BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007114
         (617 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YO0|A Chain A, Salmonella Enterica Sada 1049-1304 Fused To Gcn4 Adaptors
           (Sadak9-Cfi)
 pdb|2YO1|A Chain A, Salmonella Enterica Sada 1049-1304 Fused To Gcn4 Adaptors
           (Sadak9-Cfii)
 pdb|2YO1|B Chain B, Salmonella Enterica Sada 1049-1304 Fused To Gcn4 Adaptors
           (Sadak9-Cfii)
 pdb|2YO1|C Chain C, Salmonella Enterica Sada 1049-1304 Fused To Gcn4 Adaptors
           (Sadak9-Cfii)
          Length = 322

 Score = 32.3 bits (72), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 15/108 (13%)

Query: 480 IGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQQTKKDPSIVRHDSTTASFE 539
           IG+ T V+ + +  +A+         +S+AM N     +  QT         D T  + +
Sbjct: 77  IGLNTLVMADAINGIAIGSNARANHANSIAMGNGSQTTRGAQT---------DYTAYNMD 127

Query: 540 RESKEVTELSAAVSEEDKRQ-KNVSAGETEVASVDLKSEVGTLRRIDA 586
                V E S   SE+ +RQ  NV+AG  +  +V+    VG L+  DA
Sbjct: 128 TPQNSVGEFSVG-SEDGQRQITNVAAGSADTDAVN----VGQLKVTDA 170


>pdb|2CZT|A Chain A, Lipocalin-Type Prostaglandin D Synthase
 pdb|2CZU|A Chain A, Lipocalin-Type Prostaglandin D Synthase
 pdb|2CZU|B Chain B, Lipocalin-Type Prostaglandin D Synthase
 pdb|2RQ0|A Chain A, Solution Structure Of Mouse Lipocalin-Type Prostaglandin D
           Synthase Possessing The Intrinsic Disulfide Bond
          Length = 167

 Score = 28.9 bits (63), Expect = 9.3,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 391 HAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKV--SKADSRADSAEEKLIILSEANAGL 448
           H+V+  EA+ ++  +L+S  +  +   QD ++    S+  +  D  +EK    S+A    
Sbjct: 94  HSVSVVEANYDEYALLFS--RGTKGPGQDFRMATLYSRTQTLKDELKEKFTTFSKAQGLT 151

Query: 449 TEEISFLRDRLECLE 463
            E+I FL    +C++
Sbjct: 152 EEDIVFLPQPDKCIQ 166


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.126    0.319 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,013,563
Number of Sequences: 62578
Number of extensions: 499519
Number of successful extensions: 1630
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 1514
Number of HSP's gapped (non-prelim): 122
length of query: 617
length of database: 14,973,337
effective HSP length: 105
effective length of query: 512
effective length of database: 8,402,647
effective search space: 4302155264
effective search space used: 4302155264
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)