BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007112
(617 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|B Chain B, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|C Chain C, Crystal Structure Of A Human Malic Enzyme
Length = 575
Score = 572 bits (1475), Expect = e-163, Method: Compositional matrix adjust.
Identities = 280/557 (50%), Positives = 371/557 (66%), Gaps = 7/557 (1%)
Query: 58 GEDFATEDQLITPWTVSVASGYTLLRDPRHNKGLAFTENERDAHYLRGLLPPALMNQELQ 117
G D TE+ + S+ GY L R+P NK LAFT ER + GLLPP+ +QE+Q
Sbjct: 10 GVDLGTENL----YFQSMQRGYLLTRNPHLNKDLAFTLEERQQLNIHGLLPPSFNSQEIQ 65
Query: 118 EKRLMHNLRQYKVPLQRYVAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYG 177
R++ N RY+ +MDLQ+RNE+LFY++L ++E+ +P+VYTPTVG ACQ+Y
Sbjct: 66 VLRVVKNFEHLNSDFDRYLLLMDLQDRNEKLFYRVLTSDIEKFMPIVYTPTVGLACQQYS 125
Query: 178 SIFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLGCQGMGIPVGKL 237
+FR+P+GL+I++ ++G I VL WPE I+ IVVTDGERILGLGDLGC GMGIPVGKL
Sbjct: 126 LVFRKPRGLFITIHDRGHIASVLNAWPEDVIKAIVVTDGERILGLGDLGCNGMGIPVGKL 185
Query: 238 SLYTALGGLRPSACLPITIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQ 297
+LYTA GG+ P CLP+ +DVGT NE+LL D YIGLRQ+R G EY + L EFM AV
Sbjct: 186 ALYTACGGMNPQECLPVILDVGTENEELLKDPLYIGLRQRRVRGSEYDDFLDEFMEAVSS 245
Query: 298 NYGEKVLIQFEDFANHNAFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLAD 357
YG LIQFEDFAN NAF LL+KY + + FNDDIQGTASV +AG+L+AL++ L+D
Sbjct: 246 KYGMNCLIQFEDFANVNAFRLLNKYRNQYCTFNDDIQGTASVAVAGLLAALRITKNKLSD 305
Query: 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKK 417
QT LF GAGEA GIA LI + + K+ P E+A KKIWLVDSKGLIV R SL K+
Sbjct: 306 QTILFQGAGEAALGIAHLIVMALEKE-GLPKEKAIKKIWLVDSKGLIVKGRA-SLTQEKE 363
Query: 418 PWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQ 477
+AHEH +K+L V+ IKPT L+G + +G F++++++ MA+FNE+P+IFALSNPTS+
Sbjct: 364 KFAHEHEEMKNLEAIVQEIKPTALIGVAAIGGAFSEQILKDMAAFNERPIIFALSNPTSK 423
Query: 478 SECTAEEAYTWSKGQAIFASGSPFDPVEY-NGKVFVPGQGNNAYIFPXXXXXXIISGAIR 536
+EC+AE+ Y +KG+AIFASGSPFDPV NG+ PGQGNN+Y+FP + G +
Sbjct: 424 AECSAEQCYKITKGRAIFASGSPFDPVTLPNGQTLYPGQGNNSYVFPGVALGVVACGLRQ 483
Query: 537 VRDEMXXXXXXXXXXQVTQEHFDKGLIYPPFTNIRXXXXXXXXXXXXXXYDLGLASRLPR 596
+ D + QV+ +H ++G +YPP IR Y A+ P
Sbjct: 484 ITDNIFLTTAEVIAQQVSDKHLEEGRLYPPLNTIRDVSLKIAEKIVKDAYQEKTATVYPE 543
Query: 597 PKDLVSYAESCMYSPMY 613
P++ ++ S MYS Y
Sbjct: 544 PQNKEAFVRSQMYSTDY 560
>pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver
pdb|1GQ2|B Chain B, Malic Enzyme From Pigeon Liver
pdb|1GQ2|C Chain C, Malic Enzyme From Pigeon Liver
pdb|1GQ2|D Chain D, Malic Enzyme From Pigeon Liver
pdb|1GQ2|E Chain E, Malic Enzyme From Pigeon Liver
pdb|1GQ2|F Chain F, Malic Enzyme From Pigeon Liver
pdb|1GQ2|G Chain G, Malic Enzyme From Pigeon Liver
pdb|1GQ2|H Chain H, Malic Enzyme From Pigeon Liver
pdb|1GQ2|I Chain I, Malic Enzyme From Pigeon Liver
pdb|1GQ2|J Chain J, Malic Enzyme From Pigeon Liver
pdb|1GQ2|K Chain K, Malic Enzyme From Pigeon Liver
pdb|1GQ2|L Chain L, Malic Enzyme From Pigeon Liver
pdb|1GQ2|M Chain M, Malic Enzyme From Pigeon Liver
pdb|1GQ2|N Chain N, Malic Enzyme From Pigeon Liver
pdb|1GQ2|O Chain O, Malic Enzyme From Pigeon Liver
pdb|1GQ2|P Chain P, Malic Enzyme From Pigeon Liver
Length = 555
Score = 553 bits (1424), Expect = e-157, Method: Compositional matrix adjust.
