Query 007114
Match_columns 617
No_of_seqs 58 out of 60
Neff 3.1
Searched_HMMs 46136
Date Thu Mar 28 19:07:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00261 Tropomyosin: Tropomyo 99.2 2.1E-08 4.6E-13 98.8 26.3 225 237-471 8-232 (237)
2 PRK02224 chromosome segregatio 98.8 0.00022 4.9E-09 80.8 44.6 86 257-342 355-447 (880)
3 TIGR02169 SMC_prok_A chromosom 98.8 0.00014 3E-09 83.1 42.0 116 239-354 246-362 (1164)
4 TIGR02168 SMC_prok_B chromosom 98.8 0.00027 5.8E-09 80.2 42.1 41 450-490 965-1005(1179)
5 TIGR02169 SMC_prok_A chromosom 98.7 0.00015 3.3E-09 82.8 39.5 54 213-266 150-206 (1164)
6 PRK02224 chromosome segregatio 98.7 0.00092 2E-08 76.0 45.4 154 311-468 472-645 (880)
7 TIGR02168 SMC_prok_B chromosom 98.6 0.00056 1.2E-08 77.7 38.6 14 458-471 966-979 (1179)
8 TIGR00606 rad50 rad50. This fa 98.6 0.0033 7.1E-08 75.6 46.4 403 110-520 596-1078(1311)
9 KOG0161 Myosin class II heavy 98.5 0.00062 1.4E-08 84.4 38.5 248 261-521 1607-1875(1930)
10 COG1196 Smc Chromosome segrega 98.5 0.0026 5.5E-08 75.7 40.9 47 427-473 947-993 (1163)
11 COG1196 Smc Chromosome segrega 98.4 0.0022 4.7E-08 76.3 39.0 198 314-511 793-1006(1163)
12 TIGR00606 rad50 rad50. This fa 98.3 0.021 4.6E-07 68.9 42.2 62 121-182 711-776 (1311)
13 PHA02562 46 endonuclease subun 98.2 0.003 6.4E-08 68.0 31.1 101 371-475 304-404 (562)
14 PF00261 Tropomyosin: Tropomyo 98.2 0.00078 1.7E-08 66.9 24.5 212 294-519 2-227 (237)
15 KOG0161 Myosin class II heavy 98.2 0.035 7.5E-07 69.7 42.8 279 228-520 1426-1747(1930)
16 PF07888 CALCOCO1: Calcium bin 98.0 0.029 6.2E-07 63.0 33.4 38 234-271 161-198 (546)
17 PF10174 Cast: RIM-binding pro 97.9 0.053 1.1E-06 63.1 34.2 165 318-495 437-607 (775)
18 KOG4674 Uncharacterized conser 97.9 0.17 3.6E-06 63.5 39.2 334 147-490 63-487 (1822)
19 PRK04863 mukB cell division pr 97.9 0.097 2.1E-06 64.7 37.4 247 208-467 271-530 (1486)
20 PRK01156 chromosome segregatio 97.9 0.11 2.4E-06 60.0 40.6 33 151-183 410-442 (895)
21 PF00038 Filament: Intermediat 97.8 0.055 1.2E-06 54.7 32.8 109 329-457 196-304 (312)
22 PRK03918 chromosome segregatio 97.8 0.13 2.7E-06 58.8 45.9 13 110-122 174-186 (880)
23 PF05701 WEMBL: Weak chloropla 97.8 0.049 1.1E-06 60.3 30.5 129 233-370 58-186 (522)
24 PF10174 Cast: RIM-binding pro 97.8 0.17 3.6E-06 59.2 41.1 256 147-428 180-460 (775)
25 PF07888 CALCOCO1: Calcium bin 97.7 0.025 5.5E-07 63.5 27.1 136 378-520 281-417 (546)
26 KOG0971 Microtubule-associated 97.7 0.046 9.9E-07 64.4 29.7 195 233-464 234-476 (1243)
27 KOG0996 Structural maintenance 97.7 0.046 9.9E-07 65.6 30.3 204 294-518 385-606 (1293)
28 PRK03918 chromosome segregatio 97.7 0.18 3.9E-06 57.5 46.5 30 155-184 403-432 (880)
29 KOG1003 Actin filament-coating 97.6 0.011 2.5E-07 59.0 20.1 159 312-470 9-199 (205)
30 KOG1003 Actin filament-coating 97.5 0.026 5.7E-07 56.6 21.3 182 325-520 8-196 (205)
31 PF00038 Filament: Intermediat 97.5 0.15 3.3E-06 51.6 28.5 96 418-520 198-294 (312)
32 PF12718 Tropomyosin_1: Tropom 97.4 0.011 2.4E-07 55.6 16.6 111 330-443 2-122 (143)
33 PF14915 CCDC144C: CCDC144C pr 97.3 0.17 3.7E-06 53.5 25.7 210 249-520 75-288 (305)
34 KOG0995 Centromere-associated 97.3 0.33 7.3E-06 55.0 29.4 105 403-510 441-549 (581)
35 PF09726 Macoilin: Transmembra 97.3 0.071 1.5E-06 61.4 24.4 209 295-506 427-653 (697)
36 KOG0996 Structural maintenance 97.3 0.085 1.9E-06 63.5 24.9 223 228-472 776-1013(1293)
37 PF12128 DUF3584: Protein of u 97.2 0.86 1.9E-05 55.2 37.8 63 111-183 482-544 (1201)
38 PF14662 CCDC155: Coiled-coil 97.2 0.12 2.6E-06 51.6 21.3 133 371-507 41-190 (193)
39 COG5185 HEC1 Protein involved 97.1 0.7 1.5E-05 51.9 28.6 101 406-509 485-589 (622)
40 PRK01156 chromosome segregatio 97.1 0.91 2E-05 52.6 43.5 43 346-388 343-385 (895)
41 PRK04863 mukB cell division pr 97.1 1.5 3.3E-05 54.8 40.4 214 149-387 299-527 (1486)
42 PF01576 Myosin_tail_1: Myosin 97.1 0.00014 3E-09 84.2 0.0 364 102-499 272-707 (859)
43 PRK11637 AmiB activator; Provi 97.0 0.59 1.3E-05 50.1 26.7 44 311-354 44-87 (428)
44 KOG4674 Uncharacterized conser 97.0 1.8 3.9E-05 54.8 40.9 352 147-521 728-1131(1822)
45 PF09726 Macoilin: Transmembra 97.0 0.071 1.5E-06 61.4 20.6 34 222-258 420-453 (697)
46 PF15070 GOLGA2L5: Putative go 97.0 0.28 6.1E-06 56.0 24.7 50 275-324 11-60 (617)
47 KOG0977 Nuclear envelope prote 96.8 0.39 8.4E-06 54.3 23.5 287 147-501 46-368 (546)
48 PF12718 Tropomyosin_1: Tropom 96.7 0.11 2.3E-06 49.1 16.2 93 308-400 15-107 (143)
49 PRK04778 septation ring format 96.7 1.6 3.5E-05 48.9 34.4 52 340-391 308-366 (569)
50 PHA02562 46 endonuclease subun 96.7 1.3 2.9E-05 48.0 27.3 39 146-184 170-208 (562)
51 KOG0933 Structural maintenance 96.7 2.5 5.4E-05 51.1 32.2 138 313-467 828-982 (1174)
52 PF05557 MAD: Mitotic checkpoi 96.6 0.00049 1.1E-08 77.7 0.0 164 349-520 257-423 (722)
53 KOG0994 Extracellular matrix g 96.6 3 6.6E-05 51.1 33.7 139 155-317 1410-1552(1758)
54 KOG0946 ER-Golgi vesicle-tethe 96.6 0.38 8.2E-06 56.5 22.0 129 302-437 801-947 (970)
55 KOG0250 DNA repair protein RAD 96.5 3 6.5E-05 50.6 33.1 82 350-431 282-367 (1074)
56 PRK11637 AmiB activator; Provi 96.3 1.4 3E-05 47.4 23.7 9 581-589 342-350 (428)
57 PF05483 SCP-1: Synaptonemal c 96.2 3.6 7.8E-05 48.1 42.6 310 137-482 304-665 (786)
58 KOG0946 ER-Golgi vesicle-tethe 96.1 0.72 1.6E-05 54.4 21.3 164 287-451 647-828 (970)
59 PRK04778 septation ring format 96.1 3.4 7.3E-05 46.4 36.1 99 328-427 310-409 (569)
60 KOG0976 Rho/Rac1-interacting s 96.0 4.9 0.00011 48.0 30.3 160 343-502 167-336 (1265)
61 KOG0250 DNA repair protein RAD 96.0 5.6 0.00012 48.4 28.7 55 433-487 398-452 (1074)
62 PF05622 HOOK: HOOK protein; 95.9 0.002 4.2E-08 73.0 0.0 62 403-464 358-419 (713)
63 KOG0612 Rho-associated, coiled 95.6 8.6 0.00019 47.5 27.6 23 479-501 671-693 (1317)
64 PF09728 Taxilin: Myosin-like 95.5 4 8.6E-05 43.1 30.0 173 331-520 110-303 (309)
65 PF01576 Myosin_tail_1: Myosin 95.4 0.0039 8.5E-08 72.5 0.0 215 236-457 186-447 (859)
66 PF14662 CCDC155: Coiled-coil 95.4 3.4 7.4E-05 41.7 21.3 119 311-429 64-186 (193)
67 KOG0933 Structural maintenance 95.4 9.4 0.0002 46.5 42.3 156 117-303 317-472 (1174)
68 PF10473 CENP-F_leu_zip: Leuci 95.2 2.1 4.5E-05 41.0 17.2 83 371-467 22-104 (140)
69 COG1579 Zn-ribbon protein, pos 95.2 2.8 6.1E-05 43.3 19.3 132 374-505 18-151 (239)
70 KOG0978 E3 ubiquitin ligase in 95.2 8.9 0.00019 45.0 39.1 230 277-523 376-621 (698)
71 PF05010 TACC: Transforming ac 95.2 4.2 9E-05 41.1 21.0 42 298-339 14-55 (207)
72 PF14915 CCDC144C: CCDC144C pr 95.1 4 8.7E-05 43.6 20.5 124 222-348 104-248 (305)
73 PF05557 MAD: Mitotic checkpoi 95.0 0.19 4.1E-06 57.4 11.6 34 435-468 502-535 (722)
74 KOG0971 Microtubule-associated 94.9 12 0.00026 45.3 31.5 260 228-520 274-556 (1243)
75 KOG0612 Rho-associated, coiled 94.6 16 0.00035 45.3 35.7 236 234-485 519-784 (1317)
76 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.6 3.7 8E-05 37.9 16.7 76 445-520 54-129 (132)
77 KOG0977 Nuclear envelope prote 94.4 12 0.00026 42.8 26.9 299 105-457 29-384 (546)
78 TIGR03185 DNA_S_dndD DNA sulfu 94.4 12 0.00026 42.7 32.5 66 402-467 392-466 (650)
79 PF09787 Golgin_A5: Golgin sub 94.3 11 0.00024 42.0 26.9 192 305-520 212-423 (511)
80 PF09728 Taxilin: Myosin-like 94.3 8.6 0.00019 40.7 30.5 191 281-471 109-307 (309)
81 PF13514 AAA_27: AAA domain 94.2 17 0.00037 44.0 30.8 62 448-511 894-955 (1111)
82 PLN02939 transferase, transfer 94.2 14 0.00031 44.9 24.5 202 281-520 158-393 (977)
83 KOG0994 Extracellular matrix g 94.0 21 0.00046 44.4 33.4 125 214-338 1509-1636(1758)
84 PF08317 Spc7: Spc7 kinetochor 93.8 10 0.00022 39.9 20.8 45 325-370 119-163 (325)
85 PF12128 DUF3584: Protein of u 93.7 23 0.0005 43.5 45.7 50 406-455 626-675 (1201)
86 KOG4643 Uncharacterized coiled 93.6 23 0.0005 43.4 32.8 40 478-517 526-567 (1195)
87 PF05701 WEMBL: Weak chloropla 93.6 15 0.00033 41.2 34.4 213 212-470 196-420 (522)
88 PF10168 Nup88: Nuclear pore c 93.6 5.7 0.00012 46.4 19.4 135 207-345 533-670 (717)
89 PRK09039 hypothetical protein; 93.3 6.2 0.00014 42.1 17.8 12 448-459 188-199 (343)
90 KOG4438 Centromere-associated 93.2 17 0.00037 40.7 21.2 169 315-484 139-360 (446)
91 PF15619 Lebercilin: Ciliary p 93.0 11 0.00023 37.7 19.6 132 303-443 8-146 (194)
92 PRK09039 hypothetical protein; 92.7 16 0.00035 39.1 20.4 61 446-506 140-200 (343)
93 TIGR00634 recN DNA repair prot 92.7 20 0.00043 40.3 21.5 46 266-311 162-210 (563)
94 PF05483 SCP-1: Synaptonemal c 92.7 26 0.00057 41.4 40.8 337 104-469 130-571 (786)
95 COG0419 SbcC ATPase involved i 92.6 27 0.00059 41.4 46.7 26 108-133 270-295 (908)
96 PF15070 GOLGA2L5: Putative go 92.6 25 0.00054 40.8 37.2 84 434-517 291-381 (617)
97 KOG4593 Mitotic checkpoint pro 92.5 27 0.00059 41.2 27.8 66 282-357 115-180 (716)
98 KOG0982 Centrosomal protein Nu 92.5 12 0.00025 42.1 18.7 116 318-466 219-334 (502)
99 TIGR01005 eps_transp_fam exopo 92.5 13 0.00029 42.6 20.1 49 141-189 176-226 (754)
100 PRK10698 phage shock protein P 91.6 16 0.00036 36.8 18.3 150 282-434 9-185 (222)
101 PF10473 CENP-F_leu_zip: Leuci 91.4 1.6 3.5E-05 41.7 9.6 72 451-522 18-92 (140)
102 KOG0976 Rho/Rac1-interacting s 91.3 41 0.00089 40.8 38.8 331 147-502 96-521 (1265)
103 PF05911 DUF869: Plant protein 91.1 40 0.00086 40.3 26.3 102 282-383 585-690 (769)
104 PRK11281 hypothetical protein; 91.1 48 0.001 41.1 28.5 147 318-467 139-309 (1113)
105 KOG4673 Transcription factor T 90.9 42 0.00091 40.0 30.1 148 310-467 590-756 (961)
106 PF05911 DUF869: Plant protein 90.9 42 0.00092 40.1 28.5 32 227-258 441-472 (769)
107 PF06818 Fez1: Fez1; InterPro 90.8 8.4 0.00018 39.2 14.4 40 476-515 129-168 (202)
108 PLN02939 transferase, transfer 90.8 15 0.00032 44.7 18.7 13 455-467 298-310 (977)
109 PF09787 Golgin_A5: Golgin sub 90.6 33 0.00072 38.4 23.0 146 310-466 158-304 (511)
110 PF15397 DUF4618: Domain of un 90.4 26 0.00057 36.8 19.3 141 346-499 10-159 (258)
111 COG0419 SbcC ATPase involved i 90.2 47 0.001 39.5 45.9 48 221-268 387-434 (908)
112 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.0 16 0.00034 33.8 16.4 60 445-508 68-131 (132)
113 PF13851 GAS: Growth-arrest sp 89.6 11 0.00023 37.6 13.9 104 415-519 27-130 (201)
114 PRK10884 SH3 domain-containing 89.5 4.2 9.1E-05 40.9 11.2 77 371-471 91-167 (206)
115 PF08614 ATG16: Autophagy prot 89.4 4.9 0.00011 39.1 11.3 83 410-502 111-193 (194)
116 TIGR03007 pepcterm_ChnLen poly 89.3 29 0.00063 37.8 18.1 18 478-495 362-379 (498)
117 TIGR02977 phageshock_pspA phag 89.1 26 0.00056 35.0 20.7 117 318-434 56-185 (219)
118 COG3883 Uncharacterized protei 89.1 33 0.00072 36.2 23.5 187 314-520 38-227 (265)
119 KOG1029 Endocytic adaptor prot 88.8 64 0.0014 39.1 23.9 125 367-491 445-576 (1118)
120 PF08614 ATG16: Autophagy prot 88.6 4 8.7E-05 39.7 10.1 87 371-457 100-186 (194)
121 KOG0804 Cytoplasmic Zn-finger 88.6 14 0.0003 41.7 15.1 94 377-481 348-441 (493)
122 KOG0962 DNA repair protein RAD 88.1 85 0.0018 39.7 29.5 112 233-354 934-1047(1294)
123 KOG0999 Microtubule-associated 87.8 62 0.0013 37.9 27.5 232 286-522 67-344 (772)
124 PF06008 Laminin_I: Laminin Do 87.7 34 0.00074 34.7 24.2 110 234-347 49-158 (264)
125 PRK10929 putative mechanosensi 87.6 84 0.0018 39.1 25.8 150 318-467 106-289 (1109)
126 PF05622 HOOK: HOOK protein; 87.5 0.26 5.6E-06 56.4 1.4 150 318-467 350-526 (713)
127 KOG0018 Structural maintenance 87.4 86 0.0019 39.0 26.6 135 280-427 653-833 (1141)
128 KOG0249 LAR-interacting protei 87.2 41 0.00089 40.2 18.3 87 325-412 109-202 (916)
129 PF09730 BicD: Microtubule-ass 87.2 22 0.00048 42.0 16.5 99 300-398 20-153 (717)
130 TIGR03007 pepcterm_ChnLen poly 87.0 50 0.0011 35.9 25.4 27 373-399 204-230 (498)
131 PF08317 Spc7: Spc7 kinetochor 86.8 45 0.00098 35.2 23.0 137 222-368 127-263 (325)
132 PF12325 TMF_TATA_bd: TATA ele 86.6 23 0.00051 33.1 13.3 93 319-418 21-113 (120)
133 KOG4360 Uncharacterized coiled 86.6 14 0.00029 42.4 13.8 51 374-424 199-249 (596)
134 KOG0963 Transcription factor/C 86.6 73 0.0016 37.4 34.2 244 97-363 11-270 (629)
135 PF06160 EzrA: Septation ring 86.4 65 0.0014 36.6 40.1 119 341-466 305-430 (560)
136 PF11559 ADIP: Afadin- and alp 86.3 28 0.00062 32.4 14.0 39 318-356 63-101 (151)
137 PF08647 BRE1: BRE1 E3 ubiquit 85.8 5.1 0.00011 35.5 8.3 90 234-323 7-96 (96)
138 smart00787 Spc7 Spc7 kinetocho 85.0 50 0.0011 35.3 16.5 57 403-465 227-286 (312)
139 PF15294 Leu_zip: Leucine zipp 84.2 63 0.0014 34.5 19.8 91 414-504 131-237 (278)
140 COG4477 EzrA Negative regulato 84.2 89 0.0019 36.3 30.7 191 270-467 195-434 (570)
141 TIGR00634 recN DNA repair prot 83.7 83 0.0018 35.5 22.1 47 284-330 159-205 (563)
142 PF12325 TMF_TATA_bd: TATA ele 83.4 36 0.00078 31.9 13.0 89 402-490 17-111 (120)
143 PF04012 PspA_IM30: PspA/IM30 83.0 49 0.0011 32.4 18.6 133 282-438 8-149 (221)
144 PRK10884 SH3 domain-containing 83.0 9 0.00019 38.6 9.6 50 307-356 118-167 (206)
145 PF11559 ADIP: Afadin- and alp 82.9 30 0.00066 32.2 12.4 61 448-508 85-145 (151)
146 KOG0980 Actin-binding protein 82.9 1.3E+02 0.0027 37.0 23.7 97 398-494 449-549 (980)
147 PF13851 GAS: Growth-arrest sp 82.7 55 0.0012 32.7 21.7 56 329-387 28-83 (201)
148 KOG0978 E3 ubiquitin ligase in 82.6 1.1E+02 0.0025 36.3 35.1 68 442-513 558-625 (698)
149 PF04156 IncA: IncA protein; 82.4 41 0.00089 32.1 13.4 12 325-336 106-117 (191)
150 PF06008 Laminin_I: Laminin Do 82.1 62 0.0013 32.9 24.6 65 290-354 21-85 (264)
151 KOG0243 Kinesin-like protein [ 81.1 1.5E+02 0.0033 36.8 24.8 225 286-520 320-603 (1041)
152 TIGR03017 EpsF chain length de 80.8 84 0.0018 33.6 19.0 44 245-288 158-201 (444)
153 KOG0804 Cytoplasmic Zn-finger 80.7 22 0.00048 40.2 12.3 101 314-417 347-451 (493)
154 PF10186 Atg14: UV radiation r 80.7 63 0.0014 32.1 17.4 24 593-616 255-278 (302)
155 TIGR01005 eps_transp_fam exopo 80.7 1.2E+02 0.0026 35.2 26.4 57 373-429 237-302 (754)
156 PF10146 zf-C4H2: Zinc finger- 80.3 21 0.00045 36.7 11.2 75 443-517 15-95 (230)
157 PF10168 Nup88: Nuclear pore c 80.3 78 0.0017 37.4 17.1 71 438-508 627-711 (717)
158 TIGR01843 type_I_hlyD type I s 80.0 80 0.0017 32.8 20.4 18 451-468 218-235 (423)
159 KOG0963 Transcription factor/C 79.8 1.4E+02 0.0029 35.3 36.2 139 145-341 17-158 (629)
160 PF15619 Lebercilin: Ciliary p 79.7 70 0.0015 32.0 20.4 41 330-370 14-54 (194)
161 COG1842 PspA Phage shock prote 79.4 79 0.0017 32.5 16.0 99 322-420 32-139 (225)
162 COG1579 Zn-ribbon protein, pos 79.0 87 0.0019 32.7 20.3 89 408-504 83-171 (239)
163 PLN03229 acetyl-coenzyme A car 78.9 28 0.00061 41.4 12.9 35 372-410 694-728 (762)
164 PF06160 EzrA: Septation ring 78.8 1.3E+02 0.0027 34.4 32.7 160 354-520 217-417 (560)
165 KOG4593 Mitotic checkpoint pro 78.8 1.5E+02 0.0033 35.4 31.3 111 368-492 393-503 (716)
166 KOG0018 Structural maintenance 78.1 1.9E+02 0.0042 36.2 26.2 118 374-501 357-474 (1141)
167 TIGR03185 DNA_S_dndD DNA sulfu 78.1 1.4E+02 0.0029 34.4 33.1 26 367-392 392-417 (650)
168 KOG0964 Structural maintenance 77.7 2E+02 0.0042 36.0 25.8 106 265-370 251-370 (1200)
169 PF02994 Transposase_22: L1 tr 76.9 4.5 9.9E-05 43.5 5.6 53 415-467 137-189 (370)
170 PF13863 DUF4200: Domain of un 76.7 56 0.0012 29.2 13.1 67 402-468 40-106 (126)
171 PF04111 APG6: Autophagy prote 76.2 29 0.00064 36.7 11.3 18 573-591 273-290 (314)
172 PF13514 AAA_27: AAA domain 76.1 2E+02 0.0043 35.3 35.6 33 244-276 743-775 (1111)
173 COG4942 Membrane-bound metallo 75.6 1.5E+02 0.0032 33.5 27.2 64 293-356 38-101 (420)
174 KOG0980 Actin-binding protein 75.6 2.1E+02 0.0045 35.3 26.1 100 381-487 446-552 (980)
175 PRK10869 recombination and rep 74.3 1.6E+02 0.0036 33.5 21.0 36 268-303 160-195 (553)
176 PF07989 Microtub_assoc: Micro 74.2 18 0.00038 31.4 7.5 55 316-370 2-57 (75)
177 PF05335 DUF745: Protein of un 73.5 1.1E+02 0.0023 30.9 14.0 103 361-470 62-164 (188)
178 PF15272 BBP1_C: Spindle pole 72.8 1.2E+02 0.0025 31.1 14.1 96 351-473 60-155 (196)
179 KOG1850 Myosin-like coiled-coi 71.7 1.7E+02 0.0036 32.4 31.2 136 340-488 121-260 (391)
180 PF12777 MT: Microtubule-bindi 70.3 1.5E+02 0.0034 31.5 21.5 93 371-463 219-311 (344)
181 PF13747 DUF4164: Domain of un 70.1 21 0.00046 31.6 7.3 44 325-368 36-79 (89)
182 PF10267 Tmemb_cc2: Predicted 70.1 1.2E+02 0.0027 33.7 14.5 59 368-428 253-318 (395)
183 KOG1029 Endocytic adaptor prot 69.3 2.8E+02 0.0061 34.1 27.9 27 403-429 530-556 (1118)
184 PF09789 DUF2353: Uncharacteri 69.2 99 0.0021 33.6 13.2 144 368-520 4-150 (319)
185 KOG0239 Kinesin (KAR3 subfamil 69.0 2.5E+02 0.0054 33.3 21.9 138 371-520 173-310 (670)
186 PF04849 HAP1_N: HAP1 N-termin 68.4 1.8E+02 0.0039 31.5 21.1 105 370-484 164-268 (306)
187 PF15290 Syntaphilin: Golgi-lo 67.9 46 0.00099 35.8 10.2 71 312-427 73-143 (305)
188 COG2433 Uncharacterized conser 67.4 1.1E+02 0.0024 36.1 13.8 35 437-471 475-509 (652)
189 KOG1899 LAR transmembrane tyro 67.3 78 0.0017 37.6 12.6 86 371-463 109-194 (861)
190 PRK11281 hypothetical protein; 67.2 3.4E+02 0.0073 34.2 41.5 154 249-405 126-331 (1113)
191 TIGR02680 conserved hypothetic 66.3 3.6E+02 0.0079 34.2 27.2 49 304-352 732-780 (1353)
192 PF04849 HAP1_N: HAP1 N-termin 65.8 2E+02 0.0044 31.2 23.3 50 311-360 164-214 (306)
193 PF09304 Cortex-I_coil: Cortex 65.6 66 0.0014 30.2 9.6 60 402-468 10-69 (107)
194 PRK09841 cryptic autophosphory 65.2 2.8E+02 0.006 32.5 19.2 13 457-469 311-323 (726)
195 PF14197 Cep57_CLD_2: Centroso 64.6 44 0.00095 28.6 7.8 55 311-365 9-63 (69)
196 TIGR01000 bacteriocin_acc bact 64.3 2.2E+02 0.0049 31.1 20.7 22 446-467 239-260 (457)
197 PRK15422 septal ring assembly 63.9 74 0.0016 28.5 9.2 50 417-466 27-76 (79)
198 KOG0243 Kinesin-like protein [ 63.4 3.9E+02 0.0084 33.6 24.2 57 446-502 574-631 (1041)
199 PF10146 zf-C4H2: Zinc finger- 62.9 1.2E+02 0.0026 31.4 11.9 76 376-465 28-103 (230)
200 KOG4677 Golgi integral membran 61.7 3E+02 0.0066 31.8 26.1 275 209-520 185-462 (554)
201 PF10481 CENP-F_N: Cenp-F N-te 61.1 2E+02 0.0043 31.2 13.3 15 461-475 180-194 (307)
202 PF07798 DUF1640: Protein of u 60.7 1.7E+02 0.0036 28.4 15.4 99 410-508 46-150 (177)
203 PF04012 PspA_IM30: PspA/IM30 60.0 1.8E+02 0.0039 28.6 17.7 152 277-435 21-185 (221)
204 PF09177 Syntaxin-6_N: Syntaxi 59.3 1.1E+02 0.0025 26.8 9.7 61 362-426 34-95 (97)
205 PRK11085 magnesium/nickel/coba 59.2 49 0.0011 35.2 8.8 77 101-185 128-204 (316)
206 PF07798 DUF1640: Protein of u 58.6 1.2E+02 0.0025 29.5 10.5 58 312-370 85-145 (177)
207 PF08826 DMPK_coil: DMPK coile 58.1 71 0.0015 27.0 7.8 53 309-386 7-59 (61)
208 PF04582 Reo_sigmaC: Reovirus 58.0 8.6 0.00019 41.5 3.0 103 268-370 31-133 (326)
209 PF14197 Cep57_CLD_2: Centroso 57.7 60 0.0013 27.8 7.4 63 325-387 2-68 (69)
210 PF05667 DUF812: Protein of un 57.6 3.7E+02 0.0081 31.5 27.7 42 374-422 551-592 (594)
211 PF07989 Microtub_assoc: Micro 57.2 56 0.0012 28.4 7.2 63 410-472 9-72 (75)
212 TIGR01843 type_I_hlyD type I s 56.4 2.5E+02 0.0055 29.2 20.5 29 493-521 243-271 (423)
213 PF09730 BicD: Microtubule-ass 56.4 4.3E+02 0.0093 31.8 41.8 196 318-520 269-480 (717)
214 PF00769 ERM: Ezrin/radixin/mo 56.3 2.5E+02 0.0053 29.0 14.9 20 497-521 174-193 (246)
215 PF05667 DUF812: Protein of un 56.0 3.9E+02 0.0085 31.3 23.6 67 450-520 447-522 (594)
216 PF02050 FliJ: Flagellar FliJ 55.4 1.3E+02 0.0027 25.4 9.2 56 372-429 18-73 (123)
217 KOG0249 LAR-interacting protei 55.3 4.7E+02 0.01 32.0 21.8 161 286-458 3-185 (916)
218 KOG4673 Transcription factor T 55.2 4.7E+02 0.01 31.9 30.6 32 454-485 609-640 (961)
219 COG2433 Uncharacterized conser 55.1 2.1E+02 0.0046 33.9 13.3 21 447-467 471-491 (652)
220 PF05010 TACC: Transforming ac 54.7 2.5E+02 0.0055 28.7 20.8 160 325-494 6-205 (207)
221 COG1842 PspA Phage shock prote 54.5 2.6E+02 0.0057 28.8 17.1 137 298-434 36-185 (225)
222 KOG0995 Centromere-associated 54.4 4.3E+02 0.0093 31.2 33.3 140 261-400 353-537 (581)
223 COG4026 Uncharacterized protei 53.8 72 0.0016 33.7 8.6 73 310-385 131-203 (290)
224 PRK10361 DNA recombination pro 53.8 4E+02 0.0086 30.6 18.6 19 437-455 173-191 (475)
225 PF05278 PEARLI-4: Arabidopsis 53.1 3.2E+02 0.0069 29.3 14.0 51 372-429 213-263 (269)
226 PF02994 Transposase_22: L1 tr 53.0 37 0.00079 36.8 6.7 60 371-444 142-201 (370)
227 PF04582 Reo_sigmaC: Reovirus 52.9 24 0.00052 38.3 5.3 53 318-370 32-84 (326)
228 PF02050 FliJ: Flagellar FliJ 52.7 1.4E+02 0.003 25.1 13.9 67 368-434 47-113 (123)
229 COG4477 EzrA Negative regulato 52.1 4.6E+02 0.0099 30.9 33.5 212 114-337 141-405 (570)
230 KOG4643 Uncharacterized coiled 51.7 6E+02 0.013 32.1 37.3 167 162-359 283-453 (1195)
231 PF15397 DUF4618: Domain of un 51.7 3.2E+02 0.007 29.0 24.9 108 362-469 101-212 (258)
232 PF14992 TMCO5: TMCO5 family 51.6 3.4E+02 0.0074 29.3 18.2 38 319-356 9-46 (280)
233 KOG0239 Kinesin (KAR3 subfamil 51.6 4.9E+02 0.011 31.0 17.0 89 348-457 226-314 (670)
234 TIGR02680 conserved hypothetic 51.1 6.3E+02 0.014 32.2 31.0 38 143-180 728-765 (1353)
235 PF13166 AAA_13: AAA domain 50.8 4.3E+02 0.0094 30.2 21.4 90 404-495 366-455 (712)
236 PF04508 Pox_A_type_inc: Viral 50.2 14 0.0003 26.2 2.0 19 450-468 1-19 (23)
237 PRK03947 prefoldin subunit alp 49.2 2.2E+02 0.0047 26.3 12.5 22 448-469 92-113 (140)
238 PRK09841 cryptic autophosphory 49.2 3.6E+02 0.0077 31.7 14.2 43 244-286 253-295 (726)
239 PF05278 PEARLI-4: Arabidopsis 49.2 1.8E+02 0.0039 31.1 10.8 66 385-464 198-263 (269)
240 PF09177 Syntaxin-6_N: Syntaxi 49.1 1.9E+02 0.004 25.5 10.0 82 406-495 10-94 (97)
241 PF07544 Med9: RNA polymerase 49.1 98 0.0021 27.0 7.5 43 100-142 6-51 (83)
242 PF09738 DUF2051: Double stran 48.9 2E+02 0.0044 30.9 11.3 80 415-494 77-156 (302)
243 KOG4360 Uncharacterized coiled 48.8 3.6E+02 0.0078 31.6 13.6 69 436-508 219-287 (596)
244 KOG1962 B-cell receptor-associ 48.6 1.3E+02 0.0028 31.2 9.4 67 441-511 149-215 (216)
245 PF01544 CorA: CorA-like Mg2+ 48.0 2.4E+02 0.0051 27.8 10.9 55 404-467 114-168 (292)
246 PF00170 bZIP_1: bZIP transcri 47.8 49 0.0011 26.9 5.2 32 436-467 33-64 (64)
247 PF07106 TBPIP: Tat binding pr 47.7 2.5E+02 0.0054 26.8 10.7 35 437-471 101-137 (169)
248 PF06005 DUF904: Protein of un 47.5 1.9E+02 0.0041 25.1 9.3 44 417-467 27-70 (72)
249 PF13870 DUF4201: Domain of un 47.4 2.7E+02 0.0058 26.8 17.8 17 312-328 18-34 (177)
250 PF04642 DUF601: Protein of un 47.4 2.1E+02 0.0045 30.8 10.8 99 374-511 187-300 (311)
251 KOG1899 LAR transmembrane tyro 47.2 6E+02 0.013 30.8 21.3 103 286-391 104-206 (861)
252 KOG4809 Rab6 GTPase-interactin 47.0 5.6E+02 0.012 30.4 20.9 140 307-465 321-471 (654)
253 PF06156 DUF972: Protein of un 46.8 62 0.0013 29.8 6.3 52 406-464 6-57 (107)
254 PF10186 Atg14: UV radiation r 46.4 3.1E+02 0.0067 27.3 17.5 22 581-602 189-210 (302)
255 PF12329 TMF_DNA_bd: TATA elem 46.3 1.9E+02 0.0042 24.9 8.8 45 377-428 2-46 (74)
256 PRK11519 tyrosine kinase; Prov 45.2 5.2E+02 0.011 30.4 14.7 42 245-286 254-295 (719)
257 PF05266 DUF724: Protein of un 45.0 2.9E+02 0.0063 27.7 11.1 56 371-433 129-184 (190)
258 KOG0979 Structural maintenance 44.9 7.5E+02 0.016 31.2 26.3 22 589-610 530-551 (1072)
259 COG4942 Membrane-bound metallo 44.9 5.2E+02 0.011 29.4 24.6 37 146-182 34-70 (420)
260 PF03962 Mnd1: Mnd1 family; I 44.8 2.2E+02 0.0048 28.3 10.2 44 311-354 66-109 (188)
261 PF08580 KAR9: Yeast cortical 44.6 6.2E+02 0.013 30.2 17.5 85 410-499 164-259 (683)
262 PF10805 DUF2730: Protein of u 44.0 87 0.0019 28.4 6.7 54 417-470 37-92 (106)
263 PF07058 Myosin_HC-like: Myosi 42.9 5.1E+02 0.011 28.7 14.9 130 325-468 4-161 (351)
264 PF01486 K-box: K-box region; 42.0 2.3E+02 0.0049 25.0 8.9 72 436-520 19-99 (100)
265 PRK10476 multidrug resistance 41.6 4.3E+02 0.0094 27.6 14.0 17 454-470 187-203 (346)
266 PRK10361 DNA recombination pro 41.5 6E+02 0.013 29.2 22.1 89 370-470 71-160 (475)
267 KOG4572 Predicted DNA-binding 41.5 8.1E+02 0.018 30.7 21.3 116 380-507 995-1110(1424)
268 PF10212 TTKRSYEDQ: Predicted 40.6 4.5E+02 0.0098 30.6 12.9 87 412-501 417-510 (518)
269 smart00787 Spc7 Spc7 kinetocho 40.5 5E+02 0.011 28.0 22.0 45 325-370 114-158 (312)
270 PF10211 Ax_dynein_light: Axon 40.1 3.9E+02 0.0084 26.6 13.0 60 407-466 126-186 (189)
271 PF01456 Mucin: Mucin-like gly 39.9 32 0.00069 31.6 3.4 40 568-608 100-139 (143)
272 KOG0964 Structural maintenance 39.8 9E+02 0.019 30.7 29.4 41 7-47 72-129 (1200)
273 PF06156 DUF972: Protein of un 39.0 1.1E+02 0.0023 28.3 6.5 47 310-370 4-50 (107)
274 COG4026 Uncharacterized protei 38.9 3.6E+02 0.0078 28.8 10.9 44 326-369 105-148 (290)
275 PF12252 SidE: Dot/Icm substra 38.5 9.8E+02 0.021 30.8 27.5 183 173-408 986-1193(1439)
276 TIGR02894 DNA_bind_RsfA transc 38.3 2.9E+02 0.0062 27.7 9.7 79 409-496 78-156 (161)
277 TIGR02231 conserved hypothetic 38.2 3.1E+02 0.0068 30.6 11.2 32 371-402 69-100 (525)
278 TIGR03017 EpsF chain length de 38.0 5.4E+02 0.012 27.6 23.9 40 148-187 162-201 (444)
279 COG1340 Uncharacterized archae 37.8 5.7E+02 0.012 27.8 27.5 211 217-427 27-254 (294)
280 PF02181 FH2: Formin Homology 37.7 3.1E+02 0.0067 28.9 10.6 113 112-231 139-253 (370)
281 COG3883 Uncharacterized protei 37.4 5.5E+02 0.012 27.5 21.9 66 295-360 33-98 (265)
282 TIGR01010 BexC_CtrB_KpsE polys 37.0 5.3E+02 0.011 27.2 16.2 18 451-468 243-260 (362)
283 PRK10869 recombination and rep 36.6 7.1E+02 0.015 28.6 23.2 51 310-360 153-203 (553)
284 PF01920 Prefoldin_2: Prefoldi 36.2 2.1E+02 0.0045 24.5 7.6 13 312-324 17-29 (106)
285 PRK13169 DNA replication intia 36.2 1.2E+02 0.0027 28.2 6.5 47 310-370 4-50 (110)
286 PF15188 CCDC-167: Coiled-coil 36.0 1.2E+02 0.0026 27.3 6.2 60 228-287 2-65 (85)
287 PF07106 TBPIP: Tat binding pr 35.7 1.5E+02 0.0033 28.2 7.2 41 354-394 91-137 (169)
288 COG0598 CorA Mg2+ and Co2+ tra 35.6 3.5E+02 0.0076 28.4 10.5 71 103-185 138-208 (322)
289 PF13747 DUF4164: Domain of un 34.1 3.4E+02 0.0074 24.2 10.4 45 411-455 35-79 (89)
290 PF06818 Fez1: Fez1; InterPro 33.3 5.6E+02 0.012 26.5 13.6 68 325-392 28-106 (202)
291 PF05266 DUF724: Protein of un 33.2 5.2E+02 0.011 26.0 12.6 53 405-471 128-180 (190)
292 KOG0979 Structural maintenance 33.2 1.1E+03 0.024 29.9 22.2 141 347-490 193-351 (1072)
293 PF06005 DUF904: Protein of un 33.2 3.2E+02 0.007 23.7 8.3 23 348-370 10-32 (72)
294 TIGR02231 conserved hypothetic 32.6 5.2E+02 0.011 29.0 11.8 33 323-355 73-105 (525)
295 smart00498 FH2 Formin Homology 32.5 4.3E+02 0.0093 29.0 10.9 101 67-180 246-347 (432)
296 PF09738 DUF2051: Double stran 32.2 5.4E+02 0.012 27.8 11.3 18 491-508 221-238 (302)
297 PF06785 UPF0242: Uncharacteri 32.1 7.8E+02 0.017 27.7 13.4 53 318-370 93-155 (401)
298 PRK11519 tyrosine kinase; Prov 30.7 9.5E+02 0.021 28.3 14.8 13 495-507 443-455 (719)
299 PRK11578 macrolide transporter 30.7 5.2E+02 0.011 27.3 10.9 31 319-349 97-127 (370)
300 PF01496 V_ATPase_I: V-type AT 30.2 3.2E+02 0.0069 32.2 10.0 32 447-478 226-257 (759)
301 KOG0962 DNA repair protein RAD 30.2 1.3E+03 0.029 29.9 38.3 77 110-189 593-677 (1294)
302 PF10157 DUF2365: Uncharacteri 30.0 1E+02 0.0023 30.0 5.2 52 117-179 97-148 (149)
303 TIGR02977 phageshock_pspA phag 29.5 5.9E+02 0.013 25.5 18.9 56 374-436 93-148 (219)
304 PF12777 MT: Microtubule-bindi 29.0 7.4E+02 0.016 26.5 16.9 93 419-518 218-313 (344)
305 PF10212 TTKRSYEDQ: Predicted 28.9 9.6E+02 0.021 28.1 13.1 97 325-462 417-513 (518)
306 PF01544 CorA: CorA-like Mg2+ 28.8 5.7E+02 0.012 25.1 11.5 67 102-180 108-174 (292)
307 PRK15422 septal ring assembly 28.7 4.2E+02 0.0091 23.9 8.2 38 329-366 26-63 (79)
308 PRK13169 DNA replication intia 28.6 2E+02 0.0043 26.9 6.5 52 406-464 6-57 (110)
309 PF08826 DMPK_coil: DMPK coile 28.6 2.9E+02 0.0063 23.5 6.9 53 403-462 3-58 (61)
310 KOG4603 TBP-1 interacting prot 28.5 3.5E+02 0.0077 27.8 8.6 88 111-229 78-165 (201)
311 PTZ00464 SNF-7-like protein; P 28.4 6.6E+02 0.014 25.7 17.3 113 310-428 21-141 (211)
312 PF14131 DUF4298: Domain of un 28.3 2.6E+02 0.0057 24.8 7.0 37 147-183 4-40 (90)
313 TIGR02338 gimC_beta prefoldin, 28.0 4.5E+02 0.0097 23.7 11.4 39 360-398 4-42 (110)
314 PF15254 CCDC14: Coiled-coil d 28.0 1.2E+03 0.027 28.8 18.0 25 280-304 388-412 (861)
315 PF08172 CASP_C: CASP C termin 28.0 6.4E+02 0.014 26.4 10.8 105 311-415 3-135 (248)
316 KOG4451 Uncharacterized conser 27.8 7.8E+02 0.017 26.4 12.0 48 379-426 49-96 (286)
317 KOG4603 TBP-1 interacting prot 27.4 7E+02 0.015 25.7 12.3 45 406-462 98-142 (201)
318 PF04111 APG6: Autophagy prote 27.3 7.9E+02 0.017 26.3 12.3 17 492-508 109-125 (314)
319 PF05335 DUF745: Protein of un 26.9 6.8E+02 0.015 25.4 13.5 104 235-348 72-185 (188)
320 PF14282 FlxA: FlxA-like prote 26.9 3.4E+02 0.0074 24.6 7.7 57 372-428 18-78 (106)
321 PF11932 DUF3450: Protein of u 26.3 7E+02 0.015 25.3 13.6 38 437-474 64-101 (251)
322 PF10498 IFT57: Intra-flagella 25.8 9.2E+02 0.02 26.6 13.2 75 283-368 231-306 (359)
323 KOG4787 Uncharacterized conser 25.5 1.3E+03 0.027 28.0 14.2 133 374-520 401-546 (852)
324 PF10498 IFT57: Intra-flagella 25.4 6.4E+02 0.014 27.8 10.7 91 263-370 225-315 (359)
325 smart00340 HALZ homeobox assoc 25.4 53 0.0011 26.5 1.9 22 350-371 13-34 (44)
326 PF09755 DUF2046: Uncharacteri 25.1 9.4E+02 0.02 26.4 22.8 29 499-527 181-209 (310)
327 PF06785 UPF0242: Uncharacteri 24.9 1E+03 0.022 26.8 17.4 92 410-501 129-253 (401)
328 KOG2148 Exocyst protein Sec3 [ 24.7 6.2E+02 0.013 30.8 10.9 82 325-406 176-265 (867)
329 PF15188 CCDC-167: Coiled-coil 24.7 1.8E+02 0.004 26.2 5.4 58 409-471 6-64 (85)
330 PRK00409 recombination and DNA 24.2 9.8E+02 0.021 28.8 12.7 95 412-508 517-619 (782)
331 PRK10698 phage shock protein P 24.1 7.7E+02 0.017 25.1 16.4 123 222-346 44-184 (222)
332 PF05529 Bap31: B-cell recepto 24.0 4.9E+02 0.011 25.2 8.7 64 373-442 125-188 (192)
333 KOG1853 LIS1-interacting prote 23.8 9.7E+02 0.021 26.1 19.1 205 360-582 31-246 (333)
334 PHA02414 hypothetical protein 23.7 3.4E+02 0.0073 25.6 7.0 77 326-422 2-78 (111)
335 PF12001 DUF3496: Domain of un 23.7 5.3E+02 0.011 24.4 8.3 78 411-508 3-80 (111)
336 PRK04325 hypothetical protein; 23.7 2.4E+02 0.0051 24.4 5.7 50 394-443 2-51 (74)
337 smart00338 BRLZ basic region l 23.7 1.7E+02 0.0037 23.8 4.7 31 435-465 32-62 (65)
338 PF11932 DUF3450: Protein of u 23.6 7.8E+02 0.017 25.0 15.1 7 493-499 157-163 (251)
339 PF05700 BCAS2: Breast carcino 23.6 7.7E+02 0.017 24.9 13.1 75 374-465 144-218 (221)
340 PF07889 DUF1664: Protein of u 23.5 4E+02 0.0086 25.5 7.6 56 120-181 51-106 (126)
341 TIGR01010 BexC_CtrB_KpsE polys 23.5 9E+02 0.019 25.6 14.1 30 257-286 169-198 (362)
342 PF04871 Uso1_p115_C: Uso1 / p 23.5 6.5E+02 0.014 24.0 12.5 23 400-422 83-105 (136)
343 PF07439 DUF1515: Protein of u 23.4 5.4E+02 0.012 24.6 8.3 30 321-350 8-37 (112)
344 KOG4460 Nuclear pore complex, 23.4 1.3E+03 0.029 27.6 16.0 90 250-342 601-690 (741)
345 PF04102 SlyX: SlyX; InterPro 23.1 2.9E+02 0.0062 23.3 6.0 31 437-467 19-49 (69)
346 PF10211 Ax_dynein_light: Axon 23.0 7.6E+02 0.016 24.6 14.7 133 218-370 39-177 (189)
347 PF14257 DUF4349: Domain of un 23.0 1.2E+02 0.0026 30.7 4.4 90 168-260 99-192 (262)
348 PF00435 Spectrin: Spectrin re 22.8 4E+02 0.0087 21.3 9.4 18 372-389 7-24 (105)
349 PF04100 Vps53_N: Vps53-like, 22.8 3.1E+02 0.0067 30.1 7.7 35 149-183 56-90 (383)
350 PRK02793 phi X174 lysis protei 22.4 3E+02 0.0065 23.6 6.1 54 249-302 6-59 (72)
351 PF05531 NPV_P10: Nucleopolyhe 21.8 2.3E+02 0.0051 25.1 5.4 57 106-170 6-62 (75)
352 PF15372 DUF4600: Domain of un 21.6 7.3E+02 0.016 24.1 9.0 84 325-414 19-106 (129)
353 PF13874 Nup54: Nucleoporin co 21.5 4E+02 0.0086 25.1 7.3 101 202-316 31-140 (141)
354 PF07439 DUF1515: Protein of u 21.5 4.1E+02 0.009 25.3 7.2 58 367-427 9-66 (112)
355 PRK07857 hypothetical protein; 21.4 2.1E+02 0.0046 26.7 5.3 66 450-515 28-93 (106)
356 cd07429 Cby_like Chibby, a nuc 21.2 1E+02 0.0022 28.8 3.3 26 495-520 71-96 (108)
357 PF02181 FH2: Formin Homology 21.1 6E+02 0.013 26.8 9.3 106 63-180 240-346 (370)
358 PRK04406 hypothetical protein; 20.9 3.9E+02 0.0084 23.3 6.5 67 243-309 3-69 (75)
359 PRK02119 hypothetical protein; 20.9 3.4E+02 0.0074 23.4 6.1 51 251-301 9-59 (73)
360 TIGR01808 CM_M_hiGC-arch monof 20.8 1.7E+02 0.0036 25.0 4.3 49 451-499 1-49 (74)
361 PRK13729 conjugal transfer pil 20.6 3.1E+02 0.0066 31.6 7.3 25 576-600 240-266 (475)
362 TIGR03752 conj_TIGR03752 integ 20.6 8.4E+02 0.018 28.2 10.6 78 412-510 60-137 (472)
363 TIGR01801 CM_A chorismate muta 20.5 1.3E+02 0.0028 27.3 3.7 50 450-499 4-53 (102)
364 PF01486 K-box: K-box region; 20.4 6E+02 0.013 22.4 9.2 84 404-505 15-98 (100)
365 smart00340 HALZ homeobox assoc 20.2 94 0.002 25.2 2.4 21 437-457 13-33 (44)
366 PF07889 DUF1664: Protein of u 20.2 7.7E+02 0.017 23.6 10.1 33 396-428 84-116 (126)
367 PRK11578 macrolide transporter 20.2 9E+02 0.019 25.5 10.3 32 312-343 97-128 (370)
No 1
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=99.17 E-value=2.1e-08 Score=98.75 Aligned_cols=225 Identities=20% Similarity=0.212 Sum_probs=155.9
Q ss_pred HHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHH
Q 007114 237 KKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKL 316 (617)
Q Consensus 237 kkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL 316 (617)
..+-++......+..+|...+......|..+.++..|+---| ..+.-+-.||+.++..|.....+=.+....+
T Consensus 8 ~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE-------~~le~~eerL~~~~~kL~~~e~~~de~er~~ 80 (237)
T PF00261_consen 8 DELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLE-------EELERAEERLEEATEKLEEAEKRADESERAR 80 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCCHHHHCCCCHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444455555555444443322 2333333344444444444444444444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhH
Q 007114 317 DSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYA 396 (617)
Q Consensus 317 kslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASa 396 (617)
+.+|......+.-+..|..++..|..++..++.++... .-.|..--+.|....+|+..+|.++++.+.++..+....
