Q Consensus 582 ~ 582 (617)
+
T Consensus 105 ~ 105 (171)
T 2zvf_A 105 A 105 (171)
T ss_dssp E
T ss_pred E
Confidence 4
No 364
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=50.25 E-value=98 Score=28.66 Aligned_cols=68 Identities=10% Similarity=0.152 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHhchhhHhHHHHhh-cHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007111 467 IYQFYESKMAALIRKNGILEGQLAAALV-NREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 534 (617)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~ 534 (617)
|..+|+...+-.+.+-.....+|..+++ -.++.++.+..+-.-++.+|+.++...++++.|+++.+.+
T Consensus 21 i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~ 89 (174)
T 2p22_A 21 VNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKV 89 (174)
T ss_dssp HHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888888888888888877755 4556677777777777888888888888888888855433
No 365
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=49.72 E-value=7.6 Score=43.17 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=8.9
Q ss_pred CcchhhhHHHHHHHHHHHHHhhh
Q 007111 552 NVRLEHDVAFLKAVLDDTQKELH 574 (617)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~ 574 (617)
-.+|+.++.--+.-+++++.+|+
T Consensus 435 ~~~~~~~~~~a~~~~~~~~~~l~ 457 (575)
T 2i1j_A 435 TRRLQEEVEDARRKQDEAAAALL 457 (575)
T ss_dssp -------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555666653
No 366
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=49.37 E-value=3.3e+02 Score=30.68 Aligned_cols=104 Identities=14% Similarity=0.158 Sum_probs=59.6
Q ss_pred ccCeEEEEECCC--CcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCC-----CCCCCeEEEEECCC--------Cc
Q 007111 122 KLNDLHMFDLKS--LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK-----SKTLNDLYSLDFET--------MI 186 (617)
Q Consensus 122 ~~~~v~~yD~~t--~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~-----~~~~n~v~~yD~~t--------~~ 186 (617)
+.+.+|..|... ..|.++ .+|.. .. .....++. +|+....+- .-....+..+|+.+ ..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~l----~~~~~-~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 339 (711)
T 4hvt_A 267 YNYDNYILDTKYKNLKLQKI----NMPSD-AT-LQGSFKEY-VFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTS 339 (711)
T ss_dssp SCEEEEEEECSSSSCEEEEC----CSCTT-CE-EEEEETTE-EEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTT
T ss_pred CceeEEEEcCCCCCCcceEe----ecCCc-ce-EeeeECCE-EEEEECcccccccccCCCCeEEEEECCccccccccccc
Confidence 347888888764 678877 33432 22 23445666 888764431 12455699999764 46
Q ss_pred EEEeecCCCCCCCC-cceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEE
Q 007111 187 WTRIKIRGFHPSPR-AGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 239 (617)
Q Consensus 187 W~~~~~~g~~P~~R-~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~ 239 (617)
|+.+-. |... .--.+...++.+|+..-..+ ...++++|+.+..|..
T Consensus 340 ~~~~~~----~~~~~~l~~~~~~~~~l~~~~~~~~---~~~l~~~~~~~g~~~~ 386 (711)
T 4hvt_A 340 LKILFT----PTANEVFNFISTTKDRVFLATYDNV---VAKVVTFTLENEQWTK 386 (711)
T ss_dssp CEEEEC----CCTTEEEEEEEECSSCEEEEEEETT---EEEEEEECEETTEECC
T ss_pred ceEEEC----CCCCCeEEEEEEECCEEEEEEEECC---EEEEEEEECCCCceEE
Confidence 887543 2222 22233444677776543222 2468889887777743
No 367
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=49.15 E-value=68 Score=26.20 Aligned_cols=79 Identities=34% Similarity=0.442 Sum_probs=39.4
Q ss_pred HHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCC
Q 007111 473 SKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDN 552 (617)
Q Consensus 473 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~ 552 (617)
.....|++.+..|+.-|+..-..-++-+|. .-+++.|+.+++|..+ -||+|.+++.-- |+
T Consensus 18 ~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~-------i~el~akidd~Lk~l~--~EklAkldLE~R----Ls------- 77 (101)
T 1d7m_A 18 VSREQLIKQKDQLNSLLASLESEGAEREKR-------LRELEAKLDETLKNLE--LEKLARMELEAR----LA------- 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH--HHHHHHHHHHHH----HH-------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHccc--HHHHHHHHHHHH----Hh-------
Confidence 344456666555544444333322222222 3356667777777666 366666665411 11
Q ss_pred cchhhhHHHHHHHHHHHHHh
Q 007111 553 VRLEHDVAFLKAVLDDTQKE 572 (617)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~ 572 (617)
.-|.|-|.|.--|.+++.|
T Consensus 78 -KtEKDkAiLELkLaE~~De 96 (101)
T 1d7m_A 78 -KTEKDRAILELKLAEAIDE 96 (101)
T ss_dssp -HHHHHHHHHHHHHHHHHHH
T ss_pred -hhhhHHHHHHHHHHHhhhh
Confidence 1245555555555555443
No 368
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.80 E-value=45 Score=27.90 Aligned_cols=80 Identities=21% Similarity=0.342 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhccccccc
Q 007111 511 QEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQL 590 (617)
Q Consensus 511 ~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (617)
.+++.++++...|+..|+++|+.......++ .+..-.+|+||.-|-|-|=+-=.+ ..|.+|.-.-.+
T Consensus 15 ~~le~~~~~~~~e~~~L~~~l~eE~~~R~~a-------E~~~~~ie~ElEeLTasLFeEAN~------MVa~ar~e~~~~ 81 (97)
T 2eqb_B 15 NTLKRELSDRDDEVKRLREDIAKENELRTKA-------EEEADKLNKEVEDLTASLFDEANN------MVADARKEKYAI 81 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 3444455555555555555555444333332 223445666766666654332222 233344444455
Q ss_pred hhhHHHHHHHHhh
Q 007111 591 QVEVFHLKQRLQS 603 (617)
Q Consensus 591 ~~~~~~~~~~~~~ 603 (617)
+..+..|+..|.-
T Consensus 82 e~kn~~L~~qL~d 94 (97)
T 2eqb_B 82 EILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 6666666666654
No 369
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=48.74 E-value=1.8e+02 Score=32.59 Aligned_cols=219 Identities=11% Similarity=0.072 Sum_probs=106.6
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEcccCCCCCCceEEEEEECCCC----cEEEe
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETE----CWSVV 88 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~~t~----~W~~~ 88 (617)
.+.++++.+.....+... + ...++++.. ++.||+.--. ...|+++++.+. .-..+
T Consensus 387 ~I~~id~~~~~~~~~~~~---------~----~~p~gla~d~~~~~Ly~sD~~------~~~I~~~~~~g~~~~~~~~~~ 447 (699)
T 1n7d_A 387 EVRKMTLDRSEYTSLIPN---------L----RNVVALDTEVASNRIYWSDLS------QRMICSTQLDRAHGVSSYDTV 447 (699)
T ss_dssp C-CEECTTSCCEECCSCC---------C----TTCCCCEEETTTTEEEECCTT------TTSBEEEESCCCCC-CCCCCB
T ss_pred ceEEEeCCCCcceeeecc---------C----cceEEEccccccCeEEEEecC------CCeEEEEecCCCCCCcceEEE
Confidence 566777777666544331 1 112334433 5788877322 125888888751 11111
Q ss_pred eccCCCCCCcceeEEEE--ECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEE
Q 007111 89 EAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIF 165 (617)
Q Consensus 89 ~~~g~~P~~R~~~s~~~--~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~ 165 (617)
- . ........+++ .++.||+.-. ..+.|+++++....-+.+- ...+..|+ .+++. .++.||+.
T Consensus 448 i---~-~~~~~P~glavD~~~g~LY~tD~------~~~~I~v~d~dg~~~~~l~-~~~~~~P~---giavDp~~g~ly~t 513 (699)
T 1n7d_A 448 I---S-RDIQAPDGLAVDWIHSNIYWTDS------VLGTVSVADTKGVKRKTLF-REQGSKPR---AIVVDPVHGFMYWT 513 (699)
T ss_dssp C---C-SCC--CCCEECCCSSSBCEECCT------TTSCEEEEBSSSCCEEEEC-CCSSCCCC---CEECCSSSSCCEEC
T ss_pred E---e-CCCCCcceEEEEeeCCcEEEEec------cCCeEEEEecCCCceEEEE-eCCCCCcc---eEEEccCCCcEEEc
Confidence 0 0 01111223333 3578888531 2456899998876555442 11222232 23332 23337765
Q ss_pred ccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE--ECCEEEEEecCCCCCccceEEEEECCCCcEEEeecC
Q 007111 166 GGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL--CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITS 243 (617)
Q Consensus 166 GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~--~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~ 243 (617)
--. ....|+++++....-..+... ....|. ++++ .+++||+.-... ..|++||+....-..+...
T Consensus 514 d~~----~~~~I~~~~~dG~~~~~l~~~-~l~~Pn---Glavd~~~~~LY~aD~~~-----~~I~~~d~dG~~~~~~~~~ 580 (699)
T 1n7d_A 514 DWG----TPAKIKKGGLNGVDIYSLVTE-NIQWPN---GITLDLLSGRLYWVDSKL-----HSISSIDVNGGNRKTILED 580 (699)
T ss_dssp CCS----SSCCEEBCCSSSCCCCEESCS-SCSSCC---CEEECTTTCCEEEEETTT-----TEEEEECSSSSCCEEECCC
T ss_pred ccC----CCCeEEEEeCCCCCeeEEEeC-CCCCcc---EEEEeccCCEEEEEecCC-----CeEEEEccCCCceEEEEec
Confidence 311 124688888764433322221 111222 2333 267899986432 5689999876444443321
Q ss_pred CCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 244 PSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 244 ~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
... ....+++++.. +.||+.-.. .+.|.++++.+.+
T Consensus 581 ~~~---~~~P~glavd~----~~lywtd~~----~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 581 EKR---LAHPFSLAVFE----DKVFWTDII----NEAIFSANRLTGS 616 (699)
T ss_dssp SSS---CSSCCCCEEET----TEEEEECST----TTCEEEEETTTEE
T ss_pred CCc---CCCceEeEEEC----CEEEEEeCC----CCeEEEEEccCCC
Confidence 111 11223444432 578877632 3478999986554
No 370
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=48.73 E-value=65 Score=25.92 Aligned_cols=53 Identities=15% Similarity=0.197 Sum_probs=36.0
Q ss_pred HHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007111 475 MAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 534 (617)
Q Consensus 475 ~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~ 534 (617)
+..-|+-+..+..+|....+..-+++++| ++.|++-.+++.||+.||+++..+
T Consensus 19 LeaEIqAKQ~i~EELs~vr~~ni~~eskL-------~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 19 LEEEVLTRQSLSREMEAIRTDNQNFASQL-------REAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777777666666664 366677777777888888877653
No 371
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=48.42 E-value=42 Score=27.89 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=22.0
Q ss_pred HHHHHHHhchhhHhHHHHhhcHHHHhh
Q 007111 475 MAALIRKNGILEGQLAAALVNREAAEK 501 (617)
Q Consensus 475 ~~~~~~~~~~~~~q~~~~~~~~~~~~~ 501 (617)
|..|-.+....|+||..|..-+..|++
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~ 33 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAER 33 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777889999999999888887
No 372
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=47.66 E-value=1.9e+02 Score=27.49 Aligned_cols=146 Identities=18% Similarity=0.276 Sum_probs=75.0
Q ss_pred EEEE-ECCEEEEEcccCCCCCCceEEEEEECCCCcEE--EeeccC-CCCCCcceeEEEEECCEEEEEeecCCCCCccCeE
Q 007111 51 SLIS-WGKKVLLVGGKTDSGSDRVSVWTFDTETECWS--VVEAKG-DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDL 126 (617)
Q Consensus 51 s~v~-~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~--~~~~~g-~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v 126 (617)
+++. .++++|+|=|. .+|+++.....+. .+.... .+|. ...++.. .++++|+|=| +.+
T Consensus 22 Ai~~~~~g~~yfFkg~--------~~Wr~~~~~~~~~p~~Is~~wpgLP~-~IDAA~~-~~~~~yfFkG--------~~y 83 (219)
T 1hxn_A 22 AMVSDNHGATYVFSGS--------HYWRLDTNRDGWHSWPIAHQWPQGPS-TVDAAFS-WEDKLYLIQD--------TKV 83 (219)
T ss_dssp EEEECTTSCEEEEETT--------EEEESSSSSCTTCCEEGGGTCTTSCS-SCSEEEE-ETTEEEEEET--------TEE
T ss_pred EEEECCCCcEEEEeCC--------EEEEEcCCCCCCCceEhhhhccCCCC-CccEEEE-ECCcEEEecC--------CEE
Confidence 4444 47889999764 4888876543321 222111 2342 3444333 4899999954 458
Q ss_pred EEEECCCC-cE-----EEeecCCCCCCC--Cccc-EEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCC---cEEEeecC
Q 007111 127 HMFDLKSL-TW-----LPLHCTGTGPSP--RSNH-VAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETM---IWTRIKIR 193 (617)
Q Consensus 127 ~~yD~~t~-~W-----~~l~~~g~~P~~--R~~h-~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~---~W~~~~~~ 193 (617)
|+|+..++ +- +.+...-.+|.. ...- ++..+ ++..+|+|-|. ..|+||..+. .|.....
T Consensus 84 w~~~~~~~~~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG~-------~ywr~d~~~~P~~i~~~~~g- 155 (219)
T 1hxn_A 84 YVFLTKGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAGR-------RLWWLDLKSGAQATWTELPW- 155 (219)
T ss_dssp EEEECSSSCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEETT-------EEEEEEGGGGGGCCCEEECC-
T ss_pred EEEeCCCCceecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeCC-------EEEEEeCCCCceEhhhcCCC-
Confidence 99986532 11 112100013332 1112 33323 33348999874 4899997542 2322211
Q ss_pred CCCCCCCcceEEEE------------ECCEEEEEecCCCCCccceEEEEECC
Q 007111 194 GFHPSPRAGCCGVL------------CGTKWYIAGGGSRKKRHAETLIFDIL 233 (617)
Q Consensus 194 g~~P~~R~~ha~v~------------~~~~IyI~GG~s~~~~~~~v~~yDl~ 233 (617)
+| ... .++.. .++.+|++-| +..|+||..
T Consensus 156 --~p-~~v-dAa~~~~~~~~~~~~~~~~~~~YFFkg-------~~y~r~~~~ 196 (219)
T 1hxn_A 156 --PH-EKV-DGALCMEKPLGPNSCSTSGPNLYLIHG-------PNLYCYRHV 196 (219)
T ss_dssp --SC-SCC-SEEEEESSCSSSCCSCSSSCEEEEEET-------TEEEEESSH
T ss_pred --CC-CCc-CEEEEccccccccceeccCCeEEEEEC-------CEEEEEeCC
Confidence 12 222 23333 3567999977 357788764
No 373
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=47.47 E-value=1.4e+02 Score=31.08 Aligned_cols=144 Identities=17% Similarity=0.081 Sum_probs=76.9
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
++.||+.--. ..+.+||+.++....+.. .......+++. ++.||+....... ....++.++...
T Consensus 149 ~g~Lyv~d~~-------~~I~~id~~~~~v~~~~~-----~~~~P~~ia~d~~G~~lyvad~~~~~--~~~~v~~~~~~g 214 (430)
T 3tc9_A 149 HNHLYLVGEQ-------HPTRLIDFEKEYVSTVYS-----GLSKVRTICWTHEADSMIITNDQNNN--DRPNNYILTRES 214 (430)
T ss_dssp EEEEEEEEBT-------EEEEEEETTTTEEEEEEC-----CCSCEEEEEECTTSSEEEEEECCSCT--TSEEEEEEEGGG
T ss_pred CCeEEEEeCC-------CcEEEEECCCCEEEEEec-----CCCCcceEEEeCCCCEEEEEeCCCCc--ccceEEEEeCCC
Confidence 4788888421 579999999988877752 12222333332 3458888643322 233466677543
Q ss_pred CcEE---EeecCCCCCCCCcccEEEEEC-CcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-
Q 007111 134 LTWL---PLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC- 208 (617)
Q Consensus 134 ~~W~---~l~~~g~~P~~R~~h~a~~~~-~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~- 208 (617)
.|. .+. .+.. -+.+++.. +..||+.--. .+.|++||+.+.....+...+....|+ .++..
T Consensus 215 -~~~~~~~l~---~~~~---p~giavdp~~g~lyv~d~~-----~~~V~~~~~~~~~~~~~~~~~~~~~P~---gia~~p 279 (430)
T 3tc9_A 215 -GFKVITELT---KGQN---CNGAETHPINGELYFNSWN-----AGQVFRYDFTTQETTPLFTIQDSGWEF---HIQFHP 279 (430)
T ss_dssp -TSCSEEEEE---ECSS---CCCEEECTTTCCEEEEETT-----TTEEEEEETTTTEEEEEEECSSSSCCE---EEEECT
T ss_pred -ceeeeeeec---cCCC---ceEEEEeCCCCEEEEEECC-----CCEEEEEECCCCcEEEEEEcCCCCcce---eEEEcC
Confidence 232 222 1222 23444443 3447776432 246999999877664443332111222 23332
Q ss_pred -CCEEEEEecCCCCCccceEEEEECC
Q 007111 209 -GTKWYIAGGGSRKKRHAETLIFDIL 233 (617)
Q Consensus 209 -~~~IyI~GG~s~~~~~~~v~~yDl~ 233 (617)
++.+|+.--.. ..+++|+..
T Consensus 280 dG~~lyv~d~~~-----~~I~~~~~d 300 (430)
T 3tc9_A 280 SGNYAYIVVVNQ-----HYILRSDYD 300 (430)
T ss_dssp TSSEEEEEETTT-----TEEEEEEEE
T ss_pred CCCEEEEEECCC-----CEEEEEeCC
Confidence 44589885332 457776654
No 374
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=47.29 E-value=1.3e+02 Score=33.70 Aligned_cols=150 Identities=11% Similarity=-0.024 Sum_probs=78.7
Q ss_pred ECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEE--ECCEEEEEeecCCCCCccCeEEEEECC
Q 007111 55 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLK 132 (617)
Q Consensus 55 ~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~--~~~~IYv~GG~~~~~~~~~~v~~yD~~ 132 (617)
.+++||+.-.. ...|+++++....-..+... .+..+ ..+++ .++.||+..- + ....|+++++.
T Consensus 463 ~~g~LY~tD~~------~~~I~v~d~dg~~~~~l~~~-~~~~P---~giavDp~~g~ly~td~----~-~~~~I~~~~~d 527 (699)
T 1n7d_A 463 IHSNIYWTDSV------LGTVSVADTKGVKRKTLFRE-QGSKP---RAIVVDPVHGFMYWTDW----G-TPAKIKKGGLN 527 (699)
T ss_dssp SSSBCEECCTT------TSCEEEEBSSSCCEEEECCC-SSCCC---CCEECCSSSSCCEECCC----S-SSCCEEBCCSS
T ss_pred eCCcEEEEecc------CCeEEEEecCCCceEEEEeC-CCCCc---ceEEEccCCCcEEEccc----C-CCCeEEEEeCC
Confidence 46788886322 23589999887654444311 11222 22333 2567777531 1 12568888876
Q ss_pred CCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecC-CCCCCCCcceEEEEECC
Q 007111 133 SLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR-GFHPSPRAGCCGVLCGT 210 (617)
Q Consensus 133 t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~-g~~P~~R~~ha~v~~~~ 210 (617)
...-+.+. ...+..|. ++++- .+..||+.-.. .+.|++||+....-..+... +..+. -+++++.++
T Consensus 528 G~~~~~l~-~~~l~~Pn---Glavd~~~~~LY~aD~~-----~~~I~~~d~dG~~~~~~~~~~~~~~~---P~glavd~~ 595 (699)
T 1n7d_A 528 GVDIYSLV-TENIQWPN---GITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDEKRLAH---PFSLAVFED 595 (699)
T ss_dssp SCCCCEES-CSSCSSCC---CEEECTTTCCEEEEETT-----TTEEEEECSSSSCCEEECCCSSSCSS---CCCCEEETT
T ss_pred CCCeeEEE-eCCCCCcc---EEEEeccCCEEEEEecC-----CCeEEEEccCCCceEEEEecCCcCCC---ceEeEEECC
Confidence 54433331 11222221 33332 33448886533 35699999875443333321 11122 234566788
Q ss_pred EEEEEecCCCCCccceEEEEECCCCc
Q 007111 211 KWYIAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 211 ~IyI~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
.+|+.-... ..|+++|..+.+
T Consensus 596 ~lywtd~~~-----~~V~~~d~~~G~ 616 (699)
T 1n7d_A 596 KVFWTDIIN-----EAIFSANRLTGS 616 (699)
T ss_dssp EEEEECSTT-----TCEEEEETTTEE
T ss_pred EEEEEeCCC-----CeEEEEEccCCC
Confidence 999985322 458899876554
No 375
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=47.15 E-value=23 Score=35.92 Aligned_cols=34 Identities=15% Similarity=0.030 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhh
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKNF 503 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~ 503 (617)
.++.+++++-.....++.||+.|.+.++.|++++
T Consensus 66 ~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~ 99 (341)
T 3fpp_A 66 QAENQIKEVEATLMELRAQRQQAEAELKLARVTY 99 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554455556666666666666666553
No 376
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=46.85 E-value=1.1e+02 Score=24.61 Aligned_cols=69 Identities=14% Similarity=0.248 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007111 466 SIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 534 (617)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~ 534 (617)
+|..-.+.||+++|...+.|.-.+++.-....+.......+-.+|..++.+.+..-.|...-.++|.++
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666444443333332222222222222223334444444444444444444444443
No 377
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=46.36 E-value=96 Score=30.46 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=9.3
Q ss_pred hhhHhHHHHhhcHHHHhhhhhhh
Q 007111 484 ILEGQLAAALVNREAAEKNFSSV 506 (617)
Q Consensus 484 ~~~~q~~~~~~~~~~~~~~~~~~ 506 (617)
.+...+..+....+.|.|+.-..