Identities = 271/540 (50%), Positives = 356/540 (65%), Gaps = 3/540 (0%)
Query: 78 GYTLLRDPRHNKGLAFTENERDAHYLRGLLPPALMNQELQEKRLMHNLRQYKVPLQRYVA 137
GY +LRDP NKG AFT ER + GLLPP + Q+ Q ++ N + L RY+
Sbjct: 3 GYEVLRDPHLNKGXAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYIL 62
Query: 138 MMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKIL 197
+ LQ+RNE+LFYK+L ++E P+VYTPTVG ACQ YG FRRP+GL+I++ ++G I
Sbjct: 63 LXSLQDRNEKLFYKVLTSDIERFXPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIA 122
Query: 198 EVLKNWPERNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGLRPSACLPITID 257
L++WPE I+ IVVTDGERILGLGDLGC G GIPVGKL+LYTA GG++P CLP+ +D
Sbjct: 123 TXLQSWPESVIKAIVVTDGERILGLGDLGCYGXGIPVGKLALYTACGGVKPHQCLPVXLD 182
Query: 258 VGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAFE 317
VGT+NE LL D YIGLR KR GQ Y +LL EF AV YG LIQFEDFAN NAF
Sbjct: 183 VGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFXEAVTSRYGXNCLIQFEDFANANAFR 242
Query: 318 LLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIA 377
LL KY + + FNDDIQGTASV +AG+L+AL++ L+D T LF GAGEA GIA LI
Sbjct: 243 LLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIV 302
Query: 378 LEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIK 437
K+ + EEA K+IW VDSKGLIV R SL K+ +AHEH K+L D VK IK
Sbjct: 303 XAXQKEGVSK-EEAIKRIWXVDSKGLIVKGRA-SLTPEKEHFAHEHCEXKNLEDIVKDIK 360
Query: 438 PTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFAS 497
PT+L+G + +G FT+++++ A+FN++P+IFALSNPTS++ECTAE+ Y +++G+ IFAS
Sbjct: 361 PTVLIGVAAIGGAFTQQILQDXAAFNKRPIIFALSNPTSKAECTAEQLYKYTEGRGIFAS 420
Query: 498 GSPFDPVEY-NGKVFVPGQGNNAYIFPXXXXXXIISGAIRVRDEMXXXXXXXXXXQVTQE 556
GSPFDPV +G+ PGQGNN+Y+FP I G + D++ +V++E
Sbjct: 421 GSPFDPVTLPSGQTLYPGQGNNSYVFPGVALGVISCGLKHIGDDVFLTTAEVIAQEVSEE 480
Query: 557 HFDKGLIYPPFTNIRXXXXXXXXXXXXXXYDLGLASRLPRPKDLVSYAESCMYSPMYRSY 616
+ +G +YPP I+ Y AS P+P+DL ++ S +YS Y +
Sbjct: 481 NLQEGRLYPPLVTIQQVSLKIAVRIAKEAYRNNTASTYPQPEDLEAFIRSQVYSTDYNCF 540
>pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|B Chain B, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|C Chain C, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|D Chain D, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 554
Score = 534 bits (1375), Expect = e-152, Method: Compositional matrix adjust.
Identities = 264/542 (48%), Positives = 357/542 (65%), Gaps = 6/542 (1%)
Query: 78 GYTLLRDPRHNKGLAFTENERDAHYLRGLLPPALMNQELQEKRLMHNLRQYKVPLQRYVA 137
G L+ +PR NKG+AFT ER L+GLLPP + Q++Q R NL++ PL++Y+
Sbjct: 6 GKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSPLEKYIY 65
Query: 138 MMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKIL 197
+M +QERNE+LFY++L D++E L+P+VYTPTVG AC +YG IFRRP+GL+IS+ ++G +
Sbjct: 66 IMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVR 125
Query: 198 EVLKNWPERNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGLRPSACLPITID 257
++ NWPE +++ +VVTDGERILGLGDLG GMGIPVGKL LYTA G+RP CLP+ ID
Sbjct: 126 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDQCLPVCID 185
Query: 258 VGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAFE 317
VGT+N LL D FY+GL QKR Q+Y +L+ EFM A+ YG LIQFEDF NHNAF
Sbjct: 186 VGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAFR 245
Query: 318 LLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIA 377
L KY + FNDDIQGTA+V LAG+L+A K++ +++ LFLGAGEA GIA LI
Sbjct: 246 FLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIV 305
Query: 378 LEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH---EHAPIKSLLDAVK 434
+ M + + +EA+KKIW+ D GL+V RK + +++P+ H E P + DAV
Sbjct: 306 MSMVENGLSE-QEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIP-DTFEDAVN 363
Query: 435 AIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAI 494
+KP+ ++G +G G+ FT +V+ AMAS NE+PVIFALSNPT+Q+ECTAEEAYT ++G+ +
Sbjct: 364 ILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTLTEGRCL 423
Query: 495 FASGSPFDPVEY-NGKVFVPGQGNNAYIFPXXXXXXIISGAIRVRDEMXXXXXXXXXXQV 553
FASGSPF PV+ +G+VF PGQGNN YIFP I+ + D + Q+
Sbjct: 424 FASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQL 483
Query: 554 TQEHFDKGLIYPPFTNIRXXXXXXXXXXXXXXYDLGLASRLPRPKDLVSYAESCMYSPMY 613
T E +G +YPP NI+ Y +A P P+D Y + + Y
Sbjct: 484 TDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKMAFVYPEPEDKAKYVKEQTWRSEY 543
Query: 614 RS 615
S
Sbjct: 544 DS 545
>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1LLQ|B Chain B, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1O0S|A Chain A, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
pdb|1O0S|B Chain B, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
Length = 605
Score = 518 bits (1334), Expect = e-147, Method: Compositional matrix adjust.