T Consensus 81 k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~---~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~l 157 (237)
T PF00261_consen 81 KVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEV---ERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNL 157 (237)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 55555555667777777777778888887777776643 333333334445577788888999998888888888888
Q ss_pred HHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHH
Q 007114 397 EASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEE 471 (617)
Q Consensus 397 ea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~ 471 (617)
..........+.....+|.-|..|..++..||.||+.||.+|..|-..+-.|..+|...+.+..++...|.+..+
T Consensus 158 k~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~ 232 (237)
T PF00261_consen 158 KSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLN 232 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777788899999999999999999999999999999999999999999999999999999999987654
No 2
>PRK02224 chromosome segregation protein; Provisional
Probab=98.84 E-value=0.00022 Score=80.84 Aligned_cols=86 Identities=21% Similarity=0.175 Sum_probs=38.8
Q ss_pred hHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHH-------HHHHH
Q 007114 257 EQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVE-------VKESV 329 (617)
Q Consensus 257 eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~-------~len~ 329 (617)
+.....+.+.+..+...+-+++..++-+......+...++.++..|..+...=.++.++|+.+++++. .+++.
T Consensus 355 e~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~ 434 (880)
T PRK02224 355 EERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEAT 434 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444443322211233344444443333 55555
Q ss_pred HHHHHHHHHHHHh
Q 007114 330 IASLRENLSEAQA 342 (617)
Q Consensus 330 ~e~LKe~i~~AEs 342 (617)
+..++..+..++.
T Consensus 435 ~~~~~~~l~~~~~ 447 (880)
T PRK02224 435 LRTARERVEEAEA 447 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 5566666666553
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.81 E-value=0.00014 Score=83.11 Aligned_cols=116 Identities=15% Similarity=0.136 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhc-chHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHH
Q 007114 239 LTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAE-NSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLD 317 (617)
Q Consensus 239 L~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAE-Na~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLk 317 (617)
+...+...+++...+...+.+...+++....+-..+.+.. +..+-+.+....+..+++..+..+.....+=..+..+++
T Consensus 246 l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 325 (1164)
T TIGR02169 246 LASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLA 325 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333443344444444444444433333322 233334444444444444444444333333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhh
Q 007114 318 SLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSL 354 (617)
Q Consensus 318 slEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~L 354 (617)
.+++++..+...++.++..+...+......+.++..+
T Consensus 326 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 362 (1164)
T TIGR02169 326 KLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAEL 362 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444433
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.77 E-value=0.00027 Score=80.21 Aligned_cols=41 Identities=20% Similarity=0.196 Sum_probs=17.6
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHH
Q 007114 450 EEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNL 490 (617)
Q Consensus 450 eEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dL 490 (617)
.++..|+.++..|...+.+....++...+....-..-..||
T Consensus 965 ~~~~~l~~~i~~lg~aiee~~~~~~~a~er~~~l~~q~~dL 1005 (1179)
T TIGR02168 965 DDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFL 1005 (1179)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 34444555555555544444433433333333333333333
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.74 E-value=0.00015 Score=82.77 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=27.7
Q ss_pred ccHHHHHHHHHHH---HHHhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHH
Q 007114 213 QTAEQQRHFLRML---EKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEE 266 (617)
Q Consensus 213 qt~eQqR~iLrML---EkSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~ 266 (617)
..+..+|.+|..+ .....+-.+...+|.....+..+|+..+.........++..
T Consensus 150 ~~~~~r~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~ 206 (1164)
T TIGR02169 150 MSPVERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRE 206 (1164)
T ss_pred CCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788887654 22223333444455555555555555555544444444433
No 6
>PRK02224 chromosome segregation protein; Provisional
Probab=98.74 E-value=0.00092 Score=75.98 Aligned_cols=154 Identities=22% Similarity=0.265 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------hhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHH
Q 007114 311 GLRSKLDSLVKQVEVKESVIASLRENLSEAQARADG------AEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRE 384 (617)
Q Consensus 311 el~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~------aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkE 384 (617)
++..+++.++.++.+++..+++++..+..+++.... ...+...+.+. ++.....+....++...|.+++.+
T Consensus 472 ~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~~~~~l~~l~~~~~~l~~~---~~~~~e~le~~~~~~~~l~~e~~~ 548 (880)
T PRK02224 472 EDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEEL---IAERRETIEEKRERAEELRERAAE 548 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 355666666667777777777776666654444222 11111112221 222222233333333444444443
Q ss_pred hHHHHHH--------------HHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHH
Q 007114 385 SDIQLQH--------------AVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTE 450 (617)
Q Consensus 385 se~QL~~--------------A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLne 450 (617)
....+.. +.........+.+.+.+.+..++. +.++...+...+++.+..+.+...|-+.+-++.+
T Consensus 549 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~-~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 627 (880)
T PRK02224 549 LEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-IRTLLAAIADAEDEIERLREKREALAELNDERRE 627 (880)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322 222334445566666777777773 7777778888888888888888888888889999
Q ss_pred HHHhhHhHHHHHHHHHHH
Q 007114 451 EISFLRDRLECLEASLHQ 468 (617)
Q Consensus 451 EL~fLksr~~~LE~~L~q 468 (617)
+|.-+|.++..|+..+..
T Consensus 628 ~l~~~r~~i~~l~~~~~~ 645 (880)
T PRK02224 628 RLAEKRERKRELEAEFDE 645 (880)
T ss_pred HHHHHHHHHHHHHHHhCH
Confidence 999999999988876653
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.61 E-value=0.00056 Score=77.67 Aligned_cols=14 Identities=21% Similarity=0.128 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 007114 458 RLECLEASLHQAEE 471 (617)
Q Consensus 458 r~~~LE~~L~qa~~ 471 (617)
++..|+.++..+..
T Consensus 966 ~~~~l~~~i~~lg~ 979 (1179)
T TIGR02168 966 DEEEARRRLKRLEN 979 (1179)
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444433
No 8
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.60 E-value=0.0033 Score=75.63 Aligned_cols=403 Identities=14% Similarity=0.168 Sum_probs=187.6
Q ss_pred hhhHHHhHHHHHHHHHHHHhhhhhhhccccccchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhh-------
Q 007114 110 LDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSA------- 182 (617)
Q Consensus 110 lDSEv~Ele~~~~tlq~~I~~~~~~i~s~~~~g~~f~~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~------- 182 (617)
+..++.+++.-+.++..++......+.+|..- .+ -..-..++++-|.+.++.+...+...+.|+-+...
T Consensus 596 ~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~--i~--~~~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~ 671 (1311)
T TIGR00606 596 LNKELASLEQNKNHINNELESKEEQLSSYEDK--LF--DVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQ 671 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hh--cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666666655541 11 01134556667777777777777665555444333
Q ss_pred h--hccCCCCCCCCCCCccccccc----chhhh------------hhhccHHHHHHHHHHHHHHhhhhhhhH-HHhHHHH
Q 007114 183 L--DREGNWISDKDTGSLEDDQFL----NENAK------------IKLQTAEQQRHFLRMLEKSLAREMDLE-KKLTESR 243 (617)
Q Consensus 183 ~--~~~~~~~~~~~~~~~ed~~~~----~~~~~------------~~mqt~eQqR~iLrMLEkSlA~e~dLE-kkL~es~ 243 (617)
. +.+..|+--.- ++..++... ++... ......+...+.|+.|...++.-.++. +.+.+.+
T Consensus 672 a~~~~~~~C~LC~R-~f~~eee~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~ 750 (1311)
T TIGR00606 672 LTDENQSCCPVCQR-VFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELR 750 (1311)
T ss_pred HhhccCCcCCCCCC-CCCChhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHH
Confidence 2 22223332222 222222211 11111 112223344566666665556555553 5555555
Q ss_pred HHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcch------HHHHhhhHHHHHHhHHHHhhhcccchh--chhhHHHH
Q 007114 244 QVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENS------AEVLKGISKELLGRLQIVLFNMNGSVQ--REAGLRSK 315 (617)
Q Consensus 244 ~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa------~EvL~g~skel~gkLq~~qf~L~as~~--REsel~sK 315 (617)
....++...+.....+...++......-...=.++.+ +.-+......+..++......+.+++. .=.+|...
T Consensus 751 ~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~e 830 (1311)
T TIGR00606 751 NKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQE 830 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHH
Confidence 5555555554444443333333322222222222222 222356667777777777777766554 12456666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------------------------hHhhhhhHHhhHHHhhhhhhhhhh
Q 007114 316 LDSLVKQVEVKESVIASLRENLSEAQARADGA------------------------EVRCKSLAETNIELNEDLKGSRAT 371 (617)
Q Consensus 316 LkslEeqL~~len~~e~LKe~i~~AEsra~~a------------------------eskc~~LteTN~eL~~el~~Lk~l 371 (617)
+..++.+++.+.+.++++.......+...... +.++..|.+-+.++..++..++.
T Consensus 831 i~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~- 909 (1311)
T TIGR00606 831 KQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKE- 909 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 66666666644333333333333333333333 33333333333333333333222
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHhH----HHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhh-hhhhhHHHHHhhHHHhhh
Q 007114 372 SEKVESLERQLRESDIQLQHAVAYA----EASLEKQNMLYSTVKDMENLIQDLKLKVSKAD-SRADSAEEKLIILSEANA 446 (617)
Q Consensus 372 sEKv~sLEkQLkEse~QL~~A~ASa----ea~~eeqn~l~S~IsdMEnvIEeLK~KvskAE-SRAe~AE~kc~~LtEtN~ 446 (617)
++..|...+.....++...+... ...+.+.+.+...+..+..+..+++.-+..-- ...+..+.++..+..+=-
T Consensus 910 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~~~~~~ie 987 (1311)
T TIGR00606 910 --QDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLE 987 (1311)
T ss_pred --HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222222222222 22223334444444444444444443322211 113334445554544456
Q ss_pred hhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhh---------hHHHHHHHHH--------HHHHHHHHHHhhhhhh
Q 007114 447 GLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIR---------TKVITNLVMQ--------MAVERERLRQQISSLA 509 (617)
Q Consensus 447 eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~---------tK~i~dLv~Q--------La~ErErL~~Qissl~ 509 (617)
++..++..+..++..+.+.+......|......|..+ ..-|..|..+ +..|+.+|..++..+.
T Consensus 988 ~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~ 1067 (1311)
T TIGR00606 988 ECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIK 1067 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 6666777777777777777776666666665555555 2334444433 3356677777777777
Q ss_pred hhhHHHHHHhh
Q 007114 510 MENKVMVVKLQ 520 (617)
Q Consensus 510 ~eNk~L~~k~k 520 (617)
..+..+...++
T Consensus 1068 ~~~a~l~g~~k 1078 (1311)
T TIGR00606 1068 RNHVLALGRQK 1078 (1311)
T ss_pred HHHHHHHHHHH
Confidence 66666555444
No 9
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.53 E-value=0.00062 Score=84.36 Aligned_cols=248 Identities=22% Similarity=0.260 Sum_probs=185.7
Q ss_pred HhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007114 261 LYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEA 340 (617)
Q Consensus 261 ~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~A 340 (617)
++||.-...+-..+-.|.-+..=+.-..+-++.-+..+|.++..+.....++++.+..+|..+..+++.+++|+.++..+
T Consensus 1607 Kkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~ 1686 (1930)
T KOG0161|consen 1607 KKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEAL 1686 (1930)
T ss_pred hhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555556667777778888888888899999999999999999999999999999999
Q ss_pred HhhhhhhhHhhhhhHHhhHHHhhhhhhhhh----hhHHHHHHHHHHHHhHHHHHHH-------HHhHHHHHHHHH-----
Q 007114 341 QARADGAEVRCKSLAETNIELNEDLKGSRA----TSEKVESLERQLRESDIQLQHA-------VAYAEASLEKQN----- 404 (617)
Q Consensus 341 Esra~~aeskc~~LteTN~eL~~el~~Lk~----lsEKv~sLEkQLkEse~QL~~A-------~ASaea~~eeqn----- 404 (617)
+.---++|.++..+++-+..+......+-+ +-.++..|+..|.+....+..+ .+.+.-+.++++
T Consensus 1687 ~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~ 1766 (1930)
T KOG0161|consen 1687 ERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQET 1766 (1930)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 888889999988888877777766555544 5556666666665554443332 222333333333
Q ss_pred --hHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhh
Q 007114 405 --MLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGI 482 (617)
Q Consensus 405 --~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~ 482 (617)
.+++.-..||.-+.||+.++..||+.|-.- -..-++-|+.|+.+||.+|......+..+.|-..-
T Consensus 1767 ~~~le~~k~~LE~~~kdLq~rL~e~E~~a~~~-------------~k~~i~~Learir~LE~~l~~E~~~~~e~~k~~rk 1833 (1930)
T KOG0161|consen 1767 SQKLERLKKSLERQVKDLQLRLDEAEQAALKG-------------GKKQIAKLEARIRELESELEGEQRRKAEAIKGLRK 1833 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-------------cHHHHHHHHHHHHHHHHHHhHhhhhhHHHhHHHHH
Confidence 345556778888899999888888644321 12347889999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHH---HHHHHhhhhhhhhhHHHHHHhhh
Q 007114 483 RTKVITNLVMQMAVER---ERLRQQISSLAMENKVMVVKLQQ 521 (617)
Q Consensus 483 ~tK~i~dLv~QLa~Er---ErL~~Qissl~~eNk~L~~k~k~ 521 (617)
.-+.|++|-+|...++ +|++.++.-+..+++.+-..+-.
T Consensus 1834 ~er~vkEl~~q~eed~k~~~~~q~~~dkl~~k~~~~krQlee 1875 (1930)
T KOG0161|consen 1834 KERRVKELQFQVEEDKKNIERLQDLVDKLQAKIKQYKRQLEE 1875 (1930)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999987 68899999999988887666553
No 10
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.48 E-value=0.0026 Score=75.69 Aligned_cols=47 Identities=26% Similarity=0.300 Sum_probs=22.5
Q ss_pred hhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHh
Q 007114 427 ADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETK 473 (617)
Q Consensus 427 AESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K 473 (617)
.+.+....+.++..|-..|+.--+|..-++.|...|..++..+..+|
T Consensus 947 ~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~ 993 (1163)
T COG1196 947 LEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAK 993 (1163)
T ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555554444444444444444444444444333
No 11
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.44 E-value=0.0022 Score=76.29 Aligned_cols=198 Identities=21% Similarity=0.271 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh----hhHHHHHHHHHHHHhHHHH
Q 007114 314 SKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA----TSEKVESLERQLRESDIQL 389 (617)
Q Consensus 314 sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~----lsEKv~sLEkQLkEse~QL 389 (617)
.++..++.++...+..+..+...+..-+.+.+....+...+.+-..++..+++.|+. +..++..+..++.+.....
T Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 872 (1163)
T COG1196 793 EELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEK 872 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444555555555555555555555555555555555555554 4556666666666666666
Q ss_pred HHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHH---------hhHhHHH
Q 007114 390 QHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEIS---------FLRDRLE 460 (617)
Q Consensus 390 ~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~---------fLksr~~ 460 (617)
......-...+.+.+.+...|..+++-+..++..+.+++.|+...+.+|..+......+..++. .++.++.
T Consensus 873 ~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 952 (1163)
T COG1196 873 EELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIE 952 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHH
Confidence 6666666677777777888888888888888888888888888888888776655444444443 3555666
Q ss_pred HHHHHHHHHHHHhhhhhHhhhhh---hHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 007114 461 CLEASLHQAEETKLATAKDIGIR---TKVITNLVMQMAVERERLRQQISSLAME 511 (617)
Q Consensus 461 ~LE~~L~qa~~~K~stakdI~~~---tK~i~dLv~QLa~ErErL~~Qissl~~e 511 (617)
.|+..+..+-..-.....+..-. -..+..-...|...+.+|+..|..+-++
T Consensus 953 ~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~ 1006 (1163)
T COG1196 953 RLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKE 1006 (1163)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766443322223333333333 3333334444556677777777666443
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.27 E-value=0.021 Score=68.92 Aligned_cols=62 Identities=15% Similarity=0.242 Sum_probs=32.3
Q ss_pred HHHHHHHHhhhhhhhccccccchhhHH---H-HHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 007114 121 ITTLEADFVKAHELISSYTELGKASIE---M-EEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSA 182 (617)
Q Consensus 121 ~~tlq~~I~~~~~~i~s~~~~g~~f~~---~-~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~ 182 (617)
+..+...+.+.....-....+...+.. . ...+-..+..+.+..+.+.+++.+...+...+..
T Consensus 711 ~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~ 776 (1311)
T TIGR00606 711 LKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGT 776 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444322222 2 2445566666666666666666666666666643
No 13
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.24 E-value=0.003 Score=67.99 Aligned_cols=101 Identities=16% Similarity=0.196 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHH
Q 007114 371 TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTE 450 (617)
Q Consensus 371 lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLne 450 (617)
+.+....|+.|++..+..+.... ....+.+.+...+..+++.|...+..+.....+....+.+...|...+.++++
T Consensus 304 l~d~i~~l~~~l~~l~~~i~~~~----~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~ 379 (562)
T PHA02562 304 IKDKLKELQHSLEKLDTAIDELE----EIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAE 379 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHH
Confidence 34444444444444444333222 34445666788899999999999999988888888999999999999999999
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHhhh
Q 007114 451 EISFLRDRLECLEASLHQAEETKLA 475 (617)
Q Consensus 451 EL~fLksr~~~LE~~L~qa~~~K~s 475 (617)
+|..+..++..+....++....+..
T Consensus 380 ~l~~l~~~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 380 ELAKLQDELDKIVKTKSELVKEKYH 404 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888887777766655543
No 14
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.22 E-value=0.00078 Score=66.88 Aligned_cols=212 Identities=24% Similarity=0.270 Sum_probs=122.2
Q ss_pred hHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhh----hhh
Q 007114 294 RLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLK----GSR 369 (617)
Q Consensus 294 kLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~----~Lk 369 (617)
|++.++.++-.+..|...+..+|+..++.+...+..+.+|...|...|.....++.++...+..=-+.....+ .++
T Consensus 2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k 81 (237)
T PF00261_consen 2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARK 81 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888899999988888888777777777777776555555555555444333333333333 333
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhH
Q 007114 370 ATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLT 449 (617)
Q Consensus 370 ~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLn 449 (617)
.+..+....+..+...+.|+..|...++.....+......+.-+|. .+.+||.|++.+|.+|..|-+
T Consensus 82 ~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~-------~Le~aEeR~e~~E~ki~eLE~------ 148 (237)
T PF00261_consen 82 VLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQ-------ELERAEERAEAAESKIKELEE------ 148 (237)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhchhHHHHHH------
Confidence 3555666666666666777777777666666555555555544444 445556666666666655443
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHhhhh----------hHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHh
Q 007114 450 EEISFLRDRLECLEASLHQAEETKLAT----------AKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKL 519 (617)
Q Consensus 450 eEL~fLksr~~~LE~~L~qa~~~K~st----------akdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L~~k~ 519 (617)
+|..+...+.+||.+-.++.+.-... .++.-.|......-|.+|-.+..+|...|...-.++.-+-..+
T Consensus 149 -el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 149 -ELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333222222111 2222344455555566666666666666666655555444333
No 15
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.20 E-value=0.035 Score=69.71 Aligned_cols=279 Identities=21% Similarity=0.211 Sum_probs=153.7
Q ss_pred HhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchh
Q 007114 228 SLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQ 307 (617)
Q Consensus 228 SlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~ 307 (617)
+.+.--.||+++.-....-.+.+.+..-..++....+..+.......+--.|+.+.+......+...-..++..+.-+..
T Consensus 1426 ~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~ 1505 (1930)
T KOG0161|consen 1426 SRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEE 1505 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444456666666666666666666666666666666666666666666777777766666666666666666666666
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh-----------------
Q 007114 308 REAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA----------------- 370 (617)
Q Consensus 308 REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~----------------- 370 (617)
+..++--.+.++|+-++.++..+.+|..++.+||...+..+++...+.-.+-++..++..--.
T Consensus 1506 ~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i 1585 (1930)
T KOG0161|consen 1506 QKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQL 1585 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 677777777777777778888888888888887777777777665544444444433222111
Q ss_pred -------------hhHHHH---HHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHH-------HHHHhhhhh
Q 007114 371 -------------TSEKVE---SLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQ-------DLKLKVSKA 427 (617)
Q Consensus 371 -------------lsEKv~---sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIE-------eLK~KvskA 427 (617)
-++-+. -+|.++.+.++++.+|.......+.++..+...++++-.-.+ ++++.+..|
T Consensus 1586 ~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~a 1665 (1930)
T KOG0161|consen 1586 ESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEA 1665 (1930)
T ss_pred HHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 477888888888888877666555554444444444433333 333444444
Q ss_pred hhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhh---HHHHHHHHHHHHHHHHHHHh
Q 007114 428 DSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRT---KVITNLVMQMAVERERLRQQ 504 (617)
Q Consensus 428 ESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~t---K~i~dLv~QLa~ErErL~~Q 504 (617)
|-|+..+++ |+..|+..+.++++-=++++.+-...+..|.... -.....-.+|-.+.-.|+..
T Consensus 1666 err~~~l~~--------------E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~e 1731 (1930)
T KOG0161|consen 1666 ERRLAALQA--------------ELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSE 1731 (1930)
T ss_pred HHHHHHHHH--------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Confidence 444444444 4444444444444444444443333333333321 22222233333344444444
Q ss_pred hhhhhhhhHHHHHHhh
Q 007114 505 ISSLAMENKVMVVKLQ 520 (617)
Q Consensus 505 issl~~eNk~L~~k~k 520 (617)
+-..+.++....++.+
T Consensus 1732 lee~~~~~~~~~Er~k 1747 (1930)
T KOG0161|consen 1732 LEEEQSELRAAEERAK 1747 (1930)
T ss_pred HHHHHHHHHhhHHHHH
Confidence 4444444444444444
No 16
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.00 E-value=0.029 Score=63.05 Aligned_cols=38 Identities=21% Similarity=0.269 Sum_probs=19.2
Q ss_pred hhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHH
Q 007114 234 DLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDAC 271 (617)
Q Consensus 234 dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~ 271 (617)
-|++.....+...+.|+..|.+..++...|.....++.
T Consensus 161 ~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~ 198 (546)
T PF07888_consen 161 QLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELT 198 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555554444443
No 17
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.89 E-value=0.053 Score=63.15 Aligned_cols=165 Identities=22% Similarity=0.256 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHH
Q 007114 318 SLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAE 397 (617)
Q Consensus 318 slEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASae 397 (617)
.+|+-+.+.+.+++.|.+.-.+++.... .+...+ =+.++.+..++.+|+..|-+-.++|..++.-+.
T Consensus 437 ~lEea~~eker~~e~l~e~r~~~e~e~~---Eele~~----------~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s 503 (775)
T PF10174_consen 437 TLEEALREKERLQERLEEQRERAEKERQ---EELETY----------QKELKELKAKLESLQKELSEKELQLEDAKEEAS 503 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH----------HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHH
Confidence 4555666666666666655444331110 011111 122333566777888888888888777665555
Q ss_pred HHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHH------HHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHH
Q 007114 398 ASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAE------EKLIILSEANAGLTEEISFLRDRLECLEASLHQAEE 471 (617)
Q Consensus 398 a~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE------~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~ 471 (617)
..---+.--.|.|..++.-++-.++++.+.++..+.+. .++..|-..+....++.+..+..|+.|=.-|+.++.
T Consensus 504 ~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~ 583 (775)
T PF10174_consen 504 KLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAEN 583 (775)
T ss_pred HHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445688899999999999999999998887722 123334444444445555555678888889999999
Q ss_pred HhhhhhHhhhhhhHHHHHHHHHHH
Q 007114 472 TKLATAKDIGIRTKVITNLVMQMA 495 (617)
Q Consensus 472 ~K~stakdI~~~tK~i~dLv~QLa 495 (617)
+|.+.-+.||--.+-+++.-++++
T Consensus 584 EK~~ke~ki~~LekeLek~~~~~~ 607 (775)
T PF10174_consen 584 EKNDKEKKIGELEKELEKAQMHLA 607 (775)
T ss_pred HHHhHHHHHHHHHHHHHHhccchh
Confidence 999998888877776555444443
No 18
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.85 E-value=0.17 Score=63.45 Aligned_cols=334 Identities=20% Similarity=0.257 Sum_probs=193.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccCCCCCCCCCCCcccccccchhhhhhhccHHHHHHHHHHHH
Q 007114 147 EMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLE 226 (617)
Q Consensus 147 ~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~~~~~~~~~~~~~~~~ed~~~~~~~~~~~mqt~eQqR~iLrMLE 226 (617)
.++.++.++...-+-++-.++++|.+......--+-+ .|--+ ..++.-+.-.+.+-.+.+|+|.....|+
T Consensus 63 ~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l----~~~~~------~~~~~~~~l~~~~se~~~qkr~l~~~le 132 (1822)
T KOG4674|consen 63 RLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNL----SWEID------ALKLENSQLRRAKSELQEQKRQLMELLE 132 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH----HHHHH------HhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555566666666555333322221 11100 1111112234455556677887777766
Q ss_pred H---------------------HhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHH-------HHHHHHHHHHHhh-
Q 007114 227 K---------------------SLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTE-------EEAMDACERLFEA- 277 (617)
Q Consensus 227 k---------------------SlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lE-------E~~~~~~er~~EA- 277 (617)
. +..--+++|.++.+.....--++.|+...+||+.-|+ .....++++++.-
T Consensus 133 ~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~ 212 (1822)
T KOG4674|consen 133 RQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLR 212 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4 3344567777777766666666677777777665544 4444555555532
Q ss_pred ---cchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHH--------------------------------HHHHH
Q 007114 278 ---ENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLD--------------------------------SLVKQ 322 (617)
Q Consensus 278 ---ENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLk--------------------------------slEeq 322 (617)
.+-.+=|...+..+..-+...+...++..++=.+|-.++. -.+.+
T Consensus 213 re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ks~ 292 (1822)
T KOG4674|consen 213 REHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLNELWKSK 292 (1822)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444555555555555555555555555555555444 12222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh-hhHHHHHHHHHHHHhHHHHHHHH--------
Q 007114 323 VEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA-TSEKVESLERQLRESDIQLQHAV-------- 393 (617)
Q Consensus 323 L~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~-lsEKv~sLEkQLkEse~QL~~A~-------- 393 (617)
+.++..-..+|-+.|...+..+..+..+|...++-=.++..-+..+.+ +..|+..||..|+...--+.++.
T Consensus 293 ~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~~~~~~s~~ 372 (1822)
T KOG4674|consen 293 LEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSATGESSMVSEK 372 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcccchhhhH
Confidence 226666677777888888888888888888887665555555444444 55678888888877665544411
Q ss_pred ---Hh---------------HHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhh
Q 007114 394 ---AY---------------AEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFL 455 (617)
Q Consensus 394 ---AS---------------aea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fL 455 (617)
++ -...+.++.+++-++.++.+.+...++.|.--..-...+-....-.++++.++++||.+.
T Consensus 373 ~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~ 452 (1822)
T KOG4674|consen 373 AALASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFS 452 (1822)
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 011234455666666666666666665555555555556667777888899999999999
Q ss_pred HhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHH
Q 007114 456 RDRLECLEASLHQAEETKLATAKDIGIRTKVITNL 490 (617)
Q Consensus 456 ksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dL 490 (617)
..+..++|+-++.+.----.-..++-.....|.||
T Consensus 453 ~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdl 487 (1822)
T KOG4674|consen 453 NQKIQKLEKELESLKKQLNDLERENKLLEQQISDL 487 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888766544333333333333333333
No 19
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.85 E-value=0.097 Score=64.71 Aligned_cols=247 Identities=18% Similarity=0.136 Sum_probs=125.0
Q ss_pred hhhhhccHHHHHHHHHHHHHHhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHH------hhcchH
Q 007114 208 AKIKLQTAEQQRHFLRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLF------EAENSA 281 (617)
Q Consensus 208 ~~~~mqt~eQqR~iLrMLEkSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~------EAENa~ 281 (617)
+--=|.+++++|.++-=.=+-=.+.-.-+++|.....+-.++...+...+.....|+..+...-...- ......