T Consensus 120 k~~k~~~~~~~~l~KaKk~Y~~~ 142 (301)
T 2efk_A 120 RAQQQLENGFKQLENSKRKFERD 142 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333
No 378
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=46.12 E-value=1.2e+02 Score=26.27 Aligned_cols=85 Identities=14% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHH--H--------------------------------
Q 007111 474 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLA--D-------------------------------- 519 (617)
Q Consensus 474 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------------------------------- 519 (617)
++++|......++.++....+.+.+.+..+...-++.+.++. |. +
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~-l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~ 80 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSD-IQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGV 80 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCE
Q ss_pred -----HHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhh
Q 007111 520 -----SLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKEL 573 (617)
Q Consensus 520 -----~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (617)
..+-.+.|++|+..++..-+. ++.+++|+++-+..++.+|
T Consensus 81 ~vE~~~~eA~~~l~~r~~~l~~~~~~--------------l~~~l~~l~~~i~~~~~~l 125 (133)
T 1fxk_C 81 AIKKNFEDAMESIKSQKNELESTLQK--------------MGENLRAITDIMMKLSPQA 125 (133)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
No 379
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=45.87 E-value=2.7e+02 Score=28.62 Aligned_cols=153 Identities=12% Similarity=0.042 Sum_probs=73.3
Q ss_pred EEEECCEEEEEeecCCCCCccCeEEEEECCCCcE--EEeec-CCCCCCCCcccEEEEE--CCcEEEEEccCCCCCCCCeE
Q 007111 103 VVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTW--LPLHC-TGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDL 177 (617)
Q Consensus 103 ~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W--~~l~~-~g~~P~~R~~h~a~~~--~~~~LyV~GG~~~~~~~n~v 177 (617)
++..++.+|+|=| +.+|+++.....- ..+.. -..+|. ... ++... +++ +|+|=|. ..
T Consensus 186 v~~~~g~~~fFkg--------~~~Wr~~~~~~~~~p~~I~~~wpgLP~-~iD-Aa~~~~~~g~-~~fFkg~-------~y 247 (365)
T 3ba0_A 186 VTTVGNKIFFFKD--------RFFWLKVSERPKTSVNLISSLWPTLPS-GIE-AAYEIEARNQ-VFLFKDD-------KY 247 (365)
T ss_dssp EEEETTEEEEEET--------TEEEECCSSCCCCCEEEHHHHCSSCCS-SCC-EEEEEGGGTE-EEEEETT-------EE
T ss_pred EEEcCCeEEEEeC--------CEEEEEcCCCccCCccchhhhccCCCC-Ccc-EEEEecCCCE-EEEEeCC-------EE
Confidence 4557889999854 2355554433211 11110 013442 222 33333 566 8898773 37
Q ss_pred EEEECCCCc--EE-EeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCC----CC
Q 007111 178 YSLDFETMI--WT-RIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS----SV 248 (617)
Q Consensus 178 ~~yD~~t~~--W~-~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~----~p 248 (617)
|+|+..... +- .+...|-+..+..--++... ++++|+|-| +..|+||..+.+-.. ..|.. .|
T Consensus 248 Wr~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG-------~~yw~yd~~~~~v~~--gyPk~I~~~f~ 318 (365)
T 3ba0_A 248 WLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVD-------NQYWRYDERRQMMDP--GYPKLITKNFQ 318 (365)
T ss_dssp EECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECS--SCCCCHHHHST
T ss_pred EEEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEEC-------CEEEEEeCCcceecC--CCCcchhhcCC
Confidence 777643211 11 12111211111122244444 589999977 468999987653211 10100 00
Q ss_pred CCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 249 TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 249 ~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.-....-++... . .+.+|+|=|. ..|+||..+.+
T Consensus 319 g~p~~iDaA~~~-~-~g~~YfFkg~------~ywr~d~~~~~ 352 (365)
T 3ba0_A 319 GIGPKIDAVFYS-K-NKYYYFFQGS------NQFEYDFLLQR 352 (365)
T ss_dssp TCCSSCSEEEEE-T-TTEEEEEETT------EEEEEETTTTE
T ss_pred CCCCccceeeEe-c-CCcEEEEeCC------EEEEEECCccE
Confidence 111112222222 1 3568888774 68999987765
No 380
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=45.63 E-value=96 Score=32.34 Aligned_cols=78 Identities=17% Similarity=0.060 Sum_probs=46.7
Q ss_pred ECCEEEEEeecC---CCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEE-ECCc-EEEEEccCCCCCCCCeEEEE
Q 007111 106 ASSVLILFGGED---GKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL-YDDK-NLLIFGGSSKSKTLNDLYSL 180 (617)
Q Consensus 106 ~~~~IYv~GG~~---~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~-~~~~-~LyV~GG~~~~~~~n~v~~y 180 (617)
.++++|+.-+.. ......+.++++|+.+.+-..- ++.+..-.++.+ -+++ .||+.-+.+ +++.+|
T Consensus 290 ~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~-----i~vg~~~~~lavs~D~~~~ly~tn~~~-----~~VsVi 359 (386)
T 3sjl_D 290 ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAK-----FEMGHEIDSINVSQDEKPLLYALSTGD-----KTLYIH 359 (386)
T ss_dssp TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE-----EEEEEEECEEEECSSSSCEEEEEETTT-----TEEEEE
T ss_pred CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEE-----EECCCCcceEEECCCCCeEEEEEcCCC-----CeEEEE
Confidence 357999974322 2222457899999999886543 122222223333 3444 577765433 569999
Q ss_pred ECCCCcEEEeecC
Q 007111 181 DFETMIWTRIKIR 193 (617)
Q Consensus 181 D~~t~~W~~~~~~ 193 (617)
|..+++-..-...
T Consensus 360 D~~t~k~~~~i~~ 372 (386)
T 3sjl_D 360 DAESGEELRSVNQ 372 (386)
T ss_dssp ETTTCCEEEEECC
T ss_pred ECCCCcEEEEecC
Confidence 9999886654443
No 381
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=45.46 E-value=21 Score=37.75 Aligned_cols=35 Identities=20% Similarity=0.140 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHh
Q 007111 466 SIYQFYESKMAALIRKNGILEGQLAAALVNREAAE 500 (617)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~ 500 (617)
.|.++..+-...+-.....||..|..+..+.++++
T Consensus 24 ~i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~ 58 (409)
T 1m1j_C 24 GIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIE 58 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 44443333333344455555555555555555555
No 382
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.02 E-value=67 Score=29.17 Aligned_cols=67 Identities=19% Similarity=0.076 Sum_probs=37.3
Q ss_pred HHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhh--------HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhh
Q 007111 475 MAALIRKNGILEGQLAAALVNREAAEKNFSSVLKS--------RQEMEKKLADSLKEMELLKEKLAGLELAQEEA 541 (617)
Q Consensus 475 ~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~ 541 (617)
.+..-.+...|-.+|....+.+.+||+.+.-+=+- .+++.+.+|+.-++...+++|+.-++..=.|.
T Consensus 53 ~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~ 127 (154)
T 2ocy_A 53 LSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREK 127 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555566666666666666554432111 34556667777777777777766665544443
No 383
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=44.66 E-value=3.6e+02 Score=29.77 Aligned_cols=148 Identities=11% Similarity=0.092 Sum_probs=77.9
Q ss_pred CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCC-CCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCC
Q 007111 107 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP-SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM 185 (617)
Q Consensus 107 ~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P-~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~ 185 (617)
+|..++.++.++. +.+||..+ .+..+. ..++ ..+..++++...+..+++.||.++ .|..||+.++
T Consensus 96 dG~~LAs~s~dg~------V~iwd~~~-~l~~l~--~~~~~~~~sv~svafSPDG~~LAsgs~DG-----tVkIWd~~~~ 161 (588)
T 2j04_A 96 IDDWMAVLSNNGN------VSVFKDNK-MLTNLD--SKGNLSSRTYHCFEWNPIESSIVVGNEDG-----ELQFFSIRKN 161 (588)
T ss_dssp SSSCEEEEETTSC------EEEEETTE-EEEECC--CSSCSTTTCEEEEEECSSSSCEEEEETTS-----EEEEEECCCC
T ss_pred CCCEEEEEeCCCc------EEEEeCCc-eeeecc--CCCccccccEEEEEEcCCCCEEEEEcCCC-----EEEEEECCCC
Confidence 5677777776554 77888544 455443 2333 223444555444333777888764 4889999876
Q ss_pred c--------EEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCc----EEEeecCCCCCCCCCcc
Q 007111 186 I--------WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE----WSVAITSPSSSVTSNKG 253 (617)
Q Consensus 186 ~--------W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~----W~~l~~~~~~~p~~r~~ 253 (617)
. ...+..... ...-.-.+++...+. ++.+|.. +.+..+|+..+. |..+.. ..+..
T Consensus 162 ~l~~~~~i~l~ti~~~~~-gh~~~V~sVawSPdg-Laass~D-----~tVrlWd~~~~~~~~~~~tL~~------~h~~~ 228 (588)
T 2j04_A 162 SENTPEFYFESSIRLSDA-GSKDWVTHIVWYEDV-LVAALSN-----NSVFSMTVSASSHQPVSRMIQN------ASRRK 228 (588)
T ss_dssp TTTCCCCEEEEEEECSCT-TCCCCEEEEEEETTE-EEEEETT-----CCEEEECCCSSSSCCCEEEEEC------CCSSC
T ss_pred ccccccceeeeeeecccc-cccccEEEEEEcCCc-EEEEeCC-----CeEEEEECCCCccccceeeecc------cccCc
Confidence 3 222221100 011123344555666 6676654 347788887654 334321 12222
Q ss_pred eEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 254 FTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 254 ~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
...+.+. + . +++.++. ..|.+||+.+..
T Consensus 229 V~svaFs--g-~-~LASa~~-----~tIkLWd~~~~~ 256 (588)
T 2j04_A 229 ITDLKIV--D-Y-KVVLTCP-----GYVHKIDLKNYS 256 (588)
T ss_dssp CCCEEEE--T-T-EEEEECS-----SEEEEEETTTTE
T ss_pred EEEEEEE--C-C-EEEEEeC-----CeEEEEECCCCe
Confidence 3333333 2 3 3444442 378999988765
No 384
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=44.29 E-value=2.1e+02 Score=27.05 Aligned_cols=154 Identities=14% Similarity=0.146 Sum_probs=74.6
Q ss_pred EEEEECCEEEEEeecCCCCCccCeEEEEECCCCc-EEEeecC---CCCCCCCcccEEEEE--CCcEEEEEccCCCCCCCC
Q 007111 102 TVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT-WLPLHCT---GTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLN 175 (617)
Q Consensus 102 s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~-W~~l~~~---g~~P~~R~~h~a~~~--~~~~LyV~GG~~~~~~~n 175 (617)
+++...+.+|+|=| +.+|+++..... ....... ..+|. ... ++... +++ +|+|=|.
T Consensus 35 Ai~~~~g~~~fFkg--------~~~Wr~~~~~~~~~~P~~I~~~wp~lp~-~ID-AA~~~~~~~k-~yfFkG~------- 96 (218)
T 1gen_A 35 GIAQIRGEIFFFKD--------RFIWRTVTPRDKPMGPLLVATFWPELPE-KID-AVYEAPQEEK-AVFFAGN------- 96 (218)
T ss_dssp EEEEETTEEEEEET--------TEEEEESSTTSCCEEEEEGGGTCTTSCS-CCS-EEEEETTTTE-EEEEETT-------
T ss_pred EEEeCCCcEEEEEC--------CEEEEEeCCCCccCCCEEHHHhcCCCCC-Ccc-EEEEECCCCE-EEEEeCC-------
Confidence 34557889999855 235555543321 2111111 12342 222 33332 355 8998773
Q ss_pred eEEEEECCCCc--E-EEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEE-----EeecCCC
Q 007111 176 DLYSLDFETMI--W-TRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWS-----VAITSPS 245 (617)
Q Consensus 176 ~v~~yD~~t~~--W-~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~-----~l~~~~~ 245 (617)
..|+||-.+.. + ..+...+.+..+..-.++... ++++|+|-| +..|+||..+..-. .+...=.
T Consensus 97 ~yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG-------~~ywr~d~~~~~v~~gyPr~i~~~w~ 169 (218)
T 1gen_A 97 EYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG-------DKFWRYNEVKKKMDPGFPKLIADAWN 169 (218)
T ss_dssp EEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCEEHHHHSS
T ss_pred EEEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC-------CEEEEEECccccccCCCCcchhhccC
Confidence 48999852110 0 011111222221122344443 789999987 45899998765321 1110000
Q ss_pred CCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 246 SSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 246 ~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
..| .. .-++ +...+.+.+|+|=|. ..|.||..+..
T Consensus 170 g~p-~~--idaA-f~~~~~g~~YfFkg~------~y~~~~~~~~~ 204 (218)
T 1gen_A 170 AIP-DN--LDAV-VDLQGGGHSYFFKGA------YYLKLENQSLK 204 (218)
T ss_dssp SCC-SS--CSEE-EECTTTCEEEEEETT------EEEEEETTEEE
T ss_pred CCC-CC--CCEE-EEEcCCCcEEEEECC------EEEEEECCcee
Confidence 011 11 1122 333334788888775 67888875543
No 385
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=44.28 E-value=53 Score=27.51 Aligned_cols=64 Identities=22% Similarity=0.243 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhh-----hhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007111 472 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV-----LKSRQEMEKKLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 472 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~lkek~~~~e 535 (617)
+.+...|.++-..|+.++.-+...+|..+|=+..- |-+-..++.+|+++...++.|+.-+--++
T Consensus 14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q 82 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYE 82 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677778888999999999999855442 32333357788888888877776554433
No 386
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=44.19 E-value=2.7e+02 Score=28.28 Aligned_cols=18 Identities=22% Similarity=0.422 Sum_probs=12.8
Q ss_pred ccEEEEECCcEEEEEccC
Q 007111 151 NHVAALYDDKNLLIFGGS 168 (617)
Q Consensus 151 ~h~a~~~~~~~LyV~GG~ 168 (617)
.|+++.-.+..+|.+|-.
T Consensus 223 ~~t~~l~~~G~v~~wG~n 240 (389)
T 3kci_A 223 AQTLCLTDDDTVWSWGDG 240 (389)
T ss_dssp CEEEEEETTTEEEEEECC
T ss_pred cEEEEEccCCEEEEEeCC
Confidence 567777666669999843
No 387
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=43.94 E-value=1.2e+02 Score=24.42 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=39.1
Q ss_pred HHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007111 473 SKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKL 531 (617)
Q Consensus 473 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~ 531 (617)
.+...|+++--.|.-.+...--.+-|-||+|.+-=.-...|...|+....|++-|.++|
T Consensus 19 ~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 19 RKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34447888888888888877777777777766544444555555666555666666554
No 388
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=43.50 E-value=3.7e+02 Score=29.63 Aligned_cols=180 Identities=15% Similarity=0.132 Sum_probs=91.3
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCC-CCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP-VARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P-~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
++..+..++.++ .+.+||..+ .+..+. ..++ ..+..++++. .++++++.||.++ .+.+||+.+
T Consensus 96 dG~~LAs~s~dg------~V~iwd~~~-~l~~l~--~~~~~~~~sv~svafSPDG~~LAsgs~DG------tVkIWd~~~ 160 (588)
T 2j04_A 96 IDDWMAVLSNNG------NVSVFKDNK-MLTNLD--SKGNLSSRTYHCFEWNPIESSIVVGNEDG------ELQFFSIRK 160 (588)
T ss_dssp SSSCEEEEETTS------CEEEEETTE-EEEECC--CSSCSTTTCEEEEEECSSSSCEEEEETTS------EEEEEECCC
T ss_pred CCCEEEEEeCCC------cEEEEeCCc-eeeecc--CCCccccccEEEEEEcCCCCEEEEEcCCC------EEEEEECCC
Confidence 556666665532 367777444 444443 2233 2333444443 4678888888755 378899887
Q ss_pred Cc--------EEEeecCCCCC-CCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCc----EEEeecCCCCCCCC
Q 007111 134 LT--------WLPLHCTGTGP-SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI----WTRIKIRGFHPSPR 200 (617)
Q Consensus 134 ~~--------W~~l~~~g~~P-~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~----W~~~~~~g~~P~~R 200 (617)
+. ...+. +... ..---.+.+...+. ++.+|.+ +.+..+|+.++. |..+... .. .
T Consensus 161 ~~l~~~~~i~l~ti~--~~~~gh~~~V~sVawSPdg--Laass~D-----~tVrlWd~~~~~~~~~~~tL~~~---h~-~ 227 (588)
T 2j04_A 161 NSENTPEFYFESSIR--LSDAGSKDWVTHIVWYEDV--LVAALSN-----NSVFSMTVSASSHQPVSRMIQNA---SR-R 227 (588)
T ss_dssp CTTTCCCCEEEEEEE--CSCTTCCCCEEEEEEETTE--EEEEETT-----CCEEEECCCSSSSCCCEEEEECC---CS-S
T ss_pred Cccccccceeeeeee--cccccccccEEEEEEcCCc--EEEEeCC-----CeEEEEECCCCccccceeeeccc---cc-C
Confidence 63 23332 1111 01111233344555 5566665 348889987655 3344221 11 1
Q ss_pred cceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCC
Q 007111 201 AGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE 276 (617)
Q Consensus 201 ~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~ 276 (617)
.-.+++..+ .+++.++ . ..+..||+.+..-..... . ....+..+.+.+..++.++++++.+|.
T Consensus 228 ~V~svaFsg-~~LASa~-~-----~tIkLWd~~~~~~~~~~~-g-----h~~~V~~va~~~s~d~~~La~a~edG~ 290 (588)
T 2j04_A 228 KITDLKIVD-YKVVLTC-P-----GYVHKIDLKNYSISSLKT-G-----SLENFHIIPLNHEKESTILLMSNKTSY 290 (588)
T ss_dssp CCCCEEEET-TEEEEEC-S-----SEEEEEETTTTEEEEEEC-S-----CCSCCCEEEETTCSSCEEEEECSSCEE
T ss_pred cEEEEEEEC-CEEEEEe-C-----CeEEEEECCCCeEEEEEc-C-----CCceEEEEEeeeCCCCCEEEEEcCCCC
Confidence 112222234 4444444 1 468999998877644431 1 112233445533344567788876653
No 389
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=43.10 E-value=63 Score=26.28 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=13.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007111 504 SSVLKSRQEMEKKLADSLKEMELLKEK 530 (617)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~lkek 530 (617)
..+++-.++++..|.......+.|.++
T Consensus 59 ~~l~~~l~~~e~eLe~~~erWeeLe~~ 85 (89)
T 2lw1_A 59 QKVLADMAAAEQELEQAFERWEYLEAL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555555555555555443
No 390
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=42.89 E-value=4.1e+02 Score=29.94 Aligned_cols=210 Identities=12% Similarity=0.119 Sum_probs=103.0
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCC-CCcccceEEEEE---CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeec
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLK-IPACRGHSLISW---GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEA 90 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~-~p~r~~hs~v~~---g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 90 (617)
.+++-+-...+|..+...... ..++.. ......++++.. .+.+|+..|..........+++=+-.-.+|+.+..