Identities = 258/536 (48%), Positives = 354/536 (66%), Gaps = 6/536 (1%)
Query: 81 LLRDPRHNKGLAFTENERDAHYLRGLLPPALMNQELQEKRLMHNLRQYKVPLQRYVAMMD 140
LL++PR NKG+ F+ ER L GLLPPA M QE Q R++ LR+ L RY+ +
Sbjct: 42 LLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVITKLREQPNDLARYIQLDG 101
Query: 141 LQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKG--KILE 198
LQ+RNE+LFY+++ D+V+EL+P+VYTPTVG ACQ +G I+R+P+GLYI++ + KI +
Sbjct: 102 LQDRNEKLFYRVVCDHVKELMPIVYTPTVGLACQNFGYIYRKPKGLYITINDNSVSKIYQ 161
Query: 199 VLKNWPERNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGLRPSACLPITIDV 258
+L NW E +++ IVVTDGERILGLGDLG G+GIPVGKL+LY ALGG++P CLP+ +DV
Sbjct: 162 ILSNWHEEDVRAIVVTDGERILGLGDLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDV 221
Query: 259 GTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAFEL 318
GTNN LLND FYIGLR KR G++Y LL FM A + YG+K LIQFEDFAN NAF L
Sbjct: 222 GTNNMDLLNDPFYIGLRHKRVRGKDYDTLLDNFMKACTKKYGQKTLIQFEDFANPNAFRL 281
Query: 319 LSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIAL 378
L KY + +FNDDIQGTASV++AG+L+ ++ ++ + +LF GAG A TGIAE+I
Sbjct: 282 LDKYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVH 341
Query: 379 EMSKQTKAPIEEARKKIWLVDSKGLIVSSRKE-SLQHFKKPWAHEHAPIKSLLDAVKAIK 437
+M + + EEA +I+L+D GL+ +RKE + +H + +A + S+L+ ++A +
Sbjct: 342 QMQNEGISK-EEACNRIYLMDIDGLVTKNRKEMNPRHVQ--FAKDMPETTSILEVIRAAR 398
Query: 438 PTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFAS 497
P L+G S V F +EV+ AMA NE+P+IFALSNPTS++ECTAEEAYT++ G A++AS
Sbjct: 399 PGALIGASTVRGAFNEEVIRAMAEINERPIIFALSNPTSKAECTAEEAYTFTNGAALYAS 458
Query: 498 GSPFDPVEYNGKVFVPGQGNNAYIFPXXXXXXIISGAIRVRDEMXXXXXXXXXXQVTQEH 557
GSPF E NG + PGQGNNAYIFP I+ V +++ VT++
Sbjct: 459 GSPFPNFELNGHTYKPGQGNNAYIFPGVALGTILFQIRHVDNDLFLLAAKKVASCVTEDS 518
Query: 558 FDKGLIYPPFTNIRXXXXXXXXXXXXXXYDLGLASRLPRPKDLVSYAESCMYSPMY 613
G +YP IR Y G A+ P+P+DL Y + +Y+ Y
Sbjct: 519 LKVGRVYPQLKEIREISIQIAVEMAKYCYKNGTANLYPQPEDLEKYVRAQVYNTEY 574
>pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
pdb|1QR6|B Chain B, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
Length = 584
Score = 517 bits (1331), Expect = e-147, Method: Compositional matrix adjust.
Identities = 260/542 (47%), Positives = 346/542 (63%), Gaps = 6/542 (1%)
Query: 78 GYTLLRDPRHNKGLAFTENERDAHYLRGLLPPALMNQELQEKRLMHNLRQYKVPLQRYVA 137
G L +PR NKG AFT ER L+GLLPP + Q++Q R NL++ PL++Y+
Sbjct: 25 GKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIY 84
Query: 138 MMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKIL 197
+ +QERNE+LFY++L D++E L P+VYTPTVG AC +YG IFRRP+GL+IS+ ++G +
Sbjct: 85 IXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVR 144
Query: 198 EVLKNWPERNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGLRPSACLPITID 257
++ NWPE +++ +VVTDGERILGLGDLG G GIPVGKL LYTA G+RP CLP+ ID
Sbjct: 145 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCID 204
Query: 258 VGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAFE 317
VGT+N LL D FY GL QKR Q+Y +L+ EF A+ YG LIQFEDF NHNAF
Sbjct: 205 VGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFR 264
Query: 318 LLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIA 377
L KY + FNDDIQGTA+V LAG+L+A K++ +++ LFLGAGEA GIA LI
Sbjct: 265 FLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIV 324
Query: 378 LEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH---EHAPIKSLLDAVK 434
+ + +EA+KKIW D GL+V RK + +++P+ H E P + DAV
Sbjct: 325 XSXVENGLSE-QEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIP-DTFEDAVN 382
Query: 435 AIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAI 494
+KP+ ++G +G G+ FT +V+ A AS NE+PVIFALSNPT+Q+ECTAEEAYT ++G+ +
Sbjct: 383 ILKPSTIIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCL 442
Query: 495 FASGSPFDPVEY-NGKVFVPGQGNNAYIFPXXXXXXIISGAIRVRDEMXXXXXXXXXXQV 553
FASGSPF PV+ +G+VF PGQGNN YIFP I+ + D + Q+
Sbjct: 443 FASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQL 502
Query: 554 TQEHFDKGLIYPPFTNIRXXXXXXXXXXXXXXYDLGLASRLPRPKDLVSYAESCMYSPMY 613
T E +G +YPP NI+ Y A R P P+D Y + + Y
Sbjct: 503 TDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKXAFRYPEPEDKAKYVKERTWRSEY 562
Query: 614 RS 615
S
Sbjct: 563 DS 564
>pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|B Chain B, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|C Chain C, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|D Chain D, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFL|A Chain A, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|B Chain B, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|C Chain C, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|D Chain D, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1PJL|A Chain A, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|B Chain B, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|C Chain C, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|D Chain D, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|E Chain E, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|F Chain F, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|G Chain G, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|H Chain H, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
Length = 584
Score = 517 bits (1331), Expect = e-147, Method: Compositional matrix adjust.