T Consensus 271 aad~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei 350 (1486)
T PRK04863 271 AADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKI 350 (1486)
T ss_pred HHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33338899988887644322223444455555566666666666666666666666665555433222 223344
Q ss_pred HHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHH
Q 007114 282 EVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIEL 361 (617)
Q Consensus 282 EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL 361 (617)
..+.+..+++..+++..+..+.....+=.++..++..+++++..+...+.++...+..++.++.........|..++.-+
T Consensus 351 ~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~ 430 (1486)
T PRK04863 351 ERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLC 430 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566666777777777666655544445555555555555555555555555555555555555555555554444332
Q ss_pred h------hhhhhhh-hhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhH
Q 007114 362 N------EDLKGSR-ATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSA 434 (617)
Q Consensus 362 ~------~el~~Lk-~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~A 434 (617)
. +++.... ....++..++.++.+.+.++..+.+..+....+++.+++. +.+|..... .+.|
T Consensus 431 ~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~-----------~Gkv~~~~a-~~~~ 498 (1486)
T PRK04863 431 GLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKI-----------AGEVSRSEA-WDVA 498 (1486)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------cCCcCHHHH-HHHH
Confidence 1 1111111 1444555555555555555555555554444443333332 233332211 2223
Q ss_pred HHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHH
Q 007114 435 EEKLIILSEANAGLTEEISFLRDRLECLEASLH 467 (617)
Q Consensus 435 E~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~ 467 (617)
-..|..+.+-. -+-+-+..++.++..||..|+
T Consensus 499 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~ 530 (1486)
T PRK04863 499 RELLRRLREQR-HLAEQLQQLRMRLSELEQRLR 530 (1486)
T ss_pred HHHHHHhHHHH-HHHHhhHHHHHHHHHHHHHHH
Confidence 33333333322 234455566666666666554
No 20
>PRK01156 chromosome segregation protein; Provisional
Probab=97.85 E-value=0.11 Score=59.99 Aligned_cols=33 Identities=15% Similarity=0.271 Sum_probs=16.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 007114 151 KLLDSEDSLQQSRDQILEIKKQSAKFQRTLSAL 183 (617)
Q Consensus 151 KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~ 183 (617)
++.+...-+.+.+..+.+++.+...+...+..+
T Consensus 410 ~~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el 442 (895)
T PRK01156 410 ELNEINVKLQDISSKVSSLNQRIRALRENLDEL 442 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555544443
No 21
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.79 E-value=0.055 Score=54.70 Aligned_cols=109 Identities=22% Similarity=0.306 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHH
Q 007114 329 VIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYS 408 (617)
Q Consensus 329 ~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S 408 (617)
-+.+++.......+.+..+..++..+...=-.|..+++. +..+...||+++.+.+.+....... +..
T Consensus 196 k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~---l~~~~~~Le~~l~~le~~~~~~~~~----------~~~ 262 (312)
T PF00038_consen 196 KLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELES---LRAKNASLERQLRELEQRLDEEREE----------YQA 262 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----------HHH
T ss_pred ccccccccccccccccchhHhHHHHHHhhhhHhhhhhhc---cccchhhhhhhHHHHHHHHHHHHHH----------HHH
Confidence 344444444444444444444444443333333333333 3446678888888877766543332 334
Q ss_pred hHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHh
Q 007114 409 TVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRD 457 (617)
Q Consensus 409 ~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLks 457 (617)
.|..+|.-|.+++..+..-- .++..|-..++.|.-||+.||.
T Consensus 263 ~i~~le~el~~l~~~~~~~~-------~ey~~Ll~~K~~Ld~EIatYR~ 304 (312)
T PF00038_consen 263 EIAELEEELAELREEMARQL-------REYQELLDVKLALDAEIATYRK 304 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccchhHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHH
Confidence 47777777777777666554 5899999999999999999996
No 22
>PRK03918 chromosome segregation protein; Provisional
Probab=97.79 E-value=0.13 Score=58.79 Aligned_cols=13 Identities=31% Similarity=0.682 Sum_probs=7.2
Q ss_pred hhhHHHhHHHHHH
Q 007114 110 LDSELRELENFIT 122 (617)
Q Consensus 110 lDSEv~Ele~~~~ 122 (617)
++..+..++..+.
T Consensus 174 ~~~~~~~l~~~l~ 186 (880)
T PRK03918 174 IKRRIERLEKFIK 186 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555553
No 23
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.78 E-value=0.049 Score=60.29 Aligned_cols=129 Identities=22% Similarity=0.192 Sum_probs=75.3
Q ss_pred hhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhH
Q 007114 233 MDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGL 312 (617)
Q Consensus 233 ~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel 312 (617)
.+.-+.|..++.+.++|+.+|.....+...-.+.++..--|+=+.+. |......+. .+..|.....|=...
T Consensus 58 ~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~------~~~~~~~~~---~k~ele~~~~q~~~~ 128 (522)
T PF05701_consen 58 AQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQ------GIAEEASVA---WKAELESAREQYASA 128 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhh------hhcccchHH---HHHHHHHHHHHHHHH
Confidence 45556777889999999999988887777766666665555544432 222222222 233333333444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh
Q 007114 313 RSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA 370 (617)
Q Consensus 313 ~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~ 370 (617)
...|.+.-++|..+...+..+.+.-..|.++|..|....+.-.+.=-+|+.+|..|++
T Consensus 129 ~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke 186 (522)
T PF05701_consen 129 VAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKE 186 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666665555666666665555555444444445555555544
No 24
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.75 E-value=0.17 Score=59.20 Aligned_cols=256 Identities=16% Similarity=0.192 Sum_probs=143.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccCCCCCCCCCCCcccccccchhhhh-hhccHHHHHHHHHHH
Q 007114 147 EMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKI-KLQTAEQQRHFLRML 225 (617)
Q Consensus 147 ~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~~~~~~~~~~~~~~~~ed~~~~~~~~~~-~mqt~eQqR~iLrML 225 (617)
.+-..+.+++.-+..++..+..--++...|...++.- .. ..+.++.+ .+ ..++.|=
T Consensus 180 ~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~---~~--------------~~~~~a~t~al------q~~ie~K 236 (775)
T PF10174_consen 180 EALRRIREAEARIMRLESLLERKEKEHMEAREQLHRR---LQ--------------MERDDAETEAL------QTVIEEK 236 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH---hh--------------cCCCchhHHHH------HHHHHHH
Confidence 4555677777777777777666666665564444210 01 11112222 22 2456666
Q ss_pred HHHhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccc
Q 007114 226 EKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGS 305 (617)
Q Consensus 226 EkSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as 305 (617)
+-.|+ .||+.|.++..-..-|+-++.-.+.+..++....+..-.-..-.-|-.+-+.+.+..--.=|...+..|...
T Consensus 237 d~ki~---~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~ 313 (775)
T PF10174_consen 237 DTKIA---SLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETL 313 (775)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665 477777777777777777777777777776333332221111122224444444444333344555555555
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhh-------hhhhhh--------
Q 007114 306 VQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNED-------LKGSRA-------- 370 (617)
Q Consensus 306 ~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~e-------l~~Lk~-------- 370 (617)
..--+|.+.-+.-+.++|...+.-++-|--++..-..|...+.+-|.+.+..+-.++.+ |..|++
T Consensus 314 ~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~k 393 (775)
T PF10174_consen 314 EEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERK 393 (775)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666665555444444444444455555555555555555544444 444554
Q ss_pred ---hhHHHHHHHHHHHHhHHHHHHHHHhHHH------HHHHHHhHHHhHhhhHHHHHHHHHhhhhhh
Q 007114 371 ---TSEKVESLERQLRESDIQLQHAVAYAEA------SLEKQNMLYSTVKDMENLIQDLKLKVSKAD 428 (617)
Q Consensus 371 ---lsEKv~sLEkQLkEse~QL~~A~ASaea------~~eeqn~l~S~IsdMEnvIEeLK~KvskAE 428 (617)
+..|+..||.+|++-+.|+...+...-+ ...-+..+...+.+-+.+|+.|...-..++
T Consensus 394 i~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e 460 (775)
T PF10174_consen 394 INVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAE 460 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778889999999999888777665441 112234455666677777776665443333
No 25
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.71 E-value=0.025 Score=63.47 Aligned_cols=136 Identities=18% Similarity=0.231 Sum_probs=70.6
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHh
Q 007114 378 LERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRD 457 (617)
Q Consensus 378 LEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLks 457 (617)
++.++.....||..+.....+++.+-..+..++++|-++=+-.-..+..| |.+.|.-+ ..|.++.++|.+.= +
T Consensus 281 ~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~a--RLe~aql~-~qLad~~l~lke~~----~ 353 (546)
T PF07888_consen 281 LQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQA--RLEAAQLK-LQLADASLELKEGR----S 353 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhHHHHH-HHHHHHHHHHHHHH----H
Confidence 33333444444444444444544444555566666655544433333333 45555554 46667666654332 2
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhH-HHHHHhh
Q 007114 458 RLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENK-VMVVKLQ 520 (617)
Q Consensus 458 r~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk-~L~~k~k 520 (617)
+...--..|.+.-+..-.-+.++....--+.+-...=-.||++|+.||....+-|. .|.+..+
T Consensus 354 q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~r 417 (546)
T PF07888_consen 354 QWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRR 417 (546)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 11111112222112222234455555555666666667799999999988877775 3444444
No 26
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.71 E-value=0.046 Score=64.39 Aligned_cols=195 Identities=24% Similarity=0.286 Sum_probs=110.8
Q ss_pred hhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchh--
Q 007114 233 MDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREA-- 310 (617)
Q Consensus 233 ~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REs-- 310 (617)
-||..||.-.|..-.|=+.||-..+-.++.+|-.-+ .--|+.+ -|.+|.--.+|+.
T Consensus 234 rdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqE-fkSkim~---------------------qqa~Lqrel~raR~e 291 (1243)
T KOG0971|consen 234 RDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQE-FKSKIME---------------------QQADLQRELKRARKE 291 (1243)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHH---------------------HHHHHHHHHHHHHHH
Confidence 478888888888888888888888887777765432 2222222 2222211111111
Q ss_pred -----hHHHHHH------------------HHHHHHHHHHHHHHHHHHHHH--------------HHHhhh-hhhhHhhh
Q 007114 311 -----GLRSKLD------------------SLVKQVEVKESVIASLRENLS--------------EAQARA-DGAEVRCK 352 (617)
Q Consensus 311 -----el~sKLk------------------slEeqL~~len~~e~LKe~i~--------------~AEsra-~~aeskc~ 352 (617)
+.+++++ -+||.-++|++.++.+|+.+. +--+-+ ..+--+.+
T Consensus 292 ~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfk 371 (1243)
T KOG0971|consen 292 AKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFK 371 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHH
Confidence 1111111 233333344444444444443 222333 22344677
Q ss_pred hhHHhhHHHhhhhhhhhhhh--HH------HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhh
Q 007114 353 SLAETNIELNEDLKGSRATS--EK------VESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKV 424 (617)
Q Consensus 353 ~LteTN~eL~~el~~Lk~ls--EK------v~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~Kv 424 (617)
+|+.-|..|++-|--|++++ +| ++.||+.--|... -.. .-+-|.-++..||..|.|||+.|
T Consensus 372 qlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~e----L~r-------~kE~Lsr~~d~aEs~iadlkEQV 440 (1243)
T KOG0971|consen 372 QLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEE----LRR-------QKERLSRELDQAESTIADLKEQV 440 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHH----HHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888887777777732 11 1122222111111 111 11224445777778888888877
Q ss_pred hhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHH
Q 007114 425 SKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEA 464 (617)
Q Consensus 425 skAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~ 464 (617)
.-|= -||+=+++||+-|++|-+-+..|+.-+++||.
T Consensus 441 DAAl----GAE~MV~qLtdknlnlEekVklLeetv~dlEa 476 (1243)
T KOG0971|consen 441 DAAL----GAEEMVEQLTDKNLNLEEKVKLLEETVGDLEA 476 (1243)
T ss_pred HHhh----cHHHHHHHHHhhccCHHHHHHHHHHHHHHHHH
Confidence 6653 58999999999999999999999997777764
No 27
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.71 E-value=0.046 Score=65.64 Aligned_cols=204 Identities=22% Similarity=0.230 Sum_probs=126.3
Q ss_pred hHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhh-------hhhHHh----hHHHh
Q 007114 294 RLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRC-------KSLAET----NIELN 362 (617)
Q Consensus 294 kLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc-------~~LteT----N~eL~ 362 (617)
+.....--++-...+...++++|+.+-.+++.++..++..+..+++++.-.+.+.... .+|.+- |-+|.
T Consensus 385 ~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~ 464 (1293)
T KOG0996|consen 385 KFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD 464 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555667777777877777777777777777777776666555554443 333332 33333
Q ss_pred hhhhhhhh----hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHH
Q 007114 363 EDLKGSRA----TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKL 438 (617)
Q Consensus 363 ~el~~Lk~----lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc 438 (617)
+.++.|+. .+++...+|+.|.-...|+..|.+..+-.+.++.++.+...+.-.=+++||.++..
T Consensus 465 e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~------------ 532 (1293)
T KOG0996|consen 465 EILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLA------------ 532 (1293)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 44444444 67777788888888888888777776666655555544444444444444444333
Q ss_pred hhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHH---HHhhhhhhhhhHHH
Q 007114 439 IILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERL---RQQISSLAMENKVM 515 (617)
Q Consensus 439 ~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL---~~Qissl~~eNk~L 515 (617)
..+++.+.+-+|..++..+.+ ...+.....|++...++....|.+|+..=|+|+ .++.++-...|++|
T Consensus 533 --~~~~~~e~~~~l~~~k~~l~~-------~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl 603 (1293)
T KOG0996|consen 533 --SSESLKEKKTELDDLKEELPS-------LKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVL 603 (1293)
T ss_pred --HHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 344455555555444444444 444444556777778888888888888777665 67788999999999
Q ss_pred HHH
Q 007114 516 VVK 518 (617)
Q Consensus 516 ~~k 518 (617)
..=
T Consensus 604 ~al 606 (1293)
T KOG0996|consen 604 DAL 606 (1293)
T ss_pred HHH
Confidence 543
No 28
>PRK03918 chromosome segregation protein; Provisional
Probab=97.68 E-value=0.18 Score=57.52 Aligned_cols=30 Identities=20% Similarity=0.399 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 007114 155 SEDSLQQSRDQILEIKKQSAKFQRTLSALD 184 (617)
Q Consensus 155 ~~~sLkQ~~e~i~eik~qsa~fqr~~~~~~ 184 (617)
....+...+..+.+++......+..+..+.
T Consensus 403 l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~ 432 (880)
T PRK03918 403 IEEEISKITARIGELKKEIKELKKAIEELK 432 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555555554443
No 29
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.59 E-value=0.011 Score=59.02 Aligned_cols=159 Identities=21% Similarity=0.297 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh---------------------
Q 007114 312 LRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA--------------------- 370 (617)
Q Consensus 312 l~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~--------------------- 370 (617)
|..++..++++|..-+.-...+.+++.+|+--+..++.-|+-|+--+.++.++++-+..
T Consensus 9 lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVar 88 (205)
T KOG1003|consen 9 LNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVAR 88 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666666666666666666555554443332
Q ss_pred -----------hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHh
Q 007114 371 -----------TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLI 439 (617)
Q Consensus 371 -----------lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~ 439 (617)
..+++..-|.++++.+.++.+.....+..-..-..+.-..-..+..|..+-+|+-.||.||+.||..+.
T Consensus 89 kL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVa 168 (205)
T KOG1003|consen 89 KLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVA 168 (205)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 334444444444444444444433333322222233344666788888999999999999999999999
Q ss_pred hHHHhhhhhHHHHHhhHhHHHHHHHHHHHHH
Q 007114 440 ILSEANAGLTEEISFLRDRLECLEASLHQAE 470 (617)
Q Consensus 440 ~LtEtN~eLneEL~fLksr~~~LE~~L~qa~ 470 (617)
-|-.+=-.|-+.+...+.+..++..-|.++.
T Consensus 169 kLeke~DdlE~kl~~~k~ky~~~~~eLD~~~ 199 (205)
T KOG1003|consen 169 KLEKERDDLEEKLEEAKEKYEEAKKELDETL 199 (205)
T ss_pred HHcccHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 9988888888888888888888777777553
No 30
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.51 E-value=0.026 Score=56.56 Aligned_cols=182 Identities=21% Similarity=0.228 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 007114 325 VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQN 404 (617)
Q Consensus 325 ~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn 404 (617)
.+-.-|.-|++....|+.|+..+-.+...++..|.+-..-+.- +..+...+|....-.+.||..|+..++..--++.
T Consensus 8 ~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv---~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~e 84 (205)
T KOG1003|consen 8 ALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKV---IENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYE 84 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567788889999999999999999999888776655533 3334444444444444444444444444332322
Q ss_pred hHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHH-------HHHHHHHHHhhhhh
Q 007114 405 MLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLE-------ASLHQAEETKLATA 477 (617)
Q Consensus 405 ~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE-------~~L~qa~~~K~sta 477 (617)
..--.+.= +-..+-.||-||+.+|.+|..|.+.=--+...|.+|.-.-..++ ..++.+- .--
T Consensus 85 EVarkL~i-------iE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~lt----dKL 153 (205)
T KOG1003|consen 85 EVARKLVI-------IEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELT----DKL 153 (205)
T ss_pred HHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHH----HHH
Confidence 22222221 12355678889999999999887765555555555554333222 2222221 134
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 007114 478 KDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQ 520 (617)
Q Consensus 478 kdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L~~k~k 520 (617)
|+-.++......=|+.|-.+|.+|...+.....++.-+..-+-
T Consensus 154 kEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD 196 (205)
T KOG1003|consen 154 KEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELD 196 (205)
T ss_pred hhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5566788888899999999999998888777777655544443
No 31
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.48 E-value=0.15 Score=51.56 Aligned_cols=96 Identities=23% Similarity=0.288 Sum_probs=47.3
Q ss_pred HHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHH
Q 007114 418 QDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVE 497 (617)
Q Consensus 418 EeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~E 497 (617)
++++..+......+..+-..++.+...=-.|..+|..|+++-..||..+..+++.- +....-+..-+.++=.|
T Consensus 198 ~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~-------~~~~~~~~~~i~~le~e 270 (312)
T PF00038_consen 198 EELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRL-------DEEREEYQAEIAELEEE 270 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHH-------HHHHHHHHHhhhccchh
Confidence 33333333333333333333333333334444455555555555555555444332 33334444555666666
Q ss_pred HHHHHHhhhhhhhhhHHH-HHHhh
Q 007114 498 RERLRQQISSLAMENKVM-VVKLQ 520 (617)
Q Consensus 498 rErL~~Qissl~~eNk~L-~~k~k 520 (617)
...+..+|.....+...| ..|+.
T Consensus 271 l~~l~~~~~~~~~ey~~Ll~~K~~ 294 (312)
T PF00038_consen 271 LAELREEMARQLREYQELLDVKLA 294 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666777776666665554 66665
No 32
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.41 E-value=0.011 Score=55.62 Aligned_cols=111 Identities=24% Similarity=0.350 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHH--------
Q 007114 330 IASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLE-------- 401 (617)
Q Consensus 330 ~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~e-------- 401 (617)
...||-....|..|+..++.+++.|...|.++..+|..| +.|+..||.+|-..+.++..++...+....
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL---~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l 78 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSL---QKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQL 78 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHH
Confidence 357888999999999999999999999999999888775 567778888888877777777766555432
Q ss_pred --HHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHH
Q 007114 402 --KQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSE 443 (617)
Q Consensus 402 --eqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtE 443 (617)
....+.-.+-..+.-..+...|+-.+.-+|++.|-++..|-.
T Consensus 79 ~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~ 122 (143)
T PF12718_consen 79 NRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQ 122 (143)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 233333334444444444445555555555555555555443
No 33
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.34 E-value=0.17 Score=53.53 Aligned_cols=210 Identities=22% Similarity=0.227 Sum_probs=149.9
Q ss_pred HHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhh----HHHHHHHHHHHHH
Q 007114 249 LKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAG----LRSKLDSLVKQVE 324 (617)
Q Consensus 249 Lk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REse----l~sKLkslEeqL~ 324 (617)
|+-||-.-.|-+..||-..+++.-|+..|-+=. ++=|...-||.-+.+|+.| |..|+.+= .-
T Consensus 75 L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~-----------dqsq~skrdlelafqr~rdEw~~lqdkmn~d---~S 140 (305)
T PF14915_consen 75 LNSKLEKEKQNKERLETEIESYRSRLAAAIQDH-----------DQSQTSKRDLELAFQRARDEWVRLQDKMNSD---VS 140 (305)
T ss_pred HhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhH-----------HHHHhhHHHHHHHHHHHhhHHHHHHHHhcch---HH
Confidence 455555556677889999999999998875432 3456677788888888877 34444321 11
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 007114 325 VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQN 404 (617)
Q Consensus 325 ~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn 404 (617)
.+..-|+-|-.++++||+++..-+.++-....+ |++|.=.|| ..+-.+.
T Consensus 141 ~lkd~ne~LsQqLskaesK~nsLe~elh~trda-------------LrEKtL~lE------------------~~QrdL~ 189 (305)
T PF14915_consen 141 NLKDNNEILSQQLSKAESKFNSLEIELHHTRDA-------------LREKTLALE------------------SVQRDLS 189 (305)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHH------------------HHHHHHH
Confidence 444557788888888888766655554444333 444444443 3444455
Q ss_pred hHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhh
Q 007114 405 MLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRT 484 (617)
Q Consensus 405 ~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~t 484 (617)
.....++.||++--.=+.||++.-.+-++.|.+..+|--.|+=|-+.|.-...|+.. |.-++-||.-
T Consensus 190 Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~-----------kek~ViniQ~-- 256 (305)
T PF14915_consen 190 QTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADN-----------KEKTVINIQD-- 256 (305)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhhHHH--
Confidence 566789999999999999999999999999999999999998887777766666544 4446666654
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 007114 485 KVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQ 520 (617)
Q Consensus 485 K~i~dLv~QLa~ErErL~~Qissl~~eNk~L~~k~k 520 (617)
-|.|.|.+|-.|+++ |+..|-+.|+-|+.+|.
T Consensus 257 -~f~d~~~~L~ae~ek---q~lllEErNKeL~ne~n 288 (305)
T PF14915_consen 257 -QFQDIVKKLQAESEK---QVLLLEERNKELINECN 288 (305)
T ss_pred -HHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHH
Confidence 377889999999885 56677788888888886
No 34
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.33 E-value=0.33 Score=54.99 Aligned_cols=105 Identities=18% Similarity=0.159 Sum_probs=76.5
Q ss_pred HHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhh
Q 007114 403 QNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGI 482 (617)
Q Consensus 403 qn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~ 482 (617)
...+...+++|.++|++++.-+..-+.++..|+++|.+.-+++-+ |..--+..++.||++|++++..=-..-++-+-
T Consensus 441 ~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~ee---e~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~ 517 (581)
T KOG0995|consen 441 LETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEE---EWKKCRKEIEKLEEELLNLKLVLNTSMKEAEE 517 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566799999999999999999999999999999999988865 45667778999999998665433333333333
Q ss_pred hhHHHH----HHHHHHHHHHHHHHHhhhhhhh
Q 007114 483 RTKVIT----NLVMQMAVERERLRQQISSLAM 510 (617)
Q Consensus 483 ~tK~i~----dLv~QLa~ErErL~~Qissl~~ 510 (617)
.-+.|. .+|.-...||+.+++|+.-+..
T Consensus 518 ~v~s~e~el~~~~~~~~eer~ki~~ql~~~i~ 549 (581)
T KOG0995|consen 518 LVKSIELELDRMVATGEEERQKIAKQLFAVID 549 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332 3455566789999999776643
No 35
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.29 E-value=0.071 Score=61.41 Aligned_cols=209 Identities=20% Similarity=0.221 Sum_probs=134.1
Q ss_pred HHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHH
Q 007114 295 LQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEK 374 (617)
Q Consensus 295 Lq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEK 374 (617)
+..+..+|.++.+.|.|||+++.++...=+.+...+..++.+....++|..+...-+.+=-.+=..|-.+|. +.+.+
T Consensus 427 vkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~---eE~~~ 503 (697)
T PF09726_consen 427 VKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLA---EERRQ 503 (697)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 345678899999999999999775555433455555556655555565555554444433333333333332 23455
Q ss_pred HHHHHHHHHHhHHHHHHHHH-hHH-------HHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHh--
Q 007114 375 VESLERQLRESDIQLQHAVA-YAE-------ASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEA-- 444 (617)
Q Consensus 375 v~sLEkQLkEse~QL~~A~A-Sae-------a~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEt-- 444 (617)
-..+|+||.+=..+-..+.+ .+. ...+--+.++...++||+=|.-|+..+-..|.+...+|.+...|-..
T Consensus 504 R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~ 583 (697)
T PF09726_consen 504 RASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEK 583 (697)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66788888776654332211 111 12345566788899999999999999999999999998887544332
Q ss_pred -----hhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHH---HHHHHHHHHHhhh
Q 007114 445 -----NAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQ---MAVERERLRQQIS 506 (617)
Q Consensus 445 -----N~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~Q---La~ErErL~~Qis 506 (617)
--.|--.|+.+++|..-||++|.+-.--|..=-.-+|--++-++.+--+ =-.|..-|+..|.
T Consensus 584 e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~ 653 (697)
T PF09726_consen 584 ESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIA 653 (697)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2346778899999999999999988877777666666655544443333 3334444444333
No 36
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.25 E-value=0.085 Score=63.45 Aligned_cols=223 Identities=20% Similarity=0.230 Sum_probs=150.3
Q ss_pred HhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchh
Q 007114 228 SLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQ 307 (617)
Q Consensus 228 SlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~ 307 (617)
|=++.-+||+.|..-...-+.+...+|+. ||....+-.|.-+.+|-.+.+.-..+.+..
T Consensus 776 s~~~v~~le~~l~~~~~~~~~~~~~~~~~-------ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~-------------- 834 (1293)
T KOG0996|consen 776 SKESVEKLERALSKMSDKARQHQEQLHEL-------EERVRKLRERIPELENRLEKLTASVKRLAE-------------- 834 (1293)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHhHHHHHHHHHHHHHH--------------
Confidence 44455567777776666666666665554 444455555555555655555555555544
Q ss_pred chhhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhh-----HHhhHHHhhhhhhhhhhh
Q 007114 308 REAGLRSKLDSLVKQ----------VEVKESVIASLRENLSEAQARADGAEVRCKSL-----AETNIELNEDLKGSRATS 372 (617)
Q Consensus 308 REsel~sKLkslEeq----------L~~len~~e~LKe~i~~AEsra~~aeskc~~L-----teTN~eL~~el~~Lk~ls 372 (617)
++..+.+.++++|.+ |+.++..|+++|..+.++...+.- .++.+.| .-.|..++..-+.++.+.
T Consensus 835 ~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~ 913 (1293)
T KOG0996|consen 835 LIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQKDKVEKIN 913 (1293)
T ss_pred HHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHhHHHHHHHH
Confidence 444445555555544 336777778888777777433333 3444444 344555666666666677
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHH
Q 007114 373 EKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEI 452 (617)
Q Consensus 373 EKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL 452 (617)
+++.-|+..++-...+...+..-....+...+.+...+.+++.=+++|.+.+...+.++.--+.+..--.+.=-+++.++
T Consensus 914 ~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~ 993 (1293)
T KOG0996|consen 914 EQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKEL 993 (1293)
T ss_pred HHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777766777777888888888899888888888888888888777777777777777888888
Q ss_pred HhhHhHHHHHHHHHHHHHHH
Q 007114 453 SFLRDRLECLEASLHQAEET 472 (617)
Q Consensus 453 ~fLksr~~~LE~~L~qa~~~ 472 (617)
.-+++.++.++++...+...
T Consensus 994 ~~~k~~~e~i~k~~~~lk~~ 1013 (1293)
T KOG0996|consen 994 RDLKSELENIKKSENELKAE 1013 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 88888888888887766543
No 37
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.25 E-value=0.86 Score=55.24 Aligned_cols=63 Identities=19% Similarity=0.269 Sum_probs=37.8
Q ss_pred hhHHHhHHHHHHHHHHHHhhhhhhhccccccchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 007114 111 DSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSAL 183 (617)
Q Consensus 111 DSEv~Ele~~~~tlq~~I~~~~~~i~s~~~~g~~f~~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~ 183 (617)
+.++.....-+..++.+...++. .+-..+..|++....+.+.+.++.++..+....+-+|..|
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~f 544 (1201)
T PF12128_consen 482 QEQQNQAQQAVEELQAEEQELRK----------ERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEF 544 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHH
Confidence 34444444445555544444443 2445567778888888888888888887776544444443
No 38
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.16 E-value=0.12 Score=51.64 Aligned_cols=133 Identities=25% Similarity=0.281 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHH
Q 007114 371 TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTE 450 (617)
Q Consensus 371 lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLne 450 (617)
|.+.+..|.+|++.. ++|.--+.+..++++.+.+.++.+|.--..|-......|.-.++-.++..-|-+.|-+|..
T Consensus 41 L~~e~~~L~~q~~s~----Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~ 116 (193)
T PF14662_consen 41 LAEEITDLRKQLKSL----QQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLA 116 (193)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 455566777788765 4666777778888888899999999888888888888998899999999999999999999
Q ss_pred HHHhhHhHHHHH-------HHHHHHHHHHhhhhhHhhhhhhHHHHHH----------HHHHHHHHHHHHHhhhh
Q 007114 451 EISFLRDRLECL-------EASLHQAEETKLATAKDIGIRTKVITNL----------VMQMAVERERLRQQISS 507 (617)
Q Consensus 451 EL~fLksr~~~L-------E~~L~qa~~~K~stakdI~~~tK~i~dL----------v~QLa~ErErL~~Qiss 507 (617)
|..-++.|...| ..+++.-++-....-.-+.-+|+-|.+| +..|-.|.-||..|++-
T Consensus 117 e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q 190 (193)
T PF14662_consen 117 ERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQ 190 (193)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999876655 5566533333222222233334444443 44555666666666643
No 39
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=97.12 E-value=0.7 Score=51.86 Aligned_cols=101 Identities=21% Similarity=0.299 Sum_probs=82.3
Q ss_pred HHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHH---HHhhhhhHhhhh
Q 007114 406 LYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAE---ETKLATAKDIGI 482 (617)
Q Consensus 406 l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~---~~K~stakdI~~ 482 (617)
|.-.+.+.++.|.+|..-.-+-|.|.-.|-++|-.+-++|. .|+...+-..+.||+.|.+++ +.++.-+.+.-.
T Consensus 485 Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e---~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vq 561 (622)
T COG5185 485 LEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENE---RELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQ 561 (622)
T ss_pred HHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHH
Confidence 45568999999999999999999999999999999999985 578888999999999998765 456666776666
Q ss_pred hhHHHH-HHHHHHHHHHHHHHHhhhhhh
Q 007114 483 RTKVIT-NLVMQMAVERERLRQQISSLA 509 (617)
Q Consensus 483 ~tK~i~-dLv~QLa~ErErL~~Qissl~ 509 (617)
++.+-- .+.--+..+|..+|+||--+.
T Consensus 562 s~~i~ld~~~~~~n~~r~~i~k~V~~v~ 589 (622)
T COG5185 562 STEIKLDELKVDLNRKRYKIHKQVIHVI 589 (622)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665543 355567889999999986553
No 40
>PRK01156 chromosome segregation protein; Provisional
Probab=97.10 E-value=0.91 Score=52.64 Aligned_cols=43 Identities=19% Similarity=0.222 Sum_probs=22.0
Q ss_pred hhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHH
Q 007114 346 GAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQ 388 (617)
Q Consensus 346 ~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~Q 388 (617)
....+...|.....++......+..+..++..+++.++.....
T Consensus 343 ~~~~~~~~l~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~ 385 (895)
T PRK01156 343 KKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKN 385 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3344444455555555555555555555555555555544443
No 41
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.07 E-value=1.5 Score=54.76 Aligned_cols=214 Identities=17% Similarity=0.145 Sum_probs=123.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccCCCCCCCCCCCcccccccchhhhhhhccHHHHHHHHHHHHHH
Q 007114 149 EEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLEKS 228 (617)
Q Consensus 149 ~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~~~~~~~~~~~~~~~~ed~~~~~~~~~~~mqt~eQqR~iLrMLEkS 228 (617)
..+|...+..|.++.+.+.+|..+..++++-...+...-+ .. ++......-+...
T Consensus 299 ~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyle-----------------L~--------ee~lr~q~ei~~l 353 (1486)
T PRK04863 299 RRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLN-----------------LV--------QTALRQQEKIERY 353 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HH--------HHHHHHHHHHHHH
Confidence 4567778888888888888888888888887765532100 00 0001112223333
Q ss_pred hhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHH---HHhHHHHhhhcccc
Q 007114 229 LAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKEL---LGRLQIVLFNMNGS 305 (617)
Q Consensus 229 lA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel---~gkLq~~qf~L~as 305 (617)
...--+|+..+.+..+..++++.++...+.+...+|+....+-.++.+.......+....... +.++...+--+...
T Consensus 354 ~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~ 433 (1486)
T PRK04863 354 QADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLP 433 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 333345777777777777777777777777788888877777777777666666666665433 34444444444435
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHh------------hHHHhhhhhhhhhhhH
Q 007114 306 VQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAET------------NIELNEDLKGSRATSE 373 (617)
Q Consensus 306 ~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteT------------N~eL~~el~~Lk~lsE 373 (617)
.....+|.+.+...+.++..++..+.+++.+...++...++-......+... =.++=.....++-+-.
T Consensus 434 ~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~ 513 (1486)
T PRK04863 434 DLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAE 513 (1486)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5566666666666666666666666666666655555554444433333111 0111111122222555
Q ss_pred HHHHHHHHHHHhHH
Q 007114 374 KVESLERQLRESDI 387 (617)
Q Consensus 374 Kv~sLEkQLkEse~ 387 (617)
.+..+..+|.+.+-
T Consensus 514 ~~~~~~~~~~~l~~ 527 (1486)
T PRK04863 514 QLQQLRMRLSELEQ 527 (1486)
T ss_pred hhHHHHHHHHHHHH
Confidence 66677777777666
No 42
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.06 E-value=0.00014 Score=84.21 Aligned_cols=364 Identities=21% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhHH---HhHHHHHHHHHHHHhhhhhhhcccccc-chhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 007114 102 AFDLLSGLLDSEL---RELENFITTLEADFVKAHELISSYTEL-GKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQ 177 (617)
Q Consensus 102 eFDlL~gilDSEv---~Ele~~~~tlq~~I~~~~~~i~s~~~~-g~~f~~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fq 177 (617)
+.|.|..-+|-|. .+|+.=+..++.+|..++.++-.+... .+.+-....|| ...|..+++++-+.+...++..
T Consensus 272 e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL---~~~L~el~e~le~~~~~~~~Le 348 (859)
T PF01576_consen 272 ELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKL---ERKLQELQEQLEEANAKVSSLE 348 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888654 567777888999999999887665442 11121222222 2345555666666666666666
Q ss_pred HHHhhhhccCCCCCCCCCCCcccccccchhhhhhhccHHHHHHHHHHHHHHhhhhhhhHHHhHHHHHHHHHHHhhhhhhh
Q 007114 178 RTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFE 257 (617)
Q Consensus 178 r~~~~~~~~~~~~~~~~~~~~ed~~~~~~~~~~~mqt~eQqR~iLrMLEkSlA~e~dLEkkL~es~~~eeeLk~kL~~~e 257 (617)
|+-..|..+- + ....-|++.-+.--.|||+-.-+-..-.+++.++....
T Consensus 349 K~k~rL~~El-----------e--------------------Dl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~ 397 (859)
T PF01576_consen 349 KTKKRLQGEL-----------E--------------------DLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQ 397 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHH-----------H--------------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 6654442110 0 11122444444445556665555555556666665555
Q ss_pred HHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007114 258 QELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENL 337 (617)
Q Consensus 258 qe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i 337 (617)
.+...+.-.+..++..+|.--|..+-+......+-..-..++..|....-.-++....+..|++..+.|+....+++..+
T Consensus 398 ~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~l 477 (859)
T PF01576_consen 398 AERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQL 477 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666665555555544444444444444443333333333334455666666666666666666
Q ss_pred HHHHhhhhhhhHhhhhhHHhhHHHhhhh--------------------------------------------------hh
Q 007114 338 SEAQARADGAEVRCKSLAETNIELNEDL--------------------------------------------------KG 367 (617)
Q Consensus 338 ~~AEsra~~aeskc~~LteTN~eL~~el--------------------------------------------------~~ 367 (617)
.++|...+..+.+..-|.-.-.+++.++ +.
T Consensus 478 eE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~e 557 (859)
T PF01576_consen 478 EEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNE 557 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666555555554443333333222 11
Q ss_pred hhh-----------hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhh-------hh
Q 007114 368 SRA-----------TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKA-------DS 429 (617)
Q Consensus 368 Lk~-----------lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskA-------ES 429 (617)
|.. +...+.-+..|++++..++..+....+....++..+...++.|.+=++++...+..| |+
T Consensus 558 Le~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~ 637 (859)
T PF01576_consen 558 LEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAES 637 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 222334455555666556666665666555566666666667777777777665543 44
Q ss_pred hhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHH
Q 007114 430 RADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERE 499 (617)
Q Consensus 430 RAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErE 499 (617)
..+-+..+|..|+-.|..|..+..-|.+++..|+..|..+...-....+-+-.-..-+..|..+|..||.
T Consensus 638 el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~ 707 (859)
T PF01576_consen 638 ELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQD 707 (859)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 4444455566677777778888888888888888888765555444433332222223334455555554
No 43
>PRK11637 AmiB activator; Provisional
Probab=97.02 E-value=0.59 Score=50.13 Aligned_cols=44 Identities=16% Similarity=0.196 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhh
Q 007114 311 GLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSL 354 (617)
Q Consensus 311 el~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~L 354 (617)
+++.+|++++++++..++.+.+++..+.+++......+.+...+
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~ 87 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQA 87 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666555555555555555555554444443333
No 44
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.02 E-value=1.8 Score=54.81 Aligned_cols=352 Identities=19% Similarity=0.201 Sum_probs=164.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccCCCCCCCCCCCcccccccchhhhhhhccHHHHHHHHHHHH
Q 007114 147 EMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLE 226 (617)
Q Consensus 147 ~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~~~~~~~~~~~~~~~~ed~~~~~~~~~~~mqt~eQqR~iLrMLE 226 (617)
.+-..|..+..-+++..-.+.-.|.+..-|-.+...|..+-.- - ..-+.+-......|||-. +++.+.+
T Consensus 728 ~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~------l--~~e~~~L~~~l~~lQt~~---~~~e~s~ 796 (1822)
T KOG4674|consen 728 TLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEK------L--SAEQESLQLLLDNLQTQK---NELEESE 796 (1822)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H--HHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 4556777778888888888888888887777777655321110 0 000011122334555533 3333332
Q ss_pred HHhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccch
Q 007114 227 KSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSV 306 (617)
Q Consensus 227 kSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~ 306 (617)
- |..-++|.++.+....-..|+.++ +++...+.+...+..--+-.|-|....+......++.-|-..+.++.-..
