Query 007112
Match_columns 617
No_of_seqs 253 out of 1371
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 19:05:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007112.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007112hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257 NADP+-dependent malic 100.0 4E-225 8E-230 1780.4 49.7 561 55-616 7-568 (582)
2 PRK13529 malate dehydrogenase; 100.0 2E-212 4E-217 1716.3 52.5 540 74-617 13-561 (563)
3 PLN03129 NADP-dependent malic 100.0 9E-212 2E-216 1715.3 53.6 543 75-617 39-581 (581)
4 PTZ00317 NADP-dependent malic 100.0 5E-210 1E-214 1695.6 52.6 539 72-612 13-559 (559)
5 COG0281 SfcA Malic enzyme [Ene 100.0 2E-118 4E-123 945.5 34.5 427 111-617 1-432 (432)
6 PRK12861 malic enzyme; Reviewe 100.0 7E-111 2E-115 947.6 34.8 370 158-606 34-420 (764)
7 PRK12862 malic enzyme; Reviewe 100.0 5E-110 1E-114 945.2 35.0 369 158-606 38-424 (763)
8 PRK07232 bifunctional malic en 100.0 1E-108 3E-113 929.3 35.3 358 158-593 30-405 (752)
9 cd05312 NAD_bind_1_malic_enz N 100.0 1.2E-99 3E-104 774.8 30.0 277 333-611 1-279 (279)
10 PF03949 Malic_M: Malic enzyme 100.0 1.5E-96 3E-101 744.0 20.1 252 333-586 1-255 (255)
11 cd00762 NAD_bind_malic_enz NAD 100.0 1.2E-93 2.6E-98 722.2 26.0 251 333-585 1-254 (254)
12 PF00390 malic: Malic enzyme, 100.0 1.9E-84 4.2E-89 626.7 9.2 182 142-323 1-182 (182)
13 cd05311 NAD_bind_2_malic_enz N 100.0 1.3E-58 2.8E-63 460.3 22.4 223 333-585 1-226 (226)
14 cd05191 NAD_bind_amino_acid_DH 98.9 2.9E-08 6.3E-13 85.0 11.6 86 335-472 1-86 (86)
15 PRK05476 S-adenosyl-L-homocyst 97.6 0.0051 1.1E-07 68.0 20.7 160 278-475 105-302 (425)
16 TIGR01035 hemA glutamyl-tRNA r 97.2 0.0015 3.2E-08 71.4 9.8 121 334-475 158-280 (417)
17 PRK09414 glutamate dehydrogena 97.1 0.027 5.7E-07 62.8 17.7 188 279-487 138-357 (445)
18 PLN02477 glutamate dehydrogena 97.0 0.017 3.6E-07 63.8 15.8 185 279-487 112-324 (410)
19 cd05213 NAD_bind_Glutamyl_tRNA 97.0 0.0044 9.6E-08 65.1 10.1 137 313-476 139-277 (311)
20 cd00401 AdoHcyase S-adenosyl-L 96.9 0.017 3.6E-07 63.8 14.4 129 325-487 163-302 (413)
21 cd05211 NAD_bind_Glu_Leu_Phe_V 96.9 0.012 2.7E-07 59.3 12.2 130 336-487 2-140 (217)
22 PRK00045 hemA glutamyl-tRNA re 96.9 0.0041 8.9E-08 68.1 9.3 120 335-475 161-283 (423)
23 TIGR00936 ahcY adenosylhomocys 96.8 0.017 3.8E-07 63.5 13.9 127 325-485 156-293 (406)
24 PRK14031 glutamate dehydrogena 96.8 0.051 1.1E-06 60.6 16.8 182 279-475 134-347 (444)
25 PRK14982 acyl-ACP reductase; P 96.7 0.012 2.6E-07 63.5 11.3 113 336-476 134-250 (340)
26 cd01080 NAD_bind_m-THF_DH_Cycl 96.7 0.014 3.1E-07 56.8 10.3 91 341-475 28-119 (168)
27 PLN02494 adenosylhomocysteinas 96.7 0.026 5.6E-07 63.4 13.6 131 325-488 215-355 (477)
28 PF01488 Shikimate_DH: Shikima 96.6 0.0028 6.1E-08 58.8 4.6 102 353-476 8-113 (135)
29 TIGR02853 spore_dpaA dipicolin 96.5 0.02 4.4E-07 59.9 11.3 138 334-500 128-265 (287)
30 PTZ00079 NADP-specific glutama 96.5 0.15 3.2E-06 57.1 18.4 181 279-476 143-358 (454)
31 PRK14030 glutamate dehydrogena 96.4 0.15 3.2E-06 57.0 17.3 189 279-487 134-357 (445)
32 PLN00203 glutamyl-tRNA reducta 96.2 0.018 3.9E-07 65.2 9.1 201 335-588 243-455 (519)
33 COG0373 HemA Glutamyl-tRNA red 96.1 0.022 4.9E-07 62.8 9.2 213 313-589 139-361 (414)
34 PRK08306 dipicolinate synthase 96.1 0.053 1.2E-06 56.9 11.3 128 339-500 134-266 (296)
35 PRK14192 bifunctional 5,10-met 95.9 0.045 9.8E-07 57.5 9.9 97 335-475 137-235 (283)
36 PTZ00075 Adenosylhomocysteinas 95.9 0.14 3.1E-06 57.6 14.0 122 325-474 215-343 (476)
37 cd01076 NAD_bind_1_Glu_DH NAD( 95.7 0.087 1.9E-06 53.6 10.8 123 334-475 8-140 (227)
38 PRK08293 3-hydroxybutyryl-CoA 95.6 0.32 7E-06 50.3 14.8 191 358-604 4-221 (287)
39 PRK13940 glutamyl-tRNA reducta 95.6 0.042 9E-07 60.6 8.6 192 338-588 163-359 (414)
40 cd05313 NAD_bind_2_Glu_DH NAD( 95.5 0.26 5.7E-06 51.3 13.7 125 335-476 16-159 (254)
41 PRK14175 bifunctional 5,10-met 95.5 0.05 1.1E-06 57.5 8.5 95 335-473 136-231 (286)
42 PRK12549 shikimate 5-dehydroge 95.5 0.047 1E-06 57.1 8.0 90 342-448 112-203 (284)
43 cd01075 NAD_bind_Leu_Phe_Val_D 95.4 0.11 2.3E-06 51.6 10.1 123 335-487 4-129 (200)
44 cd01078 NAD_bind_H4MPT_DH NADP 95.4 0.089 1.9E-06 51.1 9.2 54 336-401 7-61 (194)
45 PLN00106 malate dehydrogenase 95.4 0.089 1.9E-06 56.3 9.8 118 342-475 4-138 (323)
46 cd01065 NAD_bind_Shikimate_DH 95.2 0.07 1.5E-06 49.2 7.4 108 342-475 4-120 (155)
47 TIGR00518 alaDH alanine dehydr 94.5 0.13 2.8E-06 55.8 8.4 95 355-473 165-268 (370)
48 PRK00676 hemA glutamyl-tRNA re 94.5 0.2 4.4E-06 54.2 9.7 91 353-476 170-265 (338)
49 TIGR01809 Shik-DH-AROM shikima 94.4 0.095 2E-06 54.6 6.9 101 326-454 100-207 (282)
50 PF00670 AdoHcyase_NAD: S-aden 94.2 0.34 7.3E-06 47.5 9.7 121 334-487 3-123 (162)
51 PF03807 F420_oxidored: NADP o 94.1 0.096 2.1E-06 44.8 5.1 94 359-474 1-96 (96)
52 PRK10792 bifunctional 5,10-met 93.8 0.61 1.3E-05 49.5 11.3 93 336-472 138-231 (285)
53 PF00208 ELFV_dehydrog: Glutam 93.6 0.16 3.4E-06 52.3 6.6 129 333-475 7-151 (244)
54 cd05212 NAD_bind_m-THF_DH_Cycl 93.4 0.7 1.5E-05 44.0 10.0 83 338-457 9-91 (140)
55 cd05296 GH4_P_beta_glucosidase 93.2 0.2 4.3E-06 55.5 6.9 126 358-498 1-166 (419)
56 PRK05086 malate dehydrogenase; 93.1 0.5 1.1E-05 50.2 9.5 105 358-475 1-121 (312)
57 PRK08328 hypothetical protein; 93.1 0.058 1.3E-06 54.7 2.4 120 319-476 7-131 (231)
58 PRK14191 bifunctional 5,10-met 93.1 0.39 8.4E-06 50.9 8.5 83 337-457 137-220 (285)
59 TIGR02356 adenyl_thiF thiazole 93.0 0.19 4.2E-06 49.8 5.9 38 353-401 17-54 (202)
60 cd00650 LDH_MDH_like NAD-depen 92.9 0.22 4.8E-06 50.9 6.3 126 360-499 1-145 (263)
61 TIGR02354 thiF_fam2 thiamine b 92.8 0.17 3.7E-06 50.4 5.3 108 353-480 17-127 (200)
62 PRK08605 D-lactate dehydrogena 92.8 1.9 4.1E-05 46.1 13.4 153 289-473 59-237 (332)
63 PRK09424 pntA NAD(P) transhydr 92.8 0.43 9.3E-06 54.3 8.9 182 264-482 82-296 (509)
64 PRK06130 3-hydroxybutyryl-CoA 92.5 4.9 0.00011 41.9 15.8 121 358-504 5-142 (311)
65 PF00056 Ldh_1_N: lactate/mala 92.4 0.07 1.5E-06 50.2 1.8 104 359-475 2-121 (141)
66 PRK12749 quinate/shikimate deh 92.2 0.32 6.9E-06 51.2 6.5 49 342-401 109-157 (288)
67 cd05291 HicDH_like L-2-hydroxy 92.1 0.48 1E-05 49.7 7.8 126 359-500 2-144 (306)
68 PRK07531 bifunctional 3-hydrox 91.8 2.8 6.1E-05 47.2 13.8 123 358-505 5-144 (495)
69 PLN02928 oxidoreductase family 91.6 2.3 5E-05 45.9 12.4 140 334-496 120-284 (347)
70 PRK08223 hypothetical protein; 91.6 0.37 8.1E-06 51.1 6.3 57 316-401 4-60 (287)
71 PTZ00325 malate dehydrogenase; 91.5 0.95 2.1E-05 48.6 9.2 106 355-475 6-128 (321)
72 PRK05600 thiamine biosynthesis 91.4 0.54 1.2E-05 51.2 7.4 118 319-470 19-162 (370)
73 PRK12548 shikimate 5-dehydroge 91.4 0.55 1.2E-05 49.1 7.3 58 325-401 102-159 (289)
74 PRK14027 quinate/shikimate deh 91.4 0.43 9.2E-06 50.2 6.4 57 326-401 104-160 (283)
75 PRK00257 erythronate-4-phospha 91.2 1.8 3.8E-05 47.7 11.2 157 336-533 95-263 (381)
76 PRK00066 ldh L-lactate dehydro 91.2 0.47 1E-05 50.4 6.6 127 357-500 6-149 (315)
77 PTZ00082 L-lactate dehydrogena 91.2 0.81 1.8E-05 48.8 8.4 125 357-499 6-154 (321)
78 COG0578 GlpA Glycerol-3-phosph 91.1 1.3 2.7E-05 50.9 10.2 162 356-590 11-179 (532)
79 PRK09260 3-hydroxybutyryl-CoA 91.1 0.56 1.2E-05 48.5 6.9 126 358-505 2-145 (288)
80 PRK06129 3-hydroxyacyl-CoA deh 91.0 0.43 9.2E-06 50.0 6.0 32 358-401 3-34 (308)
81 cd01079 NAD_bind_m-THF_DH NAD 91.0 1.5 3.3E-05 44.3 9.6 103 338-457 34-147 (197)
82 PRK15076 alpha-galactosidase; 90.9 0.65 1.4E-05 51.6 7.6 129 358-502 2-174 (431)
83 PRK14619 NAD(P)H-dependent gly 90.5 2.4 5.1E-05 44.5 11.0 33 357-401 4-36 (308)
84 PTZ00117 malate dehydrogenase; 90.5 1.2 2.6E-05 47.4 8.9 126 356-499 4-148 (319)
85 PRK14189 bifunctional 5,10-met 90.5 1.1 2.4E-05 47.6 8.4 84 336-457 137-221 (285)
86 PRK12475 thiamine/molybdopteri 90.5 0.37 8E-06 51.9 5.0 39 353-402 20-58 (338)
87 PRK08762 molybdopterin biosynt 90.4 0.48 1E-05 51.3 5.9 37 354-401 132-168 (376)
88 PRK14194 bifunctional 5,10-met 90.4 1.2 2.6E-05 47.7 8.7 92 337-472 139-231 (301)
89 PRK00258 aroE shikimate 5-dehy 90.3 0.68 1.5E-05 48.0 6.7 88 341-448 106-196 (278)
90 cd05297 GH4_alpha_glucosidase_ 90.3 0.75 1.6E-05 50.8 7.3 127 359-501 2-171 (423)
91 PRK15438 erythronate-4-phospha 89.9 3 6.5E-05 45.9 11.5 117 334-486 93-217 (378)
92 PRK14176 bifunctional 5,10-met 89.8 1.4 3.1E-05 46.8 8.6 84 336-457 143-227 (287)
93 PRK14178 bifunctional 5,10-met 89.8 1 2.2E-05 47.7 7.5 84 335-456 130-214 (279)
94 cd05197 GH4_glycoside_hydrolas 89.8 0.84 1.8E-05 50.7 7.3 125 358-498 1-166 (425)
95 PRK06035 3-hydroxyacyl-CoA deh 89.8 7.2 0.00016 40.4 13.7 32 358-401 4-35 (291)
96 COG0169 AroE Shikimate 5-dehyd 89.3 0.83 1.8E-05 48.3 6.5 85 343-448 110-201 (283)
97 PF00899 ThiF: ThiF family; I 89.2 0.66 1.4E-05 42.6 5.1 35 356-401 1-35 (135)
98 PRK06223 malate dehydrogenase; 89.2 0.92 2E-05 47.3 6.7 120 358-502 3-148 (307)
99 cd00704 MDH Malate dehydrogena 89.0 1.6 3.4E-05 46.8 8.4 110 359-475 2-129 (323)
100 PRK04346 tryptophan synthase s 89.0 12 0.00026 41.5 15.4 95 251-378 23-128 (397)
101 TIGR02992 ectoine_eutC ectoine 88.9 2.1 4.5E-05 45.6 9.1 115 343-484 117-237 (326)
102 PF02826 2-Hacid_dh_C: D-isome 88.6 1.7 3.7E-05 42.0 7.7 115 348-494 27-147 (178)
103 PF01210 NAD_Gly3P_dh_N: NAD-d 88.5 0.48 1E-05 44.9 3.7 85 359-463 1-93 (157)
104 cd00755 YgdL_like Family of ac 88.4 0.7 1.5E-05 47.3 5.1 123 354-498 8-134 (231)
105 PRK07688 thiamine/molybdopteri 88.2 0.63 1.4E-05 50.1 4.8 38 353-401 20-57 (339)
106 TIGR00561 pntA NAD(P) transhyd 87.5 1.3 2.7E-05 50.7 6.8 167 263-461 80-276 (511)
107 cd05298 GH4_GlvA_pagL_like Gly 87.4 1.4 3E-05 49.2 7.0 130 358-502 1-171 (437)
108 PRK14851 hypothetical protein; 87.3 2.4 5.2E-05 50.0 9.1 138 320-491 24-194 (679)
109 PF02056 Glyco_hydro_4: Family 87.2 1.2 2.6E-05 44.4 5.7 109 359-481 1-151 (183)
110 cd01336 MDH_cytoplasmic_cytoso 86.9 3.9 8.5E-05 43.8 9.8 134 359-502 4-157 (325)
111 PRK14184 bifunctional 5,10-met 86.6 2.3 5.1E-05 45.2 7.8 88 336-457 136-224 (286)
112 TIGR01763 MalateDH_bact malate 86.6 1.5 3.3E-05 46.4 6.5 124 358-499 2-144 (305)
113 COG0111 SerA Phosphoglycerate 86.5 5.4 0.00012 42.9 10.6 110 326-460 90-224 (324)
114 PRK14183 bifunctional 5,10-met 86.5 3 6.5E-05 44.3 8.5 85 335-457 135-220 (281)
115 TIGR01915 npdG NADPH-dependent 86.3 3.4 7.3E-05 41.2 8.4 96 359-477 2-106 (219)
116 PRK08374 homoserine dehydrogen 86.3 3.4 7.4E-05 44.4 9.0 106 358-470 3-121 (336)
117 PRK14190 bifunctional 5,10-met 86.2 3 6.5E-05 44.3 8.4 84 336-457 137-221 (284)
118 COG0334 GdhA Glutamate dehydro 86.0 22 0.00048 39.8 15.2 188 277-487 110-325 (411)
119 PRK07634 pyrroline-5-carboxyla 86.0 2.1 4.5E-05 42.7 6.7 118 356-498 3-121 (245)
120 cd01337 MDH_glyoxysomal_mitoch 85.9 4.4 9.5E-05 43.4 9.5 102 359-475 2-120 (310)
121 TIGR01758 MDH_euk_cyt malate d 85.9 4.8 0.0001 43.2 9.8 136 359-504 1-156 (324)
122 PRK14179 bifunctional 5,10-met 85.9 3.1 6.8E-05 44.2 8.3 83 336-456 137-220 (284)
123 PRK12550 shikimate 5-dehydroge 85.8 1.8 3.9E-05 45.3 6.4 48 342-401 108-155 (272)
124 TIGR00872 gnd_rel 6-phosphoglu 85.7 2.7 5.9E-05 43.9 7.8 99 359-483 2-102 (298)
125 PRK08644 thiamine biosynthesis 85.1 0.95 2.1E-05 45.5 3.9 104 353-476 24-130 (212)
126 PLN02306 hydroxypyruvate reduc 85.1 7.3 0.00016 43.0 10.9 196 323-554 107-345 (386)
127 PRK14174 bifunctional 5,10-met 85.1 3.3 7.2E-05 44.2 8.1 87 337-457 139-226 (295)
128 PRK11880 pyrroline-5-carboxyla 85.0 3.6 7.9E-05 41.7 8.1 120 358-505 3-122 (267)
129 PF01262 AlaDh_PNT_C: Alanine 84.8 0.36 7.8E-06 46.3 0.7 89 355-460 18-130 (168)
130 PRK14106 murD UDP-N-acetylmura 84.6 3.6 7.8E-05 44.9 8.4 112 354-499 2-116 (450)
131 PRK14177 bifunctional 5,10-met 84.6 3.9 8.5E-05 43.5 8.3 83 337-457 139-222 (284)
132 PF02882 THF_DHG_CYH_C: Tetrah 84.6 4 8.7E-05 39.9 7.7 84 336-457 15-99 (160)
133 TIGR01772 MDH_euk_gproteo mala 84.1 6.2 0.00014 42.2 9.7 127 359-502 1-148 (312)
134 PRK14188 bifunctional 5,10-met 83.9 3.9 8.4E-05 43.7 7.9 81 337-455 138-219 (296)
135 cd00757 ThiF_MoeB_HesA_family 83.8 1.3 2.8E-05 44.6 4.2 104 353-475 17-123 (228)
136 PRK01710 murD UDP-N-acetylmura 83.8 6.2 0.00014 43.7 9.9 116 355-511 12-130 (458)
137 PRK14172 bifunctional 5,10-met 83.7 4.6 0.0001 42.8 8.4 83 337-457 138-221 (278)
138 PRK13243 glyoxylate reductase; 83.7 13 0.00029 39.9 11.9 139 352-527 145-291 (333)
139 PRK08291 ectoine utilization p 83.4 4.7 0.0001 43.0 8.4 116 342-484 119-240 (330)
140 cd01339 LDH-like_MDH L-lactate 83.2 2.6 5.7E-05 44.1 6.3 118 360-500 1-142 (300)
141 TIGR02355 moeB molybdopterin s 83.0 1.4 3.1E-05 45.2 4.2 104 353-476 20-127 (240)
142 cd01338 MDH_choloroplast_like 82.6 7.2 0.00016 41.9 9.4 111 358-475 3-131 (322)
143 TIGR02279 PaaC-3OHAcCoADH 3-hy 82.5 12 0.00027 42.5 11.7 36 512-547 186-221 (503)
144 PRK00094 gpsA NAD(P)H-dependen 82.5 2.7 5.8E-05 43.5 6.0 98 359-476 3-109 (325)
145 PLN02516 methylenetetrahydrofo 81.9 5.7 0.00012 42.6 8.3 85 335-457 145-230 (299)
146 PRK07530 3-hydroxybutyryl-CoA 81.9 8.5 0.00018 39.9 9.4 32 358-401 5-36 (292)
147 PRK07066 3-hydroxybutyryl-CoA 81.9 4.3 9.2E-05 43.7 7.4 31 358-400 8-38 (321)
148 PRK14171 bifunctional 5,10-met 81.8 5.9 0.00013 42.3 8.3 86 334-457 136-222 (288)
149 TIGR01759 MalateDH-SF1 malate 81.6 7.8 0.00017 41.7 9.3 122 358-489 4-143 (323)
150 PRK15116 sulfur acceptor prote 81.4 4.7 0.0001 42.4 7.4 108 353-478 26-136 (268)
151 PRK12921 2-dehydropantoate 2-r 81.4 3.8 8.3E-05 42.1 6.6 100 359-476 2-106 (305)
152 PRK14618 NAD(P)H-dependent gly 81.3 2.9 6.2E-05 44.0 5.8 32 358-401 5-36 (328)
153 PRK07878 molybdopterin biosynt 81.3 1.1 2.4E-05 49.0 2.8 38 353-401 38-75 (392)
154 PRK10886 DnaA initiator-associ 81.2 6.8 0.00015 39.3 8.1 148 355-554 39-187 (196)
155 cd01485 E1-1_like Ubiquitin ac 81.2 1.4 3.1E-05 43.7 3.4 74 353-443 15-94 (198)
156 PRK06436 glycerate dehydrogena 81.0 23 0.0005 37.8 12.4 109 335-475 84-212 (303)
157 TIGR00507 aroE shikimate 5-deh 80.7 3.8 8.3E-05 42.2 6.4 57 325-401 93-149 (270)
158 PRK07574 formate dehydrogenase 80.5 11 0.00024 41.7 10.1 116 352-498 187-308 (385)
159 TIGR01408 Ube1 ubiquitin-activ 80.5 0.77 1.7E-05 56.2 1.4 124 288-442 358-496 (1008)
160 PRK12480 D-lactate dehydrogena 80.4 14 0.0003 39.8 10.6 119 324-473 91-235 (330)
161 PRK14193 bifunctional 5,10-met 80.4 7.4 0.00016 41.4 8.5 85 337-457 138-223 (284)
162 cd05290 LDH_3 A subgroup of L- 80.4 4.6 9.9E-05 43.0 7.0 102 359-475 1-122 (307)
163 PRK14187 bifunctional 5,10-met 80.3 8 0.00017 41.4 8.7 85 335-457 138-223 (294)
164 PRK05690 molybdopterin biosynt 80.3 2.3 4.9E-05 43.7 4.5 38 353-401 28-65 (245)
165 PRK06522 2-dehydropantoate 2-r 80.1 5.5 0.00012 40.7 7.3 100 359-475 2-103 (304)
166 PRK14166 bifunctional 5,10-met 80.1 8 0.00017 41.2 8.6 85 335-457 135-220 (282)
167 cd01487 E1_ThiF_like E1_ThiF_l 80.0 2.4 5.1E-05 41.3 4.3 32 359-401 1-32 (174)
168 COG0686 Ald Alanine dehydrogen 80.0 2.7 5.8E-05 45.7 5.0 109 355-484 166-290 (371)
169 PTZ00345 glycerol-3-phosphate 79.9 6.9 0.00015 42.9 8.3 24 356-379 10-33 (365)
170 PRK09310 aroDE bifunctional 3- 79.7 3.7 8.1E-05 46.2 6.3 48 342-401 317-364 (477)
171 PRK15469 ghrA bifunctional gly 79.7 17 0.00037 38.8 10.9 179 335-554 98-298 (312)
172 cd01483 E1_enzyme_family Super 79.6 2.6 5.6E-05 38.9 4.3 94 359-474 1-99 (143)
173 PRK06476 pyrroline-5-carboxyla 79.6 25 0.00055 35.7 11.8 95 359-475 2-96 (258)
174 PRK02472 murD UDP-N-acetylmura 79.5 6.2 0.00013 43.1 7.8 114 355-499 3-116 (447)
175 PRK05442 malate dehydrogenase; 79.4 12 0.00026 40.3 9.8 121 359-489 6-144 (326)
176 PRK05808 3-hydroxybutyryl-CoA 79.1 17 0.00037 37.5 10.4 32 358-401 4-35 (282)
177 PRK14168 bifunctional 5,10-met 79.1 9.1 0.0002 41.1 8.6 89 335-457 139-228 (297)
178 PRK09599 6-phosphogluconate de 79.0 12 0.00027 39.0 9.6 93 359-475 2-97 (301)
179 PRK08410 2-hydroxyacid dehydro 78.8 19 0.00041 38.4 11.0 135 324-494 85-252 (311)
180 cd01492 Aos1_SUMO Ubiquitin ac 78.7 1.8 3.8E-05 43.1 3.1 77 353-446 17-97 (197)
181 PRK08268 3-hydroxy-acyl-CoA de 78.5 7.4 0.00016 44.2 8.3 98 435-546 111-222 (507)
182 PRK14170 bifunctional 5,10-met 78.3 10 0.00022 40.5 8.6 85 335-457 135-220 (284)
183 PRK15317 alkyl hydroperoxide r 78.2 3.3 7.1E-05 46.6 5.3 85 305-401 148-243 (517)
184 cd05293 LDH_1 A subgroup of L- 78.1 6.6 0.00014 41.9 7.3 126 358-500 4-147 (312)
185 PRK07679 pyrroline-5-carboxyla 78.0 36 0.00077 35.2 12.5 98 357-475 3-102 (279)
186 TIGR01381 E1_like_apg7 E1-like 77.9 2.2 4.7E-05 50.1 3.9 40 353-403 334-373 (664)
187 PRK06141 ornithine cyclodeamin 77.8 16 0.00035 38.7 10.1 104 356-484 124-232 (314)
188 TIGR03140 AhpF alkyl hydropero 77.6 3.6 7.7E-05 46.3 5.4 83 293-378 140-233 (515)
189 PF07992 Pyr_redox_2: Pyridine 76.8 4.4 9.5E-05 38.3 5.0 32 359-402 1-32 (201)
190 PRK07231 fabG 3-ketoacyl-(acyl 76.8 6.2 0.00014 38.4 6.2 75 354-447 2-91 (251)
191 PLN03139 formate dehydrogenase 76.7 24 0.00051 39.1 11.3 141 352-526 194-342 (386)
192 PRK07680 late competence prote 76.4 6.3 0.00014 40.5 6.4 98 359-476 2-100 (273)
193 PRK00141 murD UDP-N-acetylmura 76.4 11 0.00024 42.1 8.7 119 354-512 12-135 (473)
194 PRK05597 molybdopterin biosynt 75.8 3.3 7.1E-05 44.9 4.3 38 353-401 24-61 (355)
195 TIGR01327 PGDH D-3-phosphoglyc 75.4 23 0.0005 40.4 11.1 196 324-556 84-304 (525)
196 PRK06487 glycerate dehydrogena 75.0 69 0.0015 34.3 13.9 187 324-554 88-309 (317)
197 PRK09880 L-idonate 5-dehydroge 75.0 35 0.00076 35.8 11.6 45 345-401 159-203 (343)
198 PRK06153 hypothetical protein; 74.8 4 8.6E-05 45.3 4.7 164 281-476 110-279 (393)
199 PRK13581 D-3-phosphoglycerate 74.6 56 0.0012 37.4 13.9 195 324-556 86-305 (526)
200 PRK12490 6-phosphogluconate de 74.4 16 0.00036 38.2 9.0 93 359-475 2-97 (299)
201 KOG0685 Flavin-containing amin 74.3 1.5 3.3E-05 49.6 1.4 26 353-378 17-42 (498)
202 PRK14185 bifunctional 5,10-met 74.2 15 0.00032 39.5 8.5 87 337-457 137-224 (293)
203 cd05294 LDH-like_MDH_nadp A la 74.1 16 0.00034 38.8 8.8 120 359-499 2-147 (309)
204 PRK14169 bifunctional 5,10-met 73.7 16 0.00035 38.9 8.7 85 335-457 134-219 (282)
205 PRK14180 bifunctional 5,10-met 73.6 15 0.00033 39.1 8.5 86 334-457 135-221 (282)
206 PRK14182 bifunctional 5,10-met 73.6 17 0.00036 38.8 8.8 83 337-457 137-220 (282)
207 COG0345 ProC Pyrroline-5-carbo 73.6 19 0.00041 38.1 9.1 105 358-489 2-107 (266)
208 KOG0029 Amine oxidase [Seconda 73.5 1.8 3.9E-05 49.2 1.7 37 355-394 13-49 (501)
209 TIGR02622 CDP_4_6_dhtase CDP-g 73.3 10 0.00022 39.9 7.1 106 355-472 2-127 (349)
210 TIGR03366 HpnZ_proposed putati 73.0 24 0.00052 35.9 9.6 47 342-400 107-153 (280)
211 PLN02616 tetrahydrofolate dehy 72.6 15 0.00032 40.6 8.3 83 337-457 211-294 (364)
212 COG1486 CelF Alpha-galactosida 72.5 4.3 9.3E-05 45.7 4.3 125 356-495 2-167 (442)
213 PRK06270 homoserine dehydrogen 72.3 28 0.00061 37.5 10.3 105 358-470 3-124 (341)
214 PF01113 DapB_N: Dihydrodipico 72.1 8.3 0.00018 35.4 5.4 95 359-470 2-97 (124)
215 PRK14167 bifunctional 5,10-met 71.8 18 0.00039 38.8 8.6 87 337-457 137-224 (297)
216 PRK06932 glycerate dehydrogena 71.8 32 0.00069 36.8 10.5 138 353-527 143-289 (314)
217 PRK14173 bifunctional 5,10-met 71.7 18 0.0004 38.6 8.6 84 336-457 134-218 (287)
218 cd05292 LDH_2 A subgroup of L- 71.6 12 0.00026 39.6 7.2 126 359-501 2-144 (308)
219 PRK08229 2-dehydropantoate 2-r 71.5 8 0.00017 40.6 5.9 103 358-477 3-112 (341)
220 PRK07411 hypothetical protein; 71.5 4.1 8.9E-05 44.7 3.9 38 353-401 34-71 (390)
221 KOG0069 Glyoxylate/hydroxypyru 71.2 20 0.00042 39.3 8.8 100 335-460 120-244 (336)
222 PLN02819 lysine-ketoglutarate 70.8 19 0.00041 44.7 9.6 115 342-461 179-326 (1042)
223 PRK02842 light-independent pro 70.7 21 0.00045 39.5 9.1 87 344-445 277-368 (427)
224 PF03447 NAD_binding_3: Homose 70.5 7.4 0.00016 34.7 4.7 88 364-469 1-88 (117)
225 PLN02527 aspartate carbamoyltr 70.3 1.5E+02 0.0032 31.9 15.0 130 296-447 93-228 (306)
226 COG1250 FadB 3-hydroxyacyl-CoA 70.3 1.1E+02 0.0023 33.2 14.0 140 429-587 101-249 (307)
227 PF00070 Pyr_redox: Pyridine n 70.2 9.4 0.0002 31.8 5.0 35 359-405 1-35 (80)
228 PTZ00142 6-phosphogluconate de 70.1 9.3 0.0002 43.2 6.3 96 359-474 3-103 (470)
229 TIGR02371 ala_DH_arch alanine 69.9 32 0.0007 36.8 10.0 104 356-484 127-235 (325)
230 PRK07340 ornithine cyclodeamin 69.8 37 0.00081 36.0 10.4 104 355-484 123-230 (304)
231 PRK14186 bifunctional 5,10-met 69.8 22 0.00047 38.2 8.7 83 337-457 138-221 (297)
232 PLN02520 bifunctional 3-dehydr 69.8 9.4 0.0002 43.7 6.3 38 352-401 374-411 (529)
233 PLN02545 3-hydroxybutyryl-CoA 69.7 35 0.00075 35.4 10.0 32 358-401 5-36 (295)
234 PF02423 OCD_Mu_crystall: Orni 69.6 9.2 0.0002 40.6 5.9 103 357-484 128-237 (313)
235 PLN02602 lactate dehydrogenase 69.5 16 0.00035 39.8 7.8 124 358-500 38-181 (350)
236 PRK15409 bifunctional glyoxyla 69.3 47 0.001 35.7 11.1 157 335-526 102-287 (323)
237 cd08237 ribitol-5-phosphate_DH 69.1 1.2E+02 0.0025 32.0 13.9 36 356-401 163-198 (341)
238 cd01484 E1-2_like Ubiquitin ac 69.0 6.4 0.00014 40.5 4.4 32 359-401 1-32 (234)
239 PRK12439 NAD(P)H-dependent gly 69.0 12 0.00025 40.2 6.5 22 357-378 7-28 (341)
240 KOG2337 Ubiquitin activating E 68.6 6 0.00013 45.5 4.4 165 355-532 338-522 (669)
241 cd01486 Apg7 Apg7 is an E1-lik 68.2 6.6 0.00014 42.3 4.4 68 359-442 1-73 (307)
242 cd01491 Ube1_repeat1 Ubiquitin 67.8 5 0.00011 42.6 3.4 38 353-401 15-52 (286)
243 TIGR00873 gnd 6-phosphoglucona 67.6 15 0.00032 41.5 7.3 95 359-473 1-99 (467)
244 PF02737 3HCDH_N: 3-hydroxyacy 67.4 8.1 0.00018 37.8 4.6 97 359-470 1-111 (180)
245 PRK13938 phosphoheptose isomer 67.2 20 0.00043 36.0 7.3 104 356-474 44-150 (196)
246 PRK11790 D-3-phosphoglycerate 67.2 1.2E+02 0.0026 33.7 14.1 194 323-557 96-320 (409)
247 PRK09754 phenylpropionate diox 66.7 8.1 0.00017 41.7 4.8 36 356-401 2-37 (396)
248 cd01488 Uba3_RUB Ubiquitin act 66.6 7.2 0.00016 41.6 4.3 32 359-401 1-32 (291)
249 PF13738 Pyr_redox_3: Pyridine 66.5 6.7 0.00014 37.3 3.7 30 361-401 1-30 (203)
250 PRK14181 bifunctional 5,10-met 66.4 25 0.00055 37.6 8.3 89 335-457 131-220 (287)
251 COG2423 Predicted ornithine cy 66.2 33 0.00072 37.3 9.3 121 340-487 115-241 (330)
252 PLN02897 tetrahydrofolate dehy 66.2 24 0.00053 38.7 8.3 83 337-457 194-277 (345)
253 PF01494 FAD_binding_3: FAD bi 66.0 8.1 0.00018 39.1 4.5 35 358-404 2-36 (356)
254 TIGR01214 rmlD dTDP-4-dehydror 66.0 25 0.00054 35.3 7.9 60 359-448 1-61 (287)
255 COG0190 FolD 5,10-methylene-te 65.8 18 0.00039 38.7 7.0 119 301-457 90-219 (283)
256 PRK14620 NAD(P)H-dependent gly 65.4 17 0.00037 38.2 6.8 31 359-401 2-32 (326)
257 COG0039 Mdh Malate/lactate deh 65.3 14 0.00029 40.1 6.1 108 358-488 1-126 (313)
258 PRK07502 cyclohexadienyl dehyd 64.8 25 0.00054 36.8 7.9 94 358-473 7-101 (307)
259 PF03446 NAD_binding_2: NAD bi 64.2 11 0.00024 35.8 4.7 102 358-487 2-107 (163)
260 TIGR01771 L-LDH-NAD L-lactate 64.2 15 0.00032 39.0 6.1 124 362-500 1-140 (299)
261 PLN02688 pyrroline-5-carboxyla 63.3 52 0.0011 33.3 9.7 94 359-475 2-98 (266)
262 PRK13803 bifunctional phosphor 63.3 2.1E+02 0.0046 33.6 15.7 109 431-551 426-556 (610)
263 PRK06407 ornithine cyclodeamin 62.7 25 0.00054 37.4 7.4 104 356-484 116-225 (301)
264 PRK15181 Vi polysaccharide bio 62.5 32 0.00068 36.4 8.2 105 351-472 9-141 (348)
265 COG1179 Dinucleotide-utilizing 62.4 7 0.00015 41.2 3.2 105 354-473 27-131 (263)
266 COG0240 GpsA Glycerol-3-phosph 62.2 16 0.00034 39.9 5.9 99 358-472 2-105 (329)
267 KOG1495 Lactate dehydrogenase 62.1 19 0.00042 38.7 6.4 130 353-505 16-169 (332)
268 cd01489 Uba2_SUMO Ubiquitin ac 62.0 11 0.00023 40.6 4.6 32 359-401 1-32 (312)
269 PRK12429 3-hydroxybutyrate deh 61.8 22 0.00048 34.8 6.5 35 355-401 2-37 (258)
270 PRK07877 hypothetical protein; 61.5 16 0.00035 43.6 6.4 101 353-472 103-229 (722)
271 COG1052 LdhA Lactate dehydroge 61.1 41 0.00089 36.4 8.8 165 350-553 139-312 (324)
272 PRK05866 short chain dehydroge 61.1 22 0.00047 36.8 6.6 39 352-401 35-73 (293)
273 PRK06046 alanine dehydrogenase 61.0 57 0.0012 34.9 9.8 103 356-484 128-236 (326)
274 PRK00536 speE spermidine synth 60.5 15 0.00032 38.7 5.2 101 358-501 74-175 (262)
275 PRK06823 ornithine cyclodeamin 59.8 69 0.0015 34.4 10.2 105 356-485 127-236 (315)
276 PRK01713 ornithine carbamoyltr 59.8 67 0.0015 34.9 10.2 130 297-445 99-233 (334)
277 PRK06718 precorrin-2 dehydroge 59.7 13 0.00028 37.1 4.5 35 354-400 7-41 (202)
278 TIGR01292 TRX_reduct thioredox 59.5 11 0.00024 37.7 4.0 31 359-401 2-32 (300)
279 PRK06719 precorrin-2 dehydroge 59.4 14 0.0003 35.6 4.5 36 354-401 10-45 (157)
280 PRK12570 N-acetylmuramic acid- 59.3 38 0.00082 36.1 8.1 37 437-475 127-165 (296)
281 TIGR03026 NDP-sugDHase nucleot 59.1 37 0.0008 37.2 8.2 31 359-401 2-32 (411)
282 TIGR01285 nifN nitrogenase mol 58.9 14 0.00031 41.0 5.1 84 345-446 299-382 (432)
283 PRK11730 fadB multifunctional 58.8 25 0.00053 41.8 7.3 107 431-546 413-527 (715)
284 PF05834 Lycopene_cycl: Lycope 58.8 12 0.00027 40.2 4.5 35 360-404 2-36 (374)
285 PRK08618 ornithine cyclodeamin 58.6 27 0.00058 37.3 6.9 105 356-487 126-236 (325)
286 PF03435 Saccharop_dh: Sacchar 58.4 4.7 0.0001 43.3 1.2 91 360-469 1-96 (386)
287 cd00300 LDH_like L-lactate deh 58.2 28 0.0006 36.8 6.9 123 360-499 1-141 (300)
288 COG1063 Tdh Threonine dehydrog 58.0 20 0.00042 38.6 5.8 98 331-447 143-248 (350)
289 PRK12828 short chain dehydroge 57.9 20 0.00043 34.5 5.3 36 354-401 4-40 (239)
290 TIGR03169 Nterm_to_SelD pyridi 57.9 7.3 0.00016 41.0 2.5 36 359-403 1-36 (364)
291 cd05006 SIS_GmhA Phosphoheptos 57.8 57 0.0012 31.3 8.4 22 437-460 101-122 (177)
292 TIGR03376 glycerol3P_DH glycer 57.8 21 0.00045 38.8 6.0 20 359-378 1-20 (342)
293 TIGR01283 nifE nitrogenase mol 57.6 26 0.00057 39.1 6.9 85 345-444 314-402 (456)
294 PRK12409 D-amino acid dehydrog 57.2 14 0.00029 39.7 4.4 33 358-402 2-34 (410)
295 cd00377 ICL_PEPM Members of th 57.2 2.4E+02 0.0052 29.1 16.5 44 451-498 183-226 (243)
296 TIGR02440 FadJ fatty oxidation 57.1 1.7E+02 0.0036 34.9 13.6 156 429-606 403-567 (699)
297 PRK11883 protoporphyrinogen ox 57.0 6.5 0.00014 42.2 2.0 22 358-379 1-22 (451)
298 TIGR01470 cysG_Nterm siroheme 56.8 15 0.00033 36.8 4.5 36 354-401 6-41 (205)
299 COG0499 SAM1 S-adenosylhomocys 56.8 48 0.001 37.1 8.4 126 330-489 185-315 (420)
300 PRK11199 tyrA bifunctional cho 56.5 59 0.0013 35.5 9.2 33 357-401 98-131 (374)
301 KOG2304 3-hydroxyacyl-CoA dehy 56.4 10 0.00022 39.9 3.1 32 358-401 12-43 (298)
302 PRK06249 2-dehydropantoate 2-r 56.4 31 0.00068 36.2 6.9 103 355-476 3-110 (313)
303 PLN00112 malate dehydrogenase 56.3 41 0.00089 38.1 8.1 133 358-500 101-253 (444)
304 PRK03803 murD UDP-N-acetylmura 56.2 50 0.0011 36.3 8.7 115 356-511 5-121 (448)
305 PRK05993 short chain dehydroge 55.9 28 0.0006 35.3 6.2 33 357-401 4-37 (277)
306 TIGR00465 ilvC ketol-acid redu 55.9 44 0.00096 35.9 8.0 24 355-378 1-24 (314)
307 PRK05441 murQ N-acetylmuramic 55.8 16 0.00034 38.9 4.6 39 436-476 130-170 (299)
308 TIGR00441 gmhA phosphoheptose 55.6 71 0.0015 30.3 8.5 37 437-475 79-117 (154)
309 TIGR01181 dTDP_gluc_dehyt dTDP 55.6 51 0.0011 33.1 8.0 78 359-448 1-84 (317)
310 TIGR02028 ChlP geranylgeranyl 55.6 13 0.00029 40.3 4.1 31 359-401 2-32 (398)
311 TIGR03693 ocin_ThiF_like putat 55.1 58 0.0012 38.6 9.2 64 317-403 101-164 (637)
312 PF13454 NAD_binding_9: FAD-NA 55.0 12 0.00025 35.4 3.1 36 361-403 1-36 (156)
313 PLN02240 UDP-glucose 4-epimera 55.0 29 0.00063 36.0 6.3 107 354-472 2-132 (352)
314 PRK06138 short chain dehydroge 54.5 30 0.00065 33.8 6.0 77 354-448 2-92 (252)
315 PRK13512 coenzyme A disulfide 54.4 13 0.00028 40.9 3.8 33 359-401 3-35 (438)
316 TIGR02023 BchP-ChlP geranylger 54.2 15 0.00033 39.4 4.2 31 359-401 2-32 (388)
317 PRK06928 pyrroline-5-carboxyla 54.1 32 0.00069 35.7 6.4 98 358-475 2-101 (277)
318 COG5322 Predicted dehydrogenas 53.8 18 0.0004 38.9 4.6 45 334-378 144-189 (351)
319 PRK05479 ketol-acid reductoiso 53.6 52 0.0011 35.9 8.1 25 354-378 14-38 (330)
320 PRK01438 murD UDP-N-acetylmura 53.6 20 0.00043 39.8 5.1 29 350-378 9-37 (480)
321 PRK03369 murD UDP-N-acetylmura 53.5 65 0.0014 36.3 9.2 89 355-468 10-98 (488)
322 PF01266 DAO: FAD dependent ox 52.9 20 0.00043 36.4 4.7 33 359-403 1-33 (358)
323 PRK13394 3-hydroxybutyrate deh 52.7 50 0.0011 32.4 7.3 76 354-448 4-95 (262)
324 PRK06184 hypothetical protein; 52.7 18 0.00038 40.4 4.5 35 356-402 2-36 (502)
325 PRK12771 putative glutamate sy 52.5 27 0.00058 39.9 6.0 36 354-401 134-169 (564)
326 PRK12829 short chain dehydroge 52.3 35 0.00075 33.6 6.1 37 354-401 8-44 (264)
327 PRK00683 murD UDP-N-acetylmura 52.0 67 0.0015 35.2 8.8 114 356-511 2-115 (418)
328 PRK07236 hypothetical protein; 52.0 21 0.00045 38.1 4.8 24 355-378 4-27 (386)
329 cd05007 SIS_Etherase N-acetylm 51.9 27 0.00059 36.2 5.5 38 436-475 117-156 (257)
330 PRK07819 3-hydroxybutyryl-CoA 51.8 19 0.00041 37.7 4.4 22 358-379 6-27 (286)
331 PF01408 GFO_IDH_MocA: Oxidore 51.3 29 0.00062 30.5 4.8 90 359-469 2-91 (120)
332 PRK06182 short chain dehydroge 51.0 28 0.0006 35.0 5.3 78 356-448 2-85 (273)
333 PRK06847 hypothetical protein; 50.7 20 0.00044 37.6 4.5 22 357-378 4-25 (375)
334 TIGR01316 gltA glutamate synth 50.7 22 0.00048 39.4 4.9 36 354-401 130-165 (449)
335 TIGR01505 tartro_sem_red 2-hyd 50.3 57 0.0012 33.8 7.5 31 359-401 1-31 (291)
336 PRK04965 NADH:flavorubredoxin 50.1 16 0.00035 39.0 3.6 35 358-402 3-37 (377)
337 PLN02695 GDP-D-mannose-3',5'-e 50.1 51 0.0011 35.4 7.4 97 356-472 20-137 (370)
338 PRK07233 hypothetical protein; 50.0 18 0.00038 38.5 3.9 31 359-401 1-31 (434)
339 TIGR01082 murC UDP-N-acetylmur 50.0 29 0.00063 38.3 5.7 111 359-512 1-113 (448)
340 PRK09564 coenzyme A disulfide 49.4 17 0.00038 39.4 3.8 37 358-404 1-37 (444)
341 PRK09126 hypothetical protein; 49.4 20 0.00044 37.9 4.2 22 357-378 3-24 (392)
342 TIGR01179 galE UDP-glucose-4-e 49.3 70 0.0015 32.2 7.9 97 359-470 1-119 (328)
343 cd00529 RuvC_resolvase Hollida 49.2 1.1E+02 0.0023 29.4 8.7 112 218-370 1-118 (154)
344 cd01968 Nitrogenase_NifE_I Nit 49.2 25 0.00055 38.5 5.0 86 345-446 275-365 (410)
345 PRK13937 phosphoheptose isomer 48.8 64 0.0014 31.7 7.3 22 437-460 106-127 (188)
346 KOG0743 AAA+-type ATPase [Post 48.8 28 0.0006 39.6 5.2 104 225-365 241-345 (457)
347 PRK08163 salicylate hydroxylas 48.4 22 0.00048 37.7 4.3 22 357-378 4-25 (396)
348 PRK06392 homoserine dehydrogen 48.4 68 0.0015 34.7 8.0 82 359-446 2-90 (326)
349 COG0476 ThiF Dinucleotide-util 48.4 16 0.00035 37.3 3.1 56 319-401 8-63 (254)
350 COG0644 FixC Dehydrogenases (f 48.3 23 0.0005 38.3 4.5 35 358-404 4-38 (396)
351 PRK12769 putative oxidoreducta 48.1 23 0.00049 41.3 4.7 35 355-401 325-359 (654)
352 PRK07523 gluconate 5-dehydroge 48.0 59 0.0013 32.1 7.0 36 354-401 7-43 (255)
353 PRK12810 gltD glutamate syntha 48.0 25 0.00053 39.2 4.8 34 356-401 142-175 (471)
354 KOG2018 Predicted dinucleotide 47.9 22 0.00047 39.0 4.1 40 353-403 70-109 (430)
355 PRK11154 fadJ multifunctional 47.4 2.7E+02 0.0058 33.3 13.3 107 431-546 410-524 (708)
356 PRK10892 D-arabinose 5-phospha 47.3 1E+02 0.0022 32.4 9.0 83 358-475 48-132 (326)
357 PRK09987 dTDP-4-dehydrorhamnos 47.3 70 0.0015 33.1 7.6 86 359-472 2-104 (299)
358 COG2072 TrkA Predicted flavopr 47.0 24 0.00052 39.4 4.4 75 491-568 134-216 (443)
359 cd01493 APPBP1_RUB Ubiquitin a 47.0 22 0.00047 39.9 4.1 37 354-401 17-53 (425)
360 PRK06475 salicylate hydroxylas 46.9 22 0.00047 38.3 4.0 21 358-378 3-23 (400)
361 PRK07364 2-octaprenyl-6-methox 46.9 21 0.00046 38.1 3.9 33 357-401 18-50 (415)
362 KOG2012 Ubiquitin activating e 46.9 13 0.00027 45.0 2.4 130 321-495 412-552 (1013)
363 PRK07831 short chain dehydroge 46.8 58 0.0012 32.4 6.8 36 354-401 14-51 (262)
364 PRK09186 flagellin modificatio 46.6 26 0.00057 34.3 4.3 36 355-401 2-37 (256)
365 PRK07424 bifunctional sterol d 46.6 33 0.00071 38.2 5.4 56 320-401 156-211 (406)
366 PF04320 DUF469: Protein with 46.6 17 0.00037 33.4 2.7 32 279-310 27-61 (101)
367 TIGR00274 N-acetylmuramic acid 46.5 35 0.00076 36.3 5.4 39 436-476 125-165 (291)
368 PRK05749 3-deoxy-D-manno-octul 46.5 58 0.0013 35.1 7.2 37 428-469 312-349 (425)
369 PF02254 TrkA_N: TrkA-N domain 46.5 14 0.00031 32.3 2.2 98 360-475 1-100 (116)
370 TIGR01790 carotene-cycl lycope 46.4 23 0.0005 37.6 4.1 31 360-402 2-32 (388)
371 PRK00048 dihydrodipicolinate r 46.4 1.1E+02 0.0024 31.6 8.9 88 358-470 2-90 (257)
372 PLN02268 probable polyamine ox 46.3 9.6 0.00021 41.3 1.2 20 359-378 2-21 (435)
373 PRK04663 murD UDP-N-acetylmura 46.2 77 0.0017 34.9 8.2 117 355-511 4-121 (438)
374 PRK07251 pyridine nucleotide-d 46.2 26 0.00056 38.3 4.5 33 358-402 4-36 (438)
375 PLN02427 UDP-apiose/xylose syn 46.2 66 0.0014 34.3 7.5 84 348-448 5-97 (386)
376 PRK08219 short chain dehydroge 46.1 74 0.0016 30.4 7.2 71 358-448 4-82 (227)
377 PRK00414 gmhA phosphoheptose i 46.1 97 0.0021 30.7 8.1 104 355-473 42-147 (192)
378 PTZ00245 ubiquitin activating 46.1 20 0.00043 38.3 3.4 73 353-443 22-98 (287)
379 cd01979 Pchlide_reductase_N Pc 45.9 49 0.0011 36.2 6.6 34 345-378 264-297 (396)
380 PRK07067 sorbitol dehydrogenas 45.7 24 0.00051 34.9 3.8 80 354-448 3-91 (257)
381 PRK06841 short chain dehydroge 45.6 40 0.00087 33.1 5.4 36 354-401 12-48 (255)
382 PRK04176 ribulose-1,5-biphosph 45.5 26 0.00056 36.2 4.1 34 357-402 25-58 (257)
383 TIGR01282 nifD nitrogenase mol 45.4 83 0.0018 35.6 8.4 135 291-446 269-413 (466)
384 PRK12779 putative bifunctional 45.2 29 0.00062 42.7 5.1 40 355-406 304-347 (944)
385 PRK06416 dihydrolipoamide dehy 44.8 25 0.00055 38.6 4.2 33 358-402 5-37 (462)
386 PRK12266 glpD glycerol-3-phosp 44.8 25 0.00055 39.7 4.3 33 358-402 7-39 (508)
387 PF13450 NAD_binding_8: NAD(P) 44.6 33 0.00072 28.4 3.9 31 362-404 1-31 (68)
388 PRK09490 metH B12-dependent me 44.6 2.1E+02 0.0045 36.7 12.2 120 289-451 441-572 (1229)
389 TIGR00031 UDP-GALP_mutase UDP- 44.5 28 0.0006 38.4 4.4 31 359-401 3-33 (377)
390 PRK13403 ketol-acid reductoiso 44.5 43 0.00094 36.7 5.8 64 353-442 12-76 (335)
391 TIGR02082 metH 5-methyltetrahy 44.4 2.4E+02 0.0052 36.0 12.8 120 315-477 456-589 (1178)
392 PLN00093 geranylgeranyl diphos 44.4 26 0.00056 39.2 4.2 21 358-378 40-60 (450)
393 PF13407 Peripla_BP_4: Peripla 44.4 85 0.0018 30.7 7.4 147 179-353 52-206 (257)
394 PRK07589 ornithine cyclodeamin 44.3 2.3E+02 0.005 31.0 11.3 103 357-484 129-238 (346)
395 PRK11259 solA N-methyltryptoph 44.1 29 0.00064 36.4 4.4 34 357-402 3-36 (376)
396 PLN02676 polyamine oxidase 43.9 59 0.0013 36.7 7.0 23 356-378 25-47 (487)
397 PRK05732 2-octaprenyl-6-methox 43.9 32 0.00069 36.3 4.6 37 356-401 2-38 (395)
398 cd01833 XynB_like SGNH_hydrola 43.9 1.2E+02 0.0026 27.7 7.9 68 225-308 18-85 (157)
399 cd01490 Ube1_repeat2 Ubiquitin 43.8 26 0.00056 39.6 4.1 37 359-401 1-37 (435)
400 PLN02653 GDP-mannose 4,6-dehyd 43.8 91 0.002 32.5 7.9 82 354-447 3-93 (340)
401 PTZ00318 NADH dehydrogenase-li 43.6 20 0.00044 39.2 3.2 36 354-401 7-42 (424)
402 TIGR01373 soxB sarcosine oxida 43.6 36 0.00078 36.5 5.0 38 356-403 29-66 (407)
403 cd04951 GT1_WbdM_like This fam 43.5 2.1E+02 0.0045 28.9 10.2 37 428-469 255-291 (360)
404 PRK12826 3-ketoacyl-(acyl-carr 43.5 78 0.0017 30.7 6.9 36 354-401 3-39 (251)
405 PRK09466 metL bifunctional asp 43.4 67 0.0015 39.0 7.7 108 356-470 457-571 (810)
406 COG0673 MviM Predicted dehydro 43.4 63 0.0014 33.5 6.7 94 357-469 3-102 (342)
407 PRK06753 hypothetical protein; 43.4 29 0.00063 36.5 4.2 20 359-378 2-21 (373)
408 PRK07045 putative monooxygenas 43.3 30 0.00064 36.9 4.3 21 358-378 6-26 (388)
409 TIGR03088 stp2 sugar transfera 43.2 1.7E+02 0.0037 30.4 9.9 36 429-469 266-301 (374)
410 TIGR01377 soxA_mon sarcosine o 43.2 30 0.00065 36.3 4.3 33 359-403 2-34 (380)
411 PRK07478 short chain dehydroge 43.1 81 0.0018 31.1 7.1 37 354-401 3-39 (254)
412 PRK13301 putative L-aspartate 42.9 48 0.001 35.3 5.7 117 358-498 3-122 (267)
413 PF13580 SIS_2: SIS domain; PD 42.8 20 0.00042 33.5 2.5 30 429-460 95-124 (138)
414 TIGR03589 PseB UDP-N-acetylglu 42.8 64 0.0014 33.8 6.6 106 355-472 2-125 (324)
415 PRK11559 garR tartronate semia 42.7 1E+02 0.0023 31.8 8.1 32 358-401 3-34 (296)
416 PRK12491 pyrroline-5-carboxyla 42.6 59 0.0013 34.0 6.3 36 358-401 3-38 (272)
417 PRK11749 dihydropyrimidine deh 42.6 33 0.00071 37.9 4.6 35 355-401 138-172 (457)
418 cd01981 Pchlide_reductase_B Pc 42.3 98 0.0021 34.2 8.2 77 353-445 297-378 (430)
419 cd05017 SIS_PGI_PMI_1 The memb 42.1 1.2E+02 0.0025 27.3 7.4 34 437-473 43-78 (119)
420 PRK07608 ubiquinone biosynthes 42.0 29 0.00063 36.6 4.0 32 358-401 6-37 (388)
421 PRK06200 2,3-dihydroxy-2,3-dih 41.9 30 0.00065 34.5 3.9 37 354-401 3-39 (263)
422 PLN02657 3,8-divinyl protochlo 41.7 96 0.0021 33.8 8.0 109 350-470 53-180 (390)
423 PRK12770 putative glutamate sy 41.7 40 0.00087 35.8 5.0 34 356-401 17-50 (352)
424 TIGR02053 MerA mercuric reduct 41.6 31 0.00067 38.0 4.3 30 360-401 3-32 (463)
425 PRK14852 hypothetical protein; 41.6 25 0.00055 43.4 3.8 38 353-401 328-365 (989)
426 PRK06124 gluconate 5-dehydroge 41.5 88 0.0019 30.8 7.1 39 352-401 6-44 (256)
427 cd01974 Nitrogenase_MoFe_beta 41.4 29 0.00064 38.5 4.1 101 348-475 294-405 (435)
428 TIGR02032 GG-red-SF geranylger 41.3 33 0.00072 34.1 4.1 33 359-403 2-34 (295)
429 PRK10157 putative oxidoreducta 41.3 30 0.00065 38.0 4.1 21 358-378 6-26 (428)
430 PLN02463 lycopene beta cyclase 41.3 30 0.00066 38.7 4.2 32 358-401 29-60 (447)
431 PRK12778 putative bifunctional 41.2 39 0.00085 40.1 5.2 36 354-401 428-463 (752)
432 PRK07890 short chain dehydroge 41.2 69 0.0015 31.4 6.3 36 355-401 3-38 (258)
433 TIGR03736 PRTRC_ThiF PRTRC sys 41.0 39 0.00085 35.2 4.6 43 356-401 10-54 (244)
434 PRK10262 thioredoxin reductase 41.0 28 0.0006 36.2 3.6 24 355-378 4-27 (321)
435 COG0771 MurD UDP-N-acetylmuram 41.0 1.5E+02 0.0034 33.7 9.6 118 354-512 4-124 (448)
436 PRK12831 putative oxidoreducta 41.0 35 0.00076 38.1 4.6 34 356-401 139-172 (464)
437 PRK09853 putative selenate red 40.9 33 0.00072 42.6 4.7 35 355-401 537-571 (1019)
438 PF06690 DUF1188: Protein of u 40.9 41 0.00089 35.4 4.7 145 351-550 38-187 (252)
439 PRK08220 2,3-dihydroxybenzoate 40.8 1.4E+02 0.003 29.3 8.2 37 354-402 5-42 (252)
440 PF01946 Thi4: Thi4 family; PD 40.7 40 0.00088 35.1 4.6 35 357-403 17-51 (230)
441 CHL00076 chlB photochlorophyll 40.7 43 0.00093 38.3 5.3 79 353-445 301-382 (513)
442 PRK08849 2-octaprenyl-3-methyl 40.7 36 0.00077 36.4 4.5 33 357-401 3-35 (384)
443 PRK08265 short chain dehydroge 40.7 34 0.00075 34.2 4.1 37 354-401 3-39 (261)
444 TIGR01789 lycopene_cycl lycope 40.5 42 0.00091 36.3 5.0 36 360-405 2-37 (370)
445 COG0654 UbiH 2-polyprenyl-6-me 40.5 36 0.00078 36.6 4.4 33 357-401 2-34 (387)
446 PRK11101 glpA sn-glycerol-3-ph 40.4 34 0.00074 39.1 4.4 33 357-401 6-38 (546)
447 TIGR01984 UbiH 2-polyprenyl-6- 40.3 29 0.00063 36.6 3.6 20 360-379 2-21 (382)
448 PRK01747 mnmC bifunctional tRN 40.1 35 0.00077 39.7 4.6 33 358-402 261-293 (662)
449 PRK12814 putative NADPH-depend 40.1 37 0.00081 39.7 4.8 34 356-401 192-225 (652)
450 PRK06398 aldose dehydrogenase; 40.1 1.6E+02 0.0034 29.5 8.7 74 354-447 3-82 (258)
451 PRK08773 2-octaprenyl-3-methyl 39.9 30 0.00064 36.9 3.7 34 357-402 6-39 (392)
452 TIGR00292 thiazole biosynthesi 39.8 34 0.00074 35.4 4.0 37 356-404 20-56 (254)
453 TIGR01350 lipoamide_DH dihydro 39.7 35 0.00077 37.3 4.3 31 359-401 3-33 (461)
454 PRK03515 ornithine carbamoyltr 39.7 2.2E+02 0.0048 31.1 10.3 132 296-446 97-234 (336)
455 PRK08294 phenol 2-monooxygenas 39.6 31 0.00068 40.3 4.1 47 356-413 31-78 (634)
456 PLN02172 flavin-containing mon 39.6 27 0.00058 39.2 3.4 25 354-378 7-31 (461)
457 PRK07774 short chain dehydroge 39.4 46 0.001 32.5 4.7 37 354-401 3-39 (250)
458 cd05188 MDR Medium chain reduc 39.3 82 0.0018 30.5 6.4 45 345-401 123-167 (271)
459 PRK05976 dihydrolipoamide dehy 39.2 38 0.00083 37.5 4.5 33 357-401 4-36 (472)
460 PRK14694 putative mercuric red 39.2 40 0.00086 37.4 4.6 34 356-401 5-38 (468)
461 PRK13369 glycerol-3-phosphate 39.2 33 0.00072 38.5 4.1 33 358-402 7-39 (502)
462 PRK14806 bifunctional cyclohex 39.1 75 0.0016 37.4 7.1 93 358-472 4-97 (735)
463 PRK08013 oxidoreductase; Provi 39.0 37 0.00081 36.5 4.3 33 357-401 3-35 (400)
464 PRK00711 D-amino acid dehydrog 38.8 38 0.00083 36.2 4.3 31 359-401 2-32 (416)
465 PRK06292 dihydrolipoamide dehy 38.7 40 0.00088 36.9 4.6 33 357-401 3-35 (460)
466 PLN02172 flavin-containing mon 38.4 39 0.00085 37.9 4.5 36 355-402 202-237 (461)
467 PRK06912 acoL dihydrolipoamide 38.4 38 0.00083 37.4 4.3 31 359-401 2-32 (458)
468 PRK08244 hypothetical protein; 38.4 37 0.0008 37.7 4.2 21 358-378 3-23 (493)
469 PRK04690 murD UDP-N-acetylmura 38.3 40 0.00087 37.7 4.5 24 355-378 6-29 (468)
470 PLN02350 phosphogluconate dehy 38.2 98 0.0021 35.5 7.6 97 359-475 8-110 (493)
471 PRK05653 fabG 3-ketoacyl-(acyl 38.2 96 0.0021 29.8 6.6 35 355-401 3-38 (246)
472 PRK07588 hypothetical protein; 38.1 39 0.00084 36.0 4.2 20 359-378 2-21 (391)
473 TIGR03325 BphB_TodD cis-2,3-di 38.1 38 0.00082 33.8 3.9 36 354-401 2-38 (262)
474 PRK06171 sorbitol-6-phosphate 38.0 1.4E+02 0.003 29.7 7.9 76 354-447 6-87 (266)
475 PRK08263 short chain dehydroge 37.9 77 0.0017 31.9 6.1 34 357-401 3-36 (275)
476 TIGR01317 GOGAT_sm_gam glutama 37.9 42 0.00091 37.7 4.6 34 356-401 142-175 (485)
477 COG1748 LYS9 Saccharopine dehy 37.8 56 0.0012 36.5 5.4 85 358-461 2-90 (389)
478 PF12831 FAD_oxidored: FAD dep 37.8 40 0.00087 37.1 4.4 33 360-404 2-34 (428)
479 PRK05714 2-octaprenyl-3-methyl 37.8 32 0.00069 36.9 3.6 32 358-401 3-34 (405)
480 TIGR01988 Ubi-OHases Ubiquinon 37.8 36 0.00078 35.6 3.9 31 360-402 2-32 (385)
481 PF02558 ApbA: Ketopantoate re 37.7 49 0.0011 30.4 4.3 31 360-402 1-31 (151)
482 COG1086 Predicted nucleoside-d 37.6 63 0.0014 37.9 5.9 109 354-481 247-389 (588)
483 PRK08010 pyridine nucleotide-d 37.5 41 0.00088 36.8 4.4 32 358-401 4-35 (441)
484 PRK06185 hypothetical protein; 37.5 39 0.00084 36.1 4.1 34 357-402 6-39 (407)
485 cd01976 Nitrogenase_MoFe_alpha 37.4 74 0.0016 35.3 6.4 87 344-446 287-378 (421)
486 PRK11445 putative oxidoreducta 37.3 31 0.00068 36.6 3.4 20 359-378 3-22 (351)
487 KOG3851 Sulfide:quinone oxidor 37.3 25 0.00054 38.9 2.6 138 356-500 38-230 (446)
488 PRK11728 hydroxyglutarate oxid 37.3 43 0.00094 35.9 4.4 34 358-401 3-36 (393)
489 TIGR03364 HpnW_proposed FAD de 37.3 40 0.00086 35.5 4.1 32 359-402 2-33 (365)
490 PRK08339 short chain dehydroge 37.1 67 0.0014 32.4 5.5 37 353-401 4-41 (263)
491 COG0562 Glf UDP-galactopyranos 37.1 40 0.00086 37.2 4.1 34 359-404 3-36 (374)
492 PRK06523 short chain dehydroge 36.6 1.2E+02 0.0026 30.0 7.1 38 353-401 5-42 (260)
493 PRK08243 4-hydroxybenzoate 3-m 36.6 44 0.00096 35.8 4.4 22 357-378 2-23 (392)
494 PLN02366 spermidine synthase 36.5 80 0.0017 33.9 6.3 92 357-460 92-193 (308)
495 PLN02852 ferredoxin-NADP+ redu 36.4 26 0.00056 40.0 2.7 42 350-401 19-60 (491)
496 PRK08020 ubiF 2-octaprenyl-3-m 36.4 39 0.00084 35.9 3.9 33 357-401 5-37 (391)
497 TIGR00658 orni_carb_tr ornithi 36.3 2.9E+02 0.0063 29.6 10.4 113 315-445 107-224 (304)
498 COG3380 Predicted NAD/FAD-depe 36.2 41 0.00088 36.5 3.9 32 359-402 3-34 (331)
499 COG1893 ApbA Ketopantoate redu 36.2 96 0.0021 33.2 6.7 100 358-479 1-108 (307)
500 PRK12823 benD 1,6-dihydroxycyc 36.1 95 0.0021 30.7 6.4 38 353-401 4-41 (260)
No 1
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=100.00 E-value=3.6e-225 Score=1780.35 Aligned_cols=561 Identities=65% Similarity=1.065 Sum_probs=547.7
Q ss_pred cccCCcccccccccccc-ccccccccccccCCCCccCCCCCHHHHhhcccCCCCCCcccCHHHHHHHHHHHHhcCCCchh
Q 007112 55 DVYGEDFATEDQLITPW-TVSVASGYTLLRDPRHNKGLAFTENERDAHYLRGLLPPALMNQELQEKRLMHNLRQYKVPLQ 133 (617)
Q Consensus 55 ~~~~~~~~~~~~~~~~~-~~~~~~G~~lL~~p~~NKG~aFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~ 133 (617)
..++++..+..+...+| ..++.+|+++|+||++|||+|||.+|||+|||||||||.|+|+|+|++||+.+|+++++||+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~~~l~ 86 (582)
T KOG1257|consen 7 EVYSTAPLTLAHRITPRPVESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLTSPLA 86 (582)
T ss_pred ccccCCCccccccccccccccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhccchHH
Confidence 34444444444444555 66788999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhhhhhHHHhhcCccccCCcccchhhHHHHHHHhhhhcCCCcccccccccccHHHHHhcCCCCCeeEEEE
Q 007112 134 RYVAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVV 213 (617)
Q Consensus 134 Ky~~L~~L~~rNe~LFY~ll~~~~ee~lPivYTPtVG~ac~~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVV 213 (617)
||+||++||+|||+||||+|++|+||+||||||||||+|||+||+|||+|+|||||++|+|||.++|+|||.++|++|||
T Consensus 87 ky~~L~~L~~rNerLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvV 166 (582)
T KOG1257|consen 87 KYIYLMDLQDRNERLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVV 166 (582)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCceeecCCCCCCCcccchhhhHHHHhhhcCCCCCceeeEEeecCCCccccccCcccccccccCCChhhHHHHHHHHHH
Q 007112 214 TDGERILGLGDLGCQGMGIPVGKLSLYTALGGLRPSACLPITIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMT 293 (617)
Q Consensus 214 TDG~rILGLGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~DplYlG~r~~R~~g~eY~~fidefv~ 293 (617)
|||||||||||||++|||||+|||+||||||||+|++|||||||||||||+||+||||+|+||+|++|++||+|+||||+
T Consensus 167 TDGerILGLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~ 246 (582)
T KOG1257|consen 167 TDGERILGLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFME 246 (582)
T ss_pred eCCCceecccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCeeeeeecCCCCcHHHHHHHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHH
Q 007112 294 AVKQNYGEKVLIQFEDFANHNAFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIA 373 (617)
Q Consensus 294 av~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA 373 (617)
||+++|||++|||||||+++|||++|+|||++||||||||||||+|+|||||+|+|++|++|+||+|||+|||+||+|||
T Consensus 247 Av~~~yG~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA 326 (582)
T KOG1257|consen 247 AVVQRYGPNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIA 326 (582)
T ss_pred HHHHHhCcceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCH
Q 007112 374 ELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTK 453 (617)
Q Consensus 374 ~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fte 453 (617)
+||+.+|+++ |+|+|||++||||+|++|||+++|+.+++++|++|||+++++++|+|||+.||||||||+|++||+|||
T Consensus 327 ~l~v~~m~~~-Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~vKPtvLiG~S~~~g~Fte 405 (582)
T KOG1257|consen 327 NLIVMAMVKE-GLSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKEVKPTVLIGASGVGGAFTE 405 (582)
T ss_pred HHHHHHHHHc-CCCHHHHhccEEEEecCceeeccccCCCChhhccccccChHHHHHHHHHHhcCCcEEEecccCCccCCH
Confidence 9999999996 999999999999999999999999878999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCeeeccCCCCcccccchhhHHHHHhC
Q 007112 454 EVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISG 533 (617)
Q Consensus 454 evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~GraifASGSPF~pv~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~ 533 (617)
||||+|+++|||||||||||||+++||||||||+||+||||||||||||||+|+||+|+||||||+|+|||||||+++|+
T Consensus 406 evl~~Ma~~~erPiIFalSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~gK~~~pgQ~NN~yiFPGi~Lg~vlsg 485 (582)
T KOG1257|consen 406 EVLRAMAKSNERPIIFALSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYNGKVYVPGQGNNAYIFPGIGLGVVLSG 485 (582)
T ss_pred HHHHHHHhcCCCceEEecCCCccccccCHHHHhhhcCCcEEEecCCCCCCceeCCcEecccCCceeEecchHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCHHHHHHHHHHHHhccCcccCCCCCccCCCCChhhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCccCCC
Q 007112 534 AIRVRDEMLLAASEALAAQVTQEHFDKGLIYPPFTNIRKISAHIAAKVAAKAYDLGLASRLPRPKDLVSYAESCMYSPMY 613 (617)
Q Consensus 534 a~~Itd~M~laAA~aLA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~~~~p~dl~~~i~~~m~~P~Y 613 (617)
+++|||+||++||++||++++++++++|.||||+++||+||.+||++|+++||++|+|+..|+|+|+.+|++++||+|+|
T Consensus 486 ~~~i~D~mfl~Aae~LA~~v~~e~~~~g~lyPpl~~ir~iS~~Ia~aV~~~a~~~glA~~~p~P~d~~~~~~~~~y~~~Y 565 (582)
T KOG1257|consen 486 ARRIPDEMFLAAAEALAEQVSEEELEKGRLYPPLSNIREISANIAAAVLKYAYEEGLATRYPEPKDKEKFIEESMYNPEY 565 (582)
T ss_pred CccCCHHHHHHHHHHHHhhCCHhHhhcCCcCCChhHHHHHHHHHHHHHHHHHHhcCccccCCCcccHHHHHHhccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 007112 614 RSY 616 (617)
Q Consensus 614 ~~~ 616 (617)
+++
T Consensus 566 ~~~ 568 (582)
T KOG1257|consen 566 RNS 568 (582)
T ss_pred ccc
Confidence 985
No 2
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-212 Score=1716.26 Aligned_cols=540 Identities=50% Similarity=0.862 Sum_probs=530.7
Q ss_pred ccccccccccCCCCccCCCCCHHHHhhcccCCCCCCcccCHHHHHHHHHHHHhcCCCchhhHHHHHHHHhhhhhhhHHHh
Q 007112 74 SVASGYTLLRDPRHNKGLAFTENERDAHYLRGLLPPALMNQELQEKRLMHNLRQYKVPLQRYVAMMDLQERNERLFYKLL 153 (617)
Q Consensus 74 ~~~~G~~lL~~p~~NKG~aFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~rNe~LFY~ll 153 (617)
+..+|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||+|||+||||+|
T Consensus 13 ~~~~G~~lL~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll 92 (563)
T PRK13529 13 TPLRGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKPTDLEKHIYLRNLQDRNETLFYRLL 92 (563)
T ss_pred ecccchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCchhhHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCccccCCcccchhhHHHHHHHhhhhcCCCcccccccccccHHHHHhcCCCCCeeEEEEecCceeecCCCCCCCcccch
Q 007112 154 IDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLGCQGMGIP 233 (617)
Q Consensus 154 ~~~~ee~lPivYTPtVG~ac~~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~ 233 (617)
++|+|||||||||||||+|||+||++||+|||||||++|+|+|.++|+|||.++|++||||||||||||||||++|||||
T Consensus 93 ~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I~ 172 (563)
T PRK13529 93 SDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVVTDGERILGIGDQGIGGMGIP 172 (563)
T ss_pred HhCHHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHhcCCcccceEEEEeCCceeeeccccCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhcCCCCCceeeEEeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhcCCCeeeeeecCCCC
Q 007112 234 VGKLSLYTALGGLRPSACLPITIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANH 313 (617)
Q Consensus 234 iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~DplYlG~r~~R~~g~eY~~fidefv~av~~~fGp~~lIqfEDf~~~ 313 (617)
+||++|||+||||||++|||||||||||||+||+||+|+|+||+|++|++||+|+||||++|+.+| |+++||||||+++
T Consensus 173 ~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~~ 251 (563)
T PRK13529 173 IGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQK 251 (563)
T ss_pred ccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred cHHHHHHHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcC
Q 007112 314 NAFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARK 393 (617)
Q Consensus 314 ~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~ 393 (617)
|||++|+|||+++|||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||++
T Consensus 252 ~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~-~Gl~~eeA~~ 330 (563)
T PRK13529 252 NARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVR-EGLSEEEARK 330 (563)
T ss_pred hHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 5999999999
Q ss_pred eEEEEccCCcccCCcccCCchhchhhhcccCCC---------CCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCC
Q 007112 394 KIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPI---------KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNE 464 (617)
Q Consensus 394 ~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~---------~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~e 464 (617)
+||+||++|||+++|.+ |+++|++|||+.++. .+|+|||+.+|||||||+|+++|+|||||||+|+++||
T Consensus 331 ~i~~vD~~GLl~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~e 409 (563)
T PRK13529 331 RFFMVDRQGLLTDDMPD-LLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCE 409 (563)
T ss_pred eEEEEcCCCeEeCCCCc-chHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCC
Confidence 99999999999999965 999999999976543 69999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCeeeccCCCCcccccchhhHHHHHhCCcccCHHHHHH
Q 007112 465 KPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLA 544 (617)
Q Consensus 465 rPIIFaLSNPt~~aEct~edA~~wT~GraifASGSPF~pv~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~la 544 (617)
|||||||||||++|||||||||+||+|||||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++
T Consensus 410 rPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~a 489 (563)
T PRK13529 410 RPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLMA 489 (563)
T ss_pred CCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCcccCCCCCccCCCCChhhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCccCCCCCCC
Q 007112 545 ASEALAAQVTQEHFDKGLIYPPFTNIRKISAHIAAKVAAKAYDLGLASRLPRPKDLVSYAESCMYSPMYRSYR 617 (617)
Q Consensus 545 AA~aLA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~~~~p~dl~~~i~~~m~~P~Y~~~~ 617 (617)
||++||+++++++++++.|||++++||+||.+||+||+++|+++|+|+. +.|+|+.+||+++||+|.|+||+
T Consensus 490 AA~alA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~-~~~~~~~~~i~~~~w~P~Y~~~~ 561 (563)
T PRK13529 490 AAHALADCVPLAKPGEGALLPPVEDIREVSRAIAIAVAKAAIEEGLARE-TSDEDLEQAIEDNMWQPEYRPYR 561 (563)
T ss_pred HHHHHHhhCccccCCCCeeECCCcchhhhHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHhcCcCCCCcccc
Confidence 9999999999999999999999999999999999999999999999985 67899999999999999999974
No 3
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=9.4e-212 Score=1715.25 Aligned_cols=543 Identities=76% Similarity=1.216 Sum_probs=535.8
Q ss_pred cccccccccCCCCccCCCCCHHHHhhcccCCCCCCcccCHHHHHHHHHHHHhcCCCchhhHHHHHHHHhhhhhhhHHHhh
Q 007112 75 VASGYTLLRDPRHNKGLAFTENERDAHYLRGLLPPALMNQELQEKRLMHNLRQYKVPLQRYVAMMDLQERNERLFYKLLI 154 (617)
Q Consensus 75 ~~~G~~lL~~p~~NKG~aFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~rNe~LFY~ll~ 154 (617)
..+|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||+|||+||||+++
T Consensus 39 ~~~G~~ll~~p~~NKgtaFt~~ER~~lgl~GLlP~~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll~ 118 (581)
T PLN03129 39 VASGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLSQELQVKRFMENLRALESPLAKYRALMDLQERNERLFYRVLI 118 (581)
T ss_pred CCcchhhhcCcccccccCCCHHHHhhcCCccCCCCCcCCHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhCcccchhhhh
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccCCcccchhhHHHHHHHhhhhcCCCcccccccccccHHHHHhcCCCCCeeEEEEecCceeecCCCCCCCcccchh
Q 007112 155 DNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLGCQGMGIPV 234 (617)
Q Consensus 155 ~~~ee~lPivYTPtVG~ac~~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~i 234 (617)
+|++||||||||||||+||++||++||+|||||||++|+|+|+++|+|||.++|++||||||||||||||||++||||||
T Consensus 119 ~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~~Gm~I~~ 198 (581)
T PLN03129 119 DNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLGDLGVQGMGIPV 198 (581)
T ss_pred cCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHHhcCCCcCceEEEEecCcceeeccccCCCccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcCCCCCceeeEEeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhcCCCeeeeeecCCCCc
Q 007112 235 GKLSLYTALGGLRPSACLPITIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHN 314 (617)
Q Consensus 235 GKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~DplYlG~r~~R~~g~eY~~fidefv~av~~~fGp~~lIqfEDf~~~~ 314 (617)
||++|||+||||||++|||||||||||||+||+||+|+|+||+|++|+||++|+||||++|+.+|||+++||||||+++|
T Consensus 199 GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~ 278 (581)
T PLN03129 199 GKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKN 278 (581)
T ss_pred hHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCe
Q 007112 315 AFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKK 394 (617)
Q Consensus 315 Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~ 394 (617)
||++|+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|+++.|+|+|||++|
T Consensus 279 af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~ 358 (581)
T PLN03129 279 AFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKR 358 (581)
T ss_pred HHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987569999999999
Q ss_pred EEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007112 395 IWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNP 474 (617)
Q Consensus 395 i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNP 474 (617)
||+||++|||+++|.++|+++|++||++.++..+|+|||+.+|||||||+|+++|+|||||||+|+++|+||||||||||
T Consensus 359 i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNP 438 (581)
T PLN03129 359 IWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNP 438 (581)
T ss_pred EEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 99999999999999766999999999987778999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCeeeccCCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHHHhccC
Q 007112 475 TSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQVT 554 (617)
Q Consensus 475 t~~aEct~edA~~wT~GraifASGSPF~pv~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~ 554 (617)
|++|||||||||+||+|+|||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++||++||++++
T Consensus 439 t~~~E~~pe~a~~~T~G~ai~AtGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~Itd~m~~aAA~aLA~~v~ 518 (581)
T PLN03129 439 TSKAECTAEEAYTWTGGRAIFASGSPFDPVEYNGKTFHPGQANNAYIFPGIGLGALLSGAIRVTDDMLLAAAEALAAQVT 518 (581)
T ss_pred CCCcCcCHHHHHHhhcCCEEEEeCCCCCCeeeCCeeecCccccceeeccchhhHHHhcCCcCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccCCCCChhhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCccCCCCCCC
Q 007112 555 QEHFDKGLIYPPFTNIRKISAHIAAKVAAKAYDLGLASRLPRPKDLVSYAESCMYSPMYRSYR 617 (617)
Q Consensus 555 ~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~~~~p~dl~~~i~~~m~~P~Y~~~~ 617 (617)
++++..+.|||++++||+||.+||+||+++|+++|+|+..++|+++.+|++++||+|+|+||+
T Consensus 519 ~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~G~A~~~~~~~~~~~~i~~~mw~P~Y~~~~ 581 (581)
T PLN03129 519 EEELAKGAIYPPFSRIRDISAHVAAAVAAKAYEEGLATRLPRPEDLVEYAESCMYSPVYRPYR 581 (581)
T ss_pred cccCCCCeecCCCcchhHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHcCcCCCCCCCC
Confidence 999999999999999999999999999999999999987778899999999999999999985
No 4
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=5.4e-210 Score=1695.61 Aligned_cols=539 Identities=51% Similarity=0.863 Sum_probs=526.7
Q ss_pred ccccccccccccCCCCccCCCCCHHHHhhcccCCCCCCcccCHHHHHHHHHHHHhcCCCchhhHHHHHHHHhhhhhhhHH
Q 007112 72 TVSVASGYTLLRDPRHNKGLAFTENERDAHYLRGLLPPALMNQELQEKRLMHNLRQYKVPLQRYVAMMDLQERNERLFYK 151 (617)
Q Consensus 72 ~~~~~~G~~lL~~p~~NKG~aFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~rNe~LFY~ 151 (617)
..+..+|+++|+||++|||||||.+||++|||||||||+|+|+|+|++|||.||+++++||+||+||++||+|||+||||
T Consensus 13 ~~~~~~G~~lL~~p~~NKgtAFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ 92 (559)
T PTZ00317 13 VPSNARGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIETPINKYQFLRNIHDTNETLFYA 92 (559)
T ss_pred cccCCcchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhhCCChHHHHHHHHHHhhcCchHHHH
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCccccCCcccchhhHHHHHHHhhhhcCCCcccccccccccHHHHHhcCCCCCeeEEEEecCceeecCCCCCCCccc
Q 007112 152 LLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLGCQGMG 231 (617)
Q Consensus 152 ll~~~~ee~lPivYTPtVG~ac~~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~Gmg 231 (617)
+|++|+|||||||||||||+||++||++||+|||||||++|||+|+++|+|||.++|++||||||||||||||||++|||
T Consensus 93 ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l~Nwp~~~v~viVVTDG~rILGLGDlG~~Gm~ 172 (559)
T PTZ00317 93 LLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDGSRILGLGDLGANGMG 172 (559)
T ss_pred HHHhCHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHHhcCCccCceEEEEeccccccccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHhhhcCCCCCceeeEEeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhcCCCeeeeeecCC
Q 007112 232 IPVGKLSLYTALGGLRPSACLPITIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFA 311 (617)
Q Consensus 232 I~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~DplYlG~r~~R~~g~eY~~fidefv~av~~~fGp~~lIqfEDf~ 311 (617)
||+||++|||+||||||++|||||||||||||+||+||+||||||+|++|++||+|+||||+||+++| |+++||||||+
T Consensus 173 I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~Iq~EDf~ 251 (559)
T PTZ00317 173 ISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRW-PNAVVQFEDFS 251 (559)
T ss_pred ccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHHhC-CCeEEehhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred CCcHHHHHHHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhh
Q 007112 312 NHNAFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEA 391 (617)
Q Consensus 312 ~~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA 391 (617)
++|||++|+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|++ +|+|+|||
T Consensus 252 ~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~-~Gls~eeA 330 (559)
T PTZ00317 252 NNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAE-YGVTREEA 330 (559)
T ss_pred CccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 59999999
Q ss_pred cCeEEEEccCCcccCCcccCCchhchhhhccc--CC---CCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCc
Q 007112 392 RKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH--AP---IKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKP 466 (617)
Q Consensus 392 r~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~--~~---~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erP 466 (617)
++|||+||++|||+++|.++|+++|++|||+. ++ ..+|+|||+.+|||||||+|+++|+|||||||+|+++||||
T Consensus 331 ~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rP 410 (559)
T PTZ00317 331 LKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERP 410 (559)
T ss_pred cCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCC
Confidence 99999999999999999766999999999974 33 57999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCeeeccCCCCcccccchhhHHHHHhCCcccCHHHHHHHH
Q 007112 467 VIFALSNPTSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAAS 546 (617)
Q Consensus 467 IIFaLSNPt~~aEct~edA~~wT~GraifASGSPF~pv~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA 546 (617)
|||||||||++|||||||||+||+|||||||||||+||+||||+++||||||+|||||||||+++++|++|||+||++||
T Consensus 411 IIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~m~~aAA 490 (559)
T PTZ00317 411 IIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTLNGKTIQPSQGNNLYVFPGVGLGCAIAQPSYIPDEMLIAAA 490 (559)
T ss_pred EEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCCCCcccCCeeeccCcCcceeeccchhhhhHhhcccCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCcccCCCCCccCCCCChhhhHHHHHHHHHHHHHHcCCCCC--CCC-chhHHHHHHhCCccCC
Q 007112 547 EALAAQVTQEHFDKGLIYPPFTNIRKISAHIAAKVAAKAYDLGLASR--LPR-PKDLVSYAESCMYSPM 612 (617)
Q Consensus 547 ~aLA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~--~~~-p~dl~~~i~~~m~~P~ 612 (617)
++||++++++++..|.|||++++||+||.+||+||+++|+++|+|+. .|+ ++|+.+||+++||+|.
T Consensus 491 ~aLA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aV~~~A~~~G~A~~~~~~~~~~~~~~~i~~~~w~P~ 559 (559)
T PTZ00317 491 ASLATLVSEEDLREGKLYPPLEDIREISAHIAVDVIEEAQEMGIAKNKDLPDNRDELLALVKDRMWVPK 559 (559)
T ss_pred HHHHhhCCccccCCCeeeCCCccHhHHHHHHHHHHHHHHHHhCCCccCCCCCCHHHHHHHHHhcCcCCC
Confidence 99999999999999999999999999999999999999999999985 344 3689999999999995
No 5
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=1.9e-118 Score=945.53 Aligned_cols=427 Identities=37% Similarity=0.546 Sum_probs=382.9
Q ss_pred ccCHHHHHHHHHHHHhcCCC-chhhHHHHHHHHhhhhhhhHHHhhcCccccCCcccchhhHHHHHHHhhhhcCCCccccc
Q 007112 111 LMNQELQEKRLMHNLRQYKV-PLQRYVAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYIS 189 (617)
Q Consensus 111 v~t~e~Q~~R~~~~~~~~~~-~l~Ky~~L~~L~~rNe~LFY~ll~~~~ee~lPivYTPtVG~ac~~~s~i~r~p~Glyis 189 (617)
++|+| |.+|.+.++..+.+ +|++|.|+ ++|+.+||.++-.|..|+|||+||||||++|++|++.|++++
T Consensus 1 v~t~~-q~~~~~~~~~~~~~~aL~~h~~~----~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~~~~~----- 70 (432)
T COG0281 1 VETIE-QAERAYEQYEQLKTEALDKHEYL----DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDPRKAY----- 70 (432)
T ss_pred CccHH-HHHHHHHHHhhhhhhhHHHhccC----CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCcchhh-----
Confidence 57889 99999999999888 99999999 899999999999999999999999999999999999888885
Q ss_pred ccccccHHHHHhcCCCCCeeEEEEecCceeecCCCCC-CCcccchhhhHHHHhhhcCCCCCceeeEEeecCCCccccccC
Q 007112 190 LKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLG-CQGMGIPVGKLSLYTALGGLRPSACLPITIDVGTNNEQLLND 268 (617)
Q Consensus 190 ~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG-~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~D 268 (617)
.++.+++.|||||||+|||||||+| ..||+||+||++|||+||||| +|||+||+||||+
T Consensus 71 ------------~yt~~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid---~~pI~ld~~~~~e----- 130 (432)
T COG0281 71 ------------SYTARGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVGTNNE----- 130 (432)
T ss_pred ------------hcCCCCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCC---ceeeEeeCCChHH-----
Confidence 3455666999999999999999999 679999999999999999999 9999999999988
Q ss_pred cccccccccCCChhhHHHHHHHHHHHHHHhcCCCeeeeeecCCCCcHHHHHHHHcCCCceeecCccchhHHHHHHHHHHH
Q 007112 269 EFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAFELLSKYSSSHLVFNDDIQGTASVVLAGILSAL 348 (617)
Q Consensus 269 plYlG~r~~R~~g~eY~~fidefv~av~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Al 348 (617)
+++||++++++||. +.+|||||..-|+.+.+.||+.+||||||||||||+|+||||+||+
T Consensus 131 -------------------i~~~Vkal~p~Fgg-inLedi~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv~lA~llnal 190 (432)
T COG0281 131 -------------------IIEFVKALEPTFGG-INLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVTLAALLNAL 190 (432)
T ss_pred -------------------HHHHHHHhhhcCCC-cceeecccchhhHHHHHHhhcCCCCcccccccHHHHHHHHHHHHHH
Confidence 89999999999954 5555555544444455667778999999999999999999999999
Q ss_pred HHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCccc-CCchhchhhhc-ccCCC
Q 007112 349 KLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKE-SLQHFKKPWAH-EHAPI 426 (617)
Q Consensus 349 r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~-~L~~~k~~fA~-~~~~~ 426 (617)
|++|++|+|+||||+|||+||+|||++|+.++++ +++||+||++|+|+++|.+ .++++|..+|. +....
T Consensus 191 k~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~---------~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~ 261 (432)
T COG0281 191 KLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVK---------EENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGER 261 (432)
T ss_pred HHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCC---------cccEEEEecCCcccCCCcccccchHHHHHHHhhhccc
Confidence 9999999999999999999999999999987544 2899999999999999975 36777777775 44444
Q ss_pred CCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCCCCccee
Q 007112 427 KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSPFDPVEY 506 (617)
Q Consensus 427 ~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~GraifASGSPF~pv~~ 506 (617)
.+ .+++ .+||||||+|++ |+||+|+|++|+ ++|||||||||| +|++||||.+|++|++|+|||||
T Consensus 262 ~~-~~~~--~~adv~iG~S~~-G~~t~e~V~~Ma---~~PiIfalaNP~--pEi~Pe~a~~~~~~aaivaTGrs------ 326 (432)
T COG0281 262 TL-DLAL--AGADVLIGVSGV-GAFTEEMVKEMA---KHPIIFALANPT--PEITPEDAKEWGDGAAIVATGRS------ 326 (432)
T ss_pred cc-cccc--cCCCEEEEcCCC-CCcCHHHHHHhc---cCCEEeecCCCC--ccCCHHHHhhcCCCCEEEEeCCC------
Confidence 43 4455 569999999999 899999999998 459999999999 99999999999999999999975
Q ss_pred CCeeeccCCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHHHhccCcccCCCCCccCCCCChhhhHHHHHHHHHHHHH
Q 007112 507 NGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQVTQEHFDKGLIYPPFTNIRKISAHIAAKVAAKAY 586 (617)
Q Consensus 507 ~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~ 586 (617)
++|||+||+|+|||||+|++++||++|||+|++|||+|||+++.++.. .+.|+|++++.|.+|. ||.||+++|.