Identities = 260/542 (47%), Positives = 346/542 (63%), Gaps = 6/542 (1%)
Query: 78 GYTLLRDPRHNKGLAFTENERDAHYLRGLLPPALMNQELQEKRLMHNLRQYKVPLQRYVA 137
G L +PR NKG AFT ER L+GLLPP + Q++Q R NL++ PL++Y+
Sbjct: 25 GKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIY 84
Query: 138 MMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKIL 197
+ +QERNE+LFY++L D++E L P+VYTPTVG AC +YG IFRRP+GL+IS+ ++G +
Sbjct: 85 IXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVR 144
Query: 198 EVLKNWPERNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGLRPSACLPITID 257
++ NWPE +++ +VVTDGERILGLGDLG G GIPVGKL LYTA G+RP CLP+ ID
Sbjct: 145 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCID 204
Query: 258 VGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAFE 317
VGT+N LL D FY GL QKR Q+Y +L+ EF A+ YG LIQFEDF NHNAF
Sbjct: 205 VGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFR 264
Query: 318 LLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIA 377
L KY + FNDDIQGTA+V LAG+L+A K++ +++ LFLGAGEA GIA LI
Sbjct: 265 FLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIV 324
Query: 378 LEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH---EHAPIKSLLDAVK 434
+ + +EA+KKIW D GL+V RK + +++P+ H E P + DAV
Sbjct: 325 XSXVENGLSE-QEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIP-DTFEDAVN 382
Query: 435 AIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAI 494
+KP+ ++G +G G+ FT +V+ A AS NE+PVIFALSNPT+Q+ECTAEEAYT ++G+ +
Sbjct: 383 ILKPSTIIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCL 442
Query: 495 FASGSPFDPVEY-NGKVFVPGQGNNAYIFPXXXXXXIISGAIRVRDEMXXXXXXXXXXQV 553
FASGSPF PV+ +G+VF PGQGNN YIFP I+ + D + Q+
Sbjct: 443 FASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQL 502
Query: 554 TQEHFDKGLIYPPFTNIRXXXXXXXXXXXXXXYDLGLASRLPRPKDLVSYAESCMYSPMY 613
T E +G +YPP NI+ Y A R P P+D Y + + Y
Sbjct: 503 TDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKXAFRYPEPEDKAKYVKERTWRSEY 562
Query: 614 RS 615
S
Sbjct: 563 DS 564
>pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|B Chain B, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|C Chain C, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|D Chain D, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1PJ4|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ2|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ3|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate
Length = 564
Score = 516 bits (1329), Expect = e-146, Method: Compositional matrix adjust.
Identities = 260/542 (47%), Positives = 346/542 (63%), Gaps = 6/542 (1%)
Query: 78 GYTLLRDPRHNKGLAFTENERDAHYLRGLLPPALMNQELQEKRLMHNLRQYKVPLQRYVA 137
G L +PR NKG AFT ER L+GLLPP + Q++Q R NL++ PL++Y+
Sbjct: 5 GKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIY 64
Query: 138 MMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKIL 197
+ +QERNE+LFY++L D++E L P+VYTPTVG AC +YG IFRRP+GL+IS+ ++G +
Sbjct: 65 IXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVR 124
Query: 198 EVLKNWPERNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGLRPSACLPITID 257
++ NWPE +++ +VVTDGERILGLGDLG G GIPVGKL LYTA G+RP CLP+ ID
Sbjct: 125 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCID 184
Query: 258 VGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAFE 317
VGT+N LL D FY GL QKR Q+Y +L+ EF A+ YG LIQFEDF NHNAF
Sbjct: 185 VGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFR 244
Query: 318 LLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIA 377
L KY + FNDDIQGTA+V LAG+L+A K++ +++ LFLGAGEA GIA LI
Sbjct: 245 FLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIV 304
Query: 378 LEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH---EHAPIKSLLDAVK 434
+ + +EA+KKIW D GL+V RK + +++P+ H E P + DAV
Sbjct: 305 XSXVENGLSE-QEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIP-DTFEDAVN 362
Query: 435 AIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAI 494
+KP+ ++G +G G+ FT +V+ A AS NE+PVIFALSNPT+Q+ECTAEEAYT ++G+ +
Sbjct: 363 ILKPSTIIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCL 422
Query: 495 FASGSPFDPVEY-NGKVFVPGQGNNAYIFPXXXXXXIISGAIRVRDEMXXXXXXXXXXQV 553
FASGSPF PV+ +G+VF PGQGNN YIFP I+ + D + Q+
Sbjct: 423 FASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQL 482
Query: 554 TQEHFDKGLIYPPFTNIRXXXXXXXXXXXXXXYDLGLASRLPRPKDLVSYAESCMYSPMY 613
T E +G +YPP NI+ Y A R P P+D Y + + Y
Sbjct: 483 TDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKXAFRYPEPEDKAKYVKERTWRSEY 542
Query: 614 RS 615
S
Sbjct: 543 DS 544
>pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|B Chain B, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|C Chain C, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|D Chain D, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 551
Score = 515 bits (1327), Expect = e-146, Method: Compositional matrix adjust.