T Consensus 44 gv~~S~DgG~tW~~~~~~~~~--~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~~~~~~~~~i~~S~DgG~TW~~~~~ 121 (763)
T 3a0f_A 44 GTYRWNAAKWEWEPITDFIIN--NALAGNGANLLGTESIALDPHNPDRLYLAQGDYVQWDPWAAFLVSDDRGKTFKQYRS 121 (763)
T ss_dssp CEEEEETTTTEEEESCTTCBT--TCSSSCCCCCCSEEEEECCTTCTTCEEEEECSCTTTCSCCEEEEESSTTSSCEEEEC
T ss_pred cEEEECCCCCCeeECccCccc--cccCCCcccccceeEEEECCCCCCEEEEEecccccCCCCceEEEECCCCCCceeccC
Confidence 367777777889988752100 000000 011112344332 36788876531111222456665555678999873
Q ss_pred cCCCC---CCcc-eeEEEEE---CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCC---cccEEEEEC--
Q 007111 91 KGDIP---VARS-GHTVVRA---SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR---SNHVAALYD-- 158 (617)
Q Consensus 91 ~g~~P---~~R~-~~s~~~~---~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R---~~h~a~~~~-- 158 (617)
....+ ..|. ...+++. .+.+|+.+ .. ..+++=+-.-.+|+++. .+|... .+...+.++
T Consensus 122 ~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~-~~------~~l~~S~DgG~TW~~~~---~~~~~~~~~~~~~~i~~~p~ 191 (763)
T 3a0f_A 122 PVPMGANDMGRNGGERLAVNPHWTDELWFGS-RT------QGLWRSTDRAQTWSRMN---QLPDSSTYGIGIISVIFDPK 191 (763)
T ss_dssp SSCCCTTSTTTTSBCCEEECTTSTTCEEEEC-SS------SCEEEESSTTSSCEECT---TSCCCSCTTTCEEEEEECSS
T ss_pred CcccCccccCccccceEEECCCCCCEEEEEe-CC------CcEEEECCCCcCccccc---cCcccCCCccceEEEEECCC
Confidence 21111 1232 1234443 25777753 11 23444333346899885 344322 222333332
Q ss_pred -CcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCC-----------------CCCcceEEEEE-CCEEEEEecCC
Q 007111 159 -DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHP-----------------SPRAGCCGVLC-GTKWYIAGGGS 219 (617)
Q Consensus 159 -~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P-----------------~~R~~ha~v~~-~~~IyI~GG~s 219 (617)
...+|+.....+ .+++=+=.-.+|+.+...+... .+...+.++.. ++.+|+.....
T Consensus 192 ~~~~~~~~~~~~g-----~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~ 266 (763)
T 3a0f_A 192 NVGTAYVASHAVG-----GLWVTWDGGANWSQVGGQPTQWSDWTKSIVAASGTAIQSSGPLPIKIALGKNGRLYITYSDA 266 (763)
T ss_dssp STTCEEEEESSTT-----CEEEESSSSSSCEECTTCCCSCCHHHHHHHHHHCCCCSSSSCEEEEEEECTTSCEEEEEESS
T ss_pred CCCEEEEEEeCCC-----eEEEECCCCCCccccCCCccccccccccccccccccccCCCCcceeEEECCCCcEEEEeccC
Confidence 223666543221 2444443456899886432110 23444444433 67888885321
Q ss_pred C---CCccceEEEEECCCCcEEEee
Q 007111 220 R---KKRHAETLIFDILKGEWSVAI 241 (617)
Q Consensus 220 ~---~~~~~~v~~yDl~~~~W~~l~ 241 (617)
. ......+++++-...+|+.+.
T Consensus 267 ~~~~~~~~g~v~rS~D~G~tW~~~~ 291 (763)
T 3a0f_A 267 PGPWGVLYGEVWSYDPTNGNWKHIT 291 (763)
T ss_dssp CSSSCCCCEEEEEEETTTTEEEECC
T ss_pred CCCCCCcceeEEEEeCCCCceEECC
Confidence 0 112356889988889999976
No 391
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=42.51 E-value=2.6e+02 Score=27.58 Aligned_cols=32 Identities=6% Similarity=0.025 Sum_probs=17.2
Q ss_pred CCcEEEEEccCCCCCCCCeEEEEECC-CCcEEE
Q 007111 158 DDKNLLIFGGSSKSKTLNDLYSLDFE-TMIWTR 189 (617)
Q Consensus 158 ~~~~LyV~GG~~~~~~~n~v~~yD~~-t~~W~~ 189 (617)
++++||+..........+.+.+|++. +++...
T Consensus 265 dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~ 297 (365)
T 1jof_A 265 SGKYMFASSRANKFELQGYIAGFKLRDCGSIEK 297 (365)
T ss_dssp TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEE
T ss_pred CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEE
Confidence 45557765422211122368888875 566654
No 392
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=42.30 E-value=2.9e+02 Score=28.12 Aligned_cols=161 Identities=14% Similarity=0.152 Sum_probs=81.7
Q ss_pred CCEEEEEeecCCCCCccCeEEEEECCCCc---EEEeecCCCCCCCCcccEEEEE--CCcEEEEEccCCCCCCCCeEEEEE
Q 007111 107 SSVLILFGGEDGKRRKLNDLHMFDLKSLT---WLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLD 181 (617)
Q Consensus 107 ~~~IYv~GG~~~~~~~~~~v~~yD~~t~~---W~~l~~~g~~P~~R~~h~a~~~--~~~~LyV~GG~~~~~~~n~v~~yD 181 (617)
+|.+||.+.... ..++++++.... |-.- .+.+..+.+....++ ++..|++..+ . ..+++||
T Consensus 147 ~GnaYVt~s~~~-----~~I~rV~pdG~~~~~~~~~---~~~~~~~~G~nGIv~~pdg~~Liv~~~-~-----g~L~~fD 212 (334)
T 2p9w_A 147 DGNSYVAFALGM-----PAIARVSADGKTVSTFAWE---SGNGGQRPGYSGITFDPHSNKLIAFGG-P-----RALTAFD 212 (334)
T ss_dssp TSCEEEEEEESS-----CEEEEECTTSCCEEEEEEC---CCCSSSCCSCSEEEEETTTTEEEEESS-S-----SSEEEEE
T ss_pred CCCEEEeCCCCC-----CeEEEEeCCCCEEeeeeec---CCCcccccCcceEEEeCCCCEEEEEcC-C-----CeEEEEc
Confidence 479999876431 559999998653 5422 223344666655555 3555777766 4 3499999
Q ss_pred CCCCcEEEeecC--CCCCCCCcceEE---EEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCC-CCcceE
Q 007111 182 FETMIWTRIKIR--GFHPSPRAGCCG---VLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVT-SNKGFT 255 (617)
Q Consensus 182 ~~t~~W~~~~~~--g~~P~~R~~ha~---v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~-~r~~~s 255 (617)
+.+.....++.. |... ...+... ...+++++++.-.. +..+++--..+ |............ .-.+++
T Consensus 213 ~~~pv~~~v~~~~~G~~~-~~~~~dgilp~~~~G~vllV~~~~-----~~~~~l~S~Dg-W~sa~~~g~~~~~~~~~g~t 285 (334)
T 2p9w_A 213 VSKPYAWPEPVKINGDFG-TLSGTEKIVTVPVGNESVLVGARA-----PYAISFRSWDN-WKSANIKKTKRSELQNSGFT 285 (334)
T ss_dssp CSSSSCCCEECEESSCCC-CCTTEEEEEEEEETTEEEEEEEET-----TEEEEEECSST-TSEEEEEEEECGGGGSSCEE
T ss_pred CCCCcceeecccccCCcc-cccCcccccccccCCEEEEEEcCC-----CCEEEEECCCC-cceeEEeeeecCccccCcee
Confidence 875433112211 2110 1111222 22588885554322 12344443344 8776543322211 134566
Q ss_pred EEEEe-ecCCcEEEEEcCCCCCC----CCeEEEEECCC
Q 007111 256 LVLVQ-HKEKDFLVAFGGIKKEP----SNQVEVLSIEK 288 (617)
Q Consensus 256 ~v~v~-~~~~~~L~I~GG~~~~~----~~dV~vyd~~~ 288 (617)
.+++. ....+.||++.++-.+. -...-++|+..
T Consensus 286 t~t~~~~~~~~~iYvv~~~f~~~~~g~r~~f~~~di~~ 323 (334)
T 2p9w_A 286 AVADYYQGSEQGLYAVSAFFDNGAHGGRSDYPLYKLDN 323 (334)
T ss_dssp EEEEEEETTEEEEEEEECCGGGTTTSCCCCEEEEECCG
T ss_pred EEEEeccccCCeEEEEeeecCCcccCCcceeechhhhh
Confidence 55441 12347899887653211 34455566544
No 393
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=41.97 E-value=3.1e+02 Score=28.28 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=33.5
Q ss_pred CEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE--CCcEEEEEccCCCCCCCCeEEEEECC
Q 007111 108 SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFE 183 (617)
Q Consensus 108 ~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~--~~~~LyV~GG~~~~~~~n~v~~yD~~ 183 (617)
+.+++.|+.++ .+.+||..+..-.... ... .....++.+ +++ .++.|+.++ .|..||+.
T Consensus 162 ~~~las~s~Dg------~v~iwD~~~~~~~~~~----~~~-~~~v~~v~wspdg~-~lasgs~dg-----~v~iwd~~ 222 (434)
T 2oit_A 162 PSMVAVCLADG------SIAVLQVTETVKVCAT----LPS-TVAVTSVCWSPKGK-QLAVGKQNG-----TVVQYLPT 222 (434)
T ss_dssp TTEEEEEETTS------CEEEEEESSSEEEEEE----ECG-GGCEEEEEECTTSS-CEEEEETTS-----CEEEECTT
T ss_pred CCEEEEEECCC------eEEEEEcCCCcceeec----cCC-CCceeEEEEcCCCC-EEEEEcCCC-----cEEEEccC
Confidence 56777777654 3888998877322111 111 111222333 455 667777664 48999987
No 394
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=41.87 E-value=1.4e+02 Score=28.98 Aligned_cols=58 Identities=12% Similarity=0.131 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHH-------HHHHHHHHHHHHhhh
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLAD-------SLKEMELLKEKLAGL 534 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~lkek~~~~ 534 (617)
.-..++--|-.++......+.+.-.-.++. -..|+.+..|||- ...+.+.+++++.-+
T Consensus 160 ~i~~~LelL~IRK~ma~sEI~EID~KI~~L-------~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~ 224 (242)
T 3uux_B 160 TLVNSLEFLNIQKNSTLSEIRDIEVEVENL-------RQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFL 224 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555544444444 4455556666654 444555566664433
No 395
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=41.70 E-value=1e+02 Score=25.82 Aligned_cols=12 Identities=17% Similarity=0.398 Sum_probs=5.5
Q ss_pred HHHHHHHhhhhh
Q 007111 565 VLDDTQKELHST 576 (617)
Q Consensus 565 ~~~~~~~~~~~~ 576 (617)
++++.+.++...
T Consensus 65 ~i~~~~~~l~~l 76 (112)
T 1l8d_A 65 LLSKYHLDLNNS 76 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 396
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=41.28 E-value=87 Score=27.27 Aligned_cols=35 Identities=20% Similarity=0.166 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhh
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNF 503 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~ 503 (617)
|..+.++..+...++.||.+|+++-..-+.+-+++
T Consensus 46 q~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~ 80 (129)
T 3tnu_B 46 QRLRAEIDNVKKQCANLQNAIADAEQRGELALKDA 80 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666667777777766655544444443
No 397
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=41.28 E-value=1.5e+02 Score=24.28 Aligned_cols=66 Identities=26% Similarity=0.215 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 007111 472 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELA 537 (617)
Q Consensus 472 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~ 537 (617)
+.-++.+-..++.-+..+.+..+-.+.|=|++-.--=-|-++|.+|+-+.|+...|.-|||.+--+
T Consensus 31 ~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~EklAkldLE~RLsKtEKDkAiLELkLaE~~De 96 (101)
T 1d7m_A 31 NSLLASLESEGAEREKRLRELEAKLDETLKNLELEKLARMELEARLAKTEKDRAILELKLAEAIDE 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Confidence 333444444555444445555555555555544433356788888999999999998888876433
No 398
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=41.26 E-value=28 Score=37.60 Aligned_cols=70 Identities=10% Similarity=0.161 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHh---hhhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHhhhH
Q 007111 466 SIYQFYESKMAALIRKNGILEGQLAAALVNREAAE---KNFSSVLKSRQEMEKKLADSLKEME-LLKEKLAGLE 535 (617)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~lkek~~~~e 535 (617)
.|+-+..+.=.++..+-+.|..||++..++.-.++ +++...|+-+|.-.....+...|+- .|++++..++
T Consensus 50 rLQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLK 123 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLK 123 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred chhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Confidence 56666666666666666777777777655554444 4555556666666666666666665 6777777665
No 399
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=41.14 E-value=16 Score=30.38 Aligned_cols=46 Identities=22% Similarity=0.353 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHH
Q 007111 511 QEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVL 566 (617)
Q Consensus 511 ~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (617)
.+.|.|+..-+.||+.++.+|-.||.++-..- -.-|.||+-||.-|
T Consensus 39 ~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmK----------q~YEeEI~rLr~eL 84 (92)
T 3vp9_A 39 KDYDFKMNQQLAEMQQIRNTVYERELTHRKMK----------DAYEEEIKHLKLGL 84 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 48999999999999999999999999974321 12467788877643
No 400
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=41.12 E-value=2.4e+02 Score=26.80 Aligned_cols=66 Identities=11% Similarity=0.105 Sum_probs=37.7
Q ss_pred CCEEEEEecCCCCCccceEEEEECCCCcEEEeecC-CCCCCCC-----CcceEEEEEeecCCcEEEEEcCCCCCCCCeEE
Q 007111 209 GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITS-PSSSVTS-----NKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVE 282 (617)
Q Consensus 209 ~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~-~~~~p~~-----r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~ 282 (617)
++++|+|-| +..|+||....+...-+.. ....|.. ....-++.. ....+++|+|-|. ..|
T Consensus 127 ~gk~yfFkG-------~~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~-~~~~g~~YfFkG~------~yw 192 (225)
T 3oyo_A 127 GKEVYLFKG-------NKYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFA-SHKEPEAYLFKGQ------NYV 192 (225)
T ss_dssp TTEEEEEET-------TEEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEE-CSSTTEEEEEETT------EEE
T ss_pred CCcEEEEeC-------CeEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEE-eCCCCEEEEEECC------EEE
Confidence 789999988 4689999776654431100 0001110 112223333 2234788988885 689
Q ss_pred EEECCC
Q 007111 283 VLSIEK 288 (617)
Q Consensus 283 vyd~~~ 288 (617)
+||..+
T Consensus 193 r~d~~~ 198 (225)
T 3oyo_A 193 RIDFTP 198 (225)
T ss_dssp EEECCT
T ss_pred EEeCCc
Confidence 999873
No 401
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=40.95 E-value=3e+02 Score=27.89 Aligned_cols=218 Identities=10% Similarity=-0.027 Sum_probs=115.3
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeecc
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 91 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 91 (617)
+.+..+++.......+... .....+++.. ++.||+.--. ...++++++.......+...
T Consensus 96 ~~I~~i~~~~~~~~~~~~~-------------~~~~~gl~~d~~~~~ly~~D~~------~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLNN-------------LENAIALDFHHRRELVFWSDVT------LDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp SCEEEECTTSCCCEEEECS-------------CSCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCCEEEEECS
T ss_pred ccceeeccCCCcEEEEecC-------------CCccEEEEEecCCCeEEEEeCC------CCcEEEEecCCCCcEEEEeC
Confidence 3466666666555444321 1112344443 5789987422 23799999988876665422
Q ss_pred CCCCCCcceeEEEE--ECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccC
Q 007111 92 GDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGS 168 (617)
Q Consensus 92 g~~P~~R~~~s~~~--~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~ 168 (617)
+ +. ....+++ .++.||+.-.. .+.++++++....-+.+. ...+..|+ ..++. .+..||+.--.
T Consensus 157 ~-~~---~p~glavd~~~g~lY~~d~~------~~~I~~~~~dg~~~~~l~-~~~l~~P~---giavdp~~g~ly~td~~ 222 (386)
T 3v65_B 157 G-LE---SPGGLAVDWVHDKLYWTDSG------TSRIEVANLDGAHRKVLL-WQSLEKPR---AIALHPMEGTIYWTDWG 222 (386)
T ss_dssp S-CS---CCCCEEEETTTTEEEEEETT------TTEEEECBTTSCSCEEEE-CSSCSCEE---EEEEETTTTEEEEEECS
T ss_pred C-CC---CccEEEEEeCCCeEEEEcCC------CCeEEEEeCCCCceEEee-cCCCCCCc---EEEEEcCCCeEEEeccC
Confidence 1 11 1123334 36889987432 356888888765434332 12222222 33333 24447776322
Q ss_pred CCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE--ECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCC
Q 007111 169 SKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL--CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS 246 (617)
Q Consensus 169 ~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~--~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~ 246 (617)
. ...|+++++....-..+...+ ...-.+++. .+++||+.-... ..++++|++...-..+....
T Consensus 223 ~----~~~I~r~~~dG~~~~~~~~~~----~~~PnGlavd~~~~~lY~aD~~~-----~~I~~~d~dG~~~~~~~~~~-- 287 (386)
T 3v65_B 223 N----TPRIEASSMDGSGRRIIADTH----LFWPNGLTIDYAGRRMYWVDAKH-----HVIERANLDGSHRKAVISQG-- 287 (386)
T ss_dssp S----SCEEEEEETTSCSCEEEECSS----CSCEEEEEEEGGGTEEEEEETTT-----TEEEEECTTSCSCEEEECSS--
T ss_pred C----CCEEEEEeCCCCCcEEEEECC----CCCeeeEEEeCCCCEEEEEECCC-----CEEEEEeCCCCeeEEEEECC--
Confidence 1 356999998765444433221 111123444 378999985432 56999998754333332111
Q ss_pred CCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 247 SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 247 ~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
...-+++++ . .+.||+..-. .+.|.+++..+.+
T Consensus 288 ---~~~P~giav-~---~~~ly~td~~----~~~V~~~~~~~G~ 320 (386)
T 3v65_B 288 ---LPHPFAITV-F---EDSLYWTDWH----TKSINSANKFTGK 320 (386)
T ss_dssp ---CSSEEEEEE-E---TTEEEEEETT----TTEEEEEETTTCC
T ss_pred ---CCCceEEEE-E---CCEEEEeeCC----CCeEEEEECCCCc
Confidence 112244444 2 3678877532 3478889865544
No 402
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=40.75 E-value=22 Score=31.95 Aligned_cols=116 Identities=15% Similarity=0.221 Sum_probs=71.8
Q ss_pred HhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHH---HHHHHHHHHHHHHHHHHHhhhHHhHHhhhc---ccc-------c
Q 007111 481 KNGILEGQLAAALVNREAAEKNFSSVLKSRQEM---EKKLADSLKEMELLKEKLAGLELAQEEANS---LSN-------I 547 (617)
Q Consensus 481 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~lkek~~~~e~~qe~~~~---~~~-------~ 547 (617)
|.+.++.+|....+.+.+.+..+..+..+++.+ +.++.+..+-.+.| ..++. +...- |++ +
T Consensus 3 ~m~~~~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l----~~l~~--~~~~ilvplg~~~yv~g~i 76 (151)
T 2zdi_C 3 RMAQNNKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENL----KKIEE--EKPEILVPIGAGSFLKGVI 76 (151)
T ss_dssp -CCSSTTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCCC--SSCEEEEECSSSCEEEEEC
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhccc--CCceEEEEcCCCeEEEEEE
Confidence 445677788888888888888888888888888 77766654444333 33321 11111 111 1
Q ss_pred ccCC--------Ccchhhh----HHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHh
Q 007111 548 VHSD--------NVRLEHD----VAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQ 602 (617)
Q Consensus 548 ~~~~--------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (617)
++.+ |+=+|.+ ++||+.=++...+.+......++-=|++.=.+++.+..|-+.+|
T Consensus 77 ~~~~~V~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~ 143 (151)
T 2zdi_C 77 VDKNNAIVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQS 143 (151)
T ss_dssp SCTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTT
T ss_pred CCCCEEEEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222 5656644 56666666777777777777777777777677777766665544
No 403
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=40.67 E-value=1.6e+02 Score=31.61 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=8.0
Q ss_pred hhhHHHHHHHHHHHHH
Q 007111 556 EHDVAFLKAVLDDTQK 571 (617)
Q Consensus 556 ~~~~~~~~~~~~~~~~ 571 (617)
+..++.|+++++...+
T Consensus 167 ~~~i~~L~~~~~~l~~ 182 (464)
T 1m1j_B 167 PSSLRVLRAVIDSLHK 182 (464)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3445555555554443
No 404
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=40.33 E-value=1.1e+02 Score=29.34 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhh
Q 007111 522 KEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELH 574 (617)
Q Consensus 522 ~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (617)
.+.+.+++++..++.+=++ + |.+-+++-++++++-++
T Consensus 172 ~~k~~i~~~l~~~~~~L~~----------~------~~~~i~~~~~~L~~~~~ 208 (219)
T 4e81_A 172 DDKTAIESALTALETALKG----------E------DKAAIEAKMQELAQVSQ 208 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHS----------S------CHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHhc----------C------CHHHHHHHHHHHHHHHH
Confidence 4566677777777665332 1 44556666666665443
No 405
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=40.24 E-value=43 Score=32.19 Aligned_cols=13 Identities=8% Similarity=0.141 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHhh
Q 007111 561 FLKAVLDDTQKEL 573 (617)
Q Consensus 561 ~~~~~~~~~~~~~ 573 (617)
.++-|.+..+|+|
T Consensus 173 mv~wV~~~V~k~i 185 (214)
T 2cly_A 173 MINWVEKRVVQSI 185 (214)
T ss_dssp HHHHHHHHHTC--
T ss_pred HHHHHHHHHHHhc
Confidence 3444555555544
No 406
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=40.16 E-value=4.8e+02 Score=29.94 Aligned_cols=201 Identities=12% Similarity=0.069 Sum_probs=95.1
Q ss_pred CEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCC
Q 007111 57 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSL 134 (617)
Q Consensus 57 ~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~ 134 (617)
+++++.|+.+ ..+.++|+.+..-...- ..+ ....++.+ ++.+++.|+.++ .+.+||..+.