T Consensus 327 ----d~PnQvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~~~~~~~~-~~~iiP~~~d~r~~~~-vA~AVa~aA~ 400 (432)
T COG0281 327 ----DYPNQVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIADLAREEVL-EEYIIPPPFDPRVISR-VAVAVAKAAM 400 (432)
T ss_pred ----CCcccccceeEcchhhhhhHhhccccCCHHHHHHHHHHHHhhccccCC-cCCCCCCCCchhHHHH-HHHHHHHHHH
Confidence 555699999999999999999999999999999999999999887665 7899999999999999 9999999999
Q ss_pred HcCCCCCCCCc-hhHHHHHHhCCccCCCCCCC
Q 007112 587 DLGLASRLPRP-KDLVSYAESCMYSPMYRSYR 617 (617)
Q Consensus 587 ~~GlA~~~~~p-~dl~~~i~~~m~~P~Y~~~~ 617 (617)
++|+|+..+.. +++.++++..+|.|.|.+++
T Consensus 401 ~~GvA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (432)
T COG0281 401 EEGVARRPIDDEEAYEQALEARLWKPEYRMKR 432 (432)
T ss_pred HcCCccCCCCCHHHHHHHHHHHhcCcccccCC
Confidence 99999965554 46899999999999998863
No 6
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=7.1e-111 Score=947.61 Aligned_cols=370 Identities=31% Similarity=0.519 Sum_probs=336.9
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccccccHHHHHhcCCCCCeeEEEEecCceeecCCCCCCCc-ccchhhh
Q 007112 158 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLGCQG-MGIPVGK 236 (617)
Q Consensus 158 ee~lPivYTPtVG~ac~~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI~iGK 236 (617)
.+.|.++|||||+++|++ |+++|+++| .|+.+.+.|+|||||||||||||+|++| ||||+||
T Consensus 34 ~~dl~l~YtPgVa~~c~~---i~~~p~~~~--------------~~t~r~n~v~VvtdG~~vLGLGdiG~~a~~pvmeGK 96 (764)
T PRK12861 34 QRDLALAYTPGVASACEE---IAADPLNAF--------------RFTSRGNLVGVITNGTAVLGLGNIGALASKPVMEGK 96 (764)
T ss_pred hHHceeecCCchHHHHHH---HHhChHhhh--------------hhhccCcEEEEEecchhhccCCCcCcccccchHHHH
Confidence 345999999999999999 899999996 4445556799999999999999999997 9999999
Q ss_pred HHHHhhhcCCCCCceeeEEeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhcCCCeeeeeecCCCCcHH
Q 007112 237 LSLYTALGGLRPSACLPITIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAF 316 (617)
Q Consensus 237 l~LYta~gGI~P~~~LPI~LDvGTnNe~LL~DplYlG~r~~R~~g~eY~~fidefv~av~~~fGp~~lIqfEDf~~~~Af 316 (617)
++|||+||||| ++|+|||| +|| ++|| |||++++++||. ||||||++||||
T Consensus 97 ~~L~~~~agid-------~~di~~~~----~dp---------------d~~v-~~v~a~~~~fg~---i~lED~~~p~~f 146 (764)
T PRK12861 97 AVLFKKFAGID-------VFDIEINE----TDP---------------DKLV-DIIAGLEPTFGG---INLEDIKAPECF 146 (764)
T ss_pred HHHHhhccCCC-------ccccccCC----CCH---------------HHHH-HHHHHHHhhcCC---ceeeeccCchHH
Confidence 99999999999 56666766 688 7889 999999999977 999999999999
Q ss_pred HHHHHHcC--CCceeecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCe
Q 007112 317 ELLSKYSS--SHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKK 394 (617)
Q Consensus 317 ~lL~ryr~--~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~ 394 (617)
++|+|||+ +||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||++|+. .|+++| |
T Consensus 147 ~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~-----~G~~~~----~ 217 (764)
T PRK12861 147 TVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVD-----LGLPVE----N 217 (764)
T ss_pred HHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHH-----cCCChh----h
Confidence 99999998 699999999999999999999999999999999999999999999999999975 499864 9
Q ss_pred EEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007112 395 IWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNP 474 (617)
Q Consensus 395 i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNP 474 (617)
||+||++|||+++|.+.|+++|++||++. +..+|+|+|+. ||||||+|+ +|+||+|+|++|+ +||||||||||
T Consensus 218 i~~~D~~Gli~~~r~~~l~~~k~~~a~~~-~~~~L~eai~~--advliG~S~-~g~ft~e~v~~Ma---~~PIIFaLsNP 290 (764)
T PRK12861 218 IWVTDIEGVVYRGRTTLMDPDKERFAQET-DARTLAEVIGG--ADVFLGLSA-GGVLKAEMLKAMA---ARPLILALANP 290 (764)
T ss_pred EEEEcCCCeeeCCCcccCCHHHHHHHhhc-CCCCHHHHHhc--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEECCCC
Confidence 99999999999999766999999999985 55799999998 899999998 8999999999997 59999999999
Q ss_pred CCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCeeeccCCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHHHhccC
Q 007112 475 TSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQVT 554 (617)
Q Consensus 475 t~~aEct~edA~~wT~GraifASGSPF~pv~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~ 554 (617)
| +||+||||++ |+|+|||||| |+++|||+||+|+|||||+|+++++|++|||+|+++||++||++++
T Consensus 291 t--pE~~pe~a~~-~~g~aivaTG----------rs~~pnQ~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~alA~~~~ 357 (764)
T PRK12861 291 T--PEIFPELAHA-TRDDVVIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTITREMEIAAVHAIAGLAE 357 (764)
T ss_pred C--ccCCHHHHHh-cCCCEEEEeC----------CcCCCCccceeeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhCC
Confidence 9 8999999987 9999999997 7999999999999999999999999999999999999999999999
Q ss_pred cccCC------------CCCcc--CCCCChhhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHh
Q 007112 555 QEHFD------------KGLIY--PPFTNIRKISAHIAAKVAAKAYDLGLASRLPRPKDLVSYAES 606 (617)
Q Consensus 555 ~~~~~------------~g~l~--P~~~~ir~vs~~VA~aVa~~A~~~GlA~~~~~p~dl~~~i~~ 606 (617)
+++++ .|.+| |+..+ ++||..||.||+++|+++|+|+. |. +++.+|+++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~iiP~~~~-~~v~~~VA~aVa~~a~~~GvA~~-~~-~~~~~~~~~ 420 (764)
T PRK12861 358 EEQNDVVAAAYGAYDVSFGPQYLIPKPFD-PRLIVRIAPAVAKAAMEGGVATR-PI-ADLDAYVEQ 420 (764)
T ss_pred cccCHHHHHhhccccccCCCCCCCCCCCC-hhHHHHHHHHHHHHHHHhCCCCC-Cc-hhHHHHHHH
Confidence 87533 45555 95555 68999999999999999999985 32 566666554
No 7
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=4.9e-110 Score=945.16 Aligned_cols=369 Identities=30% Similarity=0.489 Sum_probs=339.1
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccccccHHHHHhcCCCCCeeEEEEecCceeecCCCCCCCc-ccchhhh
Q 007112 158 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLGCQG-MGIPVGK 236 (617)
Q Consensus 158 ee~lPivYTPtVG~ac~~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI~iGK 236 (617)
.+.|.++|||||+++|++ |+++|+++| .|+.+.+.|+|||||||||||||+|++| ||||+||
T Consensus 38 ~~dl~~~ytpgv~~~~~~---i~~~~~~~~--------------~~t~~~n~v~vvtdg~~vLGlGd~G~~~~~pv~egK 100 (763)
T PRK12862 38 QRDLALAYSPGVAAPCLE---IAADPANAA--------------RYTSRGNLVAVVSNGTAVLGLGNIGPLASKPVMEGK 100 (763)
T ss_pred HHHceeeeCCchHHHHHH---HHhChHhhh--------------hcccCCcEEEEEechhhhccccccCcccccchHHHH
Confidence 345999999999999999 889998888 5667778999999999999999999996 9999999
Q ss_pred HHHHhhhcCCCCCceeeEEeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhcCCC-eeeeeecCCCCcH
Q 007112 237 LSLYTALGGLRPSACLPITIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEK-VLIQFEDFANHNA 315 (617)
Q Consensus 237 l~LYta~gGI~P~~~LPI~LDvGTnNe~LL~DplYlG~r~~R~~g~eY~~fidefv~av~~~fGp~-~lIqfEDf~~~~A 315 (617)
++|||+||||| ++ |+||||+ || ||||++|+..| |+ ..||||||+++||
T Consensus 101 ~~l~~~~~gi~---~~----~i~~~~~----d~-------------------d~~v~~v~~~~-p~f~~i~~ED~~~~~~ 149 (763)
T PRK12862 101 AVLFKKFAGID---VF----DIELDES----DP-------------------DKLVEIVAALE-PTFGGINLEDIKAPEC 149 (763)
T ss_pred HHHHHhhcCCC---cc----ccccCCC----CH-------------------HHHHHHHHHhC-CCcceeeeecccCchH
Confidence 99999999999 55 5555566 66 99999999999 88 7999999999999
Q ss_pred HHHHHHHcCC--CceeecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcC
Q 007112 316 FELLSKYSSS--HLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARK 393 (617)
Q Consensus 316 f~lL~ryr~~--~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~ 393 (617)
|++|+|||++ ||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+. .|+++ +
T Consensus 150 f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~~----~ 220 (763)
T PRK12862 150 FYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVS-----LGVKR----E 220 (763)
T ss_pred HHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHH-----cCCCc----c
Confidence 9999999987 89999999999999999999999999999999999999999999999999986 38874 8
Q ss_pred eEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007112 394 KIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN 473 (617)
Q Consensus 394 ~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN 473 (617)
||||||++|||+++|.+.|+++|++||++. +..+|+|+|+. ||||||+|+ +|+||+|+|++|+ +|||||||||
T Consensus 221 ~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~-~~~~l~e~~~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsN 293 (763)
T PRK12862 221 NIWVTDIKGVVYEGRTELMDPWKARYAQKT-DARTLAEVIEG--ADVFLGLSA-AGVLKPEMVKKMA---PRPLIFALAN 293 (763)
T ss_pred cEEEEcCCCeeeCCCCccccHHHHHHhhhc-ccCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEeCCC
Confidence 999999999999999766999999999985 55799999998 999999999 8999999999997 9999999999
Q ss_pred CCCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCeeeccCCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHHHhcc
Q 007112 474 PTSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQV 553 (617)
Q Consensus 474 Pt~~aEct~edA~~wT~GraifASGSPF~pv~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v 553 (617)
|| |||||||||+||+| |||||| |+++|||+||+|+|||||+|+++++|++|||+|+++||++||+++
T Consensus 294 P~--~E~~p~~a~~~~~~-~i~atG----------rs~~p~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~ 360 (763)
T PRK12862 294 PT--PEILPEEARAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRAIAELA 360 (763)
T ss_pred Cc--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeeccchhhhHHhcCCeeCCHHHHHHHHHHHHhcc
Confidence 99 89999999999999 999999 799999999999999999999999999999999999999999999
Q ss_pred Cccc--------------CCCCCccCCCCChhhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHh
Q 007112 554 TQEH--------------FDKGLIYPPFTNIRKISAHIAAKVAAKAYDLGLASRLPRPKDLVSYAES 606 (617)
Q Consensus 554 ~~~~--------------~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~~~~p~dl~~~i~~ 606 (617)
++++ +....|||+..+ ++|+..||.||+++|+++|+|+. + .+++.+|+++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~i~P~~~~-~~v~~~va~aVa~~a~~~g~a~~-~-~~~~~~~~~~ 424 (763)
T PRK12862 361 REEQSDVVAAAYGGEDLSFGPDYLIPKPFD-PRLILKIAPAVAQAAMDSGVATR-P-IEDMDAYREQ 424 (763)
T ss_pred cccCCHHHHHhhccccccCCCCcccCCCCC-hhHHHHHHHHHHHHHHHhCCCCC-C-chhHHHHHHH
Confidence 9873 445569996666 78999999999999999999985 3 3466677654
No 8
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=1.4e-108 Score=929.33 Aligned_cols=358 Identities=32% Similarity=0.514 Sum_probs=334.4
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccccccHHHHHhcCCCCCeeEEEEecCceeecCCCCCCC-cccchhhh
Q 007112 158 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLGCQ-GMGIPVGK 236 (617)
Q Consensus 158 ee~lPivYTPtVG~ac~~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~-GmgI~iGK 236 (617)
.+.|+++||||||++|++ |+++|+++| ++.+|| +.|+|||||+|||||||+|++ |||||+||
T Consensus 30 ~~dl~~~Ytpgv~~~c~~---i~~~~~~~~-~~t~~~-------------n~v~vvtdg~~vLGlGd~G~~a~~pv~egK 92 (752)
T PRK07232 30 QRDLSLAYSPGVAAPCLE---IAKDPADAY-KYTARG-------------NLVAVISNGTAVLGLGNIGALASKPVMEGK 92 (752)
T ss_pred hhhcceecCCchHHHHHH---HHhChhhcc-ccccCC-------------cEEEEEccchhhccccccccccCccHHHHH
Confidence 345999999999999996 899999999 666665 459999999999999999999 89999999
Q ss_pred HHHHhhhcCCCCCceeeEEeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhcCCCe-eeeeecCCCCcH
Q 007112 237 LSLYTALGGLRPSACLPITIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKV-LIQFEDFANHNA 315 (617)
Q Consensus 237 l~LYta~gGI~P~~~LPI~LDvGTnNe~LL~DplYlG~r~~R~~g~eY~~fidefv~av~~~fGp~~-lIqfEDf~~~~A 315 (617)
++|||+||||| + +|+||||++ +||||++|+..| |.. +||||||++|||
T Consensus 93 ~~l~~~~~gid---~----~~i~~~~~d-----------------------~de~v~~v~~~~-p~~g~i~~ED~~~p~~ 141 (752)
T PRK07232 93 GVLFKKFAGID---V----FDIEVDEED-----------------------PDKFIEAVAALE-PTFGGINLEDIKAPEC 141 (752)
T ss_pred HHHHHhhcCCC---c----cccccCCCC-----------------------HHHHHHHHHHhC-CCccEEeeeecCCchH
Confidence 99999999999 5 555556663 799999999999 775 999999999999
Q ss_pred HHHHHHHcCC--CceeecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcC
Q 007112 316 FELLSKYSSS--HLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARK 393 (617)
Q Consensus 316 f~lL~ryr~~--~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~ 393 (617)
|++|+|||++ ||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+. .|++ ++
T Consensus 142 f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~----~~ 212 (752)
T PRK07232 142 FYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVA-----LGAK----KE 212 (752)
T ss_pred HHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHH-----cCCC----cc
Confidence 9999999985 89999999999999999999999999999999999999999999999999986 3887 78
Q ss_pred eEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007112 394 KIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN 473 (617)
Q Consensus 394 ~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN 473 (617)
+||+||++|||+++|.++|+++|++||++ .+..+|+|+|+. ||||||+|+ +|+||+|+|++|+ +|||||||||
T Consensus 213 ~i~~~D~~G~i~~~r~~~~~~~k~~~a~~-~~~~~l~~~i~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsN 285 (752)
T PRK07232 213 NIIVCDSKGVIYKGRTEGMDEWKAAYAVD-TDARTLAEAIEG--ADVFLGLSA-AGVLTPEMVKSMA---DNPIIFALAN 285 (752)
T ss_pred cEEEEcCCCeecCCCcccccHHHHHHhcc-CCCCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEecCC
Confidence 99999999999999966699999999998 556799999998 999999999 8999999999997 7999999999
Q ss_pred CCCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCeeeccCCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHHHhcc
Q 007112 474 PTSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQV 553 (617)
Q Consensus 474 Pt~~aEct~edA~~wT~GraifASGSPF~pv~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v 553 (617)
|| +||||||||+||+| +||||| |+++|||+||+|+|||||+|+++++|++|||+|+++||++||+++
T Consensus 286 P~--~E~~p~~a~~~~~~-~i~atG----------rs~~pnQ~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~ 352 (752)
T PRK07232 286 PD--PEITPEEAKAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKLAAVRAIAELA 352 (752)
T ss_pred CC--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhc
Confidence 99 89999999999999 999999 799999999999999999999999999999999999999999999
Q ss_pred Ccc--------------cCCCCCccCCCCChhhhHHHHHHHHHHHHHHcCCCCC
Q 007112 554 TQE--------------HFDKGLIYPPFTNIRKISAHIAAKVAAKAYDLGLASR 593 (617)
Q Consensus 554 ~~~--------------~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~ 593 (617)
+++ ++....|+|+.++ ++|+..||.||+++|+++|+|+.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~iip~~~~-~~~~~~va~av~~~a~~~g~a~~ 405 (752)
T PRK07232 353 REEVSDEVAAAYGGQKLSFGPEYIIPKPFD-PRLIVKIAPAVAKAAMDSGVATR 405 (752)
T ss_pred ccccchhhhhhhccccccCCCCccCCCCCC-hhHHHHHHHHHHHHHHhhCcccC
Confidence 886 6888999999888 57999999999999999999985
No 9
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=1.2e-99 Score=774.83 Aligned_cols=277 Identities=63% Similarity=1.021 Sum_probs=270.5
Q ss_pred ccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCC
Q 007112 333 IQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESL 412 (617)
Q Consensus 333 iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L 412 (617)
|||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+.+|++ +|+|+|||+++||++|++|||+++|.+ |
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~-~G~~~eeA~~~i~~vD~~Gll~~~r~~-l 78 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVR-EGLSEEEARKKIWLVDSKGLLTKDRKD-L 78 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHH-cCCChhhccCeEEEEcCCCeEeCCCCc-c
Confidence 89999999999999999999999999999999999999999999999998 599999999999999999999999965 9
Q ss_pred chhchhhhcccC--CCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccc
Q 007112 413 QHFKKPWAHEHA--PIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSK 490 (617)
Q Consensus 413 ~~~k~~fA~~~~--~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~ 490 (617)
+++|++||++.+ +..+|+|+|+++|||||||+|+++|+||+|+||+|+++|+|||||||||||+++||||||||+||+
T Consensus 79 ~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~ 158 (279)
T cd05312 79 TPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTD 158 (279)
T ss_pred hHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhc
Confidence 999999999866 668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEeeCCCCCcceeCCeeeccCCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHHHhccCcccCCCCCccCCCCCh
Q 007112 491 GQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQVTQEHFDKGLIYPPFTNI 570 (617)
Q Consensus 491 GraifASGSPF~pv~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~~~~~~g~l~P~~~~i 570 (617)
|+|||||||||+||+||||+++||||||+|+|||||||+++++|++|||+||++||++||++++++++.++.|||+++++
T Consensus 159 G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~~l~~~~l~P~~~~~ 238 (279)
T cd05312 159 GRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEELARGRLYPPLSNI 238 (279)
T ss_pred CCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCccccCCCeeeCCCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCccC
Q 007112 571 RKISAHIAAKVAAKAYDLGLASRLPRPKDLVSYAESCMYSP 611 (617)
Q Consensus 571 r~vs~~VA~aVa~~A~~~GlA~~~~~p~dl~~~i~~~m~~P 611 (617)
|+||..||.+|+++|+++|+|+..++|+|+++||+++||+|
T Consensus 239 r~vs~~VA~aVa~~A~~~gla~~~~~~~~~~~~i~~~~w~P 279 (279)
T cd05312 239 REISAQIAVAVAKYAYEEGLATRYPPPEDLEEYVKSQMWEP 279 (279)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhCccCC
Confidence 99999999999999999999987677789999999999998
No 10
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=1.5e-96 Score=744.03 Aligned_cols=252 Identities=57% Similarity=0.931 Sum_probs=229.9
Q ss_pred ccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCC
Q 007112 333 IQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESL 412 (617)
Q Consensus 333 iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L 412 (617)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|+++ |+|++|||+||||+|++|||+++|. +|
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~-G~~~~eA~~~i~lvD~~Gll~~~r~-~l 78 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVRE-GLSEEEARKRIWLVDSKGLLTDDRE-DL 78 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCT-TS-HHHHHTTEEEEETTEEEBTTTS-SH
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHh-cCCHHHHhccEEEEeccceEeccCc-cC
Confidence 799999999999999999999999999999999999999999999999985 9999999999999999999999994 59
Q ss_pred chhchhhhcccCCC---CCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc
Q 007112 413 QHFKKPWAHEHAPI---KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWS 489 (617)
Q Consensus 413 ~~~k~~fA~~~~~~---~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT 489 (617)
+++|++|||+..+. .+|+|+|+++|||||||+|+++|+||||+||+|+++|||||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t 158 (255)
T PF03949_consen 79 NPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWT 158 (255)
T ss_dssp SHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTT
T ss_pred ChhhhhhhccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhC
Confidence 99999999987665 499999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEeeCCCCCcceeCCeeeccCCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHHHhccCcccCCCCCccCCCCC
Q 007112 490 KGQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQVTQEHFDKGLIYPPFTN 569 (617)
Q Consensus 490 ~GraifASGSPF~pv~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~~~~~~g~l~P~~~~ 569 (617)
+|+|||||||||+||+|+||+|+||||||+|||||||||+++++|++|||+||++||++||++++++++..|.|||++++
T Consensus 159 ~g~ai~AtGSpf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~aLA~~v~~~~~~~~~l~P~~~~ 238 (255)
T PF03949_consen 159 DGRAIFATGSPFPPVEYNGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFLAAAEALADLVSEEELAPGRLYPPLFD 238 (255)
T ss_dssp TSEEEEEESS----EEETSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHHHHHHHHHHTSSHHHHHTTBSS-SGGG
T ss_pred CceEEEecCCccCCeeeCCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHHHHHHHHHHhCCcccCCCCcccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHH
Q 007112 570 IRKISAHIAAKVAAKAY 586 (617)
Q Consensus 570 ir~vs~~VA~aVa~~A~ 586 (617)
+|+||.+||.+|+++||
T Consensus 239 ir~vs~~VA~aVa~~Ai 255 (255)
T PF03949_consen 239 IREVSARVAAAVAKQAI 255 (255)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhC
Confidence 99999999999999996
No 11
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=1.2e-93 Score=722.25 Aligned_cols=251 Identities=52% Similarity=0.796 Sum_probs=245.5
Q ss_pred ccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCC
Q 007112 333 IQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESL 412 (617)
Q Consensus 333 iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L 412 (617)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|++ +|+|+||||+|||+||++|||+++|.+ |
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~-~Gls~e~A~~~i~~vD~~Gll~~~r~~-l 78 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVK-EGISKEEACKRIWXVDRKGLLVKNRKE-T 78 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHh-cCCCHHHHhccEEEECCCCeEeCCCCc-c
Confidence 79999999999999999999999999999999999999999999999987 499999999999999999999999965 9
Q ss_pred chhchh---hhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc
Q 007112 413 QHFKKP---WAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWS 489 (617)
Q Consensus 413 ~~~k~~---fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT 489 (617)
.++|++ |+++.++..+|+|+|+.+|||||||+|+++|+||||+||+|+++|+|||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t 158 (254)
T cd00762 79 CPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTAT 158 (254)
T ss_pred CHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhc
Confidence 999999 88887778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEeeCCCCCcceeCCeeeccCCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHHHhccCcccCCCCCccCCCCC
Q 007112 490 KGQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQVTQEHFDKGLIYPPFTN 569 (617)
Q Consensus 490 ~GraifASGSPF~pv~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~~~~~~g~l~P~~~~ 569 (617)
+|||||||||||+||+||||+|+|+||||+|||||||||+++++|++|||+||++||++||++++++++.++.|||++++
T Consensus 159 ~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~~~~l~~~~i~P~~~~ 238 (254)
T cd00762 159 EGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTEESLKPGRLYPPLFD 238 (254)
T ss_pred CCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCChhcCCCCceeCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHH
Q 007112 570 IRKISAHIAAKVAAKA 585 (617)
Q Consensus 570 ir~vs~~VA~aVa~~A 585 (617)
||+||.+||.+|+++|
T Consensus 239 ir~vs~~VA~aVa~~a 254 (254)
T cd00762 239 IQEVSLNIAVAVAKYA 254 (254)
T ss_pred hhhHHHHHHHHHHHhC
Confidence 9999999999999875
No 12
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=1.9e-84 Score=626.72 Aligned_cols=182 Identities=65% Similarity=1.211 Sum_probs=164.3
Q ss_pred HhhhhhhhHHHhhcCccccCCcccchhhHHHHHHHhhhhcCCCcccccccccccHHHHHhcCCCCCeeEEEEecCceeec
Q 007112 142 QERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDGERILG 221 (617)
Q Consensus 142 ~~rNe~LFY~ll~~~~ee~lPivYTPtVG~ac~~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILG 221 (617)
|++||+|||++|.+|+||+||||||||||+|||+||++|++|+|||+|++|+|+|+++|+|||.++|++|||||||||||
T Consensus 1 q~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILG 80 (182)
T PF00390_consen 1 QDRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILG 80 (182)
T ss_dssp HTTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTT
T ss_pred CCccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccchhhhHHHHhhhcCCCCCceeeEEeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhcCC
Q 007112 222 LGDLGCQGMGIPVGKLSLYTALGGLRPSACLPITIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGE 301 (617)
Q Consensus 222 LGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~DplYlG~r~~R~~g~eY~~fidefv~av~~~fGp 301 (617)
|||+|++|||||+||++|||+||||||++|||||||||||||+||+||+|+|+||+|++|++|++|+||||+||+++|||
T Consensus 81 lGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp 160 (182)
T PF00390_consen 81 LGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGP 160 (182)
T ss_dssp TBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGC
T ss_pred ccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeeecCCCCcHHHHHHHHc
Q 007112 302 KVLIQFEDFANHNAFELLSKYS 323 (617)
Q Consensus 302 ~~lIqfEDf~~~~Af~lL~ryr 323 (617)
+++||||||+++|||++|+|||
T Consensus 161 ~~~IqfEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 161 NALIQFEDFSNPNAFRILDKYR 182 (182)
T ss_dssp TSEEEE-S--CCHHHHHHHHHT
T ss_pred CeEEEEecCCChhHHHHHHhcC
Confidence 9999999999999999999997
No 13
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=100.00 E-value=1.3e-58 Score=460.27 Aligned_cols=223 Identities=37% Similarity=0.516 Sum_probs=207.9
Q ss_pred ccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCC
Q 007112 333 IQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESL 412 (617)
Q Consensus 333 iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L 412 (617)
+||||+|++||+++|++..|.+++|+||||+|||+||.|||++|.. .|++ +++||++|++||++.+|.+.|
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~-----~G~~----~~~i~ivdr~gl~~~~r~~~L 71 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLA-----AGAK----PENIVVVDSKGVIYEGREDDL 71 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHH-----cCcC----cceEEEEeCCCccccccchhh
Confidence 6999999999999999999999999999999999999999999975 3886 679999999999999997669
Q ss_pred chhchhhhccc--CCC-CCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc
Q 007112 413 QHFKKPWAHEH--API-KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWS 489 (617)
Q Consensus 413 ~~~k~~fA~~~--~~~-~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT 489 (617)
.++|++|+++. .+. .+|.|++++ ||+|||+|+ +|+||+++++.|+ ++||||+||||+ +||++++|++|
T Consensus 72 ~~~~~~la~~~~~~~~~~~l~~~l~~--~dvlIgaT~-~G~~~~~~l~~m~---~~~ivf~lsnP~--~e~~~~~A~~~- 142 (226)
T cd05311 72 NPDKNEIAKETNPEKTGGTLKEALKG--ADVFIGVSR-PGVVKKEMIKKMA---KDPIVFALANPV--PEIWPEEAKEA- 142 (226)
T ss_pred hHHHHHHHHHhccCcccCCHHHHHhc--CCEEEeCCC-CCCCCHHHHHhhC---CCCEEEEeCCCC--CcCCHHHHHHc-
Confidence 99999999864 223 379899986 999999999 8899999999996 899999999999 89999999999
Q ss_pred cCcEEEeeCCCCCcceeCCeeeccCCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHHHhccCcccCCCCCccCCCCC
Q 007112 490 KGQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQVTQEHFDKGLIYPPFTN 569 (617)
Q Consensus 490 ~GraifASGSPF~pv~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~~~~~~g~l~P~~~~ 569 (617)
|..||+|| +++.|+|+||+|||||||||++++++++|||+||++||++||++++++++..|.|||++++
T Consensus 143 -ga~i~a~G----------~~~~~~Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~~~~~~~~~~P~~~~ 211 (226)
T cd05311 143 -GADIVATG----------RSDFPNQVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEEVLGEEYIIPTPFD 211 (226)
T ss_pred -CCcEEEeC----------CCCCccccceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCccccCCCcccCCCCc
Confidence 55599999 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHH
Q 007112 570 IRKISAHIAAKVAAKA 585 (617)
Q Consensus 570 ir~vs~~VA~aVa~~A 585 (617)
|+||..||.+|+++|
T Consensus 212 -~~~~~~va~~v~~~a 226 (226)
T cd05311 212 -PRVVPRVATAVAKAA 226 (226)
T ss_pred -hhHHHHHHHHHHHhC
Confidence 999999999999875
No 14
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.86 E-value=2.9e-08 Score=85.01 Aligned_cols=86 Identities=37% Similarity=0.486 Sum_probs=76.2
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCch
Q 007112 335 GTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 414 (617)
Q Consensus 335 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~ 414 (617)
+||.++++++..+.+..+.+++..+++++|+|.+|.+++..+.+. | -++++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~-----~------~~~v~v~~r-------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADE-----G------GKKVVLCDR-------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHc-----C------CCEEEEEcC--------------
Confidence 699999999999999999999999999999999999999998763 3 257999988
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 007112 415 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALS 472 (617)
Q Consensus 415 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 472 (617)
|+||++++.++.|+++ .|+..++.|+||.++
T Consensus 56 ------------------------di~i~~~~~~~~~~~~---~~~~~~~~~~v~~~a 86 (86)
T cd05191 56 ------------------------DILVTATPAGVPVLEE---ATAKINEGAVVIDLA 86 (86)
T ss_pred ------------------------CEEEEcCCCCCCchHH---HHHhcCCCCEEEecC
Confidence 9999999999999888 555557999999875
No 15
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.65 E-value=0.0051 Score=68.03 Aligned_cols=160 Identities=18% Similarity=0.268 Sum_probs=104.9
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCCCeeeeeecCCCCcHHHH---------------------HHHHc-------CCCcee
Q 007112 278 RATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAFEL---------------------LSKYS-------SSHLVF 329 (617)
Q Consensus 278 R~~g~eY~~fidefv~av~~~fGp~~lIqfEDf~~~~Af~l---------------------L~ryr-------~~~~~F 329 (617)
..+-++|...+++.+ ..+.|+.+| |.+..-...+ ..||+ -.+|+|
T Consensus 105 ~~~~~ey~~~~~~~l----~~~~p~iii---DdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~ 177 (425)
T PRK05476 105 GETLEEYWECIERAL----DGHGPNMIL---DDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAI 177 (425)
T ss_pred CCCHHHHHHHHHHHh----cCCCCCEEE---ecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCEE
Confidence 346678888777766 345566555 4444333322 13443 369999
Q ss_pred e----------cCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEc
Q 007112 330 N----------DDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVD 399 (617)
Q Consensus 330 N----------DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD 399 (617)
| |...||+--++-|+.. .++..+.+.+++|+|+|..|.++|..+.. .|. +++++|
T Consensus 178 ~vn~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~Gk~VlViG~G~IG~~vA~~lr~-----~Ga-------~ViV~d 242 (425)
T PRK05476 178 NVNDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAGKVVVVAGYGDVGKGCAQRLRG-----LGA-------RVIVTE 242 (425)
T ss_pred ecCCcccCccccccHHHHhhhHHHHHH---hccCCCCCCEEEEECCCHHHHHHHHHHHh-----CCC-------EEEEEc
Confidence 8 6678888777666653 44677899999999999999999988854 252 588888
Q ss_pred cCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007112 400 SKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPT 475 (617)
Q Consensus 400 ~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 475 (617)
.+ ..|. +... ...-...++.++++. .|++|-+++..++|+.+.++.|. ..-|++-.+.+.
T Consensus 243 ~d----p~ra--~~A~-----~~G~~v~~l~eal~~--aDVVI~aTG~~~vI~~~~~~~mK---~GailiNvG~~d 302 (425)
T PRK05476 243 VD----PICA--LQAA-----MDGFRVMTMEEAAEL--GDIFVTATGNKDVITAEHMEAMK---DGAILANIGHFD 302 (425)
T ss_pred CC----chhh--HHHH-----hcCCEecCHHHHHhC--CCEEEECCCCHHHHHHHHHhcCC---CCCEEEEcCCCC
Confidence 64 1121 1111 111123468888875 89999988877788888888885 333555555443
No 16
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.21 E-value=0.0015 Score=71.45 Aligned_cols=121 Identities=22% Similarity=0.352 Sum_probs=82.2
Q ss_pred cchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCc
Q 007112 334 QGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 413 (617)
Q Consensus 334 QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~ 413 (617)
.+..+|+.+++--|.+..| ++.+.+++|+|+|..|..++..+.. .|. .+++++|+.. .| ..
T Consensus 158 ~~~vSv~~~Av~la~~~~~-~l~~~~VlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~rs~----~r---a~ 218 (417)
T TIGR01035 158 AGAVSISSAAVELAERIFG-SLKGKKALLIGAGEMGELVAKHLLR-----KGV------GKILIANRTY----ER---AE 218 (417)
T ss_pred CCCcCHHHHHHHHHHHHhC-CccCCEEEEECChHHHHHHHHHHHH-----CCC------CEEEEEeCCH----HH---HH
Confidence 5666777777766666655 4889999999999999999888854 254 5789888741 22 11
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEeecCCC-CCCCHHHHHHHHcCCCCc-EEEecCCCC
Q 007112 414 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVG-KTFTKEVVEAMASFNEKP-VIFALSNPT 475 (617)
Q Consensus 414 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erP-IIFaLSNPt 475 (617)
...+.+....-...++.+++.. .|++|-+++.+ .+++++.++.+.....+| +|+-+++|.
T Consensus 219 ~la~~~g~~~i~~~~l~~~l~~--aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Pr 280 (417)
T TIGR01035 219 DLAKELGGEAVKFEDLEEYLAE--ADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPR 280 (417)
T ss_pred HHHHHcCCeEeeHHHHHHHHhh--CCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 1111111111122467788875 89999987654 478999999875433366 889999997
No 17
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.05 E-value=0.027 Score=62.82 Aligned_cols=188 Identities=19% Similarity=0.202 Sum_probs=130.1
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCeeeeeecCCCCcHHH---HHHHHcCC---C-ce-------e---ecCccchhHHHH
Q 007112 279 ATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAFE---LLSKYSSS---H-LV-------F---NDDIQGTASVVL 341 (617)
Q Consensus 279 ~~g~eY~~fidefv~av~~~fGp~~lIqfEDf~~~~Af~---lL~ryr~~---~-~~-------F---NDDiQGTaaV~L 341 (617)
.+..|-..|...|+.++.+.+||..=|-=+|++. +... +.+.|+.- . .+ + .+--..||-=+.
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt-~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~ 216 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLV 216 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCC-CHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHH
Confidence 4556888999999999999999988888888874 3332 56777631 1 11 1 123346777778
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEE-ccCCcccCCcccCCchh-----
Q 007112 342 AGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLV-DSKGLIVSSRKESLQHF----- 415 (617)
Q Consensus 342 Agll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lv-D~~GLi~~~R~~~L~~~----- 415 (617)
.++..+++..|.+|++.||+|-|-|..|...|++|.+ .|. +++-+ |++|-|+... .|+..
T Consensus 217 ~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~-----~Ga-------kVVavsDs~G~iyn~~--GLD~~~L~~~ 282 (445)
T PRK09414 217 YFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQ-----LGA-------KVVTCSDSSGYVYDEE--GIDLEKLKEI 282 (445)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEEcCCceEECCC--CCCHHHHHHH
Confidence 8888889999999999999999999999999999954 353 45555 9999999765 34432
Q ss_pred ch-------hhhcc-cCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHh
Q 007112 416 KK-------PWAHE-HAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN-PTSQSECTAEEAY 486 (617)
Q Consensus 416 k~-------~fA~~-~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt~~aEct~edA~ 486 (617)
|. .|... ....-+- +.+-.++.||||=+.. ++..|++-...+-. +.-.||.=-+| |+ -+| +++.+
T Consensus 283 k~~~~~~l~~~~~~~~~~~i~~-~~i~~~d~DVliPaAl-~n~It~~~a~~i~~-~~akiIvEgAN~p~-t~~--A~~~L 356 (445)
T PRK09414 283 KEVRRGRISEYAEEFGAEYLEG-GSPWSVPCDIALPCAT-QNELDEEDAKTLIA-NGVKAVAEGANMPS-TPE--AIEVF 356 (445)
T ss_pred HHhcCCchhhhhhhcCCeecCC-ccccccCCcEEEecCC-cCcCCHHHHHHHHH-cCCeEEEcCCCCCC-CHH--HHHHH
Confidence 11 12110 0001112 2344568999996665 77999999998853 45789999998 76 233 44555
Q ss_pred c
Q 007112 487 T 487 (617)
Q Consensus 487 ~ 487 (617)
.
T Consensus 357 ~ 357 (445)
T PRK09414 357 L 357 (445)
T ss_pred H
Confidence 4
No 18
>PLN02477 glutamate dehydrogenase
Probab=97.04 E-value=0.017 Score=63.78 Aligned_cols=185 Identities=23% Similarity=0.263 Sum_probs=127.6
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCeeeeeecCCCCcHHH---HHHHHcC----CCcee----------ecCccchhHHHH
Q 007112 279 ATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAFE---LLSKYSS----SHLVF----------NDDIQGTASVVL 341 (617)
Q Consensus 279 ~~g~eY~~fidefv~av~~~fGp~~lIqfEDf~~~~Af~---lL~ryr~----~~~~F----------NDDiQGTaaV~L 341 (617)
.+..|-..|...|+.++.+.-||..=|-=+|.+.. ..+ +.+.|+. .-.|+ .+--.-||-=+.
T Consensus 112 ~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~-~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~ 190 (410)
T PLN02477 112 LSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTN-AQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVV 190 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCC-HHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHH
Confidence 45678889999999999999999655666777653 222 4567753 11111 223345887788
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEE-EEccCCcccCCcccCCchhch-hh
Q 007112 342 AGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIW-LVDSKGLIVSSRKESLQHFKK-PW 419 (617)
Q Consensus 342 Agll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~-lvD~~GLi~~~R~~~L~~~k~-~f 419 (617)
.++-.+++..|.+|++.||+|.|-|..|.+.|++|.+. |. +|. +.|++|-|+... .|+..+. .+
T Consensus 191 ~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~-----Ga-------kVVaVsD~~G~iy~~~--GLD~~~L~~~ 256 (410)
T PLN02477 191 FATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEK-----GG-------KIVAVSDITGAVKNEN--GLDIPALRKH 256 (410)
T ss_pred HHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHc-----CC-------EEEEEECCCCeEECCC--CCCHHHHHHH
Confidence 88888999999999999999999999999999988653 53 566 899999999865 3543221 11
Q ss_pred hcccCCC--------CCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHhc
Q 007112 420 AHEHAPI--------KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN-PTSQSECTAEEAYT 487 (617)
Q Consensus 420 A~~~~~~--------~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt~~aEct~edA~~ 487 (617)
.+....+ -+-.+.+. .+.||||=+. .++..|++.+..+ .-.||.--+| |+ -+| +++.++
T Consensus 257 k~~~g~l~~~~~a~~i~~~e~l~-~~~DvliP~A-l~~~I~~~na~~i----~ak~I~egAN~p~-t~e--a~~~L~ 324 (410)
T PLN02477 257 VAEGGGLKGFPGGDPIDPDDILV-EPCDVLIPAA-LGGVINKENAADV----KAKFIVEAANHPT-DPE--ADEILR 324 (410)
T ss_pred HHhcCchhccccceEecCcccee-ccccEEeecc-ccccCCHhHHHHc----CCcEEEeCCCCCC-CHH--HHHHHH
Confidence 1110000 12223333 4889999655 5679999999987 6889999999 65 344 445554
No 19
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.95 E-value=0.0044 Score=65.14 Aligned_cols=137 Identities=20% Similarity=0.331 Sum_probs=86.7
Q ss_pred CcHHHHHHHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhc
Q 007112 313 HNAFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEAR 392 (617)
Q Consensus 313 ~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr 392 (617)
.+|+++=++.|.+.-+. .+-.+|+.+++-.|....|. +.+.+|+|+|+|..|..++..+.. .|.
T Consensus 139 ~~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~-----~g~------ 202 (311)
T cd05213 139 QKAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAA-----KGV------ 202 (311)
T ss_pred HHHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHH-----cCC------
Confidence 46777777777654444 34456666666656555554 889999999999999998888864 142
Q ss_pred CeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCC--CCcEEEe
Q 007112 393 KKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFN--EKPVIFA 470 (617)
Q Consensus 393 ~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~--erPIIFa 470 (617)
++|+++|+. ..| .....+.|-.......++.++++. .|++|-+++.+.. +++++.+.+.. ..-+|+=
T Consensus 203 ~~V~v~~r~----~~r---a~~la~~~g~~~~~~~~~~~~l~~--aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viD 271 (311)
T cd05213 203 AEITIANRT----YER---AEELAKELGGNAVPLDELLELLNE--ADVVISATGAPHY--AKIVERAMKKRSGKPRLIVD 271 (311)
T ss_pred CEEEEEeCC----HHH---HHHHHHHcCCeEEeHHHHHHHHhc--CCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEE
Confidence 679999874 222 111222221111112357788876 8999999887754 66666653222 2347778
Q ss_pred cCCCCC
Q 007112 471 LSNPTS 476 (617)
Q Consensus 471 LSNPt~ 476 (617)
||||-.
T Consensus 272 lavPrd 277 (311)
T cd05213 272 LAVPRD 277 (311)
T ss_pred eCCCCC
Confidence 999863
No 20
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.91 E-value=0.017 Score=63.79 Aligned_cols=129 Identities=18% Similarity=0.249 Sum_probs=93.3
Q ss_pred CCceee----------cCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCe
Q 007112 325 SHLVFN----------DDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKK 394 (617)
Q Consensus 325 ~~~~FN----------DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~ 394 (617)
.+|+|+ |...||+--++-+++ |.++..+.+.+++|+|+|..|.++|..+.. .|. +
T Consensus 163 ~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~---r~t~~~l~GktVvViG~G~IG~~va~~ak~-----~Ga-------~ 227 (413)
T cd00401 163 KFPAINVNDSVTKSKFDNLYGCRESLIDGIK---RATDVMIAGKVAVVAGYGDVGKGCAQSLRG-----QGA-------R 227 (413)
T ss_pred CCCEEEecchhhcccccccchhchhhHHHHH---HhcCCCCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 678875 667899998887776 566788999999999999999999987754 362 4
Q ss_pred EEEEccCCcccCCcccCCchhchhhhcc-cCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007112 395 IWLVDSKGLIVSSRKESLQHFKKPWAHE-HAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN 473 (617)
Q Consensus 395 i~lvD~~GLi~~~R~~~L~~~k~~fA~~-~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN 473 (617)
++++|.+ ..| ..+|+. .-...++.|+++. .|++|-+++..++|+++.++.|. ..-+|.-.+.
T Consensus 228 ViV~d~d----~~R--------~~~A~~~G~~~~~~~e~v~~--aDVVI~atG~~~~i~~~~l~~mk---~GgilvnvG~ 290 (413)
T cd00401 228 VIVTEVD----PIC--------ALQAAMEGYEVMTMEEAVKE--GDIFVTTTGNKDIITGEHFEQMK---DGAIVCNIGH 290 (413)
T ss_pred EEEEECC----hhh--------HHHHHhcCCEEccHHHHHcC--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEeCC
Confidence 7777763 222 223332 1112246788865 79999999888889998888885 4557766776
Q ss_pred CCCCCCCCHHHHhc
Q 007112 474 PTSQSECTAEEAYT 487 (617)
Q Consensus 474 Pt~~aEct~edA~~ 487 (617)
+. .|+...+...
T Consensus 291 ~~--~eId~~~L~~ 302 (413)
T cd00401 291 FD--VEIDVKGLKE 302 (413)
T ss_pred CC--CccCHHHHHh
Confidence 63 7888887654
No 21
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.88 E-value=0.012 Score=59.31 Aligned_cols=130 Identities=21% Similarity=0.250 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchh
Q 007112 336 TASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 415 (617)
Q Consensus 336 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~ 415 (617)
||-=+..++-.+++..+.+|++.||+|.|-|..|.++|++|.+. |. +-+.+.|++|-++.. . |+..
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~-----G~------~vV~vsD~~g~i~~~-G--ld~~ 67 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEE-----GG------KVLAVSDPDGYIYDP-G--ITTE 67 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEEcCCCcEECC-C--CCHH
Confidence 45556677788889999999999999999999999999999763 53 678899999988876 3 4332
Q ss_pred -chhhhcccCCCCCH-------HHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHh
Q 007112 416 -KKPWAHEHAPIKSL-------LDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN-PTSQSECTAEEAY 486 (617)
Q Consensus 416 -k~~fA~~~~~~~~L-------~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt~~aEct~edA~ 486 (617)
...++++....... .+.+-.++.||||=++. ++..|++..+.+ .-++|..-+| |++. .+++.+
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~-~~~i~~~~a~~l----~a~~V~e~AN~p~t~---~a~~~L 139 (217)
T cd05211 68 ELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAPCAL-GNVIDLENAKKL----KAKVVAEGANNPTTD---EALRIL 139 (217)
T ss_pred HHHHHHHhhCCccccCcccccCcccceeccccEEeeccc-cCccChhhHhhc----CccEEEeCCCCCCCH---HHHHHH
Confidence 22222211111100 13344568899997776 569999999988 4789998888 8742 456666
Q ss_pred c
Q 007112 487 T 487 (617)
Q Consensus 487 ~ 487 (617)
+
T Consensus 140 ~ 140 (217)
T cd05211 140 H 140 (217)
T ss_pred H
Confidence 5
No 22
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.86 E-value=0.0041 Score=68.07 Aligned_cols=120 Identities=23% Similarity=0.383 Sum_probs=78.6
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCch
Q 007112 335 GTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 414 (617)
Q Consensus 335 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~ 414 (617)
+..+|+.+++--|.+..| ++.+.+++|+|+|..|..++..+.. .|. ++|+++|+. ..| ...
T Consensus 161 ~~~Sv~~~Av~~a~~~~~-~~~~~~vlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~r~----~~r---a~~ 221 (423)
T PRK00045 161 GAVSVASAAVELAKQIFG-DLSGKKVLVIGAGEMGELVAKHLAE-----KGV------RKITVANRT----LER---AEE 221 (423)
T ss_pred CCcCHHHHHHHHHHHhhC-CccCCEEEEECchHHHHHHHHHHHH-----CCC------CeEEEEeCC----HHH---HHH
Confidence 355666666554444444 6889999999999999999888753 254 679988875 122 111
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEeecCCC-CCCCHHHHHHHHcCC--CCcEEEecCCCC
Q 007112 415 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVG-KTFTKEVVEAMASFN--EKPVIFALSNPT 475 (617)
Q Consensus 415 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~--erPIIFaLSNPt 475 (617)
..+.|........++.+++.. .|++|-+++.+ .+++++.++.+.+.. ...+|+=|++|-
T Consensus 222 la~~~g~~~~~~~~~~~~l~~--aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Pr 283 (423)
T PRK00045 222 LAEEFGGEAIPLDELPEALAE--ADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPR 283 (423)
T ss_pred HHHHcCCcEeeHHHHHHHhcc--CCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCC
Confidence 112221111112456677764 89999988765 478999999875322 335888999997
No 23
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.85 E-value=0.017 Score=63.55 Aligned_cols=127 Identities=20% Similarity=0.266 Sum_probs=87.6
Q ss_pred CCceee----------cCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCe
Q 007112 325 SHLVFN----------DDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKK 394 (617)
Q Consensus 325 ~~~~FN----------DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~ 394 (617)
.+|+|| |...||+--++-+++ |.++..+.+.+++|+|+|..|.++|..+.. .|. +
T Consensus 156 ~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~-----~Ga-------~ 220 (406)
T TIGR00936 156 KFPAINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNLLIAGKTVVVAGYGWCGKGIAMRARG-----MGA-------R 220 (406)
T ss_pred CCcEEEecchhhchhhhcccccchhHHHHHH---HhcCCCCCcCEEEEECCCHHHHHHHHHHhh-----CcC-------E
Confidence 788886 667899977766654 567778999999999999999999987753 252 5
Q ss_pred EEEEccCCcccCCcccCCchhchhhhc-ccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007112 395 IWLVDSKGLIVSSRKESLQHFKKPWAH-EHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN 473 (617)
Q Consensus 395 i~lvD~~GLi~~~R~~~L~~~k~~fA~-~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN 473 (617)
++++|.+- .|. + .|+ +.....++.|+++. .|++|-+++..++++++.+..|. +.-||.-.+-
T Consensus 221 ViV~d~dp----~r~--~------~A~~~G~~v~~leeal~~--aDVVItaTG~~~vI~~~~~~~mK---~GailiN~G~ 283 (406)
T TIGR00936 221 VIVTEVDP----IRA--L------EAAMDGFRVMTMEEAAKI--GDIFITATGNKDVIRGEHFENMK---DGAIVANIGH 283 (406)
T ss_pred EEEEeCCh----hhH--H------HHHhcCCEeCCHHHHHhc--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEECC
Confidence 88887642 111 1 111 11122357788875 89999888877788888888885 4557766666
Q ss_pred CCCCCCCCHHHH
Q 007112 474 PTSQSECTAEEA 485 (617)
Q Consensus 474 Pt~~aEct~edA 485 (617)
.. .|+.-++.
T Consensus 284 ~~--~eId~~aL 293 (406)
T TIGR00936 284 FD--VEIDVKAL 293 (406)
T ss_pred CC--ceeCHHHH
Confidence 54 55555444
No 24
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.76 E-value=0.051 Score=60.58 Aligned_cols=182 Identities=15% Similarity=0.137 Sum_probs=123.4
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCeeeeeecCCCCcHH--HHHHHHcC---C-Ccee----------ecCccchhHHHHH
Q 007112 279 ATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAF--ELLSKYSS---S-HLVF----------NDDIQGTASVVLA 342 (617)
Q Consensus 279 ~~g~eY~~fidefv~av~~~fGp~~lIqfEDf~~~~Af--~lL~ryr~---~-~~~F----------NDDiQGTaaV~LA 342 (617)
.+-.|...|.-.||..+...+||+.-|-=+|++..-.- -+.+.|+. . .-+| .+--..||-=+.-
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~ 213 (444)
T PRK14031 134 KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIY 213 (444)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHH
Confidence 45677889999999999999999998989998763322 26667753 1 1233 2334568877888
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc
Q 007112 343 GILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE 422 (617)
Q Consensus 343 gll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~ 422 (617)
++-.+++..|.+|+++||+|-|.|..|...|+.|.+. |. +=+-+.|++|-|+... .|+..+..|-.+
T Consensus 214 ~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~-----GA------kVVaVSD~~G~iy~~~--Gld~~~l~~~~~ 280 (444)
T PRK14031 214 FLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLEL-----GG------KVVTMSDSDGYIYDPD--GIDREKLDYIME 280 (444)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC--CCCHHHHHHHHH
Confidence 8888999999999999999999999999999998753 63 3355699999888654 465544332111
Q ss_pred cCC--CCCHHH-------------HHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 007112 423 HAP--IKSLLD-------------AVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN-PT 475 (617)
Q Consensus 423 ~~~--~~~L~e-------------aV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt 475 (617)
... .+++.+ .+-.++.|+||=+.. .+..|++.++.+.... .-+|.--+| |+
T Consensus 281 ~k~~~~~~v~~~~~~~ga~~i~~d~~~~~~cDIliPaAl-~n~I~~~na~~l~a~g-~~~V~EgAN~P~ 347 (444)
T PRK14031 281 LKNLYRGRIREYAEKYGCKYVEGARPWGEKGDIALPSAT-QNELNGDDARQLVANG-VIAVSEGANMPS 347 (444)
T ss_pred HHhhcCCchhhhHhhcCCEEcCCcccccCCCcEEeeccc-ccccCHHHHHHHHhcC-CeEEECCCCCCC
Confidence 000 011111 111256788885555 5689999998884211 127777777 54
No 25
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.73 E-value=0.012 Score=63.46 Aligned_cols=113 Identities=22% Similarity=0.345 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCch
Q 007112 336 TASVVLAGILSALKLVGGTLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 414 (617)
Q Consensus 336 TaaV~LAgll~Alr~~g~~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~ 414 (617)
|+++...++--|.+..|..|++.+++|.|| |+.|--+|++|... .|. +++++++++ ..| +..
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~----~gv------~~lilv~R~----~~r---l~~ 196 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAK----TGV------AELLLVARQ----QER---LQE 196 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhh----CCC------CEEEEEcCC----HHH---HHH
Confidence 678888889899999999999999999999 89999999888642 232 578888874 222 333
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCC--CCHHHHHHHHcCCCCc-EEEecCCCCC
Q 007112 415 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKT--FTKEVVEAMASFNEKP-VIFALSNPTS 476 (617)
Q Consensus 415 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~--Fteevv~~Ma~~~erP-IIFaLSNPt~ 476 (617)
.+.++.. ....+|.+++.. +|++|=+++.+.. .+++.+ ++| +|+=++.|-.
T Consensus 197 La~el~~--~~i~~l~~~l~~--aDiVv~~ts~~~~~~I~~~~l-------~~~~~viDiAvPRD 250 (340)
T PRK14982 197 LQAELGG--GKILSLEEALPE--ADIVVWVASMPKGVEIDPETL-------KKPCLMIDGGYPKN 250 (340)
T ss_pred HHHHhcc--ccHHhHHHHHcc--CCEEEECCcCCcCCcCCHHHh-------CCCeEEEEecCCCC
Confidence 3333321 223468888876 9999988776433 677655 344 5556898864
No 26
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.66 E-value=0.014 Score=56.82 Aligned_cols=91 Identities=23% Similarity=0.317 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhh
Q 007112 341 LAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPW 419 (617)
Q Consensus 341 LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~f 419 (617)
..+.+-.++....+|++.+++++|+|. .|..+|+.|.. .| .++++++++
T Consensus 28 ~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~-----~g-------~~V~v~~r~------------------ 77 (168)
T cd01080 28 PAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLN-----RN-------ATVTVCHSK------------------ 77 (168)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhh-----CC-------CEEEEEECC------------------
Confidence 333444555556789999999999998 59889888864 24 258888864
Q ss_pred hcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007112 420 AHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPT 475 (617)
Q Consensus 420 A~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 475 (617)
..+|.+.++. .|++|.+++.+.+|+++.++ +.-+|+=++.|-
T Consensus 78 ------~~~l~~~l~~--aDiVIsat~~~~ii~~~~~~------~~~viIDla~pr 119 (168)
T cd01080 78 ------TKNLKEHTKQ--ADIVIVAVGKPGLVKGDMVK------PGAVVIDVGINR 119 (168)
T ss_pred ------chhHHHHHhh--CCEEEEcCCCCceecHHHcc------CCeEEEEccCCC
Confidence 1357788887 99999999998899999764 346788888876
No 27
>PLN02494 adenosylhomocysteinase
Probab=96.65 E-value=0.026 Score=63.36 Aligned_cols=131 Identities=16% Similarity=0.287 Sum_probs=94.0
Q ss_pred CCceee----------cCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCe
Q 007112 325 SHLVFN----------DDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKK 394 (617)
Q Consensus 325 ~~~~FN----------DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~ 394 (617)
.+|++| |...||+--++-|++ |.++..+.+.+++|+|.|..|.++|..+.. .|+ +
T Consensus 215 ~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i~---r~t~i~LaGKtVvViGyG~IGr~vA~~aka-----~Ga-------~ 279 (477)
T PLN02494 215 LFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAGKVAVICGYGDVGKGCAAAMKA-----AGA-------R 279 (477)
T ss_pred CCCEEEEcChhhhhhhhccccccccHHHHHH---HhcCCccCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 677776 446898888877776 667888999999999999999999999853 263 5
Q ss_pred EEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007112 395 IWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNP 474 (617)
Q Consensus 395 i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNP 474 (617)
++++|.+.. |. +.....-| ...++.|+++. .|++|=+++..++++++.++.|. +.-++.-.+.+
T Consensus 280 VIV~e~dp~----r~--~eA~~~G~-----~vv~leEal~~--ADVVI~tTGt~~vI~~e~L~~MK---~GAiLiNvGr~ 343 (477)
T PLN02494 280 VIVTEIDPI----CA--LQALMEGY-----QVLTLEDVVSE--ADIFVTTTGNKDIIMVDHMRKMK---NNAIVCNIGHF 343 (477)
T ss_pred EEEEeCCch----hh--HHHHhcCC-----eeccHHHHHhh--CCEEEECCCCccchHHHHHhcCC---CCCEEEEcCCC
Confidence 887876421 10 11111111 12368888876 89999877777788999999985 66688878876
Q ss_pred CCCCCCCHHHHhcc
Q 007112 475 TSQSECTAEEAYTW 488 (617)
Q Consensus 475 t~~aEct~edA~~w 488 (617)
. .|+.-++..++
T Consensus 344 ~--~eID~~aL~~~ 355 (477)
T PLN02494 344 D--NEIDMLGLETY 355 (477)
T ss_pred C--CccCHHHHhhc
Confidence 5 77777766654
No 28
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.57 E-value=0.0028 Score=58.77 Aligned_cols=102 Identities=22% Similarity=0.392 Sum_probs=67.7
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc---cCCCCCH
Q 007112 353 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE---HAPIKSL 429 (617)
Q Consensus 353 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~---~~~~~~L 429 (617)
.++++.|++++|||.+|-+++..|... |. ++|+++++. .+| .....+.|... ..+..++
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~-----g~------~~i~i~nRt----~~r---a~~l~~~~~~~~~~~~~~~~~ 69 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAAL-----GA------KEITIVNRT----PER---AEALAEEFGGVNIEAIPLEDL 69 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHT-----TS------SEEEEEESS----HHH---HHHHHHHHTGCSEEEEEGGGH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHc-----CC------CEEEEEECC----HHH---HHHHHHHcCccccceeeHHHH
Confidence 389999999999999998888887653 64 789999974 333 22333333110 1123456
Q ss_pred HHHHhccCCcEEEeecCCCC-CCCHHHHHHHHcCCCCcEEEecCCCCC
Q 007112 430 LDAVKAIKPTMLMGTSGVGK-TFTKEVVEAMASFNEKPVIFALSNPTS 476 (617)
Q Consensus 430 ~eaV~~vkPtvLIG~S~~~g-~Fteevv~~Ma~~~erPIIFaLSNPt~ 476 (617)
.+.++. .|++|-+++.+. .++++.++..... ..+||=||+|-.
T Consensus 70 ~~~~~~--~DivI~aT~~~~~~i~~~~~~~~~~~--~~~v~Dla~Pr~ 113 (135)
T PF01488_consen 70 EEALQE--ADIVINATPSGMPIITEEMLKKASKK--LRLVIDLAVPRD 113 (135)
T ss_dssp CHHHHT--ESEEEE-SSTTSTSSTHHHHTTTCHH--CSEEEES-SS-S
T ss_pred HHHHhh--CCeEEEecCCCCcccCHHHHHHHHhh--hhceeccccCCC
Confidence 677776 999999988763 7888887654211 249999999964
No 29
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.55 E-value=0.02 Score=59.90 Aligned_cols=138 Identities=19% Similarity=0.263 Sum_probs=91.1
Q ss_pred cchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCc
Q 007112 334 QGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 413 (617)
Q Consensus 334 QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~ 413 (617)
..+.+++=.++.-+++..+..|.+.+++|+|+|.+|..+|+.+... |. +++++|++. .+ +.
T Consensus 128 ~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~-----G~-------~V~v~~R~~----~~---~~ 188 (287)
T TIGR02853 128 YNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSAL-----GA-------RVFVGARSS----AD---LA 188 (287)
T ss_pred EccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHC-----CC-------EEEEEeCCH----HH---HH
Confidence 4455666666777788888899999999999999999999998642 52 588888751 11 11
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcE
Q 007112 414 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQA 493 (617)
Q Consensus 414 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~Gra 493 (617)
..+ .+....-...+|.+.+++ .|++|=+. ..+.++++.++.|. +.-+|+=+|..- -++.++.|-+ -+-++
T Consensus 189 ~~~-~~g~~~~~~~~l~~~l~~--aDiVint~-P~~ii~~~~l~~~k---~~aliIDlas~P--g~tdf~~Ak~-~G~~a 258 (287)
T TIGR02853 189 RIT-EMGLIPFPLNKLEEKVAE--IDIVINTI-PALVLTADVLSKLP---KHAVIIDLASKP--GGTDFEYAKK-RGIKA 258 (287)
T ss_pred HHH-HCCCeeecHHHHHHHhcc--CCEEEECC-ChHHhCHHHHhcCC---CCeEEEEeCcCC--CCCCHHHHHH-CCCEE
Confidence 111 000011122457777775 89999654 34578999998885 456888776532 4566655544 34478
Q ss_pred EEeeCCC
Q 007112 494 IFASGSP 500 (617)
Q Consensus 494 ifASGSP 500 (617)
+.+-|-|
T Consensus 259 ~~~~glP 265 (287)
T TIGR02853 259 LLAPGLP 265 (287)
T ss_pred EEeCCCC
Confidence 8888865
No 30
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.53 E-value=0.15 Score=57.13 Aligned_cols=181 Identities=18% Similarity=0.209 Sum_probs=126.1
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCeeeeeecCCCCcHHH---HHHHHcC---CC-ceeec----------CccchhHHHH
Q 007112 279 ATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAFE---LLSKYSS---SH-LVFND----------DIQGTASVVL 341 (617)
Q Consensus 279 ~~g~eY~~fidefv~av~~~fGp~~lIqfEDf~~~~Af~---lL~ryr~---~~-~~FND----------DiQGTaaV~L 341 (617)
.+..|-..|...||..+.+..||+.=|-=.|++. ++.+ +.+.|+. .+ .|+-. --..||-=+.
T Consensus 143 ~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt-~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~ 221 (454)
T PTZ00079 143 KSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLV 221 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCC-CHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHH
Confidence 4566778999999999999999999999999984 3333 4555542 21 22211 1224777778
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEE-EEccCCcccCCcccCCchhchhhh
Q 007112 342 AGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIW-LVDSKGLIVSSRKESLQHFKKPWA 420 (617)
Q Consensus 342 Agll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~-lvD~~GLi~~~R~~~L~~~k~~fA 420 (617)
.++-.+++..|.+|++.|++|-|.|..|...|+.|.+. |. +++ +.|++|-|+... .|+..+..+.
T Consensus 222 ~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~-----Ga-------kVVavSD~~G~iy~~~--Gld~~~l~~l 287 (454)
T PTZ00079 222 YFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQL-----GA-------KVLTMSDSDGYIHEPN--GFTKEKLAYL 287 (454)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEEcCCCcEECCC--CCCHHHHHHH
Confidence 88889999999999999999999999999999998653 63 455 999999999875 4654332111
Q ss_pred ccc--CCCCCHHH--------------HHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCC
Q 007112 421 HEH--APIKSLLD--------------AVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN-PTS 476 (617)
Q Consensus 421 ~~~--~~~~~L~e--------------aV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt~ 476 (617)
.+. ...+++.+ .+-.++.||||=+.. .+..|++-++.+-+ +.-.+|.=-+| |++
T Consensus 288 ~~~k~~~~g~i~~~~~~~~~a~~~~~~~~~~~~cDI~iPcA~-~n~I~~~~a~~l~~-~~ak~V~EgAN~p~t 358 (454)
T PTZ00079 288 MDLKNVKRGRLKEYAKHSSTAKYVPGKKPWEVPCDIAFPCAT-QNEINLEDAKLLIK-NGCKLVAEGANMPTT 358 (454)
T ss_pred HHHHhhcCCcHHhhhhccCCcEEeCCcCcccCCccEEEeccc-cccCCHHHHHHHHH-cCCeEEEecCCCCCC
Confidence 100 00011111 122367899997776 56999999998843 34568888888 663
No 31
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.38 E-value=0.15 Score=57.01 Aligned_cols=189 Identities=16% Similarity=0.151 Sum_probs=129.6
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCeeeeeecCCCCcHHH---HHHHHcC----CCceeec---Cc-------cchhHHHH
Q 007112 279 ATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAFE---LLSKYSS----SHLVFND---DI-------QGTASVVL 341 (617)
Q Consensus 279 ~~g~eY~~fidefv~av~~~fGp~~lIqfEDf~~~~Af~---lL~ryr~----~~~~FND---Di-------QGTaaV~L 341 (617)
.+..|-..|.-.||..+.+-.||+.=|-=.|++. ++.+ +++.|+. ...++.- +. ..||-=+.
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt-~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~ 212 (445)
T PRK14030 134 KSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGV-GGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGAL 212 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccccccCC-CHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHH
Confidence 4556888999999999998889988888888874 3433 5566653 2223211 12 23888888
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchh---
Q 007112 342 AGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKP--- 418 (617)
Q Consensus 342 Agll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~--- 418 (617)
.++-.+++..|.+|++.||+|-|-|..|...|+.|.+. |. +=+-+-|++|-|+... .|+..+..
T Consensus 213 ~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~-----Ga------kvVavSD~~G~i~d~~--Gld~~~l~~l~ 279 (445)
T PRK14030 213 YFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATEL-----GA------KVVTISGPDGYIYDPD--GISGEKIDYML 279 (445)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceEECCC--CCCHHHHHHHH
Confidence 88889999999999999999999999999999998653 64 4567789999998754 35543311
Q ss_pred ------------hhcccCCCC--CHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHH
Q 007112 419 ------------WAHEHAPIK--SLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN-PTSQSECTAE 483 (617)
Q Consensus 419 ------------fA~~~~~~~--~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt~~aEct~e 483 (617)
++...+..+ +-.+ +-.++.||||=+.. ++..|++.++.+.+ +.-.||.=-+| |++ +| ++
T Consensus 280 ~~k~~~~~~~~~~~~~~~ga~~i~~~~-~~~~~cDVliPcAl-~n~I~~~na~~l~~-~~ak~V~EgAN~p~t-~e--A~ 353 (445)
T PRK14030 280 ELRASGNDIVAPYAEKFPGSTFFAGKK-PWEQKVDIALPCAT-QNELNGEDADKLIK-NGVLCVAEVSNMGCT-AE--AI 353 (445)
T ss_pred HHHHhcCccHHHHHhcCCCCEEcCCcc-ceeccccEEeeccc-cccCCHHHHHHHHH-cCCeEEEeCCCCCCC-HH--HH
Confidence 110100100 1112 23467899996665 57999999999853 35678888888 542 33 44
Q ss_pred HHhc
Q 007112 484 EAYT 487 (617)
Q Consensus 484 dA~~ 487 (617)
+.+.
T Consensus 354 ~iL~ 357 (445)
T PRK14030 354 DKFI 357 (445)
T ss_pred HHHH
Confidence 5554
No 32
>PLN00203 glutamyl-tRNA reductase
Probab=96.18 E-value=0.018 Score=65.21 Aligned_cols=201 Identities=17% Similarity=0.262 Sum_probs=115.7
Q ss_pred chhHHHHHHHHHHHHHhCC-CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCc
Q 007112 335 GTASVVLAGILSALKLVGG-TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 413 (617)
Q Consensus 335 GTaaV~LAgll~Alr~~g~-~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~ 413 (617)
|--+|+-+++=-|.+..|. +|.+.+|+|+|||..|..+++.+.. .|. ++|+++++. .+| ..
T Consensus 243 ~~vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~-----~G~------~~V~V~nRs----~er---a~ 304 (519)
T PLN00203 243 GAVSVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVS-----KGC------TKMVVVNRS----EER---VA 304 (519)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHh-----CCC------CeEEEEeCC----HHH---HH
Confidence 4445555666666666664 6999999999999999888887753 363 679998875 222 22
Q ss_pred hhchhhhc---ccCCCCCHHHHHhccCCcEEEeecCCC-CCCCHHHHHHHHcCC---CCc-EEEecCCCCCCCCCCHHHH
Q 007112 414 HFKKPWAH---EHAPIKSLLDAVKAIKPTMLMGTSGVG-KTFTKEVVEAMASFN---EKP-VIFALSNPTSQSECTAEEA 485 (617)
Q Consensus 414 ~~k~~fA~---~~~~~~~L~eaV~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~---erP-IIFaLSNPt~~aEct~edA 485 (617)
.....|-. ...+..++.+++.. .|++|.+++.+ .+|++++++.|-... .+| +|+=||.|-.--.+-.
T Consensus 305 ~La~~~~g~~i~~~~~~dl~~al~~--aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~v~--- 379 (519)
T PLN00203 305 ALREEFPDVEIIYKPLDEMLACAAE--ADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGACVS--- 379 (519)
T ss_pred HHHHHhCCCceEeecHhhHHHHHhc--CCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCccccc---
Confidence 22222210 01123567788875 89999876544 489999999984321 244 5667999963211111
Q ss_pred hccccCcEEEeeCCCCCcceeCCeeeccCCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHH-HhccC--cccCCCCC
Q 007112 486 YTWSKGQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEAL-AAQVT--QEHFDKGL 562 (617)
Q Consensus 486 ~~wT~GraifASGSPF~pv~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aL-A~~v~--~~~~~~g~ 562 (617)
...|+++|===-|-.+......-..+-... |+.+ .+.+. .+.+..-.
T Consensus 380 -----------------------------~l~~v~lydiDdL~~i~~~n~~~R~~~~~~-Ae~II~ee~~~F~~w~~~~~ 429 (519)
T PLN00203 380 -----------------------------ELESARVYNVDDLKEVVAANKEDRLRKAME-AQTIIREESKNFEAWRDSLE 429 (519)
T ss_pred -----------------------------cCCCCeEEEeccHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcc
Confidence 111122221112222332222211211222 2222 11111 11234556
Q ss_pred ccCCCCChhhhHHHHHHHHHHHHHHc
Q 007112 563 IYPPFTNIRKISAHIAAKVAAKAYDL 588 (617)
Q Consensus 563 l~P~~~~ir~vs~~VA~aVa~~A~~~ 588 (617)
+-|-+.++|+-...|..+=.+.+++.
T Consensus 430 ~~p~I~~lr~~~~~i~~~Eler~~~k 455 (519)
T PLN00203 430 TVPTIKKLRSYAERIRAAELEKCLSK 455 (519)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999998888888764
No 33
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.13 E-value=0.022 Score=62.84 Aligned_cols=213 Identities=23% Similarity=0.307 Sum_probs=128.5
Q ss_pred CcHHHHHHHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhc
Q 007112 313 HNAFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEAR 392 (617)
Q Consensus 313 ~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr 392 (617)
..||..=.|.|.+-- . -.|-.+|.-|++--|-++.|. |++.++||+|||..|..+|..|... |+
T Consensus 139 qkAi~~gKrvRseT~-I---~~~~VSi~saAv~lA~~~~~~-L~~~~vlvIGAGem~~lva~~L~~~-----g~------ 202 (414)
T COG0373 139 QKAISVGKRVRSETG-I---GKGAVSISSAAVELAKRIFGS-LKDKKVLVIGAGEMGELVAKHLAEK-----GV------ 202 (414)
T ss_pred HHHHHHHHHhhcccC-C---CCCccchHHHHHHHHHHHhcc-cccCeEEEEcccHHHHHHHHHHHhC-----CC------
Confidence 456666677775311 0 123344555555555666555 9999999999999999999888753 64
Q ss_pred CeEEEEccCCcccCCcccCCchhchhhhccc----CCCCCHHHHHhccCCcEEEee-cCCCCCCCHHHHHHHHcCCCCcE
Q 007112 393 KKIWLVDSKGLIVSSRKESLQHFKKPWAHEH----APIKSLLDAVKAIKPTMLMGT-SGVGKTFTKEVVEAMASFNEKPV 467 (617)
Q Consensus 393 ~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~----~~~~~L~eaV~~vkPtvLIG~-S~~~g~Fteevv~~Ma~~~erPI 467 (617)
++|+++++. ..|. +.+|+.. -....|.+.+.. .||+|-. |++.-+++.+.++.-.+..++=+
T Consensus 203 ~~i~IaNRT----~erA-------~~La~~~~~~~~~l~el~~~l~~--~DvVissTsa~~~ii~~~~ve~a~~~r~~~l 269 (414)
T COG0373 203 KKITIANRT----LERA-------EELAKKLGAEAVALEELLEALAE--ADVVISSTSAPHPIITREMVERALKIRKRLL 269 (414)
T ss_pred CEEEEEcCC----HHHH-------HHHHHHhCCeeecHHHHHHhhhh--CCEEEEecCCCccccCHHHHHHHHhcccCeE
Confidence 789988773 3332 2233321 223466777766 7888755 44556889998887654444459
Q ss_pred EEecCCCCCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCeeeccCCCCcccccchhhHHHHHhCCcccCHHHHHHHHH
Q 007112 468 IFALSNPTSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASE 547 (617)
Q Consensus 468 IFaLSNPt~~aEct~edA~~wT~GraifASGSPF~pv~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~ 547 (617)
||=|+||-.-. + ..+.-||+++|-==-|-.+...-..-..+.. ++|+
T Consensus 270 ivDiavPRdie---------~-----------------------~v~~l~~v~l~~iDDL~~iv~~n~~~R~~~~-~~ae 316 (414)
T COG0373 270 IVDIAVPRDVE---------P-----------------------EVGELPNVFLYTIDDLEEIVEENLEARKEEA-AKAE 316 (414)
T ss_pred EEEecCCCCCC---------c-----------------------cccCcCCeEEEehhhHHHHHHHhHHHHHHHH-HHHH
Confidence 99999998311 1 1234455666654444444333222222222 2222
Q ss_pred HH-----HhccCcccCCCCCccCCCCChhhhHHHHHHHHHHHHHHcC
Q 007112 548 AL-----AAQVTQEHFDKGLIYPPFTNIRKISAHIAAKVAAKAYDLG 589 (617)
Q Consensus 548 aL-----A~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~G 589 (617)
++ +.+. +.+..-.+-|.+.++|+-+..|...-.+.|.+.-
T Consensus 317 ~iIeee~~~~~--~~l~~~~~~~~i~~lr~~a~~v~~~ele~a~~~l 361 (414)
T COG0373 317 AIIEEELAEFM--EWLKKLEVVPTIRALREQAEDVREEELEKALKKL 361 (414)
T ss_pred HHHHHHHHHHH--HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22 2221 1244556889999999888888888888887543
No 34
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.06 E-value=0.053 Score=56.95 Aligned_cols=128 Identities=22% Similarity=0.285 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchh
Q 007112 339 VVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKP 418 (617)
Q Consensus 339 V~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~ 418 (617)
++-+++..|++..+.++.+.|++|+|+|.+|..++..+.. .| -+++++|++ . .+ ..
T Consensus 134 ~aegav~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~-----~G-------a~V~v~~r~---~-~~--------~~ 189 (296)
T PRK08306 134 TAEGAIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKA-----LG-------ANVTVGARK---S-AH--------LA 189 (296)
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHH-----CC-------CEEEEEECC---H-HH--------HH
Confidence 3334566677888889999999999999999999888854 25 268888886 1 11 11
Q ss_pred hhcc----cCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccC-cE
Q 007112 419 WAHE----HAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKG-QA 493 (617)
Q Consensus 419 fA~~----~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~G-ra 493 (617)
+++. .-...+|.+.++. .|++|-++. ...++++.++.|. +.-+|+=++... -.|..+.|.+ .| ++
T Consensus 190 ~~~~~G~~~~~~~~l~~~l~~--aDiVI~t~p-~~~i~~~~l~~~~---~g~vIIDla~~p--ggtd~~~a~~--~Gv~~ 259 (296)
T PRK08306 190 RITEMGLSPFHLSELAEEVGK--IDIIFNTIP-ALVLTKEVLSKMP---PEALIIDLASKP--GGTDFEYAEK--RGIKA 259 (296)
T ss_pred HHHHcCCeeecHHHHHHHhCC--CCEEEECCC-hhhhhHHHHHcCC---CCcEEEEEccCC--CCcCeeehhh--CCeEE
Confidence 1111 0112467788875 999998654 4578999998886 566777565433 2344443332 34 45
Q ss_pred EEeeCCC
Q 007112 494 IFASGSP 500 (617)
Q Consensus 494 ifASGSP 500 (617)
+.++|-|
T Consensus 260 ~~~~~lp 266 (296)
T PRK08306 260 LLAPGLP 266 (296)
T ss_pred EEECCCC
Confidence 5556644
No 35
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.90 E-value=0.045 Score=57.50 Aligned_cols=97 Identities=22% Similarity=0.338 Sum_probs=75.2
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCc
Q 007112 335 GTASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 413 (617)
Q Consensus 335 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~ 413 (617)
+.+-.|-.|++..++..+.+++++++|++|+|- +|-.||.+|.. .| | .+.+|+++
T Consensus 137 ~~~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~-----~g-----a--tVtv~~~~------------ 192 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLN-----AN-----A--TVTICHSR------------ 192 (283)
T ss_pred cccCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-----CC-----C--EEEEEeCC------------
Confidence 446777799999999999999999999999997 99999999864 24 2 68888762
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEec-CCCC
Q 007112 414 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFAL-SNPT 475 (617)
Q Consensus 414 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaL-SNPt 475 (617)
..+|.+.++. .|++|-+.+.++.|+.+.++ +.-+|+=. .||.
T Consensus 193 ------------t~~L~~~~~~--aDIvI~AtG~~~~v~~~~lk------~gavViDvg~n~~ 235 (283)
T PRK14192 193 ------------TQNLPELVKQ--ADIIVGAVGKPELIKKDWIK------QGAVVVDAGFHPR 235 (283)
T ss_pred ------------chhHHHHhcc--CCEEEEccCCCCcCCHHHcC------CCCEEEEEEEeec
Confidence 1246666764 99999999999988988763 44455544 3663
No 36
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.85 E-value=0.14 Score=57.63 Aligned_cols=122 Identities=18% Similarity=0.189 Sum_probs=83.8
Q ss_pred CCceeecCccchhHHH-------HHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEE
Q 007112 325 SHLVFNDDIQGTASVV-------LAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWL 397 (617)
Q Consensus 325 ~~~~FNDDiQGTaaV~-------LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~l 397 (617)
.+|++|=+---|-++. ++.+-+.+|.++..|.+.+++|+|.|..|.++|..+.. .|+ ++++
T Consensus 215 ~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a-----~Ga-------~ViV 282 (476)
T PTZ00075 215 LFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRG-----FGA-------RVVV 282 (476)
T ss_pred CceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEE
Confidence 6888886554444432 44445557788999999999999999999999998864 253 4777
Q ss_pred EccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007112 398 VDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNP 474 (617)
Q Consensus 398 vD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNP 474 (617)
+|++-. +. +.... +.-...++.|+++. .|++|-+.+..++|+++.++.|. +.-|+.-.+..
T Consensus 283 ~e~dp~----~a--~~A~~-----~G~~~~~leell~~--ADIVI~atGt~~iI~~e~~~~MK---pGAiLINvGr~ 343 (476)
T PTZ00075 283 TEIDPI----CA--LQAAM-----EGYQVVTLEDVVET--ADIFVTATGNKDIITLEHMRRMK---NNAIVGNIGHF 343 (476)
T ss_pred EeCCch----hH--HHHHh-----cCceeccHHHHHhc--CCEEEECCCcccccCHHHHhccC---CCcEEEEcCCC
Confidence 766411 10 11100 11122468888876 89999988888899999999996 45566655555
No 37
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=95.73 E-value=0.087 Score=53.59 Aligned_cols=123 Identities=22% Similarity=0.290 Sum_probs=88.9
Q ss_pred cchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCc
Q 007112 334 QGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 413 (617)
Q Consensus 334 QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~ 413 (617)
.-||-=+..++-.+++..+.+|++.||+|.|-|..|-++|++|.+. |. +=+.+.|++|-++... .|+
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~-----g~------~vv~v~D~~g~~~~~~--Gld 74 (227)
T cd01076 8 EATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEA-----GA------KVVAVSDSDGTIYNPD--GLD 74 (227)
T ss_pred ccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC--CCC
Confidence 4577777888888899999999999999999999999999998653 53 3355999999998765 343
Q ss_pred hhch-hhhcccCC------C--CCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 007112 414 HFKK-PWAHEHAP------I--KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN-PT 475 (617)
Q Consensus 414 ~~k~-~fA~~~~~------~--~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt 475 (617)
.... .+.+.... . -+- +.+-..+.||||=++ .+++.|++.+..+ .-++|.--+| |+
T Consensus 75 ~~~l~~~~~~~g~l~~~~~~~~~~~-~~i~~~~~Dvlip~a-~~~~i~~~~~~~l----~a~~I~egAN~~~ 140 (227)
T cd01076 75 VPALLAYKKEHGSVLGFPGAERITN-EELLELDCDILIPAA-LENQITADNADRI----KAKIIVEAANGPT 140 (227)
T ss_pred HHHHHHHHHhcCCcccCCCceecCC-ccceeecccEEEecC-ccCccCHHHHhhc----eeeEEEeCCCCCC
Confidence 3221 11111100 0 112 233445889999777 5779999999998 5889999999 55
No 38
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.65 E-value=0.32 Score=50.31 Aligned_cols=191 Identities=17% Similarity=0.164 Sum_probs=101.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhc-------hhhh----------
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFK-------KPWA---------- 420 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k-------~~fA---------- 420 (617)
.||.|+|+|..|.+||..++.. | .+++++|.+- . .++..+ ..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-----G-------~~V~l~d~~~----~---~l~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-----G-------FDVTIYDISD----E---ALEKAKERIAKLADRYVRDLEATKEAP 64 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCCH----H---HHHHHHHHHHHHHHHHHHcCCCChhhh
Confidence 5899999999999999888642 5 3689998641 1 111111 1110
Q ss_pred -cc----cCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEE
Q 007112 421 -HE----HAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIF 495 (617)
Q Consensus 421 -~~----~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~Graif 495 (617)
.. -....++.++++. .|++|=+-...-.+.+++++.+.+......|++ ||.+++ .+.++.+.++-.-=|
T Consensus 65 ~~~~~~~i~~~~d~~~a~~~--aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~-sntSt~---~~~~~~~~~~~~~r~ 138 (287)
T PRK08293 65 AEAALNRITLTTDLAEAVKD--ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFA-TNSSTL---LPSQFAEATGRPEKF 138 (287)
T ss_pred HHHHHcCeEEeCCHHHHhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEE-ECcccC---CHHHHHhhcCCcccE
Confidence 00 0113578888876 788875433222356777777777666556663 565554 444444433211224
Q ss_pred eeCCCCCcceeCCeeeccCCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHHHhccCcccCCCCC-cc-CCCCChhhh
Q 007112 496 ASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQVTQEHFDKGL-IY-PPFTNIRKI 573 (617)
Q Consensus 496 ASGSPF~pv~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~~~~~~g~-l~-P~~~~ir~v 573 (617)
....||.|+.... ..- +.....-+++.+. .+..+...+- +.. +. |..- --|
T Consensus 139 vg~Hf~~p~~~~~---------lve----------vv~~~~t~~~~~~-~~~~~~~~~G-----k~pv~v~~d~p--gfi 191 (287)
T PRK08293 139 LALHFANEIWKNN---------TAE----------IMGHPGTDPEVFD-TVVAFAKAIG-----MVPIVLKKEQP--GYI 191 (287)
T ss_pred EEEcCCCCCCcCC---------eEE----------EeCCCCCCHHHHH-HHHHHHHHcC-----CeEEEecCCCC--CHh
Confidence 4457877764221 111 2222333555444 4455544432 222 22 2222 245
Q ss_pred HHHHHHHHHHHH---HHcCCCCCCCCchhHHHHH
Q 007112 574 SAHIAAKVAAKA---YDLGLASRLPRPKDLVSYA 604 (617)
Q Consensus 574 s~~VA~aVa~~A---~~~GlA~~~~~p~dl~~~i 604 (617)
..++-.++...| +++|+|+ |+|+....
T Consensus 192 ~nRi~~~~~~ea~~l~~~g~a~----~~~iD~a~ 221 (287)
T PRK08293 192 LNSLLVPFLSAALALWAKGVAD----PETIDKTW 221 (287)
T ss_pred HHHHHHHHHHHHHHHHHcCCCC----HHHHHHHH
Confidence 556666666555 4589885 35554433
No 39
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.61 E-value=0.042 Score=60.62 Aligned_cols=192 Identities=14% Similarity=0.185 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhch
Q 007112 338 SVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKK 417 (617)
Q Consensus 338 aV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~ 417 (617)
+|+-+++=-|.+.. .++++.|++|+|||.+|-.+|..+.. .|. ++|+++++. .+|...| ..
T Consensus 163 Sv~~~Av~la~~~~-~~l~~kkvlviGaG~~a~~va~~L~~-----~g~------~~I~V~nRt----~~ra~~L---a~ 223 (414)
T PRK13940 163 SVAFSAITLAKRQL-DNISSKNVLIIGAGQTGELLFRHVTA-----LAP------KQIMLANRT----IEKAQKI---TS 223 (414)
T ss_pred CHHHHHHHHHHHHh-cCccCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHHHHHH---HH
Confidence 44444444444443 35889999999999999888887753 364 679998885 2332212 22
Q ss_pred hhh-cccCCCCCHHHHHhccCCcEEEeecCCCC-CCCHHHHHHHHcCCCCcE-EEecCCCCCCCCCCHHHHhccccCcEE
Q 007112 418 PWA-HEHAPIKSLLDAVKAIKPTMLMGTSGVGK-TFTKEVVEAMASFNEKPV-IFALSNPTSQSECTAEEAYTWSKGQAI 494 (617)
Q Consensus 418 ~fA-~~~~~~~~L~eaV~~vkPtvLIG~S~~~g-~Fteevv~~Ma~~~erPI-IFaLSNPt~~aEct~edA~~wT~Grai 494 (617)
.|. ....+..+|.+++.. .|++|-+++.+. ++|++.++ .+|. |+=|++|-.--+.
T Consensus 224 ~~~~~~~~~~~~l~~~l~~--aDiVI~aT~a~~~vi~~~~~~------~~~~~~iDLavPRdidp~-------------- 281 (414)
T PRK13940 224 AFRNASAHYLSELPQLIKK--ADIIIAAVNVLEYIVTCKYVG------DKPRVFIDISIPQALDPK-------------- 281 (414)
T ss_pred HhcCCeEecHHHHHHHhcc--CCEEEECcCCCCeeECHHHhC------CCCeEEEEeCCCCCCCcc--------------
Confidence 221 111223567777776 999998877764 67866542 4565 4679999721100
Q ss_pred EeeCCCCCcceeCCeeeccCCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHHHhccC--cccCCCCCccCCCCChhh
Q 007112 495 FASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQVT--QEHFDKGLIYPPFTNIRK 572 (617)
Q Consensus 495 fASGSPF~pv~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~--~~~~~~g~l~P~~~~ir~ 572 (617)
.+...|+++|===-|-.+......-..+....|-+-+...+. .+.+....+-|-+.++|+
T Consensus 282 ------------------v~~l~~v~l~~iDdl~~i~~~n~~~R~~~~~~a~~iI~e~~~~f~~w~~~~~~~p~I~~lr~ 343 (414)
T PRK13940 282 ------------------LGELEQNVYYCVDDINAVIEDNKDKRKYESSKAQKIIVKSLEEYLEKEKAIISNSAIKELFQ 343 (414)
T ss_pred ------------------ccCcCCeEEEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 011122222211112222222111111112222111111111 112345678899999999
Q ss_pred hHHHHHHHHHHHHHHc
Q 007112 573 ISAHIAAKVAAKAYDL 588 (617)
Q Consensus 573 vs~~VA~aVa~~A~~~ 588 (617)
-...|..+-.+.+.+.
T Consensus 344 ~~~~i~~~el~r~~~~ 359 (414)
T PRK13940 344 KADGLVDLSLEKSLAK 359 (414)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8888888888888754
No 40
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.55 E-value=0.26 Score=51.32 Aligned_cols=125 Identities=18% Similarity=0.110 Sum_probs=87.7
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEE-EEccCCcccCCcccCCc
Q 007112 335 GTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIW-LVDSKGLIVSSRKESLQ 413 (617)
Q Consensus 335 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~-lvD~~GLi~~~R~~~L~ 413 (617)
-||-=+.-++-.+++..+.+|++.||+|-|-|..|.+.|++|.+ .|. +++ +.|++|-|+... .|+
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e-----~Ga-------kvvaVsD~~G~i~~~~--Gld 81 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLE-----LGA-------KVVTLSDSKGYVYDPD--GFT 81 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEECCCceEECCC--CCC
Confidence 46666677788888889999999999999999999999999865 263 455 999999998865 354
Q ss_pred hhch---------------hhhcccC--CCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 007112 414 HFKK---------------PWAHEHA--PIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN-PT 475 (617)
Q Consensus 414 ~~k~---------------~fA~~~~--~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt 475 (617)
..+. .|....+ ..-+-.| +-.++.||||=+.. ++..|++.+..+.. +.-+||.--+| |+
T Consensus 82 ~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~-~~~~~~DIliPcAl-~~~I~~~na~~i~~-~~ak~I~EgAN~p~ 158 (254)
T cd05313 82 GEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKK-PWEVPCDIAFPCAT-QNEVDAEDAKLLVK-NGCKYVAEGANMPC 158 (254)
T ss_pred HHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcc-hhcCCCcEEEeccc-cccCCHHHHHHHHH-cCCEEEEeCCCCCC
Confidence 3221 1110000 0001222 22457899996654 67999999999843 35789999998 76
Q ss_pred C
Q 007112 476 S 476 (617)
Q Consensus 476 ~ 476 (617)
+
T Consensus 159 t 159 (254)
T cd05313 159 T 159 (254)
T ss_pred C
Confidence 3
No 41
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.53 E-value=0.05 Score=57.49 Aligned_cols=95 Identities=21% Similarity=0.341 Sum_probs=76.0
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCc
Q 007112 335 GTASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 413 (617)
Q Consensus 335 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~ 413 (617)
+-.-+|-+|++.-++-.+.+|++.+++++|+|. .|..+|.+|.. .| ..+++++++.
T Consensus 136 ~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~-----~g-------atVtv~~s~t----------- 192 (286)
T PRK14175 136 TFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQ-----KN-------ASVTILHSRS----------- 192 (286)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHH-----CC-------CeEEEEeCCc-----------
Confidence 456778899999999999999999999999988 99999999864 24 3577887641
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007112 414 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN 473 (617)
Q Consensus 414 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN 473 (617)
.+|.+.+++ .|++|...+.++.|++++++ +.-+|+=++.
T Consensus 193 -------------~~l~~~~~~--ADIVIsAvg~p~~i~~~~vk------~gavVIDvGi 231 (286)
T PRK14175 193 -------------KDMASYLKD--ADVIVSAVGKPGLVTKDVVK------EGAVIIDVGN 231 (286)
T ss_pred -------------hhHHHHHhh--CCEEEECCCCCcccCHHHcC------CCcEEEEcCC
Confidence 257888887 99999999999999998763 3345555544
No 42
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.47 E-value=0.047 Score=57.07 Aligned_cols=90 Identities=18% Similarity=0.260 Sum_probs=58.6
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCch-hchhhh
Q 007112 342 AGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH-FKKPWA 420 (617)
Q Consensus 342 Agll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~-~k~~fA 420 (617)
.|++.+++..+..++.++++++|||.||..|+..+.. .|+ ++|+++|+. ..|.+.+.. .+..|.