Identities = 260/542 (47%), Positives = 346/542 (63%), Gaps = 6/542 (1%)
Query: 78 GYTLLRDPRHNKGLAFTENERDAHYLRGLLPPALMNQELQEKRLMHNLRQYKVPLQRYVA 137
G L +PR NKG AFT ER L+GLLPP + Q++Q R NL++ PL++Y+
Sbjct: 3 GKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIY 62
Query: 138 MMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKIL 197
+ +QERNE+LFY++L D++E L P+VYTPTVG AC +YG IFRRP+GL+IS+ ++G +
Sbjct: 63 IXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVR 122
Query: 198 EVLKNWPERNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGLRPSACLPITID 257
++ NWPE +++ +VVTDGERILGLGDLG G GIPVGKL LYTA G+RP CLP+ ID
Sbjct: 123 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCID 182
Query: 258 VGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAFE 317
VGT+N LL D FY GL QKR Q+Y +L+ EF A+ YG LIQFEDF NHNAF
Sbjct: 183 VGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFR 242
Query: 318 LLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIA 377
L KY + FNDDIQGTA+V LAG+L+A K++ +++ LFLGAGEA GIA LI
Sbjct: 243 FLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIV 302
Query: 378 LEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH---EHAPIKSLLDAVK 434
+ + +EA+KKIW D GL+V RK + +++P+ H E P + DAV
Sbjct: 303 XSXVENGLSE-QEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIP-DTFEDAVN 360
Query: 435 AIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAI 494
+KP+ ++G +G G+ FT +V+ A AS NE+PVIFALSNPT+Q+ECTAEEAYT ++G+ +
Sbjct: 361 ILKPSTIIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCL 420
Query: 495 FASGSPFDPVEY-NGKVFVPGQGNNAYIFPXXXXXXIISGAIRVRDEMXXXXXXXXXXQV 553
FASGSPF PV+ +G+VF PGQGNN YIFP I+ + D + Q+
Sbjct: 421 FASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQL 480
Query: 554 TQEHFDKGLIYPPFTNIRXXXXXXXXXXXXXXYDLGLASRLPRPKDLVSYAESCMYSPMY 613
T E +G +YPP NI+ Y A R P P+D Y + + Y
Sbjct: 481 TDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKXAFRYPEPEDKAKYVKERTWRSEY 540
Query: 614 RS 615
S
Sbjct: 541 DS 542
>pdb|3NV9|A Chain A, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
pdb|3NV9|B Chain B, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
Length = 487
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 147/342 (42%), Gaps = 62/342 (18%)
Query: 210 VIVVTDGERILGLGDLGCQG-MGIPVGKLSLYTALGGLRPSACLPITIDVGTNNEQLLND 268
V VV+D R+LG GD+ G +G+ GK L LGG+ +PI ID
Sbjct: 93 VGVVSDSTRVLGDGDVTPPGGLGVMEGKALLMKYLGGID---AVPICID----------- 138
Query: 269 EFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAFELLS--KYSSSH 326
K G+ + + EF+ ++ +G I ED + N +++L + S
Sbjct: 139 -------SKNKEGKNDPDAVIEFVQRIQHTFGA---INLEDISQPNCYKILDVLRESCDI 188
Query: 327 LVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKA 386
V++DD QGTASV LAG+L+ALKLV + + +F+GAG + T LI +
Sbjct: 189 PVWHDDQQGTASVTLAGLLNALKLVKKDIHECRMVFIGAGSSNTTCLRLIVTAGADP--- 245
Query: 387 PIEEARKKIWLVDSKGLIVSSRKESLQ--HFKKPW--AHEHAPIKSLLDAVKAIKPTMLM 442
KKI + DSKG + + R++ + F + W P K A + +L+
Sbjct: 246 ------KKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACVGADVLI 299
Query: 443 GTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQ---SECTAEEAYTWSKGQAIFASGS 499
S G K E + S EKP++F +NP + E AY + G+ F
Sbjct: 300 SLSTPGPGVVK--AEWIKSMGEKPIVFCCANPVPEIYPYEAKEAGAYIVATGRGDF---- 353
Query: 500 PFDPVEYNGKVFVPGQGNNAYIFPXXXXXXIISGAIRVRDEM 541
P Q NN+ FP +I A ++ D M
Sbjct: 354 -------------PNQVNNSVGFPGILKGALIVRARKITDNM 382
>pdb|2DVM|A Chain A, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|B Chain B, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|C Chain C, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|D Chain D, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
Length = 439
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 110/378 (29%), Positives = 171/378 (45%), Gaps = 82/378 (21%)
Query: 151 KLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERNIQV 210
K+ +++ EEL + YTP V E C++ I R P +Y KG + V
Sbjct: 25 KVSLESREELT-LAYTPGVAEPCKE---IARDPGKVY-EYTSKGNL-------------V 66
Query: 211 IVVTDGERILGLGDLGCQGMGIPV--GKLSLYTALGGLRPSACLPITIDVGTNNEQLLND 268
VV+DG RILGLG++G G+PV GK L+ GG+ D
Sbjct: 67 AVVSDGSRILGLGNIGPLA-GLPVMEGKALLFKRFGGV---------------------D 104
Query: 269 EFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAFELLSKYSS--SH 326
F I +++ QE + + + + A+ +G I ED A+ F +L +
Sbjct: 105 AFPIMIKE-----QEPNKFI-DIVKAIAPTFGG---INLEDIASPKCFYILERLREELDI 155
Query: 327 LVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKA 386
VF+DD QGTA+VVLAG+L+ALK+VG +++ T GAG AG ++ T+A
Sbjct: 156 PVFHDDQQGTAAVVLAGLLNALKVVGKKISEITLALFGAGAAGFATLRIL-------TEA 208
Query: 387 PIE-EARKKIWLVDSKGLIVSSRKESLQHFK-KPWAH--------EHAPIKSLLDAVKAI 436
++ E + + LV+ K I++S + + F + W E P ++L DA
Sbjct: 209 GVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDA---- 264
Query: 437 KPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFA 496
+L+ + G K + + NE ++F L+NP E EEA G I A
Sbjct: 265 --DVLISFTRPGPGVIKP--QWIEKMNEDAIVFPLANPV--PEILPEEAK--KAGARIVA 316
Query: 497 SGSPFDPVEYNGKVFVPG 514
+G P + N + PG
Sbjct: 317 TGRSDYPNQINNLLGFPG 334
>pdb|1WW8|A Chain A, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
pdb|1WW8|B Chain B, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
Length = 439
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 108/377 (28%), Positives = 170/377 (45%), Gaps = 80/377 (21%)
Query: 151 KLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERNIQV 210
K+ +++ EEL + YTP V E C++ I R P +Y KG + V
Sbjct: 25 KVSLESREELT-LAYTPGVAEPCKE---IARDPGKVY-EYTSKGNL-------------V 66
Query: 211 IVVTDGERILGLGDLG-CQGMGIPVGKLSLYTALGGLRPSACLPITIDVGTNNEQLLNDE 269
VV+DG RILGLG++G G+ + GK L+ GG+ D