T Consensus 69 g~~L~S~s~D------~~v~lWd~~~~~~~~~~---~~~---~~V~~v~~sp~g~~l~sgs~dg------~V~lwd~~~~ 130 (902)
T 2oaj_A 69 GIYLVVINAK------DTVYVLSLYSQKVLTTV---FVP---GKITSIDTDASLDWMLIGLQNG------SMIVYDIDRD 130 (902)
T ss_dssp TTEEEEEETT------CEEEEEETTTCSEEEEE---ECS---SCEEEEECCTTCSEEEEEETTS------CEEEEETTTT
T ss_pred CCEEEEEECc------CeEEEEECCCCcEEEEE---cCC---CCEEEEEECCCCCEEEEEcCCC------cEEEEECCCC
Confidence 4444555432 36888898876533221 111 11222222 456666666543 4889999887
Q ss_pred cEEEeecCC-----CCCCCCc--ccEEEEEC-CcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCC---CCCC----
Q 007111 135 TWLPLHCTG-----TGPSPRS--NHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGF---HPSP---- 199 (617)
Q Consensus 135 ~W~~l~~~g-----~~P~~R~--~h~a~~~~-~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~---~P~~---- 199 (617)
.-....... ..+.... -.+++... +..+++.|+.++ .+ .||+.++.....-.... .|..
T Consensus 131 ~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg-----~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~ 204 (902)
T 2oaj_A 131 QLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYV-----TL-TYSLVENEIKQSFIYELPPFAPGGDFSE 204 (902)
T ss_dssp EEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSC-----EE-EEETTTTEEEEEECCCBCTTCCCSTTCC
T ss_pred ccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCC-----cE-EEECCCCceEEEEecccCCcCCCccccc
Confidence 653221100 0011111 11333333 223666666553 47 99998876554322100 0100
Q ss_pred ------Cc-ceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCC---CCC-----CC----CCcceEEEEE
Q 007111 200 ------RA-GCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSP---SSS-----VT----SNKGFTLVLV 259 (617)
Q Consensus 200 ------R~-~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~---~~~-----p~----~r~~~s~v~v 259 (617)
.. -.+++.. ++..++.|+..+ .+.+||+.+.+........ ... +. .......+.+
T Consensus 205 ~~~~~h~~~V~~v~fspdg~~lasgs~Dg-----~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w 279 (902)
T 2oaj_A 205 KTNEKRTPKVIQSLYHPNSLHIITIHEDN-----SLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYW 279 (902)
T ss_dssp CTTSCBCCCEEEEEECTTSSEEEEEETTC-----CEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEE
T ss_pred ccccccCCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEE
Confidence 01 1222222 567777777653 4889999877654321110 000 00 1112344444
Q ss_pred eec---CCcEEEEEcCCCCCC-CCeEEEEEC
Q 007111 260 QHK---EKDFLVAFGGIKKEP-SNQVEVLSI 286 (617)
Q Consensus 260 ~~~---~~~~L~I~GG~~~~~-~~dV~vyd~ 286 (617)
... +...+++.||.+... ...+.+++.
T Consensus 280 ~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 280 MCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp EECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred EecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 321 224788888875322 245666663
No 407
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=40.12 E-value=96 Score=26.66 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=11.3
Q ss_pred hhhHhHHHHhhcHHHHhh
Q 007111 484 ILEGQLAAALVNREAAEK 501 (617)
Q Consensus 484 ~~~~q~~~~~~~~~~~~~ 501 (617)
.|+.||+-|..++-++|-
T Consensus 29 lLq~qLTqAQe~l~~~ea 46 (121)
T 3mq7_A 29 LLQQELTEAQKGFQDVEA 46 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356677777666665553
No 408
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=39.09 E-value=76 Score=26.70 Aligned_cols=57 Identities=25% Similarity=0.373 Sum_probs=40.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH----HhhhHHhHHhhhcccccccCCCc-chhhhHHHHHHHHHHHHHhhh
Q 007111 507 LKSRQEMEKKLADSLKEMELLKEK----LAGLELAQEEANSLSNIVHSDNV-RLEHDVAFLKAVLDDTQKELH 574 (617)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~lkek----~~~~e~~qe~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 574 (617)
..-|+..|++|..+.+++|.||.| +..+-+| |+..+ -++|-|--+|.-|++...+|+
T Consensus 20 ~~kk~~aekql~~A~e~~eKl~KKrsS~~gs~~~a-----------hs~slD~vD~~Il~Ak~aL~evt~~l~ 81 (101)
T 3teq_A 20 NIKKQNAEKQLMVAKEGAEKIKKKRNTLFGTFHVA-----------HSSSLDDVDHKILTAKQALSEATAALR 81 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH-----------TCGGGGGTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHHHHhhhchheeeehh-----------cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888899888 3334443 43332 245888889999999998776
No 409
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=38.95 E-value=1.4e+02 Score=32.57 Aligned_cols=86 Identities=9% Similarity=0.020 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhh----------------------------------------
Q 007111 466 SIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSS---------------------------------------- 505 (617)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~---------------------------------------- 505 (617)
.|+..-+.+.+..-.++...|.+|+.|+..+++|++.|.+
T Consensus 32 ~~~~~l~~~~~~i~~~k~~~e~dLa~A~PaL~~A~~AL~~L~k~di~Elks~~~PP~~V~~vmeaV~iLl~~~~~~W~~a 111 (536)
T 3err_A 32 AVDEQLHKQQEVIADKQMSVKEDLDKVEPAVIEAQNAVKSIKKQHLVEVRSMANPPAAVKLALESIALLLGESTTDWKQI 111 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHTCSSCCHHHHHHHHHHHHHTTCSCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCCCHHHH
Q ss_pred -----------------------------------------------------------hhhhHHHHHHHHHHHHHHHHH
Q 007111 506 -----------------------------------------------------------VLKSRQEMEKKLADSLKEMEL 526 (617)
Q Consensus 506 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~ 526 (617)
++-.+.++.++++.+..++..
T Consensus 112 k~~L~~~~Fl~~L~~fdkd~I~~~~~~~l~~~y~~~p~F~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~l~~eV~pLk~eLk~ 191 (536)
T 3err_A 112 RSIIMRENFIPTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQK 191 (536)
T ss_dssp TTGGGCTTHHHHHHHCCGGGCCHHHHHHHHHHTTTSTTCSHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHhcCcccCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhhhHHHHHH
Q ss_pred HHHHHhhhHHhH-HhhhcccccccCC
Q 007111 527 LKEKLAGLELAQ-EEANSLSNIVHSD 551 (617)
Q Consensus 527 lkek~~~~e~~q-e~~~~~~~~~~~~ 551 (617)
|++++..++..- +....|-|++|.+
T Consensus 192 lE~eL~e~e~eL~~lll~ipN~~~~~ 217 (536)
T 3err_A 192 LEDDAKDNQQKLEALLLQVPLPPWPG 217 (536)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCTT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCC
No 410
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=38.80 E-value=1.2e+02 Score=32.28 Aligned_cols=51 Identities=14% Similarity=0.244 Sum_probs=38.2
Q ss_pred HHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHH
Q 007111 473 SKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKE 523 (617)
Q Consensus 473 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (617)
-|++++.----.+..|+.+.....-+|+.+|.-.++-+.-+|.+++.+.+.
T Consensus 363 NEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~K 413 (602)
T 1cii_A 363 NKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQK 413 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 355555555667778999999999999999888887777777777654443
No 411
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=37.44 E-value=1.1e+02 Score=24.72 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSL 521 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (617)
.+...++..|..+|..|.++...|..++++.+....-.=..+..-+.+|...+
T Consensus 23 ~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 23 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888999999888888888887776654444333444444444433
No 412
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=37.40 E-value=4.5 Score=28.77 Aligned_cols=11 Identities=55% Similarity=0.712 Sum_probs=4.9
Q ss_pred CcchhhhHHHH
Q 007111 552 NVRLEHDVAFL 562 (617)
Q Consensus 552 ~~~~~~~~~~~ 562 (617)
|-.||.|+|-|
T Consensus 33 nanlekdianl 43 (56)
T 3he4_A 33 NANLEKDIANL 43 (56)
T ss_dssp HHHHHHHHHHH
T ss_pred cchHHHHHHHH
Confidence 44444444444
No 413
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=37.37 E-value=1.6e+02 Score=31.46 Aligned_cols=13 Identities=15% Similarity=0.422 Sum_probs=6.5
Q ss_pred HHHHHHHHHHhhh
Q 007111 522 KEMELLKEKLAGL 534 (617)
Q Consensus 522 ~~~~~lkek~~~~ 534 (617)
++++.++.|+..+
T Consensus 185 k~~eK~~~k~~k~ 197 (486)
T 3haj_A 185 EQLKKLQDKIEKC 197 (486)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555443
No 414
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=37.32 E-value=1.7e+02 Score=23.80 Aligned_cols=48 Identities=13% Similarity=0.219 Sum_probs=27.3
Q ss_pred hHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007111 486 EGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAG 533 (617)
Q Consensus 486 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~ 533 (617)
+.++.+.-.....+..++.-.-+.|.+|+.+....+.|...|-+.++.
T Consensus 13 eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~e 60 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQ 60 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444455555555555566666666666666666666555333
No 415
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=37.23 E-value=1.3e+02 Score=28.78 Aligned_cols=147 Identities=10% Similarity=0.027 Sum_probs=74.3
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCC----CcEEEe--ecc---CCCC-----CCcceeEEEEECCEEEEEeecCCCCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTET----ECWSVV--EAK---GDIP-----VARSGHTVVRASSVLILFGGEDGKRR 121 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t----~~W~~~--~~~---g~~P-----~~R~~~s~~~~~~~IYv~GG~~~~~~ 121 (617)
++.+|+|=|. .+|+++... .....- .+. ..+| +.....+.-..++.+|+|-|
T Consensus 15 ~ge~yfFkg~--------~~wr~~~~~~~~~~~~~~~P~~I~~~W~~Lp~~~f~p~~iDaaf~~~~g~~~fFKg------ 80 (227)
T 3lp9_A 15 NNEAYFFIND--------KYVLLDYAPGSSRDKVLYGPTPVRDGFKSLNQTIFGSYGIDCSFDTENNEAFIFYE------ 80 (227)
T ss_dssp TTEEEEEETT--------EEEEEECCTTSSCCEEEEEEEEHHHHSGGGTTSHHHHHCCSEEEECSTTEEEEEET------
T ss_pred CCeEEEEECC--------EEEEEeCCCCCccccccCCceEHhhcCCcCCcccCCCCCceEEEECCCCEEEEEeC------
Confidence 6899999664 488887632 122111 111 1232 23334333345789999965
Q ss_pred ccCeEEEEE--CCCCcEE------EeecC-CCCC----CCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcE
Q 007111 122 KLNDLHMFD--LKSLTWL------PLHCT-GTGP----SPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIW 187 (617)
Q Consensus 122 ~~~~v~~yD--~~t~~W~------~l~~~-g~~P----~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W 187 (617)
+.+|+|+ +.+.... .+... ..+| ..... ++... .+..+|+|-|. ..|+||..+++-
T Consensus 81 --~~~Wr~~~~~~~~~~~~~~gP~~I~~~w~gLp~~~~p~~ID-AA~~~~~~~k~yfFkG~-------~yw~~d~~~~~~ 150 (227)
T 3lp9_A 81 --NFCALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFESGID-AAYRSTRGKEVYLFKGD-------QYARIDYGSNSM 150 (227)
T ss_dssp --TEEEEEECCTTTCCCEEEEEEEEHHHHSGGGTTSTTTTCCS-EEEECSSTTEEEEEETT-------EEEEEETTTTEE
T ss_pred --CEEEEEeCCCCccccccccCceEHhhhcCCCCCccCCCccc-EEEEECCCCEEEEEECC-------EEEEEeCCCccc
Confidence 3578888 3211111 11000 1232 12222 33333 23349999874 489999865432
Q ss_pred EE-----eecCCCCCC------CCcceEEEE--ECCEEEEEecCCCCCccceEEEEECCCC
Q 007111 188 TR-----IKIRGFHPS------PRAGCCGVL--CGTKWYIAGGGSRKKRHAETLIFDILKG 235 (617)
Q Consensus 188 ~~-----~~~~g~~P~------~R~~ha~v~--~~~~IyI~GG~s~~~~~~~v~~yDl~~~ 235 (617)
.. +. .+ .|. +..-.++.. .++++|+|-| +.-|+||....
T Consensus 151 ~~gyPk~i~-~g-~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg-------~~Ywr~d~~~~ 202 (227)
T 3lp9_A 151 VNKEIKSIS-SG-YPCFRNTIFESGADAAFASHKTNEVYFFKD-------DHYARVKVTPX 202 (227)
T ss_dssp SSSSCEEHH-HH-CGGGTTSGGGGCCSEEEECSSTTEEEEEET-------TEEEEEECCSS
T ss_pred cCCCCeEHH-HC-CCCccccccCCCccEEEEcCCCceEEEEEC-------CEEEEEECCcc
Confidence 11 10 01 111 122234443 3689999987 45899998765
No 416
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=37.13 E-value=3.5e+02 Score=27.44 Aligned_cols=146 Identities=4% Similarity=-0.049 Sum_probs=79.4
Q ss_pred ECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECC
Q 007111 55 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLK 132 (617)
Q Consensus 55 ~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~ 132 (617)
.++.||+.-.. ...++++++....-..+.. ..+ .....+++. ++.||+.--. ....++++++.
T Consensus 169 ~~g~lY~~d~~------~~~I~~~~~dg~~~~~l~~-~~l---~~P~giavdp~~g~ly~td~~-----~~~~I~r~~~d 233 (386)
T 3v65_B 169 VHDKLYWTDSG------TSRIEVANLDGAHRKVLLW-QSL---EKPRAIALHPMEGTIYWTDWG-----NTPRIEASSMD 233 (386)
T ss_dssp TTTEEEEEETT------TTEEEECBTTSCSCEEEEC-SSC---SCEEEEEEETTTTEEEEEECS-----SSCEEEEEETT
T ss_pred CCCeEEEEcCC------CCeEEEEeCCCCceEEeec-CCC---CCCcEEEEEcCCCeEEEeccC-----CCCEEEEEeCC
Confidence 37889987532 2368888887654333321 111 222344454 5788887321 13679999988
Q ss_pred CCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCE
Q 007111 133 SLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTK 211 (617)
Q Consensus 133 t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~ 211 (617)
...-..+.. ..+..| .+.++- .+..||+.-.. .+.|+++|+....-..+...+ .+ .-.++++.++.
T Consensus 234 G~~~~~~~~-~~~~~P---nGlavd~~~~~lY~aD~~-----~~~I~~~d~dG~~~~~~~~~~-~~---~P~giav~~~~ 300 (386)
T 3v65_B 234 GSGRRIIAD-THLFWP---NGLTIDYAGRRMYWVDAK-----HHVIERANLDGSHRKAVISQG-LP---HPFAITVFEDS 300 (386)
T ss_dssp SCSCEEEEC-SSCSCE---EEEEEEGGGTEEEEEETT-----TTEEEEECTTSCSCEEEECSS-CS---SEEEEEEETTE
T ss_pred CCCcEEEEE-CCCCCe---eeEEEeCCCCEEEEEECC-----CCEEEEEeCCCCeeEEEEECC-CC---CceEEEEECCE
Confidence 654444321 112111 133433 34458887432 357999998654333332221 11 12455567889
Q ss_pred EEEEecCCCCCccceEEEEECC
Q 007111 212 WYIAGGGSRKKRHAETLIFDIL 233 (617)
Q Consensus 212 IyI~GG~s~~~~~~~v~~yDl~ 233 (617)
+|+..-.+ ..++++|..
T Consensus 301 ly~td~~~-----~~V~~~~~~ 317 (386)
T 3v65_B 301 LYWTDWHT-----KSINSANKF 317 (386)
T ss_dssp EEEEETTT-----TEEEEEETT
T ss_pred EEEeeCCC-----CeEEEEECC
Confidence 99985322 458888843
No 417
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=37.12 E-value=75 Score=26.39 Aligned_cols=58 Identities=14% Similarity=0.228 Sum_probs=34.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhhhc
Q 007111 506 VLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTR 577 (617)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (617)
+++--+++|+.-+.+..+++.|++....++.-.++ .=+|-.-++.-+-++|.|++|..
T Consensus 23 L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~--------------~w~eyn~~~~ql~e~~dE~~Sl~ 80 (96)
T 3q8t_A 23 LIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQ--------------YQREYSEFKRQQLELDDELKSVE 80 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666677777777666655433222 23445556666667777777654
No 418
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=37.09 E-value=5.2e+02 Score=29.45 Aligned_cols=147 Identities=10% Similarity=-0.068 Sum_probs=84.3
Q ss_pred ECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECC
Q 007111 55 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLK 132 (617)
Q Consensus 55 ~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~ 132 (617)
++++||+.-.. ...|+++++.......+... .+.. ...+++. ++.||+.-- + ....|+++++.
T Consensus 481 ~~~~LY~tD~~------~~~I~v~~ldG~~~~~l~~~-~l~~---P~gIaVDp~~g~LYwtD~----g-~~~~I~~~~~d 545 (791)
T 3m0c_C 481 IHSNIYWTDSV------LGTVSVADTKGVKRKTLFRE-NGSK---PRAIVVDPVHGFMYWTDW----G-TPAKIKKGGLN 545 (791)
T ss_dssp TTTEEEEEETT------TTEEEEEETTSSSEEEEEEC-TTCC---EEEEEEETTTTEEEEEEC----S-SSCEEEEEETT
T ss_pred cCCcEEEEecC------CCeEEEEeCCCCeEEEEEeC-CCCC---cceEEEecCCCCEEEecC----C-CCCeEEEEecC
Confidence 36789988432 24799999887765555321 2222 3345553 578998741 1 12579999998
Q ss_pred CCcEEEeecCCCCCCCCcccEEEEE--CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecC-CCCCCCCcceEEEEEC
Q 007111 133 SLTWLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR-GFHPSPRAGCCGVLCG 209 (617)
Q Consensus 133 t~~W~~l~~~g~~P~~R~~h~a~~~--~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~-g~~P~~R~~ha~v~~~ 209 (617)
...-..+- ...+. ......+ .+..||+.-.. .+.|+++|+....-..+... +..+ ..+++++.+
T Consensus 546 G~~~~~lv-~~~l~----~P~GLavD~~~~~LYwaD~~-----~~~I~~~d~dG~~~~~v~~~~~~l~---~P~glav~~ 612 (791)
T 3m0c_C 546 GVDIYSLV-TENIQ----WPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDEKRLA---HPFSLAVFE 612 (791)
T ss_dssp SCCEEEEE-CSSCS----CEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEEECTTTTS---SEEEEEEET
T ss_pred CCceEEEE-eCCCC----CceEEEEecCCCeEEEEeCC-----CCcEEEEecCCCceEEEecCCCccC---CCCEEEEeC
Confidence 76555442 12222 2233333 34458887432 35799999965443333321 1122 234667789
Q ss_pred CEEEEEecCCCCCccceEEEEECCC
Q 007111 210 TKWYIAGGGSRKKRHAETLIFDILK 234 (617)
Q Consensus 210 ~~IyI~GG~s~~~~~~~v~~yDl~~ 234 (617)
++||+.-..+ ..|+++|..+
T Consensus 613 ~~lYwtD~~~-----~~I~~~dk~t 632 (791)
T 3m0c_C 613 DKVFWTDIIN-----EAIFSANRLT 632 (791)
T ss_dssp TEEEEEETTT-----TEEEEEETTT
T ss_pred CEEEEEECCC-----CEEEEEeCCC
Confidence 9999986433 4577887544
No 419
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=37.00 E-value=44 Score=21.03 Aligned_cols=16 Identities=44% Similarity=0.445 Sum_probs=10.9
Q ss_pred HhHHHHhhcHHHHhhh
Q 007111 487 GQLAAALVNREAAEKN 502 (617)
Q Consensus 487 ~q~~~~~~~~~~~~~~ 502 (617)
.||.+.++++|+-.|.