T Consensus 112 ~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~-----~G~------~~I~I~nR~----~~ka~~la~~l~~~~~ 176 (284)
T PRK12549 112 SGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLT-----LGV------ERLTIFDVD----PARAAALADELNARFP 176 (284)
T ss_pred HHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHHHHHHHHHHHhhCC
Confidence 5677788766667888999999999999999888864 365 679999985 333222322 111111
Q ss_pred c-ccCCCCCHHHHHhccCCcEEEeecCCC
Q 007112 421 H-EHAPIKSLLDAVKAIKPTMLMGTSGVG 448 (617)
Q Consensus 421 ~-~~~~~~~L~eaV~~vkPtvLIG~S~~~ 448 (617)
. ......++.+.++. +|++|.++..|
T Consensus 177 ~~~~~~~~~~~~~~~~--aDiVInaTp~G 203 (284)
T PRK12549 177 AARATAGSDLAAALAA--ADGLVHATPTG 203 (284)
T ss_pred CeEEEeccchHhhhCC--CCEEEECCcCC
Confidence 0 01112455556654 89999988765
No 43
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.43 E-value=0.11 Score=51.65 Aligned_cols=123 Identities=15% Similarity=0.210 Sum_probs=82.1
Q ss_pred chhHHHHHHHHHHHHHh--CCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCC
Q 007112 335 GTASVVLAGILSALKLV--GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESL 412 (617)
Q Consensus 335 GTaaV~LAgll~Alr~~--g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L 412 (617)
.||-=+..++-.+++.. +.+|++.+++|.|.|..|..+|+.|.+. | -+++++|++. +.+
T Consensus 4 aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~-----G-------~~Vvv~D~~~-------~~~ 64 (200)
T cd01075 4 PTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEE-----G-------AKLIVADINE-------EAV 64 (200)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEcCCH-------HHH
Confidence 35555666777777775 8899999999999999999999988653 5 3688888651 123
Q ss_pred chhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHhc
Q 007112 413 QHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN-PTSQSECTAEEAYT 487 (617)
Q Consensus 413 ~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt~~aEct~edA~~ 487 (617)
..++..|.. ... +..+... .+.|+++=++. +++.|++.++.| .-++|..-+| |++. ..+++.++
T Consensus 65 ~~~~~~~g~--~~v-~~~~l~~-~~~Dv~vp~A~-~~~I~~~~~~~l----~~~~v~~~AN~~~~~--~~~~~~L~ 129 (200)
T cd01075 65 ARAAELFGA--TVV-APEEIYS-VDADVFAPCAL-GGVINDDTIPQL----KAKAIAGAANNQLAD--PRHGQMLH 129 (200)
T ss_pred HHHHHHcCC--EEE-cchhhcc-ccCCEEEeccc-ccccCHHHHHHc----CCCEEEECCcCccCC--HhHHHHHH
Confidence 333333311 111 2233333 36899995554 679999999999 4678888888 6632 33445544
No 44
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.40 E-value=0.089 Score=51.07 Aligned_cols=54 Identities=33% Similarity=0.438 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 336 TASVVLAGILSALKLVGGTLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 336 TaaV~LAgll~Alr~~g~~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
||+.+++.+..+++..|.++++.+++++|+ |..|..++..+.. .| .++++++++
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~-----~g-------~~V~l~~R~ 61 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAR-----EG-------ARVVLVGRD 61 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHH-----CC-------CEEEEEcCC
Confidence 677778888888888899999999999997 9988888887764 23 368888765
No 45
>PLN00106 malate dehydrogenase
Probab=95.36 E-value=0.089 Score=56.32 Aligned_cols=118 Identities=24% Similarity=0.320 Sum_probs=81.4
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhh
Q 007112 342 AGILSALKLVGGTLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWA 420 (617)
Q Consensus 342 Agll~Alr~~g~~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA 420 (617)
|.-+-|+|..|..-. .||+|+|| |..|.-+|..|+. .|+ ...+.|+|.+- ..+-.-+|.+-.. +.
T Consensus 4 ~~~~~~~~~~~~~~~-~KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~el~L~Di~~--~~g~a~Dl~~~~~-~~ 69 (323)
T PLN00106 4 ASSLRACRAKGGAPG-FKVAVLGAAGGIGQPLSLLMKM-----NPL-----VSELHLYDIAN--TPGVAADVSHINT-PA 69 (323)
T ss_pred hhhhhccccccCCCC-CEEEEECCCCHHHHHHHHHHHh-----CCC-----CCEEEEEecCC--CCeeEchhhhCCc-Cc
Confidence 345678888887666 59999999 9999999987753 244 25799999865 1221112332221 11
Q ss_pred ccc--CCCCCHHHHHhccCCcEEEeecCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007112 421 HEH--APIKSLLDAVKAIKPTMLMGTSGVGKT--------------FTKEVVEAMASFNEKPVIFALSNPT 475 (617)
Q Consensus 421 ~~~--~~~~~L~eaV~~vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt 475 (617)
+-. ...+++.++++. .|+.|=+.+.+.. ..+++++.+.+++.+.||+.-|||.
T Consensus 70 ~i~~~~~~~d~~~~l~~--aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 70 QVRGFLGDDQLGDALKG--ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred eEEEEeCCCCHHHHcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 211 133567888988 8888877776532 2357888899999999999999999
No 46
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.19 E-value=0.07 Score=49.18 Aligned_cols=108 Identities=21% Similarity=0.338 Sum_probs=67.8
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhc
Q 007112 342 AGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH 421 (617)
Q Consensus 342 Agll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~ 421 (617)
.|+.+|++..+.++++.+++|+|+|..|..+++.+... | -.+++++|++ .++ .....+.+..
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~-----g------~~~v~v~~r~----~~~---~~~~~~~~~~ 65 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAEL-----G------AAKIVIVNRT----LEK---AKALAERFGE 65 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHC-----C------CCEEEEEcCC----HHH---HHHHHHHHhh
Confidence 58899999988889999999999998888888777532 3 1578888875 111 2222222221
Q ss_pred c--cCCCCCHHHHHhccCCcEEEeecCCCCC------CCHHHHHHHHcCCCCcEEEecC-CCC
Q 007112 422 E--HAPIKSLLDAVKAIKPTMLMGTSGVGKT------FTKEVVEAMASFNEKPVIFALS-NPT 475 (617)
Q Consensus 422 ~--~~~~~~L~eaV~~vkPtvLIG~S~~~g~------Fteevv~~Ma~~~erPIIFaLS-NPt 475 (617)
. .....++.++++. +|++|-+...+-. |.+.. ..+..+|+=+| +|.
T Consensus 66 ~~~~~~~~~~~~~~~~--~Dvvi~~~~~~~~~~~~~~~~~~~------~~~~~~v~D~~~~~~ 120 (155)
T cd01065 66 LGIAIAYLDLEELLAE--ADLIINTTPVGMKPGDELPLPPSL------LKPGGVVYDVVYNPL 120 (155)
T ss_pred cccceeecchhhcccc--CCEEEeCcCCCCCCCCCCCCCHHH------cCCCCEEEEcCcCCC
Confidence 1 0123466676655 8999977665421 22221 24566777774 454
No 47
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.52 E-value=0.13 Score=55.78 Aligned_cols=95 Identities=21% Similarity=0.309 Sum_probs=63.5
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc----cCCCCCHH
Q 007112 355 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE----HAPIKSLL 430 (617)
Q Consensus 355 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~----~~~~~~L~ 430 (617)
+...+++|+|+|.+|.++++.+.. .|. ++.++|++ ..| +......|... ..+...|.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~-----lGa-------~V~v~d~~----~~~---~~~l~~~~g~~v~~~~~~~~~l~ 225 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANG-----LGA-------TVTILDIN----IDR---LRQLDAEFGGRIHTRYSNAYEIE 225 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHH-----CCC-------eEEEEECC----HHH---HHHHHHhcCceeEeccCCHHHHH
Confidence 567889999999999999988864 252 48889874 111 22211222111 11123578
Q ss_pred HHHhccCCcEEEeecCC-----CCCCCHHHHHHHHcCCCCcEEEecCC
Q 007112 431 DAVKAIKPTMLMGTSGV-----GKTFTKEVVEAMASFNEKPVIFALSN 473 (617)
Q Consensus 431 eaV~~vkPtvLIG~S~~-----~g~Fteevv~~Ma~~~erPIIFaLSN 473 (617)
++++. .|++|.+... +.++|++.++.|. ++.+|+-+|-
T Consensus 226 ~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk---~g~vIvDva~ 268 (370)
T TIGR00518 226 DAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMK---PGAVIVDVAI 268 (370)
T ss_pred HHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCC---CCCEEEEEec
Confidence 88875 8999988633 4468999999985 5678887774
No 48
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=94.49 E-value=0.2 Score=54.17 Aligned_cols=91 Identities=12% Similarity=0.202 Sum_probs=58.8
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHH
Q 007112 353 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDA 432 (617)
Q Consensus 353 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~ea 432 (617)
.+|++.+++++|||+.|--+|+.|.. .|. ++|+++++.-- + .+|..-. .++
T Consensus 170 ~~l~~k~vLvIGaGem~~l~a~~L~~-----~g~------~~i~v~nRt~~----~--------~~~~~~~------~~~ 220 (338)
T PRK00676 170 QKSKKASLLFIGYSEINRKVAYYLQR-----QGY------SRITFCSRQQL----T--------LPYRTVV------REE 220 (338)
T ss_pred CCccCCEEEEEcccHHHHHHHHHHHH-----cCC------CEEEEEcCCcc----c--------cchhhhh------hhh
Confidence 56999999999999988777766654 364 67999888641 1 2232100 011
Q ss_pred Hh-ccCCcEEEee----cCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC
Q 007112 433 VK-AIKPTMLMGT----SGVGKTFTKEVVEAMASFNEKPVIFALSNPTS 476 (617)
Q Consensus 433 V~-~vkPtvLIG~----S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~ 476 (617)
+. ..+.||+|=. ++.....|.+.++.. .+| ++|=||+|-.
T Consensus 221 ~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~---~~r-~~iDLAvPRd 265 (338)
T PRK00676 221 LSFQDPYDVIFFGSSESAYAFPHLSWESLADI---PDR-IVFDFNVPRT 265 (338)
T ss_pred hhcccCCCEEEEcCCcCCCCCceeeHHHHhhc---cCc-EEEEecCCCC
Confidence 11 1358999964 344456777766542 224 9999999984
No 49
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.45 E-value=0.095 Score=54.63 Aligned_cols=101 Identities=20% Similarity=0.145 Sum_probs=62.5
Q ss_pred CceeecCccchhHHHHHHHHHHHHHhCC--CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCc
Q 007112 326 HLVFNDDIQGTASVVLAGILSALKLVGG--TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 403 (617)
Q Consensus 326 ~~~FNDDiQGTaaV~LAgll~Alr~~g~--~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GL 403 (617)
..=+|=|. .|++.+++..+. ++++++++++|||.||-.|+-.|.. .|. ++|+++++.
T Consensus 100 l~G~NTD~--------~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~-----~G~------~~i~I~nRt-- 158 (282)
T TIGR01809 100 WKGDNTDW--------DGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALAS-----LGV------TDITVINRN-- 158 (282)
T ss_pred EEEecCCH--------HHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHH-----cCC------CeEEEEeCC--
Confidence 44567775 456777776663 6889999999999998888777654 365 689999874
Q ss_pred ccCCcccCCchhchhhhccc--CCCC---CHHHHHhccCCcEEEeecCCCCCCCHH
Q 007112 404 IVSSRKESLQHFKKPWAHEH--APIK---SLLDAVKAIKPTMLMGTSGVGKTFTKE 454 (617)
Q Consensus 404 i~~~R~~~L~~~k~~fA~~~--~~~~---~L~eaV~~vkPtvLIG~S~~~g~Ftee 454 (617)
.+|.+.|.+ .|.... .... .+.+++. ++|++|.++..+-.++.+
T Consensus 159 --~~ka~~La~---~~~~~~~~~~~~~~~~~~~~~~--~~DiVInaTp~g~~~~~~ 207 (282)
T TIGR01809 159 --PDKLSRLVD---LGVQVGVITRLEGDSGGLAIEK--AAEVLVSTVPADVPADYV 207 (282)
T ss_pred --HHHHHHHHH---HhhhcCcceeccchhhhhhccc--CCCEEEECCCCCCCCCHH
Confidence 233222322 121100 0111 2333343 489999998887544443
No 50
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=94.20 E-value=0.34 Score=47.55 Aligned_cols=121 Identities=17% Similarity=0.276 Sum_probs=75.2
Q ss_pred cchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCc
Q 007112 334 QGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 413 (617)
Q Consensus 334 QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~ 413 (617)
.||+--++-|++ |.++..|...++|++|-|--|-|||+.+... | -++.++|.+= . .-++
T Consensus 3 yG~g~S~~d~i~---r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~-----G-------a~V~V~e~DP-----i-~alq 61 (162)
T PF00670_consen 3 YGTGQSLVDGIM---RATNLMLAGKRVVVIGYGKVGKGIARALRGL-----G-------ARVTVTEIDP-----I-RALQ 61 (162)
T ss_dssp HHHHHHHHHHHH---HHH-S--TTSEEEEE--SHHHHHHHHHHHHT-----T--------EEEEE-SSH-----H-HHHH
T ss_pred cccchhHHHHHH---hcCceeeCCCEEEEeCCCcccHHHHHHHhhC-----C-------CEEEEEECCh-----H-HHHH
Confidence 467776776766 5789999999999999999999999998653 5 3577666531 0 0122
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc
Q 007112 414 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYT 487 (617)
Q Consensus 414 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~ 487 (617)
.+- +.-+..++.|+++. +|++|-+++...+.+.|.++.|. +.-|+.-..- ..-|+.-+..-+
T Consensus 62 A~~-----dGf~v~~~~~a~~~--adi~vtaTG~~~vi~~e~~~~mk---dgail~n~Gh--~d~Eid~~~L~~ 123 (162)
T PF00670_consen 62 AAM-----DGFEVMTLEEALRD--ADIFVTATGNKDVITGEHFRQMK---DGAILANAGH--FDVEIDVDALEA 123 (162)
T ss_dssp HHH-----TT-EEE-HHHHTTT---SEEEE-SSSSSSB-HHHHHHS----TTEEEEESSS--STTSBTHHHHHT
T ss_pred hhh-----cCcEecCHHHHHhh--CCEEEECCCCccccCHHHHHHhc---CCeEEeccCc--CceeEeeccccc
Confidence 211 22234579999986 99999999998899999999995 4445544432 236777766443
No 51
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.06 E-value=0.096 Score=44.78 Aligned_cols=94 Identities=12% Similarity=0.210 Sum_probs=63.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEE-ccCCcccCCcccCCchhchhhhcccCCCC-CHHHHHhcc
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLV-DSKGLIVSSRKESLQHFKKPWAHEHAPIK-SLLDAVKAI 436 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lv-D~~GLi~~~R~~~L~~~k~~fA~~~~~~~-~L~eaV~~v 436 (617)
||.|+|+|..|..+++.+... |. ...+|+++ +++ .+.+.+.++.|... -.. +..|+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-----g~----~~~~v~~~~~r~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~- 61 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-----GI----KPHEVIIVSSRS-------PEKAAELAKEYGVQ--ATADDNEEAAQE- 61 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----TS-----GGEEEEEEESS-------HHHHHHHHHHCTTE--EESEEHHHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC----CceeEEeeccCc-------HHHHHHHHHhhccc--cccCChHHhhcc-
Confidence 789999999999999888753 54 34678855 553 12233433333211 123 78999996
Q ss_pred CCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007112 437 KPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNP 474 (617)
Q Consensus 437 kPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNP 474 (617)
+|++| ++-.+ ..-+++++.+....+..+|.-++||
T Consensus 62 -advvi-lav~p-~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 62 -ADVVI-LAVKP-QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp -TSEEE-E-S-G-GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred -CCEEE-EEECH-HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 89887 66555 4566788888667788999988886
No 52
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.76 E-value=0.61 Score=49.46 Aligned_cols=93 Identities=15% Similarity=0.192 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCch
Q 007112 336 TASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 414 (617)
Q Consensus 336 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~ 414 (617)
-.-+|-+|++..++-.+.+|++.+++++|-|. .|..+|.||.. .| ..+.+|+++
T Consensus 138 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~-----~~-------atVtv~hs~------------- 192 (285)
T PRK10792 138 LRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLL-----AG-------CTVTVCHRF------------- 192 (285)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CC-------CeEEEEECC-------------
Confidence 35778899999999999999999999999998 99999998864 24 347777764
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 007112 415 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALS 472 (617)
Q Consensus 415 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 472 (617)
.++|.+.+++ .|++|-..|.++.|+.++|+ +.-+|.=..
T Consensus 193 -----------T~~l~~~~~~--ADIvi~avG~p~~v~~~~vk------~gavVIDvG 231 (285)
T PRK10792 193 -----------TKNLRHHVRN--ADLLVVAVGKPGFIPGEWIK------PGAIVIDVG 231 (285)
T ss_pred -----------CCCHHHHHhh--CCEEEEcCCCcccccHHHcC------CCcEEEEcc
Confidence 1358888987 99999999999999998886 556666555
No 53
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=93.62 E-value=0.16 Score=52.35 Aligned_cols=129 Identities=19% Similarity=0.268 Sum_probs=87.8
Q ss_pred ccchhHHHHHHHHHHHHHhCCC-CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccC
Q 007112 333 IQGTASVVLAGILSALKLVGGT-LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKES 411 (617)
Q Consensus 333 iQGTaaV~LAgll~Alr~~g~~-l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~ 411 (617)
-+-||-=+..++-.+++..|.. +++.|++|-|.|..|...|+.+.+. |. +=+-+.|++|-|++...-+
T Consensus 7 ~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~-----Ga------~vv~vsD~~G~i~~~~Gld 75 (244)
T PF00208_consen 7 SEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAEL-----GA------KVVAVSDSSGAIYDPDGLD 75 (244)
T ss_dssp TTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHT-----TE------EEEEEEESSEEEEETTEEH
T ss_pred CcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEecCceEEEcCCCch
Confidence 4567777888888999987766 9999999999999999999999764 52 3456678888888653211
Q ss_pred CchhchhhhcccCCCCCH-----------HH--HHhccCCcEEEeecCCCCCCCHHHHH-HHHcCCCCcEEEecCC-CC
Q 007112 412 LQHFKKPWAHEHAPIKSL-----------LD--AVKAIKPTMLMGTSGVGKTFTKEVVE-AMASFNEKPVIFALSN-PT 475 (617)
Q Consensus 412 L~~~k~~fA~~~~~~~~L-----------~e--aV~~vkPtvLIG~S~~~g~Fteevv~-~Ma~~~erPIIFaLSN-Pt 475 (617)
.+.-.....+....+..+ .+ .+=.++.||||=+ +.++.+|++.+. .+. +.-+||.--+| |+
T Consensus 76 ~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~-A~~~~I~~~~~~~~i~--~~akiIvegAN~p~ 151 (244)
T PF00208_consen 76 VEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPC-ALGNVINEDNAPSLIK--SGAKIIVEGANGPL 151 (244)
T ss_dssp HHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEE-SSSTSBSCHHHCHCHH--TT-SEEEESSSSSB
T ss_pred HHHHHHHHHHhCCcccccccccccceeEeccccccccccccEEEEc-CCCCeeCHHHHHHHHh--ccCcEEEeCcchhc
Confidence 111111111111101111 11 4555799999988 667899999998 674 24789999999 55
No 54
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=93.38 E-value=0.7 Score=44.01 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhch
Q 007112 338 SVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKK 417 (617)
Q Consensus 338 aV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~ 417 (617)
-++..|++.-++..|.+++.++++++|.+.. +++-++..|.+ .| ..+..+|++.
T Consensus 9 p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~---vG~pla~lL~~-~g-------atV~~~~~~t--------------- 62 (140)
T cd05212 9 SPVAKAVKELLNKEGVRLDGKKVLVVGRSGI---VGAPLQCLLQR-DG-------ATVYSCDWKT--------------- 62 (140)
T ss_pred ccHHHHHHHHHHHcCCCCCCCEEEEECCCch---HHHHHHHHHHH-CC-------CEEEEeCCCC---------------
Confidence 4578889999999999999999999998764 45555554444 35 3577777641
Q ss_pred hhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007112 418 PWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 457 (617)
Q Consensus 418 ~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 457 (617)
.+|.+++++ .|++|-..+.++.|+.|+|+
T Consensus 63 ---------~~l~~~v~~--ADIVvsAtg~~~~i~~~~ik 91 (140)
T cd05212 63 ---------IQLQSKVHD--ADVVVVGSPKPEKVPTEWIK 91 (140)
T ss_pred ---------cCHHHHHhh--CCEEEEecCCCCccCHHHcC
Confidence 268889987 99999999999999999986
No 55
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=93.19 E-value=0.2 Score=55.49 Aligned_cols=126 Identities=15% Similarity=0.258 Sum_probs=75.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc-cCC-----CCCHHH
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAP-----IKSLLD 431 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~-~~~-----~~~L~e 431 (617)
.||+|+||||+ -..+++-..+.+...++ .+.|||+|-+- ..|-+.+...-+.+.+. ..+ ..++.|
T Consensus 1 ~KI~iIGaGS~--~tp~li~~l~~~~~~l~----~~ei~L~Did~---~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~ 71 (419)
T cd05296 1 MKLTIIGGGSS--YTPELIEGLIRRYEELP----VTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIKVHLTTDRRE 71 (419)
T ss_pred CEEEEECCchH--hHHHHHHHHHhccccCC----CCEEEEecCCh---HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHH
Confidence 38999999996 33344433332222332 37899999862 22211111111222222 112 258999
Q ss_pred HHhccCCcEEEeecCCCCC----------------------------------CCHHHHHHHHcCCCCcEEEecCCCCCC
Q 007112 432 AVKAIKPTMLMGTSGVGKT----------------------------------FTKEVVEAMASFNEKPVIFALSNPTSQ 477 (617)
Q Consensus 432 aV~~vkPtvLIG~S~~~g~----------------------------------Fteevv~~Ma~~~erPIIFaLSNPt~~ 477 (617)
|++. +|..|=.-.+||. .=.++++.|.++|+.-+|+=.|||..
T Consensus 72 al~g--adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~- 148 (419)
T cd05296 72 ALEG--ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAG- 148 (419)
T ss_pred HhCC--CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHH-
Confidence 9987 7877766555542 12378888999999999999999983
Q ss_pred CCCCHHHHhccccCcEEEeeC
Q 007112 478 SECTAEEAYTWSKGQAIFASG 498 (617)
Q Consensus 478 aEct~edA~~wT~GraifASG 498 (617)
...+-+++++.-| +|.+|
T Consensus 149 --ivt~a~~k~~~~r-viGlc 166 (419)
T cd05296 149 --IVTEAVLRHTGDR-VIGLC 166 (419)
T ss_pred --HHHHHHHHhccCC-EEeeC
Confidence 4455556677444 44443
No 56
>PRK05086 malate dehydrogenase; Provisional
Probab=93.11 E-value=0.5 Score=50.17 Aligned_cols=105 Identities=22% Similarity=0.269 Sum_probs=67.2
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc-cCCCCCHHHHHhc
Q 007112 358 QTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAPIKSLLDAVKA 435 (617)
Q Consensus 358 ~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~-~~~~~~L~eaV~~ 435 (617)
.||+|+|| |..|..+|.++... .+. -..+.++|++-. .++..-++.+. .....- .....++.++++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~----~~~-----~~el~L~d~~~~-~~g~alDl~~~-~~~~~i~~~~~~d~~~~l~~ 69 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ----LPA-----GSELSLYDIAPV-TPGVAVDLSHI-PTAVKIKGFSGEDPTPALEG 69 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC----CCC-----ccEEEEEecCCC-CcceehhhhcC-CCCceEEEeCCCCHHHHcCC
Confidence 38999999 99999999877432 122 256889997522 11110012211 000000 0013467788877
Q ss_pred cCCcEEEeecCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007112 436 IKPTMLMGTSGVGKT--------------FTKEVVEAMASFNEKPVIFALSNPT 475 (617)
Q Consensus 436 vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt 475 (617)
.|++|=+.|.+.- ..++++++|.+++.+.+|+-.|||.
T Consensus 70 --~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 70 --ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred --CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 8988866665321 4568999999999999999999998
No 57
>PRK08328 hypothetical protein; Provisional
Probab=93.06 E-value=0.058 Score=54.68 Aligned_cols=120 Identities=18% Similarity=0.206 Sum_probs=75.0
Q ss_pred HHHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEE
Q 007112 319 LSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLV 398 (617)
Q Consensus 319 L~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lv 398 (617)
++||..++..|..+.| .+|++.||+++|+|..|.-||+.|+.+ |+ ++|.++
T Consensus 7 ~~ry~Rq~~~~g~~~q------------------~~L~~~~VlIiG~GGlGs~ia~~La~~-----Gv------g~i~lv 57 (231)
T PRK08328 7 LERYDRQIMIFGVEGQ------------------EKLKKAKVAVVGVGGLGSPVAYYLAAA-----GV------GRILLI 57 (231)
T ss_pred HHHHhhHHHhcCHHHH------------------HHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEE
Confidence 5788877776765432 456789999999999999999999764 76 789999
Q ss_pred ccCCcccCCcccCCchhchhhhcccCC----CCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEE-ecCC
Q 007112 399 DSKGLIVSSRKESLQHFKKPWAHEHAP----IKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIF-ALSN 473 (617)
Q Consensus 399 D~~GLi~~~R~~~L~~~k~~fA~~~~~----~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF-aLSN 473 (617)
|.+ .+.. .+|..+ --|-.+.-. .....+.++...|++.|=... +-++++-+...- .+..+|| +.-|
T Consensus 58 D~D-~ve~---sNL~Rq-~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~--~~~~~~~~~~~l--~~~D~Vid~~d~ 128 (231)
T PRK08328 58 DEQ-TPEL---SNLNRQ-ILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV--GRLSEENIDEVL--KGVDVIVDCLDN 128 (231)
T ss_pred cCC-ccCh---hhhccc-cccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe--ccCCHHHHHHHH--hcCCEEEECCCC
Confidence 987 2221 234432 111111111 112345577888998876633 346776555433 2445666 5567
Q ss_pred CCC
Q 007112 474 PTS 476 (617)
Q Consensus 474 Pt~ 476 (617)
+.+
T Consensus 129 ~~~ 131 (231)
T PRK08328 129 FET 131 (231)
T ss_pred HHH
Confidence 663
No 58
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.05 E-value=0.39 Score=50.92 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchh
Q 007112 337 ASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 415 (617)
Q Consensus 337 aaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~ 415 (617)
.-+|-+|++.=++-.+.+++++++|++|.| ..|.-+|.++.. .|. .+.+|+++
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~-----~gA-------tVtv~hs~-------------- 190 (285)
T PRK14191 137 VPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLN-----AGA-------SVSVCHIL-------------- 190 (285)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHH-----CCC-------EEEEEeCC--------------
Confidence 457788888889999999999999999999 999999999864 253 35666442
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007112 416 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 457 (617)
Q Consensus 416 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 457 (617)
..+|.+.+++ +|++|...+.++.+++++|+
T Consensus 191 ----------t~~l~~~~~~--ADIvV~AvG~p~~i~~~~vk 220 (285)
T PRK14191 191 ----------TKDLSFYTQN--ADIVCVGVGKPDLIKASMVK 220 (285)
T ss_pred ----------cHHHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1246788887 99999999999999999984
No 59
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.01 E-value=0.19 Score=49.84 Aligned_cols=38 Identities=29% Similarity=0.375 Sum_probs=33.5
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 353 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 353 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
.+|++.||+++|+|..|.-+|+.|+.+ |+ ++|+++|.+
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~-----Gv------~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGA-----GV------GTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEecCC
Confidence 468899999999999999999988764 76 789999997
No 60
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=92.87 E-value=0.22 Score=50.95 Aligned_cols=126 Identities=20% Similarity=0.297 Sum_probs=79.3
Q ss_pred EEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc--cCCCCCHHHHHhcc
Q 007112 360 FLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE--HAPIKSLLDAVKAI 436 (617)
Q Consensus 360 iv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~--~~~~~~L~eaV~~v 436 (617)
|.|+|| |..|.++|..++.. |. .....++|+|.+.-..+.....|.+...++ .. -...+++.++++.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-----~~---~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-~~~~i~~~~d~~~~~~~- 70 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-----SV---LLAIELVLYDIDEEKLKGVAMDLQDAVEPL-ADIKVSITDDPYEAFKD- 70 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-----CC---CcceEEEEEeCCcccchHHHHHHHHhhhhc-cCcEEEECCchHHHhCC-
Confidence 578999 99899999887642 41 123679999986411111111233332222 11 1113568899987
Q ss_pred CCcEEEeecCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc--cCcEEEeeCC
Q 007112 437 KPTMLMGTSGVGKT--------------FTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWS--KGQAIFASGS 499 (617)
Q Consensus 437 kPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT--~GraifASGS 499 (617)
.|++|=+.+.++. .-+++.+.|.++|...+++-.|||. .....-+++++ .-.-+|++|.
T Consensus 71 -aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~---d~~t~~~~~~sg~~~~kviG~~~ 145 (263)
T cd00650 71 -ADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPV---DIITYLVWRYSGLPKEKVIGLGT 145 (263)
T ss_pred -CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHhCCCchhEEEeec
Confidence 8988866655432 2468889999999999999999997 34444555553 2233666664
No 61
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=92.83 E-value=0.17 Score=50.43 Aligned_cols=108 Identities=19% Similarity=0.259 Sum_probs=67.9
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhccc--CCCCCHH
Q 007112 353 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH--APIKSLL 430 (617)
Q Consensus 353 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~--~~~~~L~ 430 (617)
.+|++.||+++|+|..|.+||..++.+ |+ +++.++|.+= |..+ +|+.+ ..+..+- .....+.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~-----Gv------g~i~lvD~D~-ve~s---NL~Rq-~~~~~~iG~~Ka~~~~ 80 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARA-----GI------GKLILVDFDV-VEPS---NLNRQ-QYKASQVGEPKTEALK 80 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEECCCE-Eccc---ccccc-cCChhhCCCHHHHHHH
Confidence 357889999999999999999999764 76 7899999982 2222 35542 2222111 1113467
Q ss_pred HHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEE-ecCCCCCCCCC
Q 007112 431 DAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIF-ALSNPTSQSEC 480 (617)
Q Consensus 431 eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF-aLSNPt~~aEc 480 (617)
+.++.+.|++-|-. ...-++++-+...-+ .--+|+ +.-||..+.+.
T Consensus 81 ~~l~~inp~~~i~~--~~~~i~~~~~~~~~~--~~DlVi~a~Dn~~~k~~l 127 (200)
T TIGR02354 81 ENISEINPYTEIEA--YDEKITEENIDKFFK--DADIVCEAFDNAEAKAML 127 (200)
T ss_pred HHHHHHCCCCEEEE--eeeeCCHhHHHHHhc--CCCEEEECCCCHHHHHHH
Confidence 78888889865443 333567766665432 233555 65677755443
No 62
>PRK08605 D-lactate dehydrogenase; Validated
Probab=92.80 E-value=1.9 Score=46.12 Aligned_cols=153 Identities=11% Similarity=0.163 Sum_probs=93.8
Q ss_pred HHHHHHHHHhcCCCeeeeeecCCCCcHHHHHHHHcCCCceeec-C--ccchhHHHHHHHHHHHHH---------------
Q 007112 289 QEFMTAVKQNYGEKVLIQFEDFANHNAFELLSKYSSSHLVFND-D--IQGTASVVLAGILSALKL--------------- 350 (617)
Q Consensus 289 defv~av~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FND-D--iQGTaaV~LAgll~Alr~--------------- 350 (617)
.|++++..+. |-+ +|+.-=-+..| .++-.--+..+.+.|- + -+.+|=-+++.+|+.+|-
T Consensus 59 ~~~l~~~~~~-~lk-~I~~~~~G~d~-id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~ 135 (332)
T PRK08605 59 EAIYKLLNEL-GIK-QIAQRSAGFDT-YDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRW 135 (332)
T ss_pred HHHHHhhhhc-Cce-EEEEcccccch-hhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCccc
Confidence 5666655431 111 25544333333 3333333457777774 2 245666678888876652
Q ss_pred ----hCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCC
Q 007112 351 ----VGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPI 426 (617)
Q Consensus 351 ----~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~ 426 (617)
.|..|.+++|.|+|.|..|..+|+.+... .|+ ++|.+|+.. . ... ..++ ...
T Consensus 136 ~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~----~g~-------~V~~~d~~~----~--~~~----~~~~---~~~ 191 (332)
T PRK08605 136 EPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKG----YGS-------DVVAYDPFP----N--AKA----ATYV---DYK 191 (332)
T ss_pred ccccccceeCCCEEEEECCCHHHHHHHHHHHhc----CCC-------EEEEECCCc----c--HhH----Hhhc---ccc
Confidence 23468899999999999999999998533 253 688888752 1 001 1111 123
Q ss_pred CCHHHHHhccCCcEEEeecC----CCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007112 427 KSLLDAVKAIKPTMLMGTSG----VGKTFTKEVVEAMASFNEKPVIFALSN 473 (617)
Q Consensus 427 ~~L~eaV~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLSN 473 (617)
.+|.|+++. .|+++=..- ..++|+++.++.|. +..++.=.|.
T Consensus 192 ~~l~ell~~--aDvIvl~lP~t~~t~~li~~~~l~~mk---~gailIN~sR 237 (332)
T PRK08605 192 DTIEEAVEG--ADIVTLHMPATKYNHYLFNADLFKHFK---KGAVFVNCAR 237 (332)
T ss_pred CCHHHHHHh--CCEEEEeCCCCcchhhhcCHHHHhcCC---CCcEEEECCC
Confidence 589999987 898885421 23577788888885 5667776665
No 63
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.77 E-value=0.43 Score=54.27 Aligned_cols=182 Identities=19% Similarity=0.217 Sum_probs=94.9
Q ss_pred ccccCcccccccccCCChhhHHHHHHHHHHHHHHhcCCCeeeeeecCCC-CcHHHHHHHHcCCCceeecCccchhHHHHH
Q 007112 264 QLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFAN-HNAFELLSKYSSSHLVFNDDIQGTASVVLA 342 (617)
Q Consensus 264 ~LL~DplYlG~r~~R~~g~eY~~fidefv~av~~~fGp~~lIqfEDf~~-~~Af~lL~ryr~~~~~FNDDiQGTaaV~LA 342 (617)
.|.++-.++|+-|+-.. .++++.+.+ + .=.+|-+|.+-. .+|. +.+..--+-.|-|=-+|..|
T Consensus 82 ~l~~g~~li~~l~p~~~----~~l~~~l~~----~--~it~ia~e~vpr~sraq------~~d~lssma~IAGy~Av~~a 145 (509)
T PRK09424 82 LLREGATLVSFIWPAQN----PELLEKLAA----R--GVTVLAMDAVPRISRAQ------SLDALSSMANIAGYRAVIEA 145 (509)
T ss_pred hcCCCCEEEEEeCcccC----HHHHHHHHH----c--CCEEEEeecccccccCC------CcccccchhhhhHHHHHHHH
Confidence 45556677777776322 233333332 1 234566776642 1111 11223334455665555554
Q ss_pred HHHHHHHHhC-----CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccC---C--
Q 007112 343 GILSALKLVG-----GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKES---L-- 412 (617)
Q Consensus 343 gll~Alr~~g-----~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~---L-- 412 (617)
+-.-.--..| ......|++|+|||.+|.+.+..... .| | +++.+|.. ..|.+. +
T Consensus 146 a~~~~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~-----lG-----A--~V~a~D~~----~~rle~aeslGA 209 (509)
T PRK09424 146 AHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGS-----LG-----A--IVRAFDTR----PEVAEQVESMGA 209 (509)
T ss_pred HHHhcccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEeCC----HHHHHHHHHcCC
Confidence 4322111111 13458999999999999888766543 36 3 47777764 111110 0
Q ss_pred ----------chhchhhhcccCCCCCHHHHH-----hc-cCCcEEEeecCCCC-----CCCHHHHHHHHcCCCCcEEEec
Q 007112 413 ----------QHFKKPWAHEHAPIKSLLDAV-----KA-IKPTMLMGTSGVGK-----TFTKEVVEAMASFNEKPVIFAL 471 (617)
Q Consensus 413 ----------~~~k~~fA~~~~~~~~L~eaV-----~~-vkPtvLIG~S~~~g-----~Fteevv~~Ma~~~erPIIFaL 471 (617)
......|++... .++.+.. +. -+.|++|.+++.+| +++++.++.|. +.-+|.=+
T Consensus 210 ~~v~i~~~e~~~~~~gya~~~s--~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mk---pGgvIVdv 284 (509)
T PRK09424 210 EFLELDFEEEGGSGDGYAKVMS--EEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMK---PGSVIVDL 284 (509)
T ss_pred eEEEeccccccccccchhhhcc--hhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcC---CCCEEEEE
Confidence 001112333211 1222221 11 14999999999876 67999999996 45566667
Q ss_pred CCCC-CCCCCCH
Q 007112 472 SNPT-SQSECTA 482 (617)
Q Consensus 472 SNPt-~~aEct~ 482 (617)
+.+. ..+|++.
T Consensus 285 g~~~GG~~e~t~ 296 (509)
T PRK09424 285 AAENGGNCELTV 296 (509)
T ss_pred ccCCCCCccccc
Confidence 7653 3345553
No 64
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.52 E-value=4.9 Score=41.85 Aligned_cols=121 Identities=21% Similarity=0.292 Sum_probs=66.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchh----hhc--c---------
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKP----WAH--E--------- 422 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~----fA~--~--------- 422 (617)
++|.|+|+|..|.+||..++.. |. +++++|.+- . .+...+.. +.. +
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-----g~-------~V~~~d~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-----GL-------QVVLIDVME----G---ALERARGVIERALGVYAPLGIASAGMG 65 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEECCH----H---HHHHHHHHHHHHHHHhhhcccHHHHhh
Confidence 5899999999999999988643 53 588888641 1 12211111 000 0
Q ss_pred -cCCCCCHHHHHhccCCcEEEeecCCCCC-CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCC
Q 007112 423 -HAPIKSLLDAVKAIKPTMLMGTSGVGKT-FTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSP 500 (617)
Q Consensus 423 -~~~~~~L~eaV~~vkPtvLIG~S~~~g~-Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~GraifASGSP 500 (617)
.....++.++++. .|++| ++-.... -.+++++.+......-.|+. ||..+. +.++.-++.....-|..+-|
T Consensus 66 ~i~~~~~~~~~~~~--aDlVi-~av~~~~~~~~~v~~~l~~~~~~~~ii~-s~tsg~---~~~~l~~~~~~~~~~ig~h~ 138 (311)
T PRK06130 66 RIRMEAGLAAAVSG--ADLVI-EAVPEKLELKRDVFARLDGLCDPDTIFA-TNTSGL---PITAIAQAVTRPERFVGTHF 138 (311)
T ss_pred ceEEeCCHHHHhcc--CCEEE-EeccCcHHHHHHHHHHHHHhCCCCcEEE-ECCCCC---CHHHHHhhcCCcccEEEEcc
Confidence 0112467777775 67776 4443321 35667777766555444443 443332 24455454433333555556
Q ss_pred CCcc
Q 007112 501 FDPV 504 (617)
Q Consensus 501 F~pv 504 (617)
|.|.
T Consensus 139 ~~p~ 142 (311)
T PRK06130 139 FTPA 142 (311)
T ss_pred CCCC
Confidence 6665
No 65
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=92.43 E-value=0.07 Score=50.17 Aligned_cols=104 Identities=22% Similarity=0.370 Sum_probs=65.4
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC-CcccCCcccCCchhchhhhcccCCCCCHHHHHhcc
Q 007112 359 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK-GLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAI 436 (617)
Q Consensus 359 riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~-GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~v 436 (617)
||.|+|| |..|..+|-+|+.. |+ -+.|.|+|.+ ... ++..-+|.+..-+.-++..-..+..++++.
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~-----~l-----~~ei~L~D~~~~~~-~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~- 69 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQ-----GL-----ADEIVLIDINEDKA-EGEALDLSHASAPLPSPVRITSGDYEALKD- 69 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TT-----SSEEEEEESSHHHH-HHHHHHHHHHHHGSTEEEEEEESSGGGGTT-
T ss_pred EEEEECCCChHHHHHHHHHHhC-----CC-----CCceEEeccCcccc-eeeehhhhhhhhhccccccccccccccccc-
Confidence 8999999 99999999988763 55 2559999987 211 111111322221111111111255667776
Q ss_pred CCcEEEeecCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007112 437 KPTMLMGTSGVG---KT-----------FTKEVVEAMASFNEKPVIFALSNPT 475 (617)
Q Consensus 437 kPtvLIG~S~~~---g~-----------Fteevv~~Ma~~~erPIIFaLSNPt 475 (617)
.|++|=+.+.+ |- +-+++.+.+++++...+++-.|||.
T Consensus 70 -aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPv 121 (141)
T PF00056_consen 70 -ADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPV 121 (141)
T ss_dssp -ESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSH
T ss_pred -ccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcH
Confidence 89998665554 11 2246777888899999999999997
No 66
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=92.19 E-value=0.32 Score=51.17 Aligned_cols=49 Identities=33% Similarity=0.443 Sum_probs=39.7
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 342 AGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 342 Agll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
.|++.+++..+.++++.++|++|||-|+.+|+-.+.. .|+ ++|+++|+.
T Consensus 109 ~Gf~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~-----~g~------~~i~i~nRt 157 (288)
T PRK12749 109 TGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 157 (288)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 4677888888889999999999999998877666643 365 689999985
No 67
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=92.13 E-value=0.48 Score=49.74 Aligned_cols=126 Identities=14% Similarity=0.173 Sum_probs=76.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhccc-CCCCCHHHHHhccC
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH-APIKSLLDAVKAIK 437 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~-~~~~~L~eaV~~vk 437 (617)
||.|+|+|.+|..+|..++. .|+ ...|.++|.+-=..++-..+|.+......... -...+.. .++.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~-----~g~-----~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~-~l~~-- 68 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN-----QGI-----ADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYS-DCKD-- 68 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHH-HhCC--
Confidence 89999999999999998754 254 25799999852211111111221110000000 0113343 4554
Q ss_pred CcEEEeecCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccC--cEEEeeCCC
Q 007112 438 PTMLMGTSGVGKT--------------FTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKG--QAIFASGSP 500 (617)
Q Consensus 438 PtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~G--raifASGSP 500 (617)
.|++|=+++.+.. .=+++.+.|.+++..-+|+-.|||.. +...-++++++= +-+|.+|.-
T Consensus 69 aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d---~~~~~~~~~~g~p~~~v~g~gt~ 144 (306)
T cd05291 69 ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVD---VITYVVQKLSGLPKNRVIGTGTS 144 (306)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHH---HHHHHHHHHhCcCHHHEeeccch
Confidence 9999988877521 12577888889999999999999983 445555554311 347777754
No 68
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=91.77 E-value=2.8 Score=47.20 Aligned_cols=123 Identities=16% Similarity=0.206 Sum_probs=68.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchh------------chhhhcc--c
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF------------KKPWAHE--H 423 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~------------k~~fA~~--~ 423 (617)
.||-|+|+|..|.+||..++.+ |. ++.++|.. .+..+.+... +.+++.. .
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-----G~-------~V~v~D~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i 68 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-----GI-------DVAVFDPH----PEAERIIGEVLANAERAYAMLTDAPLPPEGRL 68 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCC----HHHHHHHHHHHHHHHHHHhhhccchhhhhhce
Confidence 4799999999999999998753 64 57888874 1111111100 0011111 1
Q ss_pred CCCCCHHHHHhccCCcEEEeecCCCCC-CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc--cCcEEEeeCCC
Q 007112 424 APIKSLLDAVKAIKPTMLMGTSGVGKT-FTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWS--KGQAIFASGSP 500 (617)
Q Consensus 424 ~~~~~L~eaV~~vkPtvLIG~S~~~g~-Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT--~GraifASGSP 500 (617)
....++.|+++. .|++| .+..... +.+++.+.+.+..+.-.|+..|--. .+ +++.-+.. .|+++.+ -|
T Consensus 69 ~~~~~~~ea~~~--aD~Vi-eavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsg--i~--~s~l~~~~~~~~r~~~~--hP 139 (495)
T PRK07531 69 TFCASLAEAVAG--ADWIQ-ESVPERLDLKRRVLAEIDAAARPDALIGSSTSG--FL--PSDLQEGMTHPERLFVA--HP 139 (495)
T ss_pred EeeCCHHHHhcC--CCEEE-EcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCC--CC--HHHHHhhcCCcceEEEE--ec
Confidence 123588899987 78887 5554432 4555666666555545666544322 22 33332322 4454444 68
Q ss_pred CCcce
Q 007112 501 FDPVE 505 (617)
Q Consensus 501 F~pv~ 505 (617)
|.|+.
T Consensus 140 ~nP~~ 144 (495)
T PRK07531 140 YNPVY 144 (495)
T ss_pred CCCcc
Confidence 88874
No 69
>PLN02928 oxidoreductase family protein
Probab=91.60 E-value=2.3 Score=45.90 Aligned_cols=140 Identities=14% Similarity=0.165 Sum_probs=87.1
Q ss_pred cchhHHHHHHHHHHHHH----------------hCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEE
Q 007112 334 QGTASVVLAGILSALKL----------------VGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWL 397 (617)
Q Consensus 334 QGTaaV~LAgll~Alr~----------------~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~l 397 (617)
+.+|--+++.+|+.+|- .+..|.++++.|+|.|..|..+|+.+... |+ +++.
T Consensus 120 ~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~af-----G~-------~V~~ 187 (347)
T PLN02928 120 ASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPF-----GV-------KLLA 187 (347)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHHHHHHHHhhC-----CC-------EEEE
Confidence 34566677777776663 24579999999999999999999998642 64 5788
Q ss_pred EccCCcccCCcccCC--c-hhchhhhcccCCCCCHHHHHhccCCcEEEeec----CCCCCCCHHHHHHHHcCCCCcEEEe
Q 007112 398 VDSKGLIVSSRKESL--Q-HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTS----GVGKTFTKEVVEAMASFNEKPVIFA 470 (617)
Q Consensus 398 vD~~GLi~~~R~~~L--~-~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S----~~~g~Fteevv~~Ma~~~erPIIFa 470 (617)
+|+.. .......+ + ..-..+........+|.|+++. .|+++-.- ...++|+++.+..|. +..+|.=
T Consensus 188 ~dr~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~--aDiVvl~lPlt~~T~~li~~~~l~~Mk---~ga~lIN 260 (347)
T PLN02928 188 TRRSW--TSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGE--ADIVVLCCTLTKETAGIVNDEFLSSMK---KGALLVN 260 (347)
T ss_pred ECCCC--ChhhhhhhccccccccccccccCcccCHHHHHhh--CCEEEECCCCChHhhcccCHHHHhcCC---CCeEEEE
Confidence 88752 11000000 0 0000111111134689999987 89998652 234799999999995 5667776
Q ss_pred cCCCCCCCCCCHHHHhc--cccCcEEEe
Q 007112 471 LSNPTSQSECTAEEAYT--WSKGQAIFA 496 (617)
Q Consensus 471 LSNPt~~aEct~edA~~--wT~GraifA 496 (617)
.|. .++--|+|+- ...|+.-.|
T Consensus 261 vaR----G~lVde~AL~~AL~~g~i~gA 284 (347)
T PLN02928 261 IAR----GGLLDYDAVLAALESGHLGGL 284 (347)
T ss_pred CCC----ccccCHHHHHHHHHcCCeeEE
Confidence 664 4555454432 135665444
No 70
>PRK08223 hypothetical protein; Validated
Probab=91.60 E-value=0.37 Score=51.08 Aligned_cols=57 Identities=16% Similarity=0.087 Sum_probs=46.2
Q ss_pred HHHHHHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeE
Q 007112 316 FELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKI 395 (617)
Q Consensus 316 f~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i 395 (617)
|..-++|..++..|..+-| .+|++.||+|+|+|..|.-+|+.|+.+ |+ .+|
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q------------------~kL~~s~VlIvG~GGLGs~va~~LA~a-----GV------G~i 54 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQ------------------QRLRNSRVAIAGLGGVGGIHLLTLARL-----GI------GKF 54 (287)
T ss_pred ccHHHHHhhhhhhcCHHHH------------------HHHhcCCEEEECCCHHHHHHHHHHHHh-----CC------CeE
Confidence 6677788777666655433 568899999999999999999999875 76 789
Q ss_pred EEEccC
Q 007112 396 WLVDSK 401 (617)
Q Consensus 396 ~lvD~~ 401 (617)
.++|.+
T Consensus 55 ~lvD~D 60 (287)
T PRK08223 55 TIADFD 60 (287)
T ss_pred EEEeCC
Confidence 999988
No 71
>PTZ00325 malate dehydrogenase; Provisional
Probab=91.48 E-value=0.95 Score=48.58 Aligned_cols=106 Identities=23% Similarity=0.253 Sum_probs=69.1
Q ss_pred CCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhc--ccCCCCCHHH
Q 007112 355 LADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH--EHAPIKSLLD 431 (617)
Q Consensus 355 l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~--~~~~~~~L~e 431 (617)
++-.||+|.|| |..|..+|..|+. .|+ ...+.|+|.+ .. ++-.-+|.+... ... ......+..+
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~-----~~~-----~~elvL~Di~-~~-~g~a~Dl~~~~~-~~~v~~~td~~~~~~ 72 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQ-----NPH-----VSELSLYDIV-GA-PGVAADLSHIDT-PAKVTGYADGELWEK 72 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhc-----CCC-----CCEEEEEecC-CC-cccccchhhcCc-CceEEEecCCCchHH
Confidence 34569999999 9999999987752 243 3679999983 21 111112332211 111 1111133478
Q ss_pred HHhccCCcEEEeecCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007112 432 AVKAIKPTMLMGTSGVGKT--------------FTKEVVEAMASFNEKPVIFALSNPT 475 (617)
Q Consensus 432 aV~~vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt 475 (617)
+++. .|++|=+.|.+.. ..++++++|.+++.+.||+.-|||.
T Consensus 73 ~l~g--aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv 128 (321)
T PTZ00325 73 ALRG--ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128 (321)
T ss_pred HhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 8887 8988756555322 4568899999999999999999999
No 72
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=91.43 E-value=0.54 Score=51.25 Aligned_cols=118 Identities=19% Similarity=0.249 Sum_probs=72.2
Q ss_pred HHHHcCCCce--eecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEE
Q 007112 319 LSKYSSSHLV--FNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIW 396 (617)
Q Consensus 319 L~ryr~~~~~--FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~ 396 (617)
++||..++.+ |.-+-| .+|++.||+++|+|..|.-+|..|+.+ |+ ++|.
T Consensus 19 ~~ry~Rqi~l~~~g~~~q------------------~~l~~~~VliiG~GglG~~v~~~La~~-----Gv------g~i~ 69 (370)
T PRK05600 19 LRRTARQLALPGFGIEQQ------------------ERLHNARVLVIGAGGLGCPAMQSLASA-----GV------GTIT 69 (370)
T ss_pred HHHhhcccchhhhCHHHH------------------HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEE
Confidence 5789877665 443322 578899999999999999999999764 76 7899
Q ss_pred EEccCCcccCCcc--------cCCchhchhhhcc-----cCC---------C--CCHHHHHhccCCcEEEeecCCCCCCC
Q 007112 397 LVDSKGLIVSSRK--------ESLQHFKKPWAHE-----HAP---------I--KSLLDAVKAIKPTMLMGTSGVGKTFT 452 (617)
Q Consensus 397 lvD~~GLi~~~R~--------~~L~~~k~~fA~~-----~~~---------~--~~L~eaV~~vkPtvLIG~S~~~g~Ft 452 (617)
++|.+=+ ..+.- +++-..|..-+.. .+. + .++.+.++. .|++|.++.-. =+
T Consensus 70 ivD~D~v-e~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~--~DlVid~~Dn~--~~ 144 (370)
T PRK05600 70 LIDDDTV-DVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRERLTAENAVELLNG--VDLVLDGSDSF--AT 144 (370)
T ss_pred EEeCCEE-ccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhC--CCEEEECCCCH--HH
Confidence 9999832 22110 0111112111110 011 1 145556655 77877766532 25
Q ss_pred HHHHHHHHcCCCCcEEEe
Q 007112 453 KEVVEAMASFNEKPVIFA 470 (617)
Q Consensus 453 eevv~~Ma~~~erPIIFa 470 (617)
+-.|..++.....|.|++
T Consensus 145 r~~in~~~~~~~iP~v~~ 162 (370)
T PRK05600 145 KFLVADAAEITGTPLVWG 162 (370)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 556667776677888876
No 73
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.42 E-value=0.55 Score=49.09 Aligned_cols=58 Identities=28% Similarity=0.287 Sum_probs=42.3
Q ss_pred CCceeecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 325 SHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 325 ~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+..=+|-| ..|++.+++..+..++++++|++|||-+|.+||..+.. .|. ++|+++|+.
T Consensus 102 ~l~G~NTD--------~~G~~~~l~~~~~~~~~k~vlI~GAGGagrAia~~La~-----~G~------~~V~I~~R~ 159 (289)
T PRK12548 102 KLTGHITD--------GLGFVRNLREHGVDVKGKKLTVIGAGGAATAIQVQCAL-----DGA------KEITIFNIK 159 (289)
T ss_pred EEEEEecC--------HHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 34566777 45678888877778889999999998666666555543 364 679999874
No 74
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=91.37 E-value=0.43 Score=50.17 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=43.0
Q ss_pred CceeecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 326 HLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 326 ~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
.+=||=|- .|++.+++..+.++++.+++++|||-||-+|+-.|.+ .|. ++|+++|+.
T Consensus 104 l~G~NTD~--------~Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 160 (283)
T PRK14027 104 TTGHNTDV--------SGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVT-----HGV------QKLQVADLD 160 (283)
T ss_pred EEEEcCCH--------HHHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEcCC
Confidence 44556664 4677777755557888999999999999998877754 365 689999985
No 75
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=91.25 E-value=1.8 Score=47.68 Aligned_cols=157 Identities=14% Similarity=0.146 Sum_probs=98.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchh
Q 007112 336 TASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 415 (617)
Q Consensus 336 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~ 415 (617)
.|=-+++.+++..|..|..|.+.++.|+|.|..|..+|+.+... |+ +++.+|... .. . .
T Consensus 95 VAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~-----G~-------~V~~~Dp~~------~~-~-~- 153 (381)
T PRK00257 95 VVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGL-----GW-------KVLVCDPPR------QE-A-E- 153 (381)
T ss_pred HHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECCcc------cc-c-c-
Confidence 44567899999999999999999999999999999999998643 65 577888631 00 0 0
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEee---c-----CCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc
Q 007112 416 KKPWAHEHAPIKSLLDAVKAIKPTMLMGT---S-----GVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYT 487 (617)
Q Consensus 416 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~---S-----~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~ 487 (617)
......+|.|+++. .|+++=. + ..-++|+++.+..|. +..++.=.|. .++--++|+.
T Consensus 154 ------~~~~~~~l~ell~~--aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk---~gailIN~aR----G~vVde~AL~ 218 (381)
T PRK00257 154 ------GDGDFVSLERILEE--CDVISLHTPLTKEGEHPTRHLLDEAFLASLR---PGAWLINASR----GAVVDNQALR 218 (381)
T ss_pred ------cCccccCHHHHHhh--CCEEEEeCcCCCCccccccccCCHHHHhcCC---CCeEEEECCC----CcccCHHHHH
Confidence 01123579999886 7877611 1 124799999999995 6678876665 4444444442
Q ss_pred c--ccCcEEEeeCCCC--CcceeCCeeeccCCCCcccccchhhHHHHHhC
Q 007112 488 W--SKGQAIFASGSPF--DPVEYNGKVFVPGQGNNAYIFPGLGLGLIISG 533 (617)
Q Consensus 488 w--T~GraifASGSPF--~pv~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~ 533 (617)
. ..|+...|-=-=| +|. .+.... ..|..+-|=++-....++
T Consensus 219 ~aL~~g~i~~a~LDV~e~EP~-~~~~L~----~~nvi~TPHiAg~s~e~~ 263 (381)
T PRK00257 219 EALLSGEDLDAVLDVWEGEPQ-IDLELA----DLCTIATPHIAGYSLDGK 263 (381)
T ss_pred HHHHhCCCcEEEEeCCCCCCC-CChhhh----hCCEEEcCccccCCHHHH
Confidence 1 2454333311111 121 121111 137788887775444443
No 76
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.17 E-value=0.47 Score=50.44 Aligned_cols=127 Identities=16% Similarity=0.253 Sum_probs=78.1
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc-cCCCCCHHHHHhc
Q 007112 357 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAPIKSLLDAVKA 435 (617)
Q Consensus 357 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~-~~~~~~L~eaV~~ 435 (617)
..||.|+|||..|..+|-+|+. .|+ ...|.|+|.+-=..++-.-+|.+.. +|-+. .-..++. +.+++
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~-----~~~-----~~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~~-~~~~~ 73 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVN-----QGI-----ADELVIIDINKEKAEGDAMDLSHAV-PFTSPTKIYAGDY-SDCKD 73 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCchhHHHHHHHHhhc-cccCCeEEEeCCH-HHhCC
Confidence 3599999999999999998764 365 3679999974211111111233222 22111 0011344 45666
Q ss_pred cCCcEEEeecCCCCC--CC------------HHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc--cCcEEEeeCC
Q 007112 436 IKPTMLMGTSGVGKT--FT------------KEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWS--KGQAIFASGS 499 (617)
Q Consensus 436 vkPtvLIG~S~~~g~--Ft------------eevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT--~GraifASGS 499 (617)
.|++|=+.+.+.. -| +++++.+.+++...+|+-.|||. +....-+++++ .-+=+|++|.
T Consensus 74 --adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~---d~~~~~~~k~sg~p~~~viG~gt 148 (315)
T PRK00066 74 --ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPV---DILTYATWKLSGFPKERVIGSGT 148 (315)
T ss_pred --CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcH---HHHHHHHHHHhCCCHHHEeecCc
Confidence 8999877766421 11 46788888999999999999998 34445566654 2223666664
Q ss_pred C
Q 007112 500 P 500 (617)
Q Consensus 500 P 500 (617)
-
T Consensus 149 ~ 149 (315)
T PRK00066 149 S 149 (315)
T ss_pred h
Confidence 3
No 77
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=91.17 E-value=0.81 Score=48.82 Aligned_cols=125 Identities=17% Similarity=0.257 Sum_probs=75.0
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhccc---CCCCCHHHHH
Q 007112 357 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH---APIKSLLDAV 433 (617)
Q Consensus 357 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~---~~~~~L~eaV 433 (617)
-.||.|+|||..|.++|.+++. .|+ ..+.|+|.+-=...+..-++.+. ..+.... ....++ +++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~-----~gl------~~i~LvDi~~~~~~~~~ld~~~~-~~~~~~~~~I~~~~d~-~~l 72 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVL-----KNL------GDVVLFDIVKNIPQGKALDISHS-NVIAGSNSKVIGTNNY-EDI 72 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----CCC------CeEEEEeCCCchhhHHHHHHHhh-hhccCCCeEEEECCCH-HHh
Confidence 3699999999999999998653 365 23999997532222111112221 1111111 112456 567
Q ss_pred hccCCcEEEeecCCCCCC-------------------CHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccc--Cc
Q 007112 434 KAIKPTMLMGTSGVGKTF-------------------TKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSK--GQ 492 (617)
Q Consensus 434 ~~vkPtvLIG~S~~~g~F-------------------teevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~--Gr 492 (617)
+. .|++|=+.+.++.- -+++++.|.+++..-+++--|||.+ .....+++.++ -+
T Consensus 73 ~~--aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~d---i~t~~~~~~sg~p~~ 147 (321)
T PTZ00082 73 AG--SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLD---VMVKLLQEHSGLPKN 147 (321)
T ss_pred CC--CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH---HHHHHHHHhcCCChh
Confidence 66 89998666554321 2478888888998779999999982 22334444442 13
Q ss_pred EEEeeCC
Q 007112 493 AIFASGS 499 (617)
Q Consensus 493 aifASGS 499 (617)
-+|++|.
T Consensus 148 rviGlgt 154 (321)
T PTZ00082 148 KVCGMAG 154 (321)
T ss_pred hEEEecC
Confidence 4666663
No 78
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=91.15 E-value=1.3 Score=50.90 Aligned_cols=162 Identities=21% Similarity=0.218 Sum_probs=108.3
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcc--cCCcccCCchhchhhhcccCCCCCHHHHH
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI--VSSRKESLQHFKKPWAHEHAPIKSLLDAV 433 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi--~~~R~~~L~~~k~~fA~~~~~~~~L~eaV 433 (617)
.+--++|+|.|..|+|||.-++. .|+ ++.||+++-+- |++|..+|-+--..|+.. -+.+=..|++
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~-----RGl-------~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~-~e~~lvrEal 77 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAG-----RGL-------KVALVEKGDLASGTSSRSTKLIHGGLRYLEQ-YEFSLVREAL 77 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHh-----CCC-------eEEEEecCcccCcccCccccCccchhhhhhh-cchHHHHHHH
Confidence 55679999999999999998865 387 47899998776 566665677767777753 2232244665
Q ss_pred hccCCcEEEeecCCCCCCCHHHHHHHHcCC--CCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCeee
Q 007112 434 KAIKPTMLMGTSGVGKTFTKEVVEAMASFN--EKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGKVF 511 (617)
Q Consensus 434 ~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~--erPIIFaLSNPt~~aEct~edA~~wT~GraifASGSPF~pv~~~Gk~~ 511 (617)
+. .+++..+|-|+ +.|.+||..+=+ .
T Consensus 78 ~E-----------------r~vL~~~APH~v~p~~~~lp~~~~~--------------~--------------------- 105 (532)
T COG0578 78 AE-----------------REVLLRIAPHLVEPLPFLLPHLPGL--------------R--------------------- 105 (532)
T ss_pred HH-----------------HHHHHHhCccccccCcCeEeccCCc--------------c---------------------
Confidence 53 47888888765 445566655420 0
Q ss_pred ccCCCCcccccchhhHHHHHhCC-ccc--CHHHHHHHHHHHHhccCcccCCCCCccCCCCChhhhHHHHHHHHHHHHHHc
Q 007112 512 VPGQGNNAYIFPGLGLGLIISGA-IRV--RDEMLLAASEALAAQVTQEHFDKGLIYPPFTNIRKISAHIAAKVAAKAYDL 588 (617)
Q Consensus 512 ~p~Q~NN~yiFPGiglG~l~s~a-~~I--td~M~laAA~aLA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~ 588 (617)
--.+++.|+.+...+++. +.. +..+..+++..+.-.+.++-+..+..||.-.. .+ ++...++++.|.+.
T Consensus 106 -----~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~v-dd--aRLv~~~a~~A~~~ 177 (532)
T COG0578 106 -----DAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVV-DD--ARLVAANARDAAEH 177 (532)
T ss_pred -----cchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEcccee-ch--HHHHHHHHHHHHhc
Confidence 025678889999999993 333 22233335666666676766655888997653 22 26667888888888
Q ss_pred CC
Q 007112 589 GL 590 (617)
Q Consensus 589 Gl 590 (617)
|-
T Consensus 178 Ga 179 (532)
T COG0578 178 GA 179 (532)
T ss_pred cc
Confidence 74
No 79
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.06 E-value=0.56 Score=48.50 Aligned_cols=126 Identities=22% Similarity=0.268 Sum_probs=64.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchh-hhc---c-----------
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKP-WAH---E----------- 422 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~-fA~---~----------- 422 (617)
+||.|+|+|..|.+||..++.. | .+++++|.+ ..+-+.+.....+ +.. .
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-----G-------~~V~~~d~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 65 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-----G-------FQTTLVDIK----QEQLESAQQEIASIFEQGVARGKLTEAARQAA 65 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-----C-------CcEEEEeCC----HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 5799999999999999988653 5 358888875 1110111110000 000 0
Q ss_pred ---cCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCC
Q 007112 423 ---HAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGS 499 (617)
Q Consensus 423 ---~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~GraifASGS 499 (617)
.....++.++++. .|++|=+-...-...+++++.+.+......|++ ||.++ ..+++.-+..+-..=|....
T Consensus 66 ~~~i~~~~~~~~~~~~--aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~-~~tSt---~~~~~l~~~~~~~~r~~g~h 139 (288)
T PRK09260 66 LARLSYSLDLKAAVAD--ADLVIEAVPEKLELKKAVFETADAHAPAECYIA-TNTST---MSPTEIASFTKRPERVIAMH 139 (288)
T ss_pred HhCeEEeCcHHHhhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEE-EcCCC---CCHHHHHhhcCCcccEEEEe
Confidence 0112467777776 777774433221123455555555554444443 33322 33444444333222244455
Q ss_pred CCCcce
Q 007112 500 PFDPVE 505 (617)
Q Consensus 500 PF~pv~ 505 (617)
+|.||.
T Consensus 140 ~~~Pv~ 145 (288)
T PRK09260 140 FFNPVH 145 (288)
T ss_pred cCCCcc
Confidence 666663
No 80
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.99 E-value=0.43 Score=49.98 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=26.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
.+|.|+|+|..|.++|..+... |. +++++|+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~-----G~-------~V~v~d~~ 34 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA-----GH-------EVRLWDAD 34 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC-----CC-------eeEEEeCC
Confidence 3799999999999999988753 53 57888875
No 81
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=90.99 E-value=1.5 Score=44.32 Aligned_cols=103 Identities=21% Similarity=0.316 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHhC---------CCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCC
Q 007112 338 SVVLAGILSALKLVG---------GTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSS 407 (617)
Q Consensus 338 aV~LAgll~Alr~~g---------~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~ 407 (617)
-+|-.|++-=|+..+ .+++.++++++|-+. .|.-+|.||.. .| ..+.+||++|.....
T Consensus 34 PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~-----~~-------AtVti~~~~~~~~~~ 101 (197)
T cd01079 34 PCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLAN-----DG-------ARVYSVDINGIQVFT 101 (197)
T ss_pred CCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEEecCcccccc
Confidence 445556666666554 489999999999875 56667776643 24 358899999988866
Q ss_pred cccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCC-CCHHHHH
Q 007112 408 RKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKT-FTKEVVE 457 (617)
Q Consensus 408 R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~-Fteevv~ 457 (617)
+...+.+.+.+. .....+|.|.+++ +|++|-..|.++. ++.|+|+
T Consensus 102 ~~~~~~hs~t~~---~~~~~~l~~~~~~--ADIVIsAvG~~~~~i~~d~ik 147 (197)
T cd01079 102 RGESIRHEKHHV---TDEEAMTLDCLSQ--SDVVITGVPSPNYKVPTELLK 147 (197)
T ss_pred cccccccccccc---cchhhHHHHHhhh--CCEEEEccCCCCCccCHHHcC
Confidence 643332211100 0111248899987 9999999999998 8999986
No 82
>PRK15076 alpha-galactosidase; Provisional
Probab=90.90 E-value=0.65 Score=51.62 Aligned_cols=129 Identities=15% Similarity=0.134 Sum_probs=74.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCch-hchhhhcccCC-----CCCHHH
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH-FKKPWAHEHAP-----IKSLLD 431 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~-~k~~fA~~~~~-----~~~L~e 431 (617)
.||.|+|||+.|. +..++..+....++ +-..++|+|.+ .+|.+.... .+.-++..... ..++.+
T Consensus 2 ~KIaIIGaGsvg~--~~~~~~~i~~~~~l----~~~evvLvDid----~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~e 71 (431)
T PRK15076 2 PKITFIGAGSTVF--TKNLLGDILSVPAL----RDAEIALMDID----PERLEESEIVARKLAESLGASAKITATTDRRE 71 (431)
T ss_pred cEEEEECCCHHHh--HHHHHHHHhhCccC----CCCEEEEECCC----HHHHHHHHHHHHHHHHhcCCCeEEEEECCHHH
Confidence 5899999999853 33343333322233 23579999975 222110000 01111111111 357888
Q ss_pred HHhccCCcEEEeecCCCCCC-------------------------------------CHHHHHHHHcCCCCcEEEecCCC
Q 007112 432 AVKAIKPTMLMGTSGVGKTF-------------------------------------TKEVVEAMASFNEKPVIFALSNP 474 (617)
Q Consensus 432 aV~~vkPtvLIG~S~~~g~F-------------------------------------teevv~~Ma~~~erPIIFaLSNP 474 (617)
+++. .|++|=+.++||.- -.++++.|.++|+.-+|+-.|||
T Consensus 72 al~d--ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP 149 (431)
T PRK15076 72 ALQG--ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNP 149 (431)
T ss_pred HhCC--CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCCh
Confidence 8887 78877666555321 14778888899999999999999
Q ss_pred CCCCCCCHHHHhccccCcEEEeeC-CCCC
Q 007112 475 TSQSECTAEEAYTWSKGQAIFASG-SPFD 502 (617)
Q Consensus 475 t~~aEct~edA~~wT~GraifASG-SPF~ 502 (617)
.. +..+-++.+++ .-+|.+| +|+.
T Consensus 150 ~d---ivt~~~~~~~~-~rviG~c~~~~~ 174 (431)
T PRK15076 150 MA---MNTWAMNRYPG-IKTVGLCHSVQG 174 (431)
T ss_pred HH---HHHHHHhcCCC-CCEEEECCCHHH
Confidence 82 22223335543 3477777 6643
No 83
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.55 E-value=2.4 Score=44.47 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=26.5
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 357 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 357 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
..||.|+|+|..|.++|..+... | .+++++|+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~-----G-------~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN-----G-------HRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 35899999999999999999764 5 357777765
No 84
>PTZ00117 malate dehydrogenase; Provisional
Probab=90.51 E-value=1.2 Score=47.36 Aligned_cols=126 Identities=19% Similarity=0.312 Sum_probs=77.0
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhccc---CCCCCHHHH
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH---APIKSLLDA 432 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~---~~~~~L~ea 432 (617)
+..||.|+|||+.|.++|.+++. .|+ ..+.|+|.+-=..++..-++.+. ..+.... ....+++ +
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~-----~~~------~~l~L~Di~~~~~~g~~lDl~~~-~~~~~~~~~i~~~~d~~-~ 70 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQ-----KNL------GDVVLYDVIKGVPQGKALDLKHF-STLVGSNINILGTNNYE-D 70 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHH-----CCC------CeEEEEECCCccchhHHHHHhhh-ccccCCCeEEEeCCCHH-H
Confidence 44699999999999999988764 254 24999997521111111012222 1111110 1124665 6
Q ss_pred HhccCCcEEEeecCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccc--CcEEEe
Q 007112 433 VKAIKPTMLMGTSGVGKT--------------FTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSK--GQAIFA 496 (617)
Q Consensus 433 V~~vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~--GraifA 496 (617)
++. .|++|=+.+.+.. .-+++.+.|.++++.-+++=.|||. ......+.++++ =.-+|+
T Consensus 71 l~~--ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~---di~t~~~~~~s~~p~~rviG 145 (319)
T PTZ00117 71 IKD--SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPL---DCMVKVFQEKSGIPSNKICG 145 (319)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChH---HHHHHHHHHhhCCCcccEEE
Confidence 666 8988866665432 2348899999999999888889998 233455555552 133777
Q ss_pred eCC
Q 007112 497 SGS 499 (617)
Q Consensus 497 SGS 499 (617)
+|+
T Consensus 146 ~gt 148 (319)
T PTZ00117 146 MAG 148 (319)
T ss_pred ecc
Confidence 774
No 85
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.46 E-value=1.1 Score=47.59 Aligned_cols=84 Identities=18% Similarity=0.312 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCceEEEeCcChH-HHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCch
Q 007112 336 TASVVLAGILSALKLVGGTLADQTFLFLGAGEA-GTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 414 (617)
Q Consensus 336 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGsA-g~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~ 414 (617)
-.-+|-.|++.=++..|.++++++++++|.|.- |.-+|.+|.. .|. .+.+|+++
T Consensus 137 ~~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~a-------tVt~~hs~------------- 191 (285)
T PRK14189 137 FRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQ-----AGA-------TVTICHSK------------- 191 (285)
T ss_pred CcCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEecCC-------------
Confidence 456778889999999999999999999999998 9999999864 242 45555442
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007112 415 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 457 (617)
Q Consensus 415 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 457 (617)
..+|.+.+++ .|++|-..+.++.|+.++++
T Consensus 192 -----------t~~l~~~~~~--ADIVV~avG~~~~i~~~~ik 221 (285)
T PRK14189 192 -----------TRDLAAHTRQ--ADIVVAAVGKRNVLTADMVK 221 (285)
T ss_pred -----------CCCHHHHhhh--CCEEEEcCCCcCccCHHHcC
Confidence 2357788887 99999999999999997775
No 86
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.46 E-value=0.37 Score=51.85 Aligned_cols=39 Identities=23% Similarity=0.346 Sum_probs=34.3
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCC
Q 007112 353 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 402 (617)
Q Consensus 353 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~G 402 (617)
.+|++.+|+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+=
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~a-----Gv------g~i~lvD~D~ 58 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRA-----GI------GKLTIADRDY 58 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCc
Confidence 468889999999999999999999875 76 7899999983
No 87
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=90.44 E-value=0.48 Score=51.29 Aligned_cols=37 Identities=27% Similarity=0.404 Sum_probs=32.6
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 354 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 354 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+|++.||+++|+|..|..||..|+.+ |+ ++|.++|.+
T Consensus 132 ~l~~~~VlvvG~GG~Gs~ia~~La~~-----Gv------g~i~lvD~d 168 (376)
T PRK08762 132 RLLEARVLLIGAGGLGSPAALYLAAA-----GV------GTLGIVDHD 168 (376)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 57889999999999999999999764 76 789999987
No 88
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.43 E-value=1.2 Score=47.71 Aligned_cols=92 Identities=14% Similarity=0.251 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchh
Q 007112 337 ASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 415 (617)
Q Consensus 337 aaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~ 415 (617)
.-+|-+|++.=++-.|.++++++|+|+|.| ..|..+|.+|... | ..+.+++++ .
T Consensus 139 ~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~-----g-------atVtv~~~~--------t----- 193 (301)
T PRK14194 139 TPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQA-----H-------CSVTVVHSR--------S----- 193 (301)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHC-----C-------CEEEEECCC--------C-----
Confidence 466788888889999999999999999996 9999999999753 5 357777654 0
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 007112 416 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALS 472 (617)
Q Consensus 416 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 472 (617)
.++.|++++ .|++|=.-+.++.+++++++ +.-||.=.|
T Consensus 194 -----------~~l~e~~~~--ADIVIsavg~~~~v~~~~ik------~GaiVIDvg 231 (301)
T PRK14194 194 -----------TDAKALCRQ--ADIVVAAVGRPRLIDADWLK------PGAVVIDVG 231 (301)
T ss_pred -----------CCHHHHHhc--CCEEEEecCChhcccHhhcc------CCcEEEEec
Confidence 168899987 99999999999888888743 555666666
No 89
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=90.27 E-value=0.68 Score=47.98 Aligned_cols=88 Identities=20% Similarity=0.298 Sum_probs=54.4
Q ss_pred HHHHHHHHHH-hCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhh
Q 007112 341 LAGILSALKL-VGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPW 419 (617)
Q Consensus 341 LAgll~Alr~-~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~f 419 (617)
..|++++++. .+.++++.+++++|||.+|-+++..+.. .|+ .+++++++. .++ .......+
T Consensus 106 ~~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~-----~g~------~~V~v~~R~----~~~---a~~l~~~~ 167 (278)
T PRK00258 106 GIGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLD-----LGV------AEITIVNRT----VER---AEELAKLF 167 (278)
T ss_pred HHHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEEeCC----HHH---HHHHHHHh
Confidence 3467777774 5778999999999999888888877763 364 679999885 222 22222222
Q ss_pred hccc-CCC-CCHHHHHhccCCcEEEeecCCC
Q 007112 420 AHEH-API-KSLLDAVKAIKPTMLMGTSGVG 448 (617)
Q Consensus 420 A~~~-~~~-~~L~eaV~~vkPtvLIG~S~~~ 448 (617)
.... -.. .++.+.+.. .|++|-++..+
T Consensus 168 ~~~~~~~~~~~~~~~~~~--~DivInaTp~g 196 (278)
T PRK00258 168 GALGKAELDLELQEELAD--FDLIINATSAG 196 (278)
T ss_pred hhccceeecccchhcccc--CCEEEECCcCC
Confidence 1110 011 123344443 89999887765
No 90
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=90.26 E-value=0.75 Score=50.81 Aligned_cols=127 Identities=15% Similarity=0.197 Sum_probs=72.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhccc------CCCCCHHHH
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH------APIKSLLDA 432 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~------~~~~~L~ea 432 (617)
||.|+|||+.|.+.+- +..+.....+ +-..++|+|.+ .++.+.+...-+.++... ....++.++
T Consensus 2 KIaIIGaGs~G~a~a~--~~~i~~~~~~----~g~eV~L~Did----~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~ea 71 (423)
T cd05297 2 KIAFIGAGSVVFTKNL--VGDLLKTPEL----SGSTIALMDID----EERLETVEILAKKIVEELGAPLKIEATTDRREA 71 (423)
T ss_pred eEEEECCChHHhHHHH--HHHHhcCCCC----CCCEEEEECCC----HHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 7999999999887653 1111111111 23579999975 222111111111121111 113578999
Q ss_pred HhccCCcEEEeecCCC---------------CCCC---------------------HHHHHHHHcCCCCcEEEecCCCCC
Q 007112 433 VKAIKPTMLMGTSGVG---------------KTFT---------------------KEVVEAMASFNEKPVIFALSNPTS 476 (617)
Q Consensus 433 V~~vkPtvLIG~S~~~---------------g~Ft---------------------eevv~~Ma~~~erPIIFaLSNPt~ 476 (617)
++. .|++|=+-..+ |+|. .++.+.|.++|++.+++=.|||.
T Consensus 72 l~~--AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv- 148 (423)
T cd05297 72 LDG--ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPM- 148 (423)
T ss_pred hcC--CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChH-
Confidence 987 88877554432 1221 27777777888999999999998
Q ss_pred CCCCCHHHHhccccCcEEEeeC-CCC
Q 007112 477 QSECTAEEAYTWSKGQAIFASG-SPF 501 (617)
Q Consensus 477 ~aEct~edA~~wT~GraifASG-SPF 501 (617)
..+ .+-+++.++ .-++.+| +|+
T Consensus 149 -~i~-t~~~~k~~~-~rviG~c~~~~ 171 (423)
T cd05297 149 -AEL-TWALNRYTP-IKTVGLCHGVQ 171 (423)
T ss_pred -HHH-HHHHHHhCC-CCEEEECCcHH
Confidence 322 233446665 4467776 543
No 91
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=89.94 E-value=3 Score=45.92 Aligned_cols=117 Identities=15% Similarity=0.213 Sum_probs=83.4
Q ss_pred cchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCc
Q 007112 334 QGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 413 (617)
Q Consensus 334 QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~ 413 (617)
+..|=-+++.+++..|..|..|.+.++.|+|.|..|--+|+.+... |+ ++..+|.. +.+ .
T Consensus 93 ~aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~-----G~-------~V~~~dp~------~~~--~ 152 (378)
T PRK15438 93 IAVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEAL-----GI-------KTLLCDPP------RAD--R 152 (378)
T ss_pred hHHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCc------ccc--c
Confidence 3456668899999889889999999999999999999999998643 65 57778853 111 0
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEe---ecC-----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHH
Q 007112 414 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMG---TSG-----VGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEA 485 (617)
Q Consensus 414 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG---~S~-----~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA 485 (617)
. ......+|.|+++. .|+++= ++. .-++|+++.++.|. +..|+.=.|. -+.-=|+|
T Consensus 153 ~-------~~~~~~~L~ell~~--sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk---~gailIN~aR----G~vVDe~A 216 (378)
T PRK15438 153 G-------DEGDFRSLDELVQE--ADILTFHTPLFKDGPYKTLHLADEKLIRSLK---PGAILINACR----GAVVDNTA 216 (378)
T ss_pred c-------cccccCCHHHHHhh--CCEEEEeCCCCCCcccccccccCHHHHhcCC---CCcEEEECCC----chhcCHHH
Confidence 0 00123579999976 898872 121 34689999999996 6778876654 45555555
Q ss_pred h
Q 007112 486 Y 486 (617)
Q Consensus 486 ~ 486 (617)
+
T Consensus 217 L 217 (378)
T PRK15438 217 L 217 (378)
T ss_pred H
Confidence 4
No 92
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.84 E-value=1.4 Score=46.84 Aligned_cols=84 Identities=14% Similarity=0.249 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCch
Q 007112 336 TASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 414 (617)
Q Consensus 336 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~ 414 (617)
-.-+|-.|++..++-.+.+|++.+++++|.|. -|-.+|.+|.. .| ..+.+|+++
T Consensus 143 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~-------atVtv~hs~------------- 197 (287)
T PRK14176 143 LVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLN-----RN-------ATVSVCHVF------------- 197 (287)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CC-------CEEEEEecc-------------
Confidence 45678899999999999999999999999998 89999998864 24 246677642
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007112 415 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 457 (617)
Q Consensus 415 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 457 (617)
.++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 198 -----------T~~l~~~~~~--ADIvv~AvG~p~~i~~~~vk 227 (287)
T PRK14176 198 -----------TDDLKKYTLD--ADILVVATGVKHLIKADMVK 227 (287)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCccccCHHHcC
Confidence 1257788887 99999999999999999775
No 93
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.81 E-value=1 Score=47.73 Aligned_cols=84 Identities=20% Similarity=0.332 Sum_probs=68.3
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCc
Q 007112 335 GTASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 413 (617)
Q Consensus 335 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~ 413 (617)
+-.-+|-.|++.=++-.+.++++.+++++|-+ .-|--+|.++... | ..+..++++
T Consensus 130 ~~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~-----~-------atVtv~hs~------------ 185 (279)
T PRK14178 130 GFAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNA-----D-------ATVTICHSK------------ 185 (279)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhC-----C-------CeeEEEecC------------
Confidence 34567888889999999999999999999999 7888888877532 4 346666653
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHH
Q 007112 414 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVV 456 (617)
Q Consensus 414 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv 456 (617)
..+|.+.++. +|++|+.-+.++.+|+++|
T Consensus 186 ------------t~~L~~~~~~--ADIvI~Avgk~~lv~~~~v 214 (279)
T PRK14178 186 ------------TENLKAELRQ--ADILVSAAGKAGFITPDMV 214 (279)
T ss_pred ------------hhHHHHHHhh--CCEEEECCCcccccCHHHc
Confidence 1368899987 9999999999999999997
No 94
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=89.79 E-value=0.84 Score=50.71 Aligned_cols=125 Identities=16% Similarity=0.258 Sum_probs=74.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhcc-CCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc-cCC-----CCCHH
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQT-KAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAP-----IKSLL 430 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~-G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~-~~~-----~~~L~ 430 (617)
.||+|+||||+ -.-.|+..+.+.. .++ -..|||+|-+ ..|.+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGgGS~---~tp~li~~l~~~~~~l~----~~ei~L~Did----~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~ 69 (425)
T cd05197 1 VKIAIIGGGSS---FTPELVSGLLKTPEELP----ISEVTLYDID----EERLDIILTIAKRYVEEVGADIKFEKTMDLE 69 (425)
T ss_pred CEEEEECCchH---hHHHHHHHHHcChhhCC----CCEEEEEcCC----HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 38999999995 4444445444322 342 4789999976 44432222222233322 112 25788
Q ss_pred HHHhccCCcEEEeecC--------------------------CCCCCC--------HHHHHHHHcCCCCcEEEecCCCCC
Q 007112 431 DAVKAIKPTMLMGTSG--------------------------VGKTFT--------KEVVEAMASFNEKPVIFALSNPTS 476 (617)
Q Consensus 431 eaV~~vkPtvLIG~S~--------------------------~~g~Ft--------eevv~~Ma~~~erPIIFaLSNPt~ 476 (617)
||++. +|..|-.-. .||.|. .++++.|.++|+.-+|+-.|||.
T Consensus 70 ~Al~g--ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~- 146 (425)
T cd05197 70 DAIID--ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPA- 146 (425)
T ss_pred HHhCC--CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChH-
Confidence 99887 777664433 334443 38899999999999999999998
Q ss_pred CCCCCHHHHhccccCcEEEeeC
Q 007112 477 QSECTAEEAYTWSKGQAIFASG 498 (617)
Q Consensus 477 ~aEct~edA~~wT~GraifASG 498 (617)
.-+ .+-+++++...-++.+|
T Consensus 147 -di~-t~a~~~~~p~~rviG~c 166 (425)
T cd05197 147 -GEV-TEAVRRYVPPEKAVGLC 166 (425)
T ss_pred -HHH-HHHHHHhCCCCcEEEEC
Confidence 222 23334555333344443
No 95
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=89.77 E-value=7.2 Score=40.43 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=26.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
.+|.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-----GY-------DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5899999999999999988653 63 58899875
No 96
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=89.33 E-value=0.83 Score=48.34 Aligned_cols=85 Identities=31% Similarity=0.441 Sum_probs=54.8
Q ss_pred HHHHHHHHhC--CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhh
Q 007112 343 GILSALKLVG--GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWA 420 (617)
Q Consensus 343 gll~Alr~~g--~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA 420 (617)
|++.+|+-.+ ...+++++|++|||-|+.+|+-.|.+. |. ++|+++++. .+|...| ...|.
T Consensus 110 G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-----g~------~~i~V~NRt----~~ra~~L---a~~~~ 171 (283)
T COG0169 110 GFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-----GA------KRITVVNRT----RERAEEL---ADLFG 171 (283)
T ss_pred HHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEEeCC----HHHHHHH---HHHhh
Confidence 5677888766 456689999999999999998887653 64 789999984 4443223 22333
Q ss_pred ccc-----CCCCCHHHHHhccCCcEEEeecCCC
Q 007112 421 HEH-----APIKSLLDAVKAIKPTMLMGTSGVG 448 (617)
Q Consensus 421 ~~~-----~~~~~L~eaV~~vkPtvLIG~S~~~ 448 (617)
+.. ....++.+ .+ ..|+||=++..|
T Consensus 172 ~~~~~~~~~~~~~~~~-~~--~~dliINaTp~G 201 (283)
T COG0169 172 ELGAAVEAAALADLEG-LE--EADLLINATPVG 201 (283)
T ss_pred hccccccccccccccc-cc--ccCEEEECCCCC
Confidence 211 11122222 21 579999777765
No 97
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=89.21 E-value=0.66 Score=42.60 Aligned_cols=35 Identities=34% Similarity=0.521 Sum_probs=30.7
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
++.||+++|+|+-|.-+|+.|+.. |+ ++|.++|.+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~-----Gv------~~i~lvD~d 35 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARS-----GV------GKITLVDDD 35 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHH-----TT------SEEEEEESS
T ss_pred CCCEEEEECcCHHHHHHHHHHHHh-----CC------CceeecCCc
Confidence 478999999999999999999875 76 889999998
No 98
>PRK06223 malate dehydrogenase; Reviewed
Probab=89.21 E-value=0.92 Score=47.26 Aligned_cols=120 Identities=20% Similarity=0.337 Sum_probs=72.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc----c-----CCCCC
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE----H-----APIKS 428 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~----~-----~~~~~ 428 (617)
.||.|+|||..|.++|..++. .|+ . .++++|.+ .++ +......+.+. . ....+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~-----~~~-----~-ev~L~D~~----~~~---~~~~~~dl~~~~~~~~~~~~i~~~~d 64 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLAL-----KEL-----G-DVVLFDIV----EGV---PQGKALDIAEAAPVEGFDTKITGTND 64 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----e-EEEEEECC----Cch---hHHHHHHHHhhhhhcCCCcEEEeCCC
Confidence 489999999999999998764 254 2 79999983 221 11111111110 0 11235
Q ss_pred HHHHHhccCCcEEEeecCCCC--------------CCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccC---
Q 007112 429 LLDAVKAIKPTMLMGTSGVGK--------------TFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKG--- 491 (617)
Q Consensus 429 L~eaV~~vkPtvLIG~S~~~g--------------~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~G--- 491 (617)
. ++++. .|++|=+.+.+. -.-+++++.|.+.+...+++-.|||. .....-+++++ |
T Consensus 65 ~-~~~~~--aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~---d~~~~~~~~~s-~~~~ 137 (307)
T PRK06223 65 Y-EDIAG--SDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPV---DAMTYVALKES-GFPK 137 (307)
T ss_pred H-HHHCC--CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHh-CCCc
Confidence 6 55665 898884333332 12356777788899999888889997 22333444444 4
Q ss_pred cEEEeeCCCCC
Q 007112 492 QAIFASGSPFD 502 (617)
Q Consensus 492 raifASGSPF~ 502 (617)
+-+|++|.-.+
T Consensus 138 ~~viG~gt~ld 148 (307)
T PRK06223 138 NRVIGMAGVLD 148 (307)
T ss_pred ccEEEeCCCcH
Confidence 45888885443
No 99
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.03 E-value=1.6 Score=46.83 Aligned_cols=110 Identities=19% Similarity=0.179 Sum_probs=70.1
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCc--ccCCcccCCchhchhhhcccCCCCCHHHHHhc
Q 007112 359 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL--IVSSRKESLQHFKKPWAHEHAPIKSLLDAVKA 435 (617)
Q Consensus 359 riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GL--i~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~ 435 (617)
||.|.|| |..|..+|..|+. .|+-.|+-...+.|+|.+.- ..++..-+|.+..-++.+...-..+..+++++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~-----~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~ 76 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS-----GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD 76 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC
Confidence 7999999 9999999987764 35532223347999998741 11221112444332332221111467788888
Q ss_pred cCCcEEEeecCCCCC--CC------------HHHHHHHHcCC-CCcEEEecCCCC
Q 007112 436 IKPTMLMGTSGVGKT--FT------------KEVVEAMASFN-EKPVIFALSNPT 475 (617)
Q Consensus 436 vkPtvLIG~S~~~g~--Ft------------eevv~~Ma~~~-erPIIFaLSNPt 475 (617)
.|++|=+.|.+.. -| +++++.|++++ +.-||+-.|||-
T Consensus 77 --aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 129 (323)
T cd00704 77 --VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPA 129 (323)
T ss_pred --CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcH
Confidence 8888866555421 23 57788888894 999999999997
No 100
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=88.98 E-value=12 Score=41.46 Aligned_cols=95 Identities=25% Similarity=0.382 Sum_probs=55.3
Q ss_pred eeeEEeecCCCccccccCcccccccccCCChhhHHHHHHHHH---------HHHHHhc-CCCeeeeeecCCCCcHHHHHH
Q 007112 251 CLPITIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFM---------TAVKQNY-GEKVLIQFEDFANHNAFELLS 320 (617)
Q Consensus 251 ~LPI~LDvGTnNe~LL~DplYlG~r~~R~~g~eY~~fidefv---------~av~~~f-Gp~~lIqfEDf~~~~Af~lL~ 320 (617)
.+|.+.+.-..=+++.+||-+ -+||+.++.+++ ..+.+.+ |.+..+-.||+....+|++-
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~f---------~~~~~~~~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r- 92 (397)
T PRK04346 23 LMPALEELEEAYEKAKNDPEF---------QAELDYLLKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKIN- 92 (397)
T ss_pred HHHHHHHHHHHHHHHhcCHHH---------HHHHHHHHHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHH-
Confidence 344444444444566777754 256666666654 2355566 46777888888777777541
Q ss_pred HHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCCceEEE-eCcChHHHHHHHHHHH
Q 007112 321 KYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLF-LGAGEAGTGIAELIAL 378 (617)
Q Consensus 321 ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~-~GAGsAg~GIA~li~~ 378 (617)
.++.-++.|. ..|+ .+++. -|||..|+++|-....
T Consensus 93 ------------------~al~~~l~A~-~~Gk----~~vIaetgaGnhG~A~A~~aa~ 128 (397)
T PRK04346 93 ------------------NVLGQALLAK-RMGK----KRIIAETGAGQHGVATATAAAL 128 (397)
T ss_pred ------------------HHHHHHHHHH-HcCC----CeEEEecCcHHHHHHHHHHHHH
Confidence 1222233332 3343 35666 6999999888876654
No 101
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=88.86 E-value=2.1 Score=45.64 Aligned_cols=115 Identities=13% Similarity=0.146 Sum_probs=66.7
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc
Q 007112 343 GILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE 422 (617)
Q Consensus 343 gll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~ 422 (617)
|.+++..+... ...+++++|+|..|..++..+... .++ ++++++++. ..| ...+...+.+.