T Consensus 797 ~--~~k~~~e~~i~eL~~el~~lk~kl---q~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le 871 (1822)
T KOG4674|consen 797 M--ATKDKCESRIKELERELQKLKKKL---QEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLE 871 (1822)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 233344444444433334444333 33333444444444444444444444444444333333333333333333
Q ss_pred hchhhHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhh
Q 007114 307 QREAGLRSKLDSLVKQVE-------------------VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKG 367 (617)
Q Consensus 307 ~REsel~sKLkslEeqL~-------------------~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~ 367 (617)
.+=++|..+|++.+.++. ....-+.+||.++-.|.+...+-....+.+..+=.+.+.++++
T Consensus 872 ~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde 951 (1822)
T KOG4674|consen 872 IKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDE 951 (1822)
T ss_pred HHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333332222222 2222334444444444444444444444444444444444444
Q ss_pred hhh---------------hhHHHHHHHHHHHHhHHH-----------HHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHH
Q 007114 368 SRA---------------TSEKVESLERQLRESDIQ-----------LQHAVAYAEASLEKQNMLYSTVKDMENLIQDLK 421 (617)
Q Consensus 368 Lk~---------------lsEKv~sLEkQLkEse~Q-----------L~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK 421 (617)
.+. +.+++..|++++-....+ +.+++.....-+.+...+...++++...|.++|
T Consensus 952 ~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k 1031 (1822)
T KOG4674|consen 952 TRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQ 1031 (1822)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 333333333333333322 223333333333344445555666666666666
Q ss_pred Hhhhhhhhhhhh----HHHHH---hhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHH
Q 007114 422 LKVSKADSRADS----AEEKL---IILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQM 494 (617)
Q Consensus 422 ~KvskAESRAe~----AE~kc---~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QL 494 (617)
..+..-..-+.. +|... .-++.+=.+|.++++-+.+.+..|.....++...=..-.+++..+.+...+
T Consensus 1032 ~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leq----- 1106 (1822)
T KOG4674|consen 1032 NDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQ----- 1106 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHH-----
Confidence 554433222222 22222 233333344555555555566666665555555555555666665555443
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHhhh
Q 007114 495 AVERERLRQQISSLAMENKVMVVKLQQ 521 (617)
Q Consensus 495 a~ErErL~~Qissl~~eNk~L~~k~k~ 521 (617)
|+.-+..+|.+|-..|++|...+..
T Consensus 1107 --e~~~~~~~~~~L~~qNslLh~qie~ 1131 (1822)
T KOG4674|consen 1107 --EVNELKKRIESLEKQNSLLHDQFEE 1131 (1822)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777666653
No 45
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.99 E-value=0.071 Score=61.39 Aligned_cols=34 Identities=29% Similarity=0.485 Sum_probs=28.3
Q ss_pred HHHHHHHhhhhhhhHHHhHHHHHHHHHHHhhhhhhhH
Q 007114 222 LRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQ 258 (617)
Q Consensus 222 LrMLEkSlA~e~dLEkkL~es~~~eeeLk~kL~~~eq 258 (617)
..=||.-|.+ |-..|..+|+.|.||+.++...+.
T Consensus 420 ~~rLE~dvkk---LraeLq~~Rq~E~ELRsqis~l~~ 453 (697)
T PF09726_consen 420 ISRLEADVKK---LRAELQSSRQSEQELRSQISSLTN 453 (697)
T ss_pred HHHHHHHHHH---HHHHHHhhhhhHHHHHHHHhhccc
Confidence 4458888888 889999999999999999875443
No 46
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.96 E-value=0.28 Score=56.03 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=32.6
Q ss_pred HhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHH
Q 007114 275 FEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVE 324 (617)
Q Consensus 275 ~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~ 324 (617)
+|-+..++-|.|..-.+..|++.+--.+.-...+.....+....||.+|.
T Consensus 11 ~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~ 60 (617)
T PF15070_consen 11 AERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLS 60 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777776666666665555556666655665555
No 47
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.77 E-value=0.39 Score=54.34 Aligned_cols=287 Identities=21% Similarity=0.220 Sum_probs=140.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccCCCCCCCCCCCcccccccchhhhhhhccHHHHHHHHHHHH
Q 007114 147 EMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLE 226 (617)
Q Consensus 147 ~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~~~~~~~~~~~~~~~~ed~~~~~~~~~~~mqt~eQqR~iLrMLE 226 (617)
.+.++|.+|=+..+++..|=..+..+.--|+.++ ..+. ++++...
T Consensus 46 ~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~---------~~~t----------s~ik~~y---------------- 90 (546)
T KOG0977|consen 46 ELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVV---------GRET----------SGIKAKY---------------- 90 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------cCCC----------cchhHHh----------------
Confidence 4567777777777777777777777776666655 2211 1222222
Q ss_pred HHhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccch
Q 007114 227 KSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSV 306 (617)
Q Consensus 227 kSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~ 306 (617)
|..|..++...++-.-..+.++.+...+.+..+++-.||.+++.....-+.......++|..++..++=.-
T Consensus 91 ---------e~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~k 161 (546)
T KOG0977|consen 91 ---------EAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLK 161 (546)
T ss_pred ---------hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHH
Confidence 22233344444444444555566666666666666666666666666666666666666666655554333
Q ss_pred hchhhHHHHHH--------------HHHHHHH-------HHHHHHHHHHHHHHHHHhhhhh--hhHhhhhhHHh------
Q 007114 307 QREAGLRSKLD--------------SLVKQVE-------VKESVIASLRENLSEAQARADG--AEVRCKSLAET------ 357 (617)
Q Consensus 307 ~REsel~sKLk--------------slEeqL~-------~len~~e~LKe~i~~AEsra~~--aeskc~~LteT------ 357 (617)
.|=..+.+.++ .+-.||. +++|-+.+|++.+.-...--.+ -+...+.=.+|
T Consensus 162 rr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~ 241 (546)
T KOG0977|consen 162 RRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNRE 241 (546)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchH
Confidence 33222222222 2222221 3444444444433322110000 00000000011
Q ss_pred --hHHHhhhhhhhhh-----hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhh
Q 007114 358 --NIELNEDLKGSRA-----TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSR 430 (617)
Q Consensus 358 --N~eL~~el~~Lk~-----lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESR 430 (617)
-.+|..-|.++++ ...-=+.+|.+ |+..++.+..+++-....++...-++.-|-+.|.+|..|++..|+|
T Consensus 242 ~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~---Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~ 318 (546)
T KOG0977|consen 242 YFKNELALAIREIRAQYEAISRQNRKDIESW---YKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESR 318 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhcccccc
Confidence 1122222222222 00000122222 4445666666666656666667777888888888888888888874
Q ss_pred hhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHH
Q 007114 431 ADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERL 501 (617)
Q Consensus 431 Ae~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL 501 (617)
|.-|...+.+|+..+..-...-.++.+.|...... +.+=.++|..|.+.|
T Consensus 319 --------------n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~-------mReec~~l~~Elq~L 368 (546)
T KOG0977|consen 319 --------------NSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAK-------MREECQQLSVELQKL 368 (546)
T ss_pred --------------ChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHH-------HHHHHHHHHHHHHHh
Confidence 55555555555554444444444444444433221 233345555555554
No 48
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.73 E-value=0.11 Score=49.12 Aligned_cols=93 Identities=22% Similarity=0.260 Sum_probs=49.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHH
Q 007114 308 REAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDI 387 (617)
Q Consensus 308 REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~ 387 (617)
|=..+..+++.+|.....++..|.+|-..+...|......+.+.......--+-.........++.|+..||.+|..++.
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~ 94 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEK 94 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 33344444554554444555555555555555554444444443333222222222222222578889999999888888
Q ss_pred HHHHHHHhHHHHH
Q 007114 388 QLQHAVAYAEASL 400 (617)
Q Consensus 388 QL~~A~ASaea~~ 400 (617)
.|..+..-.....
T Consensus 95 ~L~e~~ekl~e~d 107 (143)
T PF12718_consen 95 KLKETTEKLREAD 107 (143)
T ss_pred HHHHHHHHHHHHH
Confidence 8876665544433
No 49
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.66 E-value=1.6 Score=48.93 Aligned_cols=52 Identities=25% Similarity=0.288 Sum_probs=30.9
Q ss_pred HHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh---h----hHHHHHHHHHHHHhHHHHHH
Q 007114 340 AQARADGAEVRCKSLAETNIELNEDLKGSRA---T----SEKVESLERQLRESDIQLQH 391 (617)
Q Consensus 340 AEsra~~aeskc~~LteTN~eL~~el~~Lk~---l----sEKv~sLEkQLkEse~QL~~ 391 (617)
++............+.+.|-+|..++..|+. + -+.+..++++|++.+.+...
T Consensus 308 vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~ 366 (569)
T PRK04778 308 VEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDE 366 (569)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455556677777788888887777 2 23355555555555555443
No 50
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.66 E-value=1.3 Score=48.00 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=31.3
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 007114 146 IEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALD 184 (617)
Q Consensus 146 ~~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~~ 184 (617)
..+.+++...+..+.+.+.++..+..+.+.|++.+..+.
T Consensus 170 ~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~ 208 (562)
T PHA02562 170 KLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQR 208 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 345677778888888888888888888888888887664
No 51
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.65 E-value=2.5 Score=51.07 Aligned_cols=138 Identities=20% Similarity=0.267 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHH
Q 007114 313 RSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHA 392 (617)
Q Consensus 313 ~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A 392 (617)
..-+.+++.||..++..+.+|+..+.+++.+...++...+.+ ...++..-+.++.-+.++-.-
T Consensus 828 ~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~-----------------~~el~~~k~k~~~~dt~i~~~ 890 (1174)
T KOG0933|consen 828 EKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKA-----------------QAELKDQKAKQRDIDTEISGL 890 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHH-----------------HHHHHHHHHHHHhhhHHHhhh
Confidence 333445555555555555555555555555555544444433 334444455555556555555
Q ss_pred HHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHH-----------------hhhhhHHHHHhh
Q 007114 393 VAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSE-----------------ANAGLTEEISFL 455 (617)
Q Consensus 393 ~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtE-----------------tN~eLneEL~fL 455 (617)
..+-+...-+-.+...++.-+++=+.-++..-..+..+++.-+.+..-|++ +=-+-.++|.-|
T Consensus 891 ~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~L 970 (1174)
T KOG0933|consen 891 LTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKL 970 (1174)
T ss_pred hhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHhHHHHHHHHh
Confidence 555566555555666666666666666666666666666666666666652 113445778888
Q ss_pred HhHHHHHHHHHH
Q 007114 456 RDRLECLEASLH 467 (617)
Q Consensus 456 ksr~~~LE~~L~ 467 (617)
..+...|++.+.
T Consensus 971 q~k~~~l~k~vn 982 (1174)
T KOG0933|consen 971 QEKKEKLEKTVN 982 (1174)
T ss_pred hHHHHHHHhhcC
Confidence 888888888775
No 52
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.62 E-value=0.00049 Score=77.73 Aligned_cols=164 Identities=24% Similarity=0.312 Sum_probs=0.0
Q ss_pred HhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhH---HHHHHHHHhHHHhHhhhHHHHHHHHHhhh
Q 007114 349 VRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYA---EASLEKQNMLYSTVKDMENLIQDLKLKVS 425 (617)
Q Consensus 349 skc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASa---ea~~eeqn~l~S~IsdMEnvIEeLK~Kvs 425 (617)
+++..|..+|.+|..++..|+...+.+..|+++.+..+.++..+...- ...+.+...+..++..+..++.+.-..+.
T Consensus 257 ~~i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~ 336 (722)
T PF05557_consen 257 AHIRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFD 336 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 467889999999999999999988889999999988888877766443 33444566777788888887776442111
Q ss_pred hhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 007114 426 KADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQI 505 (617)
Q Consensus 426 kAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qi 505 (617)
--+ .--..+..|--.|+-|.++++.+.+.+..|+..+..++..+...-..|.--+..+.. +..-+.||+.|.
T Consensus 337 sPe----~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~----~~~~~~RLerq~ 408 (722)
T PF05557_consen 337 SPE----DLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEA----LKKLIRRLERQK 408 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHH----HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 111 111234555556666666666666666666666655555444333333322222221 223344555555
Q ss_pred hhhhhhhHHHHHHhh
Q 007114 506 SSLAMENKVMVVKLQ 520 (617)
Q Consensus 506 ssl~~eNk~L~~k~k 520 (617)
.-+.+|...|..-++
T Consensus 409 ~L~~kE~d~LR~~L~ 423 (722)
T PF05557_consen 409 ALATKERDYLRAQLK 423 (722)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555444
No 53
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.58 E-value=3 Score=51.15 Aligned_cols=139 Identities=22% Similarity=0.222 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccCCCCCCCCCCCcccccccchhhhhhhccHHHHHHHHHHHHHHhhhhhh
Q 007114 155 SEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLEKSLAREMD 234 (617)
Q Consensus 155 ~~~sLkQ~~e~i~eik~qsa~fqr~~~~~~~~~~~~~~~~~~~~ed~~~~~~~~~~~mqt~eQqR~iLrMLEkSlA~e~d 234 (617)
+...|+--.+.=.+|+.-.+.-+.+++.+ ...+.++-+-|-.-=|.|||+=|..--
T Consensus 1410 A~~A~~~A~~~~~~l~~~~ae~eq~~~~v------------------------~ea~~~aseA~~~Aq~~~~~a~as~~q 1465 (1758)
T KOG0994|consen 1410 AGGALLMAGDADTQLRSKLAEAEQTLSMV------------------------REAKLSASEAQQSAQRALEQANASRSQ 1465 (1758)
T ss_pred cchHHHHhhhHHHHHHHHHHHHHHHHHHH------------------------HHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 44445444555555566666666666533 334445555555556888999888888
Q ss_pred hHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhc-chHHHHhhhHHHHHHhHHHHhhhcc---cchhchh
Q 007114 235 LEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAE-NSAEVLKGISKELLGRLQIVLFNMN---GSVQREA 310 (617)
Q Consensus 235 LEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAE-Na~EvL~g~skel~gkLq~~qf~L~---as~~REs 310 (617)
.|+...+.+.+.++++.=|..-.-.-...|+.|+.+-+.++-.+ -.++-|.|.-++-+.+|..+..=|+ |-+.|=.
T Consensus 1466 ~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~ 1545 (1758)
T KOG0994|consen 1466 MEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAE 1545 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHH
Confidence 88888899998888888887766667778888888888777654 3567788888888888877665543 3344444
Q ss_pred hHHHHHH
Q 007114 311 GLRSKLD 317 (617)
Q Consensus 311 el~sKLk 317 (617)
.|.+.-+
T Consensus 1546 ~L~s~A~ 1552 (1758)
T KOG0994|consen 1546 NLQSEAE 1552 (1758)
T ss_pred HHHHHHH
Confidence 4444433
No 54
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=0.38 Score=56.55 Aligned_cols=129 Identities=23% Similarity=0.267 Sum_probs=78.5
Q ss_pred cccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh-----------
Q 007114 302 MNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA----------- 370 (617)
Q Consensus 302 L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~----------- 370 (617)
|+.-..|..++.+++.++++| ++.+-..++.+-.-......-|+.+..++--...++.+|++
T Consensus 801 l~e~~~~l~~~q~e~~~~keq-------~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ 873 (970)
T KOG0946|consen 801 LSEESTRLQELQSELTQLKEQ-------IQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKE 873 (970)
T ss_pred hhhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 443444444444444444444 55555556655555556666666666666666666666554
Q ss_pred hhHHHHHHHHHHHHhHHH--HHHHHHh-----HHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHH
Q 007114 371 TSEKVESLERQLRESDIQ--LQHAVAY-----AEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEK 437 (617)
Q Consensus 371 lsEKv~sLEkQLkEse~Q--L~~A~AS-----aea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~k 437 (617)
++||+.+|+.|.-.+..- +...+.+ ...++.+|+.+.-.+.|.++.|.-||.++.+.+-+-+--|.+
T Consensus 874 ltEk~~sl~~qadse~l~ka~~~~k~~nl~lki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q~~eeie~e 947 (970)
T KOG0946|consen 874 LTEKISSLEAQADSETLSKALKTVKSENLSLKIVSNKQEQEELLVLLADQKEKIQALKEALEDLNQPVEEIEDE 947 (970)
T ss_pred HhhhhhhHHHhhcchHHHHHHHHhhcccchhcccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhCCChhhHHhh
Confidence 899999999765443211 1111111 223455677888888999999999999888888776554443
No 55
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.54 E-value=3 Score=50.60 Aligned_cols=82 Identities=15% Similarity=0.198 Sum_probs=47.7
Q ss_pred hhhhhHHhhHHHhhhhhhhhh----hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhh
Q 007114 350 RCKSLAETNIELNEDLKGSRA----TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVS 425 (617)
Q Consensus 350 kc~~LteTN~eL~~el~~Lk~----lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~Kvs 425 (617)
.|..+.+-+...+++++.|+. ...|+..+...+.+.+.++...+..+++..++...+...+.+.-.-..++|.++-
T Consensus 282 ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~ 361 (1074)
T KOG0250|consen 282 QLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIR 361 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444 3445566666666666777777777777666666666666666666666666666
Q ss_pred hhhhhh
Q 007114 426 KADSRA 431 (617)
Q Consensus 426 kAESRA 431 (617)
+++++.
T Consensus 362 ~~~n~i 367 (1074)
T KOG0250|consen 362 EIENSI 367 (1074)
T ss_pred HHHHHH
Confidence 665533
No 56
>PRK11637 AmiB activator; Provisional
Probab=96.35 E-value=1.4 Score=47.39 Aligned_cols=9 Identities=22% Similarity=0.501 Sum_probs=5.0
Q ss_pred cccccCCch
Q 007114 581 LRRIDAGLL 589 (617)
Q Consensus 581 vr~i~~~~l 589 (617)
|+.+.+|.+
T Consensus 342 v~A~~~G~V 350 (428)
T PRK11637 342 VKAIADGRV 350 (428)
T ss_pred EEecCCeEE
Confidence 555555554
No 57
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.22 E-value=3.6 Score=48.09 Aligned_cols=310 Identities=21% Similarity=0.234 Sum_probs=168.6
Q ss_pred cccccchhhHHHHHhhhhHHHHHHHHH-------HHHHHHHHhh----HHHHHHHhhhhccCCCCCCCCCCCcccccccc
Q 007114 137 SYTELGKASIEMEEKLLDSEDSLQQSR-------DQILEIKKQS----AKFQRTLSALDREGNWISDKDTGSLEDDQFLN 205 (617)
Q Consensus 137 s~~~~g~~f~~~~~KL~~~~~sLkQ~~-------e~i~eik~qs----a~fqr~~~~~~~~~~~~~~~~~~~~ed~~~~~ 205 (617)
+|......+..++..|..+..-+-|.- +.++.++.+- +.|+-|++.|+.
T Consensus 304 slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~-------------------- 363 (786)
T PF05483_consen 304 SLQESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKE-------------------- 363 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 444545566667776666665555442 3344555443 477888876631
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhh-hhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHH
Q 007114 206 ENAKIKLQTAEQQRHFLRMLEKSLA-REMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVL 284 (617)
Q Consensus 206 ~~~~~~mqt~eQqR~iLrMLEkSlA-~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL 284 (617)
.=|.|||| +..+|.-|- --++|.++=.+..+.-+--..+=...+.-+.-|++-..-+.++ =--+-..|-|
T Consensus 364 ------lL~~Eqqr--~~~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~qkll~ek-k~~eki~E~l 434 (786)
T PF05483_consen 364 ------LLTTEQQR--LKKNEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKILAEKQKLLDEK-KQFEKIAEEL 434 (786)
T ss_pred ------HHHHHHHH--HHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 12567777 455554432 2456666654433322111111111122222222222111110 0112345567
Q ss_pred hhhHHHHHHhHHHHhh-------hcccchhchhhHHHHHHHHHHHHH----------------------------HHHHH
Q 007114 285 KGISKELLGRLQIVLF-------NMNGSVQREAGLRSKLDSLVKQVE----------------------------VKESV 329 (617)
Q Consensus 285 ~g~skel~gkLq~~qf-------~L~as~~REsel~sKLkslEeqL~----------------------------~len~ 329 (617)
+|...++.|-||+.|. .|++....|..-.-.++.+..+|+ +|-..
T Consensus 435 q~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~e 514 (786)
T PF05483_consen 435 QGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALE 514 (786)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7777777777776554 455555555444333333333332 44445
Q ss_pred HHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh-hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHH
Q 007114 330 IASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA-TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYS 408 (617)
Q Consensus 330 ~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~-lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S 408 (617)
...+.++|.....+....-..++.|.+||.+|..+++.++. +..|...++-.+..++.-..+-.-. -.....
T Consensus 515 lKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e-------~~~k~k 587 (786)
T PF05483_consen 515 LKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECE-------ILKKEK 587 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHH-------HhhhHH
Confidence 55667778788777777778888999999999999998888 7777778888888777644332222 222334
Q ss_pred hHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHH----HHhhhhhHhhhh
Q 007114 409 TVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAE----ETKLATAKDIGI 482 (617)
Q Consensus 409 ~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~----~~K~stakdI~~ 482 (617)
.|.-+++-+..|+-.|-+-..+.+.-..+-+.|----..-+.-++.|..+++.|+..+..+. ..=...-+||..
T Consensus 588 q~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~ 665 (786)
T PF05483_consen 588 QMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIES 665 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 56777777777776665444333332333333333333334456677777887777775332 223344555553
No 58
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.72 Score=54.38 Aligned_cols=164 Identities=20% Similarity=0.225 Sum_probs=77.4
Q ss_pred hHHHHHHhHHHHhhhcccchhchhhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhh-
Q 007114 287 ISKELLGRLQIVLFNMNGSVQREAGLRSKL-----------DSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSL- 354 (617)
Q Consensus 287 ~skel~gkLq~~qf~L~as~~REsel~sKL-----------kslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~L- 354 (617)
+++....+++.++++++|.+.+=+-=.+.| +.+++.+..+-+....||+++..-+.+.-+.-++.-.+
T Consensus 647 ~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~ 726 (970)
T KOG0946|consen 647 LAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLL 726 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHH
Confidence 455555666666666666654322222222 22333333344444444444444444333322222222
Q ss_pred --HHhhHHHhhhhhhh----hhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhh
Q 007114 355 --AETNIELNEDLKGS----RATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKAD 428 (617)
Q Consensus 355 --teTN~eL~~el~~L----k~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAE 428 (617)
.+.+--.+++++.+ +.+..+...|.++|.+.+.-.+.-+++...-.-.+..+.--+++=|++|+++|. .+.--
T Consensus 727 q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~-l~e~~ 805 (970)
T KOG0946|consen 727 QGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKN-LSEES 805 (970)
T ss_pred hHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHh-hhhhh
Confidence 22222223333332 335555566777775555555555555443333445555556777777777666 44444
Q ss_pred hhhhhHHHHHhhHHHhhhhhHHH
Q 007114 429 SRADSAEEKLIILSEANAGLTEE 451 (617)
Q Consensus 429 SRAe~AE~kc~~LtEtN~eLneE 451 (617)
+|-++-.++.+.+-+.-..+.++
T Consensus 806 ~~l~~~q~e~~~~keq~~t~~~~ 828 (970)
T KOG0946|consen 806 TRLQELQSELTQLKEQIQTLLER 828 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554443333333
No 59
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.07 E-value=3.4 Score=46.43 Aligned_cols=99 Identities=15% Similarity=0.195 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHH-hhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhH
Q 007114 328 SVIASLRENLSEAQARADGAEVRCKSLAETNIEL-NEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNML 406 (617)
Q Consensus 328 n~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL-~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l 406 (617)
.-...+.+.+..++........+...|... -.| ..++...+++.+++..++++++.....+......-...+++++.+
T Consensus 310 k~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s-Y~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel 388 (569)
T PRK04778 310 KNSDTLPDFLEHAKEQNKELKEEIDRVKQS-YTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEI 388 (569)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 333344444444444444444444444322 112 344555555666666666666655555444444444455555555
Q ss_pred HHhHhhhHHHHHHHHHhhhhh
Q 007114 407 YSTVKDMENLIQDLKLKVSKA 427 (617)
Q Consensus 407 ~S~IsdMEnvIEeLK~KvskA 427 (617)
...+..++.-..+++..+...
T Consensus 389 ~e~leeie~eq~ei~e~l~~L 409 (569)
T PRK04778 389 LKQLEEIEKEQEKLSEMLQGL 409 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555444443
No 60
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.04 E-value=4.9 Score=47.95 Aligned_cols=160 Identities=20% Similarity=0.213 Sum_probs=98.5
Q ss_pred hhhhhhHhhhhhHHhhHHHhhhhhhhhh----hhHHHHHHHHHHHHhHHHHHHHHHhHHH---HHHHHHhHHHhHhhhH-
Q 007114 343 RADGAEVRCKSLAETNIELNEDLKGSRA----TSEKVESLERQLRESDIQLQHAVAYAEA---SLEKQNMLYSTVKDME- 414 (617)
Q Consensus 343 ra~~aeskc~~LteTN~eL~~el~~Lk~----lsEKv~sLEkQLkEse~QL~~A~ASaea---~~eeqn~l~S~IsdME- 414 (617)
.-..---+|+.|++-|+|++.++.+--. +-.|++.+-+-+.+-+..-+.-..-... .-++--.|-+..-.|+
T Consensus 167 ~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp 246 (1265)
T KOG0976|consen 167 IGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTP 246 (1265)
T ss_pred HHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Confidence 3334456789999999999888765544 3334444433333322221111100000 0001011112222222
Q ss_pred --HHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHH
Q 007114 415 --NLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVM 492 (617)
Q Consensus 415 --nvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~ 492 (617)
...--+++.+-..+--|..-|.+--.|---|.-|..|++-..-+|..+..-|..+........-||.-.+|++.--+|
T Consensus 247 ~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enm 326 (1265)
T KOG0976|consen 247 LRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENM 326 (1265)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 122223333334444566677888888889999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHH
Q 007114 493 QMAVERERLR 502 (617)
Q Consensus 493 QLa~ErErL~ 502 (617)
+|..+.--|+
T Consensus 327 kltrqkadir 336 (1265)
T KOG0976|consen 327 KLTRQKADIR 336 (1265)
T ss_pred HHHHHHHHHH
Confidence 8877654443
No 61
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.01 E-value=5.6 Score=48.39 Aligned_cols=55 Identities=29% Similarity=0.283 Sum_probs=36.8
Q ss_pred hHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHH
Q 007114 433 SAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVI 487 (617)
Q Consensus 433 ~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i 487 (617)
..|.|...|...+.++.+.++.|+.+.+++-+.+..-+++|...-.+|..-.|-|
T Consensus 398 e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i 452 (1074)
T KOG0250|consen 398 ERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKI 452 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3345777777777777778888888777777777777777666544444333333
No 62
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.94 E-value=0.002 Score=73.03 Aligned_cols=62 Identities=29% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHH
Q 007114 403 QNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEA 464 (617)
Q Consensus 403 qn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~ 464 (617)
.+.+.+.|...+.-|.+|+.+......|++..+-++..|.+.+..|..|-..+......|+.
T Consensus 358 ~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e 419 (713)
T PF05622_consen 358 ARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRE 419 (713)
T ss_dssp --------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667778888889999988888889888888988888888777766655554444443
No 63
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.60 E-value=8.6 Score=47.49 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=15.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Q 007114 479 DIGIRTKVITNLVMQMAVERERL 501 (617)
Q Consensus 479 dI~~~tK~i~dLv~QLa~ErErL 501 (617)
+.....+...+=+.|+..|+.|+
T Consensus 671 ~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 671 KLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566777777777777777
No 64
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=95.53 E-value=4 Score=43.10 Aligned_cols=173 Identities=23% Similarity=0.336 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh---hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHH
Q 007114 331 ASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA---TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLY 407 (617)
Q Consensus 331 e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~---lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~ 407 (617)
+.+...|..-..+.+.--..+..+.+-|..|.+++..|-+ +++ ..+++.++--+.+.+.+.|--+.......+..
T Consensus 110 ~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE--~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~ 187 (309)
T PF09728_consen 110 EKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELRE--EHFEKLLKQKELEVQLAEAKLEQQQEEAEQEK 187 (309)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3334444445555566666777788889999998887776 322 23333443333333333333332222211111
Q ss_pred HhHhhhHH-HHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHH
Q 007114 408 STVKDMEN-LIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKV 486 (617)
Q Consensus 408 S~IsdMEn-vIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~ 486 (617)
........ ++++.. +|..+.++-.+|...|+.|-.|...++..|...+..=.+-=+++.--+|-
T Consensus 188 ~k~~~~~~~~l~~~~---------------~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk 252 (309)
T PF09728_consen 188 EKAKQEKEILLEEAA---------------QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKK 252 (309)
T ss_pred HHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 11111111 222222 89999999999999999999999999999997777766666677666666
Q ss_pred HHHH-----------------HHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 007114 487 ITNL-----------------VMQMAVERERLRQQISSLAMENKVMVVKLQ 520 (617)
Q Consensus 487 i~dL-----------------v~QLa~ErErL~~Qissl~~eNk~L~~k~k 520 (617)
|+.| +..++.||..+..++..+.+...-|-.=|+
T Consensus 253 ~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcR 303 (309)
T PF09728_consen 253 IKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCR 303 (309)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6654 456778888888888888777777766555
No 65
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.45 E-value=0.0039 Score=72.53 Aligned_cols=215 Identities=21% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHH
Q 007114 236 EKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSK 315 (617)
Q Consensus 236 EkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sK 315 (617)
|..|.+.+..-.+..-.++-+...+..|+....++...+-++++..-.|.-.-..+..-|..++-.|..-...=..|..+
T Consensus 186 E~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~ 265 (859)
T PF01576_consen 186 EAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQ 265 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHH
Confidence 44444555555555555555556666677777777777777777666665544445555554444443332222222222
Q ss_pred HHHHHH-------HHH------------------------------------HHHHHHHHHHHHHHHHHhhhhhhhHhhh
Q 007114 316 LDSLVK-------QVE------------------------------------VKESVIASLRENLSEAQARADGAEVRCK 352 (617)
Q Consensus 316 LkslEe-------qL~------------------------------------~len~~e~LKe~i~~AEsra~~aeskc~ 352 (617)
|..++. |+. .++..-..|-..+..++.....+..+|.
T Consensus 266 l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~ 345 (859)
T PF01576_consen 266 LRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVS 345 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322221 111 2333333444556677777778888888
Q ss_pred hhHHhhHHHhhhhhhhhh----hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhh
Q 007114 353 SLAETNIELNEDLKGSRA----TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKAD 428 (617)
Q Consensus 353 ~LteTN~eL~~el~~Lk~----lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAE 428 (617)
.|..+...|..++.-++. .+-.+..||+..+-++.++...++-.+....+.+.+....+.+++=|-.|+..+..+.
T Consensus 346 ~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~ 425 (859)
T PF01576_consen 346 SLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQ 425 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHH
Confidence 888888888888877776 4445557777777777777777666666666666666666666666666666555554
Q ss_pred hhhhhHHHHHhhHHHhhhhhHHHHHhhHh
Q 007114 429 SRADSAEEKLIILSEANAGLTEEISFLRD 457 (617)
Q Consensus 429 SRAe~AE~kc~~LtEtN~eLneEL~fLks 457 (617)
. .+..|...|-.|..||.-|.+
T Consensus 426 e-------~~e~lere~k~L~~El~dl~~ 447 (859)
T PF01576_consen 426 E-------QLEELERENKQLQDELEDLTS 447 (859)
T ss_dssp -----------------------------
T ss_pred H-------HHHHHHHHHHHHHHhhccchh
Confidence 3 333444445555555555544
No 66
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.41 E-value=3.4 Score=41.66 Aligned_cols=119 Identities=18% Similarity=0.233 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh----hhHHHHHHHHHHHHhH
Q 007114 311 GLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA----TSEKVESLERQLRESD 386 (617)
Q Consensus 311 el~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~----lsEKv~sLEkQLkEse 386 (617)
-|...|+.|-.-+..+|..+..|-.+-...|.-.+.-.++..-|.+-|.+|..+.+.|+. |..+-..|-.|+=+|+
T Consensus 64 ~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e 143 (193)
T PF14662_consen 64 ALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFE 143 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444555555556677777777778888888888888899999999999999999988 7677788899998999
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhh
Q 007114 387 IQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADS 429 (617)
Q Consensus 387 ~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAES 429 (617)
.-+-+-.+.+...--+.+.+...|-..-.++++|+.++++.|.
T Consensus 144 ~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEe 186 (193)
T PF14662_consen 144 SLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEE 186 (193)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877777777777777777777777888888888888774
No 67
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.37 E-value=9.4 Score=46.49 Aligned_cols=156 Identities=20% Similarity=0.207 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHhhhhhhhccccccchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccCCCCCCCCCC
Q 007114 117 LENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNWISDKDTG 196 (617)
Q Consensus 117 le~~~~tlq~~I~~~~~~i~s~~~~g~~f~~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~~~~~~~~~~~~~~ 196 (617)
|....+||+.+=.+.+.+..+-..+......=+..+.+++.-....++.++++.+-..+-++.++++-. |..++++
T Consensus 317 l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~-G~Ss~~~--- 392 (1174)
T KOG0933|consen 317 LNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTA-GLSSNED--- 392 (1174)
T ss_pred HHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccCcc---
Confidence 444445555544444444443333332333333334444444444566666666666666666666632 1111111
Q ss_pred CcccccccchhhhhhhccHHHHHHHHHHHHHHhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHh
Q 007114 197 SLEDDQFLNENAKIKLQTAEQQRHFLRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFE 276 (617)
Q Consensus 197 ~~ed~~~~~~~~~~~mqt~eQqR~iLrMLEkSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~E 276 (617)
.+....-.|+ +---.+++++--.+..++|+.+...|.+..|-.......+...
T Consensus 393 -------~e~~l~~ql~--------------------~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~ 445 (1174)
T KOG0933|consen 393 -------EEKTLEDQLR--------------------DAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVK 445 (1174)
T ss_pred -------chhhHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHH
Confidence 1111111111 1112455666667788899999999999999999999999999
Q ss_pred hcchHHHHhhhHHHHHHhHHHHhhhcc
Q 007114 277 AENSAEVLKGISKELLGRLQIVLFNMN 303 (617)
Q Consensus 277 AENa~EvL~g~skel~gkLq~~qf~L~ 303 (617)
-.+.+.++...-..+..+|+.+-|+-+
T Consensus 446 ~~~~ld~~q~eve~l~~~l~~l~~~~~ 472 (1174)
T KOG0933|consen 446 DIEELDALQNEVEKLKKRLQSLGYKIG 472 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 999999999999999999999888766
No 68
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.21 E-value=2.1 Score=41.01 Aligned_cols=83 Identities=25% Similarity=0.277 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHH
Q 007114 371 TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTE 450 (617)
Q Consensus 371 lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLne 450 (617)
+.++|-+||+.|..++.....+..-++..+.. |+.|+..++..-+.-...+....-|+..+-.|++
T Consensus 22 le~~v~~LEreLe~~q~~~e~~~~daEn~k~e--------------ie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k 87 (140)
T PF10473_consen 22 LEDHVESLERELEMSQENKECLILDAENSKAE--------------IETLEEELEELTSELNQLELELDTLRSEKENLDK 87 (140)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57799999999999999999999999998877 3344444444333344444578888899999999
Q ss_pred HHHhhHhHHHHHHHHHH
Q 007114 451 EISFLRDRLECLEASLH 467 (617)
Q Consensus 451 EL~fLksr~~~LE~~L~ 467 (617)
+|.-.++|+..||....
T Consensus 88 ~lq~~q~kv~eLE~~~~ 104 (140)
T PF10473_consen 88 ELQKKQEKVSELESLNS 104 (140)
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 99999999888887765
No 69
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.19 E-value=2.8 Score=43.29 Aligned_cols=132 Identities=25% Similarity=0.324 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhh--hhHHH
Q 007114 374 KVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANA--GLTEE 451 (617)
Q Consensus 374 Kv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~--eLneE 451 (617)
....|+-..++..--|..+++--++.......+..++.+|++-|-.+...+.++..|-..++.+...-|..+. .|+.|
T Consensus 18 e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E 97 (239)
T COG1579 18 EKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIE 97 (239)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 4456666666666667777777777777777777778888888888888888888888888888866665553 68999
Q ss_pred HHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 007114 452 ISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQI 505 (617)
Q Consensus 452 L~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qi 505 (617)
+..++.|..+|+..|..+......-.+.|..-..-+.++...++..+.++-.-+
T Consensus 98 ~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~ 151 (239)
T COG1579 98 IQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEV 151 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888888888888888888888888777765443
No 70
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=8.9 Score=45.03 Aligned_cols=230 Identities=21% Similarity=0.227 Sum_probs=147.7
Q ss_pred hcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHhhhhhhhHhhhhh
Q 007114 277 AENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKE-SVIASLR-ENLSEAQARADGAEVRCKSL 354 (617)
Q Consensus 277 AENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~le-n~~e~LK-e~i~~AEsra~~aeskc~~L 354 (617)
+.=..+.++|-+++..++|+ --.+.-++++..++..+. ....+++ .+...++.|+.+.....+-|
T Consensus 376 ~~~~le~~k~~~ke~~~~~~-------------~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~L 442 (698)
T KOG0978|consen 376 NELRLEMLKSLLKEQRDKLQ-------------VKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEEL 442 (698)
T ss_pred HHHHHHHHhCCCHHHHhHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHH
Confidence 44456778888888888887 111222235555555322 2233333 35556666666666666666
Q ss_pred HHhhHHHhhhhhhhhh-------hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhh
Q 007114 355 AETNIELNEDLKGSRA-------TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKA 427 (617)
Q Consensus 355 teTN~eL~~el~~Lk~-------lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskA 427 (617)
..++-..+.-++++.. .++...-|=.|+++.+-.--....+.....-.++.+..+..-|+..|-.|+..+...
T Consensus 443 qk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~ 522 (698)
T KOG0978|consen 443 QKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKL 522 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555555555544 444444444555555544444445555555577888999999999999999999999
Q ss_pred hhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHH-------HHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHH
Q 007114 428 DSRADSAEEKLIILSEANAGLTEEISFLRDRLE-------CLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERER 500 (617)
Q Consensus 428 ESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~-------~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErEr 500 (617)
+-+...-|.+...|+..=..|..|+..+...++ .+..+++.+.......-++ -+=|...+..+..|.+.