T Consensus 2 dqlnallasleaenkq 17 (31)
T 1p9i_A 2 DQLNALLASLEAENKQ 17 (31)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4788888888765443
No 420
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=36.86 E-value=7.7 Score=33.95 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007111 507 LKSRQEMEKKLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~lkek~~~~e 535 (617)
++--|+...||..+..+...|.+|.-.++
T Consensus 8 ~~ELqEsqskL~~Ae~~k~~Leek~~~~e 36 (130)
T 3cl3_D 8 LGELQESQSRLEAATKECQALEGRARAAS 36 (130)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 421
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=36.69 E-value=1.1e+02 Score=26.62 Aligned_cols=37 Identities=14% Similarity=0.056 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhh
Q 007111 468 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFS 504 (617)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~ 504 (617)
+|..+.++..+...++.||.+|+++-..-+.+-++..
T Consensus 47 iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q 83 (131)
T 3tnu_A 47 MQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQ 83 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888888888888888777666555544433
No 422
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=36.52 E-value=18 Score=40.09 Aligned_cols=16 Identities=31% Similarity=0.314 Sum_probs=10.1
Q ss_pred cchhhHHHHHHHHhhh
Q 007111 589 QLQVEVFHLKQRLQSL 604 (617)
Q Consensus 589 ~~~~~~~~~~~~~~~~ 604 (617)
+||=.+..|+.-|.++
T Consensus 515 ~lq~qL~~L~~el~~~ 530 (575)
T 2i1j_A 515 RLHNQLKALKQDLARS 530 (575)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555566777766664
No 423
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=36.43 E-value=1e+02 Score=24.83 Aligned_cols=31 Identities=26% Similarity=0.245 Sum_probs=21.8
Q ss_pred HHHHHHHHhchhhHhHHHHhhcHHHHhhhhh
Q 007111 474 KMAALIRKNGILEGQLAAALVNREAAEKNFS 504 (617)
Q Consensus 474 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~ 504 (617)
++..+...++.||.+|+++-..-+.+-+++.
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q 32 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQ 32 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777888888888887776665554443
No 424
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=36.26 E-value=67 Score=27.37 Aligned_cols=35 Identities=11% Similarity=0.076 Sum_probs=17.8
Q ss_pred hHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 007111 488 QLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLK 522 (617)
Q Consensus 488 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (617)
+++...+.+.+||+-|..-.....+|+.+++...+
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~ 59 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKI 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555555555444
No 425
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=36.26 E-value=2.3e+02 Score=31.62 Aligned_cols=154 Identities=14% Similarity=0.207 Sum_probs=76.5
Q ss_pred eEEEEECCEEEEEcccCCCCCCceEEEEEECCCC-cEEEeeccC---CCCCCcceeEEEE-ECCEEEEEeecCCCCCccC
Q 007111 50 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETE-CWSVVEAKG---DIPVARSGHTVVR-ASSVLILFGGEDGKRRKLN 124 (617)
Q Consensus 50 hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~~g---~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~ 124 (617)
-+++...+++|+|=|. .+|+++.... ......+.. .+| ....++... .++++|+|=| +
T Consensus 447 DAit~~rg~~yfFKg~--------~yWr~~~~~~~~~~P~~Is~~wp~LP-~~IDAA~~~~~~~k~yFFkG--------~ 509 (631)
T 1ck7_A 447 DGIAQIRGEIFFFKDR--------FIWRTVTPRDKPMGPLLVATFWPELP-EKIDAVYEAPQEEKAVFFAG--------N 509 (631)
T ss_dssp SEEEECSSSEEEECSS--------EEEEESCTTSCCEEEEEGGGTCTTSC-SSCSBCCEETTTTEEEEEET--------T
T ss_pred ceeEecCCcEEEEcCC--------EEEEEcCCCCCCCCceeccccCCCCC-ccceEEEEECCCCEEEEEec--------C
Confidence 4566678899999764 5899886552 233322221 223 233333322 2578999843 4
Q ss_pred eEEEEECCCC--cE-EEeecCCCCCCC--CcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEe----ecCCC
Q 007111 125 DLHMFDLKSL--TW-LPLHCTGTGPSP--RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRI----KIRGF 195 (617)
Q Consensus 125 ~v~~yD~~t~--~W-~~l~~~g~~P~~--R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~----~~~g~ 195 (617)
.+|+|+..+- .+ +.+... .+|.. +...+...-.+..+|+|-|. ..|+||..+..-..- ....-
T Consensus 510 ~yWry~~~~l~~GYPk~Is~~-G~P~~~~~IDAAf~~~~~gktYFFkG~-------~ywryd~~~~~vd~gYPk~i~~~w 581 (631)
T 1ck7_A 510 EYWIYSASTLERGYPKPLTSL-GLPPDVQRVDAAFNWSKNKKTYIFAGD-------KFWRYNEVKKKMDPGFPKLIADAW 581 (631)
T ss_dssp EEEEEETTEECTTCCEEGGGG-TCCTTCCCCCBCCCCTTTCEEEEEETT-------EEEEEETTTTEECTTCCEETTTSC
T ss_pred EEEEECCCccccCCCccchhc-CCCCCCCcceeEEEecCCCeEEEEECC-------EEEEEcCCcccccCCCCcchHhhc
Confidence 5788885210 01 112110 12221 22222111133348999774 589999866532210 00000
Q ss_pred CCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCC
Q 007111 196 HPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKG 235 (617)
Q Consensus 196 ~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~ 235 (617)
+..|..-.++... ++++|+|-| +..|+||....
T Consensus 582 ~G~p~~iDAAf~~~~~g~~YFFkG-------~~Ywr~d~~~~ 616 (631)
T 1ck7_A 582 NAIPDNLDAVVDLQGGGHSYFFKG-------AYYLKLENQSL 616 (631)
T ss_dssp SSCCTTCCEEECCTTSCBCEEEET-------TEEECCBTTBT
T ss_pred CCCCCCCcEeEEEcCCCeEEEEEC-------CEEEEEeCccc
Confidence 1112222344443 378999977 34778876544
No 426
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=36.16 E-value=90 Score=33.03 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=35.4
Q ss_pred chHHHHHHHHHHHHHHHhchhhHhHHHH----hhcHHHHhhhhhhhhhhHHHHHHHHHHH
Q 007111 465 SSIYQFYESKMAALIRKNGILEGQLAAA----LVNREAAEKNFSSVLKSRQEMEKKLADS 520 (617)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (617)
+++.+....++..+-..+..+|.|-+.+ .++.+..||+++-..+-.||+|..+...
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (471)
T 3mq9_A 396 RNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTL 455 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777777777776643 5666777777666665555555544433
No 427
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=35.76 E-value=33 Score=35.10 Aligned_cols=40 Identities=13% Similarity=0.087 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHH
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQ 511 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 511 (617)
.+....+. .....++.+|+.+.+.+++|+..+..+-+..+
T Consensus 62 ~ld~~~~~---~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~ 101 (369)
T 4dk0_A 62 EIDSTTQI---NTLNTRKAALASYQAQLVARKTAYDVALSNYQ 101 (369)
T ss_dssp ECCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred EEcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45444433 33344555666666666666555555443333
No 428
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=35.75 E-value=1.2e+02 Score=23.79 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHHHhhhhhccch
Q 007111 556 EHDVAFLKAVLDDTQKELHSTRGVL 580 (617)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (617)
|-++....+.+.++|.|||--|-|+
T Consensus 46 Ek~L~ekd~eI~~LqseLDKfrSVl 70 (72)
T 3nmd_A 46 ELELDQKDELIQMLQNELDKYRSVI 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccC
Confidence 4455666666667777777666554
No 429
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=35.67 E-value=1.4e+02 Score=22.52 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=19.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007111 500 EKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 534 (617)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~ 534 (617)
|+|-..|.++|+.=...+.+...+++.|+..-+.|
T Consensus 8 erNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L 42 (63)
T 2wt7_A 8 ERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSAL 42 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777655555555555555554444433
No 430
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=35.42 E-value=3.3e+02 Score=26.74 Aligned_cols=187 Identities=8% Similarity=-0.049 Sum_probs=87.5
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 135 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~ 135 (617)
++.+.+.||.+ ..+.++|..+++-...- ..+.+ -.++....+.+++.. -+.+.+||..+..
T Consensus 70 ~~~~~~~~~~d------~~v~iWd~~~~~~~~~~---~~~~~--v~~v~~~~~~~~~~~--------~~~i~i~d~~~~~ 130 (355)
T 3vu4_A 70 TNYVAFVTGVK------EVVHIWDDVKKQDVSRI---KVDAP--VKDLFLSREFIVVSY--------GDVISVFKFGNPW 130 (355)
T ss_dssp SSEEEEECSST------TEEEEEETTTTEEEEEE---ECSSC--EEEEEECSSEEEEEE--------TTEEEEEESSTTC
T ss_pred CCEEEEEECCc------cEEEEEECCCCcEEEEE---ECCCc--eEEEEEcCCEEEEEE--------cCEEEEEECCCCc
Confidence 45566777653 27889999887643322 11221 122223344544432 2458899987651
Q ss_pred EEEeecCCCCCCCCcccEEEEECCcEEEEE-ccCCCCCCCCeEEEEECCCCc-EEE-------------eecCCCCCCCC
Q 007111 136 WLPLHCTGTGPSPRSNHVAALYDDKNLLIF-GGSSKSKTLNDLYSLDFETMI-WTR-------------IKIRGFHPSPR 200 (617)
Q Consensus 136 W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~-GG~~~~~~~n~v~~yD~~t~~-W~~-------------~~~~g~~P~~R 200 (617)
..+. .+.. ....+.+....+.+. |+.++ .+..||+.+.. +.. +.... ....
T Consensus 131 -~~~~---~~~~---~~~~~~~s~~~la~~sg~~~g-----~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~--~h~~ 196 (355)
T 3vu4_A 131 -KRIT---DDIR---FGGVCEFSNGLLVYSNEFNLG-----QIHITKLQSSGSATTQDQGVQQKAILGKGVLIK--AHTN 196 (355)
T ss_dssp -CBSS---CCEE---EEEEEEEETTEEEEEESSCTT-----CEEEEECCC------------------CCEEEC--CCSS
T ss_pred -eeeE---Eecc---CCceEEEEccEEEEeCCCcCc-----EEEEEECCCCCccccccccccccccCcccEEEE--ccCC
Confidence 1111 1111 112222222524444 44443 48899987653 110 11110 0011
Q ss_pred cceEEEEE-CCEEEEEecCCCCCccce-EEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCC
Q 007111 201 AGCCGVLC-GTKWYIAGGGSRKKRHAE-TLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPS 278 (617)
Q Consensus 201 ~~ha~v~~-~~~IyI~GG~s~~~~~~~-v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~ 278 (617)
.-.+++.. ++.+++.|+.. .. +.++|+.+..-...-.. .. .......+.+.. ++.+++.|+.+
T Consensus 197 ~v~~~~~s~~g~~l~s~s~d-----~~~v~iwd~~~~~~~~~~~~-g~---h~~~v~~~~~s~--~~~~l~s~s~d---- 261 (355)
T 3vu4_A 197 PIKMVRLNRKSDMVATCSQD-----GTIIRVFKTEDGVLVREFRR-GL---DRADVVDMKWST--DGSKLAVVSDK---- 261 (355)
T ss_dssp CEEEEEECTTSSEEEEEETT-----CSEEEEEETTTCCEEEEEEC-TT---CCSCEEEEEECT--TSCEEEEEETT----
T ss_pred ceEEEEECCCCCEEEEEeCC-----CCEEEEEECCCCcEEEEEEc-CC---CCCcEEEEEECC--CCCEEEEEECC----
Confidence 11222222 56677777654 34 78889887653322110 00 112233344432 34567777765
Q ss_pred CeEEEEECCCCc
Q 007111 279 NQVEVLSIEKNE 290 (617)
Q Consensus 279 ~dV~vyd~~~~~ 290 (617)
..|.+||+....
T Consensus 262 ~~v~iw~~~~~~ 273 (355)
T 3vu4_A 262 WTLHVFEIFNDQ 273 (355)
T ss_dssp CEEEEEESSCCS
T ss_pred CEEEEEEccCCC
Confidence 368899987653
No 431
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=34.97 E-value=3.4e+02 Score=26.71 Aligned_cols=29 Identities=10% Similarity=-0.014 Sum_probs=15.3
Q ss_pred EEEEEeecCCCCCccCeEEEEECC-CCcEEE
Q 007111 109 VLILFGGEDGKRRKLNDLHMFDLK-SLTWLP 138 (617)
Q Consensus 109 ~IYv~GG~~~~~~~~~~v~~yD~~-t~~W~~ 138 (617)
.||+. ....+......+.+|++. +.+...
T Consensus 268 ~l~v~-~~~~~~~~~~~i~v~~~~~~g~~~~ 297 (365)
T 1jof_A 268 YMFAS-SRANKFELQGYIAGFKLRDCGSIEK 297 (365)
T ss_dssp EEEEE-EEESSTTSCCEEEEEEECTTSCEEE
T ss_pred EEEEE-CCCCCCCCCCeEEEEEECCCCCEEE
Confidence 56654 332221123478888875 566554
No 432
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=34.64 E-value=2.1e+02 Score=25.53 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=0.0
Q ss_pred CCCcchhhhHHHHHHHHHHHHH
Q 007111 550 SDNVRLEHDVAFLKAVLDDTQK 571 (617)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~ 571 (617)
+....|.+|+.-..+....+.+
T Consensus 115 ASRqgLrRDLeASReAKKqlEa 136 (146)
T 2xnx_M 115 ASRQSLRRDLDASREAKKQVEK 136 (146)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555665544444333333
No 433
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=34.49 E-value=67 Score=25.52 Aligned_cols=50 Identities=22% Similarity=0.312 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHH
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLAD 519 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (617)
|+.++|-|-=+-++. |-.+++..+-.++...-.+.++.++++.++.|+.+
T Consensus 20 eLl~TKNaLnvvk~D-LI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~e 69 (77)
T 2w83_C 20 QLLETKNALNIVKND-LIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRE 69 (77)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666555444443 33566666666666665555555555555544443
No 434
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=34.42 E-value=27 Score=27.23 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhHHh
Q 007111 514 EKKLADSLKEMELLKEKLAGLELAQEE 540 (617)
Q Consensus 514 ~~~~~~~~~~~~~lkek~~~~e~~qe~ 540 (617)
|...|...+...+||+.|--+|+.||-
T Consensus 42 EatnarL~eq~~lLK~EIRRlERnqeR 68 (71)
T 3bbp_D 42 EATNAILMEQIKLLKSEIRRLERNQER 68 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhHhh
Confidence 344445566677899999999999874
No 435
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=34.26 E-value=97 Score=21.31 Aligned_cols=8 Identities=75% Similarity=0.912 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 007111 511 QEMEKKLA 518 (617)
Q Consensus 511 ~~~~~~~~ 518 (617)
|-+|+|||
T Consensus 30 qalekkla 37 (48)
T 1g6u_A 30 QALEKKLA 37 (48)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444444
No 436
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=34.23 E-value=2e+02 Score=23.87 Aligned_cols=72 Identities=14% Similarity=0.125 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhh----------hh--hhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNF----------SS--VLKSRQEMEKKLADSLKEMELLKEKLAGLEL 536 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~----------~~--~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~ 536 (617)
+.+..++..|-.....++.++..........++.- .. .-....+.+.++.++..+++.|++++..++.
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~ 92 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELER 92 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677776666677777776666666665511 10 0122345556666666667777777766665
Q ss_pred hHHh
Q 007111 537 AQEE 540 (617)
Q Consensus 537 ~qe~ 540 (617)
..++
T Consensus 93 ~~~~ 96 (112)
T 1l8d_A 93 ELRR 96 (112)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 437
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=34.01 E-value=1.4e+02 Score=33.89 Aligned_cols=93 Identities=12% Similarity=0.191 Sum_probs=51.4
Q ss_pred HHHHHHHHHhchhhHhHHHHhh----------cHHHHhhhhhhh---hhhHHHHHHH---------HHHHHHHHHHHHHH
Q 007111 473 SKMAALIRKNGILEGQLAAALV----------NREAAEKNFSSV---LKSRQEMEKK---------LADSLKEMELLKEK 530 (617)
Q Consensus 473 ~~~~~~~~~~~~~~~q~~~~~~----------~~~~~~~~~~~~---~~~~~~~~~~---------~~~~~~~~~~lkek 530 (617)
.+|.++-++...|-.||.++.. ..|.|-+++.+. +..-++|.+| |....++.+.+...
T Consensus 17 ~~i~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~l~~~yg~l~il~~l~~~~~~~~~~~~~ 96 (706)
T 3fhn_A 17 DRIKQVQNERNELASKLQNLKQSLASNDTEVALSEVIAQDIIEVGASVEGLEQLRAKYGDLQILNKLEKVAVQQTQMQAG 96 (706)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHSCSSHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccccHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 4455554444445455544443 122233333232 4445555543 44455666666666
Q ss_pred HhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHH
Q 007111 531 LAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQ 570 (617)
Q Consensus 531 ~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (617)
+..++.-+++.|+||.---. ++.+|+ ||+++++..
T Consensus 97 ~~~l~~~~~~~~~~~~~~~~-~~~~~~----l~~~~~~~~ 131 (706)
T 3fhn_A 97 VDKLDSFERQLDELAEQPPD-QFTLDD----VKALHSKLT 131 (706)
T ss_dssp HHHHHHHHHHHHHHTTSCGG-GCCHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccc-cccHHH----HHHHHHHHH
Confidence 66677777888888765433 555555 777777765
No 438
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=33.99 E-value=3.8e+02 Score=29.18 Aligned_cols=108 Identities=9% Similarity=-0.099 Sum_probs=53.4
Q ss_pred ceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeec--CCCCCccCeEEEEECCCC--cEEEeecCCCCCC
Q 007111 72 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGE--DGKRRKLNDLHMFDLKSL--TWLPLHCTGTGPS 147 (617)
Q Consensus 72 ~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~--~~~~~~~~~v~~yD~~t~--~W~~l~~~g~~P~ 147 (617)
...+|.+|+.+.....+.. ....... .....++.||+.+.. ... ....+|..+..+. ....+. ..++.