T Consensus 117 ~~laa~~la~~--~~~~v~iiGaG~qA~~~~~al~~~----~~i------~~v~V~~R~----~~~---a~~~a~~~~~~ 177 (326)
T TIGR02992 117 GAVAARHLARE--DSSVVAIFGAGMQARLQLEALTLV----RDI------RSARIWARD----SAK---AEALALQLSSL 177 (326)
T ss_pred HHHHHHHhCCC--CCcEEEEECCCHHHHHHHHHHHHh----CCc------cEEEEECCC----HHH---HHHHHHHHHhh
Confidence 44555544322 346999999999998888877543 243 678888774 222 22222222211
Q ss_pred ----cCCCCCHHHHHhccCCcEEEeecCCC-CCCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHHH
Q 007112 423 ----HAPIKSLLDAVKAIKPTMLMGTSGVG-KTFTKEVVEAMASFNEKPVIFALSNPT-SQSECTAEE 484 (617)
Q Consensus 423 ----~~~~~~L~eaV~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erPIIFaLSNPt-~~aEct~ed 484 (617)
.....++.++++. .|++|-+++.. .+|+.+.++. .-.|.++..-+ .+-|+.++-
T Consensus 178 ~g~~v~~~~~~~~av~~--aDiVvtaT~s~~p~i~~~~l~~------g~~i~~vg~~~p~~rEld~~~ 237 (326)
T TIGR02992 178 LGIDVTAATDPRAAMSG--ADIIVTTTPSETPILHAEWLEP------GQHVTAMGSDAEHKNEIDPAV 237 (326)
T ss_pred cCceEEEeCCHHHHhcc--CCEEEEecCCCCcEecHHHcCC------CcEEEeeCCCCCCceecCHHH
Confidence 1124689999975 99999765432 3566666542 22444444322 246777654
No 102
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=88.61 E-value=1.7 Score=42.04 Aligned_cols=115 Identities=16% Similarity=0.130 Sum_probs=73.6
Q ss_pred HHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCC
Q 007112 348 LKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIK 427 (617)
Q Consensus 348 lr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~ 427 (617)
....+..|.++++.|+|.|..|..||+++... |+ +++.+|+..-- . + .+....-...
T Consensus 27 ~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~~~~-----~---~---~~~~~~~~~~ 83 (178)
T PF02826_consen 27 ERFPGRELRGKTVGIIGYGRIGRAVARRLKAF-----GM-------RVIGYDRSPKP-----E---E---GADEFGVEYV 83 (178)
T ss_dssp TTTTBS-STTSEEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSCHH-----H---H---HHHHTTEEES
T ss_pred cCCCccccCCCEEEEEEEcCCcCeEeeeeecC-----Cc-------eeEEecccCCh-----h---h---hcccccceee
Confidence 45677889999999999999999999999743 64 68888885220 0 0 1111111235
Q ss_pred CHHHHHhccCCcEEEeecC----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc-c-ccCcEE
Q 007112 428 SLLDAVKAIKPTMLMGTSG----VGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYT-W-SKGQAI 494 (617)
Q Consensus 428 ~L~eaV~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~-w-T~Grai 494 (617)
+|.|+++. .|+++=.-. .-+.|+++.++.|. +.-++.-.|. .++--|+|+- + .+|+.-
T Consensus 84 ~l~ell~~--aDiv~~~~plt~~T~~li~~~~l~~mk---~ga~lvN~aR----G~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 84 SLDELLAQ--ADIVSLHLPLTPETRGLINAEFLAKMK---PGAVLVNVAR----GELVDEDALLDALESGKIA 147 (178)
T ss_dssp SHHHHHHH---SEEEE-SSSSTTTTTSBSHHHHHTST---TTEEEEESSS----GGGB-HHHHHHHHHTTSEE
T ss_pred ehhhhcch--hhhhhhhhccccccceeeeeeeeeccc---cceEEEeccc----hhhhhhhHHHHHHhhccCc
Confidence 89999987 888874321 24799999999996 5557766555 5555554432 1 346544
No 103
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=88.46 E-value=0.48 Score=44.95 Aligned_cols=85 Identities=19% Similarity=0.304 Sum_probs=50.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhch--hhhcc---cCC---CCCHH
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKK--PWAHE---HAP---IKSLL 430 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~--~fA~~---~~~---~~~L~ 430 (617)
||.|+|||+.|+.+|..+... | .++.|.+++.-.. +.++.... .|... .+. ..+|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-----g-------~~V~l~~~~~~~~----~~i~~~~~n~~~~~~~~l~~~i~~t~dl~ 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-----G-------HEVTLWGRDEEQI----EEINETRQNPKYLPGIKLPENIKATTDLE 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-----T-------EEEEEETSCHHHH----HHHHHHTSETTTSTTSBEETTEEEESSHH
T ss_pred CEEEECcCHHHHHHHHHHHHc-----C-------CEEEEEeccHHHH----HHHHHhCCCCCCCCCcccCcccccccCHH
Confidence 789999999999999998753 4 5677777763111 11221111 11110 111 25899
Q ss_pred HHHhccCCcEEEeecCCCCCCCHHHHHHHHcCC
Q 007112 431 DAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFN 463 (617)
Q Consensus 431 eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~ 463 (617)
+++++ +|++| +.. +-.+-+++++.++.+-
T Consensus 65 ~a~~~--ad~Ii-iav-Ps~~~~~~~~~l~~~l 93 (157)
T PF01210_consen 65 EALED--ADIII-IAV-PSQAHREVLEQLAPYL 93 (157)
T ss_dssp HHHTT---SEEE-E-S--GGGHHHHHHHHTTTS
T ss_pred HHhCc--ccEEE-ecc-cHHHHHHHHHHHhhcc
Confidence 99986 77665 333 3346789999998744
No 104
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.43 E-value=0.7 Score=47.32 Aligned_cols=123 Identities=17% Similarity=0.200 Sum_probs=71.5
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc---c-CCCCCH
Q 007112 354 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE---H-APIKSL 429 (617)
Q Consensus 354 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~---~-~~~~~L 429 (617)
.|++.+|+++|+|..|.-+|+.|+.+ |+ .+|.++|.+= |..+ +|+.+ .++.. + ....-+
T Consensus 8 ~L~~~~VlVvG~GGvGs~va~~Lar~-----GV------g~i~LvD~D~-V~~s---NlnRq--~~~~~~diG~~Kae~~ 70 (231)
T cd00755 8 KLRNAHVAVVGLGGVGSWAAEALARS-----GV------GKLTLIDFDV-VCVS---NLNRQ--IHALLSTVGKPKVEVM 70 (231)
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCCE-ECch---hhcch--hCcChhhCCCcHHHHH
Confidence 47789999999999999999999764 76 7899999982 2222 24332 23321 1 111346
Q ss_pred HHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeC
Q 007112 430 LDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASG 498 (617)
Q Consensus 430 ~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~GraifASG 498 (617)
.+-++.+.|++=|-... .-++++-+...-...-.=||-+.-|+..+... .+ +.+..+.-++.+|
T Consensus 71 ~~~l~~inP~~~V~~~~--~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L-~~--~c~~~~ip~I~s~ 134 (231)
T cd00755 71 AERIRDINPECEVDAVE--EFLTPDNSEDLLGGDPDFVVDAIDSIRAKVAL-IA--YCRKRKIPVISSM 134 (231)
T ss_pred HHHHHHHCCCcEEEEee--eecCHhHHHHHhcCCCCEEEEcCCCHHHHHHH-HH--HHHHhCCCEEEEe
Confidence 67777778877665443 24565554444322223355566676644332 12 2233455555544
No 105
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=88.16 E-value=0.63 Score=50.08 Aligned_cols=38 Identities=32% Similarity=0.500 Sum_probs=33.3
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 353 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 353 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
.+|++.||+++|+|.-|.-+|..|+.+ |+ .+|.++|.+
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~a-----Gv------g~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRA-----GV------GKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 468899999999999999999998764 76 789999996
No 106
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=87.51 E-value=1.3 Score=50.66 Aligned_cols=167 Identities=15% Similarity=0.205 Sum_probs=86.5
Q ss_pred cccccCcccccccccCCChhhHHHHHHHHHHHHHHhcCCCeeeeeecCCCCcHHHHHHHHcCCCcee--ecCccchhHHH
Q 007112 263 EQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAFELLSKYSSSHLVF--NDDIQGTASVV 340 (617)
Q Consensus 263 e~LL~DplYlG~r~~R~~g~eY~~fidefv~av~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~F--NDDiQGTaaV~ 340 (617)
+.|.++-.++|+-|+-.. .++++.+. ++ .-.+|-+|.+-.- +|- .+..+| +.-|.|-.+|.
T Consensus 80 ~~l~~g~tli~~l~p~~n----~~ll~~l~----~k--~it~ia~E~vpri------sra-q~~d~lssma~iAGy~Avi 142 (511)
T TIGR00561 80 AELPAGKALVSFIWPAQN----PELMEKLA----AK--NITVLAMDAVPRI------SRA-QKLDALSSMANIAGYRAII 142 (511)
T ss_pred HhcCCCCEEEEEcCccCC----HHHHHHHH----Hc--CCEEEEeeccccc------ccC-CccCcchhhHHHHHHHHHH
Confidence 345566677777775332 23333332 21 2345667755310 111 122222 24556666666
Q ss_pred HHHHHHHHHHhC-----CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCch-
Q 007112 341 LAGILSALKLVG-----GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH- 414 (617)
Q Consensus 341 LAgll~Alr~~g-----~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~- 414 (617)
.|+-.-.-...| ......|++|+|+|.+|+..+..+.. .|. ++..+|.+.-.. .+...+..
T Consensus 143 ~Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~-----lGA-------~V~v~d~~~~rl-e~a~~lGa~ 209 (511)
T TIGR00561 143 EAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANS-----LGA-------IVRAFDTRPEVK-EQVQSMGAE 209 (511)
T ss_pred HHHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEeCCHHHH-HHHHHcCCe
Confidence 554333222222 13456899999999999998777654 252 377777764211 00000100
Q ss_pred -----------hchhhhcccCC------CCCHHHHHhccCCcEEEeecCCCC-----CCCHHHHHHHHc
Q 007112 415 -----------FKKPWAHEHAP------IKSLLDAVKAIKPTMLMGTSGVGK-----TFTKEVVEAMAS 461 (617)
Q Consensus 415 -----------~k~~fA~~~~~------~~~L~eaV~~vkPtvLIG~S~~~g-----~Fteevv~~Ma~ 461 (617)
...-||+...+ ..-+.+.++. .|++|++.-++| +.|+++++.|..
T Consensus 210 ~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~--~DIVI~TalipG~~aP~Lit~emv~~MKp 276 (511)
T TIGR00561 210 FLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKE--VDIIITTALIPGKPAPKLITEEMVDSMKA 276 (511)
T ss_pred EEeccccccccccccceeecCHHHHHHHHHHHHHHhCC--CCEEEECcccCCCCCCeeehHHHHhhCCC
Confidence 00112221100 0114555655 999999994443 589999999973
No 107
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=87.36 E-value=1.4 Score=49.22 Aligned_cols=130 Identities=15% Similarity=0.221 Sum_probs=76.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhc-cCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc-cCC-----CCCHH
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQ-TKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAP-----IKSLL 430 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~-~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~-~~~-----~~~L~ 430 (617)
.||+|+||||+ -.-.|+..+.+. ..++ -..|+|+|-+ .+|-+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~----~~ei~L~DId----~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~ 69 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFP----LRELVLYDID----AERQEKVAEAVKILFKENYPEIKFVYTTDPE 69 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCC----CCEEEEECCC----HHHHHHHHHHHHHHHHhhCCCeEEEEECCHH
Confidence 38999999996 554555555432 2342 3789999986 33322122222222222 112 25788
Q ss_pred HHHhccCCcEEEeec--------------------------CCCCCC--------CHHHHHHHHcCCCCcEEEecCCCCC
Q 007112 431 DAVKAIKPTMLMGTS--------------------------GVGKTF--------TKEVVEAMASFNEKPVIFALSNPTS 476 (617)
Q Consensus 431 eaV~~vkPtvLIG~S--------------------------~~~g~F--------teevv~~Ma~~~erPIIFaLSNPt~ 476 (617)
||++. +|.+|=.- |.||.| -.++++.|.+.|+.-+++-.|||.
T Consensus 70 eAl~g--ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~- 146 (437)
T cd05298 70 EAFTD--ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPA- 146 (437)
T ss_pred HHhCC--CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcH-
Confidence 88887 77665332 333332 258888999999999999999998
Q ss_pred CCCCCHHHHhccccCcEEEeeCCCCC
Q 007112 477 QSECTAEEAYTWSKGQAIFASGSPFD 502 (617)
Q Consensus 477 ~aEct~edA~~wT~GraifASGSPF~ 502 (617)
..+|-.---.++.-|+|=-+-+|+.
T Consensus 147 -~~vt~~~~~~~~~~kviGlC~~~~~ 171 (437)
T cd05298 147 -AIVAEALRRLFPNARILNICDMPIA 171 (437)
T ss_pred -HHHHHHHHHHCCCCCEEEECCcHHH
Confidence 4444322112344566555555544
No 108
>PRK14851 hypothetical protein; Provisional
Probab=87.33 E-value=2.4 Score=49.98 Aligned_cols=138 Identities=15% Similarity=0.108 Sum_probs=87.8
Q ss_pred HHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEc
Q 007112 320 SKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVD 399 (617)
Q Consensus 320 ~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD 399 (617)
++|..++-.|..+.| ++|++.||+|+|+|..|.-+|+.|+.+ |+ ++|.++|
T Consensus 24 ~ry~R~~~l~g~e~Q------------------~kL~~~~VlIvG~GGlGs~va~~Lar~-----GV------G~l~LvD 74 (679)
T PRK14851 24 AAFSRNIGLFTPGEQ------------------ERLAEAKVAIPGMGGVGGVHLITMVRT-----GI------GRFHIAD 74 (679)
T ss_pred HHhhhhHHhcCHHHH------------------HHHhcCeEEEECcCHHHHHHHHHHHHh-----CC------CeEEEEc
Confidence 677666666654332 567899999999999999999998875 76 7899999
Q ss_pred cCCcccCCcc-------cCCchhchhhhcc-----c---------CCC--CCHHHHHhccCCcEEEeecCCCCCCCHHHH
Q 007112 400 SKGLIVSSRK-------ESLQHFKKPWAHE-----H---------API--KSLLDAVKAIKPTMLMGTSGVGKTFTKEVV 456 (617)
Q Consensus 400 ~~GLi~~~R~-------~~L~~~k~~fA~~-----~---------~~~--~~L~eaV~~vkPtvLIG~S~~~g~Fteevv 456 (617)
-+=+-.++-. +++-..|..-+.. . ..+ .++.+.+++ .|++|-...-...-++..|
T Consensus 75 ~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~--~DvVid~~D~~~~~~r~~l 152 (679)
T PRK14851 75 FDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAGINADNMDAFLDG--VDVVLDGLDFFQFEIRRTL 152 (679)
T ss_pred CCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEecCCChHHHHHHHhC--CCEEEECCCCCcHHHHHHH
Confidence 8733221110 0111122222211 0 111 246677775 8998855432111134567
Q ss_pred HHHHcCCCCcEEEecC----------CCCCCCCCCHHHHhccccC
Q 007112 457 EAMASFNEKPVIFALS----------NPTSQSECTAEEAYTWSKG 491 (617)
Q Consensus 457 ~~Ma~~~erPIIFaLS----------NPt~~aEct~edA~~wT~G 491 (617)
...|..+..|+|++-. +|. ....++.|.+.++
T Consensus 153 ~~~c~~~~iP~i~~g~~G~~g~~~~~~p~---~~~~~~~~~~~~~ 194 (679)
T PRK14851 153 FNMAREKGIPVITAGPLGYSSAMLVFTPQ---GMGFDDYFNIGGK 194 (679)
T ss_pred HHHHHHCCCCEEEeecccccceEEEEcCC---CCCHhHhccCCCC
Confidence 7778888999998754 676 5788888888777
No 109
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=87.16 E-value=1.2 Score=44.39 Aligned_cols=109 Identities=17% Similarity=0.269 Sum_probs=69.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc-cCC-----CCCHHHH
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAP-----IKSLLDA 432 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~-~~~-----~~~L~ea 432 (617)
||+|+||||+-. ..++...+.+...++ .+.|+|+|.+ ..|-+.....-+.+++. ..+ ..++.||
T Consensus 1 KI~iIGaGS~~~--~~~l~~~l~~~~~l~----~~ei~L~Did----~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eA 70 (183)
T PF02056_consen 1 KITIIGAGSTYF--PLLLLGDLLRTEELS----GSEIVLMDID----EERLEIVERLARRMVEEAGADLKVEATTDRREA 70 (183)
T ss_dssp EEEEETTTSCCH--HHHHHHHHHCTTTST----EEEEEEE-SC----HHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHH
T ss_pred CEEEECCchHhh--HHHHHHHHhcCccCC----CcEEEEEcCC----HHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 799999999964 445555555444553 4689999987 34422122333334332 122 2589999
Q ss_pred HhccCCcEEEeecCCC----------------------------CCCC--------HHHHHHHHcCCCCcEEEecCCCCC
Q 007112 433 VKAIKPTMLMGTSGVG----------------------------KTFT--------KEVVEAMASFNEKPVIFALSNPTS 476 (617)
Q Consensus 433 V~~vkPtvLIG~S~~~----------------------------g~Ft--------eevv~~Ma~~~erPIIFaLSNPt~ 476 (617)
++. +|.+|=.-.+| |.|. .|+.+.|.+.|+.--||=.+||.
T Consensus 71 l~g--ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~- 147 (183)
T PF02056_consen 71 LEG--ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPM- 147 (183)
T ss_dssp HTT--ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSH-
T ss_pred hCC--CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChH-
Confidence 997 88887444333 2222 48899999999999999999998
Q ss_pred CCCCC
Q 007112 477 QSECT 481 (617)
Q Consensus 477 ~aEct 481 (617)
+++|
T Consensus 148 -~~vt 151 (183)
T PF02056_consen 148 -GIVT 151 (183)
T ss_dssp -HHHH
T ss_pred -HHHH
Confidence 5554
No 110
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.92 E-value=3.9 Score=43.79 Aligned_cols=134 Identities=16% Similarity=0.201 Sum_probs=78.7
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcc--cCCcccCCchhchhhhcccCCCCCHHHHHhc
Q 007112 359 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI--VSSRKESLQHFKKPWAHEHAPIKSLLDAVKA 435 (617)
Q Consensus 359 riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi--~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~ 435 (617)
||+|.|| |..|..+|..|+.. |+--.+....+.++|.+.-. .++..-++.+..-++..+.....++.++++.
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~-----~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~ 78 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKG-----DVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKD 78 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhC-----cccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCC
Confidence 6999999 99999999987642 43100011379999985411 1111001222111221111113578888987
Q ss_pred cCCcEEEeecCCCCC--CC------------HHHHHHHHcCC-CCcEEEecCCCCCCCCCCHHHHhccccC--cEEEeeC
Q 007112 436 IKPTMLMGTSGVGKT--FT------------KEVVEAMASFN-EKPVIFALSNPTSQSECTAEEAYTWSKG--QAIFASG 498 (617)
Q Consensus 436 vkPtvLIG~S~~~g~--Ft------------eevv~~Ma~~~-erPIIFaLSNPt~~aEct~edA~~wT~G--raifASG 498 (617)
+|++|=+.+.+.. .| +++++.|.+++ ..-||+-.|||. ....--+++++.| +-.|.||
T Consensus 79 --aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~~~~~~~~~ig~g 153 (325)
T cd01336 79 --VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPA---NTNALILLKYAPSIPKENFTAL 153 (325)
T ss_pred --CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcH---HHHHHHHHHHcCCCCHHHEEee
Confidence 9999877666422 23 56778888885 689999999997 3444455555422 1126666
Q ss_pred CCCC
Q 007112 499 SPFD 502 (617)
Q Consensus 499 SPF~ 502 (617)
.=.+
T Consensus 154 t~LD 157 (325)
T cd01336 154 TRLD 157 (325)
T ss_pred ehHH
Confidence 5444
No 111
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.63 E-value=2.3 Score=45.19 Aligned_cols=88 Identities=16% Similarity=0.250 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCch
Q 007112 336 TASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 414 (617)
Q Consensus 336 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~ 414 (617)
-.-+|-+|++.=++-.|.+++.+++|++|.+. .|.-+|.||...-. ..| ..+..++++
T Consensus 136 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~-~~~-------AtVt~~hs~------------- 194 (286)
T PRK14184 136 FRPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGK-FAN-------ATVTVCHSR------------- 194 (286)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcc-cCC-------CEEEEEeCC-------------
Confidence 35677889999999999999999999999764 57777777753100 012 245566543
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007112 415 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 457 (617)
Q Consensus 415 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 457 (617)
..+|.+.++. +|++|+..+.++.+++++|+
T Consensus 195 -----------t~~l~~~~~~--ADIVI~AvG~p~li~~~~vk 224 (286)
T PRK14184 195 -----------TPDLAEECRE--ADFLFVAIGRPRFVTADMVK 224 (286)
T ss_pred -----------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1358899988 99999999999999999983
No 112
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=86.61 E-value=1.5 Score=46.39 Aligned_cols=124 Identities=19% Similarity=0.263 Sum_probs=73.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhccc---CCCCCHHHHHh
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH---APIKSLLDAVK 434 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~---~~~~~L~eaV~ 434 (617)
.||.|+|+|..|.++|-.++.. |+ + ++.++|..--+.+++.-++.+ ...+.... ....++.+ ++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~-----g~----~--~VvlvDi~~~l~~g~a~d~~~-~~~~~~~~~~i~~t~d~~~-~~ 68 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK-----EL----A--DLVLLDVVEGIPQGKALDMYE-ASPVGGFDTKVTGTNNYAD-TA 68 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc-----CC----C--eEEEEeCCCChhHHHHHhhhh-hhhccCCCcEEEecCCHHH-hC
Confidence 3799999999999999987642 54 2 499999832222211000110 00110000 11246766 55
Q ss_pred ccCCcEEEeecCCC---C-C------CC----HHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccc--CcEEEeeC
Q 007112 435 AIKPTMLMGTSGVG---K-T------FT----KEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSK--GQAIFASG 498 (617)
Q Consensus 435 ~vkPtvLIG~S~~~---g-~------Ft----eevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~--GraifASG 498 (617)
. .|++|=+.+.+ | . ++ +++++.|.+++...+|+-.|||. .....-++++++ -+=+|++|
T Consensus 69 ~--aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~---di~t~~~~~~sg~~~~rviG~g 143 (305)
T TIGR01763 69 N--SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPL---DAMTYVAWQKSGFPKERVIGQA 143 (305)
T ss_pred C--CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHEEEec
Confidence 5 78887555533 1 1 22 45666788899999999999998 445555566542 12377777
Q ss_pred C
Q 007112 499 S 499 (617)
Q Consensus 499 S 499 (617)
.
T Consensus 144 ~ 144 (305)
T TIGR01763 144 G 144 (305)
T ss_pred c
Confidence 4
No 113
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=86.51 E-value=5.4 Score=42.95 Aligned_cols=110 Identities=23% Similarity=0.211 Sum_probs=74.6
Q ss_pred CceeecCc---cchhHHHHHHHHHHHH------------------HhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhcc
Q 007112 326 HLVFNDDI---QGTASVVLAGILSALK------------------LVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQT 384 (617)
Q Consensus 326 ~~~FNDDi---QGTaaV~LAgll~Alr------------------~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~ 384 (617)
+.|+|-.- +..|=-+++.+|+..| ..|..|.++++-|+|.|..|..+|+.+...
T Consensus 90 i~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~af----- 164 (324)
T COG0111 90 ILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAF----- 164 (324)
T ss_pred CEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhC-----
Confidence 44455443 3344557788888877 567789999999999999999999998654
Q ss_pred CCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeec----CCCCCCCHHHHHHHH
Q 007112 385 KAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTS----GVGKTFTKEVVEAMA 460 (617)
Q Consensus 385 G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S----~~~g~Fteevv~~Ma 460 (617)
|+ ++..+|+. ..+. ... ........+|.+.++. .|+|.-.- ..-|.++++-+..|.
T Consensus 165 gm-------~v~~~d~~----~~~~--~~~-----~~~~~~~~~Ld~lL~~--sDiv~lh~PlT~eT~g~i~~~~~a~MK 224 (324)
T COG0111 165 GM-------KVIGYDPY----SPRE--RAG-----VDGVVGVDSLDELLAE--ADILTLHLPLTPETRGLINAEELAKMK 224 (324)
T ss_pred CC-------eEEEECCC----Cchh--hhc-----cccceecccHHHHHhh--CCEEEEcCCCCcchhcccCHHHHhhCC
Confidence 65 57788873 1111 000 0112334679999987 89887542 223789999999994
No 114
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.46 E-value=3 Score=44.32 Aligned_cols=85 Identities=18% Similarity=0.223 Sum_probs=68.1
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCc
Q 007112 335 GTASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 413 (617)
Q Consensus 335 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~ 413 (617)
+-.-+|-+|++.=++-.+.+++++++|++|-+ ..|.-+|.||.. .|. .+.+|+++
T Consensus 135 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~-----~~A-------tVti~hs~------------ 190 (281)
T PRK14183 135 GFVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLN-----ANA-------TVDICHIF------------ 190 (281)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC------------
Confidence 34567888889999999999999999999999 889999988853 242 34555443
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007112 414 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 457 (617)
Q Consensus 414 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 457 (617)
.++|.+.+++ +|++|-..|.++.|+.++|+
T Consensus 191 ------------T~~l~~~~~~--ADIvV~AvGkp~~i~~~~vk 220 (281)
T PRK14183 191 ------------TKDLKAHTKK--ADIVIVGVGKPNLITEDMVK 220 (281)
T ss_pred ------------CcCHHHHHhh--CCEEEEecCcccccCHHHcC
Confidence 1246788887 99999999999999999996
No 115
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=86.27 E-value=3.4 Score=41.21 Aligned_cols=96 Identities=14% Similarity=0.135 Sum_probs=59.7
Q ss_pred eEEEeC-cChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhh---cc-c----CCCCCH
Q 007112 359 TFLFLG-AGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWA---HE-H----APIKSL 429 (617)
Q Consensus 359 riv~~G-AGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA---~~-~----~~~~~L 429 (617)
||.|+| +|..|..+|..+.+. | .+++++|++ .++ +......+. .. . -...+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-----G-------~~V~v~~r~----~~~---~~~l~~~~~~~~~~~g~~~~~~~~~~ 62 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-----G-------NKIIIGSRD----LEK---AEEAAAKALEELGHGGSDIKVTGADN 62 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-----C-------CEEEEEEcC----HHH---HHHHHHHHHhhccccCCCceEEEeCh
Confidence 699997 899999999998652 4 467777763 111 222111111 00 0 011366
Q ss_pred HHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCC
Q 007112 430 LDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQ 477 (617)
Q Consensus 430 ~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~ 477 (617)
.|+++. +|++| ++..+ ...+++++.++..-...+|+.++||...
T Consensus 63 ~ea~~~--aDvVi-lavp~-~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 63 AEAAKR--ADVVI-LAVPW-DHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred HHHHhc--CCEEE-EECCH-HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 788875 78776 44433 3457888888654344799999999854
No 116
>PRK08374 homoserine dehydrogenase; Provisional
Probab=86.27 E-value=3.4 Score=44.43 Aligned_cols=106 Identities=18% Similarity=0.235 Sum_probs=64.3
Q ss_pred ceEEEeCcChHHHHHHHHHHH---HHHhccCCCHHhhcCeEEEEccCCcccCCcccCC---chhchhhhccc------C-
Q 007112 358 QTFLFLGAGEAGTGIAELIAL---EMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESL---QHFKKPWAHEH------A- 424 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~---~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L---~~~k~~fA~~~------~- 424 (617)
-+|.++|.|..|.+++++|.+ .+.++.|+.. +=+-+.|++|-+...+.-++ ..+++.+.... .
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l----~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~ 78 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVEL----KVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEV 78 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCE----EEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccc
Confidence 589999999999999999976 3333345321 22446799998876553112 12222222100 0
Q ss_pred CCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEe
Q 007112 425 PIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFA 470 (617)
Q Consensus 425 ~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 470 (617)
..-++.|.++...+||+|-+++.. ..-+-+.+.+. +.+++|.+
T Consensus 79 ~~~~~~ell~~~~~DVvVd~t~~~-~a~~~~~~al~--~G~~VVta 121 (336)
T PRK08374 79 YNFSPEEIVEEIDADIVVDVTNDK-NAHEWHLEALK--EGKSVVTS 121 (336)
T ss_pred cCCCHHHHHhcCCCCEEEECCCcH-HHHHHHHHHHh--hCCcEEEC
Confidence 012788988878899999998643 33333334444 56788864
No 117
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.25 E-value=3 Score=44.33 Aligned_cols=84 Identities=21% Similarity=0.301 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCch
Q 007112 336 TASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 414 (617)
Q Consensus 336 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~ 414 (617)
-.-+|-.|++.-++-.|.++++++++++|.+. .|.-+|.||.. .| ..+.+|+++
T Consensus 137 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~-----~~-------atVt~chs~------------- 191 (284)
T PRK14190 137 FLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLN-----EN-------ATVTYCHSK------------- 191 (284)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEEeCC-------------
Confidence 45678888999999999999999999999764 67778877753 24 346666542
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007112 415 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 457 (617)
Q Consensus 415 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 457 (617)
..+|.+.+++ +|++|...+.++.|+.++|+
T Consensus 192 -----------t~~l~~~~~~--ADIvI~AvG~p~~i~~~~ik 221 (284)
T PRK14190 192 -----------TKNLAELTKQ--ADILIVAVGKPKLITADMVK 221 (284)
T ss_pred -----------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1368889987 99999999999999999985
No 118
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=86.04 E-value=22 Score=39.83 Aligned_cols=188 Identities=22% Similarity=0.220 Sum_probs=124.7
Q ss_pred cCCChhhHHHHHHHHHHHHHHhcCCCeeeeeecCCCCcH-H-HHHHHHcCC-----Ccee----------ecCccchhHH
Q 007112 277 KRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNA-F-ELLSKYSSS-----HLVF----------NDDIQGTASV 339 (617)
Q Consensus 277 ~R~~g~eY~~fidefv~av~~~fGp~~lIqfEDf~~~~A-f-~lL~ryr~~-----~~~F----------NDDiQGTaaV 339 (617)
|..+-.|-.+|...|++++.+.-||+.-|-=+|++..-. . -+.+.|+.- .++| .+----||-=
T Consensus 110 k~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~G 189 (411)
T COG0334 110 KGLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYG 189 (411)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCccccee
Confidence 346778889999999999999999999999999986321 1 255666531 2222 1222234432
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhh
Q 007112 340 VLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPW 419 (617)
Q Consensus 340 ~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~f 419 (617)
+.-+.-.|++..|.+|++.||.|-|-|.+|.=.|+.+.+. |. |=+-+=|++|-|++.. .|+..+...
T Consensus 190 v~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~-----GA------kvva~sds~g~i~~~~--Gld~~~l~~ 256 (411)
T COG0334 190 VFYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHEL-----GA------KVVAVSDSKGGIYDED--GLDVEALLE 256 (411)
T ss_pred hHHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHc-----CC------EEEEEEcCCCceecCC--CCCHHHHHH
Confidence 3333348888889899999999999999999888888642 53 5566778999888763 455333321
Q ss_pred hcc----------cCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHhc
Q 007112 420 AHE----------HAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN-PTSQSECTAEEAYT 487 (617)
Q Consensus 420 A~~----------~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt~~aEct~edA~~ 487 (617)
.++ .+.+.+ |.+-.+..||||=+.. ++..|++-.+.+.+. +|.=-+| ||+ -.+++.+.
T Consensus 257 ~~~~~~~v~~~~ga~~i~~--~e~~~~~cDIl~PcA~-~n~I~~~na~~l~ak----~V~EgAN~P~t---~eA~~i~~ 325 (411)
T COG0334 257 LKERRGSVAEYAGAEYITN--EELLEVDCDILIPCAL-ENVITEDNADQLKAK----IVVEGANGPTT---PEADEILL 325 (411)
T ss_pred HhhhhhhHHhhcCceEccc--cccccccCcEEccccc-ccccchhhHHHhhhc----EEEeccCCCCC---HHHHHHHH
Confidence 111 111222 3444567899996666 568999988888532 8888888 763 33444444
No 119
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.97 E-value=2.1 Score=42.74 Aligned_cols=118 Identities=10% Similarity=0.134 Sum_probs=68.5
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhc
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKA 435 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~ 435 (617)
++.||.|+|+|..|..+|..+... |.. -.++++.+++. + .+.+...+.+|- .....++.+++++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~-----~~~---~~~~i~~~~~~-----~-~~~~~~~~~~~~--~~~~~~~~~~~~~ 66 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKT-----SKE---YIEEIIVSNRS-----N-VEKLDQLQARYN--VSTTTDWKQHVTS 66 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-----CCC---CcCeEEEECCC-----C-HHHHHHHHHHcC--cEEeCChHHHHhc
Confidence 457899999999999999888642 310 11346656542 0 111333333231 1123568888875
Q ss_pred cCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccc-CcEEEeeC
Q 007112 436 IKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSK-GQAIFASG 498 (617)
Q Consensus 436 vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~-GraifASG 498 (617)
.|++| ++..+. .-+++++.++.+-...+|+.++.-.+ .++.-+|.+ +..++-+|
T Consensus 67 --~DiVi-iavp~~-~~~~v~~~l~~~~~~~~vis~~~gi~-----~~~l~~~~~~~~~v~r~~ 121 (245)
T PRK07634 67 --VDTIV-LAMPPS-AHEELLAELSPLLSNQLVVTVAAGIG-----PSYLEERLPKGTPVAWIM 121 (245)
T ss_pred --CCEEE-EecCHH-HHHHHHHHHHhhccCCEEEEECCCCC-----HHHHHHHcCCCCeEEEEC
Confidence 78776 455443 45899999886544457777776653 334444433 33455555
No 120
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.93 E-value=4.4 Score=43.39 Aligned_cols=102 Identities=24% Similarity=0.303 Sum_probs=68.3
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccC--CCCCHHHHHhc
Q 007112 359 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHA--PIKSLLDAVKA 435 (617)
Q Consensus 359 riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~--~~~~L~eaV~~ 435 (617)
||.|+|| |..|..+|-.|+. .|+ -..+.|+|.+ + .++-.-+|.+.. .+.+-.. ..+++.+.++.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~-----~~~-----~~elvLiDi~-~-a~g~alDL~~~~-~~~~i~~~~~~~~~y~~~~d 68 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKL-----NPL-----VSELALYDIV-N-TPGVAADLSHIN-TPAKVTGYLGPEELKKALKG 68 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEEecC-c-cceeehHhHhCC-CcceEEEecCCCchHHhcCC
Confidence 8999999 9999999987743 365 3679999998 3 232221254433 1111111 11346677887
Q ss_pred cCCcEEEeecCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007112 436 IKPTMLMGTSGVG---KT-----------FTKEVVEAMASFNEKPVIFALSNPT 475 (617)
Q Consensus 436 vkPtvLIG~S~~~---g~-----------Fteevv~~Ma~~~erPIIFaLSNPt 475 (617)
.|++|=+.|.+ |- .-+++++.+.++++..+|+-.|||.
T Consensus 69 --aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv 120 (310)
T cd01337 69 --ADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120 (310)
T ss_pred --CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 89888666664 21 1246777888899999999999998
No 121
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=85.92 E-value=4.8 Score=43.21 Aligned_cols=136 Identities=15% Similarity=0.173 Sum_probs=81.1
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcc--cCCcccCCchhchhhhcccCCCCCHHHHHhc
Q 007112 359 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI--VSSRKESLQHFKKPWAHEHAPIKSLLDAVKA 435 (617)
Q Consensus 359 riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi--~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~ 435 (617)
||.|+|| |..|..+|..|+.. |+-..+..-.+.|+|.+.-. .++..-+|.+...++........+..+.+++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~-----~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~ 75 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG-----RMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTD 75 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc-----cccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCC
Confidence 6899999 99999999887642 44100000168999974221 1111112444332332111111255677877
Q ss_pred cCCcEEEeecCCCCC--CC------------HHHHHHHHcC-CCCcEEEecCCCCCCCCCCHHHHhccccC--cEEEeeC
Q 007112 436 IKPTMLMGTSGVGKT--FT------------KEVVEAMASF-NEKPVIFALSNPTSQSECTAEEAYTWSKG--QAIFASG 498 (617)
Q Consensus 436 vkPtvLIG~S~~~g~--Ft------------eevv~~Ma~~-~erPIIFaLSNPt~~aEct~edA~~wT~G--raifASG 498 (617)
.|++|=+.+.+.- -| +++++.|+++ ++.-||+-.|||. .+..--+++++.+ +-+|.||
T Consensus 76 --aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~~~sg~~~~~vig~g 150 (324)
T TIGR01758 76 --VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPA---NTNALVLSNYAPSIPPKNFSAL 150 (324)
T ss_pred --CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHcCCCCcceEEEe
Confidence 8888866665421 11 4677888889 4999999999997 4445555666532 2278888
Q ss_pred CCCCcc
Q 007112 499 SPFDPV 504 (617)
Q Consensus 499 SPF~pv 504 (617)
.=.+..
T Consensus 151 t~LDs~ 156 (324)
T TIGR01758 151 TRLDHN 156 (324)
T ss_pred eehHHH
Confidence 755543
No 122
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.89 E-value=3.1 Score=44.20 Aligned_cols=83 Identities=23% Similarity=0.344 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCch
Q 007112 336 TASVVLAGILSALKLVGGTLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 414 (617)
Q Consensus 336 TaaV~LAgll~Alr~~g~~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~ 414 (617)
-.-+|-+|++.=++-.|.++++++++|+|. |..|.-+|.+|... |. .+.++.++
T Consensus 137 ~~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~-----ga-------tVtv~~s~------------- 191 (284)
T PRK14179 137 MIPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDK-----NA-------TVTLTHSR------------- 191 (284)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHC-----CC-------EEEEECCC-------------
Confidence 356777888888999999999999999999 99999999999753 53 34444221
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHH
Q 007112 415 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVV 456 (617)
Q Consensus 415 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv 456 (617)
..+|.+.+++ .|++|-..+.++.++++++
T Consensus 192 -----------t~~l~~~~~~--ADIVI~avg~~~~v~~~~i 220 (284)
T PRK14179 192 -----------TRNLAEVARK--ADILVVAIGRGHFVTKEFV 220 (284)
T ss_pred -----------CCCHHHHHhh--CCEEEEecCccccCCHHHc
Confidence 1268899988 9999999999999998874
No 123
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=85.81 E-value=1.8 Score=45.35 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=36.6
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 342 AGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 342 Agll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
.|++.+++..|.+. +.++|++|||-|+.+|+-.|.+ .|. ++|+++++.
T Consensus 108 ~Gf~~~L~~~~~~~-~~~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 155 (272)
T PRK12550 108 IAIAKLLASYQVPP-DLVVALRGSGGMAKAVAAALRD-----AGF------TDGTIVARN 155 (272)
T ss_pred HHHHHHHHhcCCCC-CCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 45677777666653 4699999999999988877754 365 679999985
No 124
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=85.71 E-value=2.7 Score=43.94 Aligned_cols=99 Identities=13% Similarity=0.180 Sum_probs=63.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhcc-C
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAI-K 437 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~v-k 437 (617)
+|-|+|.|..|..+|..+... | .++.++|++ ..+ .+..+.. ......++.|.++.. +
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-----g-------~~V~~~dr~----~~~---~~~l~~~---g~~~~~s~~~~~~~~~~ 59 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-----G-------HDCVGYDHD----QDA---VKAMKED---RTTGVANLRELSQRLSA 59 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-----C-------CEEEEEECC----HHH---HHHHHHc---CCcccCCHHHHHhhcCC
Confidence 689999999999999988652 5 356667763 111 2222111 112235676766543 5
Q ss_pred CcEEEeecCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCCCCCCCHH
Q 007112 438 PTMLMGTSGVGKTFTKEVVEAMASF-NEKPVIFALSNPTSQSECTAE 483 (617)
Q Consensus 438 PtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPt~~aEct~e 483 (617)
||++|= +-..+ ..+++++.++.+ .+..||+-+||.. ++-+-+
T Consensus 60 ~dvIi~-~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~--~~~t~~ 102 (298)
T TIGR00872 60 PRVVWV-MVPHG-IVDAVLEELAPTLEKGDIVIDGGNSY--YKDSLR 102 (298)
T ss_pred CCEEEE-EcCch-HHHHHHHHHHhhCCCCCEEEECCCCC--cccHHH
Confidence 888874 44444 889999888764 4568999999865 444444
No 125
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=85.13 E-value=0.95 Score=45.51 Aligned_cols=104 Identities=18% Similarity=0.299 Sum_probs=59.0
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhccc--CCCCCHH
Q 007112 353 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH--APIKSLL 430 (617)
Q Consensus 353 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~--~~~~~L~ 430 (617)
.+|++.+|+++|+|..|..||+.|+.. |+ .+|.++|.+ .|..+ +|+.+- .|..+. .....+.
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D-~ve~s---NL~Rq~-~~~~dvG~~Ka~~a~ 87 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARS-----GV------GNLKLVDFD-VVEPS---NLNRQQ-YFISQIGMPKVEALK 87 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC-Eeccc---cccccE-eehhhCCChHHHHHH
Confidence 357889999999999999999999764 76 789999997 22222 244331 121110 0012345
Q ss_pred HHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEE-ecCCCCC
Q 007112 431 DAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIF-ALSNPTS 476 (617)
Q Consensus 431 eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF-aLSNPt~ 476 (617)
+-++.+.|++-|=.-. .-++++-+...-+ +--+|+ +.=|++.
T Consensus 88 ~~l~~lnp~v~v~~~~--~~i~~~~~~~~~~--~~DvVI~a~D~~~~ 130 (212)
T PRK08644 88 ENLLEINPFVEIEAHN--EKIDEDNIEELFK--DCDIVVEAFDNAET 130 (212)
T ss_pred HHHHHHCCCCEEEEEe--eecCHHHHHHHHc--CCCEEEECCCCHHH
Confidence 5555666765543222 2355544433321 233555 5555553
No 126
>PLN02306 hydroxypyruvate reductase
Probab=85.07 E-value=7.3 Score=42.97 Aligned_cols=196 Identities=19% Similarity=0.211 Sum_probs=109.1
Q ss_pred cCCCceeecCc---cchhHHHHHHHHHHHHHh---------------------CCCCCCceEEEeCcChHHHHHHHHHHH
Q 007112 323 SSSHLVFNDDI---QGTASVVLAGILSALKLV---------------------GGTLADQTFLFLGAGEAGTGIAELIAL 378 (617)
Q Consensus 323 r~~~~~FNDDi---QGTaaV~LAgll~Alr~~---------------------g~~l~d~riv~~GAGsAg~GIA~li~~ 378 (617)
+..+.+.|--- ..+|=-+++-+|+..|-. |..|.++++.|+|.|..|..+|+++..
T Consensus 107 ~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~ 186 (386)
T PLN02306 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (386)
T ss_pred HCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHh
Confidence 34677777421 234445667777765531 346889999999999999999999864
Q ss_pred HHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhc--------c--cCCCCCHHHHHhccCCcEEEee----
Q 007112 379 EMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH--------E--HAPIKSLLDAVKAIKPTMLMGT---- 444 (617)
Q Consensus 379 ~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~--------~--~~~~~~L~eaV~~vkPtvLIG~---- 444 (617)
+| |+ +++.+|+..- . .+..+...+.. + .....+|.|+++. .|+++-.
T Consensus 187 ~f----Gm-------~V~~~d~~~~---~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~--sDiV~lh~Plt 247 (386)
T PLN02306 187 GF----KM-------NLIYYDLYQS---T---RLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE--ADVISLHPVLD 247 (386)
T ss_pred cC----CC-------EEEEECCCCc---h---hhhhhhhhhcccccccccccccccccCCHHHHHhh--CCEEEEeCCCC
Confidence 43 54 5888887521 0 01111011100 0 0113589999987 8998873
Q ss_pred cCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc--ccCcEEEeeCC-CC--CcceeCCeeeccCCCCcc
Q 007112 445 SGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTW--SKGQAIFASGS-PF--DPVEYNGKVFVPGQGNNA 519 (617)
Q Consensus 445 S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~w--T~GraifASGS-PF--~pv~~~Gk~~~p~Q~NN~ 519 (617)
...-|.|+++.++.|. +.-++.=.| +.++-=|+|+.- ..|+. .+.|- =| +|. .+. .-=+..|+
T Consensus 248 ~~T~~lin~~~l~~MK---~ga~lIN~a----RG~lVDe~AL~~AL~sg~i-~gAaLDVf~~EP~-~~~---~L~~~pNV 315 (386)
T PLN02306 248 KTTYHLINKERLALMK---KEAVLVNAS----RGPVIDEVALVEHLKANPM-FRVGLDVFEDEPY-MKP---GLADMKNA 315 (386)
T ss_pred hhhhhhcCHHHHHhCC---CCeEEEECC----CccccCHHHHHHHHHhCCe-eEEEEeCCCCCCC-Ccc---hHhhCCCE
Confidence 2334799999999995 455666555 455555554422 24553 33331 01 111 011 01245688
Q ss_pred cccchhhHHHHHhCCcccCHHHHHHHHHHHHhccC
Q 007112 520 YIFPGLGLGLIISGAIRVRDEMLLAASEALAAQVT 554 (617)
Q Consensus 520 yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~ 554 (617)
.+-|=+|-...- -...|...+++-+.....
T Consensus 316 ilTPHiag~T~e-----~~~~~~~~~~~ni~~~~~ 345 (386)
T PLN02306 316 VVVPHIASASKW-----TREGMATLAALNVLGKLK 345 (386)
T ss_pred EECCccccCcHH-----HHHHHHHHHHHHHHHHHc
Confidence 888887632111 123444445555554443
No 127
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.06 E-value=3.3 Score=44.21 Aligned_cols=87 Identities=17% Similarity=0.276 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchh
Q 007112 337 ASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 415 (617)
Q Consensus 337 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~ 415 (617)
.-+|-.|++.=++..+.+++++++|++|.+. .|.-+|.||.+.+.+ .| ..+..+.++
T Consensus 139 ~PcTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~-~~-------atVt~~hs~-------------- 196 (295)
T PRK14174 139 VSCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKE-SN-------CTVTICHSA-------------- 196 (295)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhcccc-CC-------CEEEEEeCC--------------
Confidence 4566778888889999999999999999865 688888887643211 12 235555432
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007112 416 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 457 (617)
Q Consensus 416 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 457 (617)
..+|.+.+++ .|++|+..+.++.|++++|+
T Consensus 197 ----------t~~l~~~~~~--ADIvI~Avg~~~li~~~~vk 226 (295)
T PRK14174 197 ----------TKDIPSYTRQ--ADILIAAIGKARFITADMVK 226 (295)
T ss_pred ----------chhHHHHHHh--CCEEEEecCccCccCHHHcC
Confidence 1358889987 99999999999999999994
No 128
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.01 E-value=3.6 Score=41.70 Aligned_cols=120 Identities=11% Similarity=0.141 Sum_probs=70.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccC
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIK 437 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vk 437 (617)
.||.|+|+|..|..+|..+... |. ...+++++|++. +..+..+..| ...-..+..++++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-----g~----~~~~v~v~~r~~-------~~~~~~~~~~--g~~~~~~~~~~~~~-- 62 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLAS-----GV----PAKDIIVSDPSP-------EKRAALAEEY--GVRAATDNQEAAQE-- 62 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhC-----CC----CcceEEEEcCCH-------HHHHHHHHhc--CCeecCChHHHHhc--
Confidence 4799999999999999888643 43 124678887641 1122222222 11123567777764
Q ss_pred CcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCCCCcce
Q 007112 438 PTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSPFDPVE 505 (617)
Q Consensus 438 PtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~GraifASGSPF~pv~ 505 (617)
+|++| ++..+ ...+++++.+..+. ..+|..++|-++ .++.-+|....+=++..-|..|..
T Consensus 63 advVi-l~v~~-~~~~~v~~~l~~~~-~~~vvs~~~gi~-----~~~l~~~~~~~~~iv~~~P~~p~~ 122 (267)
T PRK11880 63 ADVVV-LAVKP-QVMEEVLSELKGQL-DKLVVSIAAGVT-----LARLERLLGADLPVVRAMPNTPAL 122 (267)
T ss_pred CCEEE-EEcCH-HHHHHHHHHHHhhc-CCEEEEecCCCC-----HHHHHHhcCCCCcEEEecCCchHH
Confidence 77776 44433 45788888887654 458899999773 344445543222233345555543
No 129
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=84.78 E-value=0.36 Score=46.31 Aligned_cols=89 Identities=20% Similarity=0.358 Sum_probs=49.3
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC-------------CcccCCcccCCchhchhhhc
Q 007112 355 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK-------------GLIVSSRKESLQHFKKPWAH 421 (617)
Q Consensus 355 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~-------------GLi~~~R~~~L~~~k~~fA~ 421 (617)
+.-.+|||.|+|.+|.|.++++... |. ++...|.. ++.+ ...+.+.. +.|++
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~l-----Ga-------~v~~~d~~~~~~~~~~~~~~~~i~~-~~~~~~~~--~~~~~ 82 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGL-----GA-------EVVVPDERPERLRQLESLGAYFIEV-DYEDHLER--KDFDK 82 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSHHHHHHHHHTTTEESEE-TTTTTTTS--B-CCH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHC-----CC-------EEEeccCCHHHHHhhhcccCceEEE-cccccccc--cccch
Confidence 4568999999999999999988653 53 24444442 0101 00000000 00222
Q ss_pred c----cCC--CCCHHHHHhccCCcEEEeec-----CCCCCCCHHHHHHHH
Q 007112 422 E----HAP--IKSLLDAVKAIKPTMLMGTS-----GVGKTFTKEVVEAMA 460 (617)
Q Consensus 422 ~----~~~--~~~L~eaV~~vkPtvLIG~S-----~~~g~Fteevv~~Ma 460 (617)
. ++. ...|.+.++. .|++|+.. ..|-+||++.++.|.
T Consensus 83 ~~~~~~~~~~~~~f~~~i~~--~d~vI~~~~~~~~~~P~lvt~~~~~~m~ 130 (168)
T PF01262_consen 83 ADYYEHPESYESNFAEFIAP--ADIVIGNGLYWGKRAPRLVTEEMVKSMK 130 (168)
T ss_dssp HHCHHHCCHHHHHHHHHHHH---SEEEEHHHBTTSS---SBEHHHHHTSS
T ss_pred hhhhHHHHHhHHHHHHHHhh--CcEEeeecccCCCCCCEEEEhHHhhccC
Confidence 1 111 1368888886 79999743 445689999999996
No 130
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.64 E-value=3.6 Score=44.90 Aligned_cols=112 Identities=21% Similarity=0.243 Sum_probs=61.2
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCC--CCC-HH
Q 007112 354 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAP--IKS-LL 430 (617)
Q Consensus 354 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~--~~~-L~ 430 (617)
.+++.+++|+|+|.+|.++|+.++.. | .+++++|++.- +.+......+...... ..+ -.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~-----G-------~~V~~~d~~~~------~~~~~~~~~l~~~~~~~~~~~~~~ 63 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKL-----G-------AKVILTDEKEE------DQLKEALEELGELGIELVLGEYPE 63 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEeCCch------HHHHHHHHHHHhcCCEEEeCCcch
Confidence 46789999999999999999888753 6 46899988630 0111111111000000 001 11
Q ss_pred HHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCC
Q 007112 431 DAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGS 499 (617)
Q Consensus 431 eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~GraifASGS 499 (617)
+.+. ++|++|-.++.. .-.+++..+= + ..-||+ +..|+.... ...+.|..|||
T Consensus 64 ~~~~--~~d~vv~~~g~~-~~~~~~~~a~-~-~~i~~~-------~~~~~~~~~----~~~~vI~ITGS 116 (450)
T PRK14106 64 EFLE--GVDLVVVSPGVP-LDSPPVVQAH-K-KGIEVI-------GEVELAYRF----SKAPIVAITGT 116 (450)
T ss_pred hHhh--cCCEEEECCCCC-CCCHHHHHHH-H-CCCcEE-------eHHHHHHhh----cCCCEEEEeCC
Confidence 2233 489888766653 4455555442 2 345665 223332222 23688999998
No 131
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.64 E-value=3.9 Score=43.50 Aligned_cols=83 Identities=18% Similarity=0.279 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchh
Q 007112 337 ASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 415 (617)
Q Consensus 337 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~ 415 (617)
.-+|-.|++.=++-.+.+++++++|++|.+. .|.-+|.||.. .| ..+.+|+++
T Consensus 139 ~PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------atVt~chs~-------------- 192 (284)
T PRK14177 139 LPCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTE-----MN-------ATVTLCHSK-------------- 192 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC--------------
Confidence 3456677788888899999999999999764 67778877753 24 246667653
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007112 416 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 457 (617)
Q Consensus 416 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 457 (617)
.++|.+.+++ +|++|-..|.++.++.|+|+
T Consensus 193 ----------T~~l~~~~~~--ADIvIsAvGk~~~i~~~~ik 222 (284)
T PRK14177 193 ----------TQNLPSIVRQ--ADIIVGAVGKPEFIKADWIS 222 (284)
T ss_pred ----------CCCHHHHHhh--CCEEEEeCCCcCccCHHHcC
Confidence 1357788887 99999999999999999996
No 132
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=84.55 E-value=4 Score=39.88 Aligned_cols=84 Identities=17% Similarity=0.279 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCch
Q 007112 336 TASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 414 (617)
Q Consensus 336 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~ 414 (617)
---+|-.|++.-++..+.++++.+++++|.+. .|.-+|.||... |. .+.+++++
T Consensus 15 ~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~-----~a-------tVt~~h~~------------- 69 (160)
T PF02882_consen 15 FVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNK-----GA-------TVTICHSK------------- 69 (160)
T ss_dssp S--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHT-----T--------EEEEE-TT-------------
T ss_pred CcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhC-----CC-------eEEeccCC-------------
Confidence 34567888899999999999999999999985 888888887542 32 24555553
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007112 415 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 457 (617)
Q Consensus 415 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 457 (617)
.++|.+.++. +|++|-..++++.++.++|+
T Consensus 70 -----------T~~l~~~~~~--ADIVVsa~G~~~~i~~~~ik 99 (160)
T PF02882_consen 70 -----------TKNLQEITRR--ADIVVSAVGKPNLIKADWIK 99 (160)
T ss_dssp -----------SSSHHHHHTT--SSEEEE-SSSTT-B-GGGS-
T ss_pred -----------CCcccceeee--ccEEeeeecccccccccccc
Confidence 1357777876 99999999999999999885
No 133
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=84.13 E-value=6.2 Score=42.24 Aligned_cols=127 Identities=24% Similarity=0.335 Sum_probs=78.5
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhccc--CCCCCHHHHHhc
Q 007112 359 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH--APIKSLLDAVKA 435 (617)
Q Consensus 359 riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~--~~~~~L~eaV~~ 435 (617)
||.|+|| |..|..+|-+|+. .|+ -..+.|+|.+. ..+-.-+|.+... ..+-. ....++.++++.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~--a~g~a~DL~~~~~-~~~i~~~~~~~~~~~~~~d 67 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-----QPY-----VSELSLYDIAG--AAGVAADLSHIPT-AASVKGFSGEEGLENALKG 67 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEecCCC--CcEEEchhhcCCc-CceEEEecCCCchHHHcCC
Confidence 6899999 9999999988754 254 26799999876 2222112544321 01111 011246788887
Q ss_pred cCCcEEEeecCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCC-CCCCCHHHHhccc---cCcEEEee
Q 007112 436 IKPTMLMGTSGVGKT--------------FTKEVVEAMASFNEKPVIFALSNPTS-QSECTAEEAYTWS---KGQAIFAS 497 (617)
Q Consensus 436 vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt~-~aEct~edA~~wT---~GraifAS 497 (617)
.|++|=+.+.+.. .=+++.+.+.+++..-||+-.|||.. ++.+...-+++++ ..| +|++
T Consensus 68 --aDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~r-ViG~ 144 (312)
T TIGR01772 68 --ADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNK-LFGV 144 (312)
T ss_pred --CCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHH-EEee
Confidence 8988866665422 11467777888999999999999983 2233444555543 223 6666
Q ss_pred CCCCC
Q 007112 498 GSPFD 502 (617)
Q Consensus 498 GSPF~ 502 (617)
|. .+
T Consensus 145 g~-LD 148 (312)
T TIGR01772 145 TT-LD 148 (312)
T ss_pred ec-ch
Confidence 64 44
No 134
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.87 E-value=3.9 Score=43.71 Aligned_cols=81 Identities=17% Similarity=0.293 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeC-cChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchh
Q 007112 337 ASVVLAGILSALKLVGGTLADQTFLFLG-AGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 415 (617)
Q Consensus 337 aaV~LAgll~Alr~~g~~l~d~riv~~G-AGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~ 415 (617)
.-+|-.|++.=++-.+.++++++++|+| .|..|..+|.+|... |. .+.+++++ ..
T Consensus 138 ~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~-----g~-------tVtv~~~r-------T~----- 193 (296)
T PRK14188 138 VPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAA-----NA-------TVTIAHSR-------TR----- 193 (296)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhC-----CC-------EEEEECCC-------CC-----
Confidence 4667788888889999999999999999 999999999999742 53 46666432 11
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHH
Q 007112 416 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEV 455 (617)
Q Consensus 416 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteev 455 (617)
+|.|+++. .|++|-+-+.++.+++++
T Consensus 194 ------------~l~e~~~~--ADIVIsavg~~~~v~~~~ 219 (296)
T PRK14188 194 ------------DLPAVCRR--ADILVAAVGRPEMVKGDW 219 (296)
T ss_pred ------------CHHHHHhc--CCEEEEecCChhhcchhe
Confidence 37888886 899998888887777766
No 135
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=83.84 E-value=1.3 Score=44.63 Aligned_cols=104 Identities=22% Similarity=0.264 Sum_probs=62.3
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhc-c-c-CCCCCH
Q 007112 353 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH-E-H-APIKSL 429 (617)
Q Consensus 353 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~-~-~-~~~~~L 429 (617)
.+|++.||+++|+|..|.-||+.|+.+ |+ ++|.++|.+ .|..+ +|..+- -|.. + + .....+
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~-----Gv------g~i~lvD~D-~ve~s---NL~Rq~-l~~~~diG~~Ka~~~ 80 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAA-----GV------GKLGLVDDD-VVELS---NLQRQI-LHTEADVGQPKAEAA 80 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC-EEcCc---cccccc-ccChhhCCChHHHHH
Confidence 368889999999999999999999764 76 789999998 23322 354321 1211 1 1 112357
Q ss_pred HHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007112 430 LDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPT 475 (617)
Q Consensus 430 ~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 475 (617)
.+.++.+.|++=|=... .-++++-+...-+. -.=||-++-||.
T Consensus 81 ~~~l~~~np~~~i~~~~--~~i~~~~~~~~~~~-~DvVi~~~d~~~ 123 (228)
T cd00757 81 AERLRAINPDVEIEAYN--ERLDAENAEELIAG-YDLVLDCTDNFA 123 (228)
T ss_pred HHHHHHhCCCCEEEEec--ceeCHHHHHHHHhC-CCEEEEcCCCHH
Confidence 77788888876443222 23455444433221 122444666765
No 136
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.78 E-value=6.2 Score=43.67 Aligned_cols=116 Identities=18% Similarity=0.224 Sum_probs=63.4
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhccc---CCCCCHHH
Q 007112 355 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH---APIKSLLD 431 (617)
Q Consensus 355 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~---~~~~~L~e 431 (617)
+..+||+|+|.|-.|.++|++|.. .|. .+.++|.+-- ....+.-..+.... .......+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~-----~G~-------~V~~~D~~~~------~~~~~~~~~l~~~gi~~~~~~~~~~ 73 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVK-----LGA-------KVTAFDKKSE------EELGEVSNELKELGVKLVLGENYLD 73 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHH-----CCC-------EEEEECCCCC------ccchHHHHHHHhCCCEEEeCCCChH
Confidence 456799999999999999998864 363 5778886420 00111000111100 00111234
Q ss_pred HHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCeee
Q 007112 432 AVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGKVF 511 (617)
Q Consensus 432 aV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~GraifASGSPF~pv~~~Gk~~ 511 (617)
-++ ++|.+|=.++.+ .-.+++.++.. ..-||+ +.+| -++++.+.+.|-.||| ||||-
T Consensus 74 ~~~--~~dlVV~Spgi~-~~~p~~~~a~~--~~i~i~-------s~~e----~~~~~~~~~vIaITGT-------nGKTT 130 (458)
T PRK01710 74 KLD--GFDVIFKTPSMR-IDSPELVKAKE--EGAYIT-------SEME----EFIKYCPAKVFGVTGS-------DGKTT 130 (458)
T ss_pred Hhc--cCCEEEECCCCC-CCchHHHHHHH--cCCcEE-------echH----HhhhhcCCCEEEEECC-------CCHHH
Confidence 343 478766444443 23455555543 446775 2232 3445445678999998 77654
No 137
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.74 E-value=4.6 Score=42.84 Aligned_cols=83 Identities=19% Similarity=0.306 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchh
Q 007112 337 ASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 415 (617)
Q Consensus 337 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~ 415 (617)
.-+|-+|++.=++-.+.++++++++++|-+. .|.-+|.||.. .|. .+.+|+|+
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~A-------tVt~chs~-------------- 191 (278)
T PRK14172 138 LPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLN-----ENA-------TVTICHSK-------------- 191 (278)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 5678888899999999999999999999764 68888888753 242 46666653
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007112 416 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 457 (617)
Q Consensus 416 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 457 (617)
..+|.+.+++ +|++|-..|.++.|++|+|+
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (278)
T PRK14172 192 ----------TKNLKEVCKK--ADILVVAIGRPKFIDEEYVK 221 (278)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357788887 99999999999999999996
No 138
>PRK13243 glyoxylate reductase; Reviewed
Probab=83.68 E-value=13 Score=39.89 Aligned_cols=139 Identities=15% Similarity=0.155 Sum_probs=82.7
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHH
Q 007112 352 GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLD 431 (617)
Q Consensus 352 g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e 431 (617)
|..|.+++|.|+|.|..|..+|+.+... |+ +++.+|+.. + . .. ...+ .-...+|.|
T Consensus 145 g~~L~gktvgIiG~G~IG~~vA~~l~~~-----G~-------~V~~~d~~~-----~-~-~~--~~~~---~~~~~~l~e 200 (333)
T PRK13243 145 GYDVYGKTIGIIGFGRIGQAVARRAKGF-----GM-------RILYYSRTR-----K-P-EA--EKEL---GAEYRPLEE 200 (333)
T ss_pred ccCCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCCC-----C-h-hh--HHHc---CCEecCHHH
Confidence 4568999999999999999999998643 64 577888742 1 1 11 0111 112347999
Q ss_pred HHhccCCcEEEeecC----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHh-cc-ccCcEEEeeCCCC--Cc
Q 007112 432 AVKAIKPTMLMGTSG----VGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAY-TW-SKGQAIFASGSPF--DP 503 (617)
Q Consensus 432 aV~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~-~w-T~GraifASGSPF--~p 503 (617)
+++. .|+++=.-- .-+.|+++.+..|. +..++.=.|. .++--|+|+ ++ .+|+.-.|.=-=| +|
T Consensus 201 ll~~--aDiV~l~lP~t~~T~~~i~~~~~~~mk---~ga~lIN~aR----g~~vd~~aL~~aL~~g~i~gAaLDV~~~EP 271 (333)
T PRK13243 201 LLRE--SDFVSLHVPLTKETYHMINEERLKLMK---PTAILVNTAR----GKVVDTKALVKALKEGWIAGAGLDVFEEEP 271 (333)
T ss_pred HHhh--CCEEEEeCCCChHHhhccCHHHHhcCC---CCeEEEECcC----chhcCHHHHHHHHHcCCeEEEEeccCCCCC
Confidence 9987 898874422 13688999999985 5667776665 333333332 21 4566544321111 11
Q ss_pred ceeCCeeeccCCCCcccccchhhH
Q 007112 504 VEYNGKVFVPGQGNNAYIFPGLGL 527 (617)
Q Consensus 504 v~~~Gk~~~p~Q~NN~yiFPGigl 527 (617)
.. + ..+ =+..|+.+-|=+|-
T Consensus 272 ~~-~-~pL--~~~~nvilTPHia~ 291 (333)
T PRK13243 272 YY-N-EEL--FSLKNVVLAPHIGS 291 (333)
T ss_pred CC-C-chh--hcCCCEEECCcCCc
Confidence 11 1 111 13468888888873
No 139
>PRK08291 ectoine utilization protein EutC; Validated
Probab=83.36 E-value=4.7 Score=42.97 Aligned_cols=116 Identities=16% Similarity=0.205 Sum_probs=66.3
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhc
Q 007112 342 AGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH 421 (617)
Q Consensus 342 Agll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~ 421 (617)
+|.+++..+.. -..++++++|+|..|..++..+... .++ +++.++|+. .++ ...+...+.+
T Consensus 119 ~~~~a~~~la~--~~~~~v~IiGaG~~a~~~~~al~~~----~~~------~~V~v~~R~----~~~---a~~l~~~~~~ 179 (330)
T PRK08291 119 AGAVAARHLAR--EDASRAAVIGAGEQARLQLEALTLV----RPI------REVRVWARD----AAK---AEAYAADLRA 179 (330)
T ss_pred HHHHHHHHhCC--CCCCEEEEECCCHHHHHHHHHHHhc----CCC------CEEEEEcCC----HHH---HHHHHHHHhh
Confidence 35555555442 2347999999999988877766542 243 678888764 222 2333333321
Q ss_pred c----cCCCCCHHHHHhccCCcEEEeecCC-CCCCCHHHHHHHHcCCCCcEEEec-CCCCCCCCCCHHH
Q 007112 422 E----HAPIKSLLDAVKAIKPTMLMGTSGV-GKTFTKEVVEAMASFNEKPVIFAL-SNPTSQSECTAEE 484 (617)
Q Consensus 422 ~----~~~~~~L~eaV~~vkPtvLIG~S~~-~g~Fteevv~~Ma~~~erPIIFaL-SNPt~~aEct~ed 484 (617)
. .....++.++++. .|++|-++.. ..+|+.+.++. .--|.++ |+--.+-|+.++-
T Consensus 180 ~~g~~v~~~~d~~~al~~--aDiVi~aT~s~~p~i~~~~l~~------g~~v~~vg~d~~~~rEld~~~ 240 (330)
T PRK08291 180 ELGIPVTVARDVHEAVAG--ADIIVTTTPSEEPILKAEWLHP------GLHVTAMGSDAEHKNEIAPAV 240 (330)
T ss_pred ccCceEEEeCCHHHHHcc--CCEEEEeeCCCCcEecHHHcCC------CceEEeeCCCCCCcccCCHHH
Confidence 1 1124688999986 8999866443 34566666542 1123333 4433456888765
No 140
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=83.24 E-value=2.6 Score=44.06 Aligned_cols=118 Identities=19% Similarity=0.385 Sum_probs=70.7
Q ss_pred EEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCccc----CCchhchhhhccc---CCCCCHHHH
Q 007112 360 FLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKE----SLQHFKKPWAHEH---APIKSLLDA 432 (617)
Q Consensus 360 iv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~----~L~~~k~~fA~~~---~~~~~L~ea 432 (617)
|.|+|||..|.++|..++. .|+ + .++|+|.+ .++.. ++.+.. .+.... ....+. ++
T Consensus 1 I~IIGaG~vG~~ia~~la~-----~~l----~--eV~L~Di~----e~~~~g~~~dl~~~~-~~~~~~~~I~~t~d~-~~ 63 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-----KEL----G--DVVLLDIV----EGLPQGKALDISQAA-PILGSDTKVTGTNDY-ED 63 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----CCC----c--EEEEEeCC----CcHHHHHHHHHHHhh-hhcCCCeEEEEcCCH-HH
Confidence 5789999999999987764 255 2 69999986 22211 011110 010000 012355 45
Q ss_pred HhccCCcEEEeecCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCc---EEE
Q 007112 433 VKAIKPTMLMGTSGVGKT--------------FTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQ---AIF 495 (617)
Q Consensus 433 V~~vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~Gr---aif 495 (617)
++. .|++|=+.+.+.. .-+++++.|.+++...+|+-.|||. ......+++++ |. -+|
T Consensus 64 l~d--ADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~---di~t~~~~~~s-~~~~~rvi 137 (300)
T cd01339 64 IAG--SDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPL---DVMTYVAYKAS-GFPRNRVI 137 (300)
T ss_pred hCC--CCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHh-CCCHHHEE
Confidence 665 8888844433321 2347888899999999999999998 33344455554 32 377
Q ss_pred eeCCC
Q 007112 496 ASGSP 500 (617)
Q Consensus 496 ASGSP 500 (617)
++|.-
T Consensus 138 Glgt~ 142 (300)
T cd01339 138 GMAGV 142 (300)
T ss_pred Eecch
Confidence 77743
No 141
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=83.01 E-value=1.4 Score=45.17 Aligned_cols=104 Identities=17% Similarity=0.269 Sum_probs=61.7
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc--c-CCCCCH
Q 007112 353 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE--H-APIKSL 429 (617)
Q Consensus 353 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~--~-~~~~~L 429 (617)
.+|++.||+++|+|..|.-+|+.|+.+ |+ ++|.++|.+= |.. .+|+.+ .-|... + .....+
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~-----Gv------g~i~lvD~D~-ve~---sNL~RQ-~l~~~~diG~~Ka~~a 83 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAA-----GV------GNLTLLDFDT-VSL---SNLQRQ-VLHSDANIGQPKVESA 83 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCc-ccc---cCcccc-eeeeHhhCCCcHHHHH
Confidence 467889999999999999999999764 76 7899999982 222 135432 111111 1 111346
Q ss_pred HHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEE-ecCCCCC
Q 007112 430 LDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIF-ALSNPTS 476 (617)
Q Consensus 430 ~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF-aLSNPt~ 476 (617)
.+.++.+.|++-|-.-. .-++++-+...-+ +--+|+ +.-||.+
T Consensus 84 ~~~l~~inp~v~i~~~~--~~i~~~~~~~~~~--~~DlVvd~~D~~~~ 127 (240)
T TIGR02355 84 KDALTQINPHIAINPIN--AKLDDAELAALIA--EHDIVVDCTDNVEV 127 (240)
T ss_pred HHHHHHHCCCcEEEEEe--ccCCHHHHHHHhh--cCCEEEEcCCCHHH
Confidence 67777777777665433 2455543333211 223444 5666653
No 142
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.56 E-value=7.2 Score=41.86 Aligned_cols=111 Identities=14% Similarity=0.087 Sum_probs=67.6
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcc--cCCcccCCchhchhhhcccCCCCCHHHHHh
Q 007112 358 QTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI--VSSRKESLQHFKKPWAHEHAPIKSLLDAVK 434 (617)
Q Consensus 358 ~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi--~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~ 434 (617)
.||.|+|| |..|..+|-.|+. .|+-.-.-...+.|+|.+.=. .++..-+|.+...++.....-..+..+.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 77 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIAS-----GEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFK 77 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----ccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhC
Confidence 38999999 9999998887754 244100001379999985322 112111244433233221111135567787
Q ss_pred ccCCcEEEeecCCCCC--CC------------HHHHHHHHcCC-CCcEEEecCCCC
Q 007112 435 AIKPTMLMGTSGVGKT--FT------------KEVVEAMASFN-EKPVIFALSNPT 475 (617)
Q Consensus 435 ~vkPtvLIG~S~~~g~--Ft------------eevv~~Ma~~~-erPIIFaLSNPt 475 (617)
+ .|++|=+.+.+.. .| +++...+.+++ +.-||+-.|||-
T Consensus 78 d--aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 131 (322)
T cd01338 78 D--ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC 131 (322)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH
Confidence 7 8999866665321 23 46777788889 499999999997
No 143
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=82.50 E-value=12 Score=42.48 Aligned_cols=36 Identities=22% Similarity=0.024 Sum_probs=29.2
Q ss_pred ccCCCCcccccchhhHHHHHhCCcccCHHHHHHHHH
Q 007112 512 VPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASE 547 (617)
Q Consensus 512 ~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~ 547 (617)
.||..+|-..+|.+.-+..+...--++.+.+.++.+
T Consensus 186 ~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~ 221 (503)
T TIGR02279 186 TPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALR 221 (503)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 578899999999998888888877778777776654
No 144
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=82.46 E-value=2.7 Score=43.53 Aligned_cols=98 Identities=14% Similarity=0.185 Sum_probs=57.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhc--hhhhc------ccCCCCCHH
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFK--KPWAH------EHAPIKSLL 430 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k--~~fA~------~~~~~~~L~ 430 (617)
||.|+|+|..|..+|..+... | ..++++|+..-.. +.+.... ..+.. ......++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-----g-------~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-----G-------HDVTLWARDPEQA----AEINADRENPRYLPGIKLPDNLRATTDLA 66 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEECCHHHH----HHHHHcCcccccCCCCcCCCCeEEeCCHH
Confidence 799999999999999998653 4 3577788752111 0011000 00000 001124677
Q ss_pred HHHhccCCcEEEeecCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCC
Q 007112 431 DAVKAIKPTMLMGTSGVGKTFTKEVVEAMASF-NEKPVIFALSNPTS 476 (617)
Q Consensus 431 eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPt~ 476 (617)
++++. +|++| ++... ...+++++.+..+ .+.-+|..++|-..
T Consensus 67 ~~~~~--~D~vi-~~v~~-~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 67 EALAD--ADLIL-VAVPS-QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred HHHhC--CCEEE-EeCCH-HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 77765 77776 33323 3678888887754 34568888887543
No 145
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=81.93 E-value=5.7 Score=42.63 Aligned_cols=85 Identities=13% Similarity=0.203 Sum_probs=67.2
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCc
Q 007112 335 GTASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 413 (617)
Q Consensus 335 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~ 413 (617)
+-.-+|-+|++.=++-.|.+++.+++|++|-+. .|.-+|.||.. .| ..+.+|+++
T Consensus 145 ~~~PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~-----~~-------ATVtvchs~------------ 200 (299)
T PLN02516 145 LFLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLK-----AD-------ATVTVVHSR------------ 200 (299)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC------------
Confidence 345677788888899999999999999999764 57777777743 24 347777653
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007112 414 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 457 (617)
Q Consensus 414 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 457 (617)
.++|.+.+++ +|++|-..|.++.|+.|+|+
T Consensus 201 ------------T~nl~~~~~~--ADIvv~AvGk~~~i~~~~vk 230 (299)
T PLN02516 201 ------------TPDPESIVRE--ADIVIAAAGQAMMIKGDWIK 230 (299)
T ss_pred ------------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 2357888887 99999999999999999997
No 146
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.93 E-value=8.5 Score=39.87 Aligned_cols=32 Identities=34% Similarity=0.519 Sum_probs=26.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+||.|+|+|..|.+||..++.. | .+++++|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-----G-------~~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-----G-------YDVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 6899999999999999988653 5 368888874
No 147
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.90 E-value=4.3 Score=43.68 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=25.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcc
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDS 400 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~ 400 (617)
.||.|+|||..|.|||..++.+ |. ++.++|.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a-----G~-------~V~l~D~ 38 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH-----GL-------DVVAWDP 38 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeC
Confidence 5899999999999999998753 64 4666765
No 148
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.81 E-value=5.9 Score=42.26 Aligned_cols=86 Identities=17% Similarity=0.292 Sum_probs=68.2
Q ss_pred cchhHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCC
Q 007112 334 QGTASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESL 412 (617)
Q Consensus 334 QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L 412 (617)
.+-.-+|-+|++.=++..+.+++++++|++|.+. .|.-+|.||.. .|. .+.+|+|+
T Consensus 136 ~~~~PcTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~A-------TVtichs~----------- 192 (288)
T PRK14171 136 QGFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLK-----ENC-------SVTICHSK----------- 192 (288)
T ss_pred CCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-----------
Confidence 3446778888999999999999999999999764 68888887753 242 35566653
Q ss_pred chhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007112 413 QHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 457 (617)
Q Consensus 413 ~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 457 (617)
..+|.+.+++ +|++|-..|.++.+++++|+
T Consensus 193 -------------T~~L~~~~~~--ADIvV~AvGkp~~i~~~~vk 222 (288)
T PRK14171 193 -------------THNLSSITSK--ADIVVAAIGSPLKLTAEYFN 222 (288)
T ss_pred -------------CCCHHHHHhh--CCEEEEccCCCCccCHHHcC
Confidence 1357888887 99999999999999999996
No 149
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=81.62 E-value=7.8 Score=41.67 Aligned_cols=122 Identities=16% Similarity=0.118 Sum_probs=72.8
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcc--cCCcccCCchhchhhhcccCCCCCHHHHHh
Q 007112 358 QTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI--VSSRKESLQHFKKPWAHEHAPIKSLLDAVK 434 (617)
Q Consensus 358 ~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi--~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~ 434 (617)
-||.|+|| |..|..+|-.|+. .|+-.-+-...|.|+|.+.-. .++..-+|.+..-++-+...-..+..+.++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 78 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIAS-----GELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFK 78 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----CCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhC
Confidence 37999998 9999999988764 254100011279999986311 111111244333223221111135667787
Q ss_pred ccCCcEEEeecCCCCC--CC------------HHHHHHHHcCCC-CcEEEecCCCCCCCCCCHHHHhccc
Q 007112 435 AIKPTMLMGTSGVGKT--FT------------KEVVEAMASFNE-KPVIFALSNPTSQSECTAEEAYTWS 489 (617)
Q Consensus 435 ~vkPtvLIG~S~~~g~--Ft------------eevv~~Ma~~~e-rPIIFaLSNPt~~aEct~edA~~wT 489 (617)
+ .|++|=+.|.+.. .| +++++.+++++. .-||+--|||- ....--+++++
T Consensus 79 d--aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~k~s 143 (323)
T TIGR01759 79 D--VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA---NTNALIASKNA 143 (323)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHc
Confidence 7 8998866665411 23 467778888987 99999999997 34444455554
No 150
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=81.42 E-value=4.7 Score=42.41 Aligned_cols=108 Identities=19% Similarity=0.219 Sum_probs=67.5
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhccc---CCCCCH
Q 007112 353 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH---APIKSL 429 (617)
Q Consensus 353 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~---~~~~~L 429 (617)
..|++.+|+++|+|..|.-+|+.|+.+ |+ ++|.++|.+=+-.. +++. |..+-.+. ....-+
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~-----GV------g~itLiD~D~V~~s----NlnR-Q~~~~~~~vG~~Kve~~ 89 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALART-----GI------GAITLIDMDDVCVT----NTNR-QIHALRDNVGLAKAEVM 89 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCEeccc----cccc-ccccChhhcChHHHHHH
Confidence 357889999999999999999999864 76 78999998844332 2442 21111110 111356
Q ss_pred HHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCC
Q 007112 430 LDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQS 478 (617)
Q Consensus 430 ~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~a 478 (617)
.+.+..+.|++-|-.- ...++++-+...-...-.=||-+.-|+..+.
T Consensus 90 ~~rl~~INP~~~V~~i--~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~ 136 (268)
T PRK15116 90 AERIRQINPECRVTVV--DDFITPDNVAEYMSAGFSYVIDAIDSVRPKA 136 (268)
T ss_pred HHHHHhHCCCcEEEEE--ecccChhhHHHHhcCCCCEEEEcCCCHHHHH
Confidence 7778888888866443 2345665554443222334667777776443
No 151
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=81.38 E-value=3.8 Score=42.07 Aligned_cols=100 Identities=12% Similarity=0.113 Sum_probs=56.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCC-cccCCchh---chhhhcccCCCCCHHHHHh
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSS-RKESLQHF---KKPWAHEHAPIKSLLDAVK 434 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~-R~~~L~~~---k~~fA~~~~~~~~L~eaV~ 434 (617)
||.|+|+|+.|..+|..+... | .+++++++ +--.+. +...+.-. ..... ......++.++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-----g-------~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~ 67 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-----G-------RDVTFLVR-PKRAKALRERGLVIRSDHGDAVV-PGPVITDPEELTG 67 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-----C-------CceEEEec-HHHHHHHHhCCeEEEeCCCeEEe-cceeecCHHHccC
Confidence 799999999999999988653 4 45778877 210000 00001000 00000 0011245556554
Q ss_pred ccCCcEEEeecCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCC
Q 007112 435 AIKPTMLMGTSGVGKTFTKEVVEAMASF-NEKPVIFALSNPTS 476 (617)
Q Consensus 435 ~vkPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPt~ 476 (617)
. +|++|=+.-. ...+++++.++.+ .+..+|+.+.|.-.
T Consensus 68 ~--~d~vilavk~--~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 68 P--FDLVILAVKA--YQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred C--CCEEEEEecc--cCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 3 6766533322 3579999988763 45567888999863
No 152
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=81.35 E-value=2.9 Score=44.04 Aligned_cols=32 Identities=31% Similarity=0.346 Sum_probs=25.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
-||.|+|+|+.|.++|..+... | .++.++|+.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~-----G-------~~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK-----G-------VPVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 3799999999999999998753 4 347777763
No 153
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=81.27 E-value=1.1 Score=49.03 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=33.5
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 353 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 353 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
++|++.||+++|+|..|.-+|..|+.+ |+ ++|.++|.+
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~-----Gv------g~i~lvD~D 75 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAA-----GV------GTLGIVEFD 75 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 567889999999999999999999864 76 789999987
No 154
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=81.18 E-value=6.8 Score=39.30 Aligned_cols=148 Identities=16% Similarity=0.167 Sum_probs=79.1
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHh-hcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHH
Q 007112 355 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEE-ARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAV 433 (617)
Q Consensus 355 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~ee-Ar~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV 433 (617)
.+++||.|+|.|..+. +|.-++..|.. ++..+- +..-+.+.|..-+++.-- +-..+-.-|++. |.-..
T Consensus 39 ~~~~rI~~~G~GgSa~-~A~~~a~~l~~--~~~~~r~gl~a~~l~~d~~~~ta~a--nd~~~~~~f~~q------l~~~~ 107 (196)
T PRK10886 39 LNGNKILCCGNGTSAA-NAQHFAASMIN--RFETERPSLPAIALNTDNVVLTAIA--NDRLHDEVYAKQ------VRALG 107 (196)
T ss_pred HcCCEEEEEECcHHHH-HHHHHHHHHhc--cccccCCCcceEEecCcHHHHHHHh--ccccHHHHHHHH------HHHcC
Confidence 4579999999998775 78887776642 110000 112232333333332211 122344455543 32222
Q ss_pred hccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCeeecc
Q 007112 434 KAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGKVFVP 513 (617)
Q Consensus 434 ~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~GraifASGSPF~pv~~~Gk~~~p 513 (617)
-+-|++|+.|..|. |+++++++. -|.+ .+-+.|..||.|-.|+. -..
T Consensus 108 --~~gDvli~iS~SG~--s~~v~~a~~-----------------------~Ak~-~G~~vI~IT~~~~s~l~-----~l~ 154 (196)
T PRK10886 108 --HAGDVLLAISTRGN--SRDIVKAVE-----------------------AAVT-RDMTIVALTGYDGGELA-----GLL 154 (196)
T ss_pred --CCCCEEEEEeCCCC--CHHHHHHHH-----------------------HHHH-CCCEEEEEeCCCCChhh-----hcc
Confidence 35799999999887 899999874 2222 23345555664433331 112
Q ss_pred CCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHHHhccC
Q 007112 514 GQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQVT 554 (617)
Q Consensus 514 ~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~ 554 (617)
+.++=....|.-- ..+-.++-+..-+.|.+++.
T Consensus 155 ~~~D~~i~ip~~~--------~~~v~e~h~~i~H~l~~~v~ 187 (196)
T PRK10886 155 GPQDVEIRIPSHR--------SARIQEMHMLTVNCLCDLID 187 (196)
T ss_pred ccCCEEEEcCCCc--------hHHHHHHHHHHHHHHHHHHH
Confidence 2344455555321 23445667777777777773
No 155
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=81.17 E-value=1.4 Score=43.66 Aligned_cols=74 Identities=19% Similarity=0.316 Sum_probs=49.3
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc-cCC-----C
Q 007112 353 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAP-----I 426 (617)
Q Consensus 353 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~-~~~-----~ 426 (617)
++|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+= +..+ +|+.+ .|.+. .+. .
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~-----GV------g~i~lvD~d~-ve~s---nl~rq--~~~~~~~~~iG~~Ka 77 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLA-----GI------DSITIVDHRL-VSTE---DLGSN--FFLDAEVSNSGMNRA 77 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEECCc-CChh---cCccc--EecccchhhcCchHH
Confidence 457889999999999999999999875 76 7899999983 2222 24321 12111 011 1
Q ss_pred CCHHHHHhccCCcEEEe
Q 007112 427 KSLLDAVKAIKPTMLMG 443 (617)
Q Consensus 427 ~~L~eaV~~vkPtvLIG 443 (617)
..+.+.++.+.|++=|=
T Consensus 78 ~~~~~~L~~lNp~v~i~ 94 (198)
T cd01485 78 AASYEFLQELNPNVKLS 94 (198)
T ss_pred HHHHHHHHHHCCCCEEE
Confidence 24667777778887553
No 156
>PRK06436 glycerate dehydrogenase; Provisional
Probab=80.97 E-value=23 Score=37.75 Aligned_cols=109 Identities=14% Similarity=0.167 Sum_probs=72.8
Q ss_pred chhHHHHHHHHHHHHHh----------------CCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEE
Q 007112 335 GTASVVLAGILSALKLV----------------GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLV 398 (617)
Q Consensus 335 GTaaV~LAgll~Alr~~----------------g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lv 398 (617)
..|=-+++-+|+..|-. +..|.++++.|+|-|..|..+|+++. ++ |+ +++.+
T Consensus 84 ~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~~~~~L~gktvgIiG~G~IG~~vA~~l~-af----G~-------~V~~~ 151 (303)
T PRK06436 84 SVAEHAFALLLAWAKNICENNYNMKNGNFKQSPTKLLYNKSLGILGYGGIGRRVALLAK-AF----GM-------NIYAY 151 (303)
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHHcCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHHH-HC----CC-------EEEEE
Confidence 34445666666665522 45799999999999999999998664 32 64 58888
Q ss_pred ccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeecC----CCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007112 399 DSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSG----VGKTFTKEVVEAMASFNEKPVIFALSNP 474 (617)
Q Consensus 399 D~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLSNP 474 (617)
|+... .+.. . ....+|.|+++. .|+++=.-. .-++|+++.++.|. +..++.=.|.-
T Consensus 152 ~r~~~-----~~~~--------~--~~~~~l~ell~~--aDiv~~~lp~t~~T~~li~~~~l~~mk---~ga~lIN~sRG 211 (303)
T PRK06436 152 TRSYV-----NDGI--------S--SIYMEPEDIMKK--SDFVLISLPLTDETRGMINSKMLSLFR---KGLAIINVARA 211 (303)
T ss_pred CCCCc-----ccCc--------c--cccCCHHHHHhh--CCEEEECCCCCchhhcCcCHHHHhcCC---CCeEEEECCCc
Confidence 87521 0101 0 012478898876 888874321 23688999999995 66788877764
Q ss_pred C
Q 007112 475 T 475 (617)
Q Consensus 475 t 475 (617)
.
T Consensus 212 ~ 212 (303)
T PRK06436 212 D 212 (303)
T ss_pred c
Confidence 3
No 157
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=80.75 E-value=3.8 Score=42.17 Aligned_cols=57 Identities=21% Similarity=0.291 Sum_probs=38.3
Q ss_pred CCceeecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 325 SHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 325 ~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+..-||=|- .|++.+++..+...+..+++++|+|.+|..++..+.+ .| .+++++|+.
T Consensus 93 ~l~g~NTD~--------~G~~~~l~~~~~~~~~k~vliiGaGg~g~aia~~L~~-----~g-------~~v~v~~R~ 149 (270)
T TIGR00507 93 KLVGYNTDG--------IGLVSDLERLIPLRPNQRVLIIGAGGAARAVALPLLK-----AD-------CNVIIANRT 149 (270)
T ss_pred EEEEEcCCH--------HHHHHHHHhcCCCccCCEEEEEcCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 345556554 4556666654555667899999999887777776653 24 368888864
No 158
>PRK07574 formate dehydrogenase; Provisional
Probab=80.52 E-value=11 Score=41.69 Aligned_cols=116 Identities=16% Similarity=0.153 Sum_probs=74.6
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHH
Q 007112 352 GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLD 431 (617)
Q Consensus 352 g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e 431 (617)
+..|.+++|.|+|.|..|..||+.+... |+ +++.+|+...- . + .. +.+ ......+|.|
T Consensus 187 ~~~L~gktVGIvG~G~IG~~vA~~l~~f-----G~-------~V~~~dr~~~~---~-~-~~---~~~--g~~~~~~l~e 244 (385)
T PRK07574 187 SYDLEGMTVGIVGAGRIGLAVLRRLKPF-----DV-------KLHYTDRHRLP---E-E-VE---QEL--GLTYHVSFDS 244 (385)
T ss_pred ceecCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCCCCc---h-h-hH---hhc--CceecCCHHH
Confidence 3468999999999999999999998643 54 57788875321 0 0 00 011 1112357999
Q ss_pred HHhccCCcEEEeecC----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc--cccCcEEEeeC
Q 007112 432 AVKAIKPTMLMGTSG----VGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYT--WSKGQAIFASG 498 (617)
Q Consensus 432 aV~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~--wT~GraifASG 498 (617)
+++. .|+++=.-- .-++|+++.+..|. +..++.=.|. .++.-|+|+. ...|+.-.|..
T Consensus 245 ll~~--aDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~iVDe~AL~~AL~sG~i~GAaL 308 (385)
T PRK07574 245 LVSV--CDVVTIHCPLHPETEHLFDADVLSRMK---RGSYLVNTAR----GKIVDRDAVVRALESGHLAGYAG 308 (385)
T ss_pred Hhhc--CCEEEEcCCCCHHHHHHhCHHHHhcCC---CCcEEEECCC----CchhhHHHHHHHHHhCCccEEEE
Confidence 9987 898874322 13689999999995 5667776665 4555554442 23566655544
No 159
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=80.51 E-value=0.77 Score=56.18 Aligned_cols=124 Identities=23% Similarity=0.333 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhcCCCeeeeeecCCCCcHH------------HHHHHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCC
Q 007112 288 LQEFMTAVKQNYGEKVLIQFEDFANHNAF------------ELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTL 355 (617)
Q Consensus 288 idefv~av~~~fGp~~lIqfEDf~~~~Af------------~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l 355 (617)
..|.++++..+|-| +=||.-|..-.+. ..-+||..++.+|..+.| ..|
T Consensus 358 aQEViKaisgKf~P--i~q~~~~D~~e~l~~~~~~~~~~~~~~~~RYdrqi~l~G~~~Q------------------~kL 417 (1008)
T TIGR01408 358 SQEVLKAVTGKFSP--LCQWFYFDSAESLPSLGKPECEEFLPRGDRYDAQIAVFGDTFQ------------------QKL 417 (1008)
T ss_pred HHHHHHHhcCCCCC--ceeeEEeehhhhCCcccCcchhhccchhhhhHHHHHHcCHHHH------------------HHH
Confidence 47788888888866 2245444322221 123455444444442221 457
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhccc--C-CCCCHHHH
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH--A-PIKSLLDA 432 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~--~-~~~~L~ea 432 (617)
++.||+++|||..|+-+++.|+.. |+.-. ...+|.++|-+ .|..+ +|+. |--|-.++ . ......+.
T Consensus 418 ~~~kVlvvGaGGlG~e~lknLal~-----Gv~~~-~~G~i~IvD~D-~Ve~S---NLnR-QfLf~~~dIGk~Ka~vaa~~ 486 (1008)
T TIGR01408 418 QNLNIFLVGCGAIGCEMLKNFALM-----GVGTG-KKGMITVTDPD-LIEKS---NLNR-QFLFRPHHIGKPKSYTAADA 486 (1008)
T ss_pred hhCcEEEECCChHHHHHHHHHHHh-----CCCcC-CCCeEEEECCC-Eeccc---ccCc-CcCCChhHcCcHHHHHHHHH
Confidence 789999999999999999999875 55110 13689999987 33332 2542 21121111 0 01245566
Q ss_pred HhccCCcEEE
Q 007112 433 VKAIKPTMLM 442 (617)
Q Consensus 433 V~~vkPtvLI 442 (617)
++...|++=|
T Consensus 487 l~~~Np~v~I 496 (1008)
T TIGR01408 487 TLKINPQIKI 496 (1008)
T ss_pred HHHHCCCCEE
Confidence 6666676554
No 160
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=80.41 E-value=14 Score=39.78 Aligned_cols=119 Identities=14% Similarity=0.159 Sum_probs=73.2
Q ss_pred CCCceeec-Cc--cchhHHHHHHHHHHHHH-------------------hCCCCCCceEEEeCcChHHHHHHHHHHHHHH
Q 007112 324 SSHLVFND-DI--QGTASVVLAGILSALKL-------------------VGGTLADQTFLFLGAGEAGTGIAELIALEMS 381 (617)
Q Consensus 324 ~~~~~FND-Di--QGTaaV~LAgll~Alr~-------------------~g~~l~d~riv~~GAGsAg~GIA~li~~~~~ 381 (617)
..+.+.|- +. +.+|=-+++-+|+.+|- .|..|.+.+|.|+|.|..|..+|+.+..