T Consensus 523 ~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~----le~i~~~~~e~~~ele~ 598 (698)
T KOG0978|consen 523 ELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAK----LEQIQEQYAELELELEI 598 (698)
T ss_pred HHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 999999999999999888888888877766433 3444444333333222211 12234455667788888
Q ss_pred HHHhhhhhhhhhHHHHHHhhhcc
Q 007114 501 LRQQISSLAMENKVMVVKLQQTK 523 (617)
Q Consensus 501 L~~Qissl~~eNk~L~~k~k~~~ 523 (617)
++.+.+-+=.|+..|..|+..+.
T Consensus 599 ~~~k~~rleEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 599 EKFKRKRLEEELERLKRKLERLK 621 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888888888988888543
No 71
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.15 E-value=4.2 Score=41.13 Aligned_cols=42 Identities=14% Similarity=0.257 Sum_probs=19.9
Q ss_pred HhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007114 298 VLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSE 339 (617)
Q Consensus 298 ~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~ 339 (617)
++....-+..++.+++.+...+...-..|..++..+...|..
T Consensus 14 ~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~ 55 (207)
T PF05010_consen 14 VQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQ 55 (207)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333333334444555555544444444555555555555443
No 72
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=95.10 E-value=4 Score=43.57 Aligned_cols=124 Identities=18% Similarity=0.188 Sum_probs=82.1
Q ss_pred HHHHHHHhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcc---------------------h
Q 007114 222 LRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAEN---------------------S 280 (617)
Q Consensus 222 LrMLEkSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAEN---------------------a 280 (617)
++=.++|-++.-|||-.|.-.+.-=--|+.||++ +...+-+.-+.++..+..|+. +
T Consensus 104 i~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~---d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~ 180 (305)
T PF14915_consen 104 IQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNS---DVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLA 180 (305)
T ss_pred HhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcc---hHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557899999999999988777633445555532 223333444444444444443 4
Q ss_pred HHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 007114 281 AEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAE 348 (617)
Q Consensus 281 ~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~ae 348 (617)
+|.+++++..++.++..++--...-.-.-+.-+.|-+|+|+-|-.+++.|-=|..++..|-.++.+-+
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~ke 248 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKE 248 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555444444445555566669999999999999999999999999988766
No 73
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.00 E-value=0.19 Score=57.39 Aligned_cols=34 Identities=35% Similarity=0.362 Sum_probs=22.8
Q ss_pred HHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHH
Q 007114 435 EEKLIILSEANAGLTEEISFLRDRLECLEASLHQ 468 (617)
Q Consensus 435 E~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~q 468 (617)
..+...|-..|..|..|+.-|+.+...||.+|..
T Consensus 502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 502 SEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667777777777777777777776653
No 74
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.93 E-value=12 Score=45.31 Aligned_cols=260 Identities=21% Similarity=0.221 Sum_probs=152.1
Q ss_pred HhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHh---hcchHHHHhhhHHHHHHhHHHHhhhccc
Q 007114 228 SLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFE---AENSAEVLKGISKELLGRLQIVLFNMNG 304 (617)
Q Consensus 228 SlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~E---AENa~EvL~g~skel~gkLq~~qf~L~a 304 (617)
-++.-.+|++.|.++|.--+++. ...++-+..|-+.+..+---.++ ||--++.|+.+..-+..|+..++.||-=
T Consensus 274 im~qqa~Lqrel~raR~e~keaq---e~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEI 350 (1243)
T KOG0971|consen 274 IMEQQADLQRELKRARKEAKEAQ---EAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEI 350 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566788888888776444432 22233333344444333222222 2333445555555555555555554421
Q ss_pred chhchhhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh----hh
Q 007114 305 SVQREAGLRSKLD--------SLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA----TS 372 (617)
Q Consensus 305 s~~REsel~sKLk--------slEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~----ls 372 (617)
|++..+ .--=|++.+|--|..||+.+.+-..-..+.--....|..-=-.++.|+++|+. |+
T Consensus 351 -------LKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Ls 423 (1243)
T KOG0971|consen 351 -------LKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLS 423 (1243)
T ss_pred -------HHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 000000 00012336677788999988865544444433344444444446677777777 88
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHh----HHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhh--
Q 007114 373 EKVESLERQLRESDIQLQHAVAYAEASLEKQNM----LYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANA-- 446 (617)
Q Consensus 373 EKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~----l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~-- 446 (617)
.++..+|-++.+.+.|.-.|-. ++++.+++-. +...|+-+|..|+||-. +|.--.+|-|.|-
T Consensus 424 r~~d~aEs~iadlkEQVDAAlG-AE~MV~qLtdknlnlEekVklLeetv~dlEa-----------lee~~EQL~Esn~el 491 (1243)
T KOG0971|consen 424 RELDQAESTIADLKEQVDAALG-AEEMVEQLTDKNLNLEEKVKLLEETVGDLEA-----------LEEMNEQLQESNREL 491 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc-HHHHHHHHHhhccCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 8999999999999999876654 5677766432 23334445555554432 4445556777775
Q ss_pred --hhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 007114 447 --GLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQ 520 (617)
Q Consensus 447 --eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L~~k~k 520 (617)
.|-+||.-+++-...|++....+ ..|+-|.....+-|.+||.+|- .||.-+++.|--..+..+
T Consensus 492 e~DLreEld~~~g~~kel~~r~~aa----qet~yDrdqTI~KfRelva~Lq-------dqlqe~~dq~~Sseees~ 556 (1243)
T KOG0971|consen 492 ELDLREELDMAKGARKELQKRVEAA----QETVYDRDQTIKKFRELVAHLQ-------DQLQELTDQQESSEEESQ 556 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHhhhhhhHHHhc
Confidence 46788899988777777776655 4688888888888999998865 445455544444444444
No 75
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.63 E-value=16 Score=45.32 Aligned_cols=236 Identities=21% Similarity=0.214 Sum_probs=125.4
Q ss_pred hhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhH----------HHHHHhHHHHhhhcc
Q 007114 234 DLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGIS----------KELLGRLQIVLFNMN 303 (617)
Q Consensus 234 dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~s----------kel~gkLq~~qf~L~ 303 (617)
+++..|.++.+....+...+..+....+.+|+.-.+..-.+-.+--+.....+-+ ..+..++..+|+...
T Consensus 519 ~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~ 598 (1317)
T KOG0612|consen 519 QLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKS 598 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHH
Confidence 4555556666666666666777777788888766655533332222222222222 245555555555544
Q ss_pred cchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh----hhHHHH---
Q 007114 304 GSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA----TSEKVE--- 376 (617)
Q Consensus 304 as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~----lsEKv~--- 376 (617)
..+.-+..+++-++..-.+.-..--++.+++..|. .|.+||..++.++.-+++ ..++.+
T Consensus 599 ~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~--------------sL~~~~~~~~~~l~k~~el~r~~~e~~~~~e 664 (1317)
T KOG0612|consen 599 KLSKENKKLRSELEKERRQRTEISEIIAELKEEIS--------------SLEETLKAGKKELLKVEELKRENQERISDSE 664 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--------------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44443333333332222222222222333333332 233333333332222222 111222
Q ss_pred ------HHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHh------
Q 007114 377 ------SLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEA------ 444 (617)
Q Consensus 377 ------sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEt------ 444 (617)
.+|.+++..+-++++..+....- ++-.-...+..|++-+.+=|+..-+|+..+--.+++|-.|.-.
T Consensus 665 k~~~e~~~e~~lk~~q~~~eq~~~E~~~~--~L~~~e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~ 742 (1317)
T KOG0612|consen 665 KEALEIKLERKLKMLQNELEQENAEHHRL--RLQDKEAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQE 742 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 34455566666666665554443 2222244577777777777888888998888899999888643
Q ss_pred -hhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhH
Q 007114 445 -NAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTK 485 (617)
Q Consensus 445 -N~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK 485 (617)
+-+|.....-+.+.+-.|+..|.|...+|-+.-+++..+.-
T Consensus 743 ~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~ 784 (1317)
T KOG0612|consen 743 KLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELKSQEQ 784 (1317)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHH
Confidence 33333444444456777888888888888777777665443
No 76
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.57 E-value=3.7 Score=37.93 Aligned_cols=76 Identities=20% Similarity=0.253 Sum_probs=59.9
Q ss_pred hhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 007114 445 NAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQ 520 (617)
Q Consensus 445 N~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L~~k~k 520 (617)
+.+..++|..+|..+..+...+.++.....+....+.....-...=-..|-.|..-+...|..|..-|++|-..+.
T Consensus 54 Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 54 HAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445677788888888888888877777777777777777777777788888888888888999999999877664
No 77
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.37 E-value=12 Score=42.84 Aligned_cols=299 Identities=19% Similarity=0.234 Sum_probs=158.8
Q ss_pred Hhhhhhhh---HHHhHHHHHHHHHHHHhhhhhhhccccccchhhHHHHHhhhh--------HHHHHHHHHHHHHHHHHhh
Q 007114 105 LLSGLLDS---ELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLD--------SEDSLQQSRDQILEIKKQS 173 (617)
Q Consensus 105 lL~gilDS---Ev~Ele~~~~tlq~~I~~~~~~i~s~~~~g~~f~~~~~KL~~--------~~~sLkQ~~e~i~eik~qs 173 (617)
.++-|.|| |=+||-.+=|-|-..|..+|..=....-|.-=.-.+++..+. ++..|-.....|.++-+.-
T Consensus 29 ~as~ir~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~r 108 (546)
T KOG0977|consen 29 AASPIRDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARER 108 (546)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHH
Confidence 34555555 666788888999999999987644333332222223333322 4556666777777777777
Q ss_pred HHHHHHHhhhhccCCCCCCCCCCCcccccccchhhhhhhccHHHHHHHHHHHHHHhhhhhhhHHHhHHHHHHHHHHHhhh
Q 007114 174 AKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLEKSLAREMDLEKKLTESRQVEEALKFRL 253 (617)
Q Consensus 174 a~fqr~~~~~~~~~~~~~~~~~~~~ed~~~~~~~~~~~mqt~eQqR~iLrMLEkSlA~e~dLEkkL~es~~~eeeLk~kL 253 (617)
++|+.-|..+ .++--..-.++++..-.-..-+.++.+....--++..++
T Consensus 109 a~~e~ei~kl-------------------------------~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~ 157 (546)
T KOG0977|consen 109 AKLEIEITKL-------------------------------REELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEI 157 (546)
T ss_pred HHHHHHHHHh-------------------------------HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHH
Confidence 7777777322 133334456677776666666666666666666777777
Q ss_pred hhhhHHHHhHHHHHHHHHH---HHHhhcchHHHHhhh-HHHH------HHhHHH----Hhhhcccc----------hhch
Q 007114 254 GSFEQELLYTEEEAMDACE---RLFEAENSAEVLKGI-SKEL------LGRLQI----VLFNMNGS----------VQRE 309 (617)
Q Consensus 254 ~~~eqe~~~lEE~~~~~~e---r~~EAENa~EvL~g~-skel------~gkLq~----~qf~L~as----------~~RE 309 (617)
+++.-....||+....+.. |+... +.-++.. =+++ +.+.|. +.|-...- ..|+
T Consensus 158 ~~~krr~~~le~e~~~Lk~en~rl~~~---l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd 234 (546)
T KOG0977|consen 158 NTLKRRIKALEDELKRLKAENSRLREE---LARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRD 234 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 7777777888877665532 22211 1111110 0111 111111 11111110 0111
Q ss_pred h------hHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh-
Q 007114 310 A------GLRSKLDSLVKQVE------------VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA- 370 (617)
Q Consensus 310 s------el~sKLkslEeqL~------------~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~- 370 (617)
. ..+.+|..+=..++ ++|..+ +.+|.++...+.-+-...-...|-=......++.|++
T Consensus 235 ~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y---~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~k 311 (546)
T KOG0977|consen 235 TTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWY---KRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAK 311 (546)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhh
Confidence 1 11111211111111 233222 2233333333322222222222222222333333333
Q ss_pred ---hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhh
Q 007114 371 ---TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAG 447 (617)
Q Consensus 371 ---lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~e 447 (617)
+..+-..|++++.+++.|+..- +..+...|.+-+.-|..+.+.+-..- .+.-.|=++++-
T Consensus 312 lselE~~n~~L~~~I~dL~~ql~e~----------~r~~e~~L~~kd~~i~~mReec~~l~-------~Elq~LlD~ki~ 374 (546)
T KOG0977|consen 312 LSELESRNSALEKRIEDLEYQLDED----------QRSFEQALNDKDAEIAKMREECQQLS-------VELQKLLDTKIS 374 (546)
T ss_pred hccccccChhHHHHHHHHHhhhhhh----------hhhhhhhhhhHHHHHHHHHHHHHHHH-------HHHHHhhchHhH
Confidence 3334557888888888887543 33444568888888888888666554 688889999999
Q ss_pred hHHHHHhhHh
Q 007114 448 LTEEISFLRD 457 (617)
Q Consensus 448 LneEL~fLks 457 (617)
|.-||+.||-
T Consensus 375 Ld~EI~~YRk 384 (546)
T KOG0977|consen 375 LDAEIAAYRK 384 (546)
T ss_pred HHhHHHHHHH
Confidence 9999999985
No 78
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.35 E-value=12 Score=42.66 Aligned_cols=66 Identities=18% Similarity=0.332 Sum_probs=32.7
Q ss_pred HHHhHHHhHhhhHHHHHHHHHhhhhhhh---------hhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHH
Q 007114 402 KQNMLYSTVKDMENLIQDLKLKVSKADS---------RADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLH 467 (617)
Q Consensus 402 eqn~l~S~IsdMEnvIEeLK~KvskAES---------RAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~ 467 (617)
....+...+..++.=+.++..++..+.+ +-+.++.++..+...--.+.+++..++.++..+++.+.
T Consensus 392 ~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (650)
T TIGR03185 392 AKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLD 466 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666665432 22333333333333333444444444445555555553
No 79
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=94.29 E-value=11 Score=42.03 Aligned_cols=192 Identities=19% Similarity=0.255 Sum_probs=101.7
Q ss_pred chhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHH-hhH-HHhh-----hhhhhhh----hhH
Q 007114 305 SVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAE-TNI-ELNE-----DLKGSRA----TSE 373 (617)
Q Consensus 305 s~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~Lte-TN~-eL~~-----el~~Lk~----lsE 373 (617)
.-++-.++...++.+--.++..+....+.|.. |---.+..+..+..|-+ +.. .++. |+++|+. +++
T Consensus 212 ~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~k---A~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~e 288 (511)
T PF09787_consen 212 YLRESGELQEQLELLKAEGESEEAELQQYKQK---AQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQE 288 (511)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHH
Confidence 33344455444443333333333333333211 33444555555555555 222 1221 3555554 788
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHH
Q 007114 374 KVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEIS 453 (617)
Q Consensus 374 Kv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~ 453 (617)
-+..|+.|+.....+++...+.... +...+...+.+++..+..+..+ |++|..+...=--+.+|+.
T Consensus 289 e~~~l~~Qi~~l~~e~~d~e~~~~~---~~~~~~~~~~~~~~~~~~~~~~-----------e~e~~l~~~el~~~~ee~~ 354 (511)
T PF09787_consen 289 EIQLLERQIEQLRAELQDLEAQLEG---EQESFREQPQELSQQLEPELTT-----------EAELRLYYQELYHYREELS 354 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHhch-----------HHHHHHHHHHHHHHHHHHH
Confidence 8999999999988888888776655 3345666677777777776665 3444444333333333443
Q ss_pred hhHh----HHHHHHHHHH---HHHHH--hhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 007114 454 FLRD----RLECLEASLH---QAEET--KLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQ 520 (617)
Q Consensus 454 fLks----r~~~LE~~L~---qa~~~--K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L~~k~k 520 (617)
..++ |+..-+..+. .+-.+ +.+.-.|+..+-+..++.+.|= |.++-+|+.+++-|.-.+.
T Consensus 355 ~~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li~K-------Q~~lE~l~~ek~al~lqlE 423 (511)
T PF09787_consen 355 RQKSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLIQK-------QTQLESLGSEKNALRLQLE 423 (511)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHHHH-------HHHHHHHHhhhhhccccHH
Confidence 3333 3333333222 22222 3456678777777766555432 5556666777776654443
No 80
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=94.26 E-value=8.6 Score=40.66 Aligned_cols=191 Identities=18% Similarity=0.187 Sum_probs=110.2
Q ss_pred HHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHH
Q 007114 281 AEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVE----VKESVIASLRENLSEAQARADGAEVRCKSLAE 356 (617)
Q Consensus 281 ~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~----~len~~e~LKe~i~~AEsra~~aeskc~~Lte 356 (617)
++-|.+.++.+..+++.--..=.....--..|+.||+++-+|.+ -++.++...--.+--++.|.+++......-.+
T Consensus 109 ~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~ 188 (309)
T PF09728_consen 109 SEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKE 188 (309)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44455555555555554333323333444578899998888877 44444444333444444444444444333333
Q ss_pred hhHHHhh----hhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhh
Q 007114 357 TNIELNE----DLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRAD 432 (617)
Q Consensus 357 TN~eL~~----el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe 432 (617)
-...++. +...+..+.+--..|..||.-|-..-..-..+.--+.+-...+..+|..|-.-|..|--.....-+|.+
T Consensus 189 k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e 268 (309)
T PF09728_consen 189 KAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWE 268 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333 111222233333444455554443333332332333333444555566777777777666777777778
Q ss_pred hHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHH
Q 007114 433 SAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEE 471 (617)
Q Consensus 433 ~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~ 471 (617)
.+-.-...+.+.+..+.+++..++.+...||+--++++.
T Consensus 269 ~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~ 307 (309)
T PF09728_consen 269 KSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQA 307 (309)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888899999999999999999999999999987766654
No 81
>PF13514 AAA_27: AAA domain
Probab=94.21 E-value=17 Score=43.96 Aligned_cols=62 Identities=24% Similarity=0.343 Sum_probs=32.3
Q ss_pred hHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 007114 448 LTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAME 511 (617)
Q Consensus 448 LneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~e 511 (617)
|..++..++.++..|+..+.++.......-..|..-.. .+-+..+..+++.+..+|..++++
T Consensus 894 l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~--~~~~a~l~~e~e~~~a~l~~~~~~ 955 (1111)
T PF13514_consen 894 LEAELEELEEELEELEEELEELQEERAELEQELEALEG--DDDAAELEQEREEAEAELEELAEE 955 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555665555544443333333322111 122345667777777777776654
No 82
>PLN02939 transferase, transferring glycosyl groups
Probab=94.21 E-value=14 Score=44.89 Aligned_cols=202 Identities=25% Similarity=0.290 Sum_probs=111.9
Q ss_pred HHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhh
Q 007114 281 AEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLD--------SLVKQVEVKESVIASLRENLSEAQA----RADGAE 348 (617)
Q Consensus 281 ~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLk--------slEeqL~~len~~e~LKe~i~~AEs----ra~~ae 348 (617)
++-++++-..++|++++++..|. |.+-+.|+- -+|+||+.+-+ .+..-.. -...-.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 225 (977)
T PLN02939 158 LEKILTEKEALQGKINILEMRLS-----ETDARIKLAAQEKIHVEILEEQLEKLRN-------ELLIRGATEGLCVHSLS 225 (977)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhh-----hhhhhhhhhhhccccchhhHHHHHHHhh-------hhhccccccccccccHH
Confidence 44455566678999999998876 445555553 45555553332 2221110 111124
Q ss_pred HhhhhhHHhhHHHhhhhhhhhh-------hhHHH-------HHHHHHHHHhHHHHHHHHHhHHH-HHHHHHhHHHhHhhh
Q 007114 349 VRCKSLAETNIELNEDLKGSRA-------TSEKV-------ESLERQLRESDIQLQHAVAYAEA-SLEKQNMLYSTVKDM 413 (617)
Q Consensus 349 skc~~LteTN~eL~~el~~Lk~-------lsEKv-------~sLEkQLkEse~QL~~A~ASaea-~~eeqn~l~S~IsdM 413 (617)
-++..|.+-|+-|+..+.+||. ..+.+ ..|+.-|++.+..+-.|.+-+-. .--+++.+..++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 302 (977)
T PLN02939 226 KELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKV--- 302 (977)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHH---
Confidence 5677788888888888888887 23333 34555677777766433322211 111222333333
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHH
Q 007114 414 ENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQ 493 (617)
Q Consensus 414 EnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~Q 493 (617)
|.|+.-+.+|-.+++.| +..-..|. -|+.|+..||.+|..++..|.++- .|.-|-++
T Consensus 303 ----~~~~~~~~~~~~~~~~~----~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 359 (977)
T PLN02939 303 ----ENLQDLLDRATNQVEKA----ALVLDQNQ-------DLRDKVDKLEASLKEANVSKFSSY--------KVELLQQK 359 (977)
T ss_pred ----HHHHHHHHHHHHHHHHH----HHHhccch-------HHHHHHHHHHHHHHHhhHhhhhHH--------HHHHHHHH
Confidence 44444444444333333 23333343 357899999999999999998654 34444466
Q ss_pred HHHHHHHH-------HHhhhhhhhhhHHHHHHhh
Q 007114 494 MAVERERL-------RQQISSLAMENKVMVVKLQ 520 (617)
Q Consensus 494 La~ErErL-------~~Qissl~~eNk~L~~k~k 520 (617)
+...++|| |.||.....+=..+..+++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (977)
T PLN02939 360 LKLLEERLQASDHEIHSYIQLYQESIKEFQDTLS 393 (977)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665 4555555555555555544
No 83
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.05 E-value=21 Score=44.42 Aligned_cols=125 Identities=14% Similarity=0.114 Sum_probs=62.3
Q ss_pred cHHHHHHHHHHHHHHhhhhhhhHHHhHHHHH---HHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHH
Q 007114 214 TAEQQRHFLRMLEKSLAREMDLEKKLTESRQ---VEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKE 290 (617)
Q Consensus 214 t~eQqR~iLrMLEkSlA~e~dLEkkL~es~~---~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~ske 290 (617)
|++|=-+.---+-.++|+=-+.+.=|+..+. .-+.|...-.........+...+++|-+-+-+|+-|-..-++..+.
T Consensus 1509 tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~ 1588 (1758)
T KOG0994|consen 1509 TPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQG 1588 (1758)
T ss_pred CHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555444444455555665566666655443 2333433333344444445555566666666666555544444444
Q ss_pred HHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007114 291 LLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLS 338 (617)
Q Consensus 291 l~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~ 338 (617)
...-++-+|..|--...+=.-...++.++-+||.+|+...+.||.++.
T Consensus 1589 a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~ 1636 (1758)
T KOG0994|consen 1589 ADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAA 1636 (1758)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433333333333222211122233444666666677777777776655
No 84
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.79 E-value=10 Score=39.85 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh
Q 007114 325 VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA 370 (617)
Q Consensus 325 ~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~ 370 (617)
.|.+-...+| ...+.++|+.==+=+.+++.+....|.+.+..|+.
T Consensus 119 ~m~~q~~~vK-~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~ 163 (325)
T PF08317_consen 119 LMDNQFQLVK-TYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQE 163 (325)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555444 34677888888888888888888888887777777
No 85
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=93.66 E-value=23 Score=43.50 Aligned_cols=50 Identities=26% Similarity=0.375 Sum_probs=31.6
Q ss_pred HHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhh
Q 007114 406 LYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFL 455 (617)
Q Consensus 406 l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fL 455 (617)
+...+......|+.++..+..++...++++.+...|...--.+..++.-.
T Consensus 626 ~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 675 (1201)
T PF12128_consen 626 LEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEA 675 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666777777777777777777777766665555444444433
No 86
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=93.61 E-value=23 Score=43.39 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=28.0
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhh--hhHHHHH
Q 007114 478 KDIGIRTKVITNLVMQMAVERERLRQQISSLAM--ENKVMVV 517 (617)
Q Consensus 478 kdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~--eNk~L~~ 517 (617)
+-.+-+--.+..++--|-.|+.-|.+||++|+. .|.++-+
T Consensus 526 e~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LE 567 (1195)
T KOG4643|consen 526 ELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLE 567 (1195)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 334444556677777778888889999999988 6655543
No 87
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.58 E-value=15 Score=41.18 Aligned_cols=213 Identities=23% Similarity=0.261 Sum_probs=113.8
Q ss_pred hccHHHHHHHHHHHHHHhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHH
Q 007114 212 LQTAEQQRHFLRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKEL 291 (617)
Q Consensus 212 mqt~eQqR~iLrMLEkSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel 291 (617)
.+..+++.+|+. ++. ..-..+++.|..+....+.|+..+-. +.++=.++..+-.....|++.++..
T Consensus 196 ~eAeee~~~~~~--~~~-~~~~~~~~~leeae~~l~~L~~e~~~-----------~k~Le~kL~~a~~~l~~Lq~El~~~ 261 (522)
T PF05701_consen 196 IEAEEERIEIAA--ERE-QDAEEWEKELEEAEEELEELKEELEA-----------AKDLESKLAEASAELESLQAELEAA 261 (522)
T ss_pred HHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666653 332 34446788888888888888777633 3333334445555556666665555
Q ss_pred HH-hHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh
Q 007114 292 LG-RLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA 370 (617)
Q Consensus 292 ~g-kLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~ 370 (617)
.. ++.... ........+...|.++...|..+...+...++.+.. |..+.--|+.+|...|.
T Consensus 262 ~~~~l~~~~----~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~--------------L~~~vesL~~ELe~~K~ 323 (522)
T PF05701_consen 262 KESKLEEEA----EAKEKSSELQSSLASAKKELEEAKKELEKAKEEASS--------------LRASVESLRSELEKEKE 323 (522)
T ss_pred HHHHHhhhH----HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Confidence 44 322222 233344444555555555555444444433333332 22222223333322222
Q ss_pred -----------hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHh
Q 007114 371 -----------TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLI 439 (617)
Q Consensus 371 -----------lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~ 439 (617)
..-.|.+|+.+|......|..+.+.....+ ..+.+|-..+..+..-. +.|-..-.
T Consensus 324 el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k-------~~~~~l~~~Lqql~~Ea-------e~Ak~ea~ 389 (522)
T PF05701_consen 324 ELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAK-------EAMSELPKALQQLSSEA-------EEAKKEAE 389 (522)
T ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchh-------hhHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 444566666666666666665555443322 23455555555544433 34444555
Q ss_pred hHHHhhhhhHHHHHhhHhHHHHHHHHHHHHH
Q 007114 440 ILSEANAGLTEEISFLRDRLECLEASLHQAE 470 (617)
Q Consensus 440 ~LtEtN~eLneEL~fLksr~~~LE~~L~qa~ 470 (617)
.......++..|+...|..+...|.+|..+.
T Consensus 390 ~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ 420 (522)
T PF05701_consen 390 EAKEEVEKAKEEAEQTKAAIKTAEERLEAAL 420 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667788888888888888888887443
No 88
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.58 E-value=5.7 Score=46.44 Aligned_cols=135 Identities=21% Similarity=0.262 Sum_probs=104.7
Q ss_pred hhhhhhccHHHHHHHHH--HHH-HHhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHH
Q 007114 207 NAKIKLQTAEQQRHFLR--MLE-KSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEV 283 (617)
Q Consensus 207 ~~~~~mqt~eQqR~iLr--MLE-kSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~Ev 283 (617)
+..-..|.--|--.+|| -++ .-+|+ -.+++...-....-+.--.+|....+++..+.+.++.+-+|+=+|..--+.
T Consensus 533 ~~~E~l~lL~~a~~vlreeYi~~~~~ar-~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~ 611 (717)
T PF10168_consen 533 SPQECLELLSQATKVLREEYIEKQDLAR-EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEK 611 (717)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555556666 223 33343 357777777777777777789999999999999999999999999999999
Q ss_pred HhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007114 284 LKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARAD 345 (617)
Q Consensus 284 L~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~ 345 (617)
|+--.+.++.+++ ..+.....-|.+.+..|+.+..+|+.|.+-++.+|.++...+.+.+
T Consensus 612 L~~R~~~vl~~l~---~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 612 LMKRVDRVLQLLN---SQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9888888877774 4566677789999999999999999999999999988876555444
No 89
>PRK09039 hypothetical protein; Validated
Probab=93.30 E-value=6.2 Score=42.07 Aligned_cols=12 Identities=17% Similarity=0.312 Sum_probs=7.3
Q ss_pred hHHHHHhhHhHH
Q 007114 448 LTEEISFLRDRL 459 (617)
Q Consensus 448 LneEL~fLksr~ 459 (617)
-..||.-||+.+
T Consensus 188 ~~~~l~~~~~~~ 199 (343)
T PRK09039 188 RVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHhHHHH
Confidence 355667777654
No 90
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.23 E-value=17 Score=40.71 Aligned_cols=169 Identities=24% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh------------------------
Q 007114 315 KLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA------------------------ 370 (617)
Q Consensus 315 KLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~------------------------ 370 (617)
+++|+=++-..++.-+..++.++.+-..++.-.+.+.++|.+-|-||+..+..+.-
T Consensus 139 q~eslle~~~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l 218 (446)
T KOG4438|consen 139 QLESLLELRKQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKIL 218 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Q ss_pred --hhHHHHHHHHHHH------------------HhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhh
Q 007114 371 --TSEKVESLERQLR------------------ESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSR 430 (617)
Q Consensus 371 --lsEKv~sLEkQLk------------------Ese~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESR 430 (617)
+.--|-+|++-.. +....++.-+......++++..+..++..|..++.|++.-.-++.+-
T Consensus 219 ~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~ 298 (446)
T KOG4438|consen 219 NALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKISSD 298 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHh
Q ss_pred h---hhHHHHHhhHHHhhhhhHHHHHhhHh------HHHHHHHHHHHHHHHhhhhhHhhhhhh
Q 007114 431 A---DSAEEKLIILSEANAGLTEEISFLRD------RLECLEASLHQAEETKLATAKDIGIRT 484 (617)
Q Consensus 431 A---e~AE~kc~~LtEtN~eLneEL~fLks------r~~~LE~~L~qa~~~K~stakdI~~~t 484 (617)
- ++.|.+...|.+ |++|+.-+-...+ ..+.+-++|.-+..+|.++..|...++
T Consensus 299 ~~e~d~~Et~~v~lke-~~~Le~q~e~~~~e~~~lk~~e~~~kqL~~~~kek~~~~Qd~~~r~ 360 (446)
T KOG4438|consen 299 GVEYDSLETKVVELKE-ILELEDQIELNQLELEKLKMFENLTKQLNELKKEKESRRQDLENRK 360 (446)
T ss_pred hhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 91
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.99 E-value=11 Score=37.70 Aligned_cols=132 Identities=19% Similarity=0.273 Sum_probs=89.1
Q ss_pred ccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh----hhHHH
Q 007114 303 NGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSE---AQARADGAEVRCKSLAETNIELNEDLKGSRA----TSEKV 375 (617)
Q Consensus 303 ~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~---AEsra~~aeskc~~LteTN~eL~~el~~Lk~----lsEKv 375 (617)
+|-..+=.+|+..+..+...+.++.+.|.-||.--.+ |=.+.+++++...+|. ..-++++..|+. ..++.
T Consensus 8 Sar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll---~~h~eEvr~Lr~~LR~~q~~~ 84 (194)
T PF15619_consen 8 SARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLL---QRHNEEVRVLRERLRKSQEQE 84 (194)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3444444566777777777777777777777766554 5566677777777664 334566666666 67788
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHH
Q 007114 376 ESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSE 443 (617)
Q Consensus 376 ~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtE 443 (617)
..+++.+++.+.++..........+. ++.-+++.. .++|..+++.++.+++.++.+...|..
T Consensus 85 r~~~~klk~~~~el~k~~~~l~~L~~-----L~~dknL~e-ReeL~~kL~~~~~~l~~~~~ki~~Lek 146 (194)
T PF15619_consen 85 RELERKLKDKDEELLKTKDELKHLKK-----LSEDKNLAE-REELQRKLSQLEQKLQEKEKKIQELEK 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHcCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888876666554331 233445555 577888888888877777777666543
No 92
>PRK09039 hypothetical protein; Validated
Probab=92.73 E-value=16 Score=39.06 Aligned_cols=61 Identities=25% Similarity=0.285 Sum_probs=42.9
Q ss_pred hhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 007114 446 AGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQIS 506 (617)
Q Consensus 446 ~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qis 506 (617)
.-|+.+|..||..+..||..|..++......-..|..-..-|.....+-.-|-+++.+++.
T Consensus 140 ~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~ 200 (343)
T PRK09039 140 ELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEFF 200 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3578899999999999999998777776555555555555555555555556677777663
No 93
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=92.73 E-value=20 Score=40.25 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhh---cccchhchhh
Q 007114 266 EAMDACERLFEAENSAEVLKGISKELLGRLQIVLFN---MNGSVQREAG 311 (617)
Q Consensus 266 ~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~---L~as~~REse 311 (617)
....+|.+|-++....+-+....+....+++..+|. |.....+++|
T Consensus 162 ~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E 210 (563)
T TIGR00634 162 AYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGE 210 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCc
Confidence 345667888888888888888878888888887776 4444444443
No 94
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=92.69 E-value=26 Score=41.43 Aligned_cols=337 Identities=17% Similarity=0.233 Sum_probs=179.3
Q ss_pred HHhhhhhhhHHHhHHHHHHHHHHHHhhhhhhhccccccchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 007114 104 DLLSGLLDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSAL 183 (617)
Q Consensus 104 DlL~gilDSEv~Ele~~~~tlq~~I~~~~~~i~s~~~~g~~f~~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~ 183 (617)
.=||--|.-++.|-.+++ ......||+ |--+-+.|.+-.+|+.-++.--...++.+.++-. +.+|.|-+|
T Consensus 130 E~lSlKLee~i~en~dL~----k~nnaTR~l---CNlLKeT~~rsaEK~~~yE~EREET~qly~~l~~---niekMi~aF 199 (786)
T PF05483_consen 130 EKLSLKLEEEIQENKDLR----KENNATRHL---CNLLKETCQRSAEKMKKYEYEREETRQLYMDLNE---NIEKMIAAF 199 (786)
T ss_pred hHHhHHHHHHHhhHHHHH----HhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHH
Confidence 345555555555544433 345556775 8888889999999999888776666666655432 233333332
Q ss_pred hccCCCCCCCCCCCcccccccchhhhhhhccHHHHHHH--HHHHHHHhhhhh-hhHH-------HhHHHHHHHHHHHhhh
Q 007114 184 DREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHF--LRMLEKSLAREM-DLEK-------KLTESRQVEEALKFRL 253 (617)
Q Consensus 184 ~~~~~~~~~~~~~~~ed~~~~~~~~~~~mqt~eQqR~i--LrMLEkSlA~e~-dLEk-------kL~es~~~eeeLk~kL 253 (617)
.. -.. .+ ++ .+.-||- .=++.. +.=||.-.-.|+ |-|+ ++.+-.....+|...|
T Consensus 200 Ee---LR~-qA----En-------~r~EM~f-KlKE~~~k~~~leeey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l 263 (786)
T PF05483_consen 200 EE---LRV-QA----EN-------DRQEMHF-KLKEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLL 263 (786)
T ss_pred HH---HHH-HH----Hh-------HHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 10 000 00 11 1111210 000111 122333333332 2233 3333334556677777
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhh-------hcccchhchhhHHHHHH-HHHHHHH-
Q 007114 254 GSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLF-------NMNGSVQREAGLRSKLD-SLVKQVE- 324 (617)
Q Consensus 254 ~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf-------~L~as~~REsel~sKLk-slEeqL~- 324 (617)
.-+..-...|||...--.+-+-++----+.|.-.+..+---||.... +|......=-.+...-+ .+|++=+
T Consensus 264 ~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~ 343 (786)
T PF05483_consen 264 QESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKA 343 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 77777777788877777666665544444444444433333332221 11111110000000000 2222111
Q ss_pred ---------HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh-------------------------
Q 007114 325 ---------VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA------------------------- 370 (617)
Q Consensus 325 ---------~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~------------------------- 370 (617)
+|+..+-+|++-+.--.-|+...+...+.|+ ++|..+-.+|..
T Consensus 344 k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~---~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~qkl 420 (786)
T PF05483_consen 344 KAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILT---MELQKKSSELEEMTKQKNNKEVELEELKKILAEKQKL 420 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 7777788888777766666666666555442 223222222221
Q ss_pred --------------------hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHh-------------------------
Q 007114 371 --------------------TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNM------------------------- 405 (617)
Q Consensus 371 --------------------lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~------------------------- 405 (617)
+...+...|+.+.+.+.||..+..+-..+-.+...
T Consensus 421 l~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslE 500 (786)
T PF05483_consen 421 LDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLE 500 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456667777777777777666654433333222
Q ss_pred ---HHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHh----HHHHHHHHHHHH
Q 007114 406 ---LYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRD----RLECLEASLHQA 469 (617)
Q Consensus 406 ---l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLks----r~~~LE~~L~qa 469 (617)
+.-+.++|-.=+..+++.+.....+++..-....-|-++|..|..||.++|- +-..++.+|..-
T Consensus 501 kk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ks 571 (786)
T PF05483_consen 501 KKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKS 571 (786)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 2222445555556667777777778888888888999999999999999987 455677777643
No 95
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=92.61 E-value=27 Score=41.41 Aligned_cols=26 Identities=35% Similarity=0.558 Sum_probs=16.2
Q ss_pred hhhhhHHHhHHHHHHHHHHHHhhhhh
Q 007114 108 GLLDSELRELENFITTLEADFVKAHE 133 (617)
Q Consensus 108 gilDSEv~Ele~~~~tlq~~I~~~~~ 133 (617)
.+.-.+.+++...+..++..+.+-..
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~L~~ 295 (908)
T COG0419 270 KIREEELRELERLLEELEEKIERLEE 295 (908)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777766666655444
No 96
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.56 E-value=25 Score=40.82 Aligned_cols=84 Identities=25% Similarity=0.318 Sum_probs=46.5
Q ss_pred HHHHHhhHHHhhhhhHHHHHhhHhHH--HHHHH-HH-HHHHHHhhhhhHhhhhhh---HHHHHHHHHHHHHHHHHHHhhh
Q 007114 434 AEEKLIILSEANAGLTEEISFLRDRL--ECLEA-SL-HQAEETKLATAKDIGIRT---KVITNLVMQMAVERERLRQQIS 506 (617)
Q Consensus 434 AE~kc~~LtEtN~eLneEL~fLksr~--~~LE~-~L-~qa~~~K~stakdI~~~t---K~i~dLv~QLa~ErErL~~Qis 506 (617)
+......++..|-+|...|+.+..-. ..++. .. ..+.....+..+|+..+- .++...+.++-.||.||..|+-
T Consensus 291 ~qe~Lea~~qqNqqL~~qls~~~~~~eg~~~~~~~~~ee~~~~~~~ipEd~es~E~m~~f~~~a~~~~eeEr~~L~~qL~ 370 (617)
T PF15070_consen 291 AQEHLEALSQQNQQLQAQLSLMALPGEGDGLESESEEEEAPQPMPSIPEDLESREAMVEFFNSALAQAEEERARLRRQLE 370 (617)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhcCCCCCcccccccccccccCcCcccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34455566666666666666543311 11110 00 022333445556665553 4578889999999999999986
Q ss_pred hhhhhhHHHHH
Q 007114 507 SLAMENKVMVV 517 (617)
Q Consensus 507 sl~~eNk~L~~ 517 (617)
..-....-|..