Sbjct: 67 AVVSDGSRILGLGNIGPLAGLPVXEGKALLFKRFGGV---------------------DA 105
Query: 270 FYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAFELLSKYSS--SHL 327
F I +++ QE + + + + A+ +G I ED A+ F +L +
Sbjct: 106 FPIXIKE-----QEPNKFI-DIVKAIAPTFGG---INLEDIASPKCFYILERLREELDIP 156
Query: 328 VFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAP 387
VF+DD QGTA+VVLAG+L+ALK+VG +++ T GAG AG ++ T+A
Sbjct: 157 VFHDDQQGTAAVVLAGLLNALKVVGKKISEITLALFGAGAAGFATLRIL-------TEAG 209
Query: 388 IE-EARKKIWLVDSKGLIVSSRKESLQHFK-KPWAH--------EHAPIKSLLDAVKAIK 437
++ E + + LV+ K I++S + + F + W E P ++L DA
Sbjct: 210 VKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDA----- 264
Query: 438 PTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFAS 497
+L+ + G K + + NE ++F L+NP E EEA G I A+
Sbjct: 265 -DVLISFTRPGPGVIKP--QWIEKXNEDAIVFPLANPV--PEILPEEAK--KAGARIVAT 317
Query: 498 GSPFDPVEYNGKVFVPG 514
G P + N + PG
Sbjct: 318 GRSDYPNQINNLLGFPG 334
>pdb|2A9F|A Chain A, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
pdb|2A9F|B Chain B, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
Length = 398
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 145/346 (41%), Gaps = 94/346 (27%)
Query: 210 VIVVTDGERILGLGDLGCQGMGIPV--GKLSLYTALGGLRPSACLPITIDVGTNNEQLLN 267
V V++DG +LGLGD+G + +PV GK +L+ A G+ +PI +D + E++++
Sbjct: 68 VAVISDGTAVLGLGDIGPEA-AMPVMEGKAALFKAFAGVD---AIPIVLDT-KDTEEIIS 122
Query: 268 DEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAFELLSK-YSSSH 326
+ A+ +G I ED + FE+ + H
Sbjct: 123 -----------------------IVKALAPTFGG---INLEDISAPRCFEIEQRLIKECH 156
Query: 327 L-VFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTK 385
+ VF+DD GTA VVLA I ++LKL+ +L + + + G G AG I T+
Sbjct: 157 IPVFHDDQHGTAIVVLAAIFNSLKLLKKSLDEVSIVVNGGGSAGLSI-----------TR 205
Query: 386 APIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIK----------SLLDAVKA 435
+ K+ +VD G+I + +E+ Q A H I +L DA++
Sbjct: 206 KLLAAGATKVTVVDKFGII--NEQEAAQ-----LAPHHLDIAKVTNREFKSGTLEDALEG 258
Query: 436 IKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQ---SECTAEEAYTWSKGQ 492
+ +G S G E + MA+ +PVIFA++NP + E AY G+
Sbjct: 259 --ADIFIGVSAPG-VLKAEWISKMAA---RPVIFAMANPIPEIYPDEALEAGAYIVGTGR 312
Query: 493 AIFASGSPFDPVEYNGKVFVPGQGNNAYIFPXXXXXXIISGAIRVR 538
+ F P Q NN FP I GA+ R
Sbjct: 313 SDF-----------------PNQINNVLAFP-----GIFRGALDAR 336
>pdb|2HAE|A Chain A, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|B Chain B, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|C Chain C, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|D Chain D, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
Length = 386
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 93/362 (25%), Positives = 145/362 (40%), Gaps = 73/362 (20%)
Query: 159 ELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDGER 218
E L ++YTP V + + + P+ Y+ + R V VV+DG
Sbjct: 28 ETLSLLYTPGVADVAR---ACAEDPEKTYV--------------YTSRWNTVAVVSDGSA 70
Query: 219 ILGLGDLGCQGMGIPV--GKLSLYTALGGLRPSACLPITIDVGTNNEQLLNDEFYIGLRQ 276
+LGLG++G G +PV GK L+ A + D F I L +
Sbjct: 71 VLGLGNIGPYG-ALPVMEGKAFLFKAFADI---------------------DAFPICLSE 108
Query: 277 KRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAFELLSKYSSSH--LVFNDDIQ 334
E + + +++ ++G I ED F +L + S VF+DD Q
Sbjct: 109 SEE------EKIISIVKSLEPSFGG---INLEDIGAPKCFRILQRLSEEMNIPVFHDDQQ 159
Query: 335 GTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKK 394
GTA VV A L+ALKL + + + G G AG I + + ++ K
Sbjct: 160 GTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFL-----------LDLGVKN 208
Query: 395 IWLVDSKGLIVSSRKES-LQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTK 453
+ VD KG++ + E+ L + A P + D A++ G
Sbjct: 209 VVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVSRGNILKP 268
Query: 454 EVVEAMASFNEKPVIFALSNPTSQSECT-AEEAYTWSKGQAIFASGSPFDPVEYNGKVFV 512
E ++ M+ KPVIFAL+NP + + A EA G I A+G P + N +
Sbjct: 269 EWIKKMS---RKPVIFALANPVPEIDPELAREA-----GAFIVATGRSDHPNQVNNLLAF 320
Query: 513 PG 514
PG
Sbjct: 321 PG 322
>pdb|1VL6|A Chain A, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|B Chain B, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|C Chain C, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|D Chain D, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
Length = 388
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 92/362 (25%), Positives = 144/362 (39%), Gaps = 73/362 (20%)
Query: 159 ELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDGER 218
E L ++YTP V + + + P+ Y+ + R V VV+DG
Sbjct: 38 ETLSLLYTPGVADVAR---ACAEDPEKTYV--------------YTSRWNTVAVVSDGSA 80
Query: 219 ILGLGDLGCQGMGIPV--GKLSLYTALGGLRPSACLPITIDVGTNNEQLLNDEFYIGLRQ 276
+LGLG++G G +PV GK L+ A + D F I L +
Sbjct: 81 VLGLGNIGPYG-ALPVXEGKAFLFKAFADI---------------------DAFPICLSE 118
Query: 277 KRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAFELLSKYSSSH--LVFNDDIQ 334
E + + +++ ++G I ED F +L + S VF+DD Q
Sbjct: 119 SEE------EKIISIVKSLEPSFGG---INLEDIGAPKCFRILQRLSEEXNIPVFHDDQQ 169
Query: 335 GTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKK 394
GTA VV A L+ALKL + + + G G AG I + + ++ K
Sbjct: 170 GTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFL-----------LDLGVKN 218
Query: 395 IWLVDSKGLIVSSRKES-LQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTK 453
+ VD KG++ + E+ L + A P + D A++ G
Sbjct: 219 VVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVSRGNILKP 278
Query: 454 EVVEAMASFNEKPVIFALSNPTSQSECT-AEEAYTWSKGQAIFASGSPFDPVEYNGKVFV 512
E ++ + KPVIFAL+NP + + A EA G I A+G P + N +
Sbjct: 279 EWIKKXS---RKPVIFALANPVPEIDPELAREA-----GAFIVATGRSDHPNQVNNLLAF 330
Query: 513 PG 514
PG
Sbjct: 331 PG 332
>pdb|2X5F|A Chain A, Crystal Structure Of The Methicillin-Resistant