T Consensus 91 ~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~--- 167 (330)
T PRK12480 91 HNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAG--- 167 (330)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHHh---
Confidence 34555542 22 23445567777766653 2346889999999999999999998864
Q ss_pred hccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeecC-C---CCCCCHHHHH
Q 007112 382 KQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSG-V---GKTFTKEVVE 457 (617)
Q Consensus 382 ~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~-~---~g~Fteevv~ 457 (617)
.|+ +++.+|+.. +. .. .+.+ ...+|.|+++. .|+++=.-- . -+.|.++++.
T Consensus 168 --~G~-------~V~~~d~~~----~~---~~----~~~~---~~~~l~ell~~--aDiVil~lP~t~~t~~li~~~~l~ 222 (330)
T PRK12480 168 --FGA-------TITAYDAYP----NK---DL----DFLT---YKDSVKEAIKD--ADIISLHVPANKESYHLFDKAMFD 222 (330)
T ss_pred --CCC-------EEEEEeCCh----hH---hh----hhhh---ccCCHHHHHhc--CCEEEEeCCCcHHHHHHHhHHHHh
Confidence 253 588888641 10 11 1111 23478898887 787763322 1 1467777777
Q ss_pred HHHcCCCCcEEEecCC
Q 007112 458 AMASFNEKPVIFALSN 473 (617)
Q Consensus 458 ~Ma~~~erPIIFaLSN 473 (617)
.|. +..++.-.|.
T Consensus 223 ~mk---~gavlIN~aR 235 (330)
T PRK12480 223 HVK---KGAILVNAAR 235 (330)
T ss_pred cCC---CCcEEEEcCC
Confidence 775 4556665544
No 161
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.40 E-value=7.4 Score=41.45 Aligned_cols=85 Identities=19% Similarity=0.333 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchh
Q 007112 337 ASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 415 (617)
Q Consensus 337 aaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~ 415 (617)
.-+|-.|++.-++-.|.+++++++|++|.+ ..|.-+|.||... ..| ..+.+|.++
T Consensus 138 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~---~~~-------atVtvchs~-------------- 193 (284)
T PRK14193 138 LPCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRR---SEN-------ATVTLCHTG-------------- 193 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhc---cCC-------CEEEEeCCC--------------
Confidence 467788889999999999999999999976 4688888777531 013 235556553
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007112 416 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 457 (617)
Q Consensus 416 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 457 (617)
..+|.+.+++ +|++|-..|.++.++.|+|+
T Consensus 194 ----------T~~l~~~~k~--ADIvV~AvGkp~~i~~~~ik 223 (284)
T PRK14193 194 ----------TRDLAAHTRR--ADIIVAAAGVAHLVTADMVK 223 (284)
T ss_pred ----------CCCHHHHHHh--CCEEEEecCCcCccCHHHcC
Confidence 2368889987 99999999999999999986
No 162
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.40 E-value=4.6 Score=43.03 Aligned_cols=102 Identities=17% Similarity=0.299 Sum_probs=65.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhc-ccCC--CCCHHHHHhc
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH-EHAP--IKSLLDAVKA 435 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~-~~~~--~~~L~eaV~~ 435 (617)
||.|+|||..|.-+|-+|+. .|+ .+.+.|+|.+-=..++..-+|.+.. .|.. ..-. .++ .+.++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~~~a~g~a~DL~~~~-~~~~~~~~~i~~~~-y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-----LGL-----FSEIVLIDVNEGVAEGEALDFHHAT-ALTYSTNTKIRAGD-YDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHHHHHHHhhh-ccCCCCCEEEEECC-HHHhCC
Confidence 68999999999999998764 255 3579999974111111111233322 2221 0001 134 466776
Q ss_pred cCCcEEEeecCCC---CCCC--------------HHHHHHHHcCCCCcEEEecCCCC
Q 007112 436 IKPTMLMGTSGVG---KTFT--------------KEVVEAMASFNEKPVIFALSNPT 475 (617)
Q Consensus 436 vkPtvLIG~S~~~---g~Ft--------------eevv~~Ma~~~erPIIFaLSNPt 475 (617)
.|++|=+.+.+ | -| +++++.+.+++...|++-.|||.
T Consensus 69 --aDivvitaG~~~kpg-~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPv 122 (307)
T cd05290 69 --ADIIVITAGPSIDPG-NTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPL 122 (307)
T ss_pred --CCEEEECCCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcH
Confidence 89888666653 3 23 47788888999999999999997
No 163
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.31 E-value=8 Score=41.41 Aligned_cols=85 Identities=16% Similarity=0.215 Sum_probs=67.0
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCc
Q 007112 335 GTASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 413 (617)
Q Consensus 335 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~ 413 (617)
+-.-+|-.|++.=++..|.+++++++|++|.+. .|.-+|.||.. .| ..+.+|+++
T Consensus 138 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------aTVt~chs~------------ 193 (294)
T PRK14187 138 CLIPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLG-----EN-------CTVTTVHSA------------ 193 (294)
T ss_pred CccCcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhh-----CC-------CEEEEeCCC------------
Confidence 335677888899999999999999999999764 67777777753 24 346666654
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007112 414 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 457 (617)
Q Consensus 414 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 457 (617)
.++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 194 ------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik 223 (294)
T PRK14187 194 ------------TRDLADYCSK--ADILVAAVGIPNFVKYSWIK 223 (294)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1357788887 99999999999999999996
No 164
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=80.31 E-value=2.3 Score=43.71 Aligned_cols=38 Identities=24% Similarity=0.334 Sum_probs=33.8
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 353 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 353 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
.+|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~-----Gv------g~i~lvD~D 65 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAA-----GV------GTLTLVDFD 65 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 478899999999999999999999774 76 789999998
No 165
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=80.06 E-value=5.5 Score=40.71 Aligned_cols=100 Identities=13% Similarity=0.143 Sum_probs=55.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCC-cccCCchhchhhhcccCCCCCHHHHHhccC
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSS-RKESLQHFKKPWAHEHAPIKSLLDAVKAIK 437 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~-R~~~L~~~k~~fA~~~~~~~~L~eaV~~vk 437 (617)
||.|+|+|+.|..+|..+.+. | .+++++|+++=-.+. +...+.-....+........++.++ + +
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--~ 66 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-----G-------HDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G--P 66 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C--C
Confidence 799999999999999888653 4 468888874211000 0000100000000000112345553 3 4
Q ss_pred CcEEEeecCCCCCCCHHHHHHHHcCC-CCcEEEecCCCC
Q 007112 438 PTMLMGTSGVGKTFTKEVVEAMASFN-EKPVIFALSNPT 475 (617)
Q Consensus 438 PtvLIG~S~~~g~Fteevv~~Ma~~~-erPIIFaLSNPt 475 (617)
+|++| ++... .-++++++.++..- +.-+|+.+.|.-
T Consensus 67 ~d~vi-la~k~-~~~~~~~~~l~~~l~~~~~iv~~~nG~ 103 (304)
T PRK06522 67 QDLVI-LAVKA-YQLPAALPSLAPLLGPDTPVLFLQNGV 103 (304)
T ss_pred CCEEE-Eeccc-ccHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 78777 44433 34799999998643 344677799975
No 166
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.06 E-value=8 Score=41.17 Aligned_cols=85 Identities=16% Similarity=0.262 Sum_probs=67.7
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCc
Q 007112 335 GTASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 413 (617)
Q Consensus 335 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~ 413 (617)
+-.-+|-+|++.=++-.|.++++++++++|-+. .|--+|.||.. .| ..+.+|+++ |
T Consensus 135 ~~~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~-------atVt~chs~---T-------- 191 (282)
T PRK14166 135 GFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLN-----AG-------ATVSVCHIK---T-------- 191 (282)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC---C--------
Confidence 446778888999999999999999999999764 67788877753 24 235566653 1
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007112 414 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 457 (617)
Q Consensus 414 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 457 (617)
++|.+.+++ +|++|-..|.++.||+++|+
T Consensus 192 -------------~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 220 (282)
T PRK14166 192 -------------KDLSLYTRQ--ADLIIVAAGCVNLLRSDMVK 220 (282)
T ss_pred -------------CCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 348888887 99999999999999999986
No 167
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=80.00 E-value=2.4 Score=41.32 Aligned_cols=32 Identities=34% Similarity=0.389 Sum_probs=28.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
||+++|+|..|..||+.|+.. |+ ++|.++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-----GV------GNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999764 75 789999997
No 168
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=79.97 E-value=2.7 Score=45.70 Aligned_cols=109 Identities=22% Similarity=0.337 Sum_probs=72.8
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc----cCCCCCHH
Q 007112 355 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE----HAPIKSLL 430 (617)
Q Consensus 355 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~----~~~~~~L~ 430 (617)
...-+++++|.|-+|+--|++.+ |+. .++.++|.+ -+| |....-.|... ......++
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~-------glg-----A~Vtild~n----~~r---l~~ldd~f~~rv~~~~st~~~ie 226 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAI-------GLG-----ADVTILDLN----IDR---LRQLDDLFGGRVHTLYSTPSNIE 226 (371)
T ss_pred CCCccEEEECCccccchHHHHHh-------ccC-----CeeEEEecC----HHH---HhhhhHhhCceeEEEEcCHHHHH
Confidence 56789999999999999988764 442 467778865 333 44334445432 12334799
Q ss_pred HHHhccCCcEEEee-----cCCCCCCCHHHHHHHHcCC-------CCcEEEecCCCCCCCCCCHHH
Q 007112 431 DAVKAIKPTMLMGT-----SGVGKTFTKEVVEAMASFN-------EKPVIFALSNPTSQSECTAEE 484 (617)
Q Consensus 431 eaV~~vkPtvLIG~-----S~~~g~Fteevv~~Ma~~~-------erPIIFaLSNPt~~aEct~ed 484 (617)
|+|++ .|.+||. +..|.+.|+|+++.|.... +.==+|-=|.||+..+-|.++
T Consensus 227 e~v~~--aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~Et~~~TTh~~PtY~~ 290 (371)
T COG0686 227 EAVKK--ADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCFETSHPTTHDDPTYEV 290 (371)
T ss_pred HHhhh--ccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCCceeccccccCCCCceee
Confidence 99986 9998887 5556679999999996311 111235556777777666554
No 169
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=79.94 E-value=6.9 Score=42.87 Aligned_cols=24 Identities=17% Similarity=0.407 Sum_probs=21.1
Q ss_pred CCceEEEeCcChHHHHHHHHHHHH
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALE 379 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~ 379 (617)
...||.|+|||+-|+.+|..+...
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n 33 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGEN 33 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhc
Confidence 457999999999999999999753
No 170
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=79.69 E-value=3.7 Score=46.20 Aligned_cols=48 Identities=29% Similarity=0.410 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 342 AGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 342 Agll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
.|++.+++..|.++++.+++|+|+|.+|.+++..+.. .|. +++++|++
T Consensus 317 ~G~~~~l~~~~~~~~~k~vlIiGaGgiG~aia~~L~~-----~G~-------~V~i~~R~ 364 (477)
T PRK09310 317 EGLFSLLKQKNIPLNNQHVAIVGAGGAAKAIATTLAR-----AGA-------ELLIFNRT 364 (477)
T ss_pred HHHHHHHHhcCCCcCCCEEEEEcCcHHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 4778888888889999999999999777777766653 352 57777763
No 171
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=79.65 E-value=17 Score=38.85 Aligned_cols=179 Identities=14% Similarity=0.102 Sum_probs=101.9
Q ss_pred chhHHHHHHHHHHHHHh----------------CCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEE
Q 007112 335 GTASVVLAGILSALKLV----------------GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLV 398 (617)
Q Consensus 335 GTaaV~LAgll~Alr~~----------------g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lv 398 (617)
..|--+++-+|+..|-. +..+.++++.|+|.|..|..||+.+... |+ +++.+
T Consensus 98 ~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~vA~~l~af-----G~-------~V~~~ 165 (312)
T PRK15469 98 QMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSKVAQSLQTW-----GF-------PLRCW 165 (312)
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEE
Confidence 44556666666665422 3468899999999999999999999743 64 46777
Q ss_pred ccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeecC----CCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007112 399 DSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSG----VGKTFTKEVVEAMASFNEKPVIFALSNP 474 (617)
Q Consensus 399 D~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLSNP 474 (617)
|+.. .. .+... .+ ....+|.|+++. .|+++=+-. .-+.|+++.++.|. +..++.=.+
T Consensus 166 ~~~~----~~---~~~~~-~~----~~~~~l~e~l~~--aDvvv~~lPlt~~T~~li~~~~l~~mk---~ga~lIN~a-- 226 (312)
T PRK15469 166 SRSR----KS---WPGVQ-SF----AGREELSAFLSQ--TRVLINLLPNTPETVGIINQQLLEQLP---DGAYLLNLA-- 226 (312)
T ss_pred eCCC----CC---CCCce-ee----cccccHHHHHhc--CCEEEECCCCCHHHHHHhHHHHHhcCC---CCcEEEECC--
Confidence 7631 11 11101 11 123579999987 888873211 12577888888885 455666554
Q ss_pred CCCCCCCHHHHh--ccccCcEEEeeCCCCCcceeCCeeeccCCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHHHhc
Q 007112 475 TSQSECTAEEAY--TWSKGQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQ 552 (617)
Q Consensus 475 t~~aEct~edA~--~wT~GraifASGSPF~pv~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~ 552 (617)
+.++--|+|+ ....|+.-.|.--=|++--.... ..-=+..|+++-|=+|- .+. .+.|...+++-+-..
T Consensus 227 --RG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~-~pl~~~~nvi~TPHiag------~t~-~~~~~~~~~~n~~~~ 296 (312)
T PRK15469 227 --RGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPE-SPLWQHPRVAITPHVAA------VTR-PAEAVEYISRTIAQL 296 (312)
T ss_pred --CccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCC-ChhhcCCCeEECCcCCC------CcC-HHHHHHHHHHHHHHH
Confidence 4666666655 23466654443322321111000 00014468888887762 221 234555555555544
Q ss_pred cC
Q 007112 553 VT 554 (617)
Q Consensus 553 v~ 554 (617)
..
T Consensus 297 ~~ 298 (312)
T PRK15469 297 EK 298 (312)
T ss_pred Hc
Confidence 43
No 172
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=79.64 E-value=2.6 Score=38.93 Aligned_cols=94 Identities=16% Similarity=0.187 Sum_probs=55.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhc--c-c-CCCCCHHHHHh
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH--E-H-APIKSLLDAVK 434 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~--~-~-~~~~~L~eaV~ 434 (617)
||+++|+|.-|.-+|+.|+.. |+ ++|.++|.+-+ ..+ +|..+ .|.. + . +....+.+.++
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-----Gv------~~i~ivD~d~v-~~~---nl~r~--~~~~~~~vG~~Ka~~~~~~l~ 63 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-----GV------GKITLIDFDTV-ELS---NLNRQ--FLARQADIGKPKAEVAARRLN 63 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC------CEEEEEcCCCc-Ccc---hhhcc--ccCChhHCCChHHHHHHHHHH
Confidence 689999999999999999764 75 78999999833 221 24322 1221 1 1 11235677777
Q ss_pred ccCCcEEEeecCCCCCCCHHH-HHHHHcCCCCcEEEecCCC
Q 007112 435 AIKPTMLMGTSGVGKTFTKEV-VEAMASFNEKPVIFALSNP 474 (617)
Q Consensus 435 ~vkPtvLIG~S~~~g~Fteev-v~~Ma~~~erPIIFaLSNP 474 (617)
...|.+=|-.-.. .++++. .+.+ .+-.||+.-+..
T Consensus 64 ~~~p~v~i~~~~~--~~~~~~~~~~~---~~~diVi~~~d~ 99 (143)
T cd01483 64 ELNPGVNVTAVPE--GISEDNLDDFL---DGVDLVIDAIDN 99 (143)
T ss_pred HHCCCcEEEEEee--ecChhhHHHHh---cCCCEEEECCCC
Confidence 7777766543332 234332 2223 244566655443
No 173
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=79.63 E-value=25 Score=35.72 Aligned_cols=95 Identities=13% Similarity=0.185 Sum_probs=52.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCC
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKP 438 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkP 438 (617)
||.|+|+|..|..+++-|... |.. .+.+++.|+. . +........+. ......+..|+++. .
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~-----g~~----~~~i~v~~r~----~---~~~~~l~~~~~-~~~~~~~~~~~~~~--a 62 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTS-----PAD----VSEIIVSPRN----A---QIAARLAERFP-KVRIAKDNQAVVDR--S 62 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhC-----CCC----hheEEEECCC----H---HHHHHHHHHcC-CceEeCCHHHHHHh--C
Confidence 689999999999999988642 532 2456666642 1 11222222221 01123567777765 5
Q ss_pred cEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007112 439 TMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPT 475 (617)
Q Consensus 439 tvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 475 (617)
|++| ++..+.. .+++++... ..+..+|+..+-++
T Consensus 63 DvVi-lav~p~~-~~~vl~~l~-~~~~~~vis~~ag~ 96 (258)
T PRK06476 63 DVVF-LAVRPQI-AEEVLRALR-FRPGQTVISVIAAT 96 (258)
T ss_pred CEEE-EEeCHHH-HHHHHHHhc-cCCCCEEEEECCCC
Confidence 6555 3333322 366666652 34456777766655
No 174
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.54 E-value=6.2 Score=43.06 Aligned_cols=114 Identities=19% Similarity=0.228 Sum_probs=59.2
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHh
Q 007112 355 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVK 434 (617)
Q Consensus 355 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~ 434 (617)
+++.+++|.|+|..|.++|+.+.+ .| .++++.|.+-.-.....+.|......+.. ...-.++..
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~-----~G-------~~V~~~d~~~~~~~~~~~~l~~~g~~~~~----~~~~~~~~~ 66 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHK-----LG-------ANVTVNDGKPFSENPEAQELLEEGIKVIC----GSHPLELLD 66 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHH-----CC-------CEEEEEcCCCccchhHHHHHHhcCCEEEe----CCCCHHHhc
Confidence 567899999999999998888764 36 35888886411000000001110000100 011112222
Q ss_pred ccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCC
Q 007112 435 AIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGS 499 (617)
Q Consensus 435 ~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~GraifASGS 499 (617)
. .+|++|=.++.+ --.+++.++.. ..-||+ +.+|. ++.+.+.+.|-.|||
T Consensus 67 ~-~~d~vV~s~gi~-~~~~~~~~a~~--~~i~v~-------~~~el----~~~~~~~~~I~VTGT 116 (447)
T PRK02472 67 E-DFDLMVKNPGIP-YTNPMVEKALE--KGIPII-------TEVEL----AYLISEAPIIGITGS 116 (447)
T ss_pred C-cCCEEEECCCCC-CCCHHHHHHHH--CCCcEE-------eHHHH----HHHhcCCCEEEEeCC
Confidence 1 378888666555 23444444443 345665 23332 334445678888998
No 175
>PRK05442 malate dehydrogenase; Provisional
Probab=79.40 E-value=12 Score=40.31 Aligned_cols=121 Identities=13% Similarity=0.059 Sum_probs=70.9
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcc--cCCcccCCchhchhhhcccCCCCCHHHHHhc
Q 007112 359 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI--VSSRKESLQHFKKPWAHEHAPIKSLLDAVKA 435 (617)
Q Consensus 359 riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi--~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~ 435 (617)
||.|+|| |..|..+|-.|+.. |+-...-...|.|+|.+.=. .++..-+|.+...++-+...-..+..+.+++
T Consensus 6 KV~IiGaaG~VG~~~a~~l~~~-----~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~d 80 (326)
T PRK05442 6 RVAVTGAAGQIGYSLLFRIASG-----DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKD 80 (326)
T ss_pred EEEEECCCcHHHHHHHHHHHhh-----hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCC
Confidence 8999998 99999998877653 33100001379999985311 1111112444333432221112356677877
Q ss_pred cCCcEEEeecCCC---CC-----------CCHHHHHHHHcCC-CCcEEEecCCCCCCCCCCHHHHhccc
Q 007112 436 IKPTMLMGTSGVG---KT-----------FTKEVVEAMASFN-EKPVIFALSNPTSQSECTAEEAYTWS 489 (617)
Q Consensus 436 vkPtvLIG~S~~~---g~-----------Fteevv~~Ma~~~-erPIIFaLSNPt~~aEct~edA~~wT 489 (617)
.|++|=+.+.+ |- .=+++.+.+++++ ...||+-.|||- ....--+++++
T Consensus 81 --aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~k~s 144 (326)
T PRK05442 81 --ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA---NTNALIAMKNA 144 (326)
T ss_pred --CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch---HHHHHHHHHHc
Confidence 89888555543 31 1245677777866 799999999997 34444444544
No 176
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.06 E-value=17 Score=37.49 Aligned_cols=32 Identities=34% Similarity=0.529 Sum_probs=26.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+||.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-----g~-------~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-----GY-------DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-----CC-------ceEEEeCC
Confidence 5899999999999999988643 53 58888854
No 177
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.06 E-value=9.1 Score=41.05 Aligned_cols=89 Identities=19% Similarity=0.265 Sum_probs=66.9
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCc
Q 007112 335 GTASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 413 (617)
Q Consensus 335 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~ 413 (617)
+-.-+|-+|++.=++-.|.++++++++++|.+. .|.-+|.||.. .|+. ....+.+|.|+
T Consensus 139 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~---~~atVtv~hs~------------ 198 (297)
T PRK14168 139 KFLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQ-----KGPG---ANATVTIVHTR------------ 198 (297)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHh-----cccC---CCCEEEEecCC------------
Confidence 445677888888889999999999999999764 57777777753 2221 01235555443
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007112 414 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 457 (617)
Q Consensus 414 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 457 (617)
.++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 199 ------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik 228 (297)
T PRK14168 199 ------------SKNLARHCQR--ADILIVAAGVPNLVKPEWIK 228 (297)
T ss_pred ------------CcCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1358888987 99999999999999999997
No 178
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=78.99 E-value=12 Score=39.03 Aligned_cols=93 Identities=15% Similarity=0.214 Sum_probs=57.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc-cCCCCCHHHHHhcc-
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAPIKSLLDAVKAI- 436 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~-~~~~~~L~eaV~~v- 436 (617)
||.|+|.|..|..+|..|... | .+++++|+.. .+ .+. ++.. .....++.|+++..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-----g-------~~v~v~dr~~----~~---~~~----~~~~g~~~~~~~~e~~~~~~ 58 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-----G-------HEVVGYDRNP----EA---VEA----LAEEGATGADSLEELVAKLP 58 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-----C-------CeEEEEECCH----HH---HHH----HHHCCCeecCCHHHHHhhcC
Confidence 799999999999999998653 5 3577777751 11 111 2221 12235788888765
Q ss_pred CCcEEEeecCCCCCCCHHHHHHHHc-CCCCcEEEecCCCC
Q 007112 437 KPTMLMGTSGVGKTFTKEVVEAMAS-FNEKPVIFALSNPT 475 (617)
Q Consensus 437 kPtvLIG~S~~~g~Fteevv~~Ma~-~~erPIIFaLSNPt 475 (617)
+||++|=+-. .+...++++..+.. ..+..||+-+|+-.
T Consensus 59 ~~dvvi~~v~-~~~~~~~v~~~l~~~l~~g~ivid~st~~ 97 (301)
T PRK09599 59 APRVVWLMVP-AGEITDATIDELAPLLSPGDIVIDGGNSY 97 (301)
T ss_pred CCCEEEEEec-CCcHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 3776653322 33456677665543 34567888887633
No 179
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=78.84 E-value=19 Score=38.35 Aligned_cols=135 Identities=14% Similarity=0.209 Sum_probs=87.6
Q ss_pred CCCceeecC---ccchhHHHHHHHHHHHHHh------------------------CCCCCCceEEEeCcChHHHHHHHHH
Q 007112 324 SSHLVFNDD---IQGTASVVLAGILSALKLV------------------------GGTLADQTFLFLGAGEAGTGIAELI 376 (617)
Q Consensus 324 ~~~~~FNDD---iQGTaaV~LAgll~Alr~~------------------------g~~l~d~riv~~GAGsAg~GIA~li 376 (617)
..+.+.|-- -..+|=-+++-+|+..|-. +..|.++++.|+|-|..|--+|+++
T Consensus 85 ~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~ 164 (311)
T PRK08410 85 KGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIA 164 (311)
T ss_pred CCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHH
Confidence 455555532 1345666777777776532 2468999999999999999999988
Q ss_pred HHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEee----cCCCCCCC
Q 007112 377 ALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGT----SGVGKTFT 452 (617)
Q Consensus 377 ~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~----S~~~g~Ft 452 (617)
.. + |+ +|+.+|+.+- .. + ..| ...+|.|+++. .|+++=. ...-+.|+
T Consensus 165 ~~-f----gm-------~V~~~d~~~~---~~-~------~~~-----~~~~l~ell~~--sDvv~lh~Plt~~T~~li~ 215 (311)
T PRK08410 165 QA-F----GA-------KVVYYSTSGK---NK-N------EEY-----ERVSLEELLKT--SDIISIHAPLNEKTKNLIA 215 (311)
T ss_pred hh-c----CC-------EEEEECCCcc---cc-c------cCc-----eeecHHHHhhc--CCEEEEeCCCCchhhcccC
Confidence 53 2 64 5888888531 10 0 011 13479999987 8888733 22337999
Q ss_pred HHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc--ccCcEE
Q 007112 453 KEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTW--SKGQAI 494 (617)
Q Consensus 453 eevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~w--T~Grai 494 (617)
++.++.|. +..++.=.|. .++-=|+|+-. .+|+.-
T Consensus 216 ~~~~~~Mk---~~a~lIN~aR----G~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 216 YKELKLLK---DGAILINVGR----GGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred HHHHHhCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeE
Confidence 99999996 6667765554 55655555432 457654
No 180
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=78.74 E-value=1.8 Score=43.10 Aligned_cols=77 Identities=16% Similarity=0.275 Sum_probs=53.6
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc---c-CCCCC
Q 007112 353 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE---H-APIKS 428 (617)
Q Consensus 353 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~---~-~~~~~ 428 (617)
+.|++.||+++|+|.-|.=+|+.|+.+ |+ ++|.++|.+- |..+ +|.. +.|... + +....
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~-----GV------g~i~lvD~d~-ve~s---nL~r--qfl~~~~diG~~Ka~a 79 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLS-----GI------GSLTILDDRT-VTEE---DLGA--QFLIPAEDLGQNRAEA 79 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHc-----CC------CEEEEEECCc-ccHh---hCCC--CccccHHHcCchHHHH
Confidence 467889999999999999999999765 76 8899999983 2222 2432 112221 1 11235
Q ss_pred HHHHHhccCCcEEEeecC
Q 007112 429 LLDAVKAIKPTMLMGTSG 446 (617)
Q Consensus 429 L~eaV~~vkPtvLIG~S~ 446 (617)
+.+.++.+.|++-|=...
T Consensus 80 ~~~~L~~lNp~v~i~~~~ 97 (197)
T cd01492 80 SLERLRALNPRVKVSVDT 97 (197)
T ss_pred HHHHHHHHCCCCEEEEEe
Confidence 788899999998775443
No 181
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=78.51 E-value=7.4 Score=44.22 Aligned_cols=98 Identities=15% Similarity=0.074 Sum_probs=54.7
Q ss_pred ccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC---CCCC-----CHHHHhccc------cCcEEEeeCCC
Q 007112 435 AIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTS---QSEC-----TAEEAYTWS------KGQAIFASGSP 500 (617)
Q Consensus 435 ~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~---~aEc-----t~edA~~wT------~GraifASGSP 500 (617)
..+|+.+|.+.+. .++.+-+..-.++-+|=+-+-.-||-. ..|+ |.++++++. =|+..+-.|
T Consensus 111 ~~~~~ailasntS--tl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~-- 186 (507)
T PRK08268 111 IVSPDCILATNTS--SLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTPVRAK-- 186 (507)
T ss_pred hCCCCcEEEECCC--CCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEec--
Confidence 3478888874332 233333333333344446777778643 2222 344444431 133222223
Q ss_pred CCcceeCCeeeccCCCCcccccchhhHHHHHhCCcccCHHHHHHHH
Q 007112 501 FDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAAS 546 (617)
Q Consensus 501 F~pv~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA 546 (617)
..||-.+|-.++|.+.=+..+...--++.+-+.++.
T Consensus 187 ----------d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al 222 (507)
T PRK08268 187 ----------DTPGFIVNRAARPYYTEALRVLEEGVADPATIDAIL 222 (507)
T ss_pred ----------CCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 346789999999988888777776666666666554
No 182
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.29 E-value=10 Score=40.50 Aligned_cols=85 Identities=20% Similarity=0.367 Sum_probs=66.7
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCc
Q 007112 335 GTASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 413 (617)
Q Consensus 335 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~ 413 (617)
+-.-+|-+|++.=++-.|.+++++++|++|.+. .|.-+|.||.. .| ..+.+|+++
T Consensus 135 ~~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~-------atVtichs~------------ 190 (284)
T PRK14170 135 SFVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLN-----EN-------ATVTIAHSR------------ 190 (284)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC------------
Confidence 345677888888899999999999999999764 67777777753 24 246666543
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007112 414 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 457 (617)
Q Consensus 414 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 457 (617)
..+|.+.++. +|++|-..|.++.|+.++|+
T Consensus 191 ------------T~~l~~~~~~--ADIvI~AvG~~~~i~~~~vk 220 (284)
T PRK14170 191 ------------TKDLPQVAKE--ADILVVATGLAKFVKKDYIK 220 (284)
T ss_pred ------------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1347888887 99999999999999999996
No 183
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=78.17 E-value=3.3 Score=46.57 Aligned_cols=85 Identities=18% Similarity=0.167 Sum_probs=62.9
Q ss_pred eeeecCCCCcHHHHHHHHcC-CCc--eeecCccchhHHHHHHHHHHHHHhCC--------CCCCceEEEeCcChHHHHHH
Q 007112 305 IQFEDFANHNAFELLSKYSS-SHL--VFNDDIQGTASVVLAGILSALKLVGG--------TLADQTFLFLGAGEAGTGIA 373 (617)
Q Consensus 305 IqfEDf~~~~Af~lL~ryr~-~~~--~FNDDiQGTaaV~LAgll~Alr~~g~--------~l~d~riv~~GAGsAg~GIA 373 (617)
|.+|=+....-.++.++|.- ..| ++||+....|....+-++.++..... ...+..+||+|||.||+..|
T Consensus 148 i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgGpaGl~aA 227 (517)
T PRK15317 148 ITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDPYDVLVVGGGPAGAAAA 227 (517)
T ss_pred ceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCCCCEEEECCCHHHHHHH
Confidence 66776777777889999974 344 45777888888888899988875322 23456899999999999999
Q ss_pred HHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 374 ELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 374 ~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
..+.. .|+ ++.++|.+
T Consensus 228 ~~la~-----~G~-------~v~li~~~ 243 (517)
T PRK15317 228 IYAAR-----KGI-------RTGIVAER 243 (517)
T ss_pred HHHHH-----CCC-------cEEEEecC
Confidence 88864 364 56666654
No 184
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=78.06 E-value=6.6 Score=41.90 Aligned_cols=126 Identities=17% Similarity=0.254 Sum_probs=76.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhccc--CCCCCHHHHHhc
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH--APIKSLLDAVKA 435 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~--~~~~~L~eaV~~ 435 (617)
.||.|+|||..|..+|-.|+. .|+ ...|.|+|.+-=..++-.-+|.+.. +|.... ...++.++ ++.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~-----~~~-----~~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~~~v~~~~dy~~-~~~ 71 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILA-----KGL-----ADELVLVDVVEDKLKGEAMDLQHGS-AFLKNPKIEADKDYSV-TAN 71 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHHHHHHHhh-ccCCCCEEEECCCHHH-hCC
Confidence 599999999999999887753 255 4679999974211111111233322 332211 11245554 666
Q ss_pred cCCcEEEeecCCCCC--CCH------------HHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc--cCcEEEeeCC
Q 007112 436 IKPTMLMGTSGVGKT--FTK------------EVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWS--KGQAIFASGS 499 (617)
Q Consensus 436 vkPtvLIG~S~~~g~--Fte------------evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT--~GraifASGS 499 (617)
.|++|=+.+.+.. -|. ++++.+.+++..-+|+-.|||.. ....-+++++ .-+-+|++|.
T Consensus 72 --adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d---~~t~~~~k~sg~p~~~viG~gt 146 (312)
T cd05293 72 --SKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVD---IMTYVAWKLSGLPKHRVIGSGC 146 (312)
T ss_pred --CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHH---HHHHHHHHHhCCCHHHEEecCc
Confidence 8988755554311 333 67788889999999999999983 4555555553 1124777765
Q ss_pred C
Q 007112 500 P 500 (617)
Q Consensus 500 P 500 (617)
-
T Consensus 147 ~ 147 (312)
T cd05293 147 N 147 (312)
T ss_pred h
Confidence 4
No 185
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=78.04 E-value=36 Score=35.20 Aligned_cols=98 Identities=14% Similarity=0.197 Sum_probs=54.5
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccC-CCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhc
Q 007112 357 DQTFLFLGAGEAGTGIAELIALEMSKQTK-APIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKA 435 (617)
Q Consensus 357 d~riv~~GAGsAg~GIA~li~~~~~~~~G-~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~ 435 (617)
..||.|+|+|.-|..||+.+... | +. ..+++++|+. .. +.+...+..|- .....+..|+++.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~-----g~~~----~~~v~v~~r~----~~--~~~~~l~~~~g--~~~~~~~~e~~~~ 65 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHA-----NVVK----GEQITVSNRS----NE--TRLQELHQKYG--VKGTHNKKELLTD 65 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----CCCC----cceEEEECCC----CH--HHHHHHHHhcC--ceEeCCHHHHHhc
Confidence 45899999999999999988643 4 11 1456766652 10 11222222221 1122466677764
Q ss_pred cCCcEEEeecCCCCCCCHHHHHHHHcC-CCCcEEEecCCCC
Q 007112 436 IKPTMLMGTSGVGKTFTKEVVEAMASF-NEKPVIFALSNPT 475 (617)
Q Consensus 436 vkPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPt 475 (617)
.|++| ++-.+ -..+++++.+... .+..+|..+++-+
T Consensus 66 --aDvVi-lav~p-~~~~~vl~~l~~~~~~~~liIs~~aGi 102 (279)
T PRK07679 66 --ANILF-LAMKP-KDVAEALIPFKEYIHNNQLIISLLAGV 102 (279)
T ss_pred --CCEEE-EEeCH-HHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 66554 33333 2355666666543 3456777776554
No 186
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=77.90 E-value=2.2 Score=50.09 Aligned_cols=40 Identities=25% Similarity=0.347 Sum_probs=34.7
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCc
Q 007112 353 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 403 (617)
Q Consensus 353 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GL 403 (617)
.+|++.||+++|||.-|.-+|+.|+.+ |+ ++|.+||.+-+
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~-----GV------g~ItlVD~D~V 373 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGW-----GV------RHITFVDNGKV 373 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCEE
Confidence 457889999999999999999999875 76 78999998733
No 187
>PRK06141 ornithine cyclodeaminase; Validated
Probab=77.77 E-value=16 Score=38.75 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=63.7
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc---cCCCCCHHHH
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE---HAPIKSLLDA 432 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~---~~~~~~L~ea 432 (617)
...+++|+|+|..|..++..+... .+. ++|+++|+. .++ ...+...+.+. .....++.++
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~----~~~------~~V~V~~Rs----~~~---a~~~a~~~~~~g~~~~~~~~~~~a 186 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASV----RPI------KQVRVWGRD----PAK---AEALAAELRAQGFDAEVVTDLEAA 186 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhc----CCC------CEEEEEcCC----HHH---HHHHHHHHHhcCCceEEeCCHHHH
Confidence 568999999999999998876543 132 678888774 222 23333333221 1124688999
Q ss_pred HhccCCcEEEeecCCC-CCCCHHHHHHHHcCCCCcEEEec-CCCCCCCCCCHHH
Q 007112 433 VKAIKPTMLMGTSGVG-KTFTKEVVEAMASFNEKPVIFAL-SNPTSQSECTAEE 484 (617)
Q Consensus 433 V~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erPIIFaL-SNPt~~aEct~ed 484 (617)
+++ .|++|-+++.. .+|+.+.++ +.-.|-+. |++..+-|+.++-
T Consensus 187 v~~--aDIVi~aT~s~~pvl~~~~l~------~g~~i~~ig~~~~~~~El~~~~ 232 (314)
T PRK06141 187 VRQ--ADIISCATLSTEPLVRGEWLK------PGTHLDLVGNFTPDMRECDDEA 232 (314)
T ss_pred Hhc--CCEEEEeeCCCCCEecHHHcC------CCCEEEeeCCCCcccccCCHHH
Confidence 976 99998766543 346655543 12244444 4456677888753
No 188
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=77.60 E-value=3.6 Score=46.32 Aligned_cols=83 Identities=17% Similarity=0.103 Sum_probs=58.9
Q ss_pred HHHHHhcCCCeeeeeecCCCCcHHHHHHHHcC-CCc--eeecCccchhHHHHHHHHHHHHHh--------CCCCCCceEE
Q 007112 293 TAVKQNYGEKVLIQFEDFANHNAFELLSKYSS-SHL--VFNDDIQGTASVVLAGILSALKLV--------GGTLADQTFL 361 (617)
Q Consensus 293 ~av~~~fGp~~lIqfEDf~~~~Af~lL~ryr~-~~~--~FNDDiQGTaaV~LAgll~Alr~~--------g~~l~d~riv 361 (617)
..+.... |+ |..|=+....-.++.++|.- ..| ++|++..+.+....+-++..++.. ...-.+.++|
T Consensus 140 ~~~a~~~-p~--i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~dVv 216 (515)
T TIGR03140 140 NQMALLN-PN--ISHTMIDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDPYDVL 216 (515)
T ss_pred HHHHHhC-CC--ceEEEEEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCCCCEE
Confidence 3333444 54 44555777777889999974 444 458888888888888888877654 1224457899
Q ss_pred EeCcChHHHHHHHHHHH
Q 007112 362 FLGAGEAGTGIAELIAL 378 (617)
Q Consensus 362 ~~GAGsAg~GIA~li~~ 378 (617)
|+|||+||+..|..+..
T Consensus 217 IIGgGpAGl~AA~~la~ 233 (515)
T TIGR03140 217 VVGGGPAGAAAAIYAAR 233 (515)
T ss_pred EECCCHHHHHHHHHHHH
Confidence 99999999999887765
No 189
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=76.82 E-value=4.4 Score=38.29 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=25.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCC
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 402 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~G 402 (617)
+|||+|+|.||+..|..+.. .| .++.++|+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-----~~-------~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-----PG-------AKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----TT-------SEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhc-----CC-------CeEEEEeccc
Confidence 69999999999999999972 23 5788887643
No 190
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.77 E-value=6.2 Score=38.43 Aligned_cols=75 Identities=19% Similarity=0.257 Sum_probs=40.9
Q ss_pred CCCCceEEEeCcC-hHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhh--------c-cc
Q 007112 354 TLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWA--------H-EH 423 (617)
Q Consensus 354 ~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA--------~-~~ 423 (617)
++++.+++|.||. ..|..+++.+ .+ .|. ++++++++. ++ ++....... . +.
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l----~~-~G~-------~V~~~~r~~----~~---~~~~~~~~~~~~~~~~~~~D~ 62 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRF----AA-EGA-------RVVVTDRNE----EA---AERVAAEILAGGRAIAVAADV 62 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHH----HH-CCC-------EEEEEeCCH----HH---HHHHHHHHhcCCeEEEEECCC
Confidence 4677899999974 4444455544 33 353 588888862 11 111111110 0 11
Q ss_pred CCCCCHHHHHhcc-----CCcEEEeecCC
Q 007112 424 APIKSLLDAVKAI-----KPTMLMGTSGV 447 (617)
Q Consensus 424 ~~~~~L~eaV~~v-----kPtvLIG~S~~ 447 (617)
....++..+++.+ ++|++|=.++.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 91 (251)
T PRK07231 63 SDEADVEAAVAAALERFGSVDILVNNAGT 91 (251)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 2223455555554 78999988775
No 191
>PLN03139 formate dehydrogenase; Provisional
Probab=76.71 E-value=24 Score=39.13 Aligned_cols=141 Identities=16% Similarity=0.092 Sum_probs=84.6
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHH
Q 007112 352 GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLD 431 (617)
Q Consensus 352 g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e 431 (617)
+..|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+... .. + . .+. . ......+|.|
T Consensus 194 ~~~L~gktVGIVG~G~IG~~vA~~L~af-----G~-------~V~~~d~~~~---~~-~-~--~~~-~--g~~~~~~l~e 251 (386)
T PLN03139 194 AYDLEGKTVGTVGAGRIGRLLLQRLKPF-----NC-------NLLYHDRLKM---DP-E-L--EKE-T--GAKFEEDLDA 251 (386)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHHHC-----CC-------EEEEECCCCc---ch-h-h--Hhh-c--CceecCCHHH
Confidence 4579999999999999999999999642 64 4777887532 00 1 0 000 0 0112357999
Q ss_pred HHhccCCcEEEeecC----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHh-cc-ccCcEEEeeCCCCCcce
Q 007112 432 AVKAIKPTMLMGTSG----VGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAY-TW-SKGQAIFASGSPFDPVE 505 (617)
Q Consensus 432 aV~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~-~w-T~GraifASGSPF~pv~ 505 (617)
+++. .|+++=..- .-++|+++.+..|. +.-+++=.|. .++.-|+|+ +. ..|+.-.|..-=|++--
T Consensus 252 ll~~--sDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~iVDe~AL~~AL~sG~l~GAaLDV~~~EP 322 (386)
T PLN03139 252 MLPK--CDVVVINTPLTEKTRGMFNKERIAKMK---KGVLIVNNAR----GAIMDTQAVADACSSGHIGGYGGDVWYPQP 322 (386)
T ss_pred HHhh--CCEEEEeCCCCHHHHHHhCHHHHhhCC---CCeEEEECCC----CchhhHHHHHHHHHcCCceEEEEcCCCCCC
Confidence 9977 888873321 12689999999995 4556665554 455545443 22 35776656554332211
Q ss_pred e--CCeeeccCCCCcccccchhh
Q 007112 506 Y--NGKVFVPGQGNNAYIFPGLG 526 (617)
Q Consensus 506 ~--~Gk~~~p~Q~NN~yiFPGig 526 (617)
. +.. --+..|..+-|=++
T Consensus 323 lp~d~p---L~~~pNvilTPHia 342 (386)
T PLN03139 323 APKDHP---WRYMPNHAMTPHIS 342 (386)
T ss_pred CCCCCh---hhcCCCeEEccccc
Confidence 1 110 01235788888776
No 192
>PRK07680 late competence protein ComER; Validated
Probab=76.43 E-value=6.3 Score=40.48 Aligned_cols=98 Identities=13% Similarity=0.248 Sum_probs=59.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCC
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKP 438 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkP 438 (617)
+|.|+|+|..|..+|..+... |.- ....++++|++ .. ........|. ......+..++++. +
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~-----g~~---~~~~v~v~~r~----~~---~~~~~~~~~~-g~~~~~~~~~~~~~--a 63 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLES-----GAV---KPSQLTITNRT----PA---KAYHIKERYP-GIHVAKTIEEVISQ--S 63 (273)
T ss_pred EEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECCC----HH---HHHHHHHHcC-CeEEECCHHHHHHh--C
Confidence 689999999999999888643 420 12467877764 11 1211111110 01113467777765 7
Q ss_pred cEEEeecCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCC
Q 007112 439 TMLMGTSGVGKTFTKEVVEAMASF-NEKPVIFALSNPTS 476 (617)
Q Consensus 439 tvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPt~ 476 (617)
|++| ++..+ ...+++++.++.+ .+..+|..++|+.+
T Consensus 64 DiVi-lav~p-~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 64 DLIF-ICVKP-LDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred CEEE-EecCH-HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 7775 33333 3478888888754 34568889998763
No 193
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.36 E-value=11 Score=42.12 Aligned_cols=119 Identities=19% Similarity=0.226 Sum_probs=63.7
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCC-chhchhhhcccCCCCCHHHH
Q 007112 354 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESL-QHFKKPWAHEHAPIKSLLDA 432 (617)
Q Consensus 354 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L-~~~k~~fA~~~~~~~~L~ea 432 (617)
.+...||+|+|+|-+|.++|+.+.. .|. .+.+.|++ ......+ .....++... ..-.+-
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~-----~G~-------~V~~~D~~----~~~~~~~l~~~gi~~~~~----~~~~~~ 71 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSE-----LGC-------DVVVADDN----ETARHKLIEVTGVADIST----AEASDQ 71 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHH-----CCC-------EEEEECCC----hHHHHHHHHhcCcEEEeC----CCchhH
Confidence 3566899999999999999999864 363 58888864 1110001 1111111111 111122
Q ss_pred HhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHH---Hhccc-cCcEEEeeCCCCCcceeCC
Q 007112 433 VKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEE---AYTWS-KGQAIFASGSPFDPVEYNG 508 (617)
Q Consensus 433 V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~ed---A~~wT-~GraifASGSPF~pv~~~G 508 (617)
++ ++|.+|=.++++ --.+++.++.. ...||+ +..|. +.. +-.|+ ..+.|-.||| ||
T Consensus 72 ~~--~~d~vV~Spgi~-~~~p~~~~a~~--~gi~v~-------~~~el-~~~~~~~~~~~~~~~vIaVTGT-------nG 131 (473)
T PRK00141 72 LD--SFSLVVTSPGWR-PDSPLLVDAQS--QGLEVI-------GDVEL-AWRLDQAGVFGEPRTWLAVTGT-------NG 131 (473)
T ss_pred hc--CCCEEEeCCCCC-CCCHHHHHHHH--CCCcee-------eHHHH-HHHhhhhhccCCCCCEEEEeCC-------Cc
Confidence 33 378888667766 35566665543 445664 22332 111 00121 2367888998 88
Q ss_pred eeec
Q 007112 509 KVFV 512 (617)
Q Consensus 509 k~~~ 512 (617)
||-+
T Consensus 132 KTTT 135 (473)
T PRK00141 132 KTTT 135 (473)
T ss_pred HHHH
Confidence 7643
No 194
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=75.82 E-value=3.3 Score=44.87 Aligned_cols=38 Identities=24% Similarity=0.311 Sum_probs=33.4
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 353 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 353 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
.+|++.||+++|+|..|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~-----Gv------g~i~lvD~D 61 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGA-----GV------GHITIIDDD 61 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 457889999999999999999998764 76 789999998
No 195
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=75.39 E-value=23 Score=40.44 Aligned_cols=196 Identities=17% Similarity=0.129 Sum_probs=109.0
Q ss_pred CCCceeecC---ccchhHHHHHHHHHHHHH------------------hCCCCCCceEEEeCcChHHHHHHHHHHHHHHh
Q 007112 324 SSHLVFNDD---IQGTASVVLAGILSALKL------------------VGGTLADQTFLFLGAGEAGTGIAELIALEMSK 382 (617)
Q Consensus 324 ~~~~~FNDD---iQGTaaV~LAgll~Alr~------------------~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~ 382 (617)
..+++.|-- -+.+|=-+++.+|+..|- .|..|.++++.|+|-|..|-.+|+.+...
T Consensus 84 ~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 160 (525)
T TIGR01327 84 RGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAF--- 160 (525)
T ss_pred CCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 455555532 124555567777766552 35578999999999999999999998642
Q ss_pred ccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEee----cCCCCCCCHHHHHH
Q 007112 383 QTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGT----SGVGKTFTKEVVEA 458 (617)
Q Consensus 383 ~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~----S~~~g~Fteevv~~ 458 (617)
|+ +++.+|+.. .... .. .+ ......+|.|+++. .|+++=. ...-+.|+++.+..
T Consensus 161 --G~-------~V~~~d~~~--~~~~---~~----~~--g~~~~~~l~ell~~--aDvV~l~lPlt~~T~~li~~~~l~~ 218 (525)
T TIGR01327 161 --GM-------KVLAYDPYI--SPER---AE----QL--GVELVDDLDELLAR--ADFITVHTPLTPETRGLIGAEELAK 218 (525)
T ss_pred --CC-------EEEEECCCC--ChhH---HH----hc--CCEEcCCHHHHHhh--CCEEEEccCCChhhccCcCHHHHhc
Confidence 54 588888741 1110 00 01 01113479999876 7877622 12246889999988
Q ss_pred HHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCeeeccCCCCcccccchhhHHHHHhCCcccC
Q 007112 459 MASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVR 538 (617)
Q Consensus 459 Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~GraifASGSPF~pv~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~It 538 (617)
|. +..++.=.|.-.---|.---+|++ .|+.-.|.=-=|++=-.... .-=+..|+.+-|=+|-...-+ .
T Consensus 219 mk---~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLDVf~~EP~~~~--pL~~~~nvi~TPHia~~t~e~-----~ 286 (525)
T TIGR01327 219 MK---KGVIIVNCARGGIIDEAALYEALE--EGHVRAAALDVFEKEPPTDN--PLFDLDNVIATPHLGASTREA-----Q 286 (525)
T ss_pred CC---CCeEEEEcCCCceeCHHHHHHHHH--cCCeeEEEEecCCCCCCCCC--hhhcCCCeEECCCccccHHHH-----H
Confidence 85 566777666644333333334443 56654442111110000011 112456888888877433222 2
Q ss_pred HHHHHHHHHHHHhccCcc
Q 007112 539 DEMLLAASEALAAQVTQE 556 (617)
Q Consensus 539 d~M~laAA~aLA~~v~~~ 556 (617)
..|...+++.+.+....+
T Consensus 287 ~~~~~~~~~ni~~~~~g~ 304 (525)
T TIGR01327 287 ENVATQVAEQVLDALKGL 304 (525)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 344455555555555433
No 196
>PRK06487 glycerate dehydrogenase; Provisional
Probab=75.04 E-value=69 Score=34.25 Aligned_cols=187 Identities=16% Similarity=0.116 Sum_probs=108.7
Q ss_pred CCCceeecC---ccchhHHHHHHHHHHHHHh------------------------CCCCCCceEEEeCcChHHHHHHHHH
Q 007112 324 SSHLVFNDD---IQGTASVVLAGILSALKLV------------------------GGTLADQTFLFLGAGEAGTGIAELI 376 (617)
Q Consensus 324 ~~~~~FNDD---iQGTaaV~LAgll~Alr~~------------------------g~~l~d~riv~~GAGsAg~GIA~li 376 (617)
..+.+.|-- -+.+|=-+++-+|+..|-. +..|.++++.|+|.|..|..||+++
T Consensus 88 ~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l 167 (317)
T PRK06487 88 RGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLA 167 (317)
T ss_pred CCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHH
Confidence 355555532 1345666777777765532 2358899999999999999999998
Q ss_pred HHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEee----cCCCCCCC
Q 007112 377 ALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGT----SGVGKTFT 452 (617)
Q Consensus 377 ~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~----S~~~g~Ft 452 (617)
... |+ +++.+|+.+ ..+ . + ...+|.|+++. .|+++=. ...-|.|+
T Consensus 168 ~~f-----gm-------~V~~~~~~~-----~~~---~----~-----~~~~l~ell~~--sDiv~l~lPlt~~T~~li~ 216 (317)
T PRK06487 168 EAF-----GM-------RVLIGQLPG-----RPA---R----P-----DRLPLDELLPQ--VDALTLHCPLTEHTRHLIG 216 (317)
T ss_pred hhC-----CC-------EEEEECCCC-----Ccc---c----c-----cccCHHHHHHh--CCEEEECCCCChHHhcCcC
Confidence 532 64 577777652 100 0 0 12379999987 8988732 22347999
Q ss_pred HHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc--cccCcEEEeeCCCC--CcceeCCeeeccCCCCcccccchhhHH
Q 007112 453 KEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYT--WSKGQAIFASGSPF--DPVEYNGKVFVPGQGNNAYIFPGLGLG 528 (617)
Q Consensus 453 eevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~--wT~GraifASGSPF--~pv~~~Gk~~~p~Q~NN~yiFPGiglG 528 (617)
++.+..|. +..++.=.|. .++--|+|+. ..+|+.-.|.=-=| +|..-+..... -+..|+.+-|=+|-.
T Consensus 217 ~~~~~~mk---~ga~lIN~aR----G~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~-~~~pnvilTPHia~~ 288 (317)
T PRK06487 217 ARELALMK---PGALLINTAR----GGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLA-PDIPRLIVTPHSAWG 288 (317)
T ss_pred HHHHhcCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhh-cCCCCEEECCccccC
Confidence 99999995 5667765554 4555554442 23576544422112 11111111110 035689999988722
Q ss_pred HHHhCCcccCHHHHHHHHHHHHhccC
Q 007112 529 LIISGAIRVRDEMLLAASEALAAQVT 554 (617)
Q Consensus 529 ~l~s~a~~Itd~M~laAA~aLA~~v~ 554 (617)
. ..-.+.|...+++.|.....
T Consensus 289 t-----~e~~~~~~~~~~~ni~~~~~ 309 (317)
T PRK06487 289 S-----REARQRIVGQLAENARAFFA 309 (317)
T ss_pred C-----HHHHHHHHHHHHHHHHHHHc
Confidence 2 22234455555555555543
No 197
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=75.04 E-value=35 Score=35.75 Aligned_cols=45 Identities=22% Similarity=0.288 Sum_probs=28.5
Q ss_pred HHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 345 LSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 345 l~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+.|++..+. ..+++++|.|+|+.|...+.+.. + .|. ++++.+|+.
T Consensus 159 ~~al~~~~~-~~g~~VlV~G~G~vG~~aiqlak-~----~G~------~~Vi~~~~~ 203 (343)
T PRK09880 159 IHAAHQAGD-LQGKRVFVSGVGPIGCLIVAAVK-T----LGA------AEIVCADVS 203 (343)
T ss_pred HHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHH-H----cCC------cEEEEEeCC
Confidence 445554433 36899999999977766554332 2 353 568877753
No 198
>PRK06153 hypothetical protein; Provisional
Probab=74.76 E-value=4 Score=45.34 Aligned_cols=164 Identities=19% Similarity=0.274 Sum_probs=88.6
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCeeeeeecCCCCcHHHHHHHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCCceE
Q 007112 281 GQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTF 360 (617)
Q Consensus 281 g~eY~~fidefv~av~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~ri 360 (617)
+..|-++.++.+.-+.---||-..|..+ .++.-|+.... +++=.+||== =|++.= +|+ + ..-.+|++.||
T Consensus 110 ~~~y~~y~~k~~~Y~~ii~~~A~~~~~~--~~~~~~~~~~~-~~~~svf~y~--dt~s~R-~~i-~---~~q~kL~~~~V 179 (393)
T PRK06153 110 GGGYADYYHKMTTYATIISGPARVLDPT--ASARTFRVIED-AEEDSVFNYP--DTASSR-AGI-G---ALSAKLEGQRI 179 (393)
T ss_pred CCCcccHHHHHHHHHHHhcchhhhcCCC--CCCcccCCCCC-cccCCceehh--hhhccc-cCh-H---HHHHHHhhCcE
Confidence 3567777888877766666664444332 22333332111 1112233310 011100 000 0 11246789999
Q ss_pred EEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhccc-----CCCCCHHHHHhc
Q 007112 361 LFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH-----APIKSLLDAVKA 435 (617)
Q Consensus 361 v~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~-----~~~~~L~eaV~~ 435 (617)
+|+|+|..|.-|+++|+.. |+ ++|.++|.+ .|..+ +|+..---|-.+. ....-+.+.++.
T Consensus 180 aIVG~GG~GS~Va~~LAR~-----GV------geI~LVD~D-~Ve~S---NLnRQ~gaf~~~DvGk~~~KVevaa~rl~~ 244 (393)
T PRK06153 180 AIIGLGGTGSYILDLVAKT-----PV------REIHLFDGD-DFLQH---NAFRSPGAASIEELREAPKKVDYFKSRYSN 244 (393)
T ss_pred EEEcCCccHHHHHHHHHHc-----CC------CEEEEECCC-Eeccc---ccccccccCCHhHcCCcchHHHHHHHHHHH
Confidence 9999999999999999874 76 789999998 22222 3443221111110 112347777777
Q ss_pred cCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEE-ecCCCCC
Q 007112 436 IKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIF-ALSNPTS 476 (617)
Q Consensus 436 vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF-aLSNPt~ 476 (617)
+.|.+ ......++++-+..+. +-.+|| ++=|..+
T Consensus 245 in~~I----~~~~~~I~~~n~~~L~---~~DiV~dcvDn~~a 279 (393)
T PRK06153 245 MRRGI----VPHPEYIDEDNVDELD---GFTFVFVCVDKGSS 279 (393)
T ss_pred hCCeE----EEEeecCCHHHHHHhc---CCCEEEEcCCCHHH
Confidence 77754 3344457888877663 445666 4445443
No 199
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=74.60 E-value=56 Score=37.42 Aligned_cols=195 Identities=16% Similarity=0.133 Sum_probs=111.1
Q ss_pred CCCceeecCc---cchhHHHHHHHHHHHHH------------------hCCCCCCceEEEeCcChHHHHHHHHHHHHHHh
Q 007112 324 SSHLVFNDDI---QGTASVVLAGILSALKL------------------VGGTLADQTFLFLGAGEAGTGIAELIALEMSK 382 (617)
Q Consensus 324 ~~~~~FNDDi---QGTaaV~LAgll~Alr~------------------~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~ 382 (617)
..+++.|-.- +.+|=-+++-+|+..|- .|..|.++++.|+|.|..|..+|+.+...
T Consensus 86 ~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 162 (526)
T PRK13581 86 RGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKAF--- 162 (526)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 3556666321 23555667777777653 24568899999999999999999998643
Q ss_pred ccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeecC----CCCCCCHHHHHH
Q 007112 383 QTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSG----VGKTFTKEVVEA 458 (617)
Q Consensus 383 ~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~----~~g~Fteevv~~ 458 (617)
|+ +++.+|+.. ++ +.... + .-...+|.|+++. .|+++=.-. .-++|+++.+..
T Consensus 163 --G~-------~V~~~d~~~----~~-~~~~~----~---g~~~~~l~ell~~--aDiV~l~lP~t~~t~~li~~~~l~~ 219 (526)
T PRK13581 163 --GM-------KVIAYDPYI----SP-ERAAQ----L---GVELVSLDELLAR--ADFITLHTPLTPETRGLIGAEELAK 219 (526)
T ss_pred --CC-------EEEEECCCC----Ch-hHHHh----c---CCEEEcHHHHHhh--CCEEEEccCCChHhhcCcCHHHHhc
Confidence 64 588888742 11 10000 0 0111278899886 788764322 236899999999
Q ss_pred HHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCeeeccCCCCcccccchhhHHHHHhCCcccC
Q 007112 459 MASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVR 538 (617)
Q Consensus 459 Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~GraifASGSPF~pv~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~It 538 (617)
|. +..++.=.|.-.---|.---+|++ .|+.-.|.=-=|++--.....+ =+..|+.+-|=+|-...- -.
T Consensus 220 mk---~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLDVf~~EP~~~~pL--~~~~nvilTPHia~~t~e-----~~ 287 (526)
T PRK13581 220 MK---PGVRIINCARGGIIDEAALAEALK--SGKVAGAALDVFEKEPPTDSPL--FELPNVVVTPHLGASTAE-----AQ 287 (526)
T ss_pred CC---CCeEEEECCCCceeCHHHHHHHHh--cCCeeEEEEecCCCCCCCCchh--hcCCCeeEcCccccchHH-----HH
Confidence 85 566777666644333333334443 5665433211111000001111 134589999987743322 23
Q ss_pred HHHHHHHHHHHHhccCcc
Q 007112 539 DEMLLAASEALAAQVTQE 556 (617)
Q Consensus 539 d~M~laAA~aLA~~v~~~ 556 (617)
..|...+++.+......+
T Consensus 288 ~~~~~~~~~ni~~~~~g~ 305 (526)
T PRK13581 288 ENVAIQVAEQVIDALRGG 305 (526)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 455566666666665543
No 200
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=74.39 E-value=16 Score=38.16 Aligned_cols=93 Identities=14% Similarity=0.179 Sum_probs=56.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc-cCCCCCHHHHHhccC
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAPIKSLLDAVKAIK 437 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~-~~~~~~L~eaV~~vk 437 (617)
+|-|+|.|..|..+|+.+... |. +++++|++ .++ .+. ++.. .....++.|+++..+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-----g~-------~v~v~dr~----~~~---~~~----~~~~g~~~~~s~~~~~~~~~ 58 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-----GH-------EVVGYDVN----QEA---VDV----AGKLGITARHSLEELVSKLE 58 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECC----HHH---HHH----HHHCCCeecCCHHHHHHhCC
Confidence 689999999999999988652 53 47777764 111 111 2111 122357888887643
Q ss_pred -CcEEEeecCCCCCCCHHHHHHHHc-CCCCcEEEecCCCC
Q 007112 438 -PTMLMGTSGVGKTFTKEVVEAMAS-FNEKPVIFALSNPT 475 (617)
Q Consensus 438 -PtvLIG~S~~~g~Fteevv~~Ma~-~~erPIIFaLSNPt 475 (617)
++++|= +.......+++++.+.. ..+..+|.=+|+-.
T Consensus 59 ~advVi~-~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~ 97 (299)
T PRK12490 59 APRTIWV-MVPAGEVTESVIKDLYPLLSPGDIVVDGGNSR 97 (299)
T ss_pred CCCEEEE-EecCchHHHHHHHHHhccCCCCCEEEECCCCC
Confidence 566653 22233356677666543 34567888887633
No 201
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=74.31 E-value=1.5 Score=49.57 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.1
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHH
Q 007112 353 GTLADQTFLFLGAGEAGTGIAELIAL 378 (617)
Q Consensus 353 ~~l~d~riv~~GAGsAg~GIA~li~~ 378 (617)
+...+.||||+|||.||++-|..+.+
T Consensus 17 ~~~~~~kIvIIGAG~AGLaAA~rLle 42 (498)
T KOG0685|consen 17 KARGNAKIVIIGAGIAGLAAATRLLE 42 (498)
T ss_pred hccCCceEEEECCchHHHHHHHHHHH
Confidence 34456699999999999999999984
No 202
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.17 E-value=15 Score=39.48 Aligned_cols=87 Identities=20% Similarity=0.256 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchh
Q 007112 337 ASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 415 (617)
Q Consensus 337 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~ 415 (617)
.-+|-.|++.=++-.+.+++++++|++|.+. .|.-+|.||.. .|.+. --.+.+|.++
T Consensus 137 ~PcTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~~~~---~aTVtvchs~-------------- 194 (293)
T PRK14185 137 VSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQ-----KAYPG---DCTVTVCHSR-------------- 194 (293)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHc-----CCCCC---CCEEEEecCC--------------
Confidence 4667788888889999999999999999765 67777777743 23210 0124444443
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007112 416 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 457 (617)
Q Consensus 416 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 457 (617)
.++|.+.+++ +|++|-..|.++.++.|+|+
T Consensus 195 ----------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 224 (293)
T PRK14185 195 ----------SKNLKKECLE--ADIIIAALGQPEFVKADMVK 224 (293)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1468888987 99999999999999999986
No 203
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=74.06 E-value=16 Score=38.85 Aligned_cols=120 Identities=23% Similarity=0.350 Sum_probs=71.9
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhc----cc--CC---CCC
Q 007112 359 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH----EH--AP---IKS 428 (617)
Q Consensus 359 riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~----~~--~~---~~~ 428 (617)
||.|+|| |..|..+|..++. .|+ ...+.++|++--+ +.+..++.++.+ .. .. ..+
T Consensus 2 kI~IiGatG~vG~~~a~~l~~-----~g~-----~~~v~lvd~~~~~-----~~l~~~~~dl~d~~~~~~~~~~i~~~~d 66 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAK-----EDV-----VKEINLISRPKSL-----EKLKGLRLDIYDALAAAGIDAEIKISSD 66 (309)
T ss_pred EEEEECCCChHHHHHHHHHHh-----CCC-----CCEEEEEECcccc-----cccccccchhhhchhccCCCcEEEECCC
Confidence 7999998 9999999998765 254 2479999985211 112222222211 00 11 124
Q ss_pred HHHHHhccCCcEEEeecCCCC--------------CCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccc--Cc
Q 007112 429 LLDAVKAIKPTMLMGTSGVGK--------------TFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSK--GQ 492 (617)
Q Consensus 429 L~eaV~~vkPtvLIG~S~~~g--------------~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~--Gr 492 (617)
.+.++. .|+.|=+.+.+. -+-+++++.|.+++...+|+-.+||. .+..-.+++++. .+
T Consensus 67 -~~~l~~--aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npv---d~~t~~~~~~~g~~~~ 140 (309)
T cd05294 67 -LSDVAG--SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPV---DVMTYKALKESGFDKN 140 (309)
T ss_pred -HHHhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCch---HHHHHHHHHhcCCCHH
Confidence 355766 888886665431 23567788888899999999999997 222233443321 12
Q ss_pred EEEeeCC
Q 007112 493 AIFASGS 499 (617)
Q Consensus 493 aifASGS 499 (617)
-+|++|.
T Consensus 141 ~viG~gt 147 (309)
T cd05294 141 RVFGLGT 147 (309)
T ss_pred HEeeccc
Confidence 3666664
No 204
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.71 E-value=16 Score=38.89 Aligned_cols=85 Identities=20% Similarity=0.289 Sum_probs=66.6
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCc
Q 007112 335 GTASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 413 (617)
Q Consensus 335 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~ 413 (617)
+-.-+|-.|++.=++-.|.+++++++|++|.+. .|.-+|.||.. .|. .+.+|.|+
T Consensus 134 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------tVtichs~------------ 189 (282)
T PRK14169 134 TVVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVN-----HDA-------TVTIAHSK------------ 189 (282)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEECCC------------
Confidence 345677888888899999999999999999764 67788877753 242 35555443
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007112 414 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 457 (617)
Q Consensus 414 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 457 (617)
..+|.+.+++ +|++|-..|.++.|+.|+|+
T Consensus 190 ------------T~~l~~~~~~--ADIvI~AvG~p~~i~~~~vk 219 (282)
T PRK14169 190 ------------TRNLKQLTKE--ADILVVAVGVPHFIGADAVK 219 (282)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1258888887 99999999999999999986
No 205
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.65 E-value=15 Score=39.13 Aligned_cols=86 Identities=19% Similarity=0.239 Sum_probs=66.8
Q ss_pred cchhHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCC
Q 007112 334 QGTASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESL 412 (617)
Q Consensus 334 QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L 412 (617)
.+-.-+|-.|++.=++-.|.+|++.++|++|.+. .|--+|.||.. .|. .+.+|+++
T Consensus 135 ~~~~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~A-------TVt~chs~----------- 191 (282)
T PRK14180 135 KCLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLN-----AKA-------TVTTCHRF----------- 191 (282)
T ss_pred CCcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEEcCC-----------
Confidence 3446778888999999999999999999999764 68888887753 242 35556543
Q ss_pred chhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007112 413 QHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 457 (617)
Q Consensus 413 ~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 457 (617)
.++|.+.+++ +|++|-..|.++.|++++|+
T Consensus 192 -------------T~dl~~~~k~--ADIvIsAvGkp~~i~~~~vk 221 (282)
T PRK14180 192 -------------TTDLKSHTTK--ADILIVAVGKPNFITADMVK 221 (282)
T ss_pred -------------CCCHHHHhhh--cCEEEEccCCcCcCCHHHcC
Confidence 1256677776 99999999999999999986
No 206
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.56 E-value=17 Score=38.83 Aligned_cols=83 Identities=16% Similarity=0.220 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchh
Q 007112 337 ASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 415 (617)
Q Consensus 337 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~ 415 (617)
.-+|-.|++.=++-.+.++++++++++|-+. .|.-+|.||.. .| ..+.+|+++
T Consensus 137 ~PcTp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------AtVtichs~-------------- 190 (282)
T PRK14182 137 RPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLE-----RH-------ATVTIAHSR-------------- 190 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC--------------
Confidence 4667888888899999999999999999764 57777777753 23 235555442
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007112 416 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 457 (617)
Q Consensus 416 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 457 (617)
.++|.+.+++ +|++|-..|.++.+++++|+
T Consensus 191 ----------T~nl~~~~~~--ADIvI~AvGk~~~i~~~~ik 220 (282)
T PRK14182 191 ----------TADLAGEVGR--ADILVAAIGKAELVKGAWVK 220 (282)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1357788887 99999999999999999996
No 207
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=73.56 E-value=19 Score=38.07 Aligned_cols=105 Identities=13% Similarity=0.203 Sum_probs=59.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccC-CCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhcc
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTK-APIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAI 436 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G-~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~v 436 (617)
.||.|+|+|..|-.|+.-|... | ++ .++|+++|+. . +........|--. ...+..++++.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~-----g~~~----~~~I~v~~~~----~---e~~~~l~~~~g~~--~~~~~~~~~~~- 62 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKS-----GALP----PEEIIVTNRS----E---EKRAALAAEYGVV--TTTDNQEAVEE- 62 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhc-----CCCC----cceEEEeCCC----H---HHHHHHHHHcCCc--ccCcHHHHHhh-
Confidence 5899999999998888877654 5 32 3678877764 1 1122333344211 13455666665
Q ss_pred CCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc
Q 007112 437 KPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWS 489 (617)
Q Consensus 437 kPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT 489 (617)
.|+++ ++-.|. .=++|++.+....+..+|..+.=.. +.++.-.|.
T Consensus 63 -advv~-LavKPq-~~~~vl~~l~~~~~~~lvISiaAGv-----~~~~l~~~l 107 (266)
T COG0345 63 -ADVVF-LAVKPQ-DLEEVLSKLKPLTKDKLVISIAAGV-----SIETLERLL 107 (266)
T ss_pred -CCEEE-EEeChH-hHHHHHHHhhcccCCCEEEEEeCCC-----CHHHHHHHc
Confidence 66666 444442 3345666665444555555554333 445555554
No 208
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.48 E-value=1.8 Score=49.17 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=26.7
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCe
Q 007112 355 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKK 394 (617)
Q Consensus 355 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~ 394 (617)
.+..+|+|+|||-||+..|++|.+.-. .+..-|||.|
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~---~V~VLEARdR 49 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGF---DVLVLEARDR 49 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCC---ceEEEeccCC
Confidence 344689999999999999999987622 1334455544
No 209
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=73.30 E-value=10 Score=39.89 Aligned_cols=106 Identities=16% Similarity=0.107 Sum_probs=59.6
Q ss_pred CCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCch-hchhhhc-ccCCCCCHHH
Q 007112 355 LADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH-FKKPWAH-EHAPIKSLLD 431 (617)
Q Consensus 355 l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~-~k~~fA~-~~~~~~~L~e 431 (617)
++..+|+|.|| |-.|..+++.+++ .| .+++.+|++.--.....+.+.. .+..+.. +..+..++.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~-----~G-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 69 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLE-----LG-------AEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRK 69 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHH-----CC-------CEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHH
Confidence 35678999996 7777777777764 25 3577787652100000000000 0001111 1122346778
Q ss_pred HHhccCCcEEEeecCCCCC----------------CCHHHHHHHHcCC-CCcEEEecC
Q 007112 432 AVKAIKPTMLMGTSGVGKT----------------FTKEVVEAMASFN-EKPVIFALS 472 (617)
Q Consensus 432 aV~~vkPtvLIG~S~~~g~----------------Fteevv~~Ma~~~-erPIIFaLS 472 (617)
+++..+||++|=+.+.... .+..+++++...+ .+.+||.=|
T Consensus 70 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 70 AIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred HHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 8888899999988764311 1345677776554 457888655
No 210
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=72.99 E-value=24 Score=35.92 Aligned_cols=47 Identities=28% Similarity=0.400 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcc
Q 007112 342 AGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDS 400 (617)
Q Consensus 342 Agll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~ 400 (617)
+..+.|++..+. ..+++++|+|+|..|.-.+.+. .+ .|. ++++.+|+
T Consensus 107 ~ta~~al~~~~~-~~g~~VlV~G~G~vG~~~~~~a-k~----~G~------~~Vi~~~~ 153 (280)
T TIGR03366 107 ATVMAALEAAGD-LKGRRVLVVGAGMLGLTAAAAA-AA----AGA------ARVVAADP 153 (280)
T ss_pred HHHHHHHHhccC-CCCCEEEEECCCHHHHHHHHHH-HH----cCC------CEEEEECC
Confidence 334556655544 3788999999987665544433 22 364 56887764
No 211
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=72.58 E-value=15 Score=40.57 Aligned_cols=83 Identities=12% Similarity=0.209 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchh
Q 007112 337 ASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 415 (617)
Q Consensus 337 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~ 415 (617)
.-+|-.|++.=++..+.+++.+++|++|-+. .|.-+|.||.. .| ..+.+|.++
T Consensus 211 ~PCTp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~-----~~-------ATVTicHs~-------------- 264 (364)
T PLN02616 211 VPCTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQR-----ED-------ATVSIVHSR-------------- 264 (364)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CC-------CeEEEeCCC--------------
Confidence 4566777888889999999999999999764 57777777753 24 235666443
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007112 416 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 457 (617)
Q Consensus 416 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 457 (617)
.++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 265 ----------T~nl~~~~r~--ADIVIsAvGkp~~i~~d~vK 294 (364)
T PLN02616 265 ----------TKNPEEITRE--ADIIISAVGQPNMVRGSWIK 294 (364)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCcCCHHHcC
Confidence 1468888887 99999999999999999997
No 212
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=72.46 E-value=4.3 Score=45.68 Aligned_cols=125 Identities=15% Similarity=0.286 Sum_probs=83.0
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc-cCC-----CCCH
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAP-----IKSL 429 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~-~~~-----~~~L 429 (617)
+..||+|+||||.. -.+++...+.+...++. ..|||+|-+ .+|.+.....-+.+.+. ..+ ..++
T Consensus 2 ~~~KI~iIGgGSt~--tp~~v~g~l~~~e~l~~----~el~L~Did----~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~ 71 (442)
T COG1486 2 KKFKIVIIGGGSTY--TPKLLLGDLARTEELPV----RELALYDID----EERLKIIAILAKKLVEEAGAPVKVEATTDR 71 (442)
T ss_pred CcceEEEECCCccc--cHHHHHHHHhcCccCCc----ceEEEEeCC----HHHHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 45799999999985 67888887777666764 689999975 55533111222233322 122 2588
Q ss_pred HHHHhccCCcEEEee--------------------------cCCCCCCC--------HHHHHHHHcCCCCcEEEecCCCC
Q 007112 430 LDAVKAIKPTMLMGT--------------------------SGVGKTFT--------KEVVEAMASFNEKPVIFALSNPT 475 (617)
Q Consensus 430 ~eaV~~vkPtvLIG~--------------------------S~~~g~Ft--------eevv~~Ma~~~erPIIFaLSNPt 475 (617)
.||++. +|-.|=. .++||.|. -|+++.|-+.|+.--++=.+||-
T Consensus 72 ~eAl~g--AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~ 149 (442)
T COG1486 72 REALEG--ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPA 149 (442)
T ss_pred HHHhcC--CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChH
Confidence 999987 6655422 34445443 38899999999999999999998
Q ss_pred CCCCCCHHHHhccccC-cEEE
Q 007112 476 SQSECTAEEAYTWSKG-QAIF 495 (617)
Q Consensus 476 ~~aEct~edA~~wT~G-raif 495 (617)
+++|- -+++|+.+ +.|=
T Consensus 150 --~~vTe-Av~r~~~~~K~VG 167 (442)
T COG1486 150 --AIVTE-AVRRLYPKIKIVG 167 (442)
T ss_pred --HHHHH-HHHHhCCCCcEEe
Confidence 77774 44555554 4443
No 213
>PRK06270 homoserine dehydrogenase; Provisional
Probab=72.32 E-value=28 Score=37.46 Aligned_cols=105 Identities=19% Similarity=0.243 Sum_probs=64.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHH---HHhccCCCHHhhcCeEEEEccCCcccCCcccCCchh-chhhhcccC---------
Q 007112 358 QTFLFLGAGEAGTGIAELIALE---MSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF-KKPWAHEHA--------- 424 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~---~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~-k~~fA~~~~--------- 424 (617)
-||.++|.|..|.+++++|.+. +.++.|+. -+=.-++|++|.+.+.+. ++.. -..|+.+..
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~----~~vvai~d~~~~~~~~~G--i~~~~~~~~~~~~~~~~~~~~~~ 76 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLD----LKVVAIADSSGSAIDPDG--LDLELALKVKEETGKLADYPEGG 76 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCCcccCcCC--CCHHHHHHHHhccCCcccCcccc
Confidence 4899999999999999998653 22222321 122456799998887653 3221 122332211
Q ss_pred CCCCHHHHHhccCCcEEEeecCCC---CCCCHHH-HHHHHcCCCCcEEEe
Q 007112 425 PIKSLLDAVKAIKPTMLMGTSGVG---KTFTKEV-VEAMASFNEKPVIFA 470 (617)
Q Consensus 425 ~~~~L~eaV~~vkPtvLIG~S~~~---g~Fteev-v~~Ma~~~erPIIFa 470 (617)
...++.|+++...+||+|=++... +-...++ .+++. +.++||.+
T Consensus 77 ~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~--~GkhVVta 124 (341)
T PRK06270 77 GEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALE--RGKHVVTS 124 (341)
T ss_pred ccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHH--CCCEEEcC
Confidence 123889999888899999776531 2223455 44454 46788873
No 214
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=72.07 E-value=8.3 Score=35.40 Aligned_cols=95 Identities=15% Similarity=0.140 Sum_probs=47.9
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccC
Q 007112 359 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIK 437 (617)
Q Consensus 359 riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vk 437 (617)
||+++|+ |-.|-.|++.+.+. .|+ +=...+|++.=-..+. ++.+.-......-+-..+|.++++.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~----~~~------~lv~~v~~~~~~~~g~--d~g~~~~~~~~~~~v~~~l~~~~~~-- 67 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILES----PGF------ELVGAVDRKPSAKVGK--DVGELAGIGPLGVPVTDDLEELLEE-- 67 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS----TTE------EEEEEEETTTSTTTTS--BCHHHCTSST-SSBEBS-HHHHTTH--
T ss_pred EEEEECCCCHHHHHHHHHHHhc----CCc------EEEEEEecCCcccccc--hhhhhhCcCCcccccchhHHHhccc--
Confidence 8999999 99999999998762 343 3467788876111111 1111100000000112467676666
Q ss_pred CcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEe
Q 007112 438 PTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFA 470 (617)
Q Consensus 438 PtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 470 (617)
+||+|=.|... -..+.++...++ ..|+|..
T Consensus 68 ~DVvIDfT~p~--~~~~~~~~~~~~-g~~~ViG 97 (124)
T PF01113_consen 68 ADVVIDFTNPD--AVYDNLEYALKH-GVPLVIG 97 (124)
T ss_dssp -SEEEEES-HH--HHHHHHHHHHHH-T-EEEEE
T ss_pred CCEEEEcCChH--HhHHHHHHHHhC-CCCEEEE
Confidence 77777666432 233444444333 4455543
No 215
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.84 E-value=18 Score=38.82 Aligned_cols=87 Identities=14% Similarity=0.265 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchh
Q 007112 337 ASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 415 (617)
Q Consensus 337 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~ 415 (617)
.-+|-.|++.=++-.|.++++++++++|.+. -|.-+|.||... +.. ....+.+|.++
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~-----~~~---~~aTVtvchs~-------------- 194 (297)
T PRK14167 137 KPCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQK-----ADG---GNATVTVCHSR-------------- 194 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcC-----ccC---CCCEEEEeCCC--------------
Confidence 4567888888899999999999999999764 677788777531 110 00234444442
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007112 416 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 457 (617)
Q Consensus 416 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 457 (617)
.++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 195 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 224 (297)
T PRK14167 195 ----------TDDLAAKTRR--ADIVVAAAGVPELIDGSMLS 224 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1358888887 99999999999999999997
No 216
>PRK06932 glycerate dehydrogenase; Provisional
Probab=71.77 E-value=32 Score=36.75 Aligned_cols=138 Identities=15% Similarity=0.181 Sum_probs=82.8
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHH
Q 007112 353 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDA 432 (617)
Q Consensus 353 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~ea 432 (617)
..|.++++.|+|-|..|--+|+++... |+ +++.+|+..- ... . ....+|.|+
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~f-----g~-------~V~~~~~~~~------~~~---~-------~~~~~l~el 194 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQAL-----GM-------KVLYAEHKGA------SVC---R-------EGYTPFEEV 194 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcC-----CC-------EEEEECCCcc------ccc---c-------cccCCHHHH
Confidence 468899999999999999999988532 64 4666665310 000 0 113479999
Q ss_pred HhccCCcEEEee----cCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc--cccCcEEEeeCCCCC--cc
Q 007112 433 VKAIKPTMLMGT----SGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYT--WSKGQAIFASGSPFD--PV 504 (617)
Q Consensus 433 V~~vkPtvLIG~----S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~--wT~GraifASGSPF~--pv 504 (617)
++. .|+++=. ...-|.|+++.+..|. +..++.=.|. .++-=|+|+. ..+|+.-.|.--=|+ |.
T Consensus 195 l~~--sDiv~l~~Plt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~ 265 (314)
T PRK06932 195 LKQ--ADIVTLHCPLTETTQNLINAETLALMK---PTAFLINTGR----GPLVDEQALLDALENGKIAGAALDVLVKEPP 265 (314)
T ss_pred HHh--CCEEEEcCCCChHHhcccCHHHHHhCC---CCeEEEECCC----ccccCHHHHHHHHHcCCccEEEEecCCCCCC
Confidence 987 8988832 2334799999999995 5667776554 4555554442 235665444332221 11
Q ss_pred eeCCeeec-cCCCCcccccchhhH
Q 007112 505 EYNGKVFV-PGQGNNAYIFPGLGL 527 (617)
Q Consensus 505 ~~~Gk~~~-p~Q~NN~yiFPGigl 527 (617)
.-+.--.. --+..|+.+-|=+|-
T Consensus 266 ~~~~pl~~~~~~~pnvilTPHia~ 289 (314)
T PRK06932 266 EKDNPLIQAAKRLPNLLITPHIAW 289 (314)
T ss_pred CCCChhhHhhcCCCCEEECCcccc
Confidence 11110000 013568888887763
No 217
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.73 E-value=18 Score=38.62 Aligned_cols=84 Identities=24% Similarity=0.309 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCch
Q 007112 336 TASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 414 (617)
Q Consensus 336 TaaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~ 414 (617)
-.-+|-.|++.=++-.|.+++++++|++|.+ ..|.-+|.||.. .| ..+.+|.|+
T Consensus 134 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------aTVtichs~------------- 188 (287)
T PRK14173 134 LEPCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLR-----ED-------ATVTLAHSK------------- 188 (287)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEeCCC-------------
Confidence 3466778888888999999999999999976 468888888753 24 235555543
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007112 415 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 457 (617)
Q Consensus 415 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 457 (617)
..+|.+.+++ +|++|-..|.++.++.++|+
T Consensus 189 -----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~vk 218 (287)
T PRK14173 189 -----------TQDLPAVTRR--ADVLVVAVGRPHLITPEMVR 218 (287)
T ss_pred -----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1247888887 99999999999999999986
No 218
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=71.58 E-value=12 Score=39.64 Aligned_cols=126 Identities=20% Similarity=0.298 Sum_probs=73.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccC-CCCCHHHHHhccC
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHA-PIKSLLDAVKAIK 437 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~-~~~~L~eaV~~vk 437 (617)
||.|+|+|..|..+|-.++. .|+ ...++++|.+-=...+...++.+. .+|-.+.. ...+. +.++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~-----~g~-----~~ev~l~D~~~~~~~g~a~dl~~~-~~~~~~~~i~~~d~-~~l~~-- 67 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLL-----RGL-----ASEIVLVDINKAKAEGEAMDLAHG-TPFVKPVRIYAGDY-ADCKG-- 67 (308)
T ss_pred EEEEECCCHHHHHHHHHHHH-----cCC-----CCEEEEEECCchhhhhHHHHHHcc-ccccCCeEEeeCCH-HHhCC--
Confidence 79999999999999987764 254 367999997410011100012211 12211100 01344 55665
Q ss_pred CcEEEeecCCCCCC--------------CHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccc--CcEEEeeCCCC
Q 007112 438 PTMLMGTSGVGKTF--------------TKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSK--GQAIFASGSPF 501 (617)
Q Consensus 438 PtvLIG~S~~~g~F--------------teevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~--GraifASGSPF 501 (617)
.|+.|=+.+.+..- =+++++.+.+++..-+|+-.+||. +....-+++.++ -+-+|++|.--
T Consensus 68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~---d~~~~~~~~~sg~p~~~viG~gt~L 144 (308)
T cd05292 68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPV---DVLTYVAYKLSGLPPNRVIGSGTVL 144 (308)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHeecccchh
Confidence 77777554443211 136777888889999999999996 555555555541 12377777544
No 219
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=71.52 E-value=8 Score=40.61 Aligned_cols=103 Identities=17% Similarity=0.146 Sum_probs=57.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCc-----hhchhhhcc-cCCCCCHHH
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ-----HFKKPWAHE-HAPIKSLLD 431 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~-----~~k~~fA~~-~~~~~~L~e 431 (617)
.||.|+|+|..|..+|..+..+ | .+++++|+..-...-+...+. ..+..+... .....++ +
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~-----G-------~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~ 69 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA-----G-------ADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-A 69 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----C-------CcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-h
Confidence 4799999999999999998763 5 368888874211000000010 000000000 0001233 4
Q ss_pred HHhccCCcEEEeecCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCCC
Q 007112 432 AVKAIKPTMLMGTSGVGKTFTKEVVEAMASF-NEKPVIFALSNPTSQ 477 (617)
Q Consensus 432 aV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPt~~ 477 (617)
+++ .+|++|=+.... ..+++++.+... .+..+|..+.|....
T Consensus 70 ~~~--~~D~vil~vk~~--~~~~~~~~l~~~~~~~~iii~~~nG~~~ 112 (341)
T PRK08229 70 ALA--TADLVLVTVKSA--ATADAAAALAGHARPGAVVVSFQNGVRN 112 (341)
T ss_pred hcc--CCCEEEEEecCc--chHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence 454 478777443322 358888888764 455678888887643
No 220
>PRK07411 hypothetical protein; Validated
Probab=71.52 E-value=4.1 Score=44.69 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=33.8
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 353 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 353 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
.+|++.||+++|+|.-|.-||+.|+.+ |+ ++|.++|.+
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~-----Gv------g~l~lvD~D 71 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAA-----GI------GRIGIVDFD 71 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 467889999999999999999999875 76 789999987
No 221
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=71.15 E-value=20 Score=39.27 Aligned_cols=100 Identities=19% Similarity=0.237 Sum_probs=66.5
Q ss_pred chhHHHHHHHHHHHHHh--------------------CCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCe
Q 007112 335 GTASVVLAGILSALKLV--------------------GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKK 394 (617)
Q Consensus 335 GTaaV~LAgll~Alr~~--------------------g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~ 394 (617)
-||-++++-+|.++|-. |.++.++|+.|+|+|+.|.-||+.|..+ | .+
T Consensus 120 ~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~F-----g-------~~ 187 (336)
T KOG0069|consen 120 DVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPF-----G-------CV 187 (336)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhc-----c-------ce
Confidence 57888888888888743 3468899999999999999999999763 2 12
Q ss_pred EEEEccCCcccCCcccC-CchhchhhhcccCCCCCHHHHHhccCCcEEEeecCC----CCCCCHHHHHHHH
Q 007112 395 IWLVDSKGLIVSSRKES-LQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGV----GKTFTKEVVEAMA 460 (617)
Q Consensus 395 i~lvD~~GLi~~~R~~~-L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~----~g~Fteevv~~Ma 460 (617)
|. +.+|... ....+..+|. .-++.|...+ .|+|+=..-- -++|+++.+..|.
T Consensus 188 i~--------y~~r~~~~~~~~~~~~~~----~~d~~~~~~~--sD~ivv~~pLt~~T~~liNk~~~~~mk 244 (336)
T KOG0069|consen 188 IL--------YHSRTQLPPEEAYEYYAE----FVDIEELLAN--SDVIVVNCPLTKETRHLINKKFIEKMK 244 (336)
T ss_pred ee--------eecccCCchhhHHHhccc----ccCHHHHHhh--CCEEEEecCCCHHHHHHhhHHHHHhcC
Confidence 33 3444211 2223334443 3467776765 7888744221 2689999999995
No 222
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=70.84 E-value=19 Score=44.71 Aligned_cols=115 Identities=15% Similarity=0.200 Sum_probs=60.4
Q ss_pred HHHHHHHHHhCC-------C--CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhc------------Ce---EEE
Q 007112 342 AGILSALKLVGG-------T--LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEAR------------KK---IWL 397 (617)
Q Consensus 342 Agll~Alr~~g~-------~--l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr------------~~---i~l 397 (617)
+.+.+|++..|. | +.--+|||.|+|..|.|-++++...-.+ -++.++-+ ++ +|.
T Consensus 179 ~~~~~a~~~~G~~i~~~g~p~gv~P~~vVi~G~G~Vg~gA~~i~~~lg~~--~v~~~~l~~l~~~~~~~~~~~~~~~~y~ 256 (1042)
T PLN02819 179 AAAKAAVISVGEEIASSGLPLGICPLVFVFTGSGNVSQGAQEIFKLLPHT--FVEPSKLPELKGISQNKISTKRVYQVYG 256 (1042)
T ss_pred HHHHHHHHhccceeeccCCCCCCCCeEEEEeCCchHHHHHHHHHhhcCCC--ccCHHHHHHHHHhhcCCccccccceeee
Confidence 345666655532 2 3358999999999999999988643111 02222211 11 221
Q ss_pred --EccCCcc-cCCcccCCchhchhhhcccCCCCCHH-HHHhccCCcEEEeec----CCCCCCCHH-HHHHHHc
Q 007112 398 --VDSKGLI-VSSRKESLQHFKKPWAHEHAPIKSLL-DAVKAIKPTMLMGTS----GVGKTFTKE-VVEAMAS 461 (617)
Q Consensus 398 --vD~~GLi-~~~R~~~L~~~k~~fA~~~~~~~~L~-eaV~~vkPtvLIG~S----~~~g~Ftee-vv~~Ma~ 461 (617)
+.+.-.+ +++. +.-=+.+..|+|+..=...+. +++.. .|+|||.- ..|.++|++ +++.|..
T Consensus 257 ~~~~~~~~~~~~~~-~~~f~~~~y~~~Pe~y~s~F~~~~~~~--advlIn~i~~~~~~P~lvt~~~~~~~mk~ 326 (1042)
T PLN02819 257 CVVTSQDMVEHKDP-SKQFDKADYYAHPEHYNPVFHEKIAPY--ASVIVNCMYWEKRFPRLLTTKQLQDLTRK 326 (1042)
T ss_pred eecChHHHhhccCC-ccccchhhhccCchhccchhHHHhHhh--CCEEEeeeecCCCCCceeCHHHHHHhhcC
Confidence 1111111 1111 000111233444322224454 67776 99999984 345679999 8888874
No 223
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=70.69 E-value=21 Score=39.54 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=52.0
Q ss_pred HHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhc--
Q 007112 344 ILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH-- 421 (617)
Q Consensus 344 ll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~-- 421 (617)
+..++.-....|++.|++++|-+.-.+++++.|.+. .|+.. ..+-+. +.++ +...+..+.+..