T Consensus 371 eqk~~~q~L~h 381 (617)
T PF15070_consen 371 EQKVQCQHLAH 381 (617)
T ss_pred HHHHHHHHhhh
Confidence 54333333333
No 97
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.54 E-value=27 Score=41.21 Aligned_cols=66 Identities=18% Similarity=0.139 Sum_probs=42.9
Q ss_pred HHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHh
Q 007114 282 EVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAET 357 (617)
Q Consensus 282 EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteT 357 (617)
+-+.|-.+.++..+...+++.++--.+|.+++. +++.-+.+++.-+.++.+++....-+|+.....
T Consensus 115 ~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~----------e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~ 180 (716)
T KOG4593|consen 115 EALKGQEEKLQEQLERNRNQCQANLKKELELLR----------EKEDKLAELGTLRNKLDSSLSELQWEVMLQEMR 180 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888888888888888887777766654 334444444444555555555555666655443
No 98
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.49 E-value=12 Score=42.13 Aligned_cols=116 Identities=18% Similarity=0.197 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHH
Q 007114 318 SLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAE 397 (617)
Q Consensus 318 slEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASae 397 (617)
.++.++.-|+.-+.+|-++-.-|+.|...--.++.+| ..++..||+|+|+.+..+..+.+.-+
T Consensus 219 di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqL-----------------vhR~h~LEEq~reqElraeE~l~Ee~ 281 (502)
T KOG0982|consen 219 DIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQL-----------------VHRYHMLEEQRREQELRAEESLSEEE 281 (502)
T ss_pred hHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHH-----------------HHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3444444555555555555555555555555555555 67999999999999999999888777
Q ss_pred HHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHH
Q 007114 398 ASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASL 466 (617)
Q Consensus 398 a~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L 466 (617)
-++.+ |.-.+++..-.| -++-+.+.-+|.+.|-+|-..++-||+-+..|..-.
T Consensus 282 rrhrE--------------il~k~eReasle--~Enlqmr~qqleeentelRs~~arlksl~dklaee~ 334 (502)
T KOG0982|consen 282 RRHRE--------------ILIKKEREASLE--KENLQMRDQQLEEENTELRSLIARLKSLADKLAEED 334 (502)
T ss_pred HHHHH--------------HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 77665 222233222222 244455666777777777777777777544444433
No 99
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.46 E-value=13 Score=42.65 Aligned_cols=49 Identities=16% Similarity=0.157 Sum_probs=41.1
Q ss_pred cchhhHH--HHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccCCC
Q 007114 141 LGKASIE--MEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNW 189 (617)
Q Consensus 141 ~g~~f~~--~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~~~~~~~ 189 (617)
+.++|+. ++.|...+.....-+.+|+.++|.+...=++.+..|+...+.
T Consensus 176 la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l 226 (754)
T TIGR01005 176 IAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDL 226 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4466776 678888888999999999999999999999999999875443
No 100
>PRK10698 phage shock protein PspA; Provisional
Probab=91.64 E-value=16 Score=36.79 Aligned_cols=150 Identities=15% Similarity=0.151 Sum_probs=64.7
Q ss_pred HHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhh----
Q 007114 282 EVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLD--------------SLVKQVEVKESVIASLRENLSEAQAR---- 343 (617)
Q Consensus 282 EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLk--------------slEeqL~~len~~e~LKe~i~~AEsr---- 343 (617)
-|++|..+.+++|.+-=+--|+ +=-.++.+-|. .++.++...+..+.+...+...|=.+
T Consensus 9 ~ii~a~in~~ldkaEDP~k~l~---q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~Ed 85 (222)
T PRK10698 9 DIVNANINALLEKAEDPQKLVR---LMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKED 85 (222)
T ss_pred HHHHhHHHHHHHhhcCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 5788888888887763321111 11122222222 33444444444444444333333221
Q ss_pred -hhhhhHhhhhhHHhhHHHhhhhhhhhh----hhHHHHHHHHHHHHhHHHHHHHHHhHHH--HHHHHHhHHHhHhh--hH
Q 007114 344 -ADGAEVRCKSLAETNIELNEDLKGSRA----TSEKVESLERQLRESDIQLQHAVAYAEA--SLEKQNMLYSTVKD--ME 414 (617)
Q Consensus 344 -a~~aeskc~~LteTN~eL~~el~~Lk~----lsEKv~sLEkQLkEse~QL~~A~ASaea--~~eeqn~l~S~Isd--ME 414 (617)
|..|-.+-+...+.-..|..++..... +...+..|+.++.+...+...-+|-..+ .+.+.+...+.+.. -=
T Consensus 86 LAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~ 165 (222)
T PRK10698 86 LARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAM 165 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHH
Confidence 111222222333444444444444444 4445555555555555442222222111 11122222222111 11
Q ss_pred HHHHHHHHhhhhhhhhhhhH
Q 007114 415 NLIQDLKLKVSKADSRADSA 434 (617)
Q Consensus 415 nvIEeLK~KvskAESRAe~A 434 (617)
.-.+.+.+||...|.+|+..
T Consensus 166 ~~f~rmE~ki~~~Ea~aea~ 185 (222)
T PRK10698 166 ARFESFERRIDQMEAEAESH 185 (222)
T ss_pred HHHHHHHHHHHHHHHHHhHh
Confidence 23455777888888777654
No 101
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=91.36 E-value=1.6 Score=41.74 Aligned_cols=72 Identities=25% Similarity=0.285 Sum_probs=65.6
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHH---HHHHHHHHHHhhhhhhhhhHHHHHHhhhc
Q 007114 451 EISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQ---MAVERERLRQQISSLAMENKVMVVKLQQT 522 (617)
Q Consensus 451 EL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~Q---La~ErErL~~Qissl~~eNk~L~~k~k~~ 522 (617)
+-++|++++.+||+.|...+..+.....|-...++.|..|-.+ ++.+|.+|+..+.++.+++..|...|+.-
T Consensus 18 e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~ 92 (140)
T PF10473_consen 18 EKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKK 92 (140)
T ss_pred hHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999888766 57799999999999999999999999854
No 102
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=91.33 E-value=41 Score=40.76 Aligned_cols=331 Identities=21% Similarity=0.270 Sum_probs=164.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccCCCCCCCCCCCcccccccchhhhhhhccHHHHHHHHHHHH
Q 007114 147 EMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLE 226 (617)
Q Consensus 147 ~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~~~~~~~~~~~~~~~~ed~~~~~~~~~~~mqt~eQqR~iLrMLE 226 (617)
.+|+-|..-+..+.-+|-...+.-+|..++|-||.++.. . ...... .+.+.++ =|.-||
T Consensus 96 llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~--d-~ke~et------elE~~~s------------rlh~le 154 (1265)
T KOG0976|consen 96 LLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQD--D-KKENEI------EIENLNS------------RLHKLE 154 (1265)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHH------HHHhhHH------------HHHHHH
Confidence 345555555555555666666677788888888876631 0 000000 0011111 133333
Q ss_pred HHhhhhh--------hhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhc-----------chHHHHhhh
Q 007114 227 KSLAREM--------DLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAE-----------NSAEVLKGI 287 (617)
Q Consensus 227 kSlA~e~--------dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAE-----------Na~EvL~g~ 287 (617)
+-|.-.. ||-.+-......+.++..++.-...++..+|+-.+..-+-+-+.+ |.-+||.-.
T Consensus 155 ~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev 234 (1265)
T KOG0976|consen 155 DELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEV 234 (1265)
T ss_pred HHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 3332111 344445555666777777777777778888777776655555444 333333211
Q ss_pred HHHHHHhHHHH-------------hhhcccchh----chhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhh
Q 007114 288 SKELLGRLQIV-------------LFNMNGSVQ----REAGLRSKLDSLVKQVEVKESVI-------ASLRENLSEAQAR 343 (617)
Q Consensus 288 skel~gkLq~~-------------qf~L~as~~----REsel~sKLkslEeqL~~len~~-------e~LKe~i~~AEsr 343 (617)
..|-.++|.+ --+|.++.. .+++++.|-.-|...|-..+-.+ +.+|....+|--+
T Consensus 235 -~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gd 313 (1265)
T KOG0976|consen 235 -MQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGD 313 (1265)
T ss_pred -HHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1122222222 222222221 12222222222333332444444 4444444444444
Q ss_pred hhhhhHhhhhhHHhhHHHhhhhhhhhh-----------hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhh
Q 007114 344 ADGAEVRCKSLAETNIELNEDLKGSRA-----------TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKD 412 (617)
Q Consensus 344 a~~aeskc~~LteTN~eL~~el~~Lk~-----------lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~Isd 412 (617)
..+| -+-|...|++|+.++.-++- +.+|.+.||++-.....-.+.-..--+.-.+++--|.+....
T Consensus 314 seqa---tkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~ae 390 (1265)
T KOG0976|consen 314 SEQA---TKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAE 390 (1265)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 34566778888877765554 777888888775554433322222223333334445555555
Q ss_pred hHHHHHHHHHhhhhhhhh----------hhhHHHHHhhHHH-------------------------hhhhhHHHHHhhHh
Q 007114 413 MENLIQDLKLKVSKADSR----------ADSAEEKLIILSE-------------------------ANAGLTEEISFLRD 457 (617)
Q Consensus 413 MEnvIEeLK~KvskAESR----------Ae~AE~kc~~LtE-------------------------tN~eLneEL~fLks 457 (617)
.+.-|++||+++...|-- .+.|+.|.-.|-- +=.+-|+=+.|+++
T Consensus 391 rqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~ 470 (1265)
T KOG0976|consen 391 RQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRA 470 (1265)
T ss_pred HHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHH
Confidence 666666666666555432 2233333322211 11223444566666
Q ss_pred HHHHHHHHHH---HHHHHhhhh---hHhhhhhhHHHHHHHHHHHHHHHHHH
Q 007114 458 RLECLEASLH---QAEETKLAT---AKDIGIRTKVITNLVMQMAVERERLR 502 (617)
Q Consensus 458 r~~~LE~~L~---qa~~~K~st---akdI~~~tK~i~dLv~QLa~ErErL~ 502 (617)
.+.+||++-+ +.+..|++- +|-|..-+..|-..---+-.||++|-
T Consensus 471 l~~sle~qrKVeqe~emlKaen~rqakkiefmkEeiQethldyR~els~lA 521 (1265)
T KOG0976|consen 471 LMDSLEKQRKVEQEYEMLKAENERQAKKIEFMKEEIQETHLDYRSELSELA 521 (1265)
T ss_pred HhhChhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777776654 555555543 45566666666666666666776663
No 103
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=91.14 E-value=40 Score=40.26 Aligned_cols=102 Identities=25% Similarity=0.272 Sum_probs=52.8
Q ss_pred HHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHH
Q 007114 282 EVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIEL 361 (617)
Q Consensus 282 EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL 361 (617)
+.-.+...++..+|+.++..-.-..-.=....++++.+.-||++++..+.+|+-++.-+......+++..+-..+.+-.|
T Consensus 585 ea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~l 664 (769)
T PF05911_consen 585 EADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESL 664 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555544333333333344455555555555555555665555555555555555555555555555
Q ss_pred hhhhhh----hhhhhHHHHHHHHHHH
Q 007114 362 NEDLKG----SRATSEKVESLERQLR 383 (617)
Q Consensus 362 ~~el~~----Lk~lsEKv~sLEkQLk 383 (617)
...+.. ++.+..|+++||.+|.
T Consensus 665 e~~~~~~e~E~~~l~~Ki~~Le~Ele 690 (769)
T PF05911_consen 665 ETRLKDLEAEAEELQSKISSLEEELE 690 (769)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444432 2235666666666653
No 104
>PRK11281 hypothetical protein; Provisional
Probab=91.07 E-value=48 Score=41.08 Aligned_cols=147 Identities=16% Similarity=0.160 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhh---hhh-----hhHHHHHHHHHHHHhHHHH
Q 007114 318 SLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKG---SRA-----TSEKVESLERQLRESDIQL 389 (617)
Q Consensus 318 slEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~---Lk~-----lsEKv~sLEkQLkEse~QL 389 (617)
..+++|.+..+....+...-.+|+++...+-.+ +.+.+.+|+.--.. |.. ++-....++-|..-.+..+
T Consensus 139 ~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~R---lqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l 215 (1113)
T PRK11281 139 NAQNDLAEYNSQLVSLQTQPERAQAALYANSQR---LQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSL 215 (1113)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH---HHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444455454444443 33334455432111 111 4445556666655555556
Q ss_pred HHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhh-----hhhhhhhHHH-H----------HhhHHHhhhhhHHHHH
Q 007114 390 QHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSK-----ADSRADSAEE-K----------LIILSEANAGLTEEIS 453 (617)
Q Consensus 390 ~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~Kvsk-----AESRAe~AE~-k----------c~~LtEtN~eLneEL~ 453 (617)
..+..-.+-.+.+++-+...+...|.-|..|++.+.. +|.+++.|+. + ...+.+.|.+|.++|.
T Consensus 216 ~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~~~a~~~~~~~~~~~~p~i~~~~~~N~~Ls~~L~ 295 (1113)
T PRK11281 216 EGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLL 295 (1113)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 6666666666667777777777777777777777665 3333333321 1 3346688999999999
Q ss_pred hhHhHHHHHHHHHH
Q 007114 454 FLRDRLECLEASLH 467 (617)
Q Consensus 454 fLksr~~~LE~~L~ 467 (617)
..-.|++.|-.+-.
T Consensus 296 ~~t~~~~~l~~~~~ 309 (1113)
T PRK11281 296 KATEKLNTLTQQNL 309 (1113)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877765553
No 105
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=90.86 E-value=42 Score=40.02 Aligned_cols=148 Identities=22% Similarity=0.260 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHH--------H
Q 007114 310 AGLRSKLDSLVKQVE----VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVE--------S 377 (617)
Q Consensus 310 sel~sKLkslEeqL~----~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~--------s 377 (617)
+|||.+|.-.|.++. -|...|.+|-..+..||.|++.. .+++-+|--=|=..|..|+..-.|.. +
T Consensus 590 ~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel---~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~ 666 (961)
T KOG4673|consen 590 EDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEEL---IQQVPETTRPLLRQIEALQETLSKAATAWEREERS 666 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 345555544555544 45556666655555555443322 22333455556667777777322322 2
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHh--HhhhHHHHHHHHHhhhhhhhhh-----hhHHHHHhhHHHhhhhhHH
Q 007114 378 LERQLRESDIQLQHAVAYAEASLEKQNMLYST--VKDMENLIQDLKLKVSKADSRA-----DSAEEKLIILSEANAGLTE 450 (617)
Q Consensus 378 LEkQLkEse~QL~~A~ASaea~~eeqn~l~S~--IsdMEnvIEeLK~KvskAESRA-----e~AE~kc~~LtEtN~eLne 450 (617)
|=..|-+|+.++..++... .-+.|+.|... |..|+ ++..+.+||.-+ +.+--+...+-..|.-+.+
T Consensus 667 l~~rL~dSQtllr~~v~~e--qgekqElL~~~~~l~s~~-----~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qe 739 (961)
T KOG4673|consen 667 LNERLSDSQTLLRINVLEE--QGEKQELLSLNFSLPSSP-----IQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQE 739 (961)
T ss_pred HHHhhhhHHHHHHHHHHHH--hhhHHHHHHHhcCCCcch-----hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 2233445555555555444 33444444333 33332 344455554321 1122233344455667777
Q ss_pred HHHhhHhHHHHHHHHHH
Q 007114 451 EISFLRDRLECLEASLH 467 (617)
Q Consensus 451 EL~fLksr~~~LE~~L~ 467 (617)
|+..|++|+..||...+
T Consensus 740 E~~~l~~r~~~le~e~r 756 (961)
T KOG4673|consen 740 EADTLEGRANQLEVEIR 756 (961)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777765443
No 106
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=90.85 E-value=42 Score=40.06 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=17.8
Q ss_pred HHhhhhhhhHHHhHHHHHHHHHHHhhhhhhhH
Q 007114 227 KSLAREMDLEKKLTESRQVEEALKFRLGSFEQ 258 (617)
Q Consensus 227 kSlA~e~dLEkkL~es~~~eeeLk~kL~~~eq 258 (617)
+++-.-++-.+.+...+.+.++++.-+++...
T Consensus 441 qsv~k~v~~q~~~s~i~~ILedI~~al~~~~~ 472 (769)
T PF05911_consen 441 QSVLKLVLEQKEVSKISEILEDIEIALDSINN 472 (769)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcc
Confidence 34444455555555555666666666655544
No 107
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=90.83 E-value=8.4 Score=39.15 Aligned_cols=40 Identities=23% Similarity=0.342 Sum_probs=34.8
Q ss_pred hhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 007114 476 TAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVM 515 (617)
Q Consensus 476 takdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L 515 (617)
...+++.-..-++-|...|+.||++...|..++-.|...-
T Consensus 129 ~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W 168 (202)
T PF06818_consen 129 GEDELGSLRREVERLRAELQRERQRREEQRSSFEQERRTW 168 (202)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3557888888999999999999999999999998887764
No 108
>PLN02939 transferase, transferring glycosyl groups
Probab=90.81 E-value=15 Score=44.71 Aligned_cols=13 Identities=23% Similarity=0.371 Sum_probs=8.2
Q ss_pred hHhHHHHHHHHHH
Q 007114 455 LRDRLECLEASLH 467 (617)
Q Consensus 455 Lksr~~~LE~~L~ 467 (617)
+=.|++.|+.-|.
T Consensus 298 ~~~~~~~~~~~~~ 310 (977)
T PLN02939 298 WWEKVENLQDLLD 310 (977)
T ss_pred HHHHHHHHHHHHH
Confidence 4456777776665
No 109
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=90.58 E-value=33 Score=38.39 Aligned_cols=146 Identities=22% Similarity=0.200 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHH
Q 007114 310 AGLRSKLDSLVKQVE-VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQ 388 (617)
Q Consensus 310 sel~sKLkslEeqL~-~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~Q 388 (617)
..|.+||..++..++ .-+ +....+...-.|....+.....|.+....+..-+..++ +...+..+++-...-
T Consensus 158 ~sL~ekl~lld~al~~~~~----~~~~~~~~fl~rtl~~e~~~~~L~~~~~A~~~~~~~l~----~~~e~~~~l~l~~~~ 229 (511)
T PF09787_consen 158 RSLQEKLSLLDEALKREDG----NAITAVVEFLKRTLKKEIERQELEERPKALRHYIEYLR----ESGELQEQLELLKAE 229 (511)
T ss_pred hhHHHHHHHHHHHHHhcCc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 556666665555555 111 11222233333444444455555555444433333333 344555666666666
Q ss_pred HHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHH
Q 007114 389 LQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASL 466 (617)
Q Consensus 389 L~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L 466 (617)
++++.+.-..|+.+ ..-.+.+=|..|..||.+...-..-...+-.++..|....--+.+|+..|+..+..|...+
T Consensus 230 ~~~~~~el~~Yk~k---A~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~ 304 (511)
T PF09787_consen 230 GESEEAELQQYKQK---AQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAEL 304 (511)
T ss_pred hHHHHHHHHHHHHH---HHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666643 3455778899999999966552221111112333344444444444444444443333333
No 110
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=90.36 E-value=26 Score=36.84 Aligned_cols=141 Identities=18% Similarity=0.194 Sum_probs=80.8
Q ss_pred hhhHhhhhhHHhhHHHhhhhhhhhh-hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhh
Q 007114 346 GAEVRCKSLAETNIELNEDLKGSRA-TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKV 424 (617)
Q Consensus 346 ~aeskc~~LteTN~eL~~el~~Lk~-lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~Kv 424 (617)
.....|..|+.+|-+|..+|....+ .-.||..|=.| |+. ...|.+.-+... =+.|+....+|.+-=
T Consensus 10 el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqq---y~~-~~~~i~~le~~~---------~~~l~~ak~eLqe~e 76 (258)
T PF15397_consen 10 ELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQ---YDI-YRTAIDILEYSN---------HKQLQQAKAELQEWE 76 (258)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHH---HHH-HHHHHHHHHccC---------hHHHHHHHHHHHHHH
Confidence 4456788899999999998888877 44466544222 222 233333332211 123344444444444
Q ss_pred hhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHh--------HHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHH
Q 007114 425 SKADSRADSAEEKLIILSEANAGLTEEISFLRD--------RLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAV 496 (617)
Q Consensus 425 skAESRAe~AE~kc~~LtEtN~eLneEL~fLks--------r~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ 496 (617)
.+++++...-+.+...|.---.+.++||+||.. |+-...+-.+++...|.+-..+++--...+.-....|..
T Consensus 77 ek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~ 156 (258)
T PF15397_consen 77 EKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASLSR 156 (258)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555566788888877 555555556677777777777776665555554444444
Q ss_pred HHH
Q 007114 497 ERE 499 (617)
Q Consensus 497 ErE 499 (617)
-.+
T Consensus 157 ~~q 159 (258)
T PF15397_consen 157 KIQ 159 (258)
T ss_pred HHH
Confidence 433
No 111
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=90.19 E-value=47 Score=39.51 Aligned_cols=48 Identities=25% Similarity=0.234 Sum_probs=21.3
Q ss_pred HHHHHHHHhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHH
Q 007114 221 FLRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAM 268 (617)
Q Consensus 221 iLrMLEkSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~ 268 (617)
+-..+++-..+-..+...+.+..+...++...+...+.+...+++...
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~ 434 (908)
T COG0419 387 LEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIK 434 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444333
No 112
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.02 E-value=16 Score=33.82 Aligned_cols=60 Identities=30% Similarity=0.302 Sum_probs=35.2
Q ss_pred hhhhHHHHHhhHhHHHHHHHHHH----HHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 007114 445 NAGLTEEISFLRDRLECLEASLH----QAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSL 508 (617)
Q Consensus 445 N~eLneEL~fLksr~~~LE~~L~----qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl 508 (617)
.-.+..+++.|+..+......|. ..+..|..--++|.--.+-|.||..|=.. ||.||-++
T Consensus 68 ~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~l----Lh~QlE~l 131 (132)
T PF07926_consen 68 LQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKL----LHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhc
Confidence 33444455555555555544444 33455666667777777777777766544 77777654
No 113
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.62 E-value=11 Score=37.63 Aligned_cols=104 Identities=22% Similarity=0.327 Sum_probs=69.6
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHH
Q 007114 415 NLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQM 494 (617)
Q Consensus 415 nvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QL 494 (617)
.+|..||+.+.....+.+..+.....+...|-.|.+-|.-++-.+..|++.|......|.+ -..+-.+-+..++=+..|
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~-L~~~k~rl~~~ek~l~~L 105 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQS-LQNLKARLKELEKELKDL 105 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3588888888888888888888999999999999999999999999999999877666663 222223333333333344
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHh
Q 007114 495 AVERERLRQQISSLAMENKVMVVKL 519 (617)
Q Consensus 495 a~ErErL~~Qissl~~eNk~L~~k~ 519 (617)
-.|-+-|..++..+-.+..-|-.++
T Consensus 106 k~e~evL~qr~~kle~ErdeL~~kf 130 (201)
T PF13851_consen 106 KWEHEVLEQRFEKLEQERDELYRKF 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444333
No 114
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.53 E-value=4.2 Score=40.87 Aligned_cols=77 Identities=17% Similarity=0.252 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHH
Q 007114 371 TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTE 450 (617)
Q Consensus 371 lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLne 450 (617)
..+++..||+|+.+...++.++..+.... ..+++.++..++ .....|.+.|.+|++
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~~~-----------------~~~l~~~~~~~~-------~~~~~L~~~n~~L~~ 146 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWNQR-----------------TAEMQQKVAQSD-------SVINGLKEENQKLKN 146 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH-----------------HHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 67888999999999998888877554432 334444444433 234448899999999
Q ss_pred HHHhhHhHHHHHHHHHHHHHH
Q 007114 451 EISFLRDRLECLEASLHQAEE 471 (617)
Q Consensus 451 EL~fLksr~~~LE~~L~qa~~ 471 (617)
+|..++.++..|+.++.....
T Consensus 147 ~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 147 QLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988876554
No 115
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=89.36 E-value=4.9 Score=39.14 Aligned_cols=83 Identities=24% Similarity=0.364 Sum_probs=50.8
Q ss_pred HhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHH
Q 007114 410 VKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITN 489 (617)
Q Consensus 410 IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~d 489 (617)
+.....-|.+|+..+...+.+...-+........+|.-|+.|+..|.-.++.+|.++..++.+-. .+|.-
T Consensus 111 ~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~----------~Lv~R 180 (194)
T PF08614_consen 111 LSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENR----------ELVER 180 (194)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH
Confidence 33333334444444444444444444577777888888888998888888888888887766543 45555
Q ss_pred HHHHHHHHHHHHH
Q 007114 490 LVMQMAVERERLR 502 (617)
Q Consensus 490 Lv~QLa~ErErL~ 502 (617)
++..-+.|-++++
T Consensus 181 wm~~k~~eAe~mN 193 (194)
T PF08614_consen 181 WMQRKAQEAERMN 193 (194)
T ss_dssp HHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhc
Confidence 6666666666553
No 116
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=89.30 E-value=29 Score=37.75 Aligned_cols=18 Identities=11% Similarity=0.228 Sum_probs=11.2
Q ss_pred HhhhhhhHHHHHHHHHHH
Q 007114 478 KDIGIRTKVITNLVMQMA 495 (617)
Q Consensus 478 kdI~~~tK~i~dLv~QLa 495 (617)
.|.....+....++.++.
T Consensus 362 Re~~~~~~~Y~~l~~r~e 379 (498)
T TIGR03007 362 RDYEVNKSNYEQLLTRRE 379 (498)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455556667777776653
No 117
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=89.09 E-value=26 Score=34.95 Aligned_cols=117 Identities=16% Similarity=0.210 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhhhHhhhhhHHhhHHHhhhhhhhhh----hhHHHHHHHHHHHHhHHH
Q 007114 318 SLVKQVEVKESVIASLRENLSEAQAR-----ADGAEVRCKSLAETNIELNEDLKGSRA----TSEKVESLERQLRESDIQ 388 (617)
Q Consensus 318 slEeqL~~len~~e~LKe~i~~AEsr-----a~~aeskc~~LteTN~eL~~el~~Lk~----lsEKv~sLEkQLkEse~Q 388 (617)
.++.++...+..+.++......|=.+ |-.|-.+-....++-..|...+..++. +..++..|+.++.+....
T Consensus 56 ~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k 135 (219)
T TIGR02977 56 ELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARAR 135 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544444222 223333444455555556666655555 555666666666666555
Q ss_pred HHHHHHhHHHHHHH----HHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhH
Q 007114 389 LQHAVAYAEASLEK----QNMLYSTVKDMENLIQDLKLKVSKADSRADSA 434 (617)
Q Consensus 389 L~~A~ASaea~~ee----qn~l~S~IsdMEnvIEeLK~KvskAESRAe~A 434 (617)
...-+|-...-+.+ ..+.-....+--.-++.+++++..-|.+++..
T Consensus 136 ~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ea~aea~ 185 (219)
T TIGR02977 136 QKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDELEAQAESY 185 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 33222211111111 11111123333445566778888888777654
No 118
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.08 E-value=33 Score=36.24 Aligned_cols=187 Identities=18% Similarity=0.233 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh-hhHHHHHHHHHHHHhHHHHHHH
Q 007114 314 SKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA-TSEKVESLERQLRESDIQLQHA 392 (617)
Q Consensus 314 sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~-lsEKv~sLEkQLkEse~QL~~A 392 (617)
+++..+.+.+..+++-+++|-.+|....++.+....++.++..-=-+|+.+|..++. ..++=..|.+|+|-...
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~----- 112 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV----- 112 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 455567777777777777777777777777777777777765555566677777666 55566666666664322
Q ss_pred HHhHHHHHHHHHhHHHh--HhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHH
Q 007114 393 VAYAEASLEKQNMLYST--VKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAE 470 (617)
Q Consensus 393 ~ASaea~~eeqn~l~S~--IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~ 470 (617)
.++..-..+++... ++||=+=+.-++.=|.-=-.=.++-...-..|.+.-..|++++..|..=...||.++.+++
T Consensus 113 ---nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~ 189 (265)
T COG3883 113 ---NGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLN 189 (265)
T ss_pred ---cCChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233443322 3333222111111111000111122234455667777788888888887788888877766
Q ss_pred HHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 007114 471 ETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQ 520 (617)
Q Consensus 471 ~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L~~k~k 520 (617)
..|.+ -.+|+.+++.+-...+.-...|. +=+-+++...
T Consensus 190 ~qk~e-----------~~~l~~~~aa~~a~~~~e~a~l~-~qka~a~a~a 227 (265)
T COG3883 190 SQKAE-----------KNALIAALAAKEASALGEKAALE-EQKALAEAAA 227 (265)
T ss_pred HHHHH-----------HHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHH
Confidence 65543 46778888887777777777776 4444444444
No 119
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.79 E-value=64 Score=39.10 Aligned_cols=125 Identities=14% Similarity=0.243 Sum_probs=83.7
Q ss_pred hhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhh
Q 007114 367 GSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANA 446 (617)
Q Consensus 367 ~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~ 446 (617)
+|+.|++|++.|+..|-+....+..++-..+....+-+...++|+.+-.-|.+++.|+.+.=---+.-..+++..--+|.
T Consensus 445 eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~ 524 (1118)
T KOG1029|consen 445 ELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHK 524 (1118)
T ss_pred HHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhcc
Confidence 44559999999999999999999999999888888888888889999888999888776653322223333333322232
Q ss_pred hhHH---HHHhhHhH----HHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHH
Q 007114 447 GLTE---EISFLRDR----LECLEASLHQAEETKLATAKDIGIRTKVITNLV 491 (617)
Q Consensus 447 eLne---EL~fLksr----~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv 491 (617)
.=+. +|...+-+ -.-|+.+|..+.-++.+.-.||.+-+.-++.|.
T Consensus 525 ~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk 576 (1118)
T KOG1029|consen 525 ETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELK 576 (1118)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 2222 22222111 234556666777788888888887666555553
No 120
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=88.64 E-value=4 Score=39.74 Aligned_cols=87 Identities=23% Similarity=0.206 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHH
Q 007114 371 TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTE 450 (617)
Q Consensus 371 lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLne 450 (617)
++.++..++..+.+-...+....+.....+.+...+...|..+...|+.|++-+.-.--....+|.++..|...|-+|-+
T Consensus 100 ~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 100 LNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777777777777777777777777777777888888888888888877777778888888888888888877
Q ss_pred HHHhhHh
Q 007114 451 EISFLRD 457 (617)
Q Consensus 451 EL~fLks 457 (617)
-+=-.+.
T Consensus 180 Rwm~~k~ 186 (194)
T PF08614_consen 180 RWMQRKA 186 (194)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6554444
No 121
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.61 E-value=14 Score=41.72 Aligned_cols=94 Identities=23% Similarity=0.241 Sum_probs=66.2
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhH
Q 007114 377 SLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLR 456 (617)
Q Consensus 377 sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLk 456 (617)
.||+|-..++..++.+++... .+..+.+.-.-+|+..-.++.|+-+-. .+...+.|-|..|.+.+...+
T Consensus 348 qlen~k~~~e~~~~e~~~l~~----~~~~~e~~kk~~e~k~~q~q~k~~k~~-------kel~~~~E~n~~l~knq~vw~ 416 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQ----ESSDLEAEKKIVERKLQQLQTKLKKCQ-------KELKEEREENKKLIKNQDVWR 416 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHH
Confidence 455555555555555554333 344555666666666667777776665 477777899999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHhhh
Q 007114 457 DRLECLEASLHQAEETKLATAKDIG 481 (617)
Q Consensus 457 sr~~~LE~~L~qa~~~K~stakdI~ 481 (617)
+++..+|.++..+..+|.....||.
T Consensus 417 ~kl~~~~e~~~~~~~s~d~~I~dLq 441 (493)
T KOG0804|consen 417 GKLKELEEREKEALGSKDEKITDLQ 441 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888777666654
No 122
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=88.06 E-value=85 Score=39.67 Aligned_cols=112 Identities=17% Similarity=0.095 Sum_probs=74.5
Q ss_pred hhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhH
Q 007114 233 MDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGL 312 (617)
Q Consensus 233 ~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel 312 (617)
+-..+++++..+. .-.||......++.+....+=.+ -+ ..-.+.-...++.+++....-++.-.-.+|..+
T Consensus 934 ~~aqk~~~~ine~----~s~l~~~~~~~~~~~~~~~~~~~----~~-~l~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l 1004 (1294)
T KOG0962|consen 934 KLAQKKRNDINEK----VSLLHQIYKLNECFEQYGFDDLR----IA-QLSESEEHLEERDNEVNEIKQKIRNQYQRERNL 1004 (1294)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHhhhhhc----hH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3334444444333 33455555555555554444333 11 122233345566777777777788888999999
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhh
Q 007114 313 RSKLD--SLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSL 354 (617)
Q Consensus 313 ~sKLk--slEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~L 354 (617)
++.|. -++.|++.++.....+-.++.++. ++.+++....+.
T Consensus 1005 ~dnl~~~~l~~q~~e~~re~~~ld~Qi~~~~-~~~~~ee~~~L~ 1047 (1294)
T KOG0962|consen 1005 KDNLTLRNLERKLKELERELSELDKQILEAD-IKSVKEERVKLE 1047 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHH
Confidence 99887 899999999999999999999999 888877766554
No 123
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.83 E-value=62 Score=37.86 Aligned_cols=232 Identities=20% Similarity=0.229 Sum_probs=135.7
Q ss_pred hhHHHHHHhHHHHhhhc------------ccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhh
Q 007114 286 GISKELLGRLQIVLFNM------------NGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKS 353 (617)
Q Consensus 286 g~skel~gkLq~~qf~L------------~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~ 353 (617)
...++..|..++.+--- +.|.-+|...--|.-.+|..|+.+.++....+....+-++..+-----..-
T Consensus 67 dqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~ 146 (772)
T KOG0999|consen 67 DQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAA 146 (772)
T ss_pred HHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 55677777777665443 344444444444444555555544444444433333332222211111112
Q ss_pred hHHhhHHHhhhhhhhhh-----hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhh
Q 007114 354 LAETNIELNEDLKGSRA-----TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKAD 428 (617)
Q Consensus 354 LteTN~eL~~el~~Lk~-----lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAE 428 (617)
+..--..|+.+|.++|- +++.- .|.|-++-||.-+++--.+|++++-+.-+|+-+|.-|+=|+..+-.|.
T Consensus 147 ~E~qR~rlr~elKe~KfRE~RllseYS-----ELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~ 221 (772)
T KOG0999|consen 147 VEDQRRRLRDELKEYKFREARLLSEYS-----ELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAI 221 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333456666666665 44432 234456778888999999999999999999999999999999999988
Q ss_pred hhhhhHHHHHhhH-------HHhhhhhHHHHHhhHhHH-----H----HHHHHHHHHHHHhhhhhH-hhhhhhHHHHHHH
Q 007114 429 SRADSAEEKLIIL-------SEANAGLTEEISFLRDRL-----E----CLEASLHQAEETKLATAK-DIGIRTKVITNLV 491 (617)
Q Consensus 429 SRAe~AE~kc~~L-------tEtN~eLneEL~fLksr~-----~----~LE~~L~qa~~~K~stak-dI~~~tK~i~dLv 491 (617)
.--+.||.+...= -+...-|..||+-++++= + +|+.++..=...--..++ +-|.-+|+--|+.
T Consensus 222 ~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q~~n~e~~~~~n~l~~sldgk~~eDga~pn~d~e~eh~~l~kl~~Dl~ 301 (772)
T KOG0999|consen 222 RLKEIAEKQLEEALETLQQEREQKNALKKELSQYRNAEDISSLNHLLFSLDGKFGEDGAEPNNDPEEEHGALKKLASDLF 301 (772)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcchhhhhhhhhhheecccccccccCCCCCChhhhcchhhhccchhh
Confidence 7777777654321 233456778888887741 1 333333210000000111 1122222222222
Q ss_pred ------------HHHHHHHHHHHHhhhhhhhhhHHHHHHhhhc
Q 007114 492 ------------MQMAVERERLRQQISSLAMENKVMVVKLQQT 522 (617)
Q Consensus 492 ------------~QLa~ErErL~~Qissl~~eNk~L~~k~k~~ 522 (617)
--+-.|.++|++|+-+.-++.-.|...++.+
T Consensus 302 tel~~p~sDl~sel~iseiqkLkqqL~smErek~~l~anL~dt 344 (772)
T KOG0999|consen 302 TELQGPVSDLFSELNISEIQKLKQQLMSMEREKAELLANLQDT 344 (772)
T ss_pred hhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 2345789999999999999999999999864
No 124
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=87.73 E-value=34 Score=34.72 Aligned_cols=110 Identities=17% Similarity=0.143 Sum_probs=75.7
Q ss_pred hhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHH
Q 007114 234 DLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLR 313 (617)
Q Consensus 234 dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~ 313 (617)
.+|+.+....+-.+.|..+...+-.-...+...++....|-..-.-.++-+.....+++.++...-- ++....-.++.
T Consensus 49 ~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~--~~~~~~~~~l~ 126 (264)
T PF06008_consen 49 PLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE--NGDQLPSEDLQ 126 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--ccCCCCHHHHH
Confidence 4556666666666777777777777777777888888877766666666666666677776665443 66667889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 007114 314 SKLDSLVKQVEVKESVIASLRENLSEAQARADGA 347 (617)
Q Consensus 314 sKLkslEeqL~~len~~e~LKe~i~~AEsra~~a 347 (617)
.+|+.++.-|+.|.... +...-..|+.-...|
T Consensus 127 ~~l~ea~~mL~emr~r~--f~~~~~~Ae~El~~A 158 (264)
T PF06008_consen 127 RALAEAQRMLEEMRKRD--FTPQRQNAEDELKEA 158 (264)
T ss_pred HHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHH
Confidence 99999999998887663 444444444433333
No 125
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=87.62 E-value=84 Score=39.12 Aligned_cols=150 Identities=13% Similarity=0.158 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----------hhHhhhhhHHhhHHHhhhhhh---hhh-----hhHHHHHH
Q 007114 318 SLVKQVEVKESVIASLRENLSEAQARADG-----------AEVRCKSLAETNIELNEDLKG---SRA-----TSEKVESL 378 (617)
Q Consensus 318 slEeqL~~len~~e~LKe~i~~AEsra~~-----------aeskc~~LteTN~eL~~el~~---Lk~-----lsEKv~sL 378 (617)
.||.++..-.+-..+++++...+.+|... ...--+.|.+.|.+|+..... +.. +.-....+
T Consensus 106 ~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l 185 (1109)
T PRK10929 106 ALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAAL 185 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHH
Confidence 44444444444444555555544444422 122224455555555442211 111 33344556
Q ss_pred HHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhh-----hhhhhhhHHH---H-------HhhHHH
Q 007114 379 ERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSK-----ADSRADSAEE---K-------LIILSE 443 (617)
Q Consensus 379 EkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~Kvsk-----AESRAe~AE~---k-------c~~LtE 443 (617)
+-|+...+.-+..+..-.+-.+.+++.+.-++..++.-|+.|++.+.. +|..++.|+. + ...+.+
T Consensus 186 ~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~~~i~~~~~ 265 (1109)
T PRK10929 186 KALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLPKSIVAQFK 265 (1109)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCChHHHHHHH
Confidence 666666665555555555555666666666677777777777766654 3333333332 1 234457
Q ss_pred hhhhhHHHHHhhHhHHHHHHHHHH
Q 007114 444 ANAGLTEEISFLRDRLECLEASLH 467 (617)
Q Consensus 444 tN~eLneEL~fLksr~~~LE~~L~ 467 (617)
.|.+|.++|...-.|++.|-.+-.