T Consensus 336 ~~~l~~~~~~~~~~~~lt~---~~~~v~~-~~~~d~~~i~~~~~~~~~~~--~~~~l~~~~~~~g~~~~~~l~--~~~~~ 407 (719)
T 1z68_A 336 YKHIHYIKDTVENAIQITS---GKWEAIN-IFRVTQDSLFYSSNEFEEYP--GRRNIYRISIGSYPPSKKCVT--CHLRK 407 (719)
T ss_dssp CEEEEEESSCSTTCEECSC---SSSCEEE-EEEECSSEEEEEESCGGGCT--TCBEEEEEECSSSSCCEEESS--TTTTT
T ss_pred ceEEEEEECCCCceEeccc---CceEEEE-EEEEeCCEEEEEEecCCCCC--ceEEEEEEeCCCCCCCceecc--CccCC
Confidence 4579999998887665541 1111112 222244566666543 222 2356788887555 345553 12221
Q ss_pred CCcccEEEEE--CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEe
Q 007111 148 PRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRI 190 (617)
Q Consensus 148 ~R~~h~a~~~--~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~ 190 (617)
...+...+.+ +++.+++.+ .+... ..+++||+.+++...+
T Consensus 408 ~~~~~~~~~~s~dg~~l~~~~-s~~~~--p~~~l~d~~~g~~~~~ 449 (719)
T 1z68_A 408 ERCQYYTASFSDYAKYYALVC-YGPGI--PISTLHDGRTDQEIKI 449 (719)
T ss_dssp TTBCBEEEEECGGGSSEEEEE-CCBSS--CEEEEECSSSCCEEEE
T ss_pred CCCceEEEEECCCCCEEEEEc-CCCCC--CeEEEEECCCCCEEEE
Confidence 2233333333 344344332 22221 2588999887765433
No 439
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=33.92 E-value=1.6e+02 Score=25.12 Aligned_cols=27 Identities=41% Similarity=0.374 Sum_probs=21.3
Q ss_pred HHHHHHHhchhhHhHHHHhhcHHHHhh
Q 007111 475 MAALIRKNGILEGQLAAALVNREAAEK 501 (617)
Q Consensus 475 ~~~~~~~~~~~~~q~~~~~~~~~~~~~ 501 (617)
+..|..+....|+||..|..-+..|++
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~ 50 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEK 50 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667789999999998888887
No 440
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=33.48 E-value=1.5e+02 Score=22.20 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=11.8
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHH
Q 007111 500 EKNFSSVLKSRQEMEKKLADSLKEM 524 (617)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (617)
|+|-..+.++|+.=.........++
T Consensus 7 erNr~AA~k~R~rKk~~~~~Le~~~ 31 (61)
T 1t2k_D 7 ERNRAAASRSRQKRKVWVQSLEKKA 31 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666654443333333333
No 441
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=33.25 E-value=1.9e+02 Score=31.08 Aligned_cols=35 Identities=23% Similarity=0.151 Sum_probs=24.3
Q ss_pred chHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHH
Q 007111 465 SSIYQFYESKMAALIRKNGILEGQLAAALVNREAA 499 (617)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~ 499 (617)
.+..+.||.+++..-.+|++++++.+++-+.-++|
T Consensus 26 a~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~a 60 (497)
T 3iox_A 26 ADAKAAYEAAVAANNAANAALTAENTAIKKRNADA 60 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 56778899998888887777766666655444443
No 442
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=33.04 E-value=1.9e+02 Score=23.71 Aligned_cols=41 Identities=12% Similarity=0.238 Sum_probs=28.8
Q ss_pred hcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007111 494 VNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 534 (617)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~ 534 (617)
..++..|+.....-..++.|...++.+.+|+..+|.|+..+
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666677777778888888888888887654
No 443
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=32.89 E-value=2e+02 Score=23.89 Aligned_cols=85 Identities=15% Similarity=0.232 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccc---c-ccCCCc-----------chhhhHHHHHHHHHHHHHh
Q 007111 508 KSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSN---I-VHSDNV-----------RLEHDVAFLKAVLDDTQKE 572 (617)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~---~-~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 572 (617)
...+.+..++..+...+..|+..+..++++.+|...|.. + ..-..+ .|+..+.+++..++++++.
T Consensus 13 ~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~ 92 (117)
T 2zqm_A 13 GQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQ 92 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555556666666666665541 0 011122 3444555555566666555
Q ss_pred hhhhccchhhhccccccchhhHHHHHHHHhhhhc
Q 007111 573 LHSTRGVLAGERARAFQLQVEVFHLKQRLQSLEN 606 (617)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (617)
++. ++-++..|+..|+.+=.
T Consensus 93 ~~~--------------l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 93 EKK--------------LNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHH--------------HHHHHHHHHHHHHHHHS
T ss_pred HHH--------------HHHHHHHHHHHHHHHHc
Confidence 554 34567777777776653
No 444
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=32.69 E-value=59 Score=25.47 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=17.3
Q ss_pred hhhhHHHHHHHHHHHHHhhhh
Q 007111 555 LEHDVAFLKAVLDDTQKELHS 575 (617)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~ 575 (617)
|..|+.+|++-++.++.||-.
T Consensus 48 l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 48 TTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 568889999999999888753
No 445
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=32.52 E-value=4.2e+02 Score=27.04 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=12.4
Q ss_pred cccEEEEECCcEEEEEcc
Q 007111 150 SNHVAALYDDKNLLIFGG 167 (617)
Q Consensus 150 ~~h~a~~~~~~~LyV~GG 167 (617)
..|++++..+..+|.+|-
T Consensus 182 ~~hs~alt~~G~v~~wG~ 199 (406)
T 4d9s_A 182 AEHTAAVTEDGDLYGWGW 199 (406)
T ss_dssp SSEEEEEETTSCEEEEEC
T ss_pred CCeEEEEeCCCCEEEeeC
Confidence 356777765555999984
No 446
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=32.35 E-value=3.9e+02 Score=26.60 Aligned_cols=146 Identities=3% Similarity=-0.072 Sum_probs=80.0
Q ss_pred ECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECC
Q 007111 55 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLK 132 (617)
Q Consensus 55 ~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~ 132 (617)
.++.||+.-.. ...++++++....-..+.. ..+.. ...+++. ++.||+..-.. ...++++++.
T Consensus 126 ~~g~ly~~d~~------~~~I~~~~~dG~~~~~l~~-~~l~~---P~~iavdp~~g~ly~td~~~-----~~~I~r~~~d 190 (349)
T 3v64_C 126 VHDKLYWTDSG------TSRIEVANLDGAHRKVLLW-QSLEK---PRAIALHPMEGTIYWTDWGN-----TPRIEASSMD 190 (349)
T ss_dssp TTTEEEEEETT------TTEEEEEETTSCSCEEEEC-TTCSC---EEEEEEETTTTEEEEEECSS-----SCEEEEEETT
T ss_pred CCCeEEEEcCC------CCeEEEEcCCCCceEEEEe-CCCCC---cceEEEecCcCeEEEeccCC-----CCEEEEEeCC
Confidence 37899988532 2378999987665333321 11222 2344454 57888874211 3679999988
Q ss_pred CCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCE
Q 007111 133 SLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTK 211 (617)
Q Consensus 133 t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~ 211 (617)
...-+.+-. ..+.. -.+.++- .+..||+.-.. .+.|+++|+....-..+...+ .+ .-+++++.++.
T Consensus 191 G~~~~~~~~-~~~~~---PnGla~d~~~~~lY~aD~~-----~~~I~~~~~dG~~~~~~~~~~-~~---~P~giav~~~~ 257 (349)
T 3v64_C 191 GSGRRIIAD-THLFW---PNGLTIDYAGRRMYWVDAK-----HHVIERANLDGSHRKAVISQG-LP---HPFAITVFEDS 257 (349)
T ss_dssp SCSCEESCC-SSCSC---EEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEECSS-CS---SEEEEEEETTE
T ss_pred CCCcEEEEE-CCCCC---cceEEEeCCCCEEEEEECC-----CCEEEEEeCCCCceEEEEeCC-CC---CceEEEEECCE
Confidence 655444311 11111 1233443 35558887432 256999998754333332221 11 22455557899
Q ss_pred EEEEecCCCCCccceEEEEECC
Q 007111 212 WYIAGGGSRKKRHAETLIFDIL 233 (617)
Q Consensus 212 IyI~GG~s~~~~~~~v~~yDl~ 233 (617)
+|+..-.+ ..++++|..
T Consensus 258 ly~td~~~-----~~V~~~~~~ 274 (349)
T 3v64_C 258 LYWTDWHT-----KSINSANKF 274 (349)
T ss_dssp EEEEETTT-----TEEEEEETT
T ss_pred EEEecCCC-----CeEEEEEcc
Confidence 99985433 457788743
No 447
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=32.12 E-value=1.9e+02 Score=23.89 Aligned_cols=70 Identities=17% Similarity=0.260 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHH-HhhhhhhhhhhHH----HHHHHHHHHHHHHHHHHHHHhhhHH
Q 007111 466 SIYQFYESKMAALIRKNGILEGQLAAALVNREA-AEKNFSSVLKSRQ----EMEKKLADSLKEMELLKEKLAGLEL 536 (617)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~lkek~~~~e~ 536 (617)
++...||..++.+-..-+.||..|... ..... ...+|+.+++... .|=.+++.+-.+++.+||.-..+-+
T Consensus 12 ~lv~~fe~rL~~Yr~~IeelE~~L~s~-s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~rr 86 (93)
T 3t98_B 12 VLVQQFEVQLQQYRQQIEELENHLATQ-ANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYRK 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCH-HHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777777776666552 11111 1245555555443 4668888888999999988665543
No 448
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=31.84 E-value=65 Score=34.60 Aligned_cols=54 Identities=20% Similarity=0.219 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHH
Q 007111 466 SIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLAD 519 (617)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (617)
.+.|..-.+++-.-.+--.++.++++|-.++.-|...||.|+++|-+-|.|-.+
T Consensus 388 ~~w~~~~~~~~~~~~dv~~~~a~~d~~~~~~s~~~~~ls~~me~Rkq~e~k~k~ 441 (551)
T 2b5u_A 388 RMWQMAGLKAQRAQTDVNNKQAAFDAAAKEKSDADAALSSAMESRKKKEDKKRS 441 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccchhhhhhhhhhhHHHHHHHHhhcccchhhhhhhhhhcccchhhhhhh
Confidence 455544456655555566678899999888988999999999999655554444
No 449
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=31.65 E-value=2.3e+02 Score=25.30 Aligned_cols=8 Identities=50% Similarity=0.601 Sum_probs=3.2
Q ss_pred HHHHHhhh
Q 007111 527 LKEKLAGL 534 (617)
Q Consensus 527 lkek~~~~ 534 (617)
|+++..++
T Consensus 98 L~e~~e~~ 105 (155)
T 2oto_A 98 LEEKKEAL 105 (155)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444433
No 450
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=31.31 E-value=4.6e+02 Score=28.17 Aligned_cols=90 Identities=20% Similarity=0.175 Sum_probs=46.5
Q ss_pred chhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHhhhHHhHHhhhcccccccCC----------
Q 007111 483 GILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLK-EMELLKEKLAGLELAQEEANSLSNIVHSD---------- 551 (617)
Q Consensus 483 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lkek~~~~e~~qe~~~~~~~~~~~~---------- 551 (617)
+.+|.+++.|.+.+++|||+.+..- +||---.++=+..| ++...--+|+.++.+-..-++-.==+|+-
T Consensus 317 ~~Aer~~e~a~ael~~a~k~~a~~~-er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f~~~n~~p~~~Gh~~w~~~~~ 395 (551)
T 2b5u_A 317 EAAERNYERARAELNQANEDVARNQ-ERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGL 395 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCTTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhhhhhccChhhccchhhhhccc
Confidence 7788899999999999999865432 23221111111111 22223334444433222211110001111
Q ss_pred -CcchhhhHHHHHHHHHHHHHhh
Q 007111 552 -NVRLEHDVAFLKAVLDDTQKEL 573 (617)
Q Consensus 552 -~~~~~~~~~~~~~~~~~~~~~~ 573 (617)
=-|...||.-++|.++..-||+
T Consensus 396 ~~~~~~~dv~~~~a~~d~~~~~~ 418 (551)
T 2b5u_A 396 KAQRAQTDVNNKQAAFDAAAKEK 418 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHhhcc
Confidence 1234557778888888888887
No 451
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=31.24 E-value=67 Score=34.46 Aligned_cols=40 Identities=25% Similarity=0.305 Sum_probs=27.8
Q ss_pred hHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 007111 486 EGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEME 525 (617)
Q Consensus 486 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (617)
|.++..-+..+|..+|+-...++--.++.+|..+.++++-
T Consensus 92 E~~~~~Kl~eLE~e~k~d~~~~khn~~I~~k~g~~l~~v~ 131 (526)
T 3iyk_A 92 ERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVY 131 (526)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777766667777777777776555543
No 452
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=31.20 E-value=1.1e+02 Score=22.98 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=15.8
Q ss_pred hhhhhhhhhHHH-------HHHHHHHHHHHHHHHHHHHhhh
Q 007111 501 KNFSSVLKSRQE-------MEKKLADSLKEMELLKEKLAGL 534 (617)
Q Consensus 501 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~lkek~~~~ 534 (617)
+|-..+-++|+. ||.++.....+-+.|+.++..+
T Consensus 8 rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L 48 (62)
T 1jnm_A 8 RNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANML 48 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555553 4444444444444444444433
No 453
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=30.52 E-value=1.4e+02 Score=26.94 Aligned_cols=29 Identities=31% Similarity=0.389 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHhhhc
Q 007111 515 KKLADSLKEMELLKEKLAGLELAQEEANS 543 (617)
Q Consensus 515 ~~~~~~~~~~~~lkek~~~~e~~qe~~~~ 543 (617)
..++.+.+..+.-|+|++.+...+-|-++
T Consensus 114 ~~l~e~e~~leeyK~Kl~rv~~vkkeL~~ 142 (152)
T 4fla_A 114 DVLSEKEKKLEEYKQKLARVTQVRKELKS 142 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666777666666655544
No 454
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=30.33 E-value=1e+02 Score=26.95 Aligned_cols=28 Identities=14% Similarity=0.270 Sum_probs=17.5
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhccchh
Q 007111 554 RLEHDVAFLKAVLDDTQKELHSTRGVLA 581 (617)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (617)
|.+.+++-+.+.+.+...||..+|.-++
T Consensus 74 ~~~~~l~~~q~~i~~lE~eL~~~r~em~ 101 (131)
T 3tnu_A 74 RYCMQLAQIQEMIGSVEEQLAQLRCEME 101 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666665543
No 455
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=30.22 E-value=55 Score=27.30 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhhhHHhHHhhhcccc
Q 007111 520 SLKEMELLKEKLAGLELAQEEANSLSN 546 (617)
Q Consensus 520 ~~~~~~~lkek~~~~e~~qe~~~~~~~ 546 (617)
...|+..|..+++.+|.+|.++.-|.|
T Consensus 52 L~~EI~~L~~eI~~LE~iqs~aK~LRn 78 (96)
T 1t3j_A 52 LEEEIARLSKEIDQLEKMQNNSKLLRN 78 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 334445566777777888888776643
No 456
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=30.06 E-value=1.6e+02 Score=24.06 Aligned_cols=14 Identities=14% Similarity=0.472 Sum_probs=6.7
Q ss_pred hhhhHHHHHHHHHH
Q 007111 555 LEHDVAFLKAVLDD 568 (617)
Q Consensus 555 ~~~~~~~~~~~~~~ 568 (617)
|+.|+.+|+.+|-+
T Consensus 62 L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 62 LSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555443
No 457
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=29.94 E-value=1.7e+02 Score=24.40 Aligned_cols=60 Identities=17% Similarity=0.308 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhH---HhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhh
Q 007111 510 RQEMEKKLADSLKEMELLKEKLAGLELAQ---EEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELH 574 (617)
Q Consensus 510 ~~~~~~~~~~~~~~~~~lkek~~~~e~~q---e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (617)
+..+..||.++.+|++....--.|++.-+ ++-.+++ |.-.+|..++....-++-++.|||
T Consensus 17 kkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~G-----D~~s~~~~L~e~~~kid~L~~el~ 79 (98)
T 2ke4_A 17 RKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMG-----DPASLEPQIAETLSNIERLKLEVQ 79 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGC-----CGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC-----CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777766555555555443 3333333 333446666666666666555544
No 458
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=29.42 E-value=2.2e+02 Score=22.76 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=39.2
Q ss_pred hhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhh
Q 007111 485 LEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEA 541 (617)
Q Consensus 485 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~ 541 (617)
|...+..+.+.++..-+--....+..|+++..+....+|...|..-+.-+...-+|.
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666655555667777777888887778777877777776665554
No 459
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=29.32 E-value=1.9e+02 Score=30.02 Aligned_cols=15 Identities=13% Similarity=0.142 Sum_probs=6.6
Q ss_pred hhHHHHHHHHHHHHH
Q 007111 557 HDVAFLKAVLDDTQK 571 (617)
Q Consensus 557 ~~~~~~~~~~~~~~~ 571 (617)
.|++-|+.-+++.+.
T Consensus 101 ~e~~~l~~~l~~le~ 115 (365)
T 1gqe_A 101 AELDALEEKLAQLEF 115 (365)
T ss_dssp HHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 460
>3fga_D Shugoshin-like 1; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens}
Probab=29.21 E-value=64 Score=23.01 Aligned_cols=27 Identities=37% Similarity=0.404 Sum_probs=19.8
Q ss_pred hhhhhhHHHHHHHHHHHHH-HHHHHHHH
Q 007111 504 SSVLKSRQEMEKKLADSLK-EMELLKEK 530 (617)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~-~~~~lkek 530 (617)
|.+|||.|.=.+-||.+++ |.+.+||.
T Consensus 2 st~LK~~Q~NNr~LalALe~Ek~Kvr~A 29 (47)
T 3fga_D 2 STLLKNYQDNNKMLVLALENEKSKVKEA 29 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4568999999999998776 55555554
No 461
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=28.86 E-value=2.7e+02 Score=23.77 Aligned_cols=45 Identities=20% Similarity=0.246 Sum_probs=24.5
Q ss_pred HHhhcHHHHhhhhhhhhhhHHHHHH----HHHHHHHHHHHHHHHHhhhH
Q 007111 491 AALVNREAAEKNFSSVLKSRQEMEK----KLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~lkek~~~~e 535 (617)
...+.+.++.+.|+..-+.|.+||. |-++.-+++..|.+++...|
T Consensus 10 ~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE 58 (112)
T 1x79_B 10 KLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASE 58 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444455555555555544 34455566677777777765
No 462
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=28.60 E-value=2.7e+02 Score=23.69 Aligned_cols=64 Identities=22% Similarity=0.132 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhH
Q 007111 472 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ 538 (617)
Q Consensus 472 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~q 538 (617)
+++..+|..+++.|...++.--.-.+++.+.-. .....|++.+.....+.+.|+.+|-.+|.+-
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~---~~~~~Lq~El~~lr~~~~~l~~~iReLEq~N 65 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSY---KQVSVLEDDLSQTRAIKEQLHKYVRELEQAN 65 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567788888888888888777666666554433 3345577777777777788888888887663
No 463
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=28.52 E-value=1.9e+02 Score=23.94 Aligned_cols=63 Identities=8% Similarity=0.232 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007111 468 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 534 (617)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~ 534 (617)
-++.+.++..+-..+..+..+--++++.+.-|..- ++.+++.+..+....+.++.|.++|..+
T Consensus 32 A~~vd~~~~~i~~~~~~~~~~r~~vmaALnladel----~~~~~~~~~~~~~~~~~i~~L~~~le~a 94 (104)
T 1t3u_A 32 ARYLDGKMREIRSSGKVIGADRVAVMAALNITHDL----LHRKERLDQESSSTRERVRELLDRVDRA 94 (104)
T ss_dssp HHHHHHHHHHHHTTTCSCSHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999888888888888777654 4444444444555555556666665544
No 464
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=28.27 E-value=85 Score=25.48 Aligned_cols=58 Identities=16% Similarity=0.103 Sum_probs=31.9
Q ss_pred HHhchhhHhHHHHhhcHHHHhhhhhhh--h-hhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhh
Q 007111 480 RKNGILEGQLAAALVNREAAEKNFSSV--L-KSRQEMEKKLADSLKEMELLKEKLAGLELAQEEA 541 (617)
Q Consensus 480 ~~~~~~~~q~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~ 541 (617)
|+.+.|+.+++..-+.+.+.+..++.. + .+. .+++.+.++++.++..|..++.-=||.
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~----~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVADASFFSQPH----EQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666542 2 232 345556666666666666655444443
No 465
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=27.82 E-value=3.1e+02 Score=30.30 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=16.8
Q ss_pred hHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHH
Q 007111 486 EGQLAAALVNREAAEKNFSSVLKSRQEMEKKLAD 519 (617)
Q Consensus 486 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (617)
|.+++...+-+|+||+.....-+-..++|..+.+
T Consensus 486 ~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~ 519 (592)
T 1f5n_A 486 EKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQ 519 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355556666666666544433333334443333
No 466
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=27.81 E-value=1.9e+02 Score=32.28 Aligned_cols=157 Identities=13% Similarity=0.138 Sum_probs=71.9
Q ss_pred EEEEECCEEEEEeecCCCCCccCeEEEEECCCC-cEEEeecC---CCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCe
Q 007111 102 TVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL-TWLPLHCT---GTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLND 176 (617)
Q Consensus 102 s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~-~W~~l~~~---g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~ 176 (617)
+++...+.+|+|=| +.+|+++.... ........ ..+|. ....+.... +++ +|+|=|. .