T Consensus 277 ~~~~l~~~~~~l~Gkrvai~g~~~~~~~la~~L~ee----lGm~~-------v~v~t~---~~~~-~~~~~~~~~l~~~~ 341 (427)
T PRK02842 277 ARKALEPYRELLRGKRVFFLPDSQLEIPLARFLSRE----CGMEL-------VEVGTP---YLNR-RFLAAELALLPDGV 341 (427)
T ss_pred HHHHHHHhhhhcCCcEEEEECCchhHHHHHHHHHHh----CCCEE-------EEeCCC---CCCH-HHHHHHHHhccCCC
Confidence 455566666778899999999998999999998764 37632 111111 0111 101111111111
Q ss_pred ---ccCCCCCHHHHHhccCCcEEEeec
Q 007112 422 ---EHAPIKSLLDAVKAIKPTMLMGTS 445 (617)
Q Consensus 422 ---~~~~~~~L~eaV~~vkPtvLIG~S 445 (617)
+..+...+.+.|+..|||.|||-|
T Consensus 342 ~v~~~~D~~~l~~~i~~~~pDllig~~ 368 (427)
T PRK02842 342 RIVEGQDVERQLDRIRALRPDLVVCGL 368 (427)
T ss_pred EEEECCCHHHHHHHHHHcCCCEEEccC
Confidence 112223568899999999999976
No 224
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=70.46 E-value=7.4 Score=34.75 Aligned_cols=88 Identities=15% Similarity=0.182 Sum_probs=50.9
Q ss_pred CcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEe
Q 007112 364 GAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMG 443 (617)
Q Consensus 364 GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG 443 (617)
|.|..|.+++++|...-.. .+ -+=..++|+++++... ............++.+.++..++|++|=
T Consensus 1 G~G~VG~~l~~~l~~~~~~-~~------~~v~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~dvvVE 65 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER-ID------LEVVGVADRSMLISKD--------WAASFPDEAFTTDLEELIDDPDIDVVVE 65 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH-CE------EEEEEEEESSEEEETT--------HHHHHTHSCEESSHHHHHTHTT-SEEEE
T ss_pred CCCHHHHHHHHHHHhCccc-CC------EEEEEEEECCchhhhh--------hhhhcccccccCCHHHHhcCcCCCEEEE
Confidence 8899999999999764211 01 1346778887444433 1112222234578999999888999999
Q ss_pred ecCCCCCCCHHHHHHHHcCCCCcEEE
Q 007112 444 TSGVGKTFTKEVVEAMASFNEKPVIF 469 (617)
Q Consensus 444 ~S~~~g~Fteevv~~Ma~~~erPIIF 469 (617)
+++ ....++-+.+.+. +...+|-
T Consensus 66 ~t~-~~~~~~~~~~~L~--~G~~VVt 88 (117)
T PF03447_consen 66 CTS-SEAVAEYYEKALE--RGKHVVT 88 (117)
T ss_dssp -SS-CHHHHHHHHHHHH--TTCEEEE
T ss_pred CCC-chHHHHHHHHHHH--CCCeEEE
Confidence 954 4355555555554 3445554
No 225
>PLN02527 aspartate carbamoyltransferase
Probab=70.35 E-value=1.5e+02 Score=31.90 Aligned_cols=130 Identities=15% Similarity=0.205 Sum_probs=77.4
Q ss_pred HHhcCCCeeeeeecCCCCcHHHHHHHHcCCCceee--cCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHH
Q 007112 296 KQNYGEKVLIQFEDFANHNAFELLSKYSSSHLVFN--DDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIA 373 (617)
Q Consensus 296 ~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FN--DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA 373 (617)
-.+| .++++ .-.+...... -+.+| .++||.| |+...==.=+||=++.-.+..| ++++.||+++|.+.=+ -++
T Consensus 93 ls~y-~D~iv-iR~~~~~~~~-~~a~~-~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g~kva~vGD~~~~-rv~ 166 (306)
T PLN02527 93 VEGY-SDIIV-LRHFESGAAR-RAAAT-AEIPVINAGDGPGQHPTQALLDVYTIQREIG-RLDGIKVGLVGDLANG-RTV 166 (306)
T ss_pred HHHh-CcEEE-EECCChhHHH-HHHHh-CCCCEEECCCCCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCCCC-hhH
Confidence 3456 44333 4444444433 34455 4689999 4343444456777777766666 5999999999988532 245
Q ss_pred HHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhccc-C---CCCCHHHHHhccCCcEEEeecCC
Q 007112 374 ELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH-A---PIKSLLDAVKAIKPTMLMGTSGV 447 (617)
Q Consensus 374 ~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~-~---~~~~L~eaV~~vkPtvLIG~S~~ 447 (617)
+-++.++.+..|+ .|.++-.+|+- +++....++++. . ...++.|+|+. .||+.-.+.+
T Consensus 167 ~Sl~~~~~~~~g~-------~v~~~~P~~~~-------~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvyt~~~q 228 (306)
T PLN02527 167 RSLAYLLAKYEDV-------KIYFVAPDVVK-------MKDDIKDYLTSKGVEWEESSDLMEVASK--CDVLYQTRIQ 228 (306)
T ss_pred HHHHHHHHhcCCC-------EEEEECCCccC-------CCHHHHHHHHHcCCEEEEEcCHHHHhCC--CCEEEECCcc
Confidence 5555554432253 58888888761 112222233321 1 13689999998 9999987655
No 226
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=70.28 E-value=1.1e+02 Score=33.20 Aligned_cols=140 Identities=18% Similarity=0.145 Sum_probs=84.3
Q ss_pred HHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC--------CCCCCHHHHhccccCcEEEee-CC
Q 007112 429 LLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTS--------QSECTAEEAYTWSKGQAIFAS-GS 499 (617)
Q Consensus 429 L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~--------~aEct~edA~~wT~GraifAS-GS 499 (617)
+.++=+.+||+++|+.++.+ +==.++-+.+ ++-||=|.+=.-||-. ..+.|.+++++-+ ..+..+ |-
T Consensus 101 f~~l~~~~~~~aIlASNTSs-l~it~ia~~~-~rper~iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~--~~~~~~igK 176 (307)
T COG1250 101 FAELEALAKPDAILASNTSS-LSITELAEAL-KRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERV--VEFAKKIGK 176 (307)
T ss_pred HHHHHhhcCCCcEEeeccCC-CCHHHHHHHh-CCchhEEEEeccCCCCcceeEEEecCCCCCHHHHHHH--HHHHHHcCC
Confidence 34444557799999988864 2222333333 5556668888999973 4577877776532 111111 31
Q ss_pred CCCcceeCCeeeccCCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHHHhccCcccCCCCCccCCCCChhhhHHHHHH
Q 007112 500 PFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQVTQEHFDKGLIYPPFTNIRKISAHIAA 579 (617)
Q Consensus 500 PF~pv~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~ 579 (617)
.||. ..+.||-.=|-..+|.+.-+..+..---.|.+.+.++.+.-+.+ . .-|+.-.+-+-..+..
T Consensus 177 --~~vv---~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~------p----mGpf~l~D~~GlD~~~ 241 (307)
T COG1250 177 --TPVV---VKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGL------P----MGPFELADLIGLDVML 241 (307)
T ss_pred --CCEe---ecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCC------C----ccHHHHHHHHhHHHHH
Confidence 1121 35678888898888888888877776667888777776653322 1 2244444455555666
Q ss_pred HHHHHHHH
Q 007112 580 KVAAKAYD 587 (617)
Q Consensus 580 aVa~~A~~ 587 (617)
.|+++.++
T Consensus 242 ~i~~~~~~ 249 (307)
T COG1250 242 HIMKVLNE 249 (307)
T ss_pred HHHHHHHH
Confidence 66655554
No 227
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=70.17 E-value=9.4 Score=31.83 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=29.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCccc
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIV 405 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~ 405 (617)
|++|+|+|..|+-+|..+... | +++.++++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-----g-------~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-----G-------KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T-------SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-----C-------cEEEEEeccchhh
Confidence 799999999999999988542 4 6899999887766
No 228
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=70.14 E-value=9.3 Score=43.22 Aligned_cols=96 Identities=17% Similarity=0.191 Sum_probs=63.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc---cCCCCCHHHHHhc
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE---HAPIKSLLDAVKA 435 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~---~~~~~~L~eaV~~ 435 (617)
+|-|+|.|.-|.++|..|... |. +++++|++ .++ .++....-.+. .....++.|+++.
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~-----G~-------~V~v~dr~----~~~---~~~l~~~~~~~g~~i~~~~s~~e~v~~ 63 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASR-----GF-------KISVYNRT----YEK---TEEFVKKAKEGNTRVKGYHTLEELVNS 63 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHC-----CC-------eEEEEeCC----HHH---HHHHHHhhhhcCCcceecCCHHHHHhc
Confidence 689999999999999999753 63 58888873 222 22221110000 1134689999986
Q ss_pred c-CCcEEEeecCCCCCCCHHHHHHHHc-CCCCcEEEecCCC
Q 007112 436 I-KPTMLMGTSGVGKTFTKEVVEAMAS-FNEKPVIFALSNP 474 (617)
Q Consensus 436 v-kPtvLIG~S~~~g~Fteevv~~Ma~-~~erPIIFaLSNP 474 (617)
. +|+++| +.-.++..+++|++.+.. ..+..||.=+||=
T Consensus 64 l~~~d~Ii-l~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~ 103 (470)
T PTZ00142 64 LKKPRKVI-LLIKAGEAVDETIDNLLPLLEKGDIIIDGGNE 103 (470)
T ss_pred CCCCCEEE-EEeCChHHHHHHHHHHHhhCCCCCEEEECCCC
Confidence 5 588555 344455678888887764 4567899989984
No 229
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=69.87 E-value=32 Score=36.79 Aligned_cols=104 Identities=15% Similarity=0.112 Sum_probs=65.9
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhccc---CCCCCHHHH
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH---APIKSLLDA 432 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~---~~~~~L~ea 432 (617)
.-.++.|+|+|.-|-.-++.+... . . -++|+++|+. .++ ...+...+.+.. ....+..|+
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~--~--~------~~~v~V~~r~----~~~---~~~~~~~~~~~g~~v~~~~~~~ea 189 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRV--F--D------LEEVSVYCRT----PST---REKFALRASDYEVPVRAATDPREA 189 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc--C--C------CCEEEEECCC----HHH---HHHHHHHHHhhCCcEEEeCCHHHH
Confidence 358899999999876655554331 1 2 3789988874 322 233333332211 224789999
Q ss_pred HhccCCcEEEeec-CCCCCCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHHH
Q 007112 433 VKAIKPTMLMGTS-GVGKTFTKEVVEAMASFNEKPVIFALSNPT-SQSECTAEE 484 (617)
Q Consensus 433 V~~vkPtvLIG~S-~~~g~Fteevv~~Ma~~~erPIIFaLSNPt-~~aEct~ed 484 (617)
++. .|++|-++ +....|..+.++ +..-|-++.-.+ .+.|+.++-
T Consensus 190 v~~--aDiVitaT~s~~P~~~~~~l~------~g~~v~~vGs~~p~~~Eld~~~ 235 (325)
T TIGR02371 190 VEG--CDILVTTTPSRKPVVKADWVS------EGTHINAIGADAPGKQELDPEI 235 (325)
T ss_pred hcc--CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCcccccCCHHH
Confidence 986 89998654 333478887774 555688887544 368999864
No 230
>PRK07340 ornithine cyclodeaminase; Validated
Probab=69.84 E-value=37 Score=35.99 Aligned_cols=104 Identities=11% Similarity=0.141 Sum_probs=63.9
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCC--CCCHHHH
Q 007112 355 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAP--IKSLLDA 432 (617)
Q Consensus 355 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~--~~~L~ea 432 (617)
....+++++|+|..|...++.+... .+. ++|+++|+. .++ ...+...+.....+ ..++.|+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~a~~~~~~~~~~~~~~~~~a 185 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAG----LPV------RRVWVRGRT----AAS---AAAFCAHARALGPTAEPLDGEAI 185 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHh----CCC------CEEEEEcCC----HHH---HHHHHHHHHhcCCeeEECCHHHH
Confidence 3568999999999998888877653 243 578888875 222 22222223211111 3579999
Q ss_pred HhccCCcEEEeecCCC-CCCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHHH
Q 007112 433 VKAIKPTMLMGTSGVG-KTFTKEVVEAMASFNEKPVIFALSNPT-SQSECTAEE 484 (617)
Q Consensus 433 V~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erPIIFaLSNPt-~~aEct~ed 484 (617)
+++ .|++|-++... .+|..+ + .+.--|-++.-.+ .+.|+.+|-
T Consensus 186 v~~--aDiVitaT~s~~Pl~~~~-~------~~g~hi~~iGs~~p~~~El~~~~ 230 (304)
T PRK07340 186 PEA--VDLVVTATTSRTPVYPEA-A------RAGRLVVAVGAFTPDMAELAPRT 230 (304)
T ss_pred hhc--CCEEEEccCCCCceeCcc-C------CCCCEEEecCCCCCCcccCCHHH
Confidence 985 99999775543 355542 2 2444666665422 468888763
No 231
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=69.81 E-value=22 Score=38.23 Aligned_cols=83 Identities=18% Similarity=0.298 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchh
Q 007112 337 ASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 415 (617)
Q Consensus 337 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~ 415 (617)
.-+|-.|++.=++-.|.+++++++|++|.+. .|.-+|.||.. .|. .+.+|.++
T Consensus 138 ~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~-----~~a-------tVtv~hs~-------------- 191 (297)
T PRK14186 138 RSCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLA-----ANA-------TVTIAHSR-------------- 191 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 4567788888889999999999999999764 68888887753 243 35555432
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007112 416 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 457 (617)
Q Consensus 416 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 457 (617)
..+|.+.+++ +|++|-..|.++.|+.++|+
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (297)
T PRK14186 192 ----------TQDLASITRE--ADILVAAAGRPNLIGAEMVK 221 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1357788887 99999999999999999997
No 232
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=69.78 E-value=9.4 Score=43.66 Aligned_cols=38 Identities=29% Similarity=0.471 Sum_probs=27.9
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 352 GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 352 g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+.++++.++||+|||.||-+|+..+.+ .| + +++++|+.
T Consensus 374 ~~~~~~k~vlIlGaGGagrAia~~L~~-----~G-----~--~V~i~nR~ 411 (529)
T PLN02520 374 GSPLAGKLFVVIGAGGAGKALAYGAKE-----KG-----A--RVVIANRT 411 (529)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEcCC
Confidence 456888999999999777666666653 35 2 68888874
No 233
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=69.66 E-value=35 Score=35.44 Aligned_cols=32 Identities=41% Similarity=0.745 Sum_probs=26.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
.+|.|+|+|..|.+||..++.+ | .+++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-----G-------~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-----G-------MDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCC
Confidence 5799999999999999998753 5 368888864
No 234
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=69.56 E-value=9.2 Score=40.64 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=54.7
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhc---ccCCCCCHHHHH
Q 007112 357 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH---EHAPIKSLLDAV 433 (617)
Q Consensus 357 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~---~~~~~~~L~eaV 433 (617)
-.++.|+|+|.-|..-++.+... .++ ++|+++|+. ..+ ...+...+.+ +.....++++++
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~----~~i------~~v~v~~r~----~~~---~~~~~~~~~~~~~~v~~~~~~~~av 190 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAV----RPI------KEVRVYSRS----PER---AEAFAARLRDLGVPVVAVDSAEEAV 190 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHH----S--------SEEEEE-SS----HHH---HHHHHHHHHCCCTCEEEESSHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHh----CCc------eEEEEEccC----hhH---HHHHHHhhccccccceeccchhhhc
Confidence 36999999999888877766654 233 789988875 222 3333333333 112246899999
Q ss_pred hccCCcEEEeecCCCC---CCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHHH
Q 007112 434 KAIKPTMLMGTSGVGK---TFTKEVVEAMASFNEKPVIFALSNPT-SQSECTAEE 484 (617)
Q Consensus 434 ~~vkPtvLIG~S~~~g---~Fteevv~~Ma~~~erPIIFaLSNPt-~~aEct~ed 484 (617)
+. .|+++.++.... +|+.+.++ +.-.|-++.--+ .+.|+.++-
T Consensus 191 ~~--aDii~taT~s~~~~P~~~~~~l~------~g~hi~~iGs~~~~~~El~~~~ 237 (313)
T PF02423_consen 191 RG--ADIIVTATPSTTPAPVFDAEWLK------PGTHINAIGSYTPGMRELDDEL 237 (313)
T ss_dssp TT--SSEEEE----SSEEESB-GGGS-------TT-EEEE-S-SSTTBESB-HHH
T ss_pred cc--CCEEEEccCCCCCCccccHHHcC------CCcEEEEecCCCCchhhcCHHH
Confidence 98 899998755443 57777665 344566665422 245776643
No 235
>PLN02602 lactate dehydrogenase
Probab=69.52 E-value=16 Score=39.79 Aligned_cols=124 Identities=19% Similarity=0.306 Sum_probs=77.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCC---CCHHHHHh
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPI---KSLLDAVK 434 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~---~~L~eaV~ 434 (617)
.||.|+|||..|..+|-.|+. .|+ ...|.|+|.+-=..++-.-+|.+.. +|-.. ..+ .+.++ ++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~-----~~l-----~~el~LiDi~~~~~~g~a~DL~~~~-~~~~~-~~i~~~~dy~~-~~ 104 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT-----QDL-----ADELALVDVNPDKLRGEMLDLQHAA-AFLPR-TKILASTDYAV-TA 104 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----CCEEEEEeCCCchhhHHHHHHHhhh-hcCCC-CEEEeCCCHHH-hC
Confidence 499999999999999998764 255 3579999974211111111233322 22211 111 34544 66
Q ss_pred ccCCcEEEeecCCC---CCCCH------------HHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccc--CcEEEee
Q 007112 435 AIKPTMLMGTSGVG---KTFTK------------EVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSK--GQAIFAS 497 (617)
Q Consensus 435 ~vkPtvLIG~S~~~---g~Fte------------evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~--GraifAS 497 (617)
. .|++|=+.+.+ | -|. ++++.|.+++..-+|+-.|||. .....-++++++ =+-+|++
T Consensus 105 d--aDiVVitAG~~~k~g-~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPv---dv~t~~~~k~sg~p~~rviG~ 178 (350)
T PLN02602 105 G--SDLCIVTAGARQIPG-ESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPV---DVLTYVAWKLSGFPANRVIGS 178 (350)
T ss_pred C--CCEEEECCCCCCCcC-CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCch---HHHHHHHHHHhCCCHHHEEee
Confidence 6 89988665553 3 243 7788888999999999999997 344445566552 1336777
Q ss_pred CCC
Q 007112 498 GSP 500 (617)
Q Consensus 498 GSP 500 (617)
|.-
T Consensus 179 gt~ 181 (350)
T PLN02602 179 GTN 181 (350)
T ss_pred cch
Confidence 643
No 236
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=69.34 E-value=47 Score=35.74 Aligned_cols=157 Identities=18% Similarity=0.223 Sum_probs=89.3
Q ss_pred chhHHHHHHHHHHHHH---------------------hCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcC
Q 007112 335 GTASVVLAGILSALKL---------------------VGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARK 393 (617)
Q Consensus 335 GTaaV~LAgll~Alr~---------------------~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~ 393 (617)
.+|=-+++.+|+..|- .|..|.++++.|+|.|..|..||+.+..++ |+
T Consensus 102 ~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~va~~l~~~f----gm------- 170 (323)
T PRK15409 102 TVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGF----NM------- 170 (323)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHHHHHHHhcC----CC-------
Confidence 3555566667766652 245689999999999999999999875232 54
Q ss_pred eEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEee----cCCCCCCCHHHHHHHHcCCCCcEEE
Q 007112 394 KIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGT----SGVGKTFTKEVVEAMASFNEKPVIF 469 (617)
Q Consensus 394 ~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~----S~~~g~Fteevv~~Ma~~~erPIIF 469 (617)
++...|+.. . .+ ....+ .....+|.|+++. .|+++=. ...-|.|+++.++.|. +.-++.
T Consensus 171 ~V~~~~~~~----~-~~----~~~~~---~~~~~~l~ell~~--sDvv~lh~plt~~T~~li~~~~l~~mk---~ga~lI 233 (323)
T PRK15409 171 PILYNARRH----H-KE----AEERF---NARYCDLDTLLQE--SDFVCIILPLTDETHHLFGAEQFAKMK---SSAIFI 233 (323)
T ss_pred EEEEECCCC----c-hh----hHHhc---CcEecCHHHHHHh--CCEEEEeCCCChHHhhccCHHHHhcCC---CCeEEE
Confidence 355566531 0 00 00011 1123479999987 8887632 1123789999999995 455666
Q ss_pred ecCCCCCCCCCCHHHHhc-c-ccCcEEEeeCCCCC--cceeCCeeeccCCCCcccccchhh
Q 007112 470 ALSNPTSQSECTAEEAYT-W-SKGQAIFASGSPFD--PVEYNGKVFVPGQGNNAYIFPGLG 526 (617)
Q Consensus 470 aLSNPt~~aEct~edA~~-w-T~GraifASGSPF~--pv~~~Gk~~~p~Q~NN~yiFPGig 526 (617)
=.|. .++--|+|+- + .+|+.-.|.=-=|+ |..-+. . -=...|+.+-|=+|
T Consensus 234 N~aR----G~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~-p--L~~~~nvilTPHia 287 (323)
T PRK15409 234 NAGR----GPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDS-P--LLSLPNVVAVPHIG 287 (323)
T ss_pred ECCC----ccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCc-h--hhcCCCEEEcCcCC
Confidence 5443 5555554442 1 45665433221111 110010 0 01345888888776
No 237
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=69.10 E-value=1.2e+02 Score=32.03 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=24.1
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
.+++++++|+|..|...+.++...+ |- .+++.+|+.
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~----g~------~~vi~~~~~ 198 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIY----PE------SKLVVFGKH 198 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhc----CC------CcEEEEeCc
Confidence 5789999999987766655554321 31 468877763
No 238
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=69.05 E-value=6.4 Score=40.54 Aligned_cols=32 Identities=28% Similarity=0.451 Sum_probs=28.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
||+++|+|..|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~-----Gv------g~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-----GF------GQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999764 76 789999998
No 239
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=69.04 E-value=12 Score=40.20 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=19.6
Q ss_pred CceEEEeCcChHHHHHHHHHHH
Q 007112 357 DQTFLFLGAGEAGTGIAELIAL 378 (617)
Q Consensus 357 d~riv~~GAGsAg~GIA~li~~ 378 (617)
..||.|+|||+-|+.+|..+..
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~ 28 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICAR 28 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHH
Confidence 3789999999999999998864
No 240
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=68.63 E-value=6 Score=45.51 Aligned_cols=165 Identities=21% Similarity=0.278 Sum_probs=82.0
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcc-cCCchhchhhhcccCCCCCHHHHH
Q 007112 355 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRK-ESLQHFKKPWAHEHAPIKSLLDAV 433 (617)
Q Consensus 355 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~-~~L~~~k~~fA~~~~~~~~L~eaV 433 (617)
++..|.+++|||+-|++||+-|+.. |+ ++|.+||.--.-+.+-- .+|-.|.---++..+...+-...+
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~W-----Gv------RhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rL 406 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRL 406 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhh-----cc------ceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHH
Confidence 3567999999999999999999887 54 78999997543333210 123222211111111122334445
Q ss_pred hccCCcEE-----EeecCCCCCCCHHHHHH-------HHc-CCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCC
Q 007112 434 KAIKPTML-----MGTSGVGKTFTKEVVEA-------MAS-FNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSP 500 (617)
Q Consensus 434 ~~vkPtvL-----IG~S~~~g~Fteevv~~-------Ma~-~~erPIIFaLSNPt~~aEct~edA~~wT~GraifASGSP 500 (617)
|.+-|.+- +-.-=.|--..++-++. +.+ ..++-+||=|.--- -+---|.- +....-+.++-+.-=
T Consensus 407 k~IfP~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsR-ESRWLPtl-l~a~~~KivINaALG 484 (669)
T KOG2337|consen 407 KEIFPSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSR-ESRWLPTL-LAAAKNKIVINAALG 484 (669)
T ss_pred HHhCccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccc-hhhhhHHH-HHhhhcceEeeeecc
Confidence 55555432 11111121233322221 111 23677999875421 11112211 111233444433334
Q ss_pred CCccee--CCeee----ccCCCCcccccchhhHHHHHh
Q 007112 501 FDPVEY--NGKVF----VPGQGNNAYIFPGLGLGLIIS 532 (617)
Q Consensus 501 F~pv~~--~Gk~~----~p~Q~NN~yiFPGiglG~l~s 532 (617)
|+...+ .|-.. .-+|.-+.-..||==||+..+
T Consensus 485 FDsylVMRHG~~~~~~~~d~q~s~~~~i~~~qLGCYFC 522 (669)
T KOG2337|consen 485 FDSYLVMRHGTGRKEASDDGQSSDLKCINGDQLGCYFC 522 (669)
T ss_pred cceeEEEecCCCCcccccccccccccccCcccceeEeE
Confidence 776643 33221 225666666777777777543
No 241
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=68.15 E-value=6.6 Score=42.31 Aligned_cols=68 Identities=24% Similarity=0.258 Sum_probs=43.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc----cC-CCCCHHHHH
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE----HA-PIKSLLDAV 433 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~----~~-~~~~L~eaV 433 (617)
||+++|+|.-|.-||+.|+.+ |+ ++|.++|.+ .|..+ +|..+- -|-.+ .. ....+.+.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a-----GV------g~ItlvD~D-~Ve~s---NL~RQ~-L~~~~D~~iGk~Ka~aaa~~L 64 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDSG-KVSYS---NPVRQS-LFTFEDCKGGKPKAEAAAERL 64 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC-Eeccc---cCCccc-ccccchhhcCccHHHHHHHHH
Confidence 689999999999999999875 76 789999986 22222 233211 11111 11 113567777
Q ss_pred hccCCcEEE
Q 007112 434 KAIKPTMLM 442 (617)
Q Consensus 434 ~~vkPtvLI 442 (617)
+.+.|++=|
T Consensus 65 ~~iNP~v~v 73 (307)
T cd01486 65 KEIFPSIDA 73 (307)
T ss_pred HHHCCCcEE
Confidence 777777744
No 242
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=67.85 E-value=5 Score=42.62 Aligned_cols=38 Identities=32% Similarity=0.411 Sum_probs=33.9
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 353 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 353 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
++|++-+|+++|+|..|+-||+.|+.+ |+ ++|.++|.+
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLala-----GV------g~itI~D~d 52 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILA-----GV------KSVTLHDTK 52 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 357889999999999999999999875 76 789999998
No 243
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=67.61 E-value=15 Score=41.54 Aligned_cols=95 Identities=14% Similarity=0.173 Sum_probs=61.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc--cCCCCCHHHHHhcc
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE--HAPIKSLLDAVKAI 436 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~--~~~~~~L~eaV~~v 436 (617)
.|-|+|.|..|..+|..|+.. |. ++++.|+. ..+ .+..++.+... .....++.|+++.+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~v~drt----~~~---~~~l~~~~~~g~~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH-----GF-------TVSVYNRT----PEK---TDEFLAEHAKGKKIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc-----CC-------eEEEEeCC----HHH---HHHHHhhccCCCCceecCCHHHHHhhc
Confidence 377999999999999999653 53 57777764 221 22222221111 12345788888664
Q ss_pred -CCcEEEeecCCCCCCCHHHHHHHHcC-CCCcEEEecCC
Q 007112 437 -KPTMLMGTSGVGKTFTKEVVEAMASF-NEKPVIFALSN 473 (617)
Q Consensus 437 -kPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSN 473 (617)
+|+++| ++-.++..+++|++.+..+ .+.-||.=.||
T Consensus 62 ~~~dvIi-l~v~~~~~v~~Vi~~l~~~L~~g~iIID~gn 99 (467)
T TIGR00873 62 ERPRKIM-LMVKAGAPVDAVINQLLPLLEKGDIIIDGGN 99 (467)
T ss_pred CCCCEEE-EECCCcHHHHHHHHHHHhhCCCCCEEEECCC
Confidence 588666 4444556788898887654 56789999988
No 244
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=67.38 E-value=8.1 Score=37.78 Aligned_cols=97 Identities=18% Similarity=0.258 Sum_probs=50.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhccc--------------C
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH--------------A 424 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~--------------~ 424 (617)
+|.|+|||..|.|||-+++.+ | -++.++|.+---...-.+.+......+.+.. .
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-----G-------~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~ 68 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-----G-------YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS 68 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-----T-------SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE
T ss_pred CEEEEcCCHHHHHHHHHHHhC-----C-------CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc
Confidence 688999999999999999864 6 4688888852111000000111000111100 0
Q ss_pred CCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEe
Q 007112 425 PIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFA 470 (617)
Q Consensus 425 ~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 470 (617)
-..+|.+++ . .|..|=.-.-.--..+++.+.+.+.+..=.||+
T Consensus 69 ~~~dl~~~~-~--adlViEai~E~l~~K~~~~~~l~~~~~~~~ila 111 (180)
T PF02737_consen 69 FTTDLEEAV-D--ADLVIEAIPEDLELKQELFAELDEICPPDTILA 111 (180)
T ss_dssp EESSGGGGC-T--ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEE
T ss_pred cccCHHHHh-h--hheehhhccccHHHHHHHHHHHHHHhCCCceEE
Confidence 113566655 2 677776544333456778888877765444443
No 245
>PRK13938 phosphoheptose isomerase; Provisional
Probab=67.20 E-value=20 Score=36.02 Aligned_cols=104 Identities=15% Similarity=0.120 Sum_probs=53.1
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHh-hcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHh
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEE-ARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVK 434 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~ee-Ar~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~ 434 (617)
++.||.|+|.|..| -+|..+...|.. +++.+- +-..+-++......+.- . +-..+-..|++. +. ..
T Consensus 44 ~g~rI~i~G~G~S~-~~A~~fa~~L~~--~~~~~r~~lg~~~l~~~~~~~~a~-~-nd~~~~~~~~~~------~~--~~ 110 (196)
T PRK13938 44 AGARVFMCGNGGSA-ADAQHFAAELTG--HLIFDRPPLGAEALHANSSHLTAV-A-NDYDYDTVFARA------LE--GS 110 (196)
T ss_pred CCCEEEEEeCcHHH-HHHHHHHHHcCC--CccCCcCccceEEEeCChHHHHHh-h-ccccHHHHHHHH------HH--hc
Confidence 67999999999987 577777766542 111100 00112222221111100 0 001122233322 22 22
Q ss_pred ccCCcEEEeecCCCCCCCHHHHHHHH--cCCCCcEEEecCCC
Q 007112 435 AIKPTMLMGTSGVGKTFTKEVVEAMA--SFNEKPVIFALSNP 474 (617)
Q Consensus 435 ~vkPtvLIG~S~~~g~Fteevv~~Ma--~~~erPIIFaLSNP 474 (617)
.-+-|++|++|..|. |+++++.+. +...-|+|.=-+||
T Consensus 111 ~~~~DllI~iS~SG~--t~~vi~a~~~Ak~~G~~vI~iT~~~ 150 (196)
T PRK13938 111 ARPGDTLFAISTSGN--SMSVLRAAKTARELGVTVVAMTGES 150 (196)
T ss_pred CCCCCEEEEEcCCCC--CHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 235799999999885 999999874 33444554433333
No 246
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=67.18 E-value=1.2e+02 Score=33.68 Aligned_cols=194 Identities=15% Similarity=0.180 Sum_probs=114.0
Q ss_pred cCCCceeecCc---cchhHHHHHHHHHHHHH------------------hCCCCCCceEEEeCcChHHHHHHHHHHHHHH
Q 007112 323 SSSHLVFNDDI---QGTASVVLAGILSALKL------------------VGGTLADQTFLFLGAGEAGTGIAELIALEMS 381 (617)
Q Consensus 323 r~~~~~FNDDi---QGTaaV~LAgll~Alr~------------------~g~~l~d~riv~~GAGsAg~GIA~li~~~~~ 381 (617)
+..++++|--- +.+|=-+++.+|+..|- .|..|.+.++.|+|.|..|..+|+.+...
T Consensus 96 ~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~f-- 173 (409)
T PRK11790 96 KRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVLAESL-- 173 (409)
T ss_pred hCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHHHHHHHHHHC--
Confidence 35777777432 33555678888887763 24568999999999999999999988642
Q ss_pred hccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeecC----CCCCCCHHHHH
Q 007112 382 KQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSG----VGKTFTKEVVE 457 (617)
Q Consensus 382 ~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~----~~g~Fteevv~ 457 (617)
|+ +++.+|+.. + .... .+ ....+|.|+++. .|+++=.-- .-++|+++.+.
T Consensus 174 ---Gm-------~V~~~d~~~-----~-~~~~-----~~---~~~~~l~ell~~--sDiVslh~Plt~~T~~li~~~~l~ 227 (409)
T PRK11790 174 ---GM-------RVYFYDIED-----K-LPLG-----NA---RQVGSLEELLAQ--SDVVSLHVPETPSTKNMIGAEELA 227 (409)
T ss_pred ---CC-------EEEEECCCc-----c-cccC-----Cc---eecCCHHHHHhh--CCEEEEcCCCChHHhhccCHHHHh
Confidence 64 577888631 1 0010 01 123579999987 888763311 22689999999
Q ss_pred HHHcCCCCcEEEecCCCCCCCCCCHHHHhc--cccCcEEEeeCCC-C--CcceeCCeee-ccCCCCcccccchhhHHHHH
Q 007112 458 AMASFNEKPVIFALSNPTSQSECTAEEAYT--WSKGQAIFASGSP-F--DPVEYNGKVF-VPGQGNNAYIFPGLGLGLII 531 (617)
Q Consensus 458 ~Ma~~~erPIIFaLSNPt~~aEct~edA~~--wT~GraifASGSP-F--~pv~~~Gk~~-~p~Q~NN~yiFPGiglG~l~ 531 (617)
.|. +.-++.-.|. .++-=|+|+. ...|+ |.+-|.- | +|..-+.... .--+..|+++-|=+|-...-
T Consensus 228 ~mk---~ga~lIN~aR----G~~vde~aL~~aL~~g~-i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~e 299 (409)
T PRK11790 228 LMK---PGAILINASR----GTVVDIDALADALKSGH-LAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQE 299 (409)
T ss_pred cCC---CCeEEEECCC----CcccCHHHHHHHHHcCC-ceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHH
Confidence 996 4556665554 4444444431 13566 4433321 2 2221110000 01235689999988743222
Q ss_pred hCCcccCHHHHHHHHHHHHhccCccc
Q 007112 532 SGAIRVRDEMLLAASEALAAQVTQEH 557 (617)
Q Consensus 532 s~a~~Itd~M~laAA~aLA~~v~~~~ 557 (617)
-...|...+++.+......+.
T Consensus 300 -----a~~~~~~~~~~nl~~~~~~~~ 320 (409)
T PRK11790 300 -----AQENIGLEVAGKLVKYSDNGS 320 (409)
T ss_pred -----HHHHHHHHHHHHHHHHHcCCC
Confidence 234455666676666654433
No 247
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=66.74 E-value=8.1 Score=41.66 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=27.8
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+..||||+|+|.||+..|+.|.+. |. ..+|.++|..
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~-----~~-----~~~I~li~~e 37 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQ-----GF-----TGELHLFSDE 37 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhh-----CC-----CCCEEEeCCC
Confidence 567999999999999999998753 32 2367777764
No 248
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=66.63 E-value=7.2 Score=41.57 Aligned_cols=32 Identities=28% Similarity=0.502 Sum_probs=28.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
||+++|+|.-|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~-----Gv------g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-----GF------RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999874 76 699999987
No 249
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=66.55 E-value=6.7 Score=37.31 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=20.5
Q ss_pred EEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 361 LFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 361 v~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+|+|||.||+..|-.|.+ .|+ +.+.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~-----~g~------~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE-----RGI------DPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHH-----TT---------EEEEESS
T ss_pred CEECcCHHHHHHHHHHHh-----CCC------CcEEEEeCC
Confidence 689999999999977754 365 348889987
No 250
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.43 E-value=25 Score=37.60 Aligned_cols=89 Identities=20% Similarity=0.330 Sum_probs=66.5
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCc
Q 007112 335 GTASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 413 (617)
Q Consensus 335 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~ 413 (617)
+-.-+|-.|++.=++-.|.+|+++++|++|-+. .|.-+|.||.. .|... ...+.+|.++
T Consensus 131 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~~---~AtVtvchs~------------ 190 (287)
T PRK14181 131 GFIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQ-----KHPDT---NATVTLLHSQ------------ 190 (287)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHh-----CcCCC---CCEEEEeCCC------------
Confidence 345678888888899999999999999999764 67777777753 22110 1234444332
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007112 414 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 457 (617)
Q Consensus 414 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 457 (617)
.++|.+.+++ +|++|-..|.++.++.|+|+
T Consensus 191 ------------T~~l~~~~~~--ADIvV~AvG~p~~i~~~~ik 220 (287)
T PRK14181 191 ------------SENLTEILKT--ADIIIAAIGVPLFIKEEMIA 220 (287)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 2358888887 99999999999999999996
No 251
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=66.25 E-value=33 Score=37.35 Aligned_cols=121 Identities=15% Similarity=0.170 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhh
Q 007112 340 VLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPW 419 (617)
Q Consensus 340 ~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~f 419 (617)
+.|+.++|=.+..++- -++.|+|+|.-+- ..++++....++ .+|++.|++ . +....+...+
T Consensus 115 aAasavAa~~LA~~da--~~laiIGaG~qA~----~ql~a~~~v~~~------~~I~i~~r~----~---~~~e~~a~~l 175 (330)
T COG2423 115 AAASAVAAKYLARKDA--STLAIIGAGAQAR----TQLEALKAVRDI------REIRVYSRD----P---EAAEAFAARL 175 (330)
T ss_pred HHHHHHHHHHhccCCC--cEEEEECCcHHHH----HHHHHHHhhCCc------cEEEEEcCC----H---HHHHHHHHHH
Confidence 4456677666666533 4788999997654 444554443343 677777764 1 1122222222
Q ss_pred hcc----cCCCCCHHHHHhccCCcEEEeecCC-CCCCCHHHHHHHHcCCCCcEEEec-CCCCCCCCCCHHHHhc
Q 007112 420 AHE----HAPIKSLLDAVKAIKPTMLMGTSGV-GKTFTKEVVEAMASFNEKPVIFAL-SNPTSQSECTAEEAYT 487 (617)
Q Consensus 420 A~~----~~~~~~L~eaV~~vkPtvLIG~S~~-~g~Fteevv~~Ma~~~erPIIFaL-SNPt~~aEct~edA~~ 487 (617)
.+. .....+++++|+. .|+++.++.. ..+|..++|+ +.=-|-++ ||+-.+-|+.+|-..+
T Consensus 176 ~~~~~~~v~a~~s~~~av~~--aDiIvt~T~s~~Pil~~~~l~------~G~hI~aiGad~p~k~Eld~e~l~r 241 (330)
T COG2423 176 RKRGGEAVGAADSAEEAVEG--ADIVVTATPSTEPVLKAEWLK------PGTHINAIGADAPGKRELDPEVLAR 241 (330)
T ss_pred HhhcCccceeccCHHHHhhc--CCEEEEecCCCCCeecHhhcC------CCcEEEecCCCCcccccCCHHHHHh
Confidence 222 2346799999998 9999987433 2478888886 23333343 5677889999976544
No 252
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=66.25 E-value=24 Score=38.70 Aligned_cols=83 Identities=14% Similarity=0.216 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchh
Q 007112 337 ASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 415 (617)
Q Consensus 337 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~ 415 (617)
.-+|-.|++.=++-.|.+++++++|++|-+. .|.-+|.||.. .|. .+.+|.++
T Consensus 194 ~PCTp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~-----~~A-------TVTicHs~-------------- 247 (345)
T PLN02897 194 VSCTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQR-----HDA-------TVSTVHAF-------------- 247 (345)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CCC-------EEEEEcCC--------------
Confidence 4667788888889999999999999999764 57777777753 242 34555443
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007112 416 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 457 (617)
Q Consensus 416 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 457 (617)
.++|.+.+++ +|++|-..|.++.|+.++|+
T Consensus 248 ----------T~nl~~~~~~--ADIvIsAvGkp~~v~~d~vk 277 (345)
T PLN02897 248 ----------TKDPEQITRK--ADIVIAAAGIPNLVRGSWLK 277 (345)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1357788887 99999999999999999997
No 253
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=66.04 E-value=8.1 Score=39.15 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=25.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcc
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI 404 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi 404 (617)
-+|+|+|||.||+..|-.|... |+ ++.++|++.-.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-----G~-------~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-----GI-------DVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-----TC-------EEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----cc-------ccccchhcccc
Confidence 4799999999999999888753 65 47788886443
No 254
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=66.04 E-value=25 Score=35.34 Aligned_cols=60 Identities=20% Similarity=0.350 Sum_probs=41.6
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccC
Q 007112 359 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIK 437 (617)
Q Consensus 359 riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vk 437 (617)
||++.|| |-.|-.+++.+.+ .| .+++.+++. .. ++. ...++.++++..+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~-----~g-------~~v~~~~r~------~~-d~~-----------~~~~~~~~~~~~~ 50 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSP-----EG-------RVVVALTSS------QL-DLT-----------DPEALERLLRAIR 50 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHh-----cC-------CEEEEeCCc------cc-CCC-----------CHHHHHHHHHhCC
Confidence 6899996 9888888887754 25 357777763 11 121 1245778888889
Q ss_pred CcEEEeecCCC
Q 007112 438 PTMLMGTSGVG 448 (617)
Q Consensus 438 PtvLIG~S~~~ 448 (617)
||++|=+.+..
T Consensus 51 ~d~vi~~a~~~ 61 (287)
T TIGR01214 51 PDAVVNTAAYT 61 (287)
T ss_pred CCEEEECCccc
Confidence 99999887653
No 255
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=65.81 E-value=18 Score=38.69 Aligned_cols=119 Identities=19% Similarity=0.258 Sum_probs=82.6
Q ss_pred CCeeeeeecCCCCcHHHHHHHHc--CCCceeec--------CccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HH
Q 007112 301 EKVLIQFEDFANHNAFELLSKYS--SSHLVFND--------DIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGE-AG 369 (617)
Q Consensus 301 p~~lIqfEDf~~~~Af~lL~ryr--~~~~~FND--------DiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag 369 (617)
-..+||+==...-++-.+|+.-- +++==||- ...+--.+|-+|++--++-.+.+|.+.++|++|.+. -|
T Consensus 90 ~GIlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi~~ll~~~~i~l~Gk~~vVVGrS~iVG 169 (283)
T COG0190 90 DGILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQGEPGFLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVG 169 (283)
T ss_pred cEEEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcchhcCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCc
Confidence 34567776555555566665532 11111111 133455788999999999999999999999999986 46
Q ss_pred HHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCC
Q 007112 370 TGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGK 449 (617)
Q Consensus 370 ~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g 449 (617)
--+|.+|..+ +. .+-+|+|+ .++|.+.+++ +|++|-.-|.++
T Consensus 170 kPla~lL~~~-----na-------TVtvcHs~------------------------T~~l~~~~k~--ADIvv~AvG~p~ 211 (283)
T COG0190 170 KPLALLLLNA-----NA-------TVTVCHSR------------------------TKDLASITKN--ADIVVVAVGKPH 211 (283)
T ss_pred HHHHHHHHhC-----CC-------EEEEEcCC------------------------CCCHHHHhhh--CCEEEEecCCcc
Confidence 7777777542 32 35555543 1357788887 999999999999
Q ss_pred CCCHHHHH
Q 007112 450 TFTKEVVE 457 (617)
Q Consensus 450 ~Fteevv~ 457 (617)
.|+.++|+
T Consensus 212 ~i~~d~vk 219 (283)
T COG0190 212 FIKADMVK 219 (283)
T ss_pred cccccccc
Confidence 99988886
No 256
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=65.40 E-value=17 Score=38.17 Aligned_cols=31 Identities=32% Similarity=0.382 Sum_probs=24.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
||.|+|||+.|+.+|..+.+. | .++.+++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-----g-------~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-----K-------ISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 699999999999999998653 4 456677764
No 257
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=65.27 E-value=14 Score=40.05 Aligned_cols=108 Identities=19% Similarity=0.339 Sum_probs=68.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC-CcccCCcccCCchhchhhh-ccc--CCCCCHHHHH
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK-GLIVSSRKESLQHFKKPWA-HEH--APIKSLLDAV 433 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~-GLi~~~R~~~L~~~k~~fA-~~~--~~~~~L~eaV 433 (617)
.||.++|||..|-..|-+|+. .++. +.+.|+|.. +...-... +|.+-. .+. .+. ....+ .+.+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~-----~~~~-----~el~LiDi~~~~~~G~a~-DL~~~~-~~~~~~~~i~~~~~-y~~~ 67 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLL-----QGLG-----SELVLIDINEEKAEGVAL-DLSHAA-APLGSDVKITGDGD-YEDL 67 (313)
T ss_pred CeEEEECCChHHHHHHHHHhc-----cccc-----ceEEEEEcccccccchhc-chhhcc-hhccCceEEecCCC-hhhh
Confidence 389999999999998888833 2542 379999987 22211111 233221 111 110 00023 4556
Q ss_pred hccCCcEEEeecCCC---C-----------CCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc
Q 007112 434 KAIKPTMLMGTSGVG---K-----------TFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTW 488 (617)
Q Consensus 434 ~~vkPtvLIG~S~~~---g-----------~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~w 488 (617)
+. .|+.|=+.|.+ | -.-+++.+++++++...||+-.|||. |..+|
T Consensus 68 ~~--aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPv--------D~~ty 126 (313)
T COG0039 68 KG--ADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPV--------DILTY 126 (313)
T ss_pred cC--CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcH--------HHHHH
Confidence 66 78877555444 3 13357888999999999999999998 77766
No 258
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=64.84 E-value=25 Score=36.78 Aligned_cols=94 Identities=14% Similarity=0.125 Sum_probs=50.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccC
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIK 437 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vk 437 (617)
.+|.|+|+|..|..+|..+... |. ..+++++|++. .+ +...++.-. ......++.++++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-----g~-----~~~V~~~dr~~----~~---~~~a~~~g~-~~~~~~~~~~~~~~-- 66 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-----GL-----AGEIVGADRSA----ET---RARARELGL-GDRVTTSAAEAVKG-- 66 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CcEEEEEECCH----HH---HHHHHhCCC-CceecCCHHHHhcC--
Confidence 6899999999999999888643 53 13688888742 11 111110000 00112355666654
Q ss_pred CcEEEeecCCCCCCCHHHHHHHHcC-CCCcEEEecCC
Q 007112 438 PTMLMGTSGVGKTFTKEVVEAMASF-NEKPVIFALSN 473 (617)
Q Consensus 438 PtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSN 473 (617)
+|++| ++... ...+++++.+... .+..+|+-++.
T Consensus 67 aDvVi-iavp~-~~~~~v~~~l~~~l~~~~iv~dvgs 101 (307)
T PRK07502 67 ADLVI-LCVPV-GASGAVAAEIAPHLKPGAIVTDVGS 101 (307)
T ss_pred CCEEE-ECCCH-HHHHHHHHHHHhhCCCCCEEEeCcc
Confidence 67666 33322 2345666665432 33445555443
No 259
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=64.21 E-value=11 Score=35.85 Aligned_cols=102 Identities=17% Similarity=0.200 Sum_probs=56.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc-cCCCCCHHHHHhcc
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAPIKSLLDAVKAI 436 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~-~~~~~~L~eaV~~v 436 (617)
.||-|+|.|..|.+||+.|... |. +++.+|+. .++ .+. +... .....|+.|+++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-----g~-------~v~~~d~~----~~~---~~~----~~~~g~~~~~s~~e~~~~- 57 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-----GY-------EVTVYDRS----PEK---AEA----LAEAGAEVADSPAEAAEQ- 57 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-----TT-------EEEEEESS----HHH---HHH----HHHTTEEEESSHHHHHHH-
T ss_pred CEEEEEchHHHHHHHHHHHHhc-----CC-------eEEeeccc----hhh---hhh----hHHhhhhhhhhhhhHhhc-
Confidence 5899999999999999999643 53 58888853 111 222 2221 2234789999988
Q ss_pred CCcEEEeecCCCCCCCHHHHHH--H-HcCCCCcEEEecCCCCCCCCCCHHHHhc
Q 007112 437 KPTMLMGTSGVGKTFTKEVVEA--M-ASFNEKPVIFALSNPTSQSECTAEEAYT 487 (617)
Q Consensus 437 kPtvLIG~S~~~g~Fteevv~~--M-a~~~erPIIFaLSNPt~~aEct~edA~~ 487 (617)
.|++|=+-.-+ .=.++++.. + +...+..||.=+|+-. +|.+-+-+-.
T Consensus 58 -~dvvi~~v~~~-~~v~~v~~~~~i~~~l~~g~iiid~sT~~--p~~~~~~~~~ 107 (163)
T PF03446_consen 58 -ADVVILCVPDD-DAVEAVLFGENILAGLRPGKIIIDMSTIS--PETSRELAER 107 (163)
T ss_dssp -BSEEEE-SSSH-HHHHHHHHCTTHGGGS-TTEEEEE-SS----HHHHHHHHHH
T ss_pred -ccceEeecccc-hhhhhhhhhhHHhhccccceEEEecCCcc--hhhhhhhhhh
Confidence 57776432211 113455554 3 3345666777777755 5555544433
No 260
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=64.17 E-value=15 Score=39.04 Aligned_cols=124 Identities=18% Similarity=0.180 Sum_probs=74.3
Q ss_pred EeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEE
Q 007112 362 FLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTML 441 (617)
Q Consensus 362 ~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvL 441 (617)
|+|||..|..+|-+|+. .|+ ...|.|+|.+-=..++-.-+|.+..-.+.+...-..+-.+.++. .|++
T Consensus 1 iIGaG~VG~~~a~~l~~-----~~l-----~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d--aDiv 68 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLN-----QGI-----ADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKD--ADLV 68 (299)
T ss_pred CCCcCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCC--CCEE
Confidence 57999999999998864 255 25799999842112211112333222221111001123466776 8999
Q ss_pred EeecCCCCC--C------------CHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccC--cEEEeeCCC
Q 007112 442 MGTSGVGKT--F------------TKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKG--QAIFASGSP 500 (617)
Q Consensus 442 IG~S~~~g~--F------------teevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~G--raifASGSP 500 (617)
|=+.+.+.. - =+++++.+.+++..-+|+-.|||.. ....-++++++= +-+|.+|.-
T Consensus 69 Vitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d---~~t~~~~~~sg~p~~~viG~gt~ 140 (299)
T TIGR01771 69 VITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVD---ILTYVAWKLSGFPKNRVIGSGTV 140 (299)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHH---HHHHHHHHHhCCCHHHEEeccch
Confidence 877666421 1 1367788888999999999999983 555555555421 236777643
No 261
>PLN02688 pyrroline-5-carboxylate reductase
Probab=63.33 E-value=52 Score=33.34 Aligned_cols=94 Identities=16% Similarity=0.238 Sum_probs=54.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEE-ccCCcccCCcccCCchhchhhhccc-CCCCCHHHHHhcc
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLV-DSKGLIVSSRKESLQHFKKPWAHEH-APIKSLLDAVKAI 436 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lv-D~~GLi~~~R~~~L~~~k~~fA~~~-~~~~~L~eaV~~v 436 (617)
||.|+|.|..|..||+.|++. |.- -..+|+++ |+. .++ .+ .+.... ....+..|++++
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~-----g~~---~~~~i~v~~~r~----~~~---~~----~~~~~g~~~~~~~~e~~~~- 61 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVAS-----GVV---PPSRISTADDSN----PAR---RD----VFQSLGVKTAASNTEVVKS- 61 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHC-----CCC---CcceEEEEeCCC----HHH---HH----HHHHcCCEEeCChHHHHhc-
Confidence 689999999999999998653 420 02467777 542 111 11 122111 123567788875
Q ss_pred CCcEEEeecCCCCCCCHHHHHHHHcC-CCCcEEEecCCCC
Q 007112 437 KPTMLMGTSGVGKTFTKEVVEAMASF-NEKPVIFALSNPT 475 (617)
Q Consensus 437 kPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPt 475 (617)
.|++| ++-.+ ...+++++.+... .+..+|..+++.+
T Consensus 62 -aDvVi-l~v~~-~~~~~vl~~l~~~~~~~~~iIs~~~g~ 98 (266)
T PLN02688 62 -SDVII-LAVKP-QVVKDVLTELRPLLSKDKLLVSVAAGI 98 (266)
T ss_pred -CCEEE-EEECc-HHHHHHHHHHHhhcCCCCEEEEecCCC
Confidence 66665 33333 4577888777543 3445666665554
No 262
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=63.29 E-value=2.1e+02 Score=33.60 Aligned_cols=109 Identities=22% Similarity=0.225 Sum_probs=60.0
Q ss_pred HHHhcc------CCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCCCCcc
Q 007112 431 DAVKAI------KPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSPFDPV 504 (617)
Q Consensus 431 eaV~~v------kPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~GraifASGSPF~pv 504 (617)
|+.+++ +||.++...|.||.+.- +...... .+.|-|++.- |....-++++-+-.++.|+.-+..|+
T Consensus 426 Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~G-i~~~f~~-~~~v~iigVE-~~g~~~~~~~~~a~l~~g~~g~~~g~----- 497 (610)
T PRK13803 426 EAKEQLKEQTGKLPDAIIACVGGGSNAIG-IFYHFLD-DPSVKLIGVE-AGGKGVNTGEHAATIKKGRKGVLHGS----- 497 (610)
T ss_pred HHHHHHHHhhCCCCCEEEEEeCcCHhHHH-HHHHHhh-CCCceEEEEe-cCCCCcccccccchhhcCCeeeeccc-----
Confidence 666665 59999999888765432 2222211 3344444332 22223344555555556655444443
Q ss_pred eeCCeee----ccCCCCcccc------cchhhHHHHHh------CCcccCHHHHHHHHHHHHh
Q 007112 505 EYNGKVF----VPGQGNNAYI------FPGLGLGLIIS------GAIRVRDEMLLAASEALAA 551 (617)
Q Consensus 505 ~~~Gk~~----~p~Q~NN~yi------FPGiglG~l~s------~a~~Itd~M~laAA~aLA~ 551 (617)
+++ .-||.-+.+. +||+|-..+.. ....|||+-.++|.+.||.
T Consensus 498 ----~~~~~~~~~g~~~~~~sia~gl~~~gvg~~~~~~~~~~~~~~v~Vtd~ea~~a~~~La~ 556 (610)
T PRK13803 498 ----MTYLMQDENGQILEPHSISAGLDYPGIGPMHANLFETGRAIYTSVTDEEALDAFKLLAK 556 (610)
T ss_pred ----eeeeecccCCcccCCceeeccCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHH
Confidence 222 1233333332 58887654422 2457999999999999985
No 263
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=62.72 E-value=25 Score=37.39 Aligned_cols=104 Identities=14% Similarity=0.195 Sum_probs=66.0
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc----cCCCCCHHH
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE----HAPIKSLLD 431 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~----~~~~~~L~e 431 (617)
.-+++.++|+|.=|..-++.++.. ..+ ++|.+.|+. .+ +...+...+.+. .....+++|
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v----~~i------~~v~v~~r~----~~---~a~~f~~~~~~~~~~~v~~~~~~~e 178 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASV----YNP------KRIRVYSRN----FD---HARAFAERFSKEFGVDIRPVDNAEA 178 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCC------CEEEEECCC----HH---HHHHHHHHHHHhcCCcEEEeCCHHH
Confidence 458999999999888777666553 233 778888774 22 233444444332 122478999
Q ss_pred HHhccCCcEEEeecCC-CCCCCHHHHHHHHcCCCCcEEEec-CCCCCCCCCCHHH
Q 007112 432 AVKAIKPTMLMGTSGV-GKTFTKEVVEAMASFNEKPVIFAL-SNPTSQSECTAEE 484 (617)
Q Consensus 432 aV~~vkPtvLIG~S~~-~g~Fteevv~~Ma~~~erPIIFaL-SNPt~~aEct~ed 484 (617)
+++. .||++-+++. ..+|..++++. .--|-++ |+--.+.|+.++-
T Consensus 179 av~~--aDIV~taT~s~~P~~~~~~l~p------g~hV~aiGs~~p~~~El~~~~ 225 (301)
T PRK06407 179 ALRD--ADTITSITNSDTPIFNRKYLGD------EYHVNLAGSNYPNRREAEHSV 225 (301)
T ss_pred HHhc--CCEEEEecCCCCcEecHHHcCC------CceEEecCCCCCCcccCCHHH
Confidence 9987 9999976433 24677777752 2335554 3323578888874
No 264
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=62.53 E-value=32 Score=36.37 Aligned_cols=105 Identities=15% Similarity=0.203 Sum_probs=63.5
Q ss_pred hCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchh----------chhh
Q 007112 351 VGGTLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF----------KKPW 419 (617)
Q Consensus 351 ~g~~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~----------k~~f 419 (617)
++..++..||+|.|| |-.|.-+++.|+.. | .+++.+|+. ..+....+... +..|
T Consensus 9 ~~~~~~~~~vlVtGatGfiG~~lv~~L~~~-----g-------~~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (348)
T PRK15181 9 TKLVLAPKRWLITGVAGFIGSGLLEELLFL-----N-------QTVIGLDNF---STGYQHNLDDVRTSVSEEQWSRFIF 73 (348)
T ss_pred hcccccCCEEEEECCccHHHHHHHHHHHHC-----C-------CEEEEEeCC---CCcchhhhhhhhhccccccCCceEE
Confidence 445567789999997 99998888888642 4 257777763 11111111111 0111
Q ss_pred hc-ccCCCCCHHHHHhccCCcEEEeecCCCCC----------------CCHHHHHHHHcCCCCcEEEecC
Q 007112 420 AH-EHAPIKSLLDAVKAIKPTMLMGTSGVGKT----------------FTKEVVEAMASFNEKPVIFALS 472 (617)
Q Consensus 420 A~-~~~~~~~L~eaV~~vkPtvLIG~S~~~g~----------------Fteevv~~Ma~~~erPIIFaLS 472 (617)
-. +-.+...|.++++. ||++|=+.+.... .|..+++++.+..-+.+||+=|
T Consensus 74 ~~~Di~d~~~l~~~~~~--~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS 141 (348)
T PRK15181 74 IQGDIRKFTDCQKACKN--VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAAS 141 (348)
T ss_pred EEccCCCHHHHHHHhhC--CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Confidence 11 11122356777775 9999988876432 2457888888776678998754
No 265
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=62.37 E-value=7 Score=41.16 Aligned_cols=105 Identities=19% Similarity=0.276 Sum_probs=59.0
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHH
Q 007112 354 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAV 433 (617)
Q Consensus 354 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV 433 (617)
.|++++|+++|.|..|-=+++.|+. .|+ .+|.++|-+-+=.++-...+......+.++ ...=+.|-|
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaR-----sGi------g~itlID~D~v~vTN~NRQi~A~~~~iGk~--Kv~vm~eri 93 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALAR-----SGI------GRITLIDMDDVCVTNTNRQIHALLGDIGKP--KVEVMKERI 93 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHH-----cCC------CeEEEEecccccccccchhhHhhhhhcccH--HHHHHHHHH
Confidence 4789999999999888888777765 476 889999998664433211111111111111 112355666
Q ss_pred hccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007112 434 KAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN 473 (617)
Q Consensus 434 ~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN 473 (617)
+.+.|..=| +...-.+|+|-++..-..+-.=||=|+=|
T Consensus 94 ~~InP~c~V--~~~~~f~t~en~~~~~~~~~DyvIDaiD~ 131 (263)
T COG1179 94 KQINPECEV--TAINDFITEENLEDLLSKGFDYVIDAIDS 131 (263)
T ss_pred HhhCCCceE--eehHhhhCHhHHHHHhcCCCCEEEEchhh
Confidence 666665433 23333456665555543334444444444
No 266
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=62.20 E-value=16 Score=39.90 Aligned_cols=99 Identities=17% Similarity=0.312 Sum_probs=52.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCc--ccCCccc--CCchhchhhhcccCCCCCHHHHH
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL--IVSSRKE--SLQHFKKPWAHEHAPIKSLLDAV 433 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GL--i~~~R~~--~L~~~k~~fA~~~~~~~~L~eaV 433 (617)
.+|.++|||+=|+.+|..+.+. | -.=++|..|.+=. |-.+|.+ .|+.. .+...-.-..+|.+++
T Consensus 2 ~kI~ViGaGswGTALA~~la~n-----g-----~~V~lw~r~~~~~~~i~~~~~N~~yLp~i--~lp~~l~at~Dl~~a~ 69 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN-----G-----HEVRLWGRDEEIVAEINETRENPKYLPGI--LLPPNLKATTDLAEAL 69 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc-----C-----CeeEEEecCHHHHHHHHhcCcCccccCCc--cCCcccccccCHHHHH
Confidence 5899999999999999999764 4 1235777664310 1111211 11110 1100111125788887
Q ss_pred hccCCcEEEeecCCCCCCCHHHHHHHHc-CCCCcEEEecC
Q 007112 434 KAIKPTMLMGTSGVGKTFTKEVVEAMAS-FNEKPVIFALS 472 (617)
Q Consensus 434 ~~vkPtvLIG~S~~~g~Fteevv~~Ma~-~~erPIIFaLS 472 (617)
+. ---+|++++++ |..++++.|.. ..++.+|.-+|
T Consensus 70 ~~-ad~iv~avPs~---~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 70 DG-ADIIVIAVPSQ---ALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred hc-CCEEEEECChH---HHHHHHHHHhhhccCCCeEEEEe
Confidence 75 12344555553 46777777742 23444444443
No 267
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=62.11 E-value=19 Score=38.69 Aligned_cols=130 Identities=18% Similarity=0.298 Sum_probs=78.3
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCC-cccCCchhchhhhcccC--CCCCH
Q 007112 353 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSS-RKESLQHFKKPWAHEHA--PIKSL 429 (617)
Q Consensus 353 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~-R~~~L~~~k~~fA~~~~--~~~~L 429 (617)
.+.+..||.++|+|..|+.+|-.|+.. |++ +++.++|-+==-.++ .+ +|+ |-.+|-+... ..++.
T Consensus 16 ~~~~~~KItVVG~G~VGmAca~siL~k-----~La-----del~lvDv~~dklkGE~M-DLq-H~s~f~~~~~V~~~~Dy 83 (332)
T KOG1495|consen 16 KEFKHNKITVVGVGQVGMACAISILLK-----GLA-----DELVLVDVNEDKLKGEMM-DLQ-HGSAFLSTPNVVASKDY 83 (332)
T ss_pred ccccCceEEEEccchHHHHHHHHHHHh-----hhh-----hceEEEecCcchhhhhhh-hhc-cccccccCCceEecCcc
Confidence 456678999999999999999988753 663 678899965211111 12 244 3345544311 11222
Q ss_pred HHHHhccCCcEEEeecCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccC----
Q 007112 430 LDAVKAIKPTMLMGTSGVGKT--------------FTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKG---- 491 (617)
Q Consensus 430 ~eaV~~vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~G---- 491 (617)
.. -+ ..++.|=+.+.-+- .=+.+|..+.++.+.-|++-.|||. |.++|---
T Consensus 84 ~~-sa--~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPV--------DilTYv~wKLSg 152 (332)
T KOG1495|consen 84 SV-SA--NSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPV--------DILTYVTWKLSG 152 (332)
T ss_pred cc-cC--CCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCch--------HHHHHHHHHHcC
Confidence 21 12 24555544443322 1246777788999999999999998 76665211
Q ss_pred ---cEEEeeCCCCCcce
Q 007112 492 ---QAIFASGSPFDPVE 505 (617)
Q Consensus 492 ---raifASGSPF~pv~ 505 (617)
.-+|.||.-.+...
T Consensus 153 fP~nRViGsGcnLDsaR 169 (332)
T KOG1495|consen 153 FPKNRVIGSGCNLDSAR 169 (332)
T ss_pred CcccceeccCcCccHHH
Confidence 23566776665554
No 268
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=61.97 E-value=11 Score=40.63 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=28.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
||+++|+|.-|+-+|+.|+.+ |+ ++|.++|.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-----Gv------g~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-----GF------GEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-----cC------CeEEEEcCC
Confidence 689999999999999999864 76 789999987
No 269
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=61.76 E-value=22 Score=34.75 Aligned_cols=35 Identities=29% Similarity=0.305 Sum_probs=23.6
Q ss_pred CCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 355 LADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 355 l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+++++++|.|+ |..|..+|+.+++ .| -+++++|++
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~-----~g-------~~v~~~~r~ 37 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAK-----EG-------AKVVIADLN 37 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 56789999996 5566666666543 25 368888774
No 270
>PRK07877 hypothetical protein; Provisional
Probab=61.46 E-value=16 Score=43.58 Aligned_cols=101 Identities=20% Similarity=0.168 Sum_probs=61.0
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCch----------hchhhhcc
Q 007112 353 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH----------FKKPWAHE 422 (617)
Q Consensus 353 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~----------~k~~fA~~ 422 (617)
.+|++.||+|+|+| .|.-+|..|+.+ |+ ..+|.++|.+=+ ..+ +|+. .|..-|..
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~Lara-----Gv-----vG~l~lvD~D~v-e~s---NLnRq~~~~~diG~~Kv~~a~~ 167 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAE-----GL-----CGELRLADFDTL-ELS---NLNRVPAGVFDLGVNKAVVAAR 167 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHc-----cC-----CCeEEEEcCCEE-ccc---ccccccCChhhcccHHHHHHHH
Confidence 46889999999998 898899888764 63 268999998833 221 2444 11111110
Q ss_pred -----cCC---------C--CCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 007112 423 -----HAP---------I--KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALS 472 (617)
Q Consensus 423 -----~~~---------~--~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 472 (617)
.+. + .++.+.++. .|++|-++-- .=++-+|...|.....|+|++.+
T Consensus 168 ~l~~inp~i~v~~~~~~i~~~n~~~~l~~--~DlVvD~~D~--~~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 168 RIAELDPYLPVEVFTDGLTEDNVDAFLDG--LDVVVEECDS--LDVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred HHHHHCCCCEEEEEeccCCHHHHHHHhcC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEcC
Confidence 000 1 145555554 6666665542 23566666666667777777764
No 271
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=61.14 E-value=41 Score=36.40 Aligned_cols=165 Identities=17% Similarity=0.196 Sum_probs=89.7
Q ss_pred HhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhh-hcccCCCCC
Q 007112 350 LVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPW-AHEHAPIKS 428 (617)
Q Consensus 350 ~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~f-A~~~~~~~~ 428 (617)
..|..+...++-|+|.|..|..||+.+. ++ |+ +|...|++.. +...+.+ ++ .-+
T Consensus 139 ~~~~~l~gktvGIiG~GrIG~avA~r~~-~F----gm-------~v~y~~~~~~---------~~~~~~~~~~----y~~ 193 (324)
T COG1052 139 LLGFDLRGKTLGIIGLGRIGQAVARRLK-GF----GM-------KVLYYDRSPN---------PEAEKELGAR----YVD 193 (324)
T ss_pred ccccCCCCCEEEEECCCHHHHHHHHHHh-cC----CC-------EEEEECCCCC---------hHHHhhcCce----ecc
Confidence 4456788999999999999999999997 43 54 4555666532 1111111 21 123
Q ss_pred HHHHHhccCCcEEEeecCC----CCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCC---C
Q 007112 429 LLDAVKAIKPTMLMGTSGV----GKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSP---F 501 (617)
Q Consensus 429 L~eaV~~vkPtvLIG~S~~----~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~GraifASGSP---F 501 (617)
|.|.++. .|+|+-..-- -++|+++.++.|. +.-+|.=.|.=.--=|----+|++ +|+ |.+-|.- +
T Consensus 194 l~ell~~--sDii~l~~Plt~~T~hLin~~~l~~mk---~ga~lVNtaRG~~VDe~ALi~AL~--~g~-i~gaglDV~e~ 265 (324)
T COG1052 194 LDELLAE--SDIISLHCPLTPETRHLINAEELAKMK---PGAILVNTARGGLVDEQALIDALK--SGK-IAGAGLDVFEN 265 (324)
T ss_pred HHHHHHh--CCEEEEeCCCChHHhhhcCHHHHHhCC---CCeEEEECCCccccCHHHHHHHHH--hCC-cceEEeeecCC
Confidence 8888887 8988854221 2689999999995 445555444322212222223443 343 4444420 1
Q ss_pred CcceeCCeee-ccCCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHHHhcc
Q 007112 502 DPVEYNGKVF-VPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQV 553 (617)
Q Consensus 502 ~pv~~~Gk~~-~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v 553 (617)
+|...+-... .++. .|..+-|=+|.+..-++ ..|...+.+.|-+.+
T Consensus 266 Ep~~~d~~l~~l~~~-~~vvltPHia~at~ea~-----~~m~~~~~~nl~~~~ 312 (324)
T COG1052 266 EPALFDHPLLRLDNF-PNVVLTPHIASATEEAR-----KAMAELALENLEAFF 312 (324)
T ss_pred CCCCCChhHhhccCC-CCEEEccccccccHHHH-----HHHHHHHHHHHHHHH
Confidence 1111111111 1222 45777776666553322 345555555555554
No 272
>PRK05866 short chain dehydrogenase; Provisional
Probab=61.09 E-value=22 Score=36.77 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=25.7
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 352 GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 352 g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+..+++.++||.||++ ||...++..+.+ .| .+++++|++
T Consensus 35 ~~~~~~k~vlItGasg---gIG~~la~~La~-~G-------~~Vi~~~R~ 73 (293)
T PRK05866 35 PVDLTGKRILLTGASS---GIGEAAAEQFAR-RG-------ATVVAVARR 73 (293)
T ss_pred CcCCCCCEEEEeCCCc---HHHHHHHHHHHH-CC-------CEEEEEECC
Confidence 4557788999999843 445555555544 36 368888875
No 273
>PRK06046 alanine dehydrogenase; Validated
Probab=60.99 E-value=57 Score=34.87 Aligned_cols=103 Identities=15% Similarity=0.161 Sum_probs=64.2
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc----cCCCCCHHH
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE----HAPIKSLLD 431 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~----~~~~~~L~e 431 (617)
.-.++.|+|+|..|...++.+... .++ ++++++|++ .++ .+.+...+... .....++.+
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~----~~i------~~v~v~~r~----~~~---~~~~~~~~~~~~~~~v~~~~~~~~ 190 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEV----FDL------EEVRVYDRT----KSS---AEKFVERMSSVVGCDVTVAEDIEE 190 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhh----CCc------eEEEEECCC----HHH---HHHHHHHHHhhcCceEEEeCCHHH
Confidence 357999999999988777666432 233 789999886 222 23333333211 112457888
Q ss_pred HHhccCCcEEEeecCC-CCCCCHHHHHHHHcCCCCcEEEecC-CCCCCCCCCHHH
Q 007112 432 AVKAIKPTMLMGTSGV-GKTFTKEVVEAMASFNEKPVIFALS-NPTSQSECTAEE 484 (617)
Q Consensus 432 aV~~vkPtvLIG~S~~-~g~Fteevv~~Ma~~~erPIIFaLS-NPt~~aEct~ed 484 (617)
+++ .|+++-++.. ..+|..+.++ +.-.|-++. +-..+.|+.++-
T Consensus 191 ~l~---aDiVv~aTps~~P~~~~~~l~------~g~hV~~iGs~~p~~~El~~~~ 236 (326)
T PRK06046 191 ACD---CDILVTTTPSRKPVVKAEWIK------EGTHINAIGADAPGKQELDPEI 236 (326)
T ss_pred Hhh---CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCCccccCCHHH
Confidence 885 7888866542 3477777774 333466664 444679999874
No 274
>PRK00536 speE spermidine synthase; Provisional
Probab=60.46 E-value=15 Score=38.73 Aligned_cols=101 Identities=15% Similarity=0.160 Sum_probs=61.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCC-CCHHHHHhcc
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPI-KSLLDAVKAI 436 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~-~~L~eaV~~v 436 (617)
.|+||+|+|-.| +++-++.. . +++.|||-++-|++--++.++.....|..+.-.. ..+.+.- .-
T Consensus 74 k~VLIiGGGDGg--~~REvLkh-----~-------~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~-~~ 138 (262)
T PRK00536 74 KEVLIVDGFDLE--LAHQLFKY-----D-------THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD-IK 138 (262)
T ss_pred CeEEEEcCCchH--HHHHHHCc-----C-------CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhcc-CC
Confidence 899999999985 56655543 1 3899999999877544344666555443221111 1122211 13
Q ss_pred CCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCCC
Q 007112 437 KPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSPF 501 (617)
Q Consensus 437 kPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~GraifASGSPF 501 (617)
+=||+|-=|. |+++-.+.+. .+++ -+|-.+.-|||||
T Consensus 139 ~fDVIIvDs~----~~~~fy~~~~-----------------------~~L~-~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 139 KYDLIICLQE----PDIHKIDGLK-----------------------RMLK-EDGVFISVAKHPL 175 (262)
T ss_pred cCCEEEEcCC----CChHHHHHHH-----------------------HhcC-CCcEEEECCCCcc
Confidence 5788886553 6766665543 2333 3677777788887
No 275
>PRK06823 ornithine cyclodeaminase; Validated
Probab=59.81 E-value=69 Score=34.39 Aligned_cols=105 Identities=12% Similarity=0.155 Sum_probs=67.1
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc---cCCCCCHHHH
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE---HAPIKSLLDA 432 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~---~~~~~~L~ea 432 (617)
.-.++.++|+|.-+-..++.++.. ..+ ++|+++|+. .++ ...+...+.+. .....+.+|+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v----~~i------~~v~v~~r~----~~~---a~~~~~~~~~~~~~v~~~~~~~~a 189 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV----TDC------RQLWVWGRS----ETA---LEEYRQYAQALGFAVNTTLDAAEV 189 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc----CCC------CEEEEECCC----HHH---HHHHHHHHHhcCCcEEEECCHHHH
Confidence 357999999999888887776553 122 788888774 222 22232222111 1124689999
Q ss_pred HhccCCcEEEeecC-CCCCCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHHHH
Q 007112 433 VKAIKPTMLMGTSG-VGKTFTKEVVEAMASFNEKPVIFALSNPT-SQSECTAEEA 485 (617)
Q Consensus 433 V~~vkPtvLIG~S~-~~g~Fteevv~~Ma~~~erPIIFaLSNPt-~~aEct~edA 485 (617)
|+. .||++-+++ ...+|..+.++ +.-.|-+...-+ .+.|+.++-.
T Consensus 190 v~~--ADIV~taT~s~~P~~~~~~l~------~G~hi~~iGs~~p~~~Eld~~~l 236 (315)
T PRK06823 190 AHA--ANLIVTTTPSREPLLQAEDIQ------PGTHITAVGADSPGKQELDAELV 236 (315)
T ss_pred hcC--CCEEEEecCCCCceeCHHHcC------CCcEEEecCCCCcccccCCHHHH
Confidence 987 999987543 33478888775 455677776433 4689988654
No 276
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=59.80 E-value=67 Score=34.89 Aligned_cols=130 Identities=17% Similarity=0.285 Sum_probs=80.6
Q ss_pred HhcCCCeeeeeecCCCCcHHHHHHHHcCCCceeec-CccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHH
Q 007112 297 QNYGEKVLIQFEDFANHNAFELLSKYSSSHLVFND-DIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAEL 375 (617)
Q Consensus 297 ~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FND-DiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~l 375 (617)
.+| .++++ +-.+. +.+.+.+.+| .++||.|- |-.-=-.=+|+=++.-.+..|+++++.||.++|-+.- ++++-
T Consensus 99 s~y-~D~iv-~R~~~-~~~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~~--~v~~S 172 (334)
T PRK01713 99 GRM-YDAIE-YRGFK-QSIVNELAEY-AGVPVFNGLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDARN--NMGNS 172 (334)
T ss_pred HHh-CCEEE-EEcCc-hHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCcc--CHHHH
Confidence 456 44444 33333 2334444455 46899994 2222234567777777777787899999999998753 47887
Q ss_pred HHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhccc----CCCCCHHHHHhccCCcEEEeec
Q 007112 376 IALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH----APIKSLLDAVKAIKPTMLMGTS 445 (617)
Q Consensus 376 i~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~----~~~~~L~eaV~~vkPtvLIG~S 445 (617)
++.++.+ .|+ +|.++-.+++.-.+ ..-+.-+.+++.. ....++.++++. .||+.-.+
T Consensus 173 l~~~~~~-~g~-------~v~~~~P~~~~p~~---~~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvVyt~~ 233 (334)
T PRK01713 173 LLLIGAK-LGM-------DVRICAPKALLPEA---SLVEMCEKFAKESGARITVTDDIDKAVKG--VDFVHTDV 233 (334)
T ss_pred HHHHHHH-cCC-------EEEEECCchhcCCH---HHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcc
Confidence 7777665 475 58888888773321 1112223344321 123689999998 99998653
No 277
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=59.65 E-value=13 Score=37.15 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=28.6
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcc
Q 007112 354 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDS 400 (617)
Q Consensus 354 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~ 400 (617)
+|++.++||+|+|..|.-.++.|..+ | .+|++++.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~-----g-------a~V~VIs~ 41 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKY-----G-------AHIVVISP 41 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEcC
Confidence 57899999999999998888887653 4 46888875
No 278
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=59.49 E-value=11 Score=37.72 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=25.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+++|+|||.||+..|..+.. .| .++.++|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR-----AN-------LKTLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CCEEEEecc
Confidence 68999999999999988754 25 358899975
No 279
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=59.36 E-value=14 Score=35.61 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=28.8
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 354 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 354 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+|++.++||+|+|..|.-.++.|.++ | .++.+++.+
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~-----g-------a~V~VIsp~ 45 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDT-----G-------AFVTVVSPE 45 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEcCc
Confidence 57899999999999999888888763 4 467777644
No 280
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=59.35 E-value=38 Score=36.10 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=26.1
Q ss_pred CCcEEEeecCCCCCCCHHHHHHHHcCCC--CcEEEecCCCC
Q 007112 437 KPTMLMGTSGVGKTFTKEVVEAMASFNE--KPVIFALSNPT 475 (617)
Q Consensus 437 kPtvLIG~S~~~g~Fteevv~~Ma~~~e--rPIIFaLSNPt 475 (617)
+-|++||+|..|. |+++++++....+ -|+|.=-+||.
T Consensus 127 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~~IaIT~~~~ 165 (296)
T PRK12570 127 ADDVVVGIAASGR--TPYVIGALEYAKQIGATTIALSCNPD 165 (296)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 5699999999886 8999988864333 35544444555
No 281
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=59.10 E-value=37 Score=37.20 Aligned_cols=31 Identities=26% Similarity=0.283 Sum_probs=25.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
||.|+|+|..|..+|..++.. | .+++.+|++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~-----G-------~~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL-----G-------HEVTGVDID 32 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc-----C-------CeEEEEECC
Confidence 689999999999999988653 5 357788864
No 282
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=58.93 E-value=14 Score=41.04 Aligned_cols=84 Identities=14% Similarity=0.011 Sum_probs=47.5
Q ss_pred HHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccC
Q 007112 345 LSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHA 424 (617)
Q Consensus 345 l~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~ 424 (617)
+.++.-....|.+.|+.++|-+.-..|+++.+.+ .|+.. ..+. ++.+ ......+... .-+. .
T Consensus 299 ~~~l~~~~~~l~Gkrvai~~~~~~~~~l~~~l~e-----lGm~v----~~~~-~~~~----~~~~~~~~~~-~~~~---~ 360 (432)
T TIGR01285 299 QDAMLDTHFFLGGKKVAIAAEPDLLAAWATFFTS-----MGAQI----VAAV-TTTG----SPLLQKLPVE-TVVI---G 360 (432)
T ss_pred HHHHHHHHHhhCCCEEEEEcCHHHHHHHHHHHHH-----CCCEE----EEEE-eCCC----CHHHHhCCcC-cEEe---C
Confidence 3444444456678999999988888999999753 47632 1111 2111 0000011111 0011 1
Q ss_pred CCCCHHHHHhccCCcEEEeecC
Q 007112 425 PIKSLLDAVKAIKPTMLMGTSG 446 (617)
Q Consensus 425 ~~~~L~eaV~~vkPtvLIG~S~ 446 (617)
+...|++.+++.+||++||-|-
T Consensus 361 D~~~l~~~i~~~~~dliig~s~ 382 (432)
T TIGR01285 361 DLEDLEDLACAAGADLLITNSH 382 (432)
T ss_pred CHHHHHHHHhhcCCCEEEECcc
Confidence 2246788898999999998654
No 283
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=58.84 E-value=25 Score=41.80 Aligned_cols=107 Identities=14% Similarity=0.093 Sum_probs=62.5
Q ss_pred HHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC--------CCCCCHHHHhccccCcEEEeeCCCCC
Q 007112 431 DAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTS--------QSECTAEEAYTWSKGQAIFASGSPFD 502 (617)
Q Consensus 431 eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~--------~aEct~edA~~wT~GraifASGSPF~ 502 (617)
++=+.++|+++|..++.. +.-.-+....++-+|=|.+=.-||-. ..+-|.++.+++... |+..-=..
T Consensus 413 ~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~---~~~~lgk~ 487 (715)
T PRK11730 413 EVEQKVREDTILASNTST--ISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVA---YASKMGKT 487 (715)
T ss_pred HHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHH---HHHHhCCc
Confidence 334557899999887754 55444444334555668888999963 244455444443211 11212245
Q ss_pred cceeCCeeeccCCCCcccccchhhHHHHHhCCcccCHHHHHHHH
Q 007112 503 PVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAAS 546 (617)
Q Consensus 503 pv~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA 546 (617)
||..+ ..||-.=|-..+|-+--++.+...- .+.+-+.+|.
T Consensus 488 pv~v~---d~pGfv~nRi~~~~~~ea~~lv~~G-a~~e~ID~a~ 527 (715)
T PRK11730 488 PIVVN---DCPGFFVNRVLFPYFAGFSQLLRDG-ADFRQIDKVM 527 (715)
T ss_pred eEEec---CcCchhHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH
Confidence 56552 6788888888888766555444433 5666666554
No 284
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=58.83 E-value=12 Score=40.21 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=26.8
Q ss_pred EEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcc
Q 007112 360 FLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI 404 (617)
Q Consensus 360 iv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi 404 (617)
|+|+|||.||.-+|..+.++ ..| .++.++|++--.
T Consensus 2 viIvGaGpAGlslA~~l~~~---~~g-------~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA---RPG-------LSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc---CCC-------CEEEEEcCCccc
Confidence 78999999999999998443 123 578999987443
No 285
>PRK08618 ornithine cyclodeaminase; Validated
Probab=58.56 E-value=27 Score=37.26 Aligned_cols=105 Identities=14% Similarity=0.207 Sum_probs=60.8
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc----cCCCCCHHH
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE----HAPIKSLLD 431 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~----~~~~~~L~e 431 (617)
...++.++|+|..|-.++..+... .++ ++|.++|+. .+| ...+...+... .....++++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~~~~~~~~~~~~~~~~~~~~~ 188 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAV----RDI------ERVRVYSRT----FEK---AYAFAQEIQSKFNTEIYVVNSADE 188 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCc------cEEEEECCC----HHH---HHHHHHHHHHhcCCcEEEeCCHHH
Confidence 457899999999988777655432 244 779988875 222 22333333211 112467888
Q ss_pred HHhccCCcEEEeecCCC-CCCCHHHHHHHHcCCCCcEEEecC-CCCCCCCCCHHHHhc
Q 007112 432 AVKAIKPTMLMGTSGVG-KTFTKEVVEAMASFNEKPVIFALS-NPTSQSECTAEEAYT 487 (617)
Q Consensus 432 aV~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erPIIFaLS-NPt~~aEct~edA~~ 487 (617)
+++. .|++|-++..+ ..|+ +.+ .+---|.++- +--.+.|+.+ +.+.
T Consensus 189 ~~~~--aDiVi~aT~s~~p~i~-~~l------~~G~hV~~iGs~~p~~~E~~~-~~~~ 236 (325)
T PRK08618 189 AIEE--ADIIVTVTNAKTPVFS-EKL------KKGVHINAVGSFMPDMQELPS-EAIA 236 (325)
T ss_pred HHhc--CCEEEEccCCCCcchH-Hhc------CCCcEEEecCCCCcccccCCH-HHHh
Confidence 9975 89988665433 2333 333 2344465663 3224678887 3443
No 286
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=58.35 E-value=4.7 Score=43.29 Aligned_cols=91 Identities=21% Similarity=0.265 Sum_probs=51.6
Q ss_pred EEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCc----hhchhhhc-ccCCCCCHHHHHh
Q 007112 360 FLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ----HFKKPWAH-EHAPIKSLLDAVK 434 (617)
Q Consensus 360 iv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~----~~k~~fA~-~~~~~~~L~eaV~ 434 (617)
|+|+|+|..|-.+++.|++. ... .++.+.|++ ..+.+.+. ..+-.+.+ +..+..+|.+.++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~----~~~------~~v~va~r~----~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 66 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR----GPF------EEVTVADRN----PEKAERLAEKLLGDRVEAVQVDVNDPESLAELLR 66 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT----TCE-------EEEEEESS----HHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHT
T ss_pred CEEEcCcHHHHHHHHHHhcC----CCC------CcEEEEECC----HHHHHHHHhhccccceeEEEEecCCHHHHHHHHh
Confidence 79999999999999988653 111 278888886 22211111 01111111 1222335888888
Q ss_pred ccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEE
Q 007112 435 AIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIF 469 (617)
Q Consensus 435 ~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 469 (617)
. .|++|-+++.. +...++++-.+. ..+.|=
T Consensus 67 ~--~dvVin~~gp~--~~~~v~~~~i~~-g~~yvD 96 (386)
T PF03435_consen 67 G--CDVVINCAGPF--FGEPVARACIEA-GVHYVD 96 (386)
T ss_dssp T--SSEEEE-SSGG--GHHHHHHHHHHH-T-EEEE
T ss_pred c--CCEEEECCccc--hhHHHHHHHHHh-CCCeec
Confidence 7 69999988755 788888875542 334444
No 287
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=58.23 E-value=28 Score=36.75 Aligned_cols=123 Identities=18% Similarity=0.251 Sum_probs=71.9
Q ss_pred EEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC-CcccCCcccCCchhchhhhccc-CCCCCHHHHHhccC
Q 007112 360 FLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK-GLIVSSRKESLQHFKKPWAHEH-APIKSLLDAVKAIK 437 (617)
Q Consensus 360 iv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~-GLi~~~R~~~L~~~k~~fA~~~-~~~~~L~eaV~~vk 437 (617)
|.++|||..|..+|-.++. .|+ -..+.++|.+ .++..-. .+|.+...++.... ....+ .+.++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~-----~~~-----~~el~l~D~~~~~~~g~~-~DL~~~~~~~~~~~i~~~~~-~~~l~~-- 66 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA-----KGL-----ASELVLVDVNEEKAKGDA-LDLSHASAFLATGTIVRGGD-YADAAD-- 66 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHH-HhHHHhccccCCCeEEECCC-HHHhCC--
Confidence 5789999999999876653 365 2579999974 2211111 12444433321110 01234 456766
Q ss_pred CcEEEeecCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc--cCcEEEeeCC
Q 007112 438 PTMLMGTSGVG---KT-----------FTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWS--KGQAIFASGS 499 (617)
Q Consensus 438 PtvLIG~S~~~---g~-----------Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT--~GraifASGS 499 (617)
.|++|=+.+.+ |- .=+++.+.+.+++..-+|+=.|||. ++...-+++++ .-+-+|++|.
T Consensus 67 aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~---d~~~~~~~~~sg~~~~kviG~gt 141 (300)
T cd00300 67 ADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPV---DILTYVAQKLSGLPKNRVIGSGT 141 (300)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChH---HHHHHHHHHHhCcCHHHEEecCC
Confidence 78887555543 21 1246777888899999999999997 34444454442 1233666653
No 288
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=58.02 E-value=20 Score=38.56 Aligned_cols=98 Identities=17% Similarity=0.171 Sum_probs=51.3
Q ss_pred cCccchhHHHHHHHHHH-HHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcc
Q 007112 331 DDIQGTASVVLAGILSA-LKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRK 409 (617)
Q Consensus 331 DDiQGTaaV~LAgll~A-lr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~ 409 (617)
|+..+.-+=-+|.-+.+ ....+.+..+ +++|+|||+.|+..+.+.. ..|. ++|+++|.. ..|
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~~~~-~V~V~GaGpIGLla~~~a~-----~~Ga------~~Viv~d~~----~~R- 205 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVRPGG-TVVVVGAGPIGLLAIALAK-----LLGA------SVVIVVDRS----PER- 205 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhccCCCCCC-EEEEECCCHHHHHHHHHHH-----HcCC------ceEEEeCCC----HHH-
Confidence 33444444444444334 2222333333 9999999999987633322 2364 689988874 333
Q ss_pred cCCchhchhhhcc--cCCCC-CHHHHH----hccCCcEEEeecCC
Q 007112 410 ESLQHFKKPWAHE--HAPIK-SLLDAV----KAIKPTMLMGTSGV 447 (617)
Q Consensus 410 ~~L~~~k~~fA~~--~~~~~-~L~eaV----~~vkPtvLIG~S~~ 447 (617)
|+..++.++-+ ..... ...+.+ .....|+.|=+||.
T Consensus 206 --l~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~ 248 (350)
T COG1063 206 --LELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGS 248 (350)
T ss_pred --HHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCC
Confidence 43333333322 11111 233333 22368999999993
No 289
>PRK12828 short chain dehydrogenase; Provisional
Probab=57.87 E-value=20 Score=34.50 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=23.3
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 354 TLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 354 ~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
++++.+++|.|| |..|..+++.+ .+ .|. +++++|++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l----~~-~G~-------~v~~~~r~ 40 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWL----AA-RGA-------RVALIGRG 40 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHH----HH-CCC-------eEEEEeCC
Confidence 467789999997 44454455444 33 253 58888875
No 290
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=57.86 E-value=7.3 Score=41.05 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=26.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCc
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 403 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GL 403 (617)
+|||+|+|.||+-.|+.+..... ...+|.++|++.-
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~---------~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPL---------PGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCC---------CCCEEEEECCCCC
Confidence 58999999999988888754211 1357999997754
No 291
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=57.78 E-value=57 Score=31.29 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.1
Q ss_pred CCcEEEeecCCCCCCCHHHHHHHH
Q 007112 437 KPTMLMGTSGVGKTFTKEVVEAMA 460 (617)
Q Consensus 437 kPtvLIG~S~~~g~Fteevv~~Ma 460 (617)
+-|++|++|..| -|+++++.+.
T Consensus 101 ~~Dv~I~iS~SG--~t~~~i~~~~ 122 (177)
T cd05006 101 PGDVLIGISTSG--NSPNVLKALE 122 (177)
T ss_pred CCCEEEEEeCCC--CCHHHHHHHH
Confidence 469999999987 4999999985
No 292
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=57.78 E-value=21 Score=38.82 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=18.3
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007112 359 TFLFLGAGEAGTGIAELIAL 378 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~ 378 (617)
||.|+|||+-|+.+|..+..
T Consensus 1 kI~VIGaG~wGtALA~~la~ 20 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE 20 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH
Confidence 68999999999999999975
No 293
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=57.61 E-value=26 Score=39.10 Aligned_cols=85 Identities=11% Similarity=0.119 Sum_probs=47.4
Q ss_pred HHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCccc--CCchhchh--hh
Q 007112 345 LSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKE--SLQHFKKP--WA 420 (617)
Q Consensus 345 l~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~--~L~~~k~~--fA 420 (617)
..++.-....|++.|+++++.+.-..++++++.+ .|+. +..+.+. .....+ .+...... ..