T Consensus 266 ~N~~Ls~~L~~~t~~~n~l~~~~~ 289 (1109)
T PRK10929 266 INRELSQALNQQAQRMDLIASQQR 289 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999988888777755443
No 126
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=87.54 E-value=0.26 Score=56.36 Aligned_cols=150 Identities=23% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHH----HHHHHHHHHhHH-HH
Q 007114 318 SLVKQVE---VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKV----ESLERQLRESDI-QL 389 (617)
Q Consensus 318 slEeqL~---~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv----~sLEkQLkEse~-QL 389 (617)
.||++|+ .+...++.+|..|.+-+.+......+...|..-|.+|.+++..|..-.+++ ..|...+.+..+ +.
T Consensus 350 ~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL~~~~~ 429 (713)
T PF05622_consen 350 MLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETNEELECSQA 429 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 6666666 455555556666665555555555555555555555555555544422222 222222222211 11
Q ss_pred HH---------HHHhHHHHHHHHH--hHHHhHhhhHHHHHHHHHhh--------hhhhhhhhhHHHHHhhHHHhhhhhHH
Q 007114 390 QH---------AVAYAEASLEKQN--MLYSTVKDMENLIQDLKLKV--------SKADSRADSAEEKLIILSEANAGLTE 450 (617)
Q Consensus 390 ~~---------A~ASaea~~eeqn--~l~S~IsdMEnvIEeLK~Kv--------skAESRAe~AE~kc~~LtEtN~eLne 450 (617)
.. ...+.+..-.++. .+...|..++.=.+-|+.++ ....+..+.|...+..|...|...++
T Consensus 430 ~~~~l~~~~~~~~~~~~~l~~El~~~~l~erl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~ 509 (713)
T PF05622_consen 430 QQEQLSQSGEESSSSGDNLSAELNPAELRERLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREANE 509 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccchhhhccchHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 0111111111111 23344555555455554333 33345556666777778777888888
Q ss_pred HHHhhHhHHHHHHHHHH
Q 007114 451 EISFLRDRLECLEASLH 467 (617)
Q Consensus 451 EL~fLksr~~~LE~~L~ 467 (617)
.+..|++.++.|.+.|.
T Consensus 510 ~~~~lq~qle~lq~~l~ 526 (713)
T PF05622_consen 510 KILELQSQLEELQKSLQ 526 (713)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888887777765
No 127
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.38 E-value=86 Score=38.97 Aligned_cols=135 Identities=20% Similarity=0.233 Sum_probs=69.4
Q ss_pred hHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHH
Q 007114 280 SAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRE---------------------NLS 338 (617)
Q Consensus 280 a~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe---------------------~i~ 338 (617)
...-|++.=.-+...|..++. ... +.+++.+|+..||.++.-+..-.+.+|. .|+
T Consensus 653 ~~~~L~~~k~rl~eel~ei~~---~~~-e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~ 728 (1141)
T KOG0018|consen 653 EVDQLKEKKERLLEELKEIQK---RRK-EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEIS 728 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---hhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHH
Confidence 344555555555555555555 222 6677777777777766644444444444 444
Q ss_pred HHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh-------------------------hhHHHHHHHHHHHHhHHHHHHHH
Q 007114 339 EAQARADGAEVRCKSLAETNIELNEDLKGSRA-------------------------TSEKVESLERQLRESDIQLQHAV 393 (617)
Q Consensus 339 ~AEsra~~aeskc~~LteTN~eL~~el~~Lk~-------------------------lsEKv~sLEkQLkEse~QL~~A~ 393 (617)
.-+-+.++.|...+.| .+.++.+.+ -..|.-.+|+|+.-.+.|+.--+
T Consensus 729 ~i~r~l~~~e~~~~~L-------~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~ 801 (1141)
T KOG0018|consen 729 EIKRKLQNREGEMKEL-------EERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEK 801 (1141)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhee
Confidence 3333444444443333 223333322 23345555666655555555444
Q ss_pred HhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhh
Q 007114 394 AYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKA 427 (617)
Q Consensus 394 ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskA 427 (617)
. ..-+...++....+++.+.-++.++.+...+
T Consensus 802 ~--~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~ 833 (1141)
T KOG0018|consen 802 Q--KDTQRRVERWERSVEDLEKEIEGLKKDEEAA 833 (1141)
T ss_pred c--ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Confidence 4 2233445566666777777777666644444
No 128
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=87.25 E-value=41 Score=40.19 Aligned_cols=87 Identities=26% Similarity=0.283 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh-------hhHHHHHHHHHHHHhHHHHHHHHHhHH
Q 007114 325 VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA-------TSEKVESLERQLRESDIQLQHAVAYAE 397 (617)
Q Consensus 325 ~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~-------lsEKv~sLEkQLkEse~QL~~A~ASae 397 (617)
-+++.|-.|-+.+..||-+..++-. ...|-+.|.+|...++++.. --+.+.-|+.++.+...-|+.|..--+
T Consensus 109 q~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqree 187 (916)
T KOG0249|consen 109 QNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREK 187 (916)
T ss_pred hhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888899999999999999999988 89999999999999999887 344566666677666666776665544
Q ss_pred HHHHHHHhHHHhHhh
Q 007114 398 ASLEKQNMLYSTVKD 412 (617)
Q Consensus 398 a~~eeqn~l~S~Isd 412 (617)
-..+.-.-++.+.-+
T Consensus 188 mneeh~~rlsdtvdE 202 (916)
T KOG0249|consen 188 MNEEHNKRLSDTVDE 202 (916)
T ss_pred hhhhhccccccccHH
Confidence 444443344555443
No 129
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=87.22 E-value=22 Score=41.98 Aligned_cols=99 Identities=22% Similarity=0.245 Sum_probs=55.2
Q ss_pred hhcccchhchhhHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHhhhhhhhHhh
Q 007114 300 FNMNGSVQREAGLRSKLDSLVKQVE----------------------------VKESVIASLRENLSEAQARADGAEVRC 351 (617)
Q Consensus 300 f~L~as~~REsel~sKLkslEeqL~----------------------------~len~~e~LKe~i~~AEsra~~aeskc 351 (617)
.=|..+..||..+..++..|+..|+ .+|-....||+.|.++-.|=..--..+
T Consensus 20 ~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dy 99 (717)
T PF09730_consen 20 SLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDY 99 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3455566666666666666665555 333344444555555444444444555
Q ss_pred hhhHHhhHHHhhhhhhhhh-------hhHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 007114 352 KSLAETNIELNEDLKGSRA-------TSEKVESLERQLRESDIQLQHAVAYAEA 398 (617)
Q Consensus 352 ~~LteTN~eL~~el~~Lk~-------lsEKv~sLEkQLkEse~QL~~A~ASaea 398 (617)
..|.+-||-|+..+..||+ +..-+..|++.+--...|+..|.---+-
T Consensus 100 selEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~i 153 (717)
T PF09730_consen 100 SELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEI 153 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666665 4555556666666666665555444333
No 130
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=87.04 E-value=50 Score=35.95 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHH
Q 007114 373 EKVESLERQLRESDIQLQHAVAYAEAS 399 (617)
Q Consensus 373 EKv~sLEkQLkEse~QL~~A~ASaea~ 399 (617)
.++..++.++...+.++..+.+.....
T Consensus 204 ~~l~~l~~~l~~~~~~l~~~~a~~~~l 230 (498)
T TIGR03007 204 SEISEAQEELEAARLELNEAIAQRDAL 230 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555554444444444444443
No 131
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=86.77 E-value=45 Score=35.16 Aligned_cols=137 Identities=16% Similarity=0.193 Sum_probs=74.9
Q ss_pred HHHHHHHhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhh
Q 007114 222 LRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFN 301 (617)
Q Consensus 222 LrMLEkSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~ 301 (617)
++-.=+-.|+.+=.|=...-...+...|...+....++...|......+.+-+-...+....|+.....+......+
T Consensus 127 vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~--- 203 (325)
T PF08317_consen 127 VKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEI--- 203 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---
Confidence 33334444555555555555566667777777777777777766665555555544444444444444444333321
Q ss_pred cccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhh
Q 007114 302 MNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGS 368 (617)
Q Consensus 302 L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~L 368 (617)
++.=..+|.++...|......++..|..+.+.+.+.+....++..+++--.++..+|.++
T Consensus 204 -------~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 204 -------ESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred -------hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111235566666666666666776666666666655555555555544444444444333
No 132
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=86.59 E-value=23 Score=33.14 Aligned_cols=93 Identities=30% Similarity=0.363 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 007114 319 LVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEA 398 (617)
Q Consensus 319 lEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea 398 (617)
+--+++.++..+..+|+.+.+.+..-..+..++-.|+..|-++ +.....+..|+.++++.+.+...+-.--+.
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~-------~~~~~~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL-------RALKKEVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445667777788888888877777777766666665555444 556667788888888888888887777777
Q ss_pred HHHHHHhHHHhHhhhHHHHH
Q 007114 399 SLEKQNMLYSTVKDMENLIQ 418 (617)
Q Consensus 399 ~~eeqn~l~S~IsdMEnvIE 418 (617)
.-|+-+.|...|.||..+..
T Consensus 94 K~E~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 94 KSEEVEELRADVQDLKEMYR 113 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 77776666666666665543
No 133
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=86.58 E-value=14 Score=42.40 Aligned_cols=51 Identities=12% Similarity=0.144 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhh
Q 007114 374 KVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKV 424 (617)
Q Consensus 374 Kv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~Kv 424 (617)
-++.++++|++.+.|+..-......--.+.+..+-+++.+.+-|.|++.|+
T Consensus 199 ~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~ 249 (596)
T KOG4360|consen 199 LYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKI 249 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 355778888888777655544444555566777778888888888888743
No 134
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=86.57 E-value=73 Score=37.37 Aligned_cols=244 Identities=20% Similarity=0.152 Sum_probs=120.7
Q ss_pred HHHHHHHHHhhhhhhhHHHhHHHHHHHHHHHHhhhhhhhccccccchhhHH--HHHhhhhHHHHHHHHHHHHHHHHHhhH
Q 007114 97 VETALAFDLLSGLLDSELRELENFITTLEADFVKAHELISSYTELGKASIE--MEEKLLDSEDSLQQSRDQILEIKKQSA 174 (617)
Q Consensus 97 ~ekaleFDlL~gilDSEv~Ele~~~~tlq~~I~~~~~~i~s~~~~g~~f~~--~~~KL~~~~~sLkQ~~e~i~eik~qsa 174 (617)
.-|-|.|+=|-.-||+++++|.+-=++.+ ..|+...+-+ .-|-. =+.|+.-..--||++|..|--+-+-|-
T Consensus 11 ~Wk~~dle~LQreLd~~~~~l~~~Q~~S~----~srk~L~e~t---refkk~~pe~k~k~~~~llK~yQ~EiD~LtkRsk 83 (629)
T KOG0963|consen 11 YWKRFDLERLQRELDAEATEIAQRQDESE----ISRKRLAEET---REFKKNTPEDKLKMVNPLLKSYQSEIDNLTKRSK 83 (629)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhhhhHH----HHHHHHHHhH---HHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788899999999999988765554 3444333322 22332 367888888889999999998877764
Q ss_pred HHHHHHhh-hhccCCCCCCCCCCCcccccccchhhhhhhc-cHHHHHHHHHHHHHHhhhhhhhHHHhHHHHHHHHHHHhh
Q 007114 175 KFQRTLSA-LDREGNWISDKDTGSLEDDQFLNENAKIKLQ-TAEQQRHFLRMLEKSLAREMDLEKKLTESRQVEEALKFR 252 (617)
Q Consensus 175 ~fqr~~~~-~~~~~~~~~~~~~~~~ed~~~~~~~~~~~mq-t~eQqR~iLrMLEkSlA~e~dLEkkL~es~~~eeeLk~k 252 (617)
-=+.+|-. |+.-..-|.... +... -.+-..+.+ ..++.|...+-||+-...=.|++++= .....|+.+
T Consensus 84 ~aE~afl~vye~L~eaPDP~p--ll~s----a~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq----~~v~~l~e~ 153 (629)
T KOG0963|consen 84 FAEAAFLDVYEKLIEAPDPVP--LLAS----AAELLNKQQKASEENEELKEELEEVNNELADLKTQQ----VTVRNLKER 153 (629)
T ss_pred hhHHHHHHHHHHHhhCCCCch--HHHH----HHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhH----HHHHhHHHH
Confidence 43333321 221112111111 0000 011112222 24556666666766555444544432 234455555
Q ss_pred hhhhhHHH-HhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHH----
Q 007114 253 LGSFEQEL-LYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKE---- 327 (617)
Q Consensus 253 L~~~eqe~-~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~le---- 327 (617)
+...++.. -+.+.++...|+..- .|..+...| ++...+..+-.+..+...=+.+.+.++..-.+|-+++
T Consensus 154 l~k~~~~~~~~ie~~a~~~e~~~~--q~~~e~e~~----L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~d 227 (629)
T KOG0963|consen 154 LRKLEQLLEIFIENAANETEEKLE--QEWAEREAG----LKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYD 227 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Confidence 54444432 244555556655432 222333222 2222333333222222222222222221112222222
Q ss_pred -------HHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhh
Q 007114 328 -------SVIASLRENLSEAQARADGAEVRCKSLAETNIELNE 363 (617)
Q Consensus 328 -------n~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~ 363 (617)
..|.=+-.++..|..|+-.++.+|..|.+-=..-|.
T Consensus 228 ee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~ 270 (629)
T KOG0963|consen 228 EEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANS 270 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 223334455668888888888888887665444333
No 135
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=86.38 E-value=65 Score=36.59 Aligned_cols=119 Identities=18% Similarity=0.241 Sum_probs=69.5
Q ss_pred HhhhhhhhHhhhhhHHhhHHHhhhhhhhhh---h----hHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhh
Q 007114 341 QARADGAEVRCKSLAETNIELNEDLKGSRA---T----SEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDM 413 (617)
Q Consensus 341 Esra~~aeskc~~LteTN~eL~~el~~Lk~---l----sEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdM 413 (617)
+.....-......+...|-+|..+++.++. + .+.+..+++|++....+...........+.-+..+...+.++
T Consensus 305 ~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~ 384 (560)
T PF06160_consen 305 EKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEI 384 (560)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHH
Confidence 334445556677888899999999999998 3 347778888888888777777666665554444444444444
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHH
Q 007114 414 ENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASL 466 (617)
Q Consensus 414 EnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L 466 (617)
..-++.+.......- .....|...-..-.+.|.-|+..+....+.+
T Consensus 385 ~~~l~~ie~~q~~~~-------~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~l 430 (560)
T PF06160_consen 385 EEQLEEIEEEQEEIN-------ESLQSLRKDEKEAREKLQKLKQKLREIKRRL 430 (560)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433332222 2334444444444444444554444444444
No 136
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=86.35 E-value=28 Score=32.40 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHH
Q 007114 318 SLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAE 356 (617)
Q Consensus 318 slEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~Lte 356 (617)
.+.-....+.+.++.|++++..++.....++.++..|..
T Consensus 63 ~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~ 101 (151)
T PF11559_consen 63 RLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQK 101 (151)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555577777777777777777777777777777633
No 137
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=85.80 E-value=5.1 Score=35.54 Aligned_cols=90 Identities=23% Similarity=0.215 Sum_probs=69.4
Q ss_pred hhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHH
Q 007114 234 DLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLR 313 (617)
Q Consensus 234 dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~ 313 (617)
.+++...+.....-.+...++..++.+..++-.-...-.++|++....+.|..+.+-+..-+.-..-........|.+++
T Consensus 7 ~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~~~~ 86 (96)
T PF08647_consen 7 SMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKETEKEFV 86 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 46777788888888888999999999999999999999999999999999998877655444433333333334777777
Q ss_pred HHHHHHHHHH
Q 007114 314 SKLDSLVKQV 323 (617)
Q Consensus 314 sKLkslEeqL 323 (617)
.+|+.+|+|+
T Consensus 87 ~~l~~~Eke~ 96 (96)
T PF08647_consen 87 RKLKNLEKEL 96 (96)
T ss_pred HHHHHhhccC
Confidence 7777777653
No 138
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=84.97 E-value=50 Score=35.26 Aligned_cols=57 Identities=25% Similarity=0.323 Sum_probs=30.9
Q ss_pred HHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHH---HHhhHHHhhhhhHHHHHhhHhHHHHHHHH
Q 007114 403 QNMLYSTVKDMENLIQDLKLKVSKADSRADSAEE---KLIILSEANAGLTEEISFLRDRLECLEAS 465 (617)
Q Consensus 403 qn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~---kc~~LtEtN~eLneEL~fLksr~~~LE~~ 465 (617)
++.+..++..++..|++.+.+.....+....|+. +|.+.| ..|+..|+.++..||+.
T Consensus 227 l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t------~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 227 LEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFT------FKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555444444444444 455555 35777777777777654
No 139
>PF15294 Leu_zip: Leucine zipper
Probab=84.22 E-value=63 Score=34.50 Aligned_cols=91 Identities=19% Similarity=0.196 Sum_probs=63.5
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhH----------------HHHHHHHHHHHHHHhhhhh
Q 007114 414 ENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDR----------------LECLEASLHQAEETKLATA 477 (617)
Q Consensus 414 EnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr----------------~~~LE~~L~qa~~~K~sta 477 (617)
-.-|..|+.-.-++-+|--+.|..|+...+.+-+|...|+.++.- +.+||.++.++...=..++
T Consensus 131 ~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~~ 210 (278)
T PF15294_consen 131 NKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKAL 210 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHH
Confidence 345777888888888888888899999999999999999988871 4556666666655544556
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 007114 478 KDIGIRTKVITNLVMQMAVERERLRQQ 504 (617)
Q Consensus 478 kdI~~~tK~i~dLv~QLa~ErErL~~Q 504 (617)
.|.....+.+++-|.--=.+.-|.|.|
T Consensus 211 ~d~~~~~k~L~e~L~~~KhelL~~Qeq 237 (278)
T PF15294_consen 211 QDKESQQKALEETLQSCKHELLRVQEQ 237 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 666666666555555444455555555
No 140
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=84.18 E-value=89 Score=36.27 Aligned_cols=191 Identities=19% Similarity=0.241 Sum_probs=120.7
Q ss_pred HHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhccc----------------chhchhhHHHHHHHHHHHHH---------
Q 007114 270 ACERLFEAENSAEVLKGISKELLGRLQIVLFNMNG----------------SVQREAGLRSKLDSLVKQVE--------- 324 (617)
Q Consensus 270 ~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~a----------------s~~REsel~sKLkslEeqL~--------- 324 (617)
+.+=+.+|++....|+-+....=+=+-.+|.+|-| ...-+-.|.+.+..|.+||+
T Consensus 195 A~evl~~~ee~~~~L~~~~e~IP~L~~e~~~~lP~ql~~Lk~Gyr~m~~~gY~l~~~~id~~~~~L~~~l~~~~~~l~~L 274 (570)
T COG4477 195 AREVLEEAEEHMIALRSIMERIPSLLAELQTELPGQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKEQLVENSELLTQL 274 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHhHHHHh
Confidence 34445566666555555555444444444444433 33334566677777777777
Q ss_pred ---HHHHHHHHHHHHHH--------------HHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh---h----hHHHHHHHH
Q 007114 325 ---VKESVIASLRENLS--------------EAQARADGAEVRCKSLAETNIELNEDLKGSRA---T----SEKVESLER 380 (617)
Q Consensus 325 ---~len~~e~LKe~i~--------------~AEsra~~aeskc~~LteTN~eL~~el~~Lk~---l----sEKv~sLEk 380 (617)
.++-.+..+-+.|. ..+.+...--...+...+-|-.|+.++..++. + .-.|...++
T Consensus 275 eld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~ 354 (570)
T COG4477 275 ELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEK 354 (570)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHH
Confidence 12222222222221 22233333334455666778889999999988 2 237889999
Q ss_pred HHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHH
Q 007114 381 QLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLE 460 (617)
Q Consensus 381 QLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~ 460 (617)
.|++.+.++....+-.++...-+..+...+...+.-+.+++++--++- ...+.|-..-++-.+.|.-|++++.
T Consensus 355 eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~-------e~L~~LrkdEl~Are~l~~~~~~l~ 427 (570)
T COG4477 355 ELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQ-------EHLTSLRKDELEARENLERLKSKLH 427 (570)
T ss_pred HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888877777666666666666666777777666555543 5788888888888899999999877
Q ss_pred HHHHHHH
Q 007114 461 CLEASLH 467 (617)
Q Consensus 461 ~LE~~L~ 467 (617)
.+-+.+.
T Consensus 428 eikR~me 434 (570)
T COG4477 428 EIKRYME 434 (570)
T ss_pred HHHHHHH
Confidence 6665553
No 141
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=83.68 E-value=83 Score=35.50 Aligned_cols=47 Identities=23% Similarity=0.132 Sum_probs=32.9
Q ss_pred HhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHH
Q 007114 284 LKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVI 330 (617)
Q Consensus 284 L~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~ 330 (617)
++...+....+++..+-.|.....++.++..+++-++-|+++++.++
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~ 205 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEAD 205 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCC
Confidence 55556666777777777777777777777777777777777555443
No 142
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=83.35 E-value=36 Score=31.95 Aligned_cols=89 Identities=18% Similarity=0.294 Sum_probs=63.3
Q ss_pred HHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhh---HHHHHhhHhHHHHHHHHHH---HHHHHhhh
Q 007114 402 KQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGL---TEEISFLRDRLECLEASLH---QAEETKLA 475 (617)
Q Consensus 402 eqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eL---neEL~fLksr~~~LE~~L~---qa~~~K~s 475 (617)
-.+.+.|+|+.+|.=+--+|..+...+..-+.+..+...|+..|-++ ..++..|+..+..|+.+.. ++--+|.+
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E 96 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSE 96 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 45678899999999999999999999999999999999999888554 3455555556666666554 44445555
Q ss_pred hhHhhhhhhHHHHHH
Q 007114 476 TAKDIGIRTKVITNL 490 (617)
Q Consensus 476 takdI~~~tK~i~dL 490 (617)
-+.++-..-.=+++|
T Consensus 97 ~veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 97 EVEELRADVQDLKEM 111 (120)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555554444444443
No 143
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=83.04 E-value=49 Score=32.43 Aligned_cols=133 Identities=20% Similarity=0.221 Sum_probs=70.1
Q ss_pred HHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHH
Q 007114 282 EVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIEL 361 (617)
Q Consensus 282 EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL 361 (617)
-+++|..+.+++++.--+ +-++..+++|+..+..++..+..+-+.....+.+...+...-.++
T Consensus 8 ~~~~a~~~~~ld~~EDP~-----------------~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~ 70 (221)
T PF04012_consen 8 TLVKANINELLDKAEDPE-----------------KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKW 70 (221)
T ss_pred HHHHHHHHHHHHhhcCHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777665322 234444445555555555555544444444444443333333332
Q ss_pred hhhhhhh-hh--------hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhh
Q 007114 362 NEDLKGS-RA--------TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRAD 432 (617)
Q Consensus 362 ~~el~~L-k~--------lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe 432 (617)
......- +. .-.+...++.++..++.++..+....+..+ ..|..|++=|.+++.+..-.-.|..
T Consensus 71 ~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~-------~~l~~l~~kl~e~k~k~~~l~ar~~ 143 (221)
T PF04012_consen 71 EKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLK-------EQLEELEAKLEELKSKREELKAREN 143 (221)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222111 11 233555667777777776666666665544 4566666666666666666666665
Q ss_pred hHHHHH
Q 007114 433 SAEEKL 438 (617)
Q Consensus 433 ~AE~kc 438 (617)
.|...-
T Consensus 144 ~a~a~~ 149 (221)
T PF04012_consen 144 AAKAQK 149 (221)
T ss_pred HHHHHH
Confidence 555544
No 144
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.99 E-value=9 Score=38.59 Aligned_cols=50 Identities=20% Similarity=0.219 Sum_probs=35.2
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHH
Q 007114 307 QREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAE 356 (617)
Q Consensus 307 ~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~Lte 356 (617)
.|-+++..++..++.+..++++.|..|++++..+.++...+++++..+..
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777777777777777777777777766666666655543
No 145
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=82.90 E-value=30 Score=32.21 Aligned_cols=61 Identities=15% Similarity=0.173 Sum_probs=34.6
Q ss_pred hHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 007114 448 LTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSL 508 (617)
Q Consensus 448 LneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl 508 (617)
+..+++....+...|++++..+...=-....|+..-+..+.+.-+|.+.|.-|-..+|..|
T Consensus 85 ~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kL 145 (151)
T PF11559_consen 85 LERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKL 145 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555444443334444555556677777777777777776666655
No 146
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=82.88 E-value=1.3e+02 Score=36.99 Aligned_cols=97 Identities=22% Similarity=0.250 Sum_probs=68.7
Q ss_pred HHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHH---HHHHHhh
Q 007114 398 ASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLH---QAEETKL 474 (617)
Q Consensus 398 a~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~---qa~~~K~ 474 (617)
..+.+.++....|-+|++.+.+|-+.+-+.-.-++-+|.|.....+.=-.|..||..+-.++..|+..+. +....+.
T Consensus 449 di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~ 528 (980)
T KOG0980|consen 449 DIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQL 528 (980)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3455666666778899999998888887777666777788888888888899999999999999998865 4444444
Q ss_pred hhhHhhhhhh-HHHHHHHHHH
Q 007114 475 ATAKDIGIRT-KVITNLVMQM 494 (617)
Q Consensus 475 stakdI~~~t-K~i~dLv~QL 494 (617)
+-..|....+ +.+-.+|.++
T Consensus 529 ~~l~~~l~~KD~~~~~~~~~~ 549 (980)
T KOG0980|consen 529 AQLEDLLKQKDRLAAELVARE 549 (980)
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 4444444433 3344445444
No 147
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=82.75 E-value=55 Score=32.72 Aligned_cols=56 Identities=30% Similarity=0.480 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHH
Q 007114 329 VIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDI 387 (617)
Q Consensus 329 ~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~ 387 (617)
.|.+||++|.+...+....+.....+..-|-.|.+-|. .+...+..|.++|+.|+.
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~---~a~~e~~eL~k~L~~y~k 83 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLK---KAEEEVEELRKQLKNYEK 83 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHH
Confidence 46677777766666655555555555555555544433 344556666666666554
No 148
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=82.56 E-value=1.1e+02 Score=36.31 Aligned_cols=68 Identities=21% Similarity=0.210 Sum_probs=35.8
Q ss_pred HHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 007114 442 SEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENK 513 (617)
Q Consensus 442 tEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk 513 (617)
.-+=+++-.++.+|+.+++..+++|.+++..=..+ +..-..++-=..+|-.|-+||+..+..+-+.+.
T Consensus 558 kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~----~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 558 KKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAEL----ELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 33445666777888888888888887665432222 222222222233444555555555544444433
No 149
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=82.40 E-value=41 Score=32.10 Aligned_cols=12 Identities=33% Similarity=0.426 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 007114 325 VKESVIASLREN 336 (617)
Q Consensus 325 ~len~~e~LKe~ 336 (617)
+..+-+..+++.
T Consensus 106 ~~~~~l~~~~~~ 117 (191)
T PF04156_consen 106 ELESELEKLKED 117 (191)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 150
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=82.13 E-value=62 Score=32.90 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=49.9
Q ss_pred HHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhh
Q 007114 290 ELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSL 354 (617)
Q Consensus 290 el~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~L 354 (617)
.+...++.+...|.+.....+--+.++..+|+++..++.-++.|++++..+-.+++.........
T Consensus 21 ~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t 85 (264)
T PF06008_consen 21 KLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERT 85 (264)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666777888888888888999999999999999889999888887777776665544433
No 151
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=81.08 E-value=1.5e+02 Score=36.78 Aligned_cols=225 Identities=19% Similarity=0.198 Sum_probs=126.2
Q ss_pred hhHHHHHHhHHHH-hhhcccchhchhhHHHHHH--------------------HHHHHHH--------------------
Q 007114 286 GISKELLGRLQIV-LFNMNGSVQREAGLRSKLD--------------------SLVKQVE-------------------- 324 (617)
Q Consensus 286 g~skel~gkLq~~-qf~L~as~~REsel~sKLk--------------------slEeqL~-------------------- 324 (617)
+-|-.++||.=.. =-+-.--.-|||-|--=|. .+||-|-
T Consensus 320 NqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQk 399 (1041)
T KOG0243|consen 320 NQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQK 399 (1041)
T ss_pred hHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchH
Confidence 3455678886433 2333344569988877776 7777776
Q ss_pred --------HHHHHHHHHHHHHHHHHhhhh--hhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHH
Q 007114 325 --------VKESVIASLRENLSEAQARAD--GAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVA 394 (617)
Q Consensus 325 --------~len~~e~LKe~i~~AEsra~--~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~A 394 (617)
++=..|+.||.++..|..+-- .++.+-. .-+.+.+..-..++.+.+++..++++|++....+.+-.-
T Consensus 400 l~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~---~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~ 476 (1041)
T KOG0243|consen 400 LMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYT---QEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLE 476 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 666778888888887665421 2222221 223334444445555677888888888888887776555
Q ss_pred hHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhh-------hhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHH
Q 007114 395 YAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSR-------ADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLH 467 (617)
Q Consensus 395 Saea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESR-------Ae~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~ 467 (617)
.-.-.+++...+.+.|..-..-++++++.+-++..+ ....+.--+.+.+-+.+|...+.--.+.+..|=++|.
T Consensus 477 ~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld 556 (1041)
T KOG0243|consen 477 IKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLD 556 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555555565555555555555555555555555433 1111222222333344444444444444444444433
Q ss_pred HHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh-HHHHHHhh
Q 007114 468 QAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMEN-KVMVVKLQ 520 (617)
Q Consensus 468 qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eN-k~L~~k~k 520 (617)
... +.-.--..+|+++-+||..=...++..+.+-...= .+|...+.
T Consensus 557 ~~~-------~~~d~n~~~~~~~~~~l~~~~~~~~~~v~~~~s~~~~~l~~~~~ 603 (1041)
T KOG0243|consen 557 RKD-------RLDDDNQEVIDDFQSQLSENLSTLHGLVASSSSQQISQLTTMLA 603 (1041)
T ss_pred hhh-------ccccccHHHHHHHhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHh
Confidence 221 12223356788888888888888888776544433 44444444
No 152
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=80.79 E-value=84 Score=33.59 Aligned_cols=44 Identities=9% Similarity=0.191 Sum_probs=30.5
Q ss_pred HHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhH
Q 007114 245 VEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGIS 288 (617)
Q Consensus 245 ~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~s 288 (617)
++..+..|...+..-..|+++-...+..++-++|...+-++-..
T Consensus 158 ~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 201 (444)
T TIGR03017 158 IDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEK 201 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44445556666666777888888888888888887777666543
No 153
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=80.71 E-value=22 Score=40.19 Aligned_cols=101 Identities=20% Similarity=0.257 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHH----HHHHHHHHHhHHHH
Q 007114 314 SKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKV----ESLERQLRESDIQL 389 (617)
Q Consensus 314 sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv----~sLEkQLkEse~QL 389 (617)
++|+...+.++.+-....+|+.+...+++.-...|.++++|..+=.++..++.++++.+.++ ...=.++++.+.|.
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~ 426 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEERE 426 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45555555555555556667778888899999999999999888888888888888844433 34445555555555
Q ss_pred HHHHHhHHHHHHHHHhHHHhHhhhHHHH
Q 007114 390 QHAVAYAEASLEKQNMLYSTVKDMENLI 417 (617)
Q Consensus 390 ~~A~ASaea~~eeqn~l~S~IsdMEnvI 417 (617)
..+..+-+ ++...|..+|+|+=-.|
T Consensus 427 ~~~~~s~d---~~I~dLqEQlrDlmf~l 451 (493)
T KOG0804|consen 427 KEALGSKD---EKITDLQEQLRDLMFFL 451 (493)
T ss_pred HHHHHHHH---HHHHHHHHHHHhHheeh
Confidence 54444333 34334444555544333
No 154
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=80.68 E-value=63 Score=32.10 Aligned_cols=24 Identities=17% Similarity=0.059 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCC
Q 007114 593 HFFIAVLIVLISAAAYYFQKQNYP 616 (617)
Q Consensus 593 ~i~~a~lvll~~~~~~~~~~~~~p 616 (617)
+-|.--+.+|.--|+||...+|.|
T Consensus 255 ~~f~~~v~lLn~nI~~L~~~q~~~ 278 (302)
T PF10186_consen 255 QRFEYAVFLLNKNIAQLCFSQGID 278 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344444566667777777666655
No 155
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=80.66 E-value=1.2e+02 Score=35.20 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHH------HhH---hhhHHHHHHHHHhhhhhhh
Q 007114 373 EKVESLERQLRESDIQLQHAVAYAEASLEKQNMLY------STV---KDMENLIQDLKLKVSKADS 429 (617)
Q Consensus 373 EKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~------S~I---sdMEnvIEeLK~KvskAES 429 (617)
.++..|+.||.....++..|.+..+..+..+...- ..+ -....+|.+|+.+....+.
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~ 302 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRA 302 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHH
Confidence 45555555555555555555554444433321100 000 0123567777776666654
No 156
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=80.32 E-value=21 Score=36.69 Aligned_cols=75 Identities=17% Similarity=0.284 Sum_probs=57.2
Q ss_pred HhhhhhHHHHHhhHh---HHHHHHHHHHHHHHHhhhhhHhh---hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 007114 443 EANAGLTEEISFLRD---RLECLEASLHQAEETKLATAKDI---GIRTKVITNLVMQMAVERERLRQQISSLAMENKVMV 516 (617)
Q Consensus 443 EtN~eLneEL~fLks---r~~~LE~~L~qa~~~K~stakdI---~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L~ 516 (617)
..-.++-+|+.+++. .+.++.+....+..+|++-+++| ......+++.+.|.-.||++....|.-+..+=.-|.
T Consensus 15 k~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk 94 (230)
T PF10146_consen 15 KLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLK 94 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777 46666666678888888877655 888888999999999999999999988887655543
Q ss_pred H
Q 007114 517 V 517 (617)
Q Consensus 517 ~ 517 (617)
.
T Consensus 95 ~ 95 (230)
T PF10146_consen 95 D 95 (230)
T ss_pred H
Confidence 3
No 157
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=80.30 E-value=78 Score=37.45 Aligned_cols=71 Identities=27% Similarity=0.420 Sum_probs=42.5
Q ss_pred HhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHH------hhhhhHhh--------hhhhHHHHHHHHHHHHHHHHHHH
Q 007114 438 LIILSEANAGLTEEISFLRDRLECLEASLHQAEET------KLATAKDI--------GIRTKVITNLVMQMAVERERLRQ 503 (617)
Q Consensus 438 c~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~------K~stakdI--------~~~tK~i~dLv~QLa~ErErL~~ 503 (617)
.-.||++.-+..+||..++.++..|..++.++... +.+.-++. ..+.+.|++..+|.+.+-.++-+
T Consensus 627 ~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~ 706 (717)
T PF10168_consen 627 LPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVK 706 (717)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466666667777777777666666666544322 22222222 12356788888888888777776
Q ss_pred hhhhh
Q 007114 504 QISSL 508 (617)
Q Consensus 504 Qissl 508 (617)
||..+
T Consensus 707 ~ik~i 711 (717)
T PF10168_consen 707 QIKNI 711 (717)
T ss_pred HHHHH
Confidence 66554
No 158
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=80.01 E-value=80 Score=32.84 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=7.7
Q ss_pred HHHhhHhHHHHHHHHHHH
Q 007114 451 EISFLRDRLECLEASLHQ 468 (617)
Q Consensus 451 EL~fLksr~~~LE~~L~q 468 (617)
++..++..+..++..+.+
T Consensus 218 ~l~~~~~~l~~~~~~~~~ 235 (423)
T TIGR01843 218 ELEVLKRQIDELQLERQQ 235 (423)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 159
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=79.76 E-value=1.4e+02 Score=35.33 Aligned_cols=139 Identities=22% Similarity=0.330 Sum_probs=82.4
Q ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccCCCCCCCCCCCcccccccchhhhhhhccHHHHHHHHHH
Q 007114 145 SIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRM 224 (617)
Q Consensus 145 f~~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~~~~~~~~~~~~~~~~ed~~~~~~~~~~~mqt~eQqR~iLrM 224 (617)
|-.++..|+..--.|.+.|+.-..=|+..+.--|-|. -++++-.|..-+=
T Consensus 17 le~LQreLd~~~~~l~~~Q~~S~~srk~L~e~trefk------------------------------k~~pe~k~k~~~~ 66 (629)
T KOG0963|consen 17 LERLQRELDAEATEIAQRQDESEISRKRLAEETREFK------------------------------KNTPEDKLKMVNP 66 (629)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHh------------------------------ccCcHHHHHHHHH
Confidence 4456677777777777777776666666555544441 1344555666666
Q ss_pred HHHHhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhccc
Q 007114 225 LEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNG 304 (617)
Q Consensus 225 LEkSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~a 304 (617)
|=|+--+|+|. .....++-|-+-.++|+++.+|-.-.=+|.+.. ...++++- +
T Consensus 67 llK~yQ~EiD~--------------------LtkRsk~aE~afl~vye~L~eaPDP~pll~sa~-~~l~k~~~------~ 119 (629)
T KOG0963|consen 67 LLKSYQSEIDN--------------------LTKRSKFAEAAFLDVYEKLIEAPDPVPLLASAA-ELLNKQQK------A 119 (629)
T ss_pred HHHHHHHHHHH--------------------HHHHHHhhHHHHHHHHHHHhhCCCCchHHHHHH-HHhhhhhh------h
Confidence 66666666664 344567778888999999999998877766543 33444443 2
Q ss_pred chhchhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 007114 305 SVQREAGLRSKLDSLVKQVE---VKESVIASLRENLSEAQ 341 (617)
Q Consensus 305 s~~REsel~sKLkslEeqL~---~len~~e~LKe~i~~AE 341 (617)
++.++ +++.-|.+.+..+. +.+..+..|++.+.+-+
T Consensus 120 ~~e~~-~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~ 158 (629)
T KOG0963|consen 120 SEENE-ELKEELEEVNNELADLKTQQVTVRNLKERLRKLE 158 (629)
T ss_pred hhhHH-HHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHH
Confidence 22222 23333333333333 55555666666655433
No 160
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=79.71 E-value=70 Score=32.04 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh
Q 007114 330 IASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA 370 (617)
Q Consensus 330 ~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~ 370 (617)
|..|+-.+..+..+.+...-+++.|-..+.--...|+-+.+
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~ 54 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYED 54 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666667777776666655555555544
No 161
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=79.42 E-value=79 Score=32.46 Aligned_cols=99 Identities=22% Similarity=0.231 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhh---------hhhhhHHHHHHHHHHHHhHHHHHHH
Q 007114 322 QVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKG---------SRATSEKVESLERQLRESDIQLQHA 392 (617)
Q Consensus 322 qL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~---------Lk~lsEKv~sLEkQLkEse~QL~~A 392 (617)
-+++|+.....++..+.++=.+.-..+-+...+....-++...--. -+..-++..+||.+++.++.++..+
T Consensus 32 ~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~ 111 (225)
T COG1842 32 AIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQA 111 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335555555555555544444444444444444333333322111 1114456778888888888888888
Q ss_pred HHhHHHHHHHHHhHHHhHhhhHHHHHHH
Q 007114 393 VAYAEASLEKQNMLYSTVKDMENLIQDL 420 (617)
Q Consensus 393 ~ASaea~~eeqn~l~S~IsdMEnvIEeL 420 (617)
....+..+.....+..+|..++.-..-+
T Consensus 112 ~~~~~~l~~~~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 112 EEQVEKLKKQLAALEQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777766444444444444333333
No 162
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=78.97 E-value=87 Score=32.70 Aligned_cols=89 Identities=31% Similarity=0.402 Sum_probs=62.2
Q ss_pred HhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHH
Q 007114 408 STVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVI 487 (617)
Q Consensus 408 S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i 487 (617)
+.++|+.- ..+|.-.+..|..|..+++.+...|-+.=-+|..++..++.++..+|+.+..+...=. ..-..|
T Consensus 83 ~~v~~~~e-~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e-------~e~~~i 154 (239)
T COG1579 83 SAVKDERE-LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLE-------EEVAEI 154 (239)
T ss_pred hccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 33444432 5677777788888888888898888888888999999999999999998876654322 223344
Q ss_pred HHHHHHHHHHHHHHHHh
Q 007114 488 TNLVMQMAVERERLRQQ 504 (617)
Q Consensus 488 ~dLv~QLa~ErErL~~Q 504 (617)
.+=++.+..+|+.|...