Staphylococcus Aureus Sar2028, An
Aspartate_tyrosine_phenylalanine Pyridoxal-5'-Phosphate
Dependent Aminotransferase
pdb|2X5F|B Chain B, Crystal Structure Of The Methicillin-Resistant
Staphylococcus Aureus Sar2028, An
Aspartate_tyrosine_phenylalanine Pyridoxal-5'-Phosphate
Dependent Aminotransferase
Length = 430
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 20/133 (15%)
Query: 166 TPTVGEACQKYG--------SIFRRPQGLYISLKEKGKILEVLKNWPERNIQVI-VVTDG 216
T ++ EA Q Y + P G + KE I+E +K + +VI VV D
Sbjct: 176 TDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDA 235
Query: 217 ERILGLGDLGCQGMGIPVGKLSLYTALGGLRPSACLPITIDVGTNNEQLLNDEFYIGLRQ 276
L D+ Q SL+TAL L +A LPI +D T ++ F +G
Sbjct: 236 YYGLFYEDVYTQ---------SLFTALTNLHSNAILPIRLDGAT--KEFFAWGFRVGFMT 284
Query: 277 KRATGQEYAELLQ 289
+ Q E+L+
Sbjct: 285 FGTSDQTTKEVLE 297
>pdb|3UWX|B Chain B, Crystal Structure Of Uvra-Uvrb Complex
Length = 683
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 417 KPWAHEHAPIKSLLDAVK-AIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPT 475
+P + I L+D ++ +K L+G +G GKTFT + +A N KP + N T
Sbjct: 37 EPQGDQPQAIAKLVDGLRLGVKHQTLLGATGTGKTFT--ISNVIAQVN-KPTLVIAHNKT 93
Query: 476 SQSECTAE 483
+ +E
Sbjct: 94 LAGQLHSE 101
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 417 KPWAHEHAPIKSLLDAVK-AIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPT 475
+P + I L+D ++ +K L+G +G GKTFT + +A N KP + N T
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVN-KPTLVIAHNKT 68
Query: 476 SQSECTAE 483
+ +E
Sbjct: 69 LAGQLYSE 76
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 417 KPWAHEHAPIKSLLDAVK-AIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPT 475
+P + I L+D ++ +K L+G +G GKTFT + +A N KP + N T
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVN-KPTLVIAHNKT 68
Query: 476 SQSECTAE 483
+ +E
Sbjct: 69 LAGQLYSE 76
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 417 KPWAHEHAPIKSLLDAVK-AIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPT 475
+P + I L+D ++ +K L+G +G GKTFT + +A N KP + N T
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVN-KPTLVIAHNKT 68
Query: 476 SQSECTAE 483
+ +E
Sbjct: 69 LAGQLYSE 76
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 417 KPWAHEHAPIKSLLDAVK-AIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPT 475
+P + I L+D ++ +K L+G +G GKTFT + +A N KP + N T
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVN-KPTLVIAHNKT 68
Query: 476 SQSECTAE 483
+ +E
Sbjct: 69 LAGQLYSE 76
>pdb|2E9E|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2E9E|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2OJV|A Chain A, Crystal Structure Of A Ternary Complex Of Goat
Lactoperoxidase With Cyanide And Iodide Ions At 2.4 A
Resolution
pdb|2EFB|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EFB|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EHA|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
pdb|2EHA|B Chain B, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
Length = 595
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 553 VTQEHFDKGLIYPPFTNIR 571
V QE +D GL YPPF N++
Sbjct: 215 VNQEAWDHGLAYPPFNNVK 233
>pdb|2R5L|A Chain A, Crystal Structure Of Lactoperoxidase At 2.4a Resolution
pdb|3N8F|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3N8F|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3NIU|A Chain A, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NIU|B Chain B, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NAK|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3NAK|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3QF1|A Chain A, Crystal Structure Of The Complex Of Caprine
Lactoperoxidase With Diethylenediamine At 2.6a
Resolution
pdb|3RKE|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With A
Tightly Bound Inhibitor, 4-Aminophenyl-4h-Imidazole-1-Yl
Methanone At 2.3 A Resolution
pdb|3R55|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Pyrazinamide At 2.1 A Resolution
pdb|3SXV|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Amitrole At 2.1 A Resolution
Length = 595
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 553 VTQEHFDKGLIYPPFTNIR 571
V QE +D GL YPPF N++
Sbjct: 215 VNQEAWDHGLAYPPFNNVK 233
>pdb|3R5Q|A Chain A, Crystal Structure Of Sheep Lactoperoxidase In Complex With
Tetrahydrofuran At 2.7 A Resolution
Length = 595
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 553 VTQEHFDKGLIYPPFTNIR 571
V QE +D GL YPPF N++
Sbjct: 215 VNQEAWDHGLAYPPFNNMK 233
>pdb|2IKC|A Chain A, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
pdb|2IKC|B Chain B, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
Length = 595
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 553 VTQEHFDKGLIYPPFTNIR 571
V QE +D GL YPPF N++
Sbjct: 215 VNQEAWDHGLAYPPFNNMK 233
>pdb|4GW9|A Chain A, Structure Of A Bacteriophytochrome And Light-Stimulated
Protomer Swapping With A Gene Repressor
pdb|4GW9|B Chain B, Structure Of A Bacteriophytochrome And Light-Stimulated
Protomer Swapping With A Gene Repressor
pdb|4GW9|C Chain C, Structure Of A Bacteriophytochrome And Light-Stimulated
Protomer Swapping With A Gene Repressor
pdb|4GW9|D Chain D, Structure Of A Bacteriophytochrome And Light-Stimulated
Protomer Swapping With A Gene Repressor
Length = 655
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 333 IQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEAR 392
++GT+ A L+A + +G T+AD F + LIA E +Q + + +
Sbjct: 496 VEGTSDPWTAADLAAARTIGQTVADIVLQF-------RAVRTLIAREQYEQFSSQVHASX 548
Query: 393 KKIWLVDSKGLIV 405
+ + + D++G I+
Sbjct: 549 QPVLITDAEGRIL 561
>pdb|1P2Z|A Chain A, Refinement Of Adenovirus Type 2 Hexon With Cns