T Consensus 314 ~~~l~~~~~~L~Gkrv~i~~g~~~~~~l~~~l~e-----lGme-------vv~~~t~---~~~~~d~~~l~~~~~~~~~v 378 (456)
T TIGR01283 314 RPALEPYRERLKGKKAAIYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTEEDYARIRELMGEGTVM 378 (456)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEeee---cCCHHHHHHHHHHcCCCeEE
Confidence 4444445567889999999888888999988753 4773 2223211 111100 01111000 00
Q ss_pred cccCCCCCHHHHHhccCCcEEEee
Q 007112 421 HEHAPIKSLLDAVKAIKPTMLMGT 444 (617)
Q Consensus 421 ~~~~~~~~L~eaV~~vkPtvLIG~ 444 (617)
.+..+...+.+.++..+||++||-
T Consensus 379 ~~~~d~~e~~~~i~~~~pDl~ig~ 402 (456)
T TIGR01283 379 LDDANPRELLKLLLEYKADLLIAG 402 (456)
T ss_pred EeCCCHHHHHHHHhhcCCCEEEEc
Confidence 011122458888899999999984
No 294
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=57.20 E-value=14 Score=39.73 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=27.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCC
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 402 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~G 402 (617)
.+|+|+|||-+|+.+|-.|.+. | .++.++|++-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-----g-------~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-----G-------YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCCC
Confidence 4899999999999999988752 5 4688999864
No 295
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=57.19 E-value=2.4e+02 Score=29.12 Aligned_cols=44 Identities=18% Similarity=0.149 Sum_probs=32.6
Q ss_pred CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeC
Q 007112 451 FTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASG 498 (617)
Q Consensus 451 Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~GraifASG 498 (617)
.+++.++..++..+.|+++-++.... +.+++|.-++ |-.++.-|
T Consensus 183 ~~~~~~~~~~~~~~~Pl~~~~~~~~~--~~~~~~l~~l--G~~~v~~~ 226 (243)
T cd00377 183 KDPEEIRAFAEAPDVPLNVNMTPGGN--LLTVAELAEL--GVRRVSYG 226 (243)
T ss_pred CCHHHHHHHHhcCCCCEEEEecCCCC--CCCHHHHHHC--CCeEEEEC
Confidence 38899999988889999987665442 7899999887 54444433
No 296
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=57.11 E-value=1.7e+02 Score=34.92 Aligned_cols=156 Identities=15% Similarity=0.103 Sum_probs=86.7
Q ss_pred HHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCC--------CCCCHHHHhccccCcEEEeeCCC
Q 007112 429 LLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQ--------SECTAEEAYTWSKGQAIFASGSP 500 (617)
Q Consensus 429 L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~--------aEct~edA~~wT~GraifASGSP 500 (617)
+.++-+.++|+++|..++.+ +.-.-+.+-.++-+|=|.+=.-||... .+-|.++++++... |+..-=
T Consensus 403 ~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~---~~~~~g 477 (699)
T TIGR02440 403 VKDIEQECAAHTIFASNTSS--LPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVA---LAKKQG 477 (699)
T ss_pred HHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHH---HHHHcC
Confidence 33444567899999887754 443333333356677788888998742 34465666554321 222122
Q ss_pred CCcceeCCeeeccCCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHHHhccCcccCCCCCccCCCCChhhhHHHHHHH
Q 007112 501 FDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQVTQEHFDKGLIYPPFTNIRKISAHIAAK 580 (617)
Q Consensus 501 F~pv~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~a 580 (617)
..||..+ ..||-.=|-.++|-+--++.+..-- ++.+-+..|.+.+ |.-..|+.-+..+-..+...
T Consensus 478 k~pv~v~---d~pGfi~nRl~~~~~~Ea~~l~~~G-~~~~dID~a~~~~-----------G~p~GPf~l~D~vGld~~~~ 542 (699)
T TIGR02440 478 KTPIVVA---DKAGFYVNRILAPYMNEAARLLLEG-EPVEHIDKALVKF-----------GFPVGPITLLDEVGIDVGAK 542 (699)
T ss_pred CeEEEEc---cccchHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHc-----------CCCcCHHHHHHHhchHHHHH
Confidence 4566553 4688888888888777666555533 4666666665421 11123444444455556666
Q ss_pred HHHHHHHc-CCCCCCCCchhHHHHHHh
Q 007112 581 VAAKAYDL-GLASRLPRPKDLVSYAES 606 (617)
Q Consensus 581 Va~~A~~~-GlA~~~~~p~dl~~~i~~ 606 (617)
|.+..+++ |- ....|+-+.+.+++
T Consensus 543 i~~~l~~~~~~--~~~~~~~l~~~v~~ 567 (699)
T TIGR02440 543 ISPILEAELGE--RFKAPAVFDKLLSD 567 (699)
T ss_pred HHHHHHHhcCC--CCCCcHHHHHHHHC
Confidence 66554432 22 22223455666655
No 297
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=57.05 E-value=6.5 Score=42.22 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=19.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHH
Q 007112 358 QTFLFLGAGEAGTGIAELIALE 379 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~ 379 (617)
.+|+|+|||-||+..|..|.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~ 22 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKK 22 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHh
Confidence 4799999999999999998764
No 298
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=56.85 E-value=15 Score=36.79 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=29.7
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 354 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 354 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+|+++|+||+|+|..|..-++.|+.+ | .+|.++|.+
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~-----g-------a~VtVvsp~ 41 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKA-----G-------AQLRVIAEE 41 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHC-----C-------CEEEEEcCC
Confidence 47889999999999999998888763 5 368888874
No 299
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=56.83 E-value=48 Score=37.08 Aligned_cols=126 Identities=22% Similarity=0.252 Sum_probs=87.2
Q ss_pred ecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcc
Q 007112 330 NDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRK 409 (617)
Q Consensus 330 NDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~ 409 (617)
.|.-.||+--++-|++ |.|..-+....+|+.|=|--|-|||..+.. .| | ++++.+-+
T Consensus 185 FDNrYGtgqS~~DgI~---RaTn~liaGK~vVV~GYG~vGrG~A~~~rg-----~G-----A--~ViVtEvD-------- 241 (420)
T COG0499 185 FDNRYGTGQSLLDGIL---RATNVLLAGKNVVVAGYGWVGRGIAMRLRG-----MG-----A--RVIVTEVD-------- 241 (420)
T ss_pred cccccccchhHHHHHH---hhhceeecCceEEEecccccchHHHHHhhc-----CC-----C--eEEEEecC--------
Confidence 3677899999999987 456777899999999999999999988743 24 2 35433321
Q ss_pred cCCchhchhhhc-ccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHH----
Q 007112 410 ESLQHFKKPWAH-EHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEE---- 484 (617)
Q Consensus 410 ~~L~~~k~~fA~-~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~ed---- 484 (617)
|.+.-=|. +.-..-++.||++. .|++|=++|.-++.+.|-++.|. .-.|.+=+-- -.-|+..+.
T Consensus 242 ----PI~AleA~MdGf~V~~m~~Aa~~--gDifiT~TGnkdVi~~eh~~~Mk----DgaIl~N~GH-Fd~EI~~~~L~~~ 310 (420)
T COG0499 242 ----PIRALEAAMDGFRVMTMEEAAKT--GDIFVTATGNKDVIRKEHFEKMK----DGAILANAGH-FDVEIDVAGLEEL 310 (420)
T ss_pred ----chHHHHHhhcCcEEEEhHHhhhc--CCEEEEccCCcCccCHHHHHhcc----CCeEEecccc-cceeccHHHHHHh
Confidence 11111111 33334679999998 89999999999999999999994 4445443321 235666654
Q ss_pred Hhccc
Q 007112 485 AYTWS 489 (617)
Q Consensus 485 A~~wT 489 (617)
+.+|.
T Consensus 311 ~~~~~ 315 (420)
T COG0499 311 AVEKR 315 (420)
T ss_pred hhhHh
Confidence 45554
No 300
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=56.49 E-value=59 Score=35.51 Aligned_cols=33 Identities=15% Similarity=0.408 Sum_probs=26.7
Q ss_pred CceEEEeC-cChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 357 DQTFLFLG-AGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 357 d~riv~~G-AGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
..+|.|+| +|..|..+|..+..+ |. .++++|++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~-----G~-------~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLS-----GY-------QVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHC-----CC-------eEEEeCCC
Confidence 37899999 999999999988653 53 48888874
No 301
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=56.39 E-value=10 Score=39.95 Aligned_cols=32 Identities=38% Similarity=0.783 Sum_probs=27.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
..+-|+|||-.|-|||+..+.+ |+ ++|++|++
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~s-----g~-------~V~l~d~~ 43 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATS-----GL-------NVWLVDAN 43 (298)
T ss_pred cceEEEcccccchhHHHHHHhc-----CC-------ceEEecCC
Confidence 4678999999999999988764 65 69999985
No 302
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=56.39 E-value=31 Score=36.22 Aligned_cols=103 Identities=11% Similarity=0.066 Sum_probs=55.0
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCch----hchhhhcccCCCCCHH
Q 007112 355 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH----FKKPWAHEHAPIKSLL 430 (617)
Q Consensus 355 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~----~k~~fA~~~~~~~~L~ 430 (617)
....||.|+|+|+-|..+|-.+.++ | .++.++++... ..-+...+.- ....+ ....-..+.
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~-----g-------~~V~~~~r~~~-~~~~~~g~~~~~~~~~~~~-~~~~~~~~~- 67 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARA-----G-------FDVHFLLRSDY-EAVRENGLQVDSVHGDFHL-PPVQAYRSA- 67 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEEeCCH-HHHHhCCeEEEeCCCCeee-cCceEEcch-
Confidence 3456899999999999999888653 4 34555555321 1111111110 00000 000001122
Q ss_pred HHHhccCCcEEEeecCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCC
Q 007112 431 DAVKAIKPTMLMGTSGVGKTFTKEVVEAMASF-NEKPVIFALSNPTS 476 (617)
Q Consensus 431 eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPt~ 476 (617)
+.+. .+|++| ++... .-++++++.+... .+..+|+.|-|=-.
T Consensus 68 ~~~~--~~D~vi-lavK~-~~~~~~~~~l~~~~~~~~~iv~lqNG~~ 110 (313)
T PRK06249 68 EDMP--PCDWVL-VGLKT-TANALLAPLIPQVAAPDAKVLLLQNGLG 110 (313)
T ss_pred hhcC--CCCEEE-EEecC-CChHhHHHHHhhhcCCCCEEEEecCCCC
Confidence 2233 367776 44433 3478888888653 35677888988764
No 303
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=56.27 E-value=41 Score=38.09 Aligned_cols=133 Identities=11% Similarity=0.019 Sum_probs=75.2
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHH-HHh-ccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHh
Q 007112 358 QTFLFLGA-GEAGTGIAELIALE-MSK-QTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVK 434 (617)
Q Consensus 358 ~riv~~GA-GsAg~GIA~li~~~-~~~-~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~ 434 (617)
-||.|+|| |..|..+|-.|+.. +.. .+|+ -..+.++|.+-=..++-.-+|.+-.-++-++..-..+-.+..+
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i-----~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~k 175 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPI-----ALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQ 175 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCc-----ccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhC
Confidence 79999999 99999999988652 100 1133 2468888875221111111233332233221110123346677
Q ss_pred ccCCcEEEeecCCCCC--------------CCHHHHHHHHc-CCCCcEEEecCCCCCCCCCCHHHHhccccC--cEEEee
Q 007112 435 AIKPTMLMGTSGVGKT--------------FTKEVVEAMAS-FNEKPVIFALSNPTSQSECTAEEAYTWSKG--QAIFAS 497 (617)
Q Consensus 435 ~vkPtvLIG~S~~~g~--------------Fteevv~~Ma~-~~erPIIFaLSNPt~~aEct~edA~~wT~G--raifAS 497 (617)
. .|++|=+.+.+.- .=+++.+.+.+ .+..-||+-.|||- ....--+++++.. +-+|.|
T Consensus 176 d--aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPv---Dv~t~v~~k~sg~~~~rViGt 250 (444)
T PLN00112 176 D--AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPC---NTNALICLKNAPNIPAKNFHA 250 (444)
T ss_pred c--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcH---HHHHHHHHHHcCCCCcceEEe
Confidence 6 8888866666421 12467777888 58999999999997 2333334444311 235555
Q ss_pred CCC
Q 007112 498 GSP 500 (617)
Q Consensus 498 GSP 500 (617)
|.=
T Consensus 251 gT~ 253 (444)
T PLN00112 251 LTR 253 (444)
T ss_pred ecc
Confidence 543
No 304
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=56.22 E-value=50 Score=36.35 Aligned_cols=115 Identities=19% Similarity=0.189 Sum_probs=64.4
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchh--chhhhcccCCCCCHHHHH
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF--KKPWAHEHAPIKSLLDAV 433 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~--k~~fA~~~~~~~~L~eaV 433 (617)
+|-.|+|+|.|-.|+++|++|.+ .|. ++...|.+-- ....+.|... ..++.. ...+ .+.+
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~-----~G~-------~v~~~D~~~~--~~~~~~l~~~~~g~~~~~---~~~~-~~~~ 66 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLAR-----QGI-------PFAVMDSREQ--PPGLDTLAREFPDVELRC---GGFD-CELL 66 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHh-----CCC-------eEEEEeCCCC--chhHHHHHhhcCCcEEEe---CCCC-hHHh
Confidence 57789999999999998888764 363 5778886520 0000112110 011100 0011 2334
Q ss_pred hccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCeee
Q 007112 434 KAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGKVF 511 (617)
Q Consensus 434 ~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~GraifASGSPF~pv~~~Gk~~ 511 (617)
+ ++|++|=.++.+ --.+++.++.. ...||+ +.+|. ++.....+.|-.||| ||||-
T Consensus 67 ~--~~d~vV~sp~i~-~~~p~~~~a~~--~~i~i~-------~~~el----~~~~~~~~~I~VTGT-------~GKTT 121 (448)
T PRK03803 67 V--QASEIIISPGLA-LDTPALRAAAA--MGIEVI-------GDIEL----FAREAKAPVIAITGS-------NGKST 121 (448)
T ss_pred c--CCCEEEECCCCC-CCCHHHHHHHH--CCCcEE-------EHHHH----HHHhcCCCEEEEECC-------CcHHH
Confidence 4 478888666665 34677777654 456776 22333 222235678888997 77654
No 305
>PRK05993 short chain dehydrogenase; Provisional
Probab=55.94 E-value=28 Score=35.27 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=20.3
Q ss_pred CceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 357 DQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 357 d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
..++||.|| |..|..+|+.+ .+ .| -++++++++
T Consensus 4 ~k~vlItGasggiG~~la~~l----~~-~G-------~~Vi~~~r~ 37 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARAL----QS-DG-------WRVFATCRK 37 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHH----HH-CC-------CEEEEEECC
Confidence 357999998 44444455444 33 36 368888765
No 306
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=55.87 E-value=44 Score=35.88 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.7
Q ss_pred CCCceEEEeCcChHHHHHHHHHHH
Q 007112 355 LADQTFLFLGAGEAGTGIAELIAL 378 (617)
Q Consensus 355 l~d~riv~~GAGsAg~GIA~li~~ 378 (617)
|++.+|.|+|+|.-|-++|..+..
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~ 24 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRD 24 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHH
Confidence 578999999999999999999865
No 307
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=55.78 E-value=16 Score=38.89 Aligned_cols=39 Identities=23% Similarity=0.249 Sum_probs=28.4
Q ss_pred cCCcEEEeecCCCCCCCHHHHHHHHc--CCCCcEEEecCCCCC
Q 007112 436 IKPTMLMGTSGVGKTFTKEVVEAMAS--FNEKPVIFALSNPTS 476 (617)
Q Consensus 436 vkPtvLIG~S~~~g~Fteevv~~Ma~--~~erPIIFaLSNPt~ 476 (617)
-+-|++||+|..|. |+++++++.. ...-|+|.=-+||.+
T Consensus 130 ~~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~tI~IT~~~~s 170 (299)
T PRK05441 130 TAKDVVVGIAASGR--TPYVIGALEYARERGALTIGISCNPGS 170 (299)
T ss_pred CCCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 35799999999885 9999999853 334466665566763
No 308
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=55.63 E-value=71 Score=30.30 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=25.2
Q ss_pred CCcEEEeecCCCCCCCHHHHHHHH--cCCCCcEEEecCCCC
Q 007112 437 KPTMLMGTSGVGKTFTKEVVEAMA--SFNEKPVIFALSNPT 475 (617)
Q Consensus 437 kPtvLIG~S~~~g~Fteevv~~Ma--~~~erPIIFaLSNPt 475 (617)
+-|++|++|..| -|+++++.+. +...-|+|-=-+||.
T Consensus 79 ~~D~~i~iS~sG--~t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 79 KGDVLLGISTSG--NSKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCCEEEEEcCCC--CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 469999999987 5999988874 334455554444443
No 309
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=55.62 E-value=51 Score=33.12 Aligned_cols=78 Identities=13% Similarity=0.215 Sum_probs=43.8
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchh----chhhhc-ccCCCCCHHHH
Q 007112 359 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF----KKPWAH-EHAPIKSLLDA 432 (617)
Q Consensus 359 riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~----k~~fA~-~~~~~~~L~ea 432 (617)
+|+|.|| |..|-.+++.++.. |- ..+++.+|+... ..+.+.+... ...+-. +.....++.++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-----~~-----~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 68 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-----HP-----DAEVIVLDKLTY--AGNLENLADLEDNPRYRFVKGDIGDRELVSRL 68 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-----CC-----CCEEEEecCCCc--chhhhhhhhhccCCCcEEEEcCCcCHHHHHHH
Confidence 5788887 77887777776542 31 136777775311 0111111111 011111 22233468888
Q ss_pred HhccCCcEEEeecCCC
Q 007112 433 VKAIKPTMLMGTSGVG 448 (617)
Q Consensus 433 V~~vkPtvLIG~S~~~ 448 (617)
++..+||++|=+++..
T Consensus 69 ~~~~~~d~vi~~a~~~ 84 (317)
T TIGR01181 69 FTEHQPDAVVHFAAES 84 (317)
T ss_pred HhhcCCCEEEEccccc
Confidence 8888899999888753
No 310
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=55.59 E-value=13 Score=40.29 Aligned_cols=31 Identities=29% Similarity=0.490 Sum_probs=24.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+|+|+|||.||...|..+.. .|+ ++.++|++
T Consensus 2 ~VvIVGaGPAG~~aA~~la~-----~G~-------~V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLAS-----AGI-------QTFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 68999999999999988764 364 46666665
No 311
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=55.13 E-value=58 Score=38.56 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=41.6
Q ss_pred HHHHHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEE
Q 007112 317 ELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIW 396 (617)
Q Consensus 317 ~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~ 396 (617)
.+++||..++=-|+-... .++.|-. ..++.||+++|.|..|.-+.-.|+. .|+ .+|.
T Consensus 101 a~lERYaaqI~F~~~fs~----------s~~~rF~--~qR~akVlVlG~Gg~~s~lv~sL~~-----sG~------~~I~ 157 (637)
T TIGR03693 101 ALLDRYAAQIEFIEADAD----------SGALKFE--LSRNAKILAAGSGDFLTKLVRSLID-----SGF------PRFH 157 (637)
T ss_pred HHHHHHHHHHHHHHHhcc----------Cchhhhh--hhhcccEEEEecCchHHHHHHHHHh-----cCC------CcEE
Confidence 478999877655543321 1112221 2288999999999887777666654 486 7888
Q ss_pred EEccCCc
Q 007112 397 LVDSKGL 403 (617)
Q Consensus 397 lvD~~GL 403 (617)
.+|.+=.
T Consensus 158 ~vd~D~v 164 (637)
T TIGR03693 158 AIVTDAE 164 (637)
T ss_pred EEecccc
Confidence 8877644
No 312
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=54.99 E-value=12 Score=35.44 Aligned_cols=36 Identities=17% Similarity=0.317 Sum_probs=28.0
Q ss_pred EEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCc
Q 007112 361 LFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 403 (617)
Q Consensus 361 v~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GL 403 (617)
+|+|+|.+|+.+++.|+... . ....-+|.++|.++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-~------~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-D------PKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-C------CCCCCEEEEEcCCCc
Confidence 48999999999999998864 1 113468999999655
No 313
>PLN02240 UDP-glucose 4-epimerase
Probab=54.96 E-value=29 Score=36.02 Aligned_cols=107 Identities=17% Similarity=0.199 Sum_probs=59.6
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCch------hchhhhc-ccCC
Q 007112 354 TLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH------FKKPWAH-EHAP 425 (617)
Q Consensus 354 ~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~------~k~~fA~-~~~~ 425 (617)
.|+..+|+|.|| |--|-.+++.|++ .| .+++++|+..--.......+.. ....+.. +..+
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~-----~g-------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 69 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLL-----AG-------YKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRD 69 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHH-----CC-------CEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCC
Confidence 466789999997 7778777777754 24 3588887542100000000000 0011111 1122
Q ss_pred CCCHHHHHhccCCcEEEeecCCCCC----------------CCHHHHHHHHcCCCCcEEEecC
Q 007112 426 IKSLLDAVKAIKPTMLMGTSGVGKT----------------FTKEVVEAMASFNEKPVIFALS 472 (617)
Q Consensus 426 ~~~L~eaV~~vkPtvLIG~S~~~g~----------------Fteevv~~Ma~~~erPIIFaLS 472 (617)
..++.++++..+||++|=+.+.... -+..++++|.+.+-+.+||.=|
T Consensus 70 ~~~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 132 (352)
T PLN02240 70 KEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSS 132 (352)
T ss_pred HHHHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 2457777777789999987765321 1335677776666567887533
No 314
>PRK06138 short chain dehydrogenase; Provisional
Probab=54.46 E-value=30 Score=33.77 Aligned_cols=77 Identities=17% Similarity=0.312 Sum_probs=41.2
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchh--------hhc-ccC
Q 007112 354 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKP--------WAH-EHA 424 (617)
Q Consensus 354 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~--------fA~-~~~ 424 (617)
.|++.++||.||.. ||...|+..+.+ .| -++++++++. . .+...+.. +.+ +..
T Consensus 2 ~~~~k~~lItG~sg---~iG~~la~~l~~-~G-------~~v~~~~r~~----~---~~~~~~~~~~~~~~~~~~~~D~~ 63 (252)
T PRK06138 2 RLAGRVAIVTGAGS---GIGRATAKLFAR-EG-------ARVVVADRDA----E---AAERVAAAIAAGGRAFARQGDVG 63 (252)
T ss_pred CCCCcEEEEeCCCc---hHHHHHHHHHHH-CC-------CeEEEecCCH----H---HHHHHHHHHhcCCeEEEEEcCCC
Confidence 46778999999842 344455554444 25 3588887651 1 11111111 111 112
Q ss_pred CCCCHHHHHhcc-----CCcEEEeecCCC
Q 007112 425 PIKSLLDAVKAI-----KPTMLMGTSGVG 448 (617)
Q Consensus 425 ~~~~L~eaV~~v-----kPtvLIG~S~~~ 448 (617)
+..++.++++.+ ++|++|=+.+..
T Consensus 64 ~~~~~~~~~~~i~~~~~~id~vi~~ag~~ 92 (252)
T PRK06138 64 SAEAVEALVDFVAARWGRLDVLVNNAGFG 92 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 223566666654 789999877753
No 315
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=54.36 E-value=13 Score=40.88 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=25.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
||||+|+|.||+..|+.|.+. +- .-+|.++|+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~-----~~-----~~~I~li~~~ 35 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRL-----DK-----ESDIIIFEKD 35 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhh-----CC-----CCCEEEEECC
Confidence 899999999999999999642 10 1357777765
No 316
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=54.17 E-value=15 Score=39.38 Aligned_cols=31 Identities=23% Similarity=0.366 Sum_probs=23.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
.|+|+|||.||...|..+.+. |+ ++.++|++
T Consensus 2 DVvIVGaGpAG~~aA~~La~~-----G~-------~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARA-----GI-------ETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhC-----CC-------cEEEEECC
Confidence 489999999999999887643 54 46666665
No 317
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=54.05 E-value=32 Score=35.73 Aligned_cols=98 Identities=11% Similarity=0.101 Sum_probs=50.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccC-CCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhcc
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTK-APIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAI 436 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G-~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~v 436 (617)
+||.|+|+|.-|..+|..+... | ++ ..+++++|++. . +.+......+. ......+..++++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~-----g~~~----~~~V~~~~r~~---~---~~~~~l~~~~~-~~~~~~~~~e~~~~- 64 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLET-----EVAT----PEEIILYSSSK---N---EHFNQLYDKYP-TVELADNEAEIFTK- 64 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CCCC----cccEEEEeCCc---H---HHHHHHHHHcC-CeEEeCCHHHHHhh-
Confidence 4799999999999999988653 4 21 24677777631 0 11111111110 00112455566654
Q ss_pred CCcEEEeecCCCCCCCHHHHHHHHcC-CCCcEEEecCCCC
Q 007112 437 KPTMLMGTSGVGKTFTKEVVEAMASF-NEKPVIFALSNPT 475 (617)
Q Consensus 437 kPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPt 475 (617)
+|++| ++..+ ...+++++.+..+ .+..+|..++|-.
T Consensus 65 -aDvVi-lavpp-~~~~~vl~~l~~~l~~~~~ivS~~aGi 101 (277)
T PRK06928 65 -CDHSF-ICVPP-LAVLPLLKDCAPVLTPDRHVVSIAAGV 101 (277)
T ss_pred -CCEEE-EecCH-HHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 66665 44333 3455666655432 2333455555544
No 318
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=53.75 E-value=18 Score=38.88 Aligned_cols=45 Identities=27% Similarity=0.358 Sum_probs=41.6
Q ss_pred cchhHHHHHHHHHHHHHhCCCCCCceEEEeCc-ChHHHHHHHHHHH
Q 007112 334 QGTASVVLAGILSALKLVGGTLADQTFLFLGA-GEAGTGIAELIAL 378 (617)
Q Consensus 334 QGTaaV~LAgll~Alr~~g~~l~d~riv~~GA-GsAg~GIA~li~~ 378 (617)
-+||-++.-+++-+...+|.+|++.++-|+|| |..|.+||+.|.-
T Consensus 144 s~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~ 189 (351)
T COG5322 144 SHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAP 189 (351)
T ss_pred ccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhcc
Confidence 47899999999999999999999999999998 8999999999864
No 319
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=53.59 E-value=52 Score=35.87 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=22.2
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHH
Q 007112 354 TLADQTFLFLGAGEAGTGIAELIAL 378 (617)
Q Consensus 354 ~l~d~riv~~GAGsAg~GIA~li~~ 378 (617)
.|++.+|.|+|.|+.|.++|..|..
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~ 38 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRD 38 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHH
Confidence 4678899999999999999999864
No 320
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.56 E-value=20 Score=39.77 Aligned_cols=29 Identities=14% Similarity=0.123 Sum_probs=24.2
Q ss_pred HhCCCCCCceEEEeCcChHHHHHHHHHHH
Q 007112 350 LVGGTLADQTFLFLGAGEAGTGIAELIAL 378 (617)
Q Consensus 350 ~~g~~l~d~riv~~GAGsAg~GIA~li~~ 378 (617)
..|.+++.++++|+|+|.+|+.+|+.+.+
T Consensus 9 ~~~~~~~~~~v~viG~G~~G~~~A~~L~~ 37 (480)
T PRK01438 9 SWHSDWQGLRVVVAGLGVSGFAAADALLE 37 (480)
T ss_pred hcccCcCCCEEEEECCCHHHHHHHHHHHH
Confidence 34556788899999999999999988864
No 321
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.52 E-value=65 Score=36.27 Aligned_cols=89 Identities=15% Similarity=0.210 Sum_probs=50.3
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHh
Q 007112 355 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVK 434 (617)
Q Consensus 355 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~ 434 (617)
+.++|++|+|.|..|+..++++.. .|. ++.+.|.+ ..+ +...++.-++ ........+.++
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~-----~G~-------~v~~~D~~----~~~---~~~l~~~g~~-~~~~~~~~~~l~ 69 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTR-----FGA-------RPTVCDDD----PDA---LRPHAERGVA-TVSTSDAVQQIA 69 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHH-----CCC-------EEEEEcCC----HHH---HHHHHhCCCE-EEcCcchHhHhh
Confidence 356899999999999999976653 363 57778854 111 1111110000 001112334455
Q ss_pred ccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEE
Q 007112 435 AIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVI 468 (617)
Q Consensus 435 ~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPII 468 (617)
. .|++|=.++.+ .-++++.++.. ..-||+
T Consensus 70 ~--~D~VV~SpGi~-~~~p~~~~a~~--~gi~v~ 98 (488)
T PRK03369 70 D--YALVVTSPGFR-PTAPVLAAAAA--AGVPIW 98 (488)
T ss_pred c--CCEEEECCCCC-CCCHHHHHHHH--CCCcEe
Confidence 4 78888777766 34566655544 356776
No 322
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=52.94 E-value=20 Score=36.36 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=27.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCc
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 403 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GL 403 (617)
.|+|+|||-+|+.+|-.|.+ .| .++.++|+..+
T Consensus 1 DvvIIGaGi~G~~~A~~La~-----~G-------~~V~l~e~~~~ 33 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-----RG-------HSVTLLERGDI 33 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-----TT-------SEEEEEESSST
T ss_pred CEEEECcCHHHHHHHHHHHH-----CC-------CeEEEEeeccc
Confidence 48999999999999998876 36 47999999833
No 323
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=52.70 E-value=50 Score=32.44 Aligned_cols=76 Identities=16% Similarity=0.230 Sum_probs=41.0
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhh---------c-c
Q 007112 354 TLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWA---------H-E 422 (617)
Q Consensus 354 ~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA---------~-~ 422 (617)
.++..+++|.|| |..|..+++.++ + .|. +++++++.- .+ +......+. + +
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~----~-~G~-------~v~~~~r~~----~~---~~~~~~~~~~~~~~~~~~~~D 64 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELA----R-AGA-------AVAIADLNQ----DG---ANAVADEINKAGGKAIGVAMD 64 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHH----H-CCC-------eEEEEeCCh----HH---HHHHHHHHHhcCceEEEEECC
Confidence 356788999998 545555555553 3 363 577777641 11 111111111 1 1
Q ss_pred cCCCCCHHHHHhcc-----CCcEEEeecCCC
Q 007112 423 HAPIKSLLDAVKAI-----KPTMLMGTSGVG 448 (617)
Q Consensus 423 ~~~~~~L~eaV~~v-----kPtvLIG~S~~~ 448 (617)
..+..++.++++.+ ++|++|-+.+..
T Consensus 65 l~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 95 (262)
T PRK13394 65 VTNEDAVNAGIDKVAERFGSVDILVSNAGIQ 95 (262)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCccC
Confidence 12223566666654 389999988764
No 324
>PRK06184 hypothetical protein; Provisional
Probab=52.68 E-value=18 Score=40.40 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=27.3
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCC
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 402 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~G 402 (617)
++..|+|+|||.+|+..|-+|.+ .|+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~-----~Gi-------~v~viE~~~ 36 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELAR-----RGV-------SFRLIEKAP 36 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCCC
Confidence 45789999999999999988765 375 467777753
No 325
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=52.50 E-value=27 Score=39.87 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=27.8
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 354 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 354 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+-.+.+|+|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~-----~G~-------~V~v~e~~ 169 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRR-----MGH-------AVTIFEAG 169 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 3457899999999999999887754 353 47888864
No 326
>PRK12829 short chain dehydrogenase; Provisional
Probab=52.35 E-value=35 Score=33.61 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=23.9
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 354 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 354 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
.+++.+++|.||.. ||...++..+.+ .|. ++++++++
T Consensus 8 ~~~~~~vlItGa~g---~iG~~~a~~L~~-~g~-------~V~~~~r~ 44 (264)
T PRK12829 8 PLDGLRVLVTGGAS---GIGRAIAEAFAE-AGA-------RVHVCDVS 44 (264)
T ss_pred ccCCCEEEEeCCCC---cHHHHHHHHHHH-CCC-------EEEEEeCC
Confidence 37889999999842 344555555443 363 58888764
No 327
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.05 E-value=67 Score=35.17 Aligned_cols=114 Identities=24% Similarity=0.304 Sum_probs=62.8
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhc
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKA 435 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~ 435 (617)
..++|+|+|.|-.|..+|+.+.+ .|. +++.+|.+- . .+.. ..+..+. ......+..+
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~-----~G~-------~V~g~D~~~----~---~~~~--~~~~~~~-~~~~~~~~~~- 58 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQ-----KGV-------YVIGVDKSL----E---ALQS--CPYIHER-YLENAEEFPE- 58 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHH-----CCC-------EEEEEeCCc----c---ccch--hHHHhhh-hcCCcHHHhc-
Confidence 34789999999999888777653 363 588888651 1 1111 1111110 0111222223
Q ss_pred cCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCeee
Q 007112 436 IKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGKVF 511 (617)
Q Consensus 436 vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~GraifASGSPF~pv~~~Gk~~ 511 (617)
+++++|-..+.+ .-.+.+.++..+. -||| |++. . +-++..+.+.+.|-.||| +|||-
T Consensus 59 -~~dlvV~s~gi~-~~~~~l~~A~~~g--~~vv---~~~~----~-~~~~~~~~~~~~I~ITGT-------~GKTT 115 (418)
T PRK00683 59 -QVDLVVRSPGIK-KEHPWVQAAIASH--IPVV---TDIQ----L-AFQTPEFTRYPSLGITGS-------TGKTT 115 (418)
T ss_pred -CCCEEEECCCCC-CCcHHHHHHHHCC--CcEE---EHHH----H-HHhhhhcCCCCEEEEECC-------CChHH
Confidence 378899888776 4566666666543 3432 3321 1 112222224577888998 77754
No 328
>PRK07236 hypothetical protein; Provisional
Probab=51.96 E-value=21 Score=38.15 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=21.2
Q ss_pred CCCceEEEeCcChHHHHHHHHHHH
Q 007112 355 LADQTFLFLGAGEAGTGIAELIAL 378 (617)
Q Consensus 355 l~d~riv~~GAGsAg~GIA~li~~ 378 (617)
++..+|+|+|||.||+..|..|.+
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~ 27 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRR 27 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHh
Confidence 456899999999999999998876
No 329
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=51.88 E-value=27 Score=36.23 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=28.6
Q ss_pred cCCcEEEeecCCCCCCCHHHHHHHH--cCCCCcEEEecCCCC
Q 007112 436 IKPTMLMGTSGVGKTFTKEVVEAMA--SFNEKPVIFALSNPT 475 (617)
Q Consensus 436 vkPtvLIG~S~~~g~Fteevv~~Ma--~~~erPIIFaLSNPt 475 (617)
-+-|++||+|..|. |+++++++. +...-|+|.=-+||.
T Consensus 117 ~~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~~I~It~~~~ 156 (257)
T cd05007 117 TERDVVIGIAASGR--TPYVLGALRYARARGALTIGIACNPG 156 (257)
T ss_pred CCCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 35799999999886 899998875 344557766666776
No 330
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=51.81 E-value=19 Score=37.72 Aligned_cols=22 Identities=45% Similarity=0.628 Sum_probs=19.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHH
Q 007112 358 QTFLFLGAGEAGTGIAELIALE 379 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~ 379 (617)
.||.|+|||..|.|||.+++.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~ 27 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA 27 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC
Confidence 4899999999999999988754
No 331
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=51.26 E-value=29 Score=30.45 Aligned_cols=90 Identities=11% Similarity=0.142 Sum_probs=52.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCC
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKP 438 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkP 438 (617)
||.|+|+|..|......+...- .+. +=..++|.+ . +....+.+.|-- +...++.|.++.-++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~---~~~------~v~~v~d~~----~---~~~~~~~~~~~~--~~~~~~~~ll~~~~~ 63 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSS---PDF------EVVAVCDPD----P---ERAEAFAEKYGI--PVYTDLEELLADEDV 63 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT---TTE------EEEEEECSS----H---HHHHHHHHHTTS--EEESSHHHHHHHTTE
T ss_pred EEEEECCcHHHHHHHHHHHhcC---CCc------EEEEEEeCC----H---HHHHHHHHHhcc--cchhHHHHHHHhhcC
Confidence 7999999999777655554320 111 234566664 1 112222223322 245789999998889
Q ss_pred cEEEeecCCCCCCCHHHHHHHHcCCCCcEEE
Q 007112 439 TMLMGTSGVGKTFTKEVVEAMASFNEKPVIF 469 (617)
Q Consensus 439 tvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 469 (617)
|+++ +++.. ....++++...+... ||+.
T Consensus 64 D~V~-I~tp~-~~h~~~~~~~l~~g~-~v~~ 91 (120)
T PF01408_consen 64 DAVI-IATPP-SSHAEIAKKALEAGK-HVLV 91 (120)
T ss_dssp SEEE-EESSG-GGHHHHHHHHHHTTS-EEEE
T ss_pred CEEE-EecCC-cchHHHHHHHHHcCC-EEEE
Confidence 9988 55544 456666666554333 5554
No 332
>PRK06182 short chain dehydrogenase; Validated
Probab=51.00 E-value=28 Score=34.97 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=38.6
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhh-hcccCCCCCHHHHHh
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPW-AHEHAPIKSLLDAVK 434 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~f-A~~~~~~~~L~eaV~ 434 (617)
+..++||.||++ ||...++..+.+ .| -++++++++- ++.+.+......+ .-|..+..++.++++
T Consensus 2 ~~k~vlItGasg---giG~~la~~l~~-~G-------~~V~~~~r~~----~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~ 66 (273)
T PRK06182 2 QKKVALVTGASS---GIGKATARRLAA-QG-------YTVYGAARRV----DKMEDLASLGVHPLSLDVTDEASIKAAVD 66 (273)
T ss_pred CCCEEEEECCCC---hHHHHHHHHHHH-CC-------CEEEEEeCCH----HHHHHHHhCCCeEEEeeCCCHHHHHHHHH
Confidence 457899999732 333344444433 35 3577776641 1100011111111 112222335666666
Q ss_pred cc-----CCcEEEeecCCC
Q 007112 435 AI-----KPTMLMGTSGVG 448 (617)
Q Consensus 435 ~v-----kPtvLIG~S~~~ 448 (617)
.+ ++|+||=..+..
T Consensus 67 ~~~~~~~~id~li~~ag~~ 85 (273)
T PRK06182 67 TIIAEEGRIDVLVNNAGYG 85 (273)
T ss_pred HHHHhcCCCCEEEECCCcC
Confidence 44 799999877654
No 333
>PRK06847 hypothetical protein; Provisional
Probab=50.74 E-value=20 Score=37.59 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.2
Q ss_pred CceEEEeCcChHHHHHHHHHHH
Q 007112 357 DQTFLFLGAGEAGTGIAELIAL 378 (617)
Q Consensus 357 d~riv~~GAGsAg~GIA~li~~ 378 (617)
..+|+|+|||.||+..|..+.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~ 25 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRR 25 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHh
Confidence 4689999999999999988764
No 334
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=50.66 E-value=22 Score=39.36 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=28.9
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 354 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 354 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+.+..+|+|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~-----~G-------~~V~vie~~ 165 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAK-----AG-------HSVTVFEAL 165 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEecC
Confidence 4567899999999999999988864 25 368888874
No 335
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=50.25 E-value=57 Score=33.75 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=24.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
||-|+|+|..|.++|..+... |. +++++|++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-----G~-------~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-----GY-------QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 588999999999999998753 53 57777865
No 336
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=50.13 E-value=16 Score=38.98 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=26.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCC
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 402 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~G 402 (617)
.+|||+|+|.||+..|+.|... + ..-+|.+++++.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~-----~-----~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ-----D-----AHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh-----C-----cCCCEEEEeCCC
Confidence 4899999999999999988542 1 124688887654
No 337
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=50.06 E-value=51 Score=35.41 Aligned_cols=97 Identities=15% Similarity=0.073 Sum_probs=57.9
Q ss_pred CCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchh--chhhhc-ccCCCCCHHH
Q 007112 356 ADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF--KKPWAH-EHAPIKSLLD 431 (617)
Q Consensus 356 ~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~--k~~fA~-~~~~~~~L~e 431 (617)
+++||+|.|+ |-.|..+++.|.+ .| -+++.+|+..-- .+... ...|-. +..+..++.+
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~-----~G-------~~V~~v~r~~~~------~~~~~~~~~~~~~~Dl~d~~~~~~ 81 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKA-----EG-------HYIIASDWKKNE------HMSEDMFCHEFHLVDLRVMENCLK 81 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHh-----CC-------CEEEEEEecccc------ccccccccceEEECCCCCHHHHHH
Confidence 4589999998 9999888888865 25 368888874310 01110 111111 1112233555
Q ss_pred HHhccCCcEEEeecCCCC--C---------------CCHHHHHHHHcCCCCcEEEecC
Q 007112 432 AVKAIKPTMLMGTSGVGK--T---------------FTKEVVEAMASFNEKPVIFALS 472 (617)
Q Consensus 432 aV~~vkPtvLIG~S~~~g--~---------------Fteevv~~Ma~~~erPIIFaLS 472 (617)
+++ ++|++|=+.+..+ - .|..+++++.+..-+.+||.=|
T Consensus 82 ~~~--~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 82 VTK--GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred HHh--CCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 555 5899998875431 1 2456778877776678998654
No 338
>PRK07233 hypothetical protein; Provisional
Probab=50.02 E-value=18 Score=38.55 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=25.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
||+|+|||-||+..|..|.+. | .++.+++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-----G-------~~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-----G-------HEVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEEeC
Confidence 689999999999999888653 5 367888776
No 339
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=50.00 E-value=29 Score=38.26 Aligned_cols=111 Identities=21% Similarity=0.261 Sum_probs=62.2
Q ss_pred eEEEeCcChHHHH-HHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccC
Q 007112 359 TFLFLGAGEAGTG-IAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIK 437 (617)
Q Consensus 359 riv~~GAGsAg~G-IA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vk 437 (617)
+|.|+|.|-+|++ +|++|.+ .|. ++...|.+--- ..+.|......+- .. .+ .+.++ +
T Consensus 1 ~~~~iGiggsGm~~la~~L~~-----~G~-------~v~~~D~~~~~---~~~~l~~~gi~~~---~g-~~-~~~~~--~ 58 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLN-----RGY-------QVSGSDIAENA---TTKRLEALGIPIY---IG-HS-AENLD--D 58 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHH-----CCC-------eEEEECCCcch---HHHHHHHCcCEEe---CC-CC-HHHCC--C
Confidence 5899999999998 8988865 363 57788864211 1111221111110 01 11 12333 3
Q ss_pred CcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc-cCcEEEeeCCCCCcceeCCeeec
Q 007112 438 PTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWS-KGQAIFASGSPFDPVEYNGKVFV 512 (617)
Q Consensus 438 PtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT-~GraifASGSPF~pv~~~Gk~~~ 512 (617)
+|.+|=.++.+ --++++.++.. ..-||+ +.+|. ++++. +.+.|-.||| ||||-+
T Consensus 59 ~d~vV~spgi~-~~~p~~~~a~~--~~i~v~-------~~~el----~~~~~~~~~~IaITGT-------nGKTTT 113 (448)
T TIGR01082 59 ADVVVVSAAIK-DDNPEIVEAKE--RGIPVI-------RRAEM----LAELMRFRHSIAVAGT-------HGKTTT 113 (448)
T ss_pred CCEEEECCCCC-CCCHHHHHHHH--cCCceE-------eHHHH----HHHHHhcCcEEEEECC-------CChHHH
Confidence 88888666666 35677777665 356775 33333 22332 3467888887 776543
No 340
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=49.41 E-value=17 Score=39.41 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=28.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcc
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI 404 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi 404 (617)
.||||+|+|.||+..|..+.+. |- .-+|.++|++.-+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~-----~~-----~~~Vtli~~~~~~ 37 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRL-----NK-----ELEITVYEKTDIV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHH-----CC-----CCcEEEEECCCcc
Confidence 3899999999999999987542 21 1378899987543
No 341
>PRK09126 hypothetical protein; Provisional
Probab=49.38 E-value=20 Score=37.91 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.1
Q ss_pred CceEEEeCcChHHHHHHHHHHH
Q 007112 357 DQTFLFLGAGEAGTGIAELIAL 378 (617)
Q Consensus 357 d~riv~~GAGsAg~GIA~li~~ 378 (617)
+..|+|+|||.||+..|-.|.+
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~ 24 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAG 24 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHh
Confidence 4579999999999999988865
No 342
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=49.28 E-value=70 Score=32.24 Aligned_cols=97 Identities=18% Similarity=0.196 Sum_probs=51.4
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhc----hhhhc-ccCCCCCHHHH
Q 007112 359 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFK----KPWAH-EHAPIKSLLDA 432 (617)
Q Consensus 359 riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k----~~fA~-~~~~~~~L~ea 432 (617)
||++.|| |..|..+++.+.+ .| .+++++|+. .......+.... ..+.. +.....++.++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~-----~g-------~~V~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 65 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLE-----SG-------HEVVVLDNL---SNGSPEALKRGERITRVTFVEGDLRDRELLDRL 65 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHh-----CC-------CeEEEEeCC---CccchhhhhhhccccceEEEECCCCCHHHHHHH
Confidence 5788875 7677777666653 24 356677642 111111111110 01111 22223467788
Q ss_pred HhccCCcEEEeecCCCCCC----------------CHHHHHHHHcCCCCcEEEe
Q 007112 433 VKAIKPTMLMGTSGVGKTF----------------TKEVVEAMASFNEKPVIFA 470 (617)
Q Consensus 433 V~~vkPtvLIG~S~~~g~F----------------teevv~~Ma~~~erPIIFa 470 (617)
++..++|++|=+.+..... +..++++|.+..-+.+||.
T Consensus 66 ~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ 119 (328)
T TIGR01179 66 FEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFS 119 (328)
T ss_pred HHhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEe
Confidence 8777899999665543111 2456677776655677773
No 343
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=49.24 E-value=1.1e+02 Score=29.36 Aligned_cols=112 Identities=18% Similarity=0.196 Sum_probs=60.6
Q ss_pred eeecCCCCCCCcccchhhhHHHHhhhcCCCCCceeeEEeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHH
Q 007112 218 RILGLGDLGCQGMGIPVGKLSLYTALGGLRPSACLPITIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQ 297 (617)
Q Consensus 218 rILGLGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~DplYlG~r~~R~~g~eY~~fidefv~av~~ 297 (617)
||||+ |.|....|..+-.. ..--|-.+|.|+=+. ..+....+....+.+++. .+..
T Consensus 1 rILGI-DPGl~~~G~av~~~-----------~~~~~~~~~~g~i~t-----------~~~~~~~~rl~~I~~~l~-~~i~ 56 (154)
T cd00529 1 RILGI-DPGSRNTGYGVIEQ-----------EGRKLIYLASGVIRT-----------SSDAPLPSRLKTIYDGLN-EVID 56 (154)
T ss_pred CEEEE-ccCcCceEEEEEEe-----------eCCeEEEEEeeEEEC-----------CCCCCHHHHHHHHHHHHH-HHHH
Confidence 56776 77776555554221 112356677775322 122223445555444444 4446
Q ss_pred hcCCCeeeeeec-CCCCcHHHHHHHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCC-----CceEEEeCcChHHH
Q 007112 298 NYGEKVLIQFED-FANHNAFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLA-----DQTFLFLGAGEAGT 370 (617)
Q Consensus 298 ~fGp~~lIqfED-f~~~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~-----d~riv~~GAGsAg~ 370 (617)
.|-|+ .+-.|+ |-+.|.-..+.- .-+-..++.++...|.++. .-|-.+.|.|.|.-
T Consensus 57 ~~~Pd-~vaiE~~~~~~n~~s~~~l----------------~~~~Gvi~~~~~~~~i~v~e~~P~~vKk~~tG~G~A~K 118 (154)
T cd00529 57 QFQPD-VVAIERVFFAKNPDSALKL----------------GQARGALILALANRNLPVFEYTPNQVKKAVTGYGKADK 118 (154)
T ss_pred HhCCC-EEEEEEhhcccChHHHHHH----------------HHHHHHHHHHHHHcCCCEEEEccCeeEEEEECCCCCCH
Confidence 78786 567888 334442222110 1134556666677777754 45777889998875
No 344
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=49.23 E-value=25 Score=38.49 Aligned_cols=86 Identities=12% Similarity=0.126 Sum_probs=47.3
Q ss_pred HHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhh----
Q 007112 345 LSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWA---- 420 (617)
Q Consensus 345 l~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA---- 420 (617)
..++.-....|.+.|++++|.+.-..++++++.+ .|+. +..+-+. .... +.....+..+.
T Consensus 275 ~~~l~~~~~~l~gkrv~i~~~~~~~~~la~~l~e-----lGm~-------v~~~~~~---~~~~-~~~~~~~~~~~~~~~ 338 (410)
T cd01968 275 RPELAPYRARLEGKKAALYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTK-EDYERIKELLGEGTV 338 (410)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEecc---cCCH-HHHHHHHHHhCCCcE
Confidence 3344444456778999999988888999987643 4873 2223111 1111 11111111110
Q ss_pred -cccCCCCCHHHHHhccCCcEEEeecC
Q 007112 421 -HEHAPIKSLLDAVKAIKPTMLMGTSG 446 (617)
Q Consensus 421 -~~~~~~~~L~eaV~~vkPtvLIG~S~ 446 (617)
....+...+.+.++..+||++||-|.
T Consensus 339 v~~~~~~~e~~~~i~~~~pDl~ig~s~ 365 (410)
T cd01968 339 IVDDANPRELKKLLKEKKADLLVAGGK 365 (410)
T ss_pred EEeCCCHHHHHHHHhhcCCCEEEECCc
Confidence 00111124678889999999999754
No 345
>PRK13937 phosphoheptose isomerase; Provisional
Probab=48.80 E-value=64 Score=31.70 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=18.6
Q ss_pred CCcEEEeecCCCCCCCHHHHHHHH
Q 007112 437 KPTMLMGTSGVGKTFTKEVVEAMA 460 (617)
Q Consensus 437 kPtvLIG~S~~~g~Fteevv~~Ma 460 (617)
+-|++|++|..|. |+++++.+.
T Consensus 106 ~~Dl~i~iS~sG~--t~~~~~~~~ 127 (188)
T PRK13937 106 PGDVLIGISTSGN--SPNVLAALE 127 (188)
T ss_pred CCCEEEEEeCCCC--cHHHHHHHH
Confidence 4699999999874 999998874
No 346
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=48.77 E-value=28 Score=39.55 Aligned_cols=104 Identities=20% Similarity=0.339 Sum_probs=64.2
Q ss_pred CCCCcccchhhhHHHHhhhcCCCCCceeeEEe-ecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhcCCCe
Q 007112 225 LGCQGMGIPVGKLSLYTALGGLRPSACLPITI-DVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKV 303 (617)
Q Consensus 225 lG~~GmgI~iGKl~LYta~gGI~P~~~LPI~L-DvGTnNe~LL~DplYlG~r~~R~~g~eY~~fidefv~av~~~fGp~~ 303 (617)
.|+-|. ||+++-.|.|+-==-...-+.| .|+.| .+ +...+.+ .= ++-
T Consensus 241 YGPPGT----GKSS~IaAmAn~L~ydIydLeLt~v~~n-~d-----------------------Lr~LL~~---t~-~kS 288 (457)
T KOG0743|consen 241 YGPPGT----GKSSFIAAMANYLNYDIYDLELTEVKLD-SD-----------------------LRHLLLA---TP-NKS 288 (457)
T ss_pred eCCCCC----CHHHHHHHHHhhcCCceEEeeeccccCc-HH-----------------------HHHHHHh---CC-CCc
Confidence 466553 7999999999865233555566 56643 21 2333332 22 778
Q ss_pred eeeeecCCCCcHHHHHHHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCc
Q 007112 304 LIQFEDFANHNAFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGA 365 (617)
Q Consensus 304 lIqfEDf~~~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GA 365 (617)
+|-.|||.. +|.+=++-..+-.-|.+ .-.-|+|.||||++--.-..=.+.||+|+=.
T Consensus 289 IivIEDIDc--s~~l~~~~~~~~~~~~~---~~~~VTlSGLLNfiDGlwSscg~ERIivFTT 345 (457)
T KOG0743|consen 289 ILLIEDIDC--SFDLRERRKKKKENFEG---DLSRVTLSGLLNFLDGLWSSCGDERIIVFTT 345 (457)
T ss_pred EEEEeeccc--ccccccccccccccccC---CcceeehHHhhhhhccccccCCCceEEEEec
Confidence 999999964 45544443333333333 4667999999999764444445677777653
No 347
>PRK08163 salicylate hydroxylase; Provisional
Probab=48.38 E-value=22 Score=37.68 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.0
Q ss_pred CceEEEeCcChHHHHHHHHHHH
Q 007112 357 DQTFLFLGAGEAGTGIAELIAL 378 (617)
Q Consensus 357 d~riv~~GAGsAg~GIA~li~~ 378 (617)
..+|+|+|||.||+..|-.|..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~ 25 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR 25 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh
Confidence 4689999999999999987754
No 348
>PRK06392 homoserine dehydrogenase; Provisional
Probab=48.37 E-value=68 Score=34.72 Aligned_cols=82 Identities=13% Similarity=0.242 Sum_probs=48.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHH-hccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc----cCCCC--CHHH
Q 007112 359 TFLFLGAGEAGTGIAELIALEMS-KQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE----HAPIK--SLLD 431 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~-~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~----~~~~~--~L~e 431 (617)
||.++|.|..|-+++++|.+.-. ++.|+. -+=+-+.|++|-+...+.=++.+... +... ..... ++.+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~----l~VVaVsds~g~l~~~~Gldl~~l~~-~~~~g~l~~~~~~~~~~~~ 76 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNG----ISVVSVSDSKLSYYNERGLDIGKIIS-YKEKGRLEEIDYEKIKFDE 76 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCC----eEEEEEEECCCcccCCcCCChHHHHH-HHhcCccccCCCCcCCHHH
Confidence 79999999999999999865210 112321 12255679999888765312222111 1110 01112 5666
Q ss_pred HHhccCCcEEEeecC
Q 007112 432 AVKAIKPTMLMGTSG 446 (617)
Q Consensus 432 aV~~vkPtvLIG~S~ 446 (617)
.++ .+|||+|=+++
T Consensus 77 ll~-~~~DVvVE~t~ 90 (326)
T PRK06392 77 IFE-IKPDVIVDVTP 90 (326)
T ss_pred Hhc-CCCCEEEECCC
Confidence 665 68999999874
No 349
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=48.35 E-value=16 Score=37.26 Aligned_cols=56 Identities=29% Similarity=0.347 Sum_probs=42.5
Q ss_pred HHHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEE
Q 007112 319 LSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLV 398 (617)
Q Consensus 319 L~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lv 398 (617)
++||..++....-.. +- -++|++-|++++|+|.-|.-+++.++.+ |+ ++++++
T Consensus 8 ~~ry~Rqi~l~~~~~---------------~~-q~~l~~s~vlvvG~GglG~~~~~~la~a-----Gv------g~l~i~ 60 (254)
T COG0476 8 IERYSRQILLPGIGG---------------EG-QQKLKDSRVLVVGAGGLGSPAAKYLALA-----GV------GKLTIV 60 (254)
T ss_pred HHhhcceeeecccCH---------------HH-HHHHhhCCEEEEecChhHHHHHHHHHHc-----CC------CeEEEE
Confidence 467777766654433 11 3568889999999999999999999875 65 569999
Q ss_pred ccC
Q 007112 399 DSK 401 (617)
Q Consensus 399 D~~ 401 (617)
|.+
T Consensus 61 D~d 63 (254)
T COG0476 61 DFD 63 (254)
T ss_pred cCC
Confidence 987
No 350
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=48.32 E-value=23 Score=38.34 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=26.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcc
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI 404 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi 404 (617)
-.|+|+|||.||...|..+.+. |+ ++.++|++..+
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~-----G~-------~VlvlEk~~~~ 38 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKA-----GL-------DVLVLEKGSEP 38 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHc-----CC-------eEEEEecCCCC
Confidence 4689999999999999998764 53 46666665444
No 351
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=48.13 E-value=23 Score=41.27 Aligned_cols=35 Identities=26% Similarity=0.423 Sum_probs=28.1
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 355 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 355 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
-.+.+|+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~-----~G~-------~V~V~E~~ 359 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLAR-----NGV-------AVTVYDRH 359 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 357899999999999999988865 253 47788875
No 352
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=48.04 E-value=59 Score=32.10 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=23.7
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 354 TLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 354 ~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
++++++++|.|| |..|..+|+.++ + .|. ++.++|++
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~----~-~G~-------~V~~~~r~ 43 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLA----Q-AGA-------EVILNGRD 43 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHH----H-cCC-------EEEEEeCC
Confidence 577899999997 555555555554 3 363 57777764
No 353
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=48.02 E-value=25 Score=39.20 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=27.6
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
.+.+++|+|||.||+..|..+.. .| .++.++|+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~-----~G-------~~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLAR-----AG-------HKVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh-----CC-------CcEEEEecC
Confidence 46799999999999999888764 25 358889875
No 354
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=47.85 E-value=22 Score=39.04 Aligned_cols=40 Identities=25% Similarity=0.430 Sum_probs=33.7
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCc
Q 007112 353 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 403 (617)
Q Consensus 353 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GL 403 (617)
.+|++|=||++|||..|--++++|+.. |+ .+|-+||-+-.
T Consensus 70 ~kl~~syVVVVG~GgVGSwv~nmL~RS-----G~------qKi~iVDfdqV 109 (430)
T KOG2018|consen 70 EKLTNSYVVVVGAGGVGSWVANMLLRS-----GV------QKIRIVDFDQV 109 (430)
T ss_pred HHhcCcEEEEEecCchhHHHHHHHHHh-----cC------ceEEEechhhc
Confidence 367889999999999999999999864 75 78888987644
No 355
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=47.43 E-value=2.7e+02 Score=33.30 Aligned_cols=107 Identities=14% Similarity=0.047 Sum_probs=57.4
Q ss_pred HHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCC--------CCCCHHHHhccccCcEEEeeCCCCC
Q 007112 431 DAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQ--------SECTAEEAYTWSKGQAIFASGSPFD 502 (617)
Q Consensus 431 eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~--------aEct~edA~~wT~GraifASGSPF~ 502 (617)
+.=+.++|+++|..++.+ +.-.-+.....+-+|=|.+=.-||... .+-|-+++.++... |+..-=..
T Consensus 410 ~le~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~---~~~~~gk~ 484 (708)
T PRK11154 410 EVEQNCAPHTIFASNTSS--LPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVA---LAKKQGKT 484 (708)
T ss_pred HHHhhCCCCcEEEECCCC--CCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHH---HHHHcCCc
Confidence 333557899999877754 444444443345566688888998752 23343444332110 11111123
Q ss_pred cceeCCeeeccCCCCcccccchhhHHHHHhCCcccCHHHHHHHH
Q 007112 503 PVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAAS 546 (617)
Q Consensus 503 pv~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA 546 (617)
||.. ...||..=|-..+|-+--++.+..-- ++.+-+..|.
T Consensus 485 pv~v---~d~pGfi~nRl~~~~~~EA~~lv~eG-v~~~dID~a~ 524 (708)
T PRK11154 485 PIVV---RDGAGFYVNRILAPYINEAARLLLEG-EPIEHIDAAL 524 (708)
T ss_pred eEEE---eccCcHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH
Confidence 4444 24677777777777666555554432 3544444443
No 356
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=47.35 E-value=1e+02 Score=32.44 Aligned_cols=83 Identities=17% Similarity=0.312 Sum_probs=50.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccC
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIK 437 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vk 437 (617)
+||.|+|.|+.+. +|+.+...|.+ .| ++.++++....... .... + -+
T Consensus 48 ~~I~i~G~G~S~~-~a~~~~~~l~~-~g-------~~~~~~~~~~~~~~------------------~~~~----~--~~ 94 (326)
T PRK10892 48 GKVVVMGMGKSGH-IGRKMAATFAS-TG-------TPSFFVHPGEAAHG------------------DLGM----V--TP 94 (326)
T ss_pred CeEEEEeCcHhHH-HHHHHHHHHhc-CC-------ceeEEeChHHhhcc------------------cccc----C--CC
Confidence 6999999997776 77777666654 34 34444332211000 0000 1 14
Q ss_pred CcEEEeecCCCCCCCHHHHHHHH--cCCCCcEEEecCCCC
Q 007112 438 PTMLMGTSGVGKTFTKEVVEAMA--SFNEKPVIFALSNPT 475 (617)
Q Consensus 438 PtvLIG~S~~~g~Fteevv~~Ma--~~~erPIIFaLSNPt 475 (617)
.|++|++|..|. |+++++.+. +.+.-|+|-==+||.
T Consensus 95 ~d~~I~iS~sG~--t~~~~~~~~~ak~~g~~vi~iT~~~~ 132 (326)
T PRK10892 95 QDVVIAISNSGE--SSEILALIPVLKRLHVPLICITGRPE 132 (326)
T ss_pred CCEEEEEeCCCC--CHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 689999999875 889998874 444557766555555
No 357
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=47.26 E-value=70 Score=33.11 Aligned_cols=86 Identities=13% Similarity=0.258 Sum_probs=52.2
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccC
Q 007112 359 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIK 437 (617)
Q Consensus 359 riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vk 437 (617)
||+|.|| |-.|--+++.+.. .| +++.+|+..-. +.-+..+...+.++++..+
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~-----~g--------~V~~~~~~~~~--------------~~~Dl~d~~~~~~~~~~~~ 54 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAP-----LG--------NLIALDVHSTD--------------YCGDFSNPEGVAETVRKIR 54 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhc-----cC--------CEEEecccccc--------------ccCCCCCHHHHHHHHHhcC
Confidence 7999997 9999888777643 13 36666654110 1011122235778888889
Q ss_pred CcEEEeecCCCCCC----------------CHHHHHHHHcCCCCcEEEecC
Q 007112 438 PTMLMGTSGVGKTF----------------TKEVVEAMASFNEKPVIFALS 472 (617)
Q Consensus 438 PtvLIG~S~~~g~F----------------teevv~~Ma~~~erPIIFaLS 472 (617)
||++|=+.+..+.- |..+++++.+.. .++||.=|
T Consensus 55 ~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g-~~~v~~Ss 104 (299)
T PRK09987 55 PDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVG-AWVVHYST 104 (299)
T ss_pred CCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC-CeEEEEcc
Confidence 99999776654321 334566665554 46887544
No 358
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=46.97 E-value=24 Score=39.38 Aligned_cols=75 Identities=23% Similarity=0.232 Sum_probs=42.6
Q ss_pred CcEEEeeCCC-------CCcc-eeCCeeeccCCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHHHhccCcccCCCCC
Q 007112 491 GQAIFASGSP-------FDPV-EYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQVTQEHFDKGL 562 (617)
Q Consensus 491 GraifASGSP-------F~pv-~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~~~~~~g~ 562 (617)
-.+|+|||-= |+-. +++|+.+++.|=-|..-|.|==-++|=++++-++ ..-+.++.- ..|+--...+..
T Consensus 134 ~~vV~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~d--i~~~l~~~g-a~vt~~qRs~~~ 210 (443)
T COG2072 134 DFVVVATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVD--IAPELAEVG-ASVTLSQRSPPH 210 (443)
T ss_pred CEEEEeecCCCCCCCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCccHHH--HHHHHHhcC-CeeEEEecCCCc
Confidence 4578899852 2222 2478999999999999998855555555555322 111122222 334433444555
Q ss_pred ccCCCC
Q 007112 563 IYPPFT 568 (617)
Q Consensus 563 l~P~~~ 568 (617)
++|.-.
T Consensus 211 ~~~~~~ 216 (443)
T COG2072 211 ILPKPL 216 (443)
T ss_pred eecccc
Confidence 666443
No 359
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=46.95 E-value=22 Score=39.93 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=32.6
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 354 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 354 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
.|++-+|+++|+|..|.=+++.|+.. |+ ++|.++|.+
T Consensus 17 ~L~~s~VlliG~gglGsEilKNLvL~-----GI------g~~tIvD~~ 53 (425)
T cd01493 17 ALESAHVCLLNATATGTEILKNLVLP-----GI------GSFTIVDGS 53 (425)
T ss_pred HHhhCeEEEEcCcHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 46789999999999999999999875 76 789999987
No 360
>PRK06475 salicylate hydroxylase; Provisional
Probab=46.93 E-value=22 Score=38.28 Aligned_cols=21 Identities=38% Similarity=0.355 Sum_probs=18.5
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007112 358 QTFLFLGAGEAGTGIAELIAL 378 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~ 378 (617)
+||+|+|||.||+..|-.|.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~ 23 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA 23 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh
Confidence 899999999999999877754
No 361
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=46.93 E-value=21 Score=38.07 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=25.4
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 357 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 357 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+.+|+|+|||.||+..|-.|.+ .|+ ++.++|++
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 50 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKD-----SGL-------RIALIEAQ 50 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEecC
Confidence 4689999999999999988865 364 45666654
No 362
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=46.91 E-value=13 Score=45.03 Aligned_cols=130 Identities=23% Similarity=0.327 Sum_probs=79.6
Q ss_pred HHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcc
Q 007112 321 KYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDS 400 (617)
Q Consensus 321 ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~ 400 (617)
||-.++.||.++-| ++|.++++.++|||+.||-.-+-++.. |+.--+ ...|.+.|-
T Consensus 412 RYD~qiavfG~~fq------------------eKL~~~~~FlVGaGAIGCE~LKN~am~-----Gvg~g~-~g~ItVTDm 467 (1013)
T KOG2012|consen 412 RYDGQIAVFGAKFQ------------------EKLADQKVFLVGAGAIGCELLKNFALM-----GVGCGN-SGKITVTDM 467 (1013)
T ss_pred ccccchhhhchHHH------------------HHHhhCcEEEEccchhhHHHHHhhhhe-----eeccCC-CCceEEecc
Confidence 67777777776655 678999999999999998665555432 553211 135777776
Q ss_pred CCcccCCcccCCchhchhhhccc--CC--CCCHHHHHhccCCcEEEe-------ecCCCCCCCHHHHHHHHcCCCCcEEE
Q 007112 401 KGLIVSSRKESLQHFKKPWAHEH--AP--IKSLLDAVKAIKPTMLMG-------TSGVGKTFTKEVVEAMASFNEKPVIF 469 (617)
Q Consensus 401 ~GLi~~~R~~~L~~~k~~fA~~~--~~--~~~L~eaV~~vkPtvLIG-------~S~~~g~Fteevv~~Ma~~~erPIIF 469 (617)
+ +|.++ +|+. |--| |+. .. ...-.+|+....|++.|= --+- ++|+.+--+.+- =++=
T Consensus 468 D-~IEkS---NLnR-QFLF-R~~dVgk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE-~If~D~Ff~~ld-----~Van 535 (1013)
T KOG2012|consen 468 D-HIEKS---NLNR-QFLF-RPWDVGKPKSEVAAAAARGMNPDLNIIALQNRVGPETE-HIFNDEFFENLD-----GVAN 535 (1013)
T ss_pred c-hhhhc---cccc-eeec-cccccCchHHHHHHHHHHhcCCCceeeehhhccCcccc-cccchhHHhhhH-----HHHH
Confidence 5 44443 2543 1112 221 11 124668899999999873 3332 578887766552 1233
Q ss_pred ecCCCCCCCCCCHHHHhccccCcEEE
Q 007112 470 ALSNPTSQSECTAEEAYTWSKGQAIF 495 (617)
Q Consensus 470 aLSNPt~~aEct~edA~~wT~Graif 495 (617)
||=|= ||-.|-|+||+|
T Consensus 536 ALDNV---------dAR~YvD~RCv~ 552 (1013)
T KOG2012|consen 536 ALDNV---------DARRYVDRRCVY 552 (1013)
T ss_pred hhcch---------hhhhhhhhhhhh
Confidence 45442 567777888887
No 363
>PRK07831 short chain dehydrogenase; Provisional
Probab=46.85 E-value=58 Score=32.40 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=22.9
Q ss_pred CCCCceEEEeCc-Ch-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 354 TLADQTFLFLGA-GE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 354 ~l~d~riv~~GA-Gs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
.+++.++||.|+ |+ .|..+|+.++ + .|. +++++|++
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~----~-~G~-------~V~~~~~~ 51 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRAL----E-EGA-------RVVISDIH 51 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHH----H-cCC-------EEEEEeCC
Confidence 456789999998 43 5555555554 3 363 37777753
No 364
>PRK09186 flagellin modification protein A; Provisional
Probab=46.61 E-value=26 Score=34.34 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=21.5
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 355 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 355 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+++.+++|.||+. ||...++..+.+ .|. ++.+++++
T Consensus 2 ~~~k~vlItGas~---giG~~~a~~l~~-~g~-------~v~~~~r~ 37 (256)
T PRK09186 2 LKGKTILITGAGG---LIGSALVKAILE-AGG-------IVIAADID 37 (256)
T ss_pred CCCCEEEEECCCc---hHHHHHHHHHHH-CCC-------EEEEEecC
Confidence 4678999999843 344444444443 353 46777654
No 365
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=46.60 E-value=33 Score=38.19 Aligned_cols=56 Identities=23% Similarity=0.338 Sum_probs=37.3
Q ss_pred HHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEc
Q 007112 320 SKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVD 399 (617)
Q Consensus 320 ~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD 399 (617)
++|-...+.+.|=..||+ .++++++++|.||.+ ||...++..+.+ .|. ++.++|
T Consensus 156 ~~~~~~~~~~~d~~~~ta---------------~sl~gK~VLITGASg---GIG~aLA~~La~-~G~-------~Vi~l~ 209 (406)
T PRK07424 156 NAYYCGTFTLVDKLMGTA---------------LSLKGKTVAVTGASG---TLGQALLKELHQ-QGA-------KVVALT 209 (406)
T ss_pred cceeeeeEEEeehhcCcc---------------cCCCCCEEEEeCCCC---HHHHHHHHHHHH-CCC-------EEEEEe
Confidence 356667789999888888 256778999999743 344444444444 353 567777
Q ss_pred cC
Q 007112 400 SK 401 (617)
Q Consensus 400 ~~ 401 (617)
++
T Consensus 210 r~ 211 (406)
T PRK07424 210 SN 211 (406)
T ss_pred CC
Confidence 64
No 366
>PF04320 DUF469: Protein with unknown function (DUF469); InterPro: IPR007416 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.
Probab=46.56 E-value=17 Score=33.38 Aligned_cols=32 Identities=16% Similarity=0.445 Sum_probs=25.2
Q ss_pred CChhhHHHHHHHHHHHHHH---hcCCCeeeeeecC
Q 007112 279 ATGQEYAELLQEFMTAVKQ---NYGEKVLIQFEDF 310 (617)
Q Consensus 279 ~~g~eY~~fidefv~av~~---~fGp~~lIqfEDf 310 (617)
.+.++||.|+|+|+..|.+ .||....-+||-|
T Consensus 27 ~~~e~~D~~~D~fId~Ie~~gL~~~Ggg~~~~eG~ 61 (101)
T PF04320_consen 27 TSEEQIDAFVDAFIDVIEPNGLAFGGGGYEQWEGF 61 (101)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEecCCccCEeEE
Confidence 5678999999999998887 4666656667765
No 367
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=46.55 E-value=35 Score=36.29 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=29.0
Q ss_pred cCCcEEEeecCCCCCCCHHHHHHHHcC--CCCcEEEecCCCCC
Q 007112 436 IKPTMLMGTSGVGKTFTKEVVEAMASF--NEKPVIFALSNPTS 476 (617)
Q Consensus 436 vkPtvLIG~S~~~g~Fteevv~~Ma~~--~erPIIFaLSNPt~ 476 (617)
-+-|++||+|..|. |+++++.+... ..-|+|.=-+||.+
T Consensus 125 ~~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~tIaIT~~~~s 165 (291)
T TIGR00274 125 TKNDVVVGIAASGR--TPYVIAGLQYARSLGALTISIACNPKS 165 (291)
T ss_pred CCCCEEEEEeCCCC--cHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 35699999999885 99999988543 33477776677763
No 368
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=46.49 E-value=58 Score=35.14 Aligned_cols=37 Identities=24% Similarity=0.132 Sum_probs=26.6
Q ss_pred CHHHHHhccCCcE-EEeecCCCCCCCHHHHHHHHcCCCCcEEE
Q 007112 428 SLLDAVKAIKPTM-LMGTSGVGKTFTKEVVEAMASFNEKPVIF 469 (617)
Q Consensus 428 ~L~eaV~~vkPtv-LIG~S~~~g~Fteevv~~Ma~~~erPIIF 469 (617)
.|.+.... .|+ ++|-|-..+ |...++|+|+ +..|||+
T Consensus 312 el~~~y~~--aDi~~v~~S~~e~-~g~~~lEAma--~G~PVI~ 349 (425)
T PRK05749 312 ELGLLYAI--ADIAFVGGSLVKR-GGHNPLEPAA--FGVPVIS 349 (425)
T ss_pred HHHHHHHh--CCEEEECCCcCCC-CCCCHHHHHH--hCCCEEE
Confidence 46666665 787 777665433 5556999999 7889997
No 369
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=46.47 E-value=14 Score=32.31 Aligned_cols=98 Identities=16% Similarity=0.125 Sum_probs=51.9
Q ss_pred EEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhc-ccCCCCCHHHHHhccCC
Q 007112 360 FLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH-EHAPIKSLLDAVKAIKP 438 (617)
Q Consensus 360 iv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~-~~~~~~~L~eaV~~vkP 438 (617)
|||+|.|..|..+++.|... + .++.++|++--.. +.+.....++-. +......|.++ .--++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-----~-------~~vvvid~d~~~~----~~~~~~~~~~i~gd~~~~~~l~~a-~i~~a 63 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-----G-------IDVVVIDRDPERV----EELREEGVEVIYGDATDPEVLERA-GIEKA 63 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-----T-------SEEEEEESSHHHH----HHHHHTTSEEEES-TTSHHHHHHT-TGGCE
T ss_pred eEEEcCCHHHHHHHHHHHhC-----C-------CEEEEEECCcHHH----HHHHhcccccccccchhhhHHhhc-Ccccc
Confidence 78999999999999888642 2 5799998862111 111111111111 11112334443 44568
Q ss_pred cEEEeecCCCCCCCHHHHHHHHcCCC-CcEEEecCCCC
Q 007112 439 TMLMGTSGVGKTFTKEVVEAMASFNE-KPVIFALSNPT 475 (617)
Q Consensus 439 tvLIG~S~~~g~Fteevv~~Ma~~~e-rPIIFaLSNPt 475 (617)
+.+|-++... .-+-.++....+.++ -+||.-+.||.
T Consensus 64 ~~vv~~~~~d-~~n~~~~~~~r~~~~~~~ii~~~~~~~ 100 (116)
T PF02254_consen 64 DAVVILTDDD-EENLLIALLARELNPDIRIIARVNDPE 100 (116)
T ss_dssp SEEEEESSSH-HHHHHHHHHHHHHTTTSEEEEEESSHH
T ss_pred CEEEEccCCH-HHHHHHHHHHHHHCCCCeEEEEECCHH
Confidence 8888776633 233334444444455 46666565555
No 370
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=46.43 E-value=23 Score=37.55 Aligned_cols=31 Identities=26% Similarity=0.420 Sum_probs=24.6
Q ss_pred EEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCC
Q 007112 360 FLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 402 (617)
Q Consensus 360 iv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~G 402 (617)
|+|+|||.||+..|..+.+ .|+ ++.++|++.
T Consensus 2 viIiGaG~AGl~~A~~la~-----~g~-------~v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELAR-----PGL-------RVQLIEPHP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHh-----CCC-------eEEEEccCC
Confidence 7999999999999977653 253 688899764
No 371
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=46.39 E-value=1.1e+02 Score=31.57 Aligned_cols=88 Identities=19% Similarity=0.191 Sum_probs=53.5
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhcc
Q 007112 358 QTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAI 436 (617)
Q Consensus 358 ~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~v 436 (617)
-||.++|+ |..|-.+++.+... .++ +=..++|++. ++.... ..+ +.....++.++++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~----~~~------elvav~d~~~----~~~~~~----~~~--~i~~~~dl~~ll~-- 59 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA----EDL------ELVAAVDRPG----SPLVGQ----GAL--GVAITDDLEAVLA-- 59 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC----CCC------EEEEEEecCC----cccccc----CCC--CccccCCHHHhcc--
Confidence 38999999 99998888776431 232 3355677752 111111 111 1122367888886
Q ss_pred CCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEe
Q 007112 437 KPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFA 470 (617)
Q Consensus 437 kPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 470 (617)
+||++|=+|... ...++++...+. ..|+|..
T Consensus 60 ~~DvVid~t~p~--~~~~~~~~al~~-G~~vvig 90 (257)
T PRK00048 60 DADVLIDFTTPE--ATLENLEFALEH-GKPLVIG 90 (257)
T ss_pred CCCEEEECCCHH--HHHHHHHHHHHc-CCCEEEE
Confidence 599999888543 346666665544 5778855
No 372
>PLN02268 probable polyamine oxidase
Probab=46.31 E-value=9.6 Score=41.27 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=18.5
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007112 359 TFLFLGAGEAGTGIAELIAL 378 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~ 378 (617)
+|+|+|||-||+..|..|.+
T Consensus 2 ~VvVIGaGisGL~aA~~L~~ 21 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHD 21 (435)
T ss_pred CEEEECCCHHHHHHHHHHHh
Confidence 78999999999999999965
No 373
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.24 E-value=77 Score=34.94 Aligned_cols=117 Identities=17% Similarity=0.240 Sum_probs=64.2
Q ss_pred CCC-ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHH
Q 007112 355 LAD-QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAV 433 (617)
Q Consensus 355 l~d-~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV 433 (617)
++. +||+|+|.|-.|++.+.+|... .| .-++...|.+=. ....+.|.. ...+...+ .+ .+.+
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~----~~------~~~v~~~D~~~~--~~~~~~l~~-g~~~~~g~---~~-~~~~ 66 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKY----QP------QLTVKVIDTRET--PPGQEQLPE-DVELHSGG---WN-LEWL 66 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhc----CC------CCeEEEEeCCCC--chhHHHhhc-CCEEEeCC---CC-hHHh
Confidence 344 6899999999999999998753 22 124777886421 000011211 11111110 01 1234
Q ss_pred hccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCeee
Q 007112 434 KAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGKVF 511 (617)
Q Consensus 434 ~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~GraifASGSPF~pv~~~Gk~~ 511 (617)
. ++|.+|=.++.+ --.+++.++.. ..-||+ +.+|. ++.+.+.+.|-.||| ||||-
T Consensus 67 ~--~~d~vV~SpgI~-~~~p~~~~a~~--~gi~i~-------~~~el----~~~~~~~~~I~VTGT-------nGKTT 121 (438)
T PRK04663 67 L--EADLVVTNPGIA-LATPEIQQVLA--AGIPVV-------GDIEL----FAWAVDKPVIAITGS-------NGKST 121 (438)
T ss_pred c--cCCEEEECCCCC-CCCHHHHHHHH--CCCcEE-------EHHHH----HHhhcCCCEEEEeCC-------CCHHH
Confidence 3 378777556665 34667666654 346774 33333 333445678888997 77754
No 374
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=46.24 E-value=26 Score=38.33 Aligned_cols=33 Identities=30% Similarity=0.476 Sum_probs=27.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCC
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 402 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~G 402 (617)
-.+||+|||+||+..|..+.+ .| .++.++|++.
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~-----~g-------~~V~liE~~~ 36 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLAS-----AG-------KKVALVEESK 36 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHh-----CC-------CEEEEEecCC
Confidence 469999999999999988865 25 5699999864
No 375
>PLN02427 UDP-apiose/xylose synthase
Probab=46.17 E-value=66 Score=34.35 Aligned_cols=84 Identities=19% Similarity=0.260 Sum_probs=50.9
Q ss_pred HHHhCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchh-------chhh
Q 007112 348 LKLVGGTLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF-------KKPW 419 (617)
Q Consensus 348 lr~~g~~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~-------k~~f 419 (617)
+.+.|++++-.||+|.|| |-.|.-+++.|++. .| .+++.+|+.. .+...+.+. ..+|
T Consensus 5 ~~~~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~----~g-------~~V~~l~r~~----~~~~~l~~~~~~~~~~~~~~ 69 (386)
T PLN02427 5 LDLDGKPIKPLTICMIGAGGFIGSHLCEKLMTE----TP-------HKVLALDVYN----DKIKHLLEPDTVPWSGRIQF 69 (386)
T ss_pred hcCCCCcccCcEEEEECCcchHHHHHHHHHHhc----CC-------CEEEEEecCc----hhhhhhhccccccCCCCeEE
Confidence 457899999999999996 88888888877652 12 3677787541 110111100 1122
Q ss_pred hc-ccCCCCCHHHHHhccCCcEEEeecCCC
Q 007112 420 AH-EHAPIKSLLDAVKAIKPTMLMGTSGVG 448 (617)
Q Consensus 420 A~-~~~~~~~L~eaV~~vkPtvLIG~S~~~ 448 (617)
.+ +-.....+.++++. +|++|=+.+..
T Consensus 70 ~~~Dl~d~~~l~~~~~~--~d~ViHlAa~~ 97 (386)
T PLN02427 70 HRINIKHDSRLEGLIKM--ADLTINLAAIC 97 (386)
T ss_pred EEcCCCChHHHHHHhhc--CCEEEEccccc
Confidence 11 11222457778875 89999877653
No 376
>PRK08219 short chain dehydrogenase; Provisional
Probab=46.15 E-value=74 Score=30.43 Aligned_cols=71 Identities=23% Similarity=0.296 Sum_probs=38.4
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhh-----hc-ccCCCCCHH
Q 007112 358 QTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPW-----AH-EHAPIKSLL 430 (617)
Q Consensus 358 ~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~f-----A~-~~~~~~~L~ 430 (617)
.+++|.|| |..|..+++.+++. .+++++|++. +.++...... -+ +-.+..++.
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~-------------~~V~~~~r~~-------~~~~~~~~~~~~~~~~~~D~~~~~~~~ 63 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT-------------HTLLLGGRPA-------ERLDELAAELPGATPFPVDLTDPEAIA 63 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh-------------CCEEEEeCCH-------HHHHHHHHHhccceEEecCCCCHHHHH
Confidence 57899997 44555555554321 3578887751 1111111111 01 112224667
Q ss_pred HHHhcc-CCcEEEeecCCC
Q 007112 431 DAVKAI-KPTMLMGTSGVG 448 (617)
Q Consensus 431 eaV~~v-kPtvLIG~S~~~ 448 (617)
++++.+ ++|++|-+.+..
T Consensus 64 ~~~~~~~~id~vi~~ag~~ 82 (227)
T PRK08219 64 AAVEQLGRLDVLVHNAGVA 82 (227)
T ss_pred HHHHhcCCCCEEEECCCcC
Confidence 777655 689999888764
No 377
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=46.08 E-value=97 Score=30.71 Aligned_cols=104 Identities=15% Similarity=0.131 Sum_probs=50.6
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHh
Q 007112 355 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVK 434 (617)
Q Consensus 355 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~ 434 (617)
.++.||.|+|.|..+ -+|..+...|..+.++.. --.+++..+....+.. - .+-..+...|++. ..+.
T Consensus 42 ~~~~rI~i~G~G~S~-~~A~~~a~~l~~~~~~~r--~g~~~~~~~d~~~~~~-~-~~d~~~~~~~~~~-------~~~~- 108 (192)
T PRK00414 42 KAGGKVLSCGNGGSH-CDAMHFAEELTGRYRENR--PGYPAIAISDVSHLSC-V-SNDFGYDYVFSRY-------VEAV- 108 (192)
T ss_pred HCCCEEEEEeCcHHH-HHHHHHHHHhcccccCCC--CCceEEecCcHHHHhh-h-hccCCHHHHHHHH-------HHHh-
Confidence 467899999999987 466666655532112110 0112222211101100 0 0001111122211 1111
Q ss_pred ccCCcEEEeecCCCCCCCHHHHHHHH--cCCCCcEEEecCC
Q 007112 435 AIKPTMLMGTSGVGKTFTKEVVEAMA--SFNEKPVIFALSN 473 (617)
Q Consensus 435 ~vkPtvLIG~S~~~g~Fteevv~~Ma--~~~erPIIFaLSN 473 (617)
.-+-|++|++|..| -|+++++.+. +...-|+|-=-+|
T Consensus 109 ~~~~Dv~I~iS~SG--~t~~~i~~~~~ak~~g~~iI~iT~~ 147 (192)
T PRK00414 109 GREGDVLLGISTSG--NSGNIIKAIEAARAKGMKVITLTGK 147 (192)
T ss_pred CCCCCEEEEEeCCC--CCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 23469999999987 4999998874 3334455543333
No 378
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=46.06 E-value=20 Score=38.29 Aligned_cols=73 Identities=12% Similarity=0.162 Sum_probs=49.2
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccC----CCCC
Q 007112 353 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHA----PIKS 428 (617)
Q Consensus 353 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~----~~~~ 428 (617)
++|+.-+|+++|+|.-|.-+|+-|+.+ |+ ++|.++|.+-. ..+ +|+. .|-+..+ ....
T Consensus 22 ~KL~~SrVLVVG~GGLGsEVAKnLaLA-----GV------GsItIvDdD~V-e~S---NL~R---Qfl~~~dvGk~KAea 83 (287)
T PTZ00245 22 QQLMHTSVALHGVAGAAAEAAKNLVLA-----GV------RAVAVADEGLV-TDA---DVCT---NYLMQGEAGGTRGAR 83 (287)
T ss_pred HHHhhCeEEEECCCchHHHHHHHHHHc-----CC------CeEEEecCCcc-chh---hhcc---ccccccccCCcHHHH
Confidence 468889999999999999999999775 76 78999998732 221 2321 1222111 1134
Q ss_pred HHHHHhccCCcEEEe
Q 007112 429 LLDAVKAIKPTMLMG 443 (617)
Q Consensus 429 L~eaV~~vkPtvLIG 443 (617)
..+-++.+.|+|-|=
T Consensus 84 Aa~~L~eLNP~V~V~ 98 (287)
T PTZ00245 84 ALGALQRLNPHVSVY 98 (287)
T ss_pred HHHHHHHHCCCcEEE
Confidence 667777788888773
No 379
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=45.89 E-value=49 Score=36.21 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=26.6
Q ss_pred HHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHH
Q 007112 345 LSALKLVGGTLADQTFLFLGAGEAGTGIAELIAL 378 (617)
Q Consensus 345 l~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~ 378 (617)
.-++......|.+.|++++|-+.-..++++.+.+
T Consensus 264 ~~~l~~~~~~l~Gkrv~i~g~~~~~~~la~~L~e 297 (396)
T cd01979 264 WRALEPYLDLLRGKSIFFMGDNLLEIPLARFLTR 297 (396)
T ss_pred HHHHHHHHHhhcCCEEEEECCchHHHHHHHHHHH
Confidence 4444455566778899999999889999999876
No 380
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=45.68 E-value=24 Score=34.94 Aligned_cols=80 Identities=20% Similarity=0.169 Sum_probs=41.0
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchh-c---hhhhcccCCCCCH
Q 007112 354 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF-K---KPWAHEHAPIKSL 429 (617)
Q Consensus 354 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~-k---~~fA~~~~~~~~L 429 (617)
.+.+++++|.||.+ ||...|+..+.+ .|. ++.++|++. .+.+.+... . ..+.-+..+..++
T Consensus 3 ~l~~~~vlItGas~---~iG~~ia~~l~~-~G~-------~v~~~~r~~----~~~~~~~~~~~~~~~~~~~D~~~~~~~ 67 (257)
T PRK07067 3 RLQGKVALLTGAAS---GIGEAVAERYLA-EGA-------RVVIADIKP----ARARLAALEIGPAAIAVSLDVTRQDSI 67 (257)
T ss_pred CCCCCEEEEeCCCc---hHHHHHHHHHHH-cCC-------EEEEEcCCH----HHHHHHHHHhCCceEEEEccCCCHHHH
Confidence 46788999999743 344444444444 363 578887641 110111110 0 0111122222356
Q ss_pred HHHHhcc-----CCcEEEeecCCC
Q 007112 430 LDAVKAI-----KPTMLMGTSGVG 448 (617)
Q Consensus 430 ~eaV~~v-----kPtvLIG~S~~~ 448 (617)
.++++.+ ++|+||=+.+..
T Consensus 68 ~~~~~~~~~~~~~id~li~~ag~~ 91 (257)
T PRK07067 68 DRIVAAAVERFGGIDILFNNAALF 91 (257)
T ss_pred HHHHHHHHHHcCCCCEEEECCCcC
Confidence 6666654 689999776643
No 381
>PRK06841 short chain dehydrogenase; Provisional
Probab=45.57 E-value=40 Score=33.13 Aligned_cols=36 Identities=28% Similarity=0.440 Sum_probs=23.3
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 354 TLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 354 ~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
++++.+++|.|| |..|..+|+.+ .+ .|. ++++++++
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l----~~-~G~-------~Vi~~~r~ 48 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELF----AA-KGA-------RVALLDRS 48 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHH----HH-CCC-------EEEEEeCC
Confidence 467889999998 44444444444 33 363 57778775
No 382
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=45.48 E-value=26 Score=36.23 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=26.8
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCC
Q 007112 357 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 402 (617)
Q Consensus 357 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~G 402 (617)
+..++|+|||.||+..|-.+.+ .|+ ++.++|++-
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~-----~G~-------~V~liEk~~ 58 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAK-----AGL-------KVAVFERKL 58 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 5679999999999999887754 353 588888764
No 383
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=45.36 E-value=83 Score=35.59 Aligned_cols=135 Identities=15% Similarity=0.196 Sum_probs=65.4
Q ss_pred HHHHHHHhcCC-CeeeeeecCCCCcHHHHHHHHcCCCceeecCccchhHHHHH----HHHHHHHHhCCCCCCceEEEeCc
Q 007112 291 FMTAVKQNYGE-KVLIQFEDFANHNAFELLSKYSSSHLVFNDDIQGTASVVLA----GILSALKLVGGTLADQTFLFLGA 365 (617)
Q Consensus 291 fv~av~~~fGp-~~lIqfEDf~~~~Af~lL~ryr~~~~~FNDDiQGTaaV~LA----gll~Alr~~g~~l~d~riv~~GA 365 (617)
..+.++++||- -..+.| ++-.+.-+.|++... .|++++...+--+++ -+...+......|++.|++++|.
T Consensus 269 ~A~~Le~~fGiP~~~~~~--~Gi~~T~~~Lr~ia~---~~g~~i~~~~e~~I~~e~~~~~~~ld~~~~~L~GKrv~i~~g 343 (466)
T TIGR01282 269 ISRHMEEKYGIPWMEYNF--FGPTKIAESLRKIAE---FFDDEIKEKAEEVIAKYQPAVDAVIAKYRPRLEGKTVMLYVG 343 (466)
T ss_pred HHHHHHHHhCCceEeCCC--CCHHHHHHHHHHHHH---HHCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 34455666762 222233 555555555554432 234443322211111 13333444567889999999988
Q ss_pred ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhc-----ccCCCCCHHHHHhccCCcE
Q 007112 366 GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH-----EHAPIKSLLDAVKAIKPTM 440 (617)
Q Consensus 366 GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~-----~~~~~~~L~eaV~~vkPtv 440 (617)
|.=...++.++ ++.|+.. ..+-. .....++.....+.... +..+...|++.++..|||+
T Consensus 344 ~~~~~~~~~~l-----~ELGmev-------v~~g~----~~~~~~~~~~~~~~~~~~~~i~~~~d~~el~~~i~~~~pDl 407 (466)
T TIGR01282 344 GLRPRHVIGAF-----EDLGMEV-------IGTGY----EFAHNDDYERTTKYMKDGTLIYDDVTHYEFEEFVEKLKPDL 407 (466)
T ss_pred CCcHHHHHHHH-----HHCCCEE-------EEEee----ecCCHHHHHHHHHhcCCCeEEeeCCCHHHHHHHHHHhCCCE
Confidence 77666666643 2358732 11100 00011111111111100 1112236888999999999
Q ss_pred EEeecC
Q 007112 441 LMGTSG 446 (617)
Q Consensus 441 LIG~S~ 446 (617)
+||-|-
T Consensus 408 ~ig~~~ 413 (466)
T TIGR01282 408 VGSGIK 413 (466)
T ss_pred EEecCC
Confidence 998664
No 384
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=45.24 E-value=29 Score=42.70 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=31.5
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC----CcccC
Q 007112 355 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK----GLIVS 406 (617)
Q Consensus 355 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~----GLi~~ 406 (617)
-.++||+|+|||.||+..|..|... |. ++.++|+. |++.-
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~-----G~-------~VtVfE~~~~~GG~l~y 347 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVE-----GF-------PVTVFEAFHDLGGVLRY 347 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeeCCCCCceEEc
Confidence 4589999999999999999998753 63 57888875 65543
No 385
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=44.83 E-value=25 Score=38.59 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=26.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCC
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 402 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~G 402 (617)
-.+||+|||+||+..|..+.+. | .++.++|++.
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~-----G-------~~V~liE~~~ 37 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQL-----G-------LKVAIVEKEK 37 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEeccc
Confidence 3699999999999999887653 5 4788999864
No 386
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=44.81 E-value=25 Score=39.66 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=26.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCC
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 402 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~G 402 (617)
-.|||+|+|.+|++||..+.. .|+ ++.++|+..