T Consensus 155 ~e~~~~~~~~~~~L~~~ 171 (239)
T COG1579 155 REEGQELSSKREELKEK 171 (239)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45555666666666443
No 163
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=78.91 E-value=28 Score=41.43 Aligned_cols=35 Identities=29% Similarity=0.341 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhH
Q 007114 372 SEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTV 410 (617)
Q Consensus 372 sEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~I 410 (617)
.+|+..||.|+|..=. .|.-++ +.+|+++.|..+|
T Consensus 694 k~kieal~~qik~~~~---~a~~~~-~lkek~e~l~~e~ 728 (762)
T PLN03229 694 KEKIEALEQQIKQKIA---EALNSS-ELKEKFEELEAEL 728 (762)
T ss_pred HHHHHHHHHHHHHHHH---HHhccH-hHHHHHHHHHHHH
Confidence 5799999999987543 333333 3556654444444
No 164
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=78.83 E-value=1.3e+02 Score=34.41 Aligned_cols=160 Identities=22% Similarity=0.230 Sum_probs=84.1
Q ss_pred hHHhhHHHhhhhhhhhh----------------hhHHHHHHHHHHHHhHHHH-----HHHHHhHHHHHHHHHhHHHhHhh
Q 007114 354 LAETNIELNEDLKGSRA----------------TSEKVESLERQLRESDIQL-----QHAVAYAEASLEKQNMLYSTVKD 412 (617)
Q Consensus 354 LteTN~eL~~el~~Lk~----------------lsEKv~sLEkQLkEse~QL-----~~A~ASaea~~eeqn~l~S~Isd 412 (617)
+.+....+-..|++|++ .-+.+..+++++......+ ..|....+....+.+.+|..
T Consensus 217 ~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~--- 293 (560)
T PF06160_consen 217 YKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDI--- 293 (560)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH---
Confidence 34446666677777777 4445666666666665553 34444444444444444433
Q ss_pred hHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHh----------HHHHHHHHHHHHHHHhhhhhHh---
Q 007114 413 MENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRD----------RLECLEASLHQAEETKLATAKD--- 479 (617)
Q Consensus 413 MEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLks----------r~~~LE~~L~qa~~~K~stakd--- 479 (617)
++.=-..-...+.....-......+.+.|-.|..|+..++. +...++++|..+...-......
T Consensus 294 ----le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~ 369 (560)
T PF06160_consen 294 ----LEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEE 369 (560)
T ss_pred ----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33222222222233333444556666778888888888876 4666666666444443333333
Q ss_pred -------hhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 007114 480 -------IGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQ 520 (617)
Q Consensus 480 -------I~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L~~k~k 520 (617)
|.-+-+-+.+-..++..+-..+...+.+|-++-+--.+++.
T Consensus 370 ~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~ 417 (560)
T PF06160_consen 370 QQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQ 417 (560)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444455555555556666555544444433
No 165
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=78.78 E-value=1.5e+02 Score=35.37 Aligned_cols=111 Identities=15% Similarity=0.107 Sum_probs=63.0
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhh
Q 007114 368 SRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAG 447 (617)
Q Consensus 368 Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~e 447 (617)
|+.+..|-..+=.|..+...-....+-..+...+++...-....-++-++..+-...+.-|+ .+.+
T Consensus 393 l~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~--------------s~~~ 458 (716)
T KOG4593|consen 393 LARRLQKRALLLTQERDLNRAILGSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEA--------------SMEE 458 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhh--------------hhHH
Confidence 44444455555555555555555555556666666666656655555555555544333332 2777
Q ss_pred hHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHH
Q 007114 448 LTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVM 492 (617)
Q Consensus 448 LneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~ 492 (617)
+..++.-.+.++..|+..+.-++..=.+--.++.+.-+.++-+..
T Consensus 459 ~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e 503 (716)
T KOG4593|consen 459 LYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLRE 503 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 777888888887777777764444444444455555555554433
No 166
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=78.12 E-value=1.9e+02 Score=36.17 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHH
Q 007114 374 KVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEIS 453 (617)
Q Consensus 374 Kv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~ 453 (617)
+++..+.|+++|+.--+.|-..+ .++ +.-+..-...-+.-.-+-..|-..-|++...|...=.++....+
T Consensus 357 ~lnl~d~~~~ey~rlk~ea~~~~---~~e-------l~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~ 426 (1141)
T KOG0018|consen 357 ELNLKDDQVEEYERLKEEACKEA---LEE-------LEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRN 426 (1141)
T ss_pred cCCcchHHHHHHHHHHHHHhhhh---HHH-------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999998777766655 233 33333333333333334344444445555555555555556666
Q ss_pred hhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHH
Q 007114 454 FLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERL 501 (617)
Q Consensus 454 fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL 501 (617)
+|..+..++++.+....+...+...+......-+-++-..|...+..|
T Consensus 427 ~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql 474 (1141)
T KOG0018|consen 427 KLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQL 474 (1141)
T ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 666666666666666656555555555555555555555555444433
No 167
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=78.09 E-value=1.4e+02 Score=34.42 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=17.4
Q ss_pred hhhhhhHHHHHHHHHHHHhHHHHHHH
Q 007114 367 GSRATSEKVESLERQLRESDIQLQHA 392 (617)
Q Consensus 367 ~Lk~lsEKv~sLEkQLkEse~QL~~A 392 (617)
.+..+.+++..+|.+|.+.+.++..+
T Consensus 392 ~~~~~~~~~~~~e~el~~l~~~l~~~ 417 (650)
T TIGR03185 392 AKSQLLKELRELEEELAEVDKKISTI 417 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34446677777777777777776654
No 168
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=77.67 E-value=2e+02 Score=36.00 Aligned_cols=106 Identities=22% Similarity=0.242 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHH-------HHHHHHH-------HHHHHH
Q 007114 265 EEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLD-------SLVKQVE-------VKESVI 330 (617)
Q Consensus 265 E~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLk-------slEeqL~-------~len~~ 330 (617)
|.+..++.++--++--++-|.-..+++-.+|+..-.+..-...||.++..|.- ++-.|+. ...++.
T Consensus 251 e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l 330 (1200)
T KOG0964|consen 251 EESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVL 330 (1200)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHH
Confidence 33444555555566666666667777777777777777777778887766553 3333333 566677
Q ss_pred HHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh
Q 007114 331 ASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA 370 (617)
Q Consensus 331 e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~ 370 (617)
+.+++.|.+-+.....-+-+-..|+++-..++..|..|+.
T Consensus 331 ~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~ 370 (1200)
T KOG0964|consen 331 QKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQ 370 (1200)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 7777777777777777777777787777777777777665
No 169
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=76.85 E-value=4.5 Score=43.49 Aligned_cols=53 Identities=23% Similarity=0.360 Sum_probs=40.2
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHH
Q 007114 415 NLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLH 467 (617)
Q Consensus 415 nvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~ 467 (617)
+++.+|...+..+|.|...+|..+..++.+...+...+..+.+++.+||...+
T Consensus 137 ~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsR 189 (370)
T PF02994_consen 137 NIDESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSR 189 (370)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34456778888888888888888888888888888899999999999998876
No 170
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=76.73 E-value=56 Score=29.23 Aligned_cols=67 Identities=21% Similarity=0.288 Sum_probs=52.3
Q ss_pred HHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHH
Q 007114 402 KQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQ 468 (617)
Q Consensus 402 eqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~q 468 (617)
....+...+..+...+.+-..+..+|..||+............=-+|..+|+.|+++...++..+..
T Consensus 40 ~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 40 KEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566778889999999999999988888888887777778888888888888888777764
No 171
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=76.23 E-value=29 Score=36.74 Aligned_cols=18 Identities=11% Similarity=-0.127 Sum_probs=7.2
Q ss_pred cccccccccccccCCchhH
Q 007114 573 DLKSEVGTLRRIDAGLLTS 591 (617)
Q Consensus 573 d~~~~~~tvr~i~~~~l~~ 591 (617)
|.++.+ +||-....-=.|
T Consensus 273 ~~I~~~-si~~~~~~~~~W 290 (314)
T PF04111_consen 273 DKIGGV-SIKLQFNSEEEW 290 (314)
T ss_dssp TEECTC-ES-STTS-HHHH
T ss_pred CccCCe-eeeecCCChhHH
Confidence 444444 455544433344
No 172
>PF13514 AAA_27: AAA domain
Probab=76.05 E-value=2e+02 Score=35.28 Aligned_cols=33 Identities=27% Similarity=0.264 Sum_probs=22.5
Q ss_pred HHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHh
Q 007114 244 QVEEALKFRLGSFEQELLYTEEEAMDACERLFE 276 (617)
Q Consensus 244 ~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~E 276 (617)
.-...+..++...+.+...+++.+..++.++..
T Consensus 743 ~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~ 775 (1111)
T PF13514_consen 743 AEIRELRRRIEQMEADLAAFEEQVAALAERLGP 775 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 333455556666677777788888888887655
No 173
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=75.58 E-value=1.5e+02 Score=33.51 Aligned_cols=64 Identities=19% Similarity=0.167 Sum_probs=47.2
Q ss_pred HhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHH
Q 007114 293 GRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAE 356 (617)
Q Consensus 293 gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~Lte 356 (617)
.+|..++.++.....+=.+...+...|+.+|++++..|..+..++.+.+.........+..+..
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~ 101 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNA 101 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Confidence 5677777777777666677777777888888888888888888888777766666655555533
No 174
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=75.56 E-value=2.1e+02 Score=35.27 Aligned_cols=100 Identities=20% Similarity=0.213 Sum_probs=62.8
Q ss_pred HHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHH
Q 007114 381 QLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLE 460 (617)
Q Consensus 381 QLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~ 460 (617)
+..+...|+..+.-+.+...+ ....+...++.++.....+|++++.-......|--.=.-|-.|+..|...+.
T Consensus 446 K~~di~kQle~~~~s~~~~~~-------~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~ 518 (980)
T KOG0980|consen 446 KYDDIQKQLESAEQSIDDVEE-------ENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLS 518 (980)
T ss_pred HHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444455544444443332 3666777788888888888888887777777776666667777777766533
Q ss_pred HHH-------HHHHHHHHHhhhhhHhhhhhhHHH
Q 007114 461 CLE-------ASLHQAEETKLATAKDIGIRTKVI 487 (617)
Q Consensus 461 ~LE-------~~L~qa~~~K~stakdI~~~tK~i 487 (617)
.+. ..|..+.+.|..-+...+.+-.-+
T Consensus 519 ~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e~ 552 (980)
T KOG0980|consen 519 NLAQSHNNQLAQLEDLLKQKDRLAAELVAREEER 552 (980)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 332 234456667777777777666333
No 175
>PRK10869 recombination and repair protein; Provisional
Probab=74.30 E-value=1.6e+02 Score=33.49 Aligned_cols=36 Identities=14% Similarity=0.144 Sum_probs=28.5
Q ss_pred HHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcc
Q 007114 268 MDACERLFEAENSAEVLKGISKELLGRLQIVLFNMN 303 (617)
Q Consensus 268 ~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~ 303 (617)
...|.+|-.+....+-+...-.+...++...+|.+.
T Consensus 160 ~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~ 195 (553)
T PRK10869 160 RAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLK 195 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 367888888888888888888888888888877654
No 176
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=74.16 E-value=18 Score=31.37 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHhhhhhHHhhHHHhhhhhhhhh
Q 007114 316 LDSLVKQVEVKESVIASLRENLSEAQARADG-AEVRCKSLAETNIELNEDLKGSRA 370 (617)
Q Consensus 316 LkslEeqL~~len~~e~LKe~i~~AEsra~~-aeskc~~LteTN~eL~~el~~Lk~ 370 (617)
|+..|+++..+...|=+||-.|+--+.|..+ +..-.+.+...|++|+.++..|+.
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~ 57 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKR 57 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999985 577888899999999988877665
No 177
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=73.52 E-value=1.1e+02 Score=30.93 Aligned_cols=103 Identities=20% Similarity=0.263 Sum_probs=68.2
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhh
Q 007114 361 LNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLII 440 (617)
Q Consensus 361 L~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~ 440 (617)
|.++-.-+..|..-|...|..+.+-..+|+.+...+.+-..--......+..|-.+++..+..+.+++..+..+-....
T Consensus 62 L~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~- 140 (188)
T PF05335_consen 62 LAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELA- 140 (188)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4444444555555566666666666666666666666655555556677888999999999999999887766654322
Q ss_pred HHHhhhhhHHHHHhhHhHHHHHHHHHHHHH
Q 007114 441 LSEANAGLTEEISFLRDRLECLEASLHQAE 470 (617)
Q Consensus 441 LtEtN~eLneEL~fLksr~~~LE~~L~qa~ 470 (617)
+ =+.=|.--|.|++.|.++|..+.
T Consensus 141 --e----K~qLLeaAk~Rve~L~~QL~~Ar 164 (188)
T PF05335_consen 141 --E----KTQLLEAAKRRVEELQRQLQAAR 164 (188)
T ss_pred --H----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12235567789999999998543
No 178
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=72.82 E-value=1.2e+02 Score=31.09 Aligned_cols=96 Identities=17% Similarity=0.233 Sum_probs=59.0
Q ss_pred hhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhh
Q 007114 351 CKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSR 430 (617)
Q Consensus 351 c~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESR 430 (617)
|+.|=+.=-.|=.+-..||....+...|.-.+...+.++....+..+.. |..++.++...+.|
T Consensus 60 sKklydnYYkL~~KY~~LK~~~~~~~~l~~~i~~le~~lvd~~~~kd~~-----------------i~~~~~~l~~~~~r 122 (196)
T PF15272_consen 60 SKKLYDNYYKLYSKYQELKKSSKQSEDLQSRISNLEKQLVDQMIEKDRE-----------------IRTLQDELLSLELR 122 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhHHH-----------------HHHHHHHHHHHHHH
Confidence 4444444455556666666666666666666666666665444443321 55666666666665
Q ss_pred hhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHh
Q 007114 431 ADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETK 473 (617)
Q Consensus 431 Ae~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K 473 (617)
.+..+.+- ..|...+.+|..+||.+|..-++.+
T Consensus 123 ~~el~~~r----------~~e~~~YesRI~dLE~~L~~~n~~~ 155 (196)
T PF15272_consen 123 NKELQNER----------ERERIAYESRIADLERQLNSRNNSS 155 (196)
T ss_pred HHHHHhHH----------HHHHHHHHHHHHHHHHHHHHhcccC
Confidence 54444332 3677789999999999998544443
No 179
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=71.66 E-value=1.7e+02 Score=32.44 Aligned_cols=136 Identities=22% Similarity=0.200 Sum_probs=72.7
Q ss_pred HHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh-hhHHHHHHHHHHH--HhHHHHHHHHHhHHHH-HHHHHhHHHhHhhhHH
Q 007114 340 AQARADGAEVRCKSLAETNIELNEDLKGSRA-TSEKVESLERQLR--ESDIQLQHAVAYAEAS-LEKQNMLYSTVKDMEN 415 (617)
Q Consensus 340 AEsra~~aeskc~~LteTN~eL~~el~~Lk~-lsEKv~sLEkQLk--Ese~QL~~A~ASaea~-~eeqn~l~S~IsdMEn 415 (617)
-+.....--+++..|.+-|++|.+++.+|-. ..++..-++++.. ++..|+..|+--..+. ...+++..+
T Consensus 121 iqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~kel~~ql~~aKlq~~~~l~a~~ee~~~------- 193 (391)
T KOG1850|consen 121 IQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKELWEQLGKAKLQEIKLLTAKLEEASI------- 193 (391)
T ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------
Confidence 3444455567888999999999999988876 4444444444433 3444444443322221 001111111
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHH
Q 007114 416 LIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVIT 488 (617)
Q Consensus 416 vIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~ 488 (617)
. ++-+.-| ...-|--....++..-..|.++++.|-.+.+.++..|..-++.=.+--.+|..-+|-|+
T Consensus 194 --~---e~~~glE-Kd~lak~~~e~~~~~e~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~k 260 (391)
T KOG1850|consen 194 --Q---EKKSGLE-KDELAKIMLEEMKQVEGQLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIK 260 (391)
T ss_pred --H---HHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 0 1111111 11223334455666667788888888888888888887655554444444444444443
No 180
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=70.27 E-value=1.5e+02 Score=31.47 Aligned_cols=93 Identities=24% Similarity=0.273 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHH
Q 007114 371 TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTE 450 (617)
Q Consensus 371 lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLne 450 (617)
+..++..++..+.+.+.+|..........+.++..+.....+...=...|+..+...+.|.+.|..=..+|+..+..=.+
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~ 298 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSE 298 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHH
Confidence 66777777777777777777777777777777777777777777778888888888888888888999999998888888
Q ss_pred HHHhhHhHHHHHH
Q 007114 451 EISFLRDRLECLE 463 (617)
Q Consensus 451 EL~fLksr~~~LE 463 (617)
.+..|+.+...|=
T Consensus 299 ~~~~l~~~~~~l~ 311 (344)
T PF12777_consen 299 QIEELEEQLKNLV 311 (344)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccH
Confidence 8888877766553
No 181
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=70.13 E-value=21 Score=31.63 Aligned_cols=44 Identities=30% Similarity=0.327 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhh
Q 007114 325 VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGS 368 (617)
Q Consensus 325 ~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~L 368 (617)
+++..+..|..+-.+=..+..+++.+|..|.++|-++...|+..
T Consensus 36 ~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 36 ELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777777777777888888999999999999998887643
No 182
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=70.09 E-value=1.2e+02 Score=33.70 Aligned_cols=59 Identities=20% Similarity=0.310 Sum_probs=37.7
Q ss_pred hhhhhHHHHHHHHHHHHhHHH-------HHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhh
Q 007114 368 SRATSEKVESLERQLRESDIQ-------LQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKAD 428 (617)
Q Consensus 368 Lk~lsEKv~sLEkQLkEse~Q-------L~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAE 428 (617)
|++-+.|...||+|+.++=.. |.+.-|+.++.-+. ..|...+|+..+||..+++++|-|
T Consensus 253 LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Y--qs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 253 LQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAY--QSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344466777888888876432 44444555554433 245667777778888887777776
No 183
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.25 E-value=2.8e+02 Score=34.07 Aligned_cols=27 Identities=15% Similarity=0.163 Sum_probs=17.4
Q ss_pred HHhHHHhHhhhHHHHHHHHHhhhhhhh
Q 007114 403 QNMLYSTVKDMENLIQDLKLKVSKADS 429 (617)
Q Consensus 403 qn~l~S~IsdMEnvIEeLK~KvskAES 429 (617)
+..|......=|-++.-||+++..-+.
T Consensus 530 ~s~L~aa~~~ke~irq~ikdqldelsk 556 (1118)
T KOG1029|consen 530 KSELEAARRKKELIRQAIKDQLDELSK 556 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555566667777777777776665
No 184
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=69.18 E-value=99 Score=33.58 Aligned_cols=144 Identities=20% Similarity=0.195 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhh
Q 007114 368 SRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAG 447 (617)
Q Consensus 368 Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~e 447 (617)
|++.+|=+.-|=+.|-.+..+--.=+.-++..++.+..+..+..++.-....-.+.-....+.--+--.-....-+.|-.
T Consensus 4 L~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~ 83 (319)
T PF09789_consen 4 LQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKK 83 (319)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHH
Q ss_pred hHHHHHhhHhHHHHHHHH---HHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 007114 448 LTEEISFLRDRLECLEAS---LHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQ 520 (617)
Q Consensus 448 LneEL~fLksr~~~LE~~---L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L~~k~k 520 (617)
|..|+..|+.|+..++.- |++-...--.....+|.+.-. .||+.|-.|+-.+.+.+..|..-++
T Consensus 84 L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~---------~ere~lV~qLEk~~~q~~qLe~d~q 150 (319)
T PF09789_consen 84 LKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFP---------HEREDLVEQLEKLREQIEQLERDLQ 150 (319)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccc---------hHHHHHHHHHHHHHHHHHHHHHHHH
No 185
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=69.02 E-value=2.5e+02 Score=33.32 Aligned_cols=138 Identities=14% Similarity=0.115 Sum_probs=89.7
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHH
Q 007114 371 TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTE 450 (617)
Q Consensus 371 lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLne 450 (617)
...+...++..+.....++.+..++.+....++.- +......|...+. +-.....++.-|-....-..+
T Consensus 173 ~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~-------~~~~~~~l~~~~~----~~~~~~~~~~~l~~~~~~~~~ 241 (670)
T KOG0239|consen 173 ALKESLKLESDLGDLVTELEHVTNSISELESVLKS-------AQEERRVLADSLG----NYADLRRNIKPLEGLESTIKK 241 (670)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHhh----hhhhHHHhhhhhhhhhhHHHH
Confidence 34455566777777777777777766654433222 3333333333333 122233445555555555555
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 007114 451 EISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQ 520 (617)
Q Consensus 451 EL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L~~k~k 520 (617)
++..|+.++..|.+.+..+...-...-+++.-..+.+..+..+|+..++.++.+. .-..+|+-|-..+.
T Consensus 242 ~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~ 310 (670)
T KOG0239|consen 242 KIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEIL 310 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 6788888888888888888887777777777777888888999999999888888 77777777755554
No 186
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=68.35 E-value=1.8e+02 Score=31.54 Aligned_cols=105 Identities=21% Similarity=0.207 Sum_probs=62.4
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhH
Q 007114 370 ATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLT 449 (617)
Q Consensus 370 ~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLn 449 (617)
.|++|++.||..-......+.+-+.....+.++--++ |..+++.|-+ |=.....--.....=++.|..-.
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqL------v~dcv~QL~~----An~qia~LseELa~k~Ee~~rQQ 233 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQL------VLDCVKQLSE----ANQQIASLSEELARKTEENRRQQ 233 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHH------HHHHHHHhhh----cchhHHHHHHHHHHHHHHHHHHH
Confidence 3677777777765555554444443333333331122 2223444422 33333333456666778899999
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhh
Q 007114 450 EEISFLRDRLECLEASLHQAEETKLATAKDIGIRT 484 (617)
Q Consensus 450 eEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~t 484 (617)
+|+..|-+++-+|+.++++.-.++..-...++..+
T Consensus 234 EEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~sk 268 (306)
T PF04849_consen 234 EEITSLLSQIVDLQQRCKQLAAENEELQQHLQASK 268 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999999999877666655444444443
No 187
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=67.89 E-value=46 Score=35.84 Aligned_cols=71 Identities=21% Similarity=0.381 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHH
Q 007114 312 LRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQH 391 (617)
Q Consensus 312 l~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~ 391 (617)
||.|||..+..|.+-++.|++||-++++-. |-|+.|=.-+.+.
T Consensus 73 LkakLkes~~~l~dRetEI~eLksQL~RMr-------------------------------------EDWIEEECHRVEA 115 (305)
T PF15290_consen 73 LKAKLKESENRLHDRETEIDELKSQLARMR-------------------------------------EDWIEEECHRVEA 115 (305)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------------------------------------HHHHHHHHHHHHH
Confidence 566777777777777777777776665432 5566665555555
Q ss_pred HHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhh
Q 007114 392 AVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKA 427 (617)
Q Consensus 392 A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskA 427 (617)
--|--||++| |+.+..||+-+|+.+...
T Consensus 116 QLALKEARkE--------IkQLkQvieTmrssL~ek 143 (305)
T PF15290_consen 116 QLALKEARKE--------IKQLKQVIETMRSSLAEK 143 (305)
T ss_pred HHHHHHHHHH--------HHHHHHHHHHHHhhhchh
Confidence 5566677764 999999999999876544
No 188
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=67.43 E-value=1.1e+02 Score=36.06 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=28.8
Q ss_pred HHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHH
Q 007114 437 KLIILSEANAGLTEEISFLRDRLECLEASLHQAEE 471 (617)
Q Consensus 437 kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~ 471 (617)
+...+-..+-.|+.+|..=+.+++.|+++|.++..
T Consensus 475 ei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 475 EIRARDRRIERLEKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667788888888998888999999999987653
No 189
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=67.29 E-value=78 Score=37.56 Aligned_cols=86 Identities=23% Similarity=0.273 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHH
Q 007114 371 TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTE 450 (617)
Q Consensus 371 lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLne 450 (617)
.+||+.-||.--.....|..--..-++|..++ |+|+|.+|++-..|+.-+|--.+.---..+-|.--.+.|--
T Consensus 109 yQerLaRLe~dkesL~LQvsvLteqVeaQgEK-------IrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLma 181 (861)
T KOG1899|consen 109 YQERLARLEMDKESLQLQVSVLTEQVEAQGEK-------IRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMA 181 (861)
T ss_pred HHHHHHHHhcchhhheehHHHHHHHHHHhhhh-------HHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHH
Confidence 45666666665544455544444445665554 89999999888888877775444333333455555667777
Q ss_pred HHHhhHhHHHHHH
Q 007114 451 EISFLRDRLECLE 463 (617)
Q Consensus 451 EL~fLksr~~~LE 463 (617)
|++.||=|+--||
T Consensus 182 evSeLKLkltalE 194 (861)
T KOG1899|consen 182 EVSELKLKLTALE 194 (861)
T ss_pred HHHHhHHHHHHHH
Confidence 8888777666665
No 190
>PRK11281 hypothetical protein; Provisional
Probab=67.19 E-value=3.4e+02 Score=34.17 Aligned_cols=154 Identities=18% Similarity=0.187 Sum_probs=86.8
Q ss_pred HHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccch-----hch--------------
Q 007114 249 LKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSV-----QRE-------------- 309 (617)
Q Consensus 249 Lk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~-----~RE-------------- 309 (617)
|..+|...+++....++....+...+..+.+..|--+....+.+.|+|.+...|++.. .++
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~ 205 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLN 205 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 3333444444555555566666677777777777777777777777777777776632 112
Q ss_pred -----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhhhhhH-h----------hhhhHH
Q 007114 310 -----------------AGLRSKLDSLVKQVEVKESVIASLRENLSE-----AQARADGAEV-R----------CKSLAE 356 (617)
Q Consensus 310 -----------------sel~sKLkslEeqL~~len~~e~LKe~i~~-----AEsra~~aes-k----------c~~Lte 356 (617)
+=.+.+.+-+..++..++..++.|.+.+.+ ||..+.+|+. + ...+-+
T Consensus 206 ~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~~~a~~~~~~~~~~~~p~i~~~~~ 285 (1113)
T PRK11281 206 AQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQELE 285 (1113)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHH
Confidence 111111111222222445555555555542 3334433321 1 333556
Q ss_pred hhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHh
Q 007114 357 TNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNM 405 (617)
Q Consensus 357 TN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~ 405 (617)
.|-+|.+.+.. ..++.+.+-.|-...+.++.....+-...+++.+.
T Consensus 286 ~N~~Ls~~L~~---~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~ 331 (1113)
T PRK11281 286 INLQLSQRLLK---ATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISV 331 (1113)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777666554 45677777777777777777777777766666544
No 191
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=66.31 E-value=3.6e+02 Score=34.23 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=32.1
Q ss_pred cchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhh
Q 007114 304 GSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCK 352 (617)
Q Consensus 304 as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~ 352 (617)
|..-||.-=..++..|+..+..+...+..+...+...+.+......+-.
T Consensus 732 G~~aR~~~R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~ 780 (1353)
T TIGR02680 732 GAAARERARLRRIAELDARLAAVDDELAELARELRALGARQRALADELA 780 (1353)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666677777777777777777777777766666555555433
No 192
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=65.75 E-value=2e+02 Score=31.17 Aligned_cols=50 Identities=26% Similarity=0.368 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhh-hhhHHhhHH
Q 007114 311 GLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRC-KSLAETNIE 360 (617)
Q Consensus 311 el~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc-~~LteTN~e 360 (617)
.|..|+++||+.-..|.+....|+......|.+-++--..| ++|.++|.+
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~q 214 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQ 214 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchh
Confidence 46667777777666666666666666666666666555555 566666665
No 193
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=65.61 E-value=66 Score=30.18 Aligned_cols=60 Identities=20% Similarity=0.214 Sum_probs=44.7
Q ss_pred HHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHH
Q 007114 402 KQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQ 468 (617)
Q Consensus 402 eqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~q 468 (617)
.++.+...+..|+.-|++.|.....-= ++-..|..+|-.|..+-.+.-.|+.+|+.++..
T Consensus 10 s~~el~n~La~Le~slE~~K~S~~eL~-------kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~e 69 (107)
T PF09304_consen 10 SQNELQNRLASLERSLEDEKTSQGELA-------KQKDQLRNALQSLQAQNASRNQRIAELQAKIDE 69 (107)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778889999999887655542 234459999999999999999999999999873
No 194
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=65.22 E-value=2.8e+02 Score=32.53 Aligned_cols=13 Identities=8% Similarity=0.345 Sum_probs=5.5
Q ss_pred hHHHHHHHHHHHH
Q 007114 457 DRLECLEASLHQA 469 (617)
Q Consensus 457 sr~~~LE~~L~qa 469 (617)
+++..|+.++.++
T Consensus 311 ~~~~~l~~ql~~l 323 (726)
T PRK09841 311 EQIVNVDNQLNEL 323 (726)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 195
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=64.65 E-value=44 Score=28.61 Aligned_cols=55 Identities=31% Similarity=0.359 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhh
Q 007114 311 GLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDL 365 (617)
Q Consensus 311 el~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el 365 (617)
.|+.+|.++..++...+..+..|-..=..|.+++..|-.+|..|..-|--|..++
T Consensus 9 ~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 9 TLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777777777777777777777777766644444444443
No 196
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=64.32 E-value=2.2e+02 Score=31.14 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=9.6
Q ss_pred hhhHHHHHhhHhHHHHHHHHHH
Q 007114 446 AGLTEEISFLRDRLECLEASLH 467 (617)
Q Consensus 446 ~eLneEL~fLksr~~~LE~~L~ 467 (617)
.++..+++.+++.+..++.++.
T Consensus 239 ~~~~~~i~~l~~~i~~~~~~~~ 260 (457)
T TIGR01000 239 ATIQQQIDQLQKSIASYQVQKA 260 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444333
No 197
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=63.94 E-value=74 Score=28.48 Aligned_cols=50 Identities=24% Similarity=0.292 Sum_probs=42.1
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHH
Q 007114 417 IQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASL 466 (617)
Q Consensus 417 IEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L 466 (617)
|++||+|-.....-++.+-.--..|...|-+|.+|-.....|+..|=.++
T Consensus 27 ieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 27 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999998888777777777777899999999999999999988876554
No 198
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=63.43 E-value=3.9e+02 Score=33.55 Aligned_cols=57 Identities=14% Similarity=0.171 Sum_probs=29.4
Q ss_pred hhhHHHHHhhHhHHHHHHHHH-HHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHH
Q 007114 446 AGLTEEISFLRDRLECLEASL-HQAEETKLATAKDIGIRTKVITNLVMQMAVERERLR 502 (617)
Q Consensus 446 ~eLneEL~fLksr~~~LE~~L-~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~ 502 (617)
.+|.+=++.+..++.+.-.+. .++..-.+..--...++.+....+-++..-.|.-+.
T Consensus 574 ~~l~~~~~~~~~~v~~~~s~~~~~l~~~~~~~~s~~s~~~~~~e~~~t~~~~~r~~~~ 631 (1041)
T KOG0243|consen 574 SQLSENLSTLHGLVASSSSQQISQLTTMLAQMESFLSAKSKATEIMKTKISKDRDILS 631 (1041)
T ss_pred hhhhHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHhhhhccchhhhhhhhhhHHHHHH
Confidence 345555555555544433333 455544555544555555666666666655555443
No 199
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=62.91 E-value=1.2e+02 Score=31.37 Aligned_cols=76 Identities=21% Similarity=0.286 Sum_probs=47.7
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhh
Q 007114 376 ESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFL 455 (617)
Q Consensus 376 ~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fL 455 (617)
..-++-|.+|......=...-.++.+++-.....|.+||++|...++.--+.. ..+ ..+-+|+.-|
T Consensus 28 e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~-------------~~i-~r~~eey~~L 93 (230)
T PF10146_consen 28 ENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQ-------------EKI-QRLYEEYKPL 93 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHH-HHHHHHHHHH
Confidence 33445555555555555555556666666777889999999999888555544 222 2344567777
Q ss_pred HhHHHHHHHH
Q 007114 456 RDRLECLEAS 465 (617)
Q Consensus 456 ksr~~~LE~~ 465 (617)
++.++.+-..
T Consensus 94 k~~in~~R~e 103 (230)
T PF10146_consen 94 KDEINELRKE 103 (230)
T ss_pred HHHHHHHHHH
Confidence 7766666444
No 200
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=61.71 E-value=3e+02 Score=31.77 Aligned_cols=275 Identities=17% Similarity=0.116 Sum_probs=141.3
Q ss_pred hhhhccHHHHHHHHHHHHHHhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhH
Q 007114 209 KIKLQTAEQQRHFLRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGIS 288 (617)
Q Consensus 209 ~~~mqt~eQqR~iLrMLEkSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~s 288 (617)
+..||.+. |||++-.-+ ||.- .-...|..|||-.++-..-=-|.+...+--|+..-|-.|+.+-
T Consensus 185 kvrlqe~~------~ll~~Rve~---le~~-----Sal~~lq~~L~la~~~~~~~~e~~i~~~~~f~~r~~~~E~e~r-- 248 (554)
T KOG4677|consen 185 KVRLQEVR------RLLKGRVES---LERF-----SALRSLQDKLQLAEEAVSMHDENVITAVLIFLKRTLSKEIEFR-- 248 (554)
T ss_pred HHHHHHHH------HHHHhhhHH---HHHH-----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHH--
Confidence 66777666 466654321 1111 1334455555555553333334455555555555555555442
Q ss_pred HHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhh
Q 007114 289 KELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGS 368 (617)
Q Consensus 289 kel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~L 368 (617)
-++.-++-..|+|+--.++=+|.+-+++--- -|-.-|.++.+++..-..-.|.-- +-+--+.+.+|-+++.=.-..+
T Consensus 249 -n~~E~~~lA~r~l~~~kKe~de~k~~~~l~~-~l~~keeL~~s~~~e~~i~qs~~k-stas~~E~ee~rve~~~s~ed~ 325 (554)
T KOG4677|consen 249 -NELEVRQLALRHLIHFKKEIDEQKLLLDLFR-FLDRKEELALSHYREHLIIQSPDK-STASRKEFEETRVELPFSAEDS 325 (554)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhccCCCCc-chhHHHHHHHHHhcccccHHHH
Confidence 2445567778888888888888877774211 122334444444433322222111 1111344666666665444555
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhh--hhhhhhhhHHHHHhhHHHhhh
Q 007114 369 RATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVS--KADSRADSAEEKLIILSEANA 446 (617)
Q Consensus 369 k~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~Kvs--kAESRAe~AE~kc~~LtEtN~ 446 (617)
..++..+..|+.|+.+.+.|-.+-..+.. .|.-..+-.+...-+.+-.|-.++. +-|+ |..-.-+..+|.
T Consensus 326 ~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~---~q~~~~h~~ka~~~~~~~~l~~~~ec~~~e~-----e~~~~~~~r~~~ 397 (554)
T KOG4677|consen 326 AHIQDQYTLLRSQIIDIEAQDRHLESAGQ---TQIFRKHPRKASILNMPLVLTLFYECFYHET-----EAEGTFSSRVNL 397 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhH---HHHHHhhhHhhhhhhchHHHHHHHHHHHHHH-----HHhhhhhhhccc
Confidence 55788889999999998888665433322 2333344455555666666655543 4443 333344556665
Q ss_pred hhHHHHHhhHhHHHHHHHHHH-HHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 007114 447 GLTEEISFLRDRLECLEASLH-QAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQ 520 (617)
Q Consensus 447 eLneEL~fLksr~~~LE~~L~-qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L~~k~k 520 (617)
++. +|+-+=+..|. -+...|..+-.| +++...+---||..=.-+-|.|+.++...|+.||..+.
T Consensus 398 ~~q-------ski~dk~~el~kl~~~l~~r~~~~---s~~~l~~~~~qLt~tl~qkq~~le~v~~~~~~ln~~le 462 (554)
T KOG4677|consen 398 KKQ-------SKIPDKQYELTKLAARLKLRAWND---SVDALFTTKNQLTYTLKQKQIGLERVVEILHKLNAPLE 462 (554)
T ss_pred hhh-------ccCcchHHHHHHHHHHHHHHhhhh---hHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 543 22222222222 112222222222 33333333344444444456777888888888876554
No 201
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=61.09 E-value=2e+02 Score=31.21 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhhh
Q 007114 461 CLEASLHQAEETKLA 475 (617)
Q Consensus 461 ~LE~~L~qa~~~K~s 475 (617)
-||..+..+..-|++
T Consensus