Length = 967
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 137 AMMDLQERNERLFYKLLIDNV 157
A++DLQ+RN L Y+LL+D++
Sbjct: 368 AVVDLQDRNTELSYQLLLDSI 388
>pdb|3IYN|A Chain A, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|B Chain B, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|C Chain C, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|D Chain D, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|E Chain E, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|F Chain F, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|G Chain G, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|H Chain H, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|I Chain I, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|J Chain J, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|K Chain K, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|L Chain L, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|1VSZ|A Chain A, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|B Chain B, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|C Chain C, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|D Chain D, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|E Chain E, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|F Chain F, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|G Chain G, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|H Chain H, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|I Chain I, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|J Chain J, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|K Chain K, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|L Chain L, Crystal Structure Of Human Adenovirus At 3.5a
Length = 952
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 137 AMMDLQERNERLFYKLLIDNV 157
A++DLQ+RN L Y+LL+D++
Sbjct: 357 AVVDLQDRNTELSYQLLLDSI 377
>pdb|2BVI|F Chain F, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|G Chain G, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|H Chain H, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|I Chain I, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|J Chain J, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|K Chain K, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|L Chain L, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|M Chain M, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|N Chain N, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|O Chain O, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|P Chain P, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|Q Chain Q, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|1P30|A Chain A, Refinement Of Adenovirus Type 5 Hexon With Cns
pdb|3TG7|A Chain A, Crystal Structure Of Adenovirus Serotype 5 Hexon At 1.6a
Resolution
Length = 951
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 137 AMMDLQERNERLFYKLLIDNV 157
A++DLQ+RN L Y+LL+D++
Sbjct: 356 AVVDLQDRNTELSYQLLLDSI 376
>pdb|2OQY|A Chain A, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|B Chain B, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|C Chain C, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|D Chain D, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|E Chain E, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|F Chain F, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|G Chain G, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|H Chain H, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|3ES7|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES7|B Chain B, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|B Chain B, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|C Chain C, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|D Chain D, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|E Chain E, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|F Chain F, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|G Chain G, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|H Chain H, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3FYY|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg
pdb|3FYY|B Chain B, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg
pdb|3GD6|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Phosphate
Length = 391
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
Query: 289 QEFMTAVKQNYGEKVLIQFEDFAN-------HNAFELLSKYS 323
+EF++ VK+ +G +V I+ DF++ H A + L+KY
Sbjct: 173 EEFLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRLTKYD 214
>pdb|3HPF|A Chain A, Crystal Structure Of The Mutant Y90f Of Divergent
Galactarate Dehydratase From Oceanobacillus Iheyensis
Complexed With Mg And Galactarate
pdb|3HPF|B Chain B, Crystal Structure Of The Mutant Y90f Of Divergent
Galactarate Dehydratase From Oceanobacillus Iheyensis
Complexed With Mg And Galactarate
Length = 391
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
Query: 289 QEFMTAVKQNYGEKVLIQFEDFAN-------HNAFELLSKYS 323
+EF++ VK+ +G +V I+ DF++ H A + L+KY
Sbjct: 173 EEFLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRLTKYD 214
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,449,579
Number of Sequences: 62578
Number of extensions: 657699
Number of successful extensions: 1583
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1523
Number of HSP's gapped (non-prelim): 40
length of query: 617
length of database: 14,973,337
effective HSP length: 105
effective length of query: 512
effective length of database: 8,402,647
effective search space: 4302155264
effective search space used: 4302155264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)