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~-----rGl-------~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAG-----RGL-------SVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHH-----CCC-------eEEEEecCC
Confidence 469999999999999988765 375 488888763
No 387
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=44.58 E-value=33 Score=28.36 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=23.7
Q ss_pred EeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcc
Q 007112 362 FLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI 404 (617)
Q Consensus 362 ~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi 404 (617)
|+|||.+|+..|-.|.+. | .+|.++|++--+
T Consensus 1 IiGaG~sGl~aA~~L~~~-----g-------~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-----G-------YRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-----T-------SEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHC-----C-------CcEEEEecCccc
Confidence 689999999999888653 4 589999987543
No 388
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=44.56 E-value=2.1e+02 Score=36.70 Aligned_cols=120 Identities=18% Similarity=0.258 Sum_probs=74.3
Q ss_pred HHHHHHHHHhcCCCeeeeeecCCCC-------cHHHHHHHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCCceEE
Q 007112 289 QEFMTAVKQNYGEKVLIQFEDFANH-------NAFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFL 361 (617)
Q Consensus 289 defv~av~~~fGp~~lIqfEDf~~~-------~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv 361 (617)
-+.+++.-+.++.+.+|| |++.. +-+++..+|.-.+|+.+=|-+|.+-- .+.|
T Consensus 441 ~~ViEaaLk~~~G~~IIN--SIs~~~~~~~~~~~~~l~~kyga~vV~m~~de~G~~~t----------------~e~r-- 500 (1229)
T PRK09490 441 WEVIEAGLKCIQGKGIVN--SISLKEGEEKFIEHARLVRRYGAAVVVMAFDEQGQADT----------------RERK-- 500 (1229)
T ss_pred HHHHHHHHhhcCCCCEEE--eCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCCC----------------HHHH--
Confidence 566777777776777876 44432 46788999999999988887776633 1122
Q ss_pred EeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccC----
Q 007112 362 FLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIK---- 437 (617)
Q Consensus 362 ~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vk---- 437 (617)
+-||+.+...+.++.|++. ++|+ +|.-=+ +-+- ...+ ...+|.+ ..|+|+.+|
T Consensus 501 --------~~ia~r~~~~~~~~~Gi~~----~dIi-~Dplv~-~v~t--~~ee-~~~~~~~------~leair~ik~~~P 557 (1229)
T PRK09490 501 --------IEICKRAYDILTEEVGFPP----EDII-FDPNIF-AVAT--GIEE-HNNYAVD------FIEATRWIKQNLP 557 (1229)
T ss_pred --------HHHHHHHHHHHHHHcCCCH----HHEE-EcCCcc-eeec--ChHH-HHHHHHH------HHHHHHHHHHHCC
Confidence 3688888887765579975 4555 787422 2111 1222 2233332 345565333
Q ss_pred -CcEEEeecCCCCCC
Q 007112 438 -PTMLMGTSGVGKTF 451 (617)
Q Consensus 438 -PtvLIG~S~~~g~F 451 (617)
..+..|+|...=-|
T Consensus 558 ~~~~~~GlSNiSFgl 572 (1229)
T PRK09490 558 HAKISGGVSNVSFSF 572 (1229)
T ss_pred CCcEEEeeccccccC
Confidence 35899999987555
No 389
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=44.52 E-value=28 Score=38.35 Aligned_cols=31 Identities=26% Similarity=0.627 Sum_probs=25.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
.++|+|||.||+.+|..+.+ .| .++.++|+.
T Consensus 3 DvvIIGaG~aGlsaA~~La~-----~G-------~~V~viEk~ 33 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQ-----LN-------KRVLVVEKR 33 (377)
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEecC
Confidence 58999999999999988764 25 468888874
No 390
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=44.49 E-value=43 Score=36.70 Aligned_cols=64 Identities=19% Similarity=0.238 Sum_probs=42.7
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc-cCCCCCHHH
Q 007112 353 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAPIKSLLD 431 (617)
Q Consensus 353 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~-~~~~~~L~e 431 (617)
..|++.+|.|+|-|+-|.++|+.+... |+ +++..|+.+ ++ .+ .|.. .-...++.|
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~-----G~-------~ViV~~r~~---~s----~~-----~A~~~G~~v~sl~E 67 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDS-----GV-------EVVVGVRPG---KS----FE-----VAKADGFEVMSVSE 67 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHC-----cC-------EEEEEECcc---hh----hH-----HHHHcCCEECCHHH
Confidence 357899999999999999999998653 65 466665431 11 11 1111 112247999
Q ss_pred HHhccCCcEEE
Q 007112 432 AVKAIKPTMLM 442 (617)
Q Consensus 432 aV~~vkPtvLI 442 (617)
+++. .|+++
T Consensus 68 aak~--ADVV~ 76 (335)
T PRK13403 68 AVRT--AQVVQ 76 (335)
T ss_pred HHhc--CCEEE
Confidence 9987 78876
No 391
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=44.40 E-value=2.4e+02 Score=35.96 Aligned_cols=120 Identities=17% Similarity=0.259 Sum_probs=64.3
Q ss_pred HHHHHHHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCe
Q 007112 315 AFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKK 394 (617)
Q Consensus 315 Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~ 394 (617)
-+++..+|.-.+|+.+=|-+|.+.-.- .| +-|++.++..+.++.|++. ++
T Consensus 456 ~~~l~~~yga~vV~m~~de~G~p~t~e----------------~r----------~~i~~~~~~~~~~~~Gi~~----ed 505 (1178)
T TIGR02082 456 TAKLIKEYGAAVVVMAFDEEGQARTAD----------------RK----------IEICKRAYNILTEKVGFPP----ED 505 (1178)
T ss_pred HHHHHHHhCCCEEEEecCCCCCCCCHH----------------HH----------HHHHHHHHHHHHHHcCCCH----HH
Confidence 556666676666666655555432110 11 2388888888775479974 56
Q ss_pred EEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhcc-----CCcEEEeecCCCCCCC-----HHHHHH----HH
Q 007112 395 IWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAI-----KPTMLMGTSGVGKTFT-----KEVVEA----MA 460 (617)
Q Consensus 395 i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~v-----kPtvLIG~S~~~g~Ft-----eevv~~----Ma 460 (617)
|| +|.- +.+-+-. .+ .+..++. . -.|+|+.+ ..-+++|+|...=-|. .+++.. ||
T Consensus 506 Ii-~DP~-i~~v~~g--~~-e~n~~~~-----~-~le~i~~ik~~~pg~~~~~GlSN~SFglp~~~~~R~~ln~~FL~~a 574 (1178)
T TIGR02082 506 II-FDPN-ILTIATG--IE-EHRRYAI-----N-FIEAIRWIKEELPDAKISGGVSNVSFSFRGNPAAREAMHSVFLYHA 574 (1178)
T ss_pred EE-EeCC-ccccccC--ch-HHHHHHH-----H-HHHHHHHHHHhCCCCceEEEecccccCCCCCchHHHHHHHHHHHHH
Confidence 66 7773 2221111 11 1112221 2 33566666 4569999999875553 344332 12
Q ss_pred cCCCCcEEEecCCCCCC
Q 007112 461 SFNEKPVIFALSNPTSQ 477 (617)
Q Consensus 461 ~~~erPIIFaLSNPt~~ 477 (617)
-..=.=+|+.||...
T Consensus 575 --~~~Gld~aIvnp~~~ 589 (1178)
T TIGR02082 575 --IRAGMDMGIVNAGKI 589 (1178)
T ss_pred --HHcCCchhhcChhhh
Confidence 122334566788754
No 392
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=44.38 E-value=26 Score=39.15 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=18.3
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007112 358 QTFLFLGAGEAGTGIAELIAL 378 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~ 378 (617)
-.|+|+|||.||...|..+..
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~ 60 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAK 60 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 468999999999999988764
No 393
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=44.36 E-value=85 Score=30.73 Aligned_cols=147 Identities=18% Similarity=0.198 Sum_probs=87.4
Q ss_pred hhcCCCcccccccccccHHHHHhcCCCCCeeEEEEecC--ceeecCCCCCCC--cccchhhhHHHHhhhcCCCCCceeeE
Q 007112 179 IFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDG--ERILGLGDLGCQ--GMGIPVGKLSLYTALGGLRPSACLPI 254 (617)
Q Consensus 179 i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG--~rILGLGDlG~~--GmgI~iGKl~LYta~gGI~P~~~LPI 254 (617)
+-+++.|+-++.-|.....+.++.+-..+|.|+.+-.. ..-..+--.|.+ .+|-..|+..+-....+ ..|
T Consensus 52 i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~------~~v 125 (257)
T PF13407_consen 52 ISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAK------GKV 125 (257)
T ss_dssp HHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTT------EEE
T ss_pred HHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEeccccccccceeeeeccHHHHHHHHHHHHHHHhccC------ceE
Confidence 46779999999999988888998888888988887555 111122223332 36666777777666655 445
Q ss_pred EeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhcCCCee-ee---eecCCCCcHHHHHHHHcCCCceee
Q 007112 255 TIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVL-IQ---FEDFANHNAFELLSKYSSSHLVFN 330 (617)
Q Consensus 255 ~LDvGTnNe~LL~DplYlG~r~~R~~g~eY~~fidefv~av~~~fGp~~l-Iq---fEDf~~~~Af~lL~ryr~~~~~FN 330 (617)
++=.|..+ .....+.++-|.+++++ ++ ++= +. +.++....+.+..+++-..++ -
T Consensus 126 ~~~~~~~~------------------~~~~~~r~~g~~~~l~~-~~-~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~--~ 183 (257)
T PF13407_consen 126 LILSGSPG------------------NPNTQERLEGFRDALKE-YP-GVEIVDEYEYTDWDPEDARQAIENLLQANP--V 183 (257)
T ss_dssp EEEESSTT------------------SHHHHHHHHHHHHHHHH-CT-TEEEEEEEEECTTSHHHHHHHHHHHHHHTT--E
T ss_pred EeccCCCC------------------chHHHHHHHHHHHHHhh-cc-eeeeeeeeeccCCCHHHHHHHHHHhhhcCC--c
Confidence 54444311 12333457788888888 64 432 22 236777777765555532221 1
Q ss_pred cCccchhHHHHHHHHHHHHHhCC
Q 007112 331 DDIQGTASVVLAGILSALKLVGG 353 (617)
Q Consensus 331 DDiQGTaaV~LAgll~Alr~~g~ 353 (617)
|=|=.+....+-|++.|++-.|+
T Consensus 184 ~~i~~~~~~~~~g~~~al~~~g~ 206 (257)
T PF13407_consen 184 DAIIACNDGMALGAAQALQQAGR 206 (257)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTC
T ss_pred eEEEeCCChHHHHHHHHHHHcCC
Confidence 11112223344477888888887
No 394
>PRK07589 ornithine cyclodeaminase; Validated
Probab=44.27 E-value=2.3e+02 Score=31.04 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=64.9
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhccc---CCCCCHHHHH
Q 007112 357 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH---APIKSLLDAV 433 (617)
Q Consensus 357 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~---~~~~~L~eaV 433 (617)
-.++.++|+|.-+.--++.++.. ..+ ++|+++|+. ..+ .+.+...+.+.. ....+++|+|
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~v----r~i------~~V~v~~r~----~~~---a~~~~~~~~~~~~~v~~~~~~~~av 191 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKAL----LGI------EEIRLYDID----PAA---TAKLARNLAGPGLRIVACRSVAEAV 191 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHh----CCc------eEEEEEeCC----HHH---HHHHHHHHHhcCCcEEEeCCHHHHH
Confidence 47899999999887776666553 133 778888764 221 233333332211 1236899999
Q ss_pred hccCCcEEEeecCCC---CCCCHHHHHHHHcCCCCcEEEec-CCCCCCCCCCHHH
Q 007112 434 KAIKPTMLMGTSGVG---KTFTKEVVEAMASFNEKPVIFAL-SNPTSQSECTAEE 484 (617)
Q Consensus 434 ~~vkPtvLIG~S~~~---g~Fteevv~~Ma~~~erPIIFaL-SNPt~~aEct~ed 484 (617)
+. .||++-++... .+|..+.++. .--|-++ |+--.+.|+.++-
T Consensus 192 ~~--ADIIvtaT~S~~~~Pvl~~~~lkp------G~hV~aIGs~~p~~~Eld~~~ 238 (346)
T PRK07589 192 EG--ADIITTVTADKTNATILTDDMVEP------GMHINAVGGDCPGKTELHPDI 238 (346)
T ss_pred hc--CCEEEEecCCCCCCceecHHHcCC------CcEEEecCCCCCCcccCCHHH
Confidence 88 99999876432 4688887742 2235554 4544578999875
No 395
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=44.08 E-value=29 Score=36.35 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=27.1
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCC
Q 007112 357 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 402 (617)
Q Consensus 357 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~G 402 (617)
...|+|+|||-+|+.+|-.|.+. | .++.++|+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~-----g-------~~V~lie~~~ 36 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR-----G-------LRVLGLDRFM 36 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeccc
Confidence 35699999999999999777652 5 4688998764
No 396
>PLN02676 polyamine oxidase
Probab=43.91 E-value=59 Score=36.71 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=20.0
Q ss_pred CCceEEEeCcChHHHHHHHHHHH
Q 007112 356 ADQTFLFLGAGEAGTGIAELIAL 378 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~ 378 (617)
...+++|+|||.+|+..|..|.+
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~ 47 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSE 47 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH
Confidence 35679999999999999998875
No 397
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=43.87 E-value=32 Score=36.35 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=26.7
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+.-+|+|+|||.||...|-+|...- + .|+ ++.++|++
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~-~-~G~-------~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLS-H-GGL-------PVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcc-c-CCC-------EEEEEeCC
Confidence 3457999999999999988886520 1 154 57778874
No 398
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=43.86 E-value=1.2e+02 Score=27.73 Aligned_cols=68 Identities=15% Similarity=0.171 Sum_probs=44.9
Q ss_pred CCCCcccchhhhHHHHhhhcCCCCCceeeEEeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhcCCCee
Q 007112 225 LGCQGMGIPVGKLSLYTALGGLRPSACLPITIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVL 304 (617)
Q Consensus 225 lG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~DplYlG~r~~R~~g~eY~~fidefv~av~~~fGp~~l 304 (617)
.|..|-...--+..+-......+|+. |+|-+|||. .++ +.+-++|.+-+.+|++.++..+ |++.
T Consensus 18 ~g~~G~~~~~~~~~~~~~~~~~~pd~---vvi~~G~ND------~~~------~~~~~~~~~~~~~~i~~i~~~~-p~~~ 81 (157)
T cd01833 18 EGHSGYLIDQIAAAAADWVLAAKPDV---VLLHLGTND------LVL------NRDPDTAPDRLRALIDQMRAAN-PDVK 81 (157)
T ss_pred CCCCCccHHHHHHHhhhccccCCCCE---EEEeccCcc------ccc------CCCHHHHHHHHHHHHHHHHHhC-CCeE
Confidence 44455444444444444555566654 578889983 332 2467889999999999999987 8776
Q ss_pred eeee
Q 007112 305 IQFE 308 (617)
Q Consensus 305 IqfE 308 (617)
|-|-
T Consensus 82 ii~~ 85 (157)
T cd01833 82 IIVA 85 (157)
T ss_pred EEEE
Confidence 6553
No 399
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=43.78 E-value=26 Score=39.57 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=29.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
||+++|||..|+-+++.|+.. |+...+ ..+|.++|.+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~-----Gv~~g~-~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM-----GVGTGE-SGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CCCcCC-CCeEEEECCC
Confidence 689999999999999999875 552111 2789999987
No 400
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=43.77 E-value=91 Score=32.49 Aligned_cols=82 Identities=13% Similarity=0.143 Sum_probs=47.6
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcc-cCCcccCCch------hchhhhc-ccC
Q 007112 354 TLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI-VSSRKESLQH------FKKPWAH-EHA 424 (617)
Q Consensus 354 ~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi-~~~R~~~L~~------~k~~fA~-~~~ 424 (617)
+++..+++|.|| |-.|..+++.|+. .|. +++.+|+..-- ...+.+.+.. .+..|-. +-.
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~-----~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 70 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLS-----KGY-------EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLS 70 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEEecccccccccchhhhccccccccCceEEEEecCC
Confidence 567789999997 7788888777764 253 57777764210 0000001100 0111111 222
Q ss_pred CCCCHHHHHhccCCcEEEeecCC
Q 007112 425 PIKSLLDAVKAIKPTMLMGTSGV 447 (617)
Q Consensus 425 ~~~~L~eaV~~vkPtvLIG~S~~ 447 (617)
+..++.++++..+||++|=+.+.
T Consensus 71 d~~~~~~~~~~~~~d~Vih~A~~ 93 (340)
T PLN02653 71 DASSLRRWLDDIKPDEVYNLAAQ 93 (340)
T ss_pred CHHHHHHHHHHcCCCEEEECCcc
Confidence 23467888988899999988775
No 401
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=43.63 E-value=20 Score=39.21 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=26.1
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 354 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 354 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
..+..||||+|+|.||+..|+.|. + . .-+|.++|.+
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~----~-~-------~~~ItlI~~~ 42 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLD----P-K-------KYNITVISPR 42 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhC----c-C-------CCeEEEEcCC
Confidence 345679999999999998876652 1 1 2358888865
No 402
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=43.57 E-value=36 Score=36.51 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=29.2
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCc
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 403 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GL 403 (617)
++-.|+|+|||.+|+.+|-.|.+. .|. +++.++|++.+
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~----~g~------~~V~vle~~~~ 66 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKE----HGI------TNVAVLEKGWL 66 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHh----cCC------CeEEEEEcccc
Confidence 456799999999999999888653 253 47889998643
No 403
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=43.48 E-value=2.1e+02 Score=28.90 Aligned_cols=37 Identities=30% Similarity=0.302 Sum_probs=28.6
Q ss_pred CHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEE
Q 007112 428 SLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIF 469 (617)
Q Consensus 428 ~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 469 (617)
.+.+..+. .|++|..|... .|.--++++|+ +..|+|.
T Consensus 255 ~~~~~~~~--ad~~v~~s~~e-~~~~~~~Ea~a--~G~PvI~ 291 (360)
T cd04951 255 DIAAYYNA--ADLFVLSSAWE-GFGLVVAEAMA--CELPVVA 291 (360)
T ss_pred cHHHHHHh--hceEEeccccc-CCChHHHHHHH--cCCCEEE
Confidence 46666766 78999888765 48889999998 5778885
No 404
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=43.46 E-value=78 Score=30.71 Aligned_cols=36 Identities=28% Similarity=0.298 Sum_probs=23.9
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 354 TLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 354 ~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
.+...+++|.|| |..|..+++.+++ .| -++++++++
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~-----~g-------~~V~~~~r~ 39 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAA-----DG-------AEVIVVDIC 39 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 356779999996 5556666666543 25 358888775
No 405
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=43.41 E-value=67 Score=38.99 Aligned_cols=108 Identities=18% Similarity=0.157 Sum_probs=66.4
Q ss_pred CCceEEEeCcChHHHHHHHHHHHH---HHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc--cCCCCCHH
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALE---MSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE--HAPIKSLL 430 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~---~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~--~~~~~~L~ 430 (617)
+..+|.++|-|..|.|++++|.+. +.++.|+.. +=.-++|++|.+.+.+.-++......|... ..+...+.
T Consensus 457 ~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~----~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~ 532 (810)
T PRK09466 457 KRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEF----VLVGVVDSRRSLLNYDGLDASRALAFFDDEAVEWDEESLF 532 (810)
T ss_pred ceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCE----EEEEEEeCCccccCccCCCHHHHHhhHHhhcCCccHHHHH
Confidence 346899999999999999999764 222334321 113467999888776531222222233221 12334577
Q ss_pred HHHhccCCc--EEEeecCCCCCCCHHHHHHHHcCCCCcEEEe
Q 007112 431 DAVKAIKPT--MLMGTSGVGKTFTKEVVEAMASFNEKPVIFA 470 (617)
Q Consensus 431 eaV~~vkPt--vLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 470 (617)
|.+....++ |+|=+++.. -....+.+++. +...+|-|
T Consensus 533 e~i~~~~~~~~vvVd~t~~~-~~~~~~~~aL~--~G~~VVta 571 (810)
T PRK09466 533 LWLRAHPYDELVVLDVTASE-QLALQYPDFAS--HGFHVISA 571 (810)
T ss_pred HHHhhcCCCCcEEEECCCCh-HHHHHHHHHHH--cCCEEEcC
Confidence 788766665 888888733 34556677776 45666654
No 406
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=43.40 E-value=63 Score=33.48 Aligned_cols=94 Identities=17% Similarity=0.215 Sum_probs=50.5
Q ss_pred CceEEEeCcChHHHHHHHH-HHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhc
Q 007112 357 DQTFLFLGAGEAGTGIAEL-IALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKA 435 (617)
Q Consensus 357 d~riv~~GAGsAg~GIA~l-i~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~ 435 (617)
--||.|+|+| |++.. .+.++.+..+. ..-+.++|++ . +......+.|--+ .-..++.|.++.
T Consensus 3 ~irvgiiG~G----~~~~~~~~~~~~~~~~~-----~~~vav~d~~----~---~~a~~~a~~~~~~-~~~~~~~~ll~~ 65 (342)
T COG0673 3 MIRVGIIGAG----GIAGKAHLPALAALGGG-----LELVAVVDRD----P---ERAEAFAEEFGIA-KAYTDLEELLAD 65 (342)
T ss_pred eeEEEEEccc----HHHHHHhHHHHHhCCCc-----eEEEEEecCC----H---HHHHHHHHHcCCC-cccCCHHHHhcC
Confidence 4589999998 44433 33333321110 1234455553 1 1123333333222 345789999999
Q ss_pred cCCcEEEeecCCCCCCCHHHHHH-HHc----CCCCcEEE
Q 007112 436 IKPTMLMGTSGVGKTFTKEVVEA-MAS----FNEKPVIF 469 (617)
Q Consensus 436 vkPtvLIG~S~~~g~Fteevv~~-Ma~----~~erPIIF 469 (617)
-++|+++ ..+.. .+..|++.+ +.+ .||+|+-.
T Consensus 66 ~~iD~V~-Iatp~-~~H~e~~~~AL~aGkhVl~EKPla~ 102 (342)
T COG0673 66 PDIDAVY-IATPN-ALHAELALAALEAGKHVLCEKPLAL 102 (342)
T ss_pred CCCCEEE-EcCCC-hhhHHHHHHHHhcCCEEEEcCCCCC
Confidence 7788877 55534 466666543 432 56888654
No 407
>PRK06753 hypothetical protein; Provisional
Probab=43.38 E-value=29 Score=36.52 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=17.5
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007112 359 TFLFLGAGEAGTGIAELIAL 378 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~ 378 (617)
+|+|+|||.||+..|-.|.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~ 21 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE 21 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 68999999999999888765
No 408
>PRK07045 putative monooxygenase; Reviewed
Probab=43.30 E-value=30 Score=36.87 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=18.4
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007112 358 QTFLFLGAGEAGTGIAELIAL 378 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~ 378 (617)
-+|+|+|||.||+..|-.|.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~ 26 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGA 26 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHh
Confidence 479999999999999988765
No 409
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=43.20 E-value=1.7e+02 Score=30.42 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=28.3
Q ss_pred HHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEE
Q 007112 429 LLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIF 469 (617)
Q Consensus 429 L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 469 (617)
+.+.++. .|++|-.|... .|.--++++|+ +..|||.
T Consensus 266 ~~~~~~~--adi~v~pS~~E-g~~~~~lEAma--~G~Pvv~ 301 (374)
T TIGR03088 266 VPALMQA--LDLFVLPSLAE-GISNTILEAMA--SGLPVIA 301 (374)
T ss_pred HHHHHHh--cCEEEeccccc-cCchHHHHHHH--cCCCEEE
Confidence 5566665 78899877754 58999999999 6889987
No 410
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=43.16 E-value=30 Score=36.34 Aligned_cols=33 Identities=30% Similarity=0.317 Sum_probs=26.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCc
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 403 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GL 403 (617)
.|+|+|||.+|+.+|-.|.+ .| .++.++|+...
T Consensus 2 dvvIIGaGi~G~s~A~~La~-----~g-------~~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAK-----HG-------KKTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeccCC
Confidence 58999999999999988764 25 35888888654
No 411
>PRK07478 short chain dehydrogenase; Provisional
Probab=43.05 E-value=81 Score=31.11 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=23.3
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 354 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 354 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
.+++.++||.||+. ||...++..+.+ .|. +++++++.
T Consensus 3 ~~~~k~~lItGas~---giG~~ia~~l~~-~G~-------~v~~~~r~ 39 (254)
T PRK07478 3 RLNGKVAIITGASS---GIGRAAAKLFAR-EGA-------KVVVGARR 39 (254)
T ss_pred CCCCCEEEEeCCCC---hHHHHHHHHHHH-CCC-------EEEEEeCC
Confidence 46778999999853 344444444444 362 58888764
No 412
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=42.87 E-value=48 Score=35.27 Aligned_cols=117 Identities=15% Similarity=0.199 Sum_probs=65.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccC
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIK 437 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vk 437 (617)
+||.++|.|..|--|++.|... +. +..+-.++.|+.. ++ .+.++...+.+.+|.|.+ .-+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~-----~~---~~~~l~~V~~~~~----~~-------~~~~~~~~~~~~~l~~ll-~~~ 62 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLAD-----AA---QPCQLAALTRNAA----DL-------PPALAGRVALLDGLPGLL-AWR 62 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcC-----CC---CceEEEEEecCCH----HH-------HHHhhccCcccCCHHHHh-hcC
Confidence 6999999999999999987532 11 0123345555531 11 122333234567888864 346
Q ss_pred CcEEEeecCCCCCCCHHHHHHHHcCCCCcEEE---ecCCCCCCCCCCHHHHhccccCcEEEeeC
Q 007112 438 PTMLMGTSGVGKTFTKEVVEAMASFNEKPVIF---ALSNPTSQSECTAEEAYTWSKGQAIFASG 498 (617)
Q Consensus 438 PtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF---aLSNPt~~aEct~edA~~wT~GraifASG 498 (617)
||+++=+.++. ++.+-..+.+.+ ...=+|+ ||+++. =+-.-.++-+-++++..+.||
T Consensus 63 ~DlVVE~A~~~-av~e~~~~iL~~-g~dlvv~SvGALaD~~--~~~~l~~~A~~~g~~i~ipSG 122 (267)
T PRK13301 63 PDLVVEAAGQQ-AIAEHAEGCLTA-GLDMIICSAGALADDA--LRARLIAAAEAGGARIRVPAG 122 (267)
T ss_pred CCEEEECCCHH-HHHHHHHHHHhc-CCCEEEEChhHhcCHH--HHHHHHHHHHhCCCEEEEeCh
Confidence 99999988864 444444444432 2222232 244443 122223344445678888887
No 413
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=42.77 E-value=20 Score=33.46 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=20.0
Q ss_pred HHHHHhccCCcEEEeecCCCCCCCHHHHHHHH
Q 007112 429 LLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMA 460 (617)
Q Consensus 429 L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma 460 (617)
+.+..+.-+-|+||+.|+.|+ |+-+|+++.
T Consensus 95 ~~~~~~~~~gDvli~iS~SG~--s~~vi~a~~ 124 (138)
T PF13580_consen 95 LLALYDIRPGDVLIVISNSGN--SPNVIEAAE 124 (138)
T ss_dssp HHHHTT--TT-EEEEEESSS---SHHHHHHHH
T ss_pred HHHHcCCCCCCEEEEECCCCC--CHHHHHHHH
Confidence 444433345799999999997 789998874
No 414
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=42.77 E-value=64 Score=33.85 Aligned_cols=106 Identities=13% Similarity=0.178 Sum_probs=56.4
Q ss_pred CCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhc-ccCCCCCHHHH
Q 007112 355 LADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH-EHAPIKSLLDA 432 (617)
Q Consensus 355 l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~-~~~~~~~L~ea 432 (617)
+++.+++|.|| |..|..+++.|++. |- -.+++++|++..-...-...+...+..|.. +-.+..++.++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~-----g~-----~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~ 71 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLEN-----YN-----PKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRA 71 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHh-----CC-----CcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHH
Confidence 45678999997 66777777766542 31 136888876522100000001100111111 22223457777
Q ss_pred HhccCCcEEEeecCCCCC----C------------CHHHHHHHHcCCCCcEEEecC
Q 007112 433 VKAIKPTMLMGTSGVGKT----F------------TKEVVEAMASFNEKPVIFALS 472 (617)
Q Consensus 433 V~~vkPtvLIG~S~~~g~----F------------teevv~~Ma~~~erPIIFaLS 472 (617)
++. +|++|=+.+.... + +..+++++.+.+-+.|||.=|
T Consensus 72 ~~~--iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS 125 (324)
T TIGR03589 72 LRG--VDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALST 125 (324)
T ss_pred Hhc--CCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 775 8999977665321 1 235667776665567888544
No 415
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=42.68 E-value=1e+02 Score=31.77 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=25.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
.+|.|+|.|..|..+|..+.. .|. +++++|++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~-----~g~-------~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLK-----AGY-------SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHH-----CCC-------eEEEEcCC
Confidence 479999999999999999864 252 46777764
No 416
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=42.57 E-value=59 Score=33.95 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=26.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
.||.|+|+|.-|-.+|.-|.. .|.- ...+|+.+|+.
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~-----~g~~---~~~~I~v~~r~ 38 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMIN-----KNIV---SPDQIICSDLN 38 (272)
T ss_pred CeEEEECccHHHHHHHHHHHH-----CCCC---CCceEEEECCC
Confidence 379999999999999988864 2531 23468888863
No 417
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=42.57 E-value=33 Score=37.91 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=27.4
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 355 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 355 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
-...+|+|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~-----~g-------~~V~lie~~ 172 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLAR-----KG-------YDVTIFEAR 172 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEccC
Confidence 345799999999999998887753 25 368888875
No 418
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=42.32 E-value=98 Score=34.18 Aligned_cols=77 Identities=12% Similarity=0.197 Sum_probs=44.1
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcc--cCCchhchhhhcc---cCCCC
Q 007112 353 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRK--ESLQHFKKPWAHE---HAPIK 427 (617)
Q Consensus 353 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~--~~L~~~k~~fA~~---~~~~~ 427 (617)
..|.+.|++++|-+.-..++++.|.+. .|+.. +.. .+.... +.+......+... .++..
T Consensus 297 ~~l~gkrv~i~g~~~~~~~l~~~L~~e----lG~~v------v~~------~~~~~~~~~~~~~~~~~~~~~~~i~~D~~ 360 (430)
T cd01981 297 QNLTGKRAFVFGDATHVAAATRILARE----MGFRV------VGA------GTYCKEDAKWFREQATGYCDEALITDDHT 360 (430)
T ss_pred ccccCCeEEEEcChHHHHHHHHHHHHH----cCCEE------Eec------cCCCccHHHHHHHHHHhcCCceEEecCHH
Confidence 357789999999989999999988754 37621 111 111111 0011100001110 01223
Q ss_pred CHHHHHhccCCcEEEeec
Q 007112 428 SLLDAVKAIKPTMLMGTS 445 (617)
Q Consensus 428 ~L~eaV~~vkPtvLIG~S 445 (617)
.+.+.++..+||++||.|
T Consensus 361 e~~~~i~~~~pdliig~~ 378 (430)
T cd01981 361 EVGDMIARTEPELIFGTQ 378 (430)
T ss_pred HHHHHHHhhCCCEEEecc
Confidence 477888999999999965
No 419
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=42.05 E-value=1.2e+02 Score=27.33 Aligned_cols=34 Identities=21% Similarity=0.380 Sum_probs=24.0
Q ss_pred CCcEEEeecCCCCCCCHHHHHHHH--cCCCCcEEEecCC
Q 007112 437 KPTMLMGTSGVGKTFTKEVVEAMA--SFNEKPVIFALSN 473 (617)
Q Consensus 437 kPtvLIG~S~~~g~Fteevv~~Ma--~~~erPIIFaLSN 473 (617)
+.|++|++|-.|. |+|+++.+. +...-||| ++++
T Consensus 43 ~~dl~I~iS~SG~--t~e~i~~~~~a~~~g~~iI-~IT~ 78 (119)
T cd05017 43 RKTLVIAVSYSGN--TEETLSAVEQAKERGAKIV-AITS 78 (119)
T ss_pred CCCEEEEEECCCC--CHHHHHHHHHHHHCCCEEE-EEeC
Confidence 4699999999884 899998864 33344555 4554
No 420
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=41.97 E-value=29 Score=36.64 Aligned_cols=32 Identities=19% Similarity=0.362 Sum_probs=24.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
..|+|+|||.||+..|-.|.+ .|+ ++.++|++
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 37 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ-----SGL-------RVALLAPR 37 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 469999999999999977754 353 57777765
No 421
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=41.92 E-value=30 Score=34.45 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=24.2
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 354 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 354 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
.+++.++||.||++ ||...++..+.+ .|. +++++|++
T Consensus 3 ~~~~k~vlVtGas~---gIG~~ia~~l~~-~G~-------~V~~~~r~ 39 (263)
T PRK06200 3 WLHGQVALITGGGS---GIGRALVERFLA-EGA-------RVAVLERS 39 (263)
T ss_pred CCCCCEEEEeCCCc---hHHHHHHHHHHH-CCC-------EEEEEeCC
Confidence 36778999999754 444555555544 363 58888875
No 422
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=41.68 E-value=96 Score=33.81 Aligned_cols=109 Identities=15% Similarity=0.148 Sum_probs=59.0
Q ss_pred HhCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCc--ccCCch-h-chhhhc-cc
Q 007112 350 LVGGTLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSR--KESLQH-F-KKPWAH-EH 423 (617)
Q Consensus 350 ~~g~~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R--~~~L~~-~-k~~fA~-~~ 423 (617)
-.++..+++||+|.|| |-.|..+++.|++ .| -+++.++++.--.... ...+.. . ...+.. +.
T Consensus 53 ~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~-----~G-------~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 120 (390)
T PLN02657 53 FRSKEPKDVTVLVVGATGYIGKFVVRELVR-----RG-------YNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDV 120 (390)
T ss_pred ccccCCCCCEEEEECCCcHHHHHHHHHHHH-----CC-------CEEEEEEechhhccccchhhHHhhhcCCceEEEeeC
Confidence 3456678899999997 7778888887754 25 3577777653100000 000000 0 011111 22
Q ss_pred CCCCCHHHHHhcc--CCcEEEeecCCC--C---CC------CHHHHHHHHcCCCCcEEEe
Q 007112 424 APIKSLLDAVKAI--KPTMLMGTSGVG--K---TF------TKEVVEAMASFNEKPVIFA 470 (617)
Q Consensus 424 ~~~~~L~eaV~~v--kPtvLIG~S~~~--g---~F------teevv~~Ma~~~erPIIFa 470 (617)
.+..++.++++.. ++|++|=+.+.. + .+ +..+++++.+..-+-+|+.
T Consensus 121 ~d~~~l~~~~~~~~~~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~i 180 (390)
T PLN02657 121 TDADSLRKVLFSEGDPVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLL 180 (390)
T ss_pred CCHHHHHHHHHHhCCCCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEE
Confidence 2234677788765 699998544321 1 11 3467777766554556663
No 423
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=41.68 E-value=40 Score=35.76 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=27.5
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
..++|+|+|+|.||+..|..+.+ .| .++.++|+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 50 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLAC-----LG-------YEVHVYDKL 50 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEeCC
Confidence 45799999999999999888764 25 468889876
No 424
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=41.63 E-value=31 Score=37.98 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=24.9
Q ss_pred EEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 360 FLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 360 iv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+||+|||+||+..|..+.+ .| .++.++|++
T Consensus 3 vvVIGaGpaG~~aA~~aa~-----~g-------~~v~lie~~ 32 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAE-----LG-------ASVAMVERG 32 (463)
T ss_pred EEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 7999999999999888765 25 478899975
No 425
>PRK14852 hypothetical protein; Provisional
Probab=41.58 E-value=25 Score=43.38 Aligned_cols=38 Identities=18% Similarity=0.092 Sum_probs=33.2
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 353 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 353 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
.+|+..||+|+|+|..|.-||..|+.+ |+ ++|.++|-+
T Consensus 328 ~kL~~srVlVvGlGGlGs~ia~~LAra-----GV------G~I~L~D~D 365 (989)
T PRK14852 328 RRLLRSRVAIAGLGGVGGIHLMTLART-----GI------GNFNLADFD 365 (989)
T ss_pred HHHhcCcEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 468899999999999998888888764 76 789999987
No 426
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=41.50 E-value=88 Score=30.82 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=26.7
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 352 GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 352 g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
..++++.+++|.||++ ||...++..+.+ .|. +++++|++
T Consensus 6 ~~~~~~k~ilItGas~---~IG~~la~~l~~-~G~-------~v~~~~r~ 44 (256)
T PRK06124 6 RFSLAGQVALVTGSAR---GLGFEIARALAG-AGA-------HVLVNGRN 44 (256)
T ss_pred ccCCCCCEEEEECCCc---hHHHHHHHHHHH-cCC-------eEEEEeCC
Confidence 4568889999999743 455555555554 363 68888885
No 427
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=41.43 E-value=29 Score=38.46 Aligned_cols=101 Identities=10% Similarity=0.134 Sum_probs=56.0
Q ss_pred HHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhc------
Q 007112 348 LKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH------ 421 (617)
Q Consensus 348 lr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~------ 421 (617)
+.-....|+.+|+.++|-..-.+|+++.|.+ .|+.. .. +++........+.-+.+..
T Consensus 294 ~~~~~~~l~gkrv~i~g~~~~~~~la~~L~e-----lGm~v------~~------~~~~~~~~~~~~~~~~~l~~~~~~~ 356 (435)
T cd01974 294 MTDSHQYLHGKKFALYGDPDFLIGLTSFLLE-----LGMEP------VH------VLTGNGGKRFEKEMQALLDASPYGA 356 (435)
T ss_pred HHHHHHhcCCCEEEEEcChHHHHHHHHHHHH-----CCCEE------EE------EEeCCCCHHHHHHHHHHHhhcCCCC
Confidence 3334446788999999988899999998874 37632 11 1111111111111111111
Q ss_pred -----ccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007112 422 -----EHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPT 475 (617)
Q Consensus 422 -----~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 475 (617)
...+...+++.++..+||++||-|. . +.+|+...-|.| ..+.|.
T Consensus 357 ~~~v~~~~d~~e~~~~i~~~~pDliiG~s~-----~----~~~a~~~gip~v-~~~~P~ 405 (435)
T cd01974 357 GAKVYPGKDLWHLRSLLFTEPVDLLIGNTY-----G----KYIARDTDIPLV-RFGFPI 405 (435)
T ss_pred CcEEEECCCHHHHHHHHhhcCCCEEEECcc-----H----HHHHHHhCCCEE-EeeCCc
Confidence 1122345788889999999999764 1 233333355653 455554
No 428
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=41.35 E-value=33 Score=34.08 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=24.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCc
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 403 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GL 403 (617)
.|+|+|||.||+-.|-.+.+ .|+ ++.++|++..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~-----~g~-------~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD-----KGL-------RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccCC
Confidence 48999999999999877743 364 5778887643
No 429
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=41.32 E-value=30 Score=38.03 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=18.3
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007112 358 QTFLFLGAGEAGTGIAELIAL 378 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~ 378 (617)
-.|+|+|||.||...|-.+.+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~ 26 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAR 26 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHh
Confidence 478999999999999988764
No 430
>PLN02463 lycopene beta cyclase
Probab=41.31 E-value=30 Score=38.75 Aligned_cols=32 Identities=19% Similarity=0.417 Sum_probs=25.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
-.|+|+|||.||..+|..+.+ .|+ ++.++|+.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~-----~Gl-------~V~liE~~ 60 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSE-----AGL-------SVCCIDPS 60 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHH-----CCC-------eEEEeccC
Confidence 479999999999999987754 364 57778875
No 431
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=41.17 E-value=39 Score=40.07 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=29.1
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 354 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 354 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+-.+.+|+|+|||.||+..|..+... | .++.++|+.
T Consensus 428 ~~~~~~V~IIGaGpAGl~aA~~l~~~-----G-------~~V~v~e~~ 463 (752)
T PRK12778 428 EKNGKKVAVIGSGPAGLSFAGDLAKR-----G-------YDVTVFEAL 463 (752)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 34578999999999999999988653 5 368888874
No 432
>PRK07890 short chain dehydrogenase; Provisional
Probab=41.16 E-value=69 Score=31.45 Aligned_cols=36 Identities=19% Similarity=0.409 Sum_probs=25.0
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 355 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 355 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+++++++|.||++ ||...|+..+.+ .|. +++++|+.
T Consensus 3 l~~k~vlItGa~~---~IG~~la~~l~~-~G~-------~V~~~~r~ 38 (258)
T PRK07890 3 LKGKVVVVSGVGP---GLGRTLAVRAAR-AGA-------DVVLAART 38 (258)
T ss_pred cCCCEEEEECCCC---cHHHHHHHHHHH-cCC-------EEEEEeCC
Confidence 5678999999854 455666666554 363 68888864
No 433
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=41.00 E-value=39 Score=35.24 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=30.4
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHH--hccCCCHHhhcCeEEEEccC
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALEMS--KQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~~~--~~~G~s~eeAr~~i~lvD~~ 401 (617)
+..||+++|+|.-|.-+++.|+..-. +.-|.+ .--+|.++|.+
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~---~g~~i~lvD~D 54 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHP---GGLAVTVYDDD 54 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCC---CCCEEEEECCC
Confidence 56899999999999999999987511 001210 00289999987
No 434
>PRK10262 thioredoxin reductase; Provisional
Probab=40.99 E-value=28 Score=36.24 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=20.6
Q ss_pred CCCceEEEeCcChHHHHHHHHHHH
Q 007112 355 LADQTFLFLGAGEAGTGIAELIAL 378 (617)
Q Consensus 355 l~d~riv~~GAGsAg~GIA~li~~ 378 (617)
-+..+|||+|||.||+..|..+.+
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~ 27 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAAR 27 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHH
Confidence 356789999999999999988765
No 435
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=40.98 E-value=1.5e+02 Score=33.69 Aligned_cols=118 Identities=19% Similarity=0.217 Sum_probs=63.7
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhccc--CCCCCHHH
Q 007112 354 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH--APIKSLLD 431 (617)
Q Consensus 354 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~--~~~~~L~e 431 (617)
.+.++||+++|-|-.|+++|+.|.+. | -++++.|.+=.. .....++...+. -......+
T Consensus 4 ~~~~~kv~V~GLG~sG~a~a~~L~~~-----G-------~~v~v~D~~~~~-------~~~~~~~~~~~~i~~~~g~~~~ 64 (448)
T COG0771 4 DFQGKKVLVLGLGKSGLAAARFLLKL-----G-------AEVTVSDDRPAP-------EGLAAQPLLLEGIEVELGSHDD 64 (448)
T ss_pred cccCCEEEEEecccccHHHHHHHHHC-----C-------CeEEEEcCCCCc-------cchhhhhhhccCceeecCccch
Confidence 34589999999999999999999753 6 368888865111 111111111110 01111111
Q ss_pred HHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc-cCcEEEeeCCCCCcceeCCee
Q 007112 432 AVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWS-KGQAIFASGSPFDPVEYNGKV 510 (617)
Q Consensus 432 aV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT-~GraifASGSPF~pv~~~Gk~ 510 (617)
...-..|++|=--|.+ .-++.|.++-+. .-||| +.-|-++... ....|-.||| ||||
T Consensus 65 -~~~~~~d~vV~SPGi~-~~~p~v~~A~~~--gi~i~-----------~dieL~~r~~~~~p~vaITGT-------NGKT 122 (448)
T COG0771 65 -EDLAEFDLVVKSPGIP-PTHPLVEAAKAA--GIEII-----------GDIELFYRLSGEAPIVAITGT-------NGKT 122 (448)
T ss_pred -hccccCCEEEECCCCC-CCCHHHHHHHHc--CCcEE-----------eHHHHHHHhcCCCCEEEEECC-------CchH
Confidence 2222367777544544 245555555443 33343 3344455543 4566777887 7876
Q ss_pred ec
Q 007112 511 FV 512 (617)
Q Consensus 511 ~~ 512 (617)
-+
T Consensus 123 TT 124 (448)
T COG0771 123 TT 124 (448)
T ss_pred HH
Confidence 43
No 436
>PRK12831 putative oxidoreductase; Provisional
Probab=40.98 E-value=35 Score=38.14 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=27.4
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
...+|+|+|||.||+..|..+... | .++.++|+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~-----G-------~~V~v~e~~ 172 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM-----G-------YDVTIFEAL 172 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 467999999999999999888753 5 357888864
No 437
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=40.90 E-value=33 Score=42.60 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=28.3
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 355 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 355 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
-+.+||+|+|||.||+..|..|... |. ++.++|+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~-----G~-------~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARA-----GH-------PVTVFERE 571 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHc-----CC-------eEEEEecc
Confidence 4578999999999999999998652 53 57788865
No 438
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=40.86 E-value=41 Score=35.45 Aligned_cols=145 Identities=19% Similarity=0.287 Sum_probs=84.4
Q ss_pred hCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCC-CCH
Q 007112 351 VGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPI-KSL 429 (617)
Q Consensus 351 ~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~-~~L 429 (617)
-|..++ ++||+||=--|.+||+.|-.. + +|+++|-+ ||-+.+-.+.-.. ..+
T Consensus 38 e~~~~k--~~lI~G~YltG~~iA~~L~~~-----------~--eV~lvDI~------------p~lk~ll~~~i~F~~~~ 90 (252)
T PF06690_consen 38 EGEEFK--QALIFGAYLTGNFIASALSKK-----------C--EVTLVDIH------------PHLKELLNENIKFMEFR 90 (252)
T ss_pred cccccc--eEEEEEEEeehHHHHHHhccC-----------c--eEEEEeCc------------HHHHHHhcCCCceeecc
Confidence 345555 999999999999999888532 2 79999974 2222222110000 111
Q ss_pred HHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCe
Q 007112 430 LDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGK 509 (617)
Q Consensus 430 ~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wT~GraifASGSPF~pv~~~Gk 509 (617)
.+ ..++||++|-++|-||+ +++.++.. + |=+|=.=||. ++-.=...++.. ..
T Consensus 91 ~~--~~~~~DlIID~TGlGGv-~~~~Ls~~---~--p~v~IVEdP~--~~~sD~~I~~~~------------------nt 142 (252)
T PF06690_consen 91 NG--LEGNPDLIIDTTGLGGV-DPDFLSKF---N--PKVFIVEDPK--GDGSDKTIYEIN------------------NT 142 (252)
T ss_pred CC--CCCCCCEEEECCCCCCC-CHHHHhcc---C--CCEEEEECCC--ccCcchhhhhcc------------------cH
Confidence 11 12479999999999997 99888765 3 6677778888 444333333221 11
Q ss_pred eeccC--CCCcccccchh--hHHHHHhCCcccCHHHHHHHHHHHH
Q 007112 510 VFVPG--QGNNAYIFPGL--GLGLIISGAIRVRDEMLLAASEALA 550 (617)
Q Consensus 510 ~~~p~--Q~NN~yiFPGi--glG~l~s~a~~Itd~M~laAA~aLA 550 (617)
.-.+. -+.+..+.=-. |+.+=.||--..|=+.+..|+..+=
T Consensus 143 ~erl~~~~~~~kg~LkT~r~~~~sKTSGTMTLTIdt~r~s~~~i~ 187 (252)
T PF06690_consen 143 EERLNAINGEKKGILKTYRSGLVSKTSGTMTLTIDTLRDSMNEIE 187 (252)
T ss_pred HHHHhhhcccceeEEEEeeccccccccceEEEEHHHHHHHHHHHH
Confidence 11111 12222332223 4555567777788787777665553
No 439
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=40.79 E-value=1.4e+02 Score=29.26 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=24.1
Q ss_pred CCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCC
Q 007112 354 TLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 402 (617)
Q Consensus 354 ~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~G 402 (617)
.+++.+++|.||++ .|..+|+.+ .+ .|. ++.++|++-
T Consensus 5 ~~~~k~vlItGas~~iG~~la~~l----~~-~G~-------~v~~~~~~~ 42 (252)
T PRK08220 5 DFSGKTVWVTGAAQGIGYAVALAF----VE-AGA-------KVIGFDQAF 42 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHH----HH-CCC-------EEEEEecch
Confidence 47788999999854 444455544 33 363 677787764
No 440
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=40.72 E-value=40 Score=35.15 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=25.1
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCc
Q 007112 357 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 403 (617)
Q Consensus 357 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GL 403 (617)
+--++|+|||+||+..|..|.+. |+ ++.+++++=-
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~-----g~-------kV~v~E~~~~ 51 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKA-----GL-------KVAVIERKLS 51 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHH-----TS--------EEEEESSSS
T ss_pred cCCEEEECCChhHHHHHHHHHHC-----CC-------eEEEEecCCC
Confidence 45689999999999999888764 54 6788888733
No 441
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=40.72 E-value=43 Score=38.33 Aligned_cols=79 Identities=13% Similarity=0.241 Sum_probs=47.5
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc---cCCCCCH
Q 007112 353 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE---HAPIKSL 429 (617)
Q Consensus 353 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~---~~~~~~L 429 (617)
..|.+.|++|+|-++-.+|+++.+... .|+. +..++.. .....+.+.+.-+.+... .++...+
T Consensus 301 ~~l~Gkrv~I~gd~~~a~~l~~~L~~E----LGm~-------vv~~g~~---~~~~~~~~~~~~~~~~~~~~i~~D~~ei 366 (513)
T CHL00076 301 QNLTGKKAVVFGDATHAASMTKILARE----MGIR-------VSCAGTY---CKHDAEWFKEQVQGFCDEILITDDHTEV 366 (513)
T ss_pred cccCCCEEEEEcCchHHHHHHHHHHHh----CCCE-------EEEecCc---ccchhHHHHHHHHHhccCcEEecCHHHH
Confidence 678889999999999999999998765 3873 2233321 000000011111111110 1122357
Q ss_pred HHHHhccCCcEEEeec
Q 007112 430 LDAVKAIKPTMLMGTS 445 (617)
Q Consensus 430 ~eaV~~vkPtvLIG~S 445 (617)
.+.|+..+||++||.|
T Consensus 367 ~~~I~~~~pdliiGs~ 382 (513)
T CHL00076 367 GDMIARVEPSAIFGTQ 382 (513)
T ss_pred HHHHHhcCCCEEEECc
Confidence 8889999999999966
No 442
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=40.71 E-value=36 Score=36.42 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=25.2
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 357 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 357 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
..+|+|+|||.||...|-.|.+ .|+ ++.++|+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~l~E~~ 35 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAK-----QGR-------SVAVIEGG 35 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEcCC
Confidence 3579999999999999977754 365 46777754
No 443
>PRK08265 short chain dehydrogenase; Provisional
Probab=40.68 E-value=34 Score=34.19 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=25.0
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 354 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 354 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+++++++||.||.+ ||...|+..+.+ .|. +++++|++
T Consensus 3 ~~~~k~vlItGas~---gIG~~ia~~l~~-~G~-------~V~~~~r~ 39 (261)
T PRK08265 3 GLAGKVAIVTGGAT---LIGAAVARALVA-AGA-------RVAIVDID 39 (261)
T ss_pred CCCCCEEEEECCCC---hHHHHHHHHHHH-CCC-------EEEEEeCC
Confidence 47789999999743 455555555554 363 68888764
No 444
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=40.46 E-value=42 Score=36.33 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=25.9
Q ss_pred EEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCccc
Q 007112 360 FLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIV 405 (617)
Q Consensus 360 iv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~ 405 (617)
|+|+|||.||+.+|-.+.+. ..| .++.++|+.-.+.
T Consensus 2 viIvGaG~AGl~lA~~L~~~---~~g-------~~V~lle~~~~~~ 37 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA---RPD-------FRIRVIEAGRTIG 37 (370)
T ss_pred EEEECccHHHHHHHHHHHhc---CCC-------CeEEEEeCCCCCC
Confidence 79999999999999877643 124 3577777764333
No 445
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=40.45 E-value=36 Score=36.63 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=25.9
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 357 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 357 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
...|+|+|||.||+-.|-.|.. .|+ ++-++++.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~-----~G~-------~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR-----AGL-------DVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEccC
Confidence 3579999999999998888765 374 56777776
No 446
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=40.38 E-value=34 Score=39.07 Aligned_cols=33 Identities=30% Similarity=0.546 Sum_probs=26.9
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 357 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 357 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+-.|+|+|+|..|++||..+... |+ ++.++|+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~r-----G~-------~V~LlEk~ 38 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALR-----GL-------RCILVERH 38 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHc-----CC-------eEEEEECC
Confidence 35699999999999999988753 64 58888875
No 447
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=40.34 E-value=29 Score=36.58 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=17.7
Q ss_pred EEEeCcChHHHHHHHHHHHH
Q 007112 360 FLFLGAGEAGTGIAELIALE 379 (617)
Q Consensus 360 iv~~GAGsAg~GIA~li~~~ 379 (617)
|+|+|||.||+..|-.|.+.
T Consensus 2 v~IvGaG~aGl~~A~~L~~~ 21 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRL 21 (382)
T ss_pred EEEECccHHHHHHHHHHhcC
Confidence 79999999999999888753
No 448
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=40.14 E-value=35 Score=39.70 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=27.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCC
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 402 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~G 402 (617)
..|+|+|||-+|+.+|-.|.+ .|. ++.++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~-----~G~-------~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR-----RGW-------QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH-----CCC-------eEEEEecCC
Confidence 479999999999999998865 363 689999874
No 449
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=40.12 E-value=37 Score=39.71 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=26.9
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
...+|+|+|||.||+..|..+... |. ++.++|+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~-----G~-------~Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK-----GH-------DVTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEecC
Confidence 457999999999999999888642 53 57778764
No 450
>PRK06398 aldose dehydrogenase; Validated
Probab=40.06 E-value=1.6e+02 Score=29.51 Aligned_cols=74 Identities=12% Similarity=0.308 Sum_probs=39.5
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhc-ccCCCCCHHHH
Q 007112 354 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH-EHAPIKSLLDA 432 (617)
Q Consensus 354 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~-~~~~~~~L~ea 432 (617)
+|++++++|.||.+ ||...++..+.+ .| .+++++|++- .+ .. +..+.+ |..+..++.++
T Consensus 3 ~l~gk~vlItGas~---gIG~~ia~~l~~-~G-------~~Vi~~~r~~----~~---~~--~~~~~~~D~~~~~~i~~~ 62 (258)
T PRK06398 3 GLKDKVAIVTGGSQ---GIGKAVVNRLKE-EG-------SNVINFDIKE----PS---YN--DVDYFKVDVSNKEQVIKG 62 (258)
T ss_pred CCCCCEEEEECCCc---hHHHHHHHHHHH-CC-------CeEEEEeCCc----cc---cC--ceEEEEccCCCHHHHHHH
Confidence 47788999999743 344445555544 36 3678777641 11 11 111111 22222345555
Q ss_pred Hhcc-----CCcEEEeecCC
Q 007112 433 VKAI-----KPTMLMGTSGV 447 (617)
Q Consensus 433 V~~v-----kPtvLIG~S~~ 447 (617)
++.+ ++|+||=..+.
T Consensus 63 ~~~~~~~~~~id~li~~Ag~ 82 (258)
T PRK06398 63 IDYVISKYGRIDILVNNAGI 82 (258)
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 5543 68999976654
No 451
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=39.88 E-value=30 Score=36.93 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=26.4
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCC
Q 007112 357 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 402 (617)
Q Consensus 357 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~G 402 (617)
...|+|+|||.||+..|-.|.+ .|+ ++.++|++-
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~-----~G~-------~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALAD-----AGL-------SVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 3579999999999999977653 364 478888763
No 452
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=39.85 E-value=34 Score=35.35 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=28.4
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcc
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI 404 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi 404 (617)
.+-.++|+|||.||+..|..+.+ .| .++.+++++.-+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~-----~G-------~~V~vlEk~~~~ 56 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAK-----NG-------LKVCVLERSLAF 56 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH-----CC-------CcEEEEecCCCC
Confidence 36789999999999999887754 25 468888887543
No 453
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=39.69 E-value=35 Score=37.32 Aligned_cols=31 Identities=26% Similarity=0.267 Sum_probs=25.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
.+||+|||.||+..|..+... | .++.++|+.
T Consensus 3 DvvVIG~G~aGl~aA~~la~~-----G-------~~v~lie~~ 33 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQL-----G-------LKVALVEKE 33 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 589999999999999888642 5 478899983
No 454
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=39.69 E-value=2.2e+02 Score=31.10 Aligned_cols=132 Identities=14% Similarity=0.190 Sum_probs=80.4
Q ss_pred HHhcCCCeeeeeecCCCCcHHHHHHHHcCCCceeec-CccchhHHHHHHHHHHHHHhC-CCCCCceEEEeCcChHHHHHH
Q 007112 296 KQNYGEKVLIQFEDFANHNAFELLSKYSSSHLVFND-DIQGTASVVLAGILSALKLVG-GTLADQTFLFLGAGEAGTGIA 373 (617)
Q Consensus 296 ~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FND-DiQGTaaV~LAgll~Alr~~g-~~l~d~riv~~GAGsAg~GIA 373 (617)
-.+| .++++ +-.+. +-+.+.+.+| .++||.|- |-..=-.=+||=++.-.+..| +++++.+|.++|-+.- +++
T Consensus 97 ls~y-~D~Iv-~R~~~-~~~~~~~a~~-~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD~~~--~v~ 170 (336)
T PRK03515 97 LGRM-YDGIQ-YRGYG-QEIVETLAEY-AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDARN--NMG 170 (336)
T ss_pred HHHh-CcEEE-EEeCC-hHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCCCcC--cHH
Confidence 3456 44443 22332 2334444554 47899993 222333457788887777776 4799999999998633 477
Q ss_pred HHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcc-cC---CCCCHHHHHhccCCcEEEeecC
Q 007112 374 ELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HA---PIKSLLDAVKAIKPTMLMGTSG 446 (617)
Q Consensus 374 ~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~-~~---~~~~L~eaV~~vkPtvLIG~S~ 446 (617)
+-++.++.+ .|+ ++.++-.+|+.-.+ .+-..-+.+++. +. -..++.|+++. .||+.-.+=
T Consensus 171 ~Sl~~~~~~-~g~-------~v~~~~P~~~~~~~---~~~~~~~~~~~~~g~~i~~~~d~~ea~~~--aDvvytd~W 234 (336)
T PRK03515 171 NSLLEAAAL-TGL-------DLRLVAPKACWPEA---ALVTECRALAQKNGGNITLTEDIAEGVKG--ADFIYTDVW 234 (336)
T ss_pred HHHHHHHHH-cCC-------EEEEECCchhcCcH---HHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEecCc
Confidence 777776665 464 68888888774321 121112233432 11 23689999997 999997643
No 455
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=39.63 E-value=31 Score=40.26 Aligned_cols=47 Identities=17% Similarity=0.298 Sum_probs=31.7
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCC-cccCCcccCCc
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG-LIVSSRKESLQ 413 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~G-Li~~~R~~~L~ 413 (617)
++..|+|+|||.||+-.|-.|.+. .|+ ++.++|++- ....+|...|+
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~----~Gi-------~v~IiE~~~~~~~~grA~gl~ 78 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAF----PDI-------TTRIVERKPGRLELGQADGIA 78 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcC----CCC-------cEEEEEcCCCCCCCCeeeEEC
Confidence 356899999999999998887641 265 467788763 33334433343
No 456
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=39.56 E-value=27 Score=39.25 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.1
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHH
Q 007112 354 TLADQTFLFLGAGEAGTGIAELIAL 378 (617)
Q Consensus 354 ~l~d~riv~~GAGsAg~GIA~li~~ 378 (617)
+....+|+|+|||.||+..|..+.+
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~ 31 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRR 31 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHh
Confidence 3456899999999999999988865
No 457
>PRK07774 short chain dehydrogenase; Provisional
Probab=39.41 E-value=46 Score=32.50 Aligned_cols=37 Identities=19% Similarity=0.338 Sum_probs=22.9
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 354 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 354 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
++++.++||.||.. ||...++..+.+ .| .+++++|+.
T Consensus 3 ~~~~k~vlItGasg---~iG~~la~~l~~-~g-------~~vi~~~r~ 39 (250)
T PRK07774 3 RFDDKVAIVTGAAG---GIGQAYAEALAR-EG-------ASVVVADIN 39 (250)
T ss_pred ccCCCEEEEECCCc---hHHHHHHHHHHH-CC-------CEEEEEeCC
Confidence 46778999999732 344444444444 35 358888764
No 458
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=39.30 E-value=82 Score=30.55 Aligned_cols=45 Identities=29% Similarity=0.364 Sum_probs=28.3
Q ss_pred HHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 345 LSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 345 l~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+.++...+.-..++++++.|+|+.|..++++... .| .+++.++++
T Consensus 123 ~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~-----~g-------~~v~~~~~~ 167 (271)
T cd05188 123 YHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKA-----AG-------ARVIVTDRS 167 (271)
T ss_pred HHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHH-----cC-------CeEEEEcCC
Confidence 3445555554578999999999866555544322 24 357777664
No 459
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=39.25 E-value=38 Score=37.52 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=26.9
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 357 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 357 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
.-.+||+|+|+||+..|..+.+. | +++.++|+.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~-----G-------~~v~lie~~ 36 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQL-----G-------LKTALVEKG 36 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEEcc
Confidence 34799999999999999887652 5 579999975
No 460
>PRK14694 putative mercuric reductase; Provisional
Probab=39.23 E-value=40 Score=37.41 Aligned_cols=34 Identities=12% Similarity=0.209 Sum_probs=27.3
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
.+-.++|+|||+||+..|..+.+. | .++-++|+.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~-----g-------~~v~lie~~ 38 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATER-----G-------ARVTLIERG 38 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEEcc
Confidence 345799999999999999888753 5 468899975
No 461
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=39.19 E-value=33 Score=38.54 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=27.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCC
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 402 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~G 402 (617)
..|||+|+|.+|+++|..+.. .|+ ++.+++++-
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~-----rG~-------~V~LlEk~d 39 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAG-----RGL-------KVLLCEKDD 39 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEECCC
Confidence 579999999999999999865 364 588898763
No 462
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=39.10 E-value=75 Score=37.40 Aligned_cols=93 Identities=13% Similarity=0.182 Sum_probs=51.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCCCCCHHHHHhccC
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIK 437 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vk 437 (617)
+||.|+|+|..|..+|..+... |. ..+++.+|++ .++ +...++ +........++.++++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-----G~-----~~~V~~~d~~----~~~---~~~a~~-~g~~~~~~~~~~~~~~~-- 63 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-----GL-----AREVVAVDRR----AKS---LELAVS-LGVIDRGEEDLAEAVSG-- 63 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CCEEEEEECC----hhH---HHHHHH-CCCCCcccCCHHHHhcC--
Confidence 6899999999999999988653 53 2458888874 111 111110 00000122456666654
Q ss_pred CcEEEeecCCCCCCCHHHHHHHHcCC-CCcEEEecC
Q 007112 438 PTMLMGTSGVGKTFTKEVVEAMASFN-EKPVIFALS 472 (617)
Q Consensus 438 PtvLIG~S~~~g~Fteevv~~Ma~~~-erPIIFaLS 472 (617)
+|++| ++..+ ...+++++.++.+. +.-||.-++
T Consensus 64 aDvVi-lavp~-~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 64 ADVIV-LAVPV-LAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred CCEEE-ECCCH-HHHHHHHHHHHHhcCCCcEEEEcC
Confidence 66666 44433 35667777776532 333444343
No 463
>PRK08013 oxidoreductase; Provisional
Probab=39.01 E-value=37 Score=36.53 Aligned_cols=33 Identities=12% Similarity=0.256 Sum_probs=24.9
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 357 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 357 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+-.|+|+|||.||+-.|-.|.+ .|+ ++.++|++
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~-----~G~-------~v~viE~~ 35 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG-----SGL-------RVAVLEQR 35 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh-----CCC-------EEEEEeCC
Confidence 3579999999999999877654 365 46677764
No 464
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=38.76 E-value=38 Score=36.17 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=25.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+|+|+|||-+|+-+|..+.. .| .++.++|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~-----~g-------~~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQ-----AG-------HEVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 68999999999999988754 25 368888885
No 465
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=38.69 E-value=40 Score=36.94 Aligned_cols=33 Identities=30% Similarity=0.341 Sum_probs=26.3
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 357 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 357 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+-.+||+|||.||+..|..+.+. | +++.++|+.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~-----g-------~~v~lie~~ 35 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKL-----G-------KKVALIEKG 35 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 34699999999999999877652 5 578889984
No 466
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=38.44 E-value=39 Score=37.94 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=29.2
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCC
Q 007112 355 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 402 (617)
Q Consensus 355 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~G 402 (617)
+++++|||+|+|..|+-||..|... .++++++-+.+
T Consensus 202 ~~gk~VvVVG~G~Sg~diA~~L~~~------------a~~V~l~~r~~ 237 (461)
T PLN02172 202 FKNEVVVVIGNFASGADISRDIAKV------------AKEVHIASRAS 237 (461)
T ss_pred cCCCEEEEECCCcCHHHHHHHHHHh------------CCeEEEEEeec
Confidence 5789999999999999999888653 26788776654
No 467
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=38.41 E-value=38 Score=37.42 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=26.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
|++|+|+|+||+..|..+.+ .| +++.++|+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~-----~g-------~~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ-----NG-------KNVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh-----CC-------CcEEEEECC
Confidence 79999999999999888765 25 469999975
No 468
>PRK08244 hypothetical protein; Provisional
Probab=38.38 E-value=37 Score=37.73 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=18.4
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007112 358 QTFLFLGAGEAGTGIAELIAL 378 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~ 378 (617)
..|+|+|||.+|+..|-.|.+
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~ 23 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELAL 23 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHH
Confidence 469999999999999988865
No 469
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.27 E-value=40 Score=37.74 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=21.9
Q ss_pred CCCceEEEeCcChHHHHHHHHHHH
Q 007112 355 LADQTFLFLGAGEAGTGIAELIAL 378 (617)
Q Consensus 355 l~d~riv~~GAGsAg~GIA~li~~ 378 (617)
++++|++|+|.|..|.++|++|..
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~ 29 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRA 29 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHH
Confidence 567899999999999999999875
No 470
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=38.24 E-value=98 Score=35.55 Aligned_cols=97 Identities=18% Similarity=0.130 Sum_probs=62.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhccc-C---CCCCHHHHHh
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH-A---PIKSLLDAVK 434 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~-~---~~~~L~eaV~ 434 (617)
+|-|+|-|..|.++|.-|+.. |. ++.++|+. .++ .+++...+++.. . ...++.|+++
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~V~NRt----~~k---~~~l~~~~~~~Ga~~~~~a~s~~e~v~ 68 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEK-----GF-------PISVYNRT----TSK---VDETVERAKKEGNLPLYGFKDPEDFVL 68 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhC-----CC-------eEEEECCC----HHH---HHHHHHhhhhcCCcccccCCCHHHHHh
Confidence 699999999999999999753 64 57777763 222 223322222211 1 3468999997
Q ss_pred cc-CCcEEEeecCCCCCCCHHHHHHHHc-CCCCcEEEecCCCC
Q 007112 435 AI-KPTMLMGTSGVGKTFTKEVVEAMAS-FNEKPVIFALSNPT 475 (617)
Q Consensus 435 ~v-kPtvLIG~S~~~g~Fteevv~~Ma~-~~erPIIFaLSNPt 475 (617)
.+ +|+++| ++=..+.-.++|+..+.. ..+.-||.=+||=.
T Consensus 69 ~l~~~dvIi-~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~ 110 (493)
T PLN02350 69 SIQKPRSVI-ILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEW 110 (493)
T ss_pred cCCCCCEEE-EECCCcHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 64 588888 444444556677654443 34677999999854
No 471
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=38.16 E-value=96 Score=29.82 Aligned_cols=35 Identities=37% Similarity=0.404 Sum_probs=22.3
Q ss_pred CCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 355 LADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 355 l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+.+.++||.|| |..|..+++.+. + .|. ++++++++
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~----~-~g~-------~v~~~~r~ 38 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLA----A-DGA-------KVVIYDSN 38 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHH----H-CCC-------EEEEEeCC
Confidence 45678999997 445555555554 3 353 47888775
No 472
>PRK07588 hypothetical protein; Provisional
Probab=38.07 E-value=39 Score=36.05 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=17.6
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007112 359 TFLFLGAGEAGTGIAELIAL 378 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~ 378 (617)
+|+|+|||.||+..|-.|.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~ 21 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRR 21 (391)
T ss_pred eEEEECccHHHHHHHHHHHH
Confidence 79999999999999988764
No 473
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=38.05 E-value=38 Score=33.76 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=22.8
Q ss_pred CCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 354 TLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 354 ~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
++++.++||.||+. -|..+|+.++ + .|. +++++|++
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~----~-~G~-------~V~~~~r~ 38 (262)
T TIGR03325 2 RLKGEVVLVTGGASGLGRAIVDRFV----A-EGA-------RVAVLDKS 38 (262)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHH----H-CCC-------EEEEEeCC
Confidence 36788999999743 3444555443 3 363 57888764
No 474
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=37.99 E-value=1.4e+02 Score=29.68 Aligned_cols=76 Identities=18% Similarity=0.211 Sum_probs=41.4
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhch-hhhcccCCCCCHHHH
Q 007112 354 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKK-PWAHEHAPIKSLLDA 432 (617)
Q Consensus 354 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~-~fA~~~~~~~~L~ea 432 (617)
.|++.++||.||++ ||...++..+.+ .| -+++++|++.- + +...+. .+.-|..+..++.++
T Consensus 6 ~l~~k~vlItG~s~---gIG~~la~~l~~-~G-------~~v~~~~~~~~----~---~~~~~~~~~~~D~~~~~~~~~~ 67 (266)
T PRK06171 6 NLQGKIIIVTGGSS---GIGLAIVKELLA-NG-------ANVVNADIHGG----D---GQHENYQFVPTDVSSAEEVNHT 67 (266)
T ss_pred cCCCCEEEEeCCCC---hHHHHHHHHHHH-CC-------CEEEEEeCCcc----c---cccCceEEEEccCCCHHHHHHH
Confidence 47788999999754 555666666655 36 36777776521 1 111111 111122222345555
Q ss_pred Hhcc-----CCcEEEeecCC
Q 007112 433 VKAI-----KPTMLMGTSGV 447 (617)
Q Consensus 433 V~~v-----kPtvLIG~S~~ 447 (617)
++.+ ++|+||=+.+.
T Consensus 68 ~~~~~~~~g~id~li~~Ag~ 87 (266)
T PRK06171 68 VAEIIEKFGRIDGLVNNAGI 87 (266)
T ss_pred HHHHHHHcCCCCEEEECCcc
Confidence 5543 67999977664
No 475
>PRK08263 short chain dehydrogenase; Provisional
Probab=37.89 E-value=77 Score=31.91 Aligned_cols=34 Identities=9% Similarity=0.210 Sum_probs=19.9
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 357 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 357 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+.+++|.||. . ||...++..+.+ .| .++++++++
T Consensus 3 ~k~vlItGas-g--~iG~~~a~~l~~-~g-------~~V~~~~r~ 36 (275)
T PRK08263 3 EKVWFITGAS-R--GFGRAWTEAALE-RG-------DRVVATARD 36 (275)
T ss_pred CCEEEEeCCC-C--hHHHHHHHHHHH-CC-------CEEEEEECC
Confidence 4578999863 2 344455555544 25 357777764
No 476
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=37.89 E-value=42 Score=37.73 Aligned_cols=34 Identities=15% Similarity=0.316 Sum_probs=27.2
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
...+++|+|+|.||+..|..|.. .|. +++++|+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~-----~g~-------~V~v~e~~ 175 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR-----AGH-------TVTVFERE 175 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-----cCC-------eEEEEecC
Confidence 35799999999999999988864 253 58888865
No 477
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=37.80 E-value=56 Score=36.51 Aligned_cols=85 Identities=15% Similarity=0.267 Sum_probs=55.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchh---chhhhc-ccCCCCCHHHHH
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF---KKPWAH-EHAPIKSLLDAV 433 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~---k~~fA~-~~~~~~~L~eaV 433 (617)
.+||++|||-.|-.||..|++- |- .+|++.|+. .+..+.+... +..... |..+.+.|.++|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-----~d------~~V~iAdRs----~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li 66 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-----GD------GEVTIADRS----KEKCARIAELIGGKVEALQVDAADVDALVALI 66 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-----CC------ceEEEEeCC----HHHHHHHHhhccccceeEEecccChHHHHHHH
Confidence 4799999999999999998752 32 689988885 1111111111 122221 344556899999
Q ss_pred hccCCcEEEeecCCCCCCCHHHHHHHHc
Q 007112 434 KAIKPTMLMGTSGVGKTFTKEVVEAMAS 461 (617)
Q Consensus 434 ~~vkPtvLIG~S~~~g~Fteevv~~Ma~ 461 (617)
++ .++.|-+-. +-++..++++-.+
T Consensus 67 ~~--~d~VIn~~p--~~~~~~i~ka~i~ 90 (389)
T COG1748 67 KD--FDLVINAAP--PFVDLTILKACIK 90 (389)
T ss_pred hc--CCEEEEeCC--chhhHHHHHHHHH
Confidence 98 588886654 4578888877654
No 478
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=37.80 E-value=40 Score=37.12 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=22.8
Q ss_pred EEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcc
Q 007112 360 FLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI 404 (617)
Q Consensus 360 iv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi 404 (617)
|||+|+|.||+.-|-..+. .| .++.|+++.+-+
T Consensus 2 VVVvGgG~aG~~AAi~AAr-----~G-------~~VlLiE~~~~l 34 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAAR-----AG-------AKVLLIEKGGFL 34 (428)
T ss_dssp EEEE--SHHHHHHHHHHHH-----TT-------S-EEEE-SSSSS
T ss_pred EEEECccHHHHHHHHHHHH-----CC-------CEEEEEECCccC
Confidence 7999999999888766654 36 478999998865
No 479
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=37.79 E-value=32 Score=36.85 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=25.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
..|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~ 34 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQG-----SGL-------EVLLLDGG 34 (405)
T ss_pred ccEEEECccHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 369999999999999987754 364 57777775
No 480
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=37.78 E-value=36 Score=35.58 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=23.9
Q ss_pred EEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCC
Q 007112 360 FLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 402 (617)
Q Consensus 360 iv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~G 402 (617)
|+|+|||.||+-.|-.|.+ .|+ ++.++|+.-
T Consensus 2 ViIvGaG~aGl~~A~~L~~-----~G~-------~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALAR-----SGL-------KIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 7999999999999977764 364 466777763
No 481
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=37.74 E-value=49 Score=30.38 Aligned_cols=31 Identities=29% Similarity=0.391 Sum_probs=24.8
Q ss_pred EEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCC
Q 007112 360 FLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 402 (617)
Q Consensus 360 iv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~G 402 (617)
|+|+|||+.|.-+|-.|.++ | .++.++++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-----g-------~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-----G-------HDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-----T-------CEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-----C-------CceEEEEccc
Confidence 78999999999998888652 4 4588888765
No 482
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=37.56 E-value=63 Score=37.88 Aligned_cols=109 Identities=21% Similarity=0.252 Sum_probs=67.1
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhc-----------
Q 007112 354 TLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH----------- 421 (617)
Q Consensus 354 ~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~----------- 421 (617)
-+++++|++-|| ||.|-.++++|+.. + .++|.++|++=. ++..-.+++.+
T Consensus 247 ~~~gK~vLVTGagGSiGsel~~qil~~-----~------p~~i~l~~~~E~-------~~~~i~~el~~~~~~~~~~~~i 308 (588)
T COG1086 247 MLTGKTVLVTGGGGSIGSELCRQILKF-----N------PKEIILFSRDEY-------KLYLIDMELREKFPELKLRFYI 308 (588)
T ss_pred HcCCCEEEEeCCCCcHHHHHHHHHHhc-----C------CCEEEEecCchH-------HHHHHHHHHHhhCCCcceEEEe
Confidence 367899999987 57888888888764 3 478999987521 22222233322
Q ss_pred -ccCCCCCHHHHHhccCCcEEEeecCCC---------------CCC-CHHHHHHHHcCCCCcEEEecC-----CCCCCCC
Q 007112 422 -EHAPIKSLLDAVKAIKPTMLMGTSGVG---------------KTF-TKEVVEAMASFNEKPVIFALS-----NPTSQSE 479 (617)
Q Consensus 422 -~~~~~~~L~eaV~~vkPtvLIG~S~~~---------------g~F-teevv~~Ma~~~erPIIFaLS-----NPt~~aE 479 (617)
+-.+...+.++++..|||+.+=..+-- ++| |+.++++-.+ |.-.=...+| |||+--=
T Consensus 309 gdVrD~~~~~~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~-~~V~~~V~iSTDKAV~PtNvmG 387 (588)
T COG1086 309 GDVRDRDRVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIK-NGVKKFVLISTDKAVNPTNVMG 387 (588)
T ss_pred cccccHHHHHHHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHH-hCCCEEEEEecCcccCCchHhh
Confidence 112234699999999999999776532 334 5556655333 3333334455 7876443
Q ss_pred CC
Q 007112 480 CT 481 (617)
Q Consensus 480 ct 481 (617)
+|
T Consensus 388 aT 389 (588)
T COG1086 388 AT 389 (588)
T ss_pred HH
Confidence 33
No 483
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=37.53 E-value=41 Score=36.83 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=26.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
-.+||+|+|+||+..|..+.+. | .++.++|++
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~-----g-------~~V~lie~~ 35 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKA-----G-------WRVALIEQS 35 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 4699999999999999888653 5 468999975
No 484
>PRK06185 hypothetical protein; Provisional
Probab=37.52 E-value=39 Score=36.11 Aligned_cols=34 Identities=18% Similarity=0.328 Sum_probs=26.0
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCC
Q 007112 357 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 402 (617)
Q Consensus 357 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~G 402 (617)
+..|+|+|||.+|...|-.|.+ .|+ ++.++|++.
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~-----~G~-------~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLAR-----AGV-------DVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecCC
Confidence 4679999999999999877654 364 467788763
No 485
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=37.42 E-value=74 Score=35.32 Aligned_cols=87 Identities=11% Similarity=0.088 Sum_probs=47.4
Q ss_pred HHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchh-----
Q 007112 344 ILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKP----- 418 (617)
Q Consensus 344 ll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~----- 418 (617)
+..++.-....|++.|++++|.++-.-.++.++ ++.|+.. ..+ |.-.... +.....++.
T Consensus 287 ~~~~l~~~~~~L~Gkrv~i~~g~~~~~~~~~~l-----~elGmev-------v~~---g~~~~~~-~~~~~~~~~~~~~~ 350 (421)
T cd01976 287 MEAVIAKYRPRLEGKTVMLYVGGLRPRHYIGAY-----EDLGMEV-------VGT---GYEFAHR-DDYERTEVIPKEGT 350 (421)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHH-----HHCCCEE-------EEE---EeecCCH-HHHhhHHhhcCCce
Confidence 455666667889999999998776555666533 2358732 111 0000000 001111100
Q ss_pred hhcccCCCCCHHHHHhccCCcEEEeecC
Q 007112 419 WAHEHAPIKSLLDAVKAIKPTMLMGTSG 446 (617)
Q Consensus 419 fA~~~~~~~~L~eaV~~vkPtvLIG~S~ 446 (617)
..-+..+...+++.++..|||++||-|-
T Consensus 351 ~i~~~~d~~e~~~~i~~~~pDliig~~~ 378 (421)
T cd01976 351 LLYDDVTHYELEEFVKRLKPDLIGSGIK 378 (421)
T ss_pred EEEcCCCHHHHHHHHHHhCCCEEEecCc
Confidence 0001122346889999999999999765
No 486
>PRK11445 putative oxidoreductase; Provisional
Probab=37.33 E-value=31 Score=36.56 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=17.3
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007112 359 TFLFLGAGEAGTGIAELIAL 378 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~ 378 (617)
.|+|+|||.||...|..|..
T Consensus 3 dV~IvGaGpaGl~~A~~La~ 22 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAG 22 (351)
T ss_pred eEEEECCCHHHHHHHHHHhc
Confidence 58999999999999987754
No 487
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=37.30 E-value=25 Score=38.86 Aligned_cols=138 Identities=22% Similarity=0.343 Sum_probs=75.7
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhh-----cCeEEEEccCCccc--CCcc--cCCchhchhhhcc----
Q 007112 356 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEA-----RKKIWLVDSKGLIV--SSRK--ESLQHFKKPWAHE---- 422 (617)
Q Consensus 356 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA-----r~~i~lvD~~GLi~--~~R~--~~L~~~k~~fA~~---- 422 (617)
+..++|++|.|++|+|+|..+..-+-+. .+-.-|- .+-.|-+=--||-. ++|. .+|-+-...|-++
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g-~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~ekv~~ 116 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSG-SVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIKEKVKE 116 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCC-ceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHHHHHHh
Confidence 4689999999999999999987755331 1111111 12244433445432 2222 2344444444431
Q ss_pred ------------cC------------------CCCCHHHHHhccCCcEEEeecCCCCCC-CHHHHHHHHcCCCCcEEEec
Q 007112 423 ------------HA------------------PIKSLLDAVKAIKPTMLMGTSGVGKTF-TKEVVEAMASFNEKPVIFAL 471 (617)
Q Consensus 423 ------------~~------------------~~~~L~eaV~~vkPtvLIG~S~~~g~F-teevv~~Ma~~~erPIIFaL 471 (617)
++ .++.|.||.+. | |+.+.-.-| -+.+-++.-..++--.||..
T Consensus 117 f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~t--P----~VcSnYSpkyvdk~y~~~~~fk~GNAIfTf 190 (446)
T KOG3851|consen 117 FNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDT--P----GVCSNYSPKYVDKVYKELMNFKKGNAIFTF 190 (446)
T ss_pred cCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhccC--C----CcccccChHHHHHHHHHHHhccCCceEEec
Confidence 01 12378899887 7 433322122 23344555567788899999
Q ss_pred CCCCCCCCCCHHHHh-------cc----ccCcEEEeeCCC
Q 007112 472 SNPTSQSECTAEEAY-------TW----SKGQAIFASGSP 500 (617)
Q Consensus 472 SNPt~~aEct~edA~-------~w----T~GraifASGSP 500 (617)
-|---||---|+.+. .. ++-..||+|+-|
T Consensus 191 PntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~ 230 (446)
T KOG3851|consen 191 PNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLP 230 (446)
T ss_pred CCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCcc
Confidence 884444444443322 11 334579999866
No 488
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=37.27 E-value=43 Score=35.91 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=26.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
..|+|+|||-+|+.+|-.|.+.. .| .++.++|+.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~---~g-------~~V~llE~~ 36 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERY---PG-------ARIAVLEKE 36 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhC---CC-------CeEEEEeCC
Confidence 46999999999999998887531 13 478899986
No 489
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=37.27 E-value=40 Score=35.46 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=25.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCC
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 402 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~G 402 (617)
.|+|+|||-+|+.+|-.|.+ .| .++.++|+..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~-----~G-------~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAAR-----RG-------LSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeCCC
Confidence 48999999999999988864 25 3588888753
No 490
>PRK08339 short chain dehydrogenase; Provisional
Probab=37.12 E-value=67 Score=32.40 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=24.1
Q ss_pred CCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 353 GTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 353 ~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
.+|+++++||.||++ .|..+|+.+ .+ .|. ++.++|++
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l----~~-~G~-------~V~~~~r~ 41 (263)
T PRK08339 4 IDLSGKLAFTTASSKGIGFGVARVL----AR-AGA-------DVILLSRN 41 (263)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHH----HH-CCC-------EEEEEeCC
Confidence 457888999999864 444455444 43 363 58888764
No 491
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=37.09 E-value=40 Score=37.20 Aligned_cols=34 Identities=35% Similarity=0.604 Sum_probs=26.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcc
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI 404 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi 404 (617)
+++|+|||-+|.=||+.+.+ .| +++.+||+.--|
T Consensus 3 d~lIVGaGlsG~V~A~~a~~-----~g-------k~VLIvekR~HI 36 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQ-----LG-------KRVLIVEKRNHI 36 (374)
T ss_pred cEEEECCchhHHHHHHHHHH-----cC-------CEEEEEeccccC
Confidence 58999999999999994332 35 788888876444
No 492
>PRK06523 short chain dehydrogenase; Provisional
Probab=36.58 E-value=1.2e+02 Score=29.97 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=24.8
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 353 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 353 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
.+++++++||.||.. ||...++..+.+ .|. ++++++++
T Consensus 5 ~~~~~k~vlItGas~---gIG~~ia~~l~~-~G~-------~v~~~~r~ 42 (260)
T PRK06523 5 LELAGKRALVTGGTK---GIGAATVARLLE-AGA-------RVVTTARS 42 (260)
T ss_pred cCCCCCEEEEECCCC---chhHHHHHHHHH-CCC-------EEEEEeCC
Confidence 468889999999743 344455555544 363 58888775
No 493
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=36.55 E-value=44 Score=35.81 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=18.7
Q ss_pred CceEEEeCcChHHHHHHHHHHH
Q 007112 357 DQTFLFLGAGEAGTGIAELIAL 378 (617)
Q Consensus 357 d~riv~~GAGsAg~GIA~li~~ 378 (617)
..+|+|+|||.||+-.|-.|.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~ 23 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL 23 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh
Confidence 3679999999999999877754
No 494
>PLN02366 spermidine synthase
Probab=36.50 E-value=80 Score=33.88 Aligned_cols=92 Identities=16% Similarity=0.265 Sum_probs=48.6
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCCcccCCcccCCchhchhhhcccCC--CCCHHHHHh
Q 007112 357 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAP--IKSLLDAVK 434 (617)
Q Consensus 357 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~--~~~L~eaV~ 434 (617)
..|+|++|.|..+ +++.+++. -+ .+++.+||-+.-+.+--++.++.....+..+.-. ..+-.+.++
T Consensus 92 pkrVLiIGgG~G~--~~rellk~----~~------v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~ 159 (308)
T PLN02366 92 PKKVLVVGGGDGG--VLREIARH----SS------VEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK 159 (308)
T ss_pred CCeEEEEcCCccH--HHHHHHhC----CC------CCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh
Confidence 5799999999865 34444332 12 2689999988765532212232211112111100 123333344
Q ss_pred cc---CCcEEEeecCC-----CCCCCHHHHHHHH
Q 007112 435 AI---KPTMLMGTSGV-----GKTFTKEVVEAMA 460 (617)
Q Consensus 435 ~v---kPtvLIG~S~~-----~g~Fteevv~~Ma 460 (617)
.. +=|++|--+.. ..+||++..+.+.
T Consensus 160 ~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~ 193 (308)
T PLN02366 160 NAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVA 193 (308)
T ss_pred hccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHH
Confidence 32 45888864433 2357888888875
No 495
>PLN02852 ferredoxin-NADP+ reductase
Probab=36.42 E-value=26 Score=40.01 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=31.2
Q ss_pred HhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 350 LVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 350 ~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
....+-...||+|+|||.||+..|..|.... .| -+|.++|+.
T Consensus 19 ~~~~~~~~~~VaIVGaGPAGl~AA~~L~~~~---~g-------~~Vtv~E~~ 60 (491)
T PLN02852 19 SSSSTSEPLHVCVVGSGPAGFYTADKLLKAH---DG-------ARVDIIERL 60 (491)
T ss_pred CCCCCCCCCcEEEECccHHHHHHHHHHHhhC---CC-------CeEEEEecC
Confidence 3444455689999999999999999887531 24 368888876
No 496
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=36.37 E-value=39 Score=35.87 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=25.8
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 357 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 357 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
+..|+|+|||.||+..|-.+.+ .|+ ++.++|+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~-----~G~-------~V~liE~~ 37 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQ-----HGF-------SVAVLEHA 37 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 4579999999999999877653 364 58888875
No 497
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=36.35 E-value=2.9e+02 Score=29.60 Aligned_cols=113 Identities=19% Similarity=0.256 Sum_probs=72.2
Q ss_pred HHHHHHHHcCCCceeecC-ccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcC
Q 007112 315 AFELLSKYSSSHLVFNDD-IQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARK 393 (617)
Q Consensus 315 Af~lL~ryr~~~~~FNDD-iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~ 393 (617)
+.+.+.+| .++|++|=+ -..=-.=+|+=++.-.+..| ++++.||.++|-.+ -+++-++.++.+ .|+
T Consensus 107 ~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g-~l~g~~v~~vGd~~---~v~~Sl~~~l~~-~g~------- 173 (304)
T TIGR00658 107 DVEELAKY-ASVPVINGLTDLFHPCQALADLLTIIEHFG-KLKGVKVVYVGDGN---NVCNSLMLAGAK-LGM------- 173 (304)
T ss_pred HHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhC-CCCCcEEEEEeCCC---chHHHHHHHHHH-cCC-------
Confidence 44455555 468999942 22222446777776666666 49999999999873 488888877766 464
Q ss_pred eEEEEccCCcccCCcccCCchhchhhhcc-c---CCCCCHHHHHhccCCcEEEeec
Q 007112 394 KIWLVDSKGLIVSSRKESLQHFKKPWAHE-H---APIKSLLDAVKAIKPTMLMGTS 445 (617)
Q Consensus 394 ~i~lvD~~GLi~~~R~~~L~~~k~~fA~~-~---~~~~~L~eaV~~vkPtvLIG~S 445 (617)
++.++-.+++.-.. ...+..+.+++. + ....++.|+++. .||+.-.+
T Consensus 174 ~v~~~~P~~~~~~~---~~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvy~~~ 224 (304)
T TIGR00658 174 DVVVATPEGYEPDA---DIVKKAQEIAKENGGSVELTHDPVEAVKG--ADVIYTDV 224 (304)
T ss_pred EEEEECCchhcCCH---HHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcC
Confidence 68888888773321 122222233332 1 123689999997 99998754
No 498
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=36.19 E-value=41 Score=36.48 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=25.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccCC
Q 007112 359 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 402 (617)
Q Consensus 359 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~G 402 (617)
-|+|+|||.||+..|..|.++ |. .+.++|+-+
T Consensus 3 siaIVGaGiAGl~aA~~L~~a-----G~-------~vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA-----GR-------EVTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc-----Cc-------EEEEEEcCC
Confidence 489999999999999988764 64 367787653
No 499
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=36.17 E-value=96 Score=33.16 Aligned_cols=100 Identities=18% Similarity=0.202 Sum_probs=51.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcc-------CCcccCCcccCCchhchhhhcccCCCCCHH
Q 007112 358 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDS-------KGLIVSSRKESLQHFKKPWAHEHAPIKSLL 430 (617)
Q Consensus 358 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~-------~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~ 430 (617)
.||.|+|||+-|.-.|-.|.++ | . .=.+|.-++ +||...+-.. ........ .+-.
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~-----g-~----~V~~~~R~~~~~~l~~~GL~i~~~~~------~~~~~~~~--~~~~ 62 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA-----G-H----DVTLLVRSRRLEALKKKGLRIEDEGG------NFTTPVVA--ATDA 62 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-----C-C----eEEEEecHHHHHHHHhCCeEEecCCC------cccccccc--ccCh
Confidence 3899999999999888887664 4 1 012333333 3666554321 00111000 0001
Q ss_pred HHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCC-CcEEEecCCCCCCCC
Q 007112 431 DAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNE-KPVIFALSNPTSQSE 479 (617)
Q Consensus 431 eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~e-rPIIFaLSNPt~~aE 479 (617)
+.. .++|++| ++... -.++++++.+..+.. ..+|..|-|=-..-|
T Consensus 63 ~~~--~~~Dlvi-v~vKa-~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e 108 (307)
T COG1893 63 EAL--GPADLVI-VTVKA-YQLEEALPSLAPLLGPNTVVLFLQNGLGHEE 108 (307)
T ss_pred hhc--CCCCEEE-EEecc-ccHHHHHHHhhhcCCCCcEEEEEeCCCcHHH
Confidence 111 1456555 22222 457777777765443 335666777665555
No 500
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=36.13 E-value=95 Score=30.68 Aligned_cols=38 Identities=29% Similarity=0.441 Sum_probs=24.5
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccC
Q 007112 353 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 401 (617)
Q Consensus 353 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD~~ 401 (617)
.++++.++||.||+. ||...++..+.+ .|. +++++|++
T Consensus 4 ~~~~~k~vlVtGas~---gIG~~la~~l~~-~G~-------~v~~~~r~ 41 (260)
T PRK12823 4 QRFAGKVVVVTGAAQ---GIGRGVALRAAA-EGA-------RVVLVDRS 41 (260)
T ss_pred cccCCCEEEEeCCCc---hHHHHHHHHHHH-CCC-------EEEEEeCc
Confidence 347788999999743 444445555544 363 58888875
Done!