T Consensus 448 Ait~~rg~~yfFKg--------~~yWr~~~~~~~~~~P~~Is~~wp~LP~-~IDAA~~~~~~~k-~yFFkG~-------~ 510 (631)
T 1ck7_A 448 GIAQIRGEIFFFKD--------RFIWRTVTPRDKPMGPLLVATFWPELPE-KIDAVYEAPQEEK-AVFFAGN-------E 510 (631)
T ss_dssp EEEECSSSEEEECS--------SEEEEESCTTSCCEEEEEGGGTCTTSCS-SCSBCCEETTTTE-EEEEETT-------E
T ss_pred eeEecCCcEEEEcC--------CEEEEEcCCCCCCCCceeccccCCCCCc-cceEEEEECCCCE-EEEEecC-------E
Confidence 34556788898844 34666665432 22221111 12332 222222222 344 8888663 4
Q ss_pred EEEEECCCC--cEE-EeecCCCCCCC-CcceEEEE--ECCEEEEEecCCCCCccceEEEEECCCCcEEEe-e-cCCCCCC
Q 007111 177 LYSLDFETM--IWT-RIKIRGFHPSP-RAGCCGVL--CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA-I-TSPSSSV 248 (617)
Q Consensus 177 v~~yD~~t~--~W~-~~~~~g~~P~~-R~~ha~v~--~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l-~-~~~~~~p 248 (617)
.|+|+..+. -+- .+...+.+..+ +.. ++.. .++++|+|-| +..|+||.....-..- + .+....+
T Consensus 511 yWry~~~~l~~GYPk~Is~~G~P~~~~~ID-AAf~~~~~gktYFFkG-------~~ywryd~~~~~vd~gYPk~i~~~w~ 582 (631)
T 1ck7_A 511 YWIYSASTLERGYPKPLTSLGLPPDVQRVD-AAFNWSKNKKTYIFAG-------DKFWRYNEVKKKMDPGFPKLIADAWN 582 (631)
T ss_dssp EEEEETTEECTTCCEEGGGGTCCTTCCCCC-BCCCCTTTCEEEEEET-------TEEEEEETTTTEECTTCCEETTTSCS
T ss_pred EEEECCCccccCCCccchhcCCCCCCCcce-eEEEecCCCeEEEEEC-------CEEEEEcCCcccccCCCCcchHhhcC
Confidence 888885210 011 11111211111 122 2222 3689999987 4689999866431110 0 0000000
Q ss_pred CCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 249 TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 249 ~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.-....-+ ++...+.+.+|+|-|. ..|.||..+..
T Consensus 583 G~p~~iDA-Af~~~~~g~~YFFkG~------~Ywr~d~~~~~ 617 (631)
T 1ck7_A 583 AIPDNLDA-VVDLQGGGHSYFFKGA------YYLKLENQSLK 617 (631)
T ss_dssp SCCTTCCE-EECCTTSCBCEEEETT------EEECCBTTBTT
T ss_pred CCCCCCcE-eEEEcCCCeEEEEECC------EEEEEeCccce
Confidence 00111222 2333334678888775 56777775443
No 467
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=27.77 E-value=2.9e+02 Score=28.66 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=27.8
Q ss_pred HHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhhccCCCCC
Q 007111 565 VLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLENRAPTPR 612 (617)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (617)
.|.|...+|+..|+.=| +||..+..|++.|+.+-..-|.|-
T Consensus 360 ~~~e~~~~~~~~~~~~~-------~~~~q~~~~~~~~~~~~~~~~p~~ 400 (406)
T 4dyl_A 360 VLQEALQGLQVALCSQA-------KLQAQQELLQTKLEHLGPGEPPPV 400 (406)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTTTTSCCCCC
T ss_pred hHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHhcCCCCCCCc
Confidence 34455555555554332 477788899999999988777653
No 468
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=27.41 E-value=1.3e+02 Score=26.51 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=26.5
Q ss_pred hHHHHhhcH----HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007111 488 QLAAALVNR----EAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 534 (617)
Q Consensus 488 q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~ 534 (617)
-|-++|.+. |+-.+++...-+--+++++.+....+|.|.|-++|.++
T Consensus 75 ~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 125 (132)
T 1ykh_B 75 KLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSM 125 (132)
T ss_dssp HHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455443 44444555555555566666666666666666666554
No 469
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A*
Probab=27.39 E-value=1.1e+02 Score=33.80 Aligned_cols=133 Identities=15% Similarity=0.131 Sum_probs=72.1
Q ss_pred cccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCC--CCCCCCcceEEEEE--C---CEEEEEecCCCCC
Q 007111 150 SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRG--FHPSPRAGCCGVLC--G---TKWYIAGGGSRKK 222 (617)
Q Consensus 150 ~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g--~~P~~R~~ha~v~~--~---~~IyI~GG~s~~~ 222 (617)
.|+++...++ .+|+|.-........++.|+.....|....... .......+++++.- + ..-+|+|.-. ..
T Consensus 167 ~G~Sa~~~~d--~~v~GApG~~~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sy~GySva~gD~ngDG~~DlvvGAP~-~~ 243 (597)
T 3v4v_A 167 AGISSFYTKD--LIVMGAPGSSYWTGSLFVYNITTNKYKAFLDKQNQVKFGSYLGYSVGAGHFRSQHTTEVVGGAPQ-HE 243 (597)
T ss_dssp BTSSEEECSS--EEEEEETTHHHHTBEEEEEETTTTBCCBBCCTTCCSCTTCCBTSSEEEECSSCTTSCEEEEEETT-GG
T ss_pred CceeeEecCC--ceEEccccccccccceEEEEccCceeeecccccccccccCcCccEEEEEEECCCCCeEEEEeccc-cc
Confidence 3455555444 467776443233456889999988887542210 01123445555542 2 2346666422 12
Q ss_pred ccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCC--cEEEEEcCCCC---CCCCeEEEEEC
Q 007111 223 RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEK--DFLVAFGGIKK---EPSNQVEVLSI 286 (617)
Q Consensus 223 ~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~--~~L~I~GG~~~---~~~~dV~vyd~ 286 (617)
....+++|......|.............+.+.+.++.+.+++ .-| ++|.... .....|++|--
T Consensus 244 ~~G~V~v~~~~~~~~~~~~~l~G~~~g~~fG~sva~~D~ngDG~~Dl-vVGap~~~~~~~~G~v~vy~~ 311 (597)
T 3v4v_A 244 QIGKAYIFSIDEKELNILHEMKGKKLGSYFGASVCAVDLNADGFSDL-LVGAPMQSTIREEGRVFVYIN 311 (597)
T ss_dssp GTCEEEEEEECSSSEEEEEEEECSSTTCCTTSEEEEECTTCSSSCEE-EEEETTCCSSSCCCEEEEEEE
T ss_pred CCceEEEEecCCCceeEEEEecccccCCCCcceEEEEeeCCCCCceE-EEEcccccCCCcCCeEEEEEE
Confidence 345788898777789876654444444567777776644332 344 4553211 12456777743
No 470
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=27.38 E-value=1.7e+02 Score=21.56 Aligned_cols=22 Identities=5% Similarity=-0.007 Sum_probs=8.0
Q ss_pred HHHHhhcHHHHhhhhhhhhhhH
Q 007111 489 LAAALVNREAAEKNFSSVLKSR 510 (617)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~ 510 (617)
+..+.+...++.++|+.+..+.
T Consensus 28 ~~~~k~~~~~~~~~l~~~~~~I 49 (60)
T 3htk_A 28 FLKAKEKINEIFEKLNTIRDEV 49 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 471
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=27.32 E-value=1.2e+02 Score=26.28 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=16.8
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhccchh
Q 007111 554 RLEHDVAFLKAVLDDTQKELHSTRGVLA 581 (617)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (617)
|.+.+++-+.+.+.+...||..+|.-++
T Consensus 72 ~~~~~l~~~q~~i~~lE~eL~~~r~e~~ 99 (129)
T 3tnu_B 72 RGELALKDARNKLAELEEALQKAKQDMA 99 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4455566666666666666666665443
No 472
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=27.24 E-value=5.1e+02 Score=26.34 Aligned_cols=151 Identities=10% Similarity=0.074 Sum_probs=81.9
Q ss_pred cCeEEEEECC--CCcEEEeecCCC-CC-CCCcccEEEEEC---Cc-EEEEEccCCCCCCCCeEEEEECCCCcEEEeecCC
Q 007111 123 LNDLHMFDLK--SLTWLPLHCTGT-GP-SPRSNHVAALYD---DK-NLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRG 194 (617)
Q Consensus 123 ~~~v~~yD~~--t~~W~~l~~~g~-~P-~~R~~h~a~~~~---~~-~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g 194 (617)
...+++||+. +.+-.++...+. .. ..-.-|+..++. +. +|||+--.. ....-+++.+|+.+....-+....
T Consensus 82 ~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~-~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 82 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPG-SSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECST-TCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCC-CCCeEEEEEEECCCCEEEEEeccc
Confidence 4569999987 345666654442 21 233455666543 32 577774432 122345777888777766665433
Q ss_pred CCCCCCcceEEEEECCEEEEEecC--CC----------CCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeec
Q 007111 195 FHPSPRAGCCGVLCGTKWYIAGGG--SR----------KKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHK 262 (617)
Q Consensus 195 ~~P~~R~~ha~v~~~~~IyI~GG~--s~----------~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~ 262 (617)
..+..+.+-..+.-++.+|+-+.. +. ......+|+||+. +.+.+.. .....--+++. .
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~-------~l~~pNGia~s-p 230 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAE-------GFDFANGINIS-P 230 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEE-------EESSEEEEEEC-T
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeec-------CCcccCcceEC-C
Confidence 334455555555568898886542 11 1123568899884 3443321 00111122232 2
Q ss_pred CCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 263 EKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 263 ~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
+...+|+.-.. ...|++|++..
T Consensus 231 Dg~~lYvadt~----~~~I~~~~~~~ 252 (355)
T 3sre_A 231 DGKYVYIAELL----AHKIHVYEKHA 252 (355)
T ss_dssp TSSEEEEEEGG----GTEEEEEEECT
T ss_pred CCCEEEEEeCC----CCeEEEEEECC
Confidence 34567775532 35799999864
No 473
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=27.02 E-value=3.3e+02 Score=24.83 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhhhhhcc
Q 007111 559 VAFLKAVLDDTQKELHSTRG 578 (617)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~ 578 (617)
|.-|..-+...++||.....
T Consensus 144 v~~ll~kh~~~~~el~~~~~ 163 (216)
T 1u5p_A 144 VQNLRKKHKRLEAELAAHEP 163 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 33333344455566655443
No 474
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=26.96 E-value=3.9e+02 Score=24.85 Aligned_cols=196 Identities=8% Similarity=-0.061 Sum_probs=105.2
Q ss_pred eEEEEE--CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCe
Q 007111 50 HSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLND 125 (617)
Q Consensus 50 hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~ 125 (617)
++++.. +++||+.-.. ...+++|++.+..-..+.. ......+.++.. ++.||+... ..+.
T Consensus 39 ~gi~~d~~~~~ly~~d~~------~~~I~~~~~~g~~~~~~~~----~~~~~p~~ia~d~~~~~lyv~d~------~~~~ 102 (267)
T 1npe_A 39 IGLAFDCVDKVVYWTDIS------EPSIGRASLHGGEPTTIIR----QDLGSPEGIALDHLGRTIFWTDS------QLDR 102 (267)
T ss_dssp EEEEEETTTTEEEEEETT------TTEEEEEESSSCCCEEEEC----TTCCCEEEEEEETTTTEEEEEET------TTTE
T ss_pred EEEEEecCCCEEEEEECC------CCEEEEEecCCCCcEEEEE----CCCCCccEEEEEecCCeEEEEEC------CCCE
Confidence 455554 5789988532 2479999998765333321 111233455554 578998753 2357
Q ss_pred EEEEECCCCcEEEeecCCCCCCCCcccEEEEEC-CcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceE
Q 007111 126 LHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCC 204 (617)
Q Consensus 126 v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~-~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha 204 (617)
+++|++....-..+... .+..| ..+++.. +..||+..... ..+.|+++++....-..+... .. ..-..
T Consensus 103 I~~~~~~g~~~~~~~~~-~~~~P---~~i~vd~~~g~lyv~~~~~---~~~~I~~~~~dg~~~~~~~~~---~~-~~P~g 171 (267)
T 1npe_A 103 IEVAKMDGTQRRVLFDT-GLVNP---RGIVTDPVRGNLYWTDWNR---DNPKIETSHMDGTNRRILAQD---NL-GLPNG 171 (267)
T ss_dssp EEEEETTSCSCEEEECS-SCSSE---EEEEEETTTTEEEEEECCS---SSCEEEEEETTSCCCEEEECT---TC-SCEEE
T ss_pred EEEEEcCCCCEEEEEEC-CCCCc---cEEEEeeCCCEEEEEECCC---CCcEEEEEecCCCCcEEEEEC---CC-CCCcE
Confidence 99999876543333211 11111 2334432 45588875321 135689999865443333221 11 11223
Q ss_pred EEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEE
Q 007111 205 GVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVE 282 (617)
Q Consensus 205 ~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~ 282 (617)
++.. ++.+|+.-... +.+++||+....-..+.. ... .-++++ +. .+.||+.-.. .+.|+
T Consensus 172 ia~d~~~~~lyv~d~~~-----~~I~~~~~~g~~~~~~~~-~~~-----~P~gi~-~d---~~~lyva~~~----~~~v~ 232 (267)
T 1npe_A 172 LTFDAFSSQLCWVDAGT-----HRAECLNPAQPGRRKVLE-GLQ-----YPFAVT-SY---GKNLYYTDWK----TNSVI 232 (267)
T ss_dssp EEEETTTTEEEEEETTT-----TEEEEEETTEEEEEEEEE-CCC-----SEEEEE-EE---TTEEEEEETT----TTEEE
T ss_pred EEEcCCCCEEEEEECCC-----CEEEEEecCCCceEEEec-CCC-----CceEEE-Ee---CCEEEEEECC----CCeEE
Confidence 3433 57899986433 468999987643333221 111 112333 22 3678876533 24799
Q ss_pred EEECCCCcc
Q 007111 283 VLSIEKNES 291 (617)
Q Consensus 283 vyd~~~~~W 291 (617)
++|+.+.+.
T Consensus 233 ~~d~~~g~~ 241 (267)
T 1npe_A 233 AMDLAISKE 241 (267)
T ss_dssp EEETTTTEE
T ss_pred EEeCCCCCc
Confidence 999987653
No 475
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=26.68 E-value=91 Score=32.40 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=9.5
Q ss_pred HHHHHHHHhchhhHhHHHH
Q 007111 474 KMAALIRKNGILEGQLAAA 492 (617)
Q Consensus 474 ~~~~~~~~~~~~~~q~~~~ 492 (617)
++..+..+.+.|+.++.+-
T Consensus 18 ~l~~~~~r~~el~~~l~~p 36 (371)
T 1zbt_A 18 QLQAVEDRYEELGELLSDP 36 (371)
T ss_dssp HHHHHHHHHHHC-------
T ss_pred hHHHHHHHHHHHHHHhcCC
Confidence 5667888888888887663
No 476
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.61 E-value=1.2e+02 Score=21.33 Aligned_cols=22 Identities=9% Similarity=0.342 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhH
Q 007111 514 EKKLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 514 ~~~~~~~~~~~~~lkek~~~~e 535 (617)
=.|+..+.+|++.-++|++.+.
T Consensus 8 ~qkI~kVdrEI~Kte~kI~~lq 29 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQISKLK 29 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 477
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=26.49 E-value=6.7e+02 Score=27.51 Aligned_cols=201 Identities=8% Similarity=-0.017 Sum_probs=93.2
Q ss_pred EEEEEECCC---C---cEEEeeccCCC-CCCcceeEE-EEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEeecCC
Q 007111 74 SVWTFDTET---E---CWSVVEAKGDI-PVARSGHTV-VRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTG 143 (617)
Q Consensus 74 ~v~~yd~~t---~---~W~~~~~~g~~-P~~R~~~s~-~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g 143 (617)
.++++|+.+ + .+..+...... ....+-... -.-+++++++--.... ....++++|+.+.+ |.......
T Consensus 229 ~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~--~~~~i~~~d~~tg~~~~~~~~~~~ 306 (740)
T 4a5s_A 229 KFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQ--NYSVMDICDYDESSGRWNCLVARQ 306 (740)
T ss_dssp EEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESST--TEEEEEEEEEETTTTEEEECGGGC
T ss_pred EEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCC--CEEEEEEEECCCCccccceeEEEE
Confidence 688999988 7 66666420000 011111111 1236775554332222 13568999988876 54332110
Q ss_pred ---CCCCCC-----cccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEE-EECCEEEE
Q 007111 144 ---TGPSPR-----SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGV-LCGTKWYI 214 (617)
Q Consensus 144 ---~~P~~R-----~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v-~~~~~IyI 214 (617)
...... ....+..-+++.|+++.....+ ...|+.||..++.-..+... ........ ..++.||.
T Consensus 307 l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G--~~~l~~~~~~~~~~~~lT~g-----~~~v~~~~~~d~~~i~f 379 (740)
T 4a5s_A 307 HIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEG--YRHICYFQIDKKDCTFITKG-----TWEVIGIEALTSDYLYY 379 (740)
T ss_dssp EEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTS--CEEEEEEETTCSSCEESCCS-----SSCEEEEEEECSSEEEE
T ss_pred eeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCC--ceEEEEEECCCCceEecccC-----CEEEEEEEEEeCCEEEE
Confidence 000000 1122222355545534432221 46799999988776655431 11111112 22677887
Q ss_pred EecCC-CCCccceEEEEECCCCcEE-EeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 215 AGGGS-RKKRHAETLIFDILKGEWS-VAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 215 ~GG~s-~~~~~~~v~~yDl~~~~W~-~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
.+... .......+|..++....-. .+. +.......++..+.+..+++-.++...|.+ ...+++++..+.
T Consensus 380 ~~~~~~~~~~~~~ly~v~~~g~~~~~~lt---~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~---~p~~~l~~~~~~ 450 (740)
T 4a5s_A 380 ISNEYKGMPGGRNLYKIQLIDYTKVTCLS---CELNPERCQYYSVSFSKEAKYYQLRCSGPG---LPLYTLHSSVND 450 (740)
T ss_dssp EESCGGGCTTCBEEEEEETTEEEEEEESS---TTTSTTTBCBEEEEECTTSSEEEEEECSBS---SCEEEEEETTTT
T ss_pred EEecCCCCCceeEEEEEECCCCCcceeec---cccCCCCCceEEEEECCCCCEEEEEeCCCC---CCEEEEEECCCC
Confidence 76540 1122356888887664433 221 111112234444555544443344444432 345666666543
No 478
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=26.47 E-value=3.9e+02 Score=27.70 Aligned_cols=145 Identities=12% Similarity=-0.003 Sum_probs=73.6
Q ss_pred CEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCC-
Q 007111 57 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL- 134 (617)
Q Consensus 57 ~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~- 134 (617)
+.||+.-.. ..++++|+.++....+.. .......+++. ++.||+..-.... ....++.++....
T Consensus 153 g~Lyv~D~~-------~~I~~id~~~g~v~~~~~-----~~~~P~giavd~dG~lyVad~~~~~--~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 153 DDLYWVGQR-------DAFRHVDFVNQYVDIKTT-----NIGQCADVNFTLNGDMVVVDDQSSD--TNTGIYLFTRASGF 218 (433)
T ss_dssp CEEEEECBT-------SCEEEEETTTTEEEEECC-----CCSCEEEEEECTTCCEEEEECCSCT--TSEEEEEECGGGTT
T ss_pred CEEEEEeCC-------CCEEEEECCCCEEEEeec-----CCCCccEEEECCCCCEEEEcCCCCc--ccceEEEEECCCCe
Confidence 789988321 469999999988877752 22223333333 4458887532211 1233555654322
Q ss_pred cEEEeecCCCCCCCCcccEEEEEC-CcEEEEEccCCCCCCCCeEEEEECCCCcE-EEeecCCCCCCCCcceEEEEE--CC
Q 007111 135 TWLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIW-TRIKIRGFHPSPRAGCCGVLC--GT 210 (617)
Q Consensus 135 ~W~~l~~~g~~P~~R~~h~a~~~~-~~~LyV~GG~~~~~~~n~v~~yD~~t~~W-~~~~~~g~~P~~R~~ha~v~~--~~ 210 (617)
.+.... ..+..| ..+++.. +..||+.-.. .+.|++||+.++.. ..+...+.. +. ...++.. ++
T Consensus 219 ~~~~~~--~~~~~P---~giavd~~~G~lyv~d~~-----~~~V~~~d~~~g~~~~~~~~~~~~--~~-~~~ia~dpdG~ 285 (433)
T 4hw6_A 219 TERLSL--CNARGA---KTCAVHPQNGKIYYTRYH-----HAMISSYDPATGTLTEEEVMMDTK--GS-NFHIVWHPTGD 285 (433)
T ss_dssp CCEEEE--EECSSB---CCCEECTTTCCEEECBTT-----CSEEEEECTTTCCEEEEEEECSCC--SS-CEEEEECTTSS
T ss_pred eccccc--cccCCC---CEEEEeCCCCeEEEEECC-----CCEEEEEECCCCeEEEEEeccCCC--CC-cccEEEeCCCC
Confidence 111111 111111 2333332 3337776432 24699999987766 333333221 21 1233333 44
Q ss_pred EEEEEecCCCCCccceEEEEECC
Q 007111 211 KWYIAGGGSRKKRHAETLIFDIL 233 (617)
Q Consensus 211 ~IyI~GG~s~~~~~~~v~~yDl~ 233 (617)
.+|+.--.. ..++++++.
T Consensus 286 ~LYvad~~~-----~~I~~~~~d 303 (433)
T 4hw6_A 286 WAYIIYNGK-----HCIYRVDYN 303 (433)
T ss_dssp EEEEEETTT-----TEEEEEEBC
T ss_pred EEEEEeCCC-----CEEEEEeCC
Confidence 699885322 468887754
No 479
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=26.39 E-value=1.1e+02 Score=30.55 Aligned_cols=86 Identities=16% Similarity=0.244 Sum_probs=63.6
Q ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchh--hhH-HHHHHHHHHHHHhh
Q 007111 497 EAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLE--HDV-AFLKAVLDDTQKEL 573 (617)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~ 573 (617)
|..+..++.+.+.|-+|..++..+..++..|+.+...=-.||+-.+-|+-.. +..+| .+| +++.++|+.- +|+
T Consensus 6 ~~l~~~~~~~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~---g~~~~ds~~v~~~mq~~Le~E-re~ 81 (302)
T 3ibp_A 6 ASLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQC---GEEFTSSQDVTEYLQQLLERE-REA 81 (302)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TCCCSSHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHh---CCcCCCHHHHHHHHHHHHHHH-HHH
Confidence 4455566666778888888888888899999999888888888888887654 23444 466 7888888765 889
Q ss_pred hhhccchhhhccc
Q 007111 574 HSTRGVLAGERAR 586 (617)
Q Consensus 574 ~~~~~~~~~~~~~ 586 (617)
-.+|-.+|.++.+
T Consensus 82 ~~~Rd~~a~~k~~ 94 (302)
T 3ibp_A 82 IVERDEVGARKNA 94 (302)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988654
No 480
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=26.39 E-value=65 Score=33.45 Aligned_cols=92 Identities=14% Similarity=0.183 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhh------------------HHhHHhhhcccccccCCCcchhhhHHHHHHHHHHH
Q 007111 508 KSRQEMEKKLADSLKEMELLKEKLAGL------------------ELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDT 569 (617)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~lkek~~~~------------------e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (617)
+-+.-|.+.=.++.+.+++||+.|+.+ ..-|+.+|+..|++..-+--||+-+.+||-.+++.
T Consensus 53 rLqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q 132 (390)
T 1deq_A 53 RMKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQ 132 (390)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhhccchhhhccccccchhhHHHHHHH
Q 007111 570 QKELHSTRGVLAGERARAFQLQVEVFHLKQR 600 (617)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (617)
=-.|+.-|.+|.--|..-=+|.+-| .++.+
T Consensus 133 ~~~ir~Lq~~l~~q~~kiqRLE~~I-d~c~~ 162 (390)
T 1deq_A 133 VQRINLLQKNVRDQLVDMKRLEVDI-DIKIR 162 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHhc
No 481
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=26.38 E-value=67 Score=24.39 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007111 507 LKSRQEMEKKLADSLKEMELLKEKLAGL 534 (617)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~lkek~~~~ 534 (617)
..-.++|+.++.....+-+.|+..+..+
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L 49 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777777544
No 482
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=26.02 E-value=3.1e+02 Score=23.41 Aligned_cols=45 Identities=24% Similarity=0.289 Sum_probs=18.9
Q ss_pred HhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 007111 492 ALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLEL 536 (617)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~ 536 (617)
.+..+..+|.++..+=|.-..+--...+....++-|+|.|.-+..
T Consensus 60 E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 60 EMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554443333332222223333344445555544443
No 483
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=25.84 E-value=97 Score=19.73 Aligned_cols=11 Identities=55% Similarity=0.694 Sum_probs=4.7
Q ss_pred CcchhhhHHHH
Q 007111 552 NVRLEHDVAFL 562 (617)
Q Consensus 552 ~~~~~~~~~~~ 562 (617)
|..||.|||-|
T Consensus 17 nyqleqevaql 27 (33)
T 1fmh_A 17 NYQLEQEVAQL 27 (33)
T ss_dssp HHHHHHHHHHH
T ss_pred HhHHHHHHHHH
Confidence 33444444433
No 484
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=25.78 E-value=97 Score=19.74 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhH
Q 007111 513 MEKKLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 513 ~~~~~~~~~~~~~~lkek~~~~e 535 (617)
++..+|...||+..||-.+|++.
T Consensus 7 lkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666666666554
No 485
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=25.60 E-value=4.7e+02 Score=25.40 Aligned_cols=184 Identities=13% Similarity=-0.003 Sum_probs=0.0
Q ss_pred ceEEEEECCC----CcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEee
Q 007111 14 DDVQVLNFDR----FSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVE 89 (617)
Q Consensus 14 ~~v~~yd~~t----~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 89 (617)
..++++++.. .....+.. .....-.+.++...++.||+.-.. ...+.++|+....-..+.
T Consensus 52 ~~I~~~~~~g~~~~~~~~~~~~----------~~~~~p~glavd~~~~~ly~~d~~------~~~I~~~~~~g~~~~~~~ 115 (316)
T 1ijq_A 52 RMICSTQLDRAHGVSSYDTVIS----------RDIQAPDGLAVDWIHSNIYWTDSV------LGTVSVADTKGVKRKTLF 115 (316)
T ss_dssp TEEEEEEC--------CEEEEC----------SSCSCCCEEEEETTTTEEEEEETT------TTEEEEEETTSSSEEEEE
T ss_pred CcEEEEECCCCCCCcccEEEEe----------CCCCCcCEEEEeecCCeEEEEECC------CCEEEEEeCCCCceEEEE
Q ss_pred ccCCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccC
Q 007111 90 AKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGS 168 (617)
Q Consensus 90 ~~g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~ 168 (617)
.....+-...++- .++.||+..-.. ...++++++....-+.+. ......-..-++-.++..||+.-..
T Consensus 116 ---~~~~~~P~~iavdp~~g~ly~~d~~~-----~~~I~~~~~dG~~~~~~~---~~~~~~P~gla~d~~~~~lY~~D~~ 184 (316)
T 1ijq_A 116 ---RENGSKPRAIVVDPVHGFMYWTDWGT-----PAKIKKGGLNGVDIYSLV---TENIQWPNGITLDLLSGRLYWVDSK 184 (316)
T ss_dssp ---ECTTCCEEEEEEETTTTEEEEEECSS-----SCEEEEEETTSCCEEEEE---CSSCSCEEEEEEETTTTEEEEEETT
T ss_pred ---ECCCCCcceEEeCCCCCEEEEEccCC-----CCeEEEEcCCCCCeEEEE---ECCCCCceEEEEeccCCEEEEEECC
Q ss_pred CCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCc
Q 007111 169 SKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 169 ~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
... |+++|+....-..+... ......-.+++..++.+|+.-..+ ..+.++|..+.+
T Consensus 185 ~~~-----I~~~d~dg~~~~~~~~~--~~~~~~P~giav~~~~ly~~d~~~-----~~V~~~~~~~g~ 240 (316)
T 1ijq_A 185 LHS-----ISSIDVNGGNRKTILED--EKRLAHPFSLAVFEDKVFWTDIIN-----EAIFSANRLTGS 240 (316)
T ss_dssp TTE-----EEEEETTSCSCEEEEEC--TTTTSSEEEEEEETTEEEEEETTT-----TEEEEEETTTCC
T ss_pred CCe-----EEEEecCCCceEEEeec--CCccCCcEEEEEECCEEEEEECCC-----CeEEEEeCCCCc
No 486
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=25.44 E-value=54 Score=22.99 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 007111 507 LKSRQEMEKKLADSLKEMELLKEKLAGLELA 537 (617)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~ 537 (617)
++-.+...+.++-+.+.+.+|+.|+..+|.+
T Consensus 8 ~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666777777777888888888754
No 487
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=25.22 E-value=59 Score=28.19 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHh
Q 007111 468 YQFYESKMAALIRKNGILEGQLAAALVNREAAE 500 (617)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~ 500 (617)
.-.+|.|+..++.+.++|.+||++..+..++..
T Consensus 93 s~~red~L~~~laqLe~ls~qL~~ls~~v~~L~ 125 (140)
T 3iyn_Q 93 SSARDDKLTALLAQLDSLTRELNVVSQQLLDLR 125 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999888766655544
No 488
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=25.18 E-value=5.4e+02 Score=25.95 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=12.5
Q ss_pred cccEEEEECCcEEEEEcc
Q 007111 150 SNHVAALYDDKNLLIFGG 167 (617)
Q Consensus 150 ~~h~a~~~~~~~LyV~GG 167 (617)
..|++++..+..+|.+|-
T Consensus 168 ~~hs~alt~~G~v~~wG~ 185 (389)
T 3kci_A 168 GAHSACVTAAGDLYTWGK 185 (389)
T ss_dssp SSEEEEEETTSCEEEEEC
T ss_pred cCeEEEEeCCCeEEEeCC
Confidence 456777765545999984
No 489
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=25.13 E-value=1.3e+02 Score=25.08 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=22.1
Q ss_pred HhHHHHhhcHHHHhhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHH
Q 007111 487 GQLAAALVNREAAEKNFSSV-LKSRQEMEKKLADSLKEMELLKEKL 531 (617)
Q Consensus 487 ~q~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lkek~ 531 (617)
..|+.|...++|-|-.+..+ ...|..+..||.+--+++..||.++
T Consensus 56 ~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 56 EKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444444444433333333 3345566666666666666665543
No 490
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=24.97 E-value=88 Score=21.08 Aligned_cols=10 Identities=10% Similarity=0.242 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 007111 513 MEKKLADSLK 522 (617)
Q Consensus 513 ~~~~~~~~~~ 522 (617)
||.|+.+.+.
T Consensus 6 LE~KVEeLl~ 15 (36)
T 1kd8_B 6 LKAKVEELKS 15 (36)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 491
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=24.81 E-value=1.8e+02 Score=23.65 Aligned_cols=48 Identities=23% Similarity=0.239 Sum_probs=34.9
Q ss_pred HhHHHHhhcHHHHhhhhhhhhhh------HHHHHHHHHHHHHHHHHHHHHHhhh
Q 007111 487 GQLAAALVNREAAEKNFSSVLKS------RQEMEKKLADSLKEMELLKEKLAGL 534 (617)
Q Consensus 487 ~q~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~lkek~~~~ 534 (617)
+.-..|+..-.+|-.-|..+++. ++.+..|..+-+...|.||+.|..-
T Consensus 29 g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~RAE~LK~~l~~~ 82 (93)
T 1wfd_A 29 SRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENIKKYLDQE 82 (93)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44556666666665566665544 7888999999999999999998643
No 492
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=24.80 E-value=2.6e+02 Score=26.90 Aligned_cols=9 Identities=33% Similarity=0.401 Sum_probs=2.3
Q ss_pred hhhHHHHHH
Q 007111 556 EHDVAFLKA 564 (617)
Q Consensus 556 ~~~~~~~~~ 564 (617)
|.|+..|+.
T Consensus 177 e~~~~~l~~ 185 (277)
T 2f1m_A 177 SNDMMRLKQ 185 (277)
T ss_dssp TTTC-----
T ss_pred HHHHHHHhh
Confidence 356666664
No 493
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=24.29 E-value=4.2e+02 Score=24.40 Aligned_cols=107 Identities=14% Similarity=0.222 Sum_probs=59.4
Q ss_pred ECCEEEEEcccCCCCCCceEEEEEECCCCc---EEEeeccC-CCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEE
Q 007111 55 WGKKVLLVGGKTDSGSDRVSVWTFDTETEC---WSVVEAKG-DIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMF 129 (617)
Q Consensus 55 ~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~---W~~~~~~g-~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~y 129 (617)
.++++|+|-|. .+|+|+..+.. =+.+...+ .+|.....++.... ++++|+|-| +..|+|
T Consensus 60 ~~g~~yfFkg~--------~yw~~~~~~~~~gyPk~I~~~~~glP~~~IDAA~~~~~~g~~yfFkG--------~~yw~y 123 (196)
T 3c7x_A 60 KDGKFVFFKGD--------KHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRG--------NKYYRF 123 (196)
T ss_dssp TTSCEEEEETT--------EEEEEETTEECTTCSEEGGGTCBSCCSSCCSEEEEETTTTEEEEEET--------TEEEEE
T ss_pred CCCcEEEecCC--------EEEEEeCCcccCCCCeEhhhcCCCCCCCcccEEEEEccCCEEEEEEC--------CEEEEE
Confidence 36789999774 58999854211 11222211 24544455444432 589999854 457999
Q ss_pred ECCCCcEEE-----eecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCc
Q 007111 130 DLKSLTWLP-----LHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMI 186 (617)
Q Consensus 130 D~~t~~W~~-----l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~ 186 (617)
|..+++-.. +..-..+|. .-.++... ++..+|+|-|. ..|+||..+.+
T Consensus 124 d~~~~~v~~gyPk~i~~~~gip~--~idaAf~~~~~~~~YfFkg~-------~y~r~d~~~~~ 177 (196)
T 3c7x_A 124 NEELRAVDSEYPKNIKVWEGIPE--SPRGSFMGSDEVFTYFYKGN-------KYWKFNNQKLK 177 (196)
T ss_dssp ETTTTEECTTCSEEGGGSBTCCS--SCSEEEECTTSSEEEEEETT-------EEEEEETTTTE
T ss_pred eCCcccccCCCCccHHHCCCcCC--CcceeEEecCCCEEEEEECC-------EEEEEECCcce
Confidence 987754221 110012232 12344444 33258999774 48999987764
No 494
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=24.26 E-value=5.3e+02 Score=25.50 Aligned_cols=64 Identities=8% Similarity=0.074 Sum_probs=34.3
Q ss_pred EEEEEecCCCCCccceEEEEECCCCcE-----EEeecCCCCCCCCC-------cceEEEEEeecCCcEEEEEcCCCCCCC
Q 007111 211 KWYIAGGGSRKKRHAETLIFDILKGEW-----SVAITSPSSSVTSN-------KGFTLVLVQHKEKDFLVAFGGIKKEPS 278 (617)
Q Consensus 211 ~IyI~GG~s~~~~~~~v~~yDl~~~~W-----~~l~~~~~~~p~~r-------~~~s~v~v~~~~~~~L~I~GG~~~~~~ 278 (617)
.+++.|+..+ .+.+||+.+... ..+... ..+... .....+.+.. ++.+++.|+.
T Consensus 240 ~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~~----- 305 (447)
T 3dw8_B 240 NTFVYSSSKG-----TIRLCDMRASALCDRHSKLFEEP--EDPSNRSFFSEIISSISDVKFSH--SGRYMMTRDY----- 305 (447)
T ss_dssp TEEEEEETTS-----CEEEEETTTCSSSCTTCEEECCC-------CCHHHHHTTCEEEEEECT--TSSEEEEEES-----
T ss_pred cEEEEEeCCC-----eEEEEECcCCccccceeeEeccC--CCccccccccccCceEEEEEECC--CCCEEEEeeC-----
Confidence 6777777653 488999887653 222211 000000 1334444443 3445556654
Q ss_pred CeEEEEECCC
Q 007111 279 NQVEVLSIEK 288 (617)
Q Consensus 279 ~dV~vyd~~~ 288 (617)
..|.+||+..
T Consensus 306 ~~v~iwd~~~ 315 (447)
T 3dw8_B 306 LSVKVWDLNM 315 (447)
T ss_dssp SEEEEEETTC
T ss_pred CeEEEEeCCC
Confidence 3789999976
No 495
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=24.25 E-value=1.4e+02 Score=32.23 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 007111 509 SRQEMEKKLADSLKEMELLKEKLA 532 (617)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~lkek~~ 532 (617)
.-.++..+++...++...+++++.
T Consensus 124 ~~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 124 RGREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 496
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=24.22 E-value=1.1e+02 Score=25.69 Aligned_cols=10 Identities=30% Similarity=0.285 Sum_probs=4.0
Q ss_pred hhHHHHHHHH
Q 007111 557 HDVAFLKAVL 566 (617)
Q Consensus 557 ~~~~~~~~~~ 566 (617)
+++++|++-|
T Consensus 72 ~~~~~lk~~L 81 (103)
T 4h22_A 72 FQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444333
No 497
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=24.21 E-value=2.6e+02 Score=26.12 Aligned_cols=70 Identities=21% Similarity=0.192 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhh------------hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHH
Q 007111 472 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV------------LKSRQEMEKKLADSLKEMELLKEKLAGLELAQE 539 (617)
Q Consensus 472 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe 539 (617)
-.+-..|..|...|..|+++|...||-..+.-..| +.+++..-+..+..+-|+-.|.||+--.| |
T Consensus 100 ~~Er~sL~~K~~~L~~Q~EDAkeLKe~ldRRe~~V~~iL~~~L~~eql~DY~~fv~mKa~Ll~eqReLddkIklge---E 176 (190)
T 3thf_A 100 QQERGALESKRDLLYEQMEEAQRLKSDIERRGVSIAGLLAKNLSADMCADYDYFINMKAKLIADARDLAVRIKGSE---E 176 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH---H
Confidence 34556788888999999999999999887754443 45666667777778888888888886443 5
Q ss_pred hhhcc
Q 007111 540 EANSL 544 (617)
Q Consensus 540 ~~~~~ 544 (617)
..+.|
T Consensus 177 QL~~L 181 (190)
T 3thf_A 177 QLSSL 181 (190)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
No 498
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=24.07 E-value=1e+02 Score=31.38 Aligned_cols=28 Identities=14% Similarity=0.176 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007111 508 KSRQEMEKKLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~lkek~~~~e 535 (617)
...+.|+.+|+...+.+..|+++|+.++
T Consensus 26 ~~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 26 AQIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566666677766655
No 499
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=24.04 E-value=1.9e+02 Score=27.78 Aligned_cols=82 Identities=12% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhchhhHhHHHHhhcHHHH---------hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhh
Q 007111 472 ESKMAALIRKNGILEGQLAAALVNREAA---------EKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEAN 542 (617)
Q Consensus 472 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~ 542 (617)
++.+...+.+.+....+++.+....+.. .+-+..-++..++..|||....-++...|.|+..
T Consensus 91 ds~~g~aL~~~g~a~~~ia~~~~~~~~~v~~~~l~pL~~~l~~d~k~i~~~rKkle~~rLd~D~ak~k~~k--------- 161 (240)
T 2z0v_A 91 DSTFGNALIEVGESMKLMAEVKDSLDINVKQTFIDPLQLLQDKDLKEIGHHLKKLEGRRLDYDYKKKRVGK--------- 161 (240)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTTTS---------
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------
Q ss_pred cccccccCCCcchhhhHHHHHHHHHHHHHhh
Q 007111 543 SLSNIVHSDNVRLEHDVAFLKAVLDDTQKEL 573 (617)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (617)
+.|+|+.-.+..++.+..++
T Consensus 162 -----------~~eeEl~~A~~~fe~~~e~~ 181 (240)
T 2z0v_A 162 -----------IPDEEVRQAVEKFEESKELA 181 (240)
T ss_dssp -----------SCHHHHHHHHHHHHHHHHHH
T ss_pred -----------ccHHHHHHHHHHHHHHHHHH
No 500
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=23.71 E-value=1.1e+02 Score=32.74 Aligned_cols=67 Identities=13% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHH---HHHHHHHHHHHHHHHhhhHHhHHhhhc
Q 007111 477 ALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKK---LADSLKEMELLKEKLAGLELAQEEANS 543 (617)
Q Consensus 477 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~lkek~~~~e~~qe~~~~ 543 (617)
+++.+.-.|..+.-+++...+++......+-|...+++++ .+.+..++..||+++..+|....+...
T Consensus 28 ~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 97 (455)
T 2dq0_A 28 KWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKK 97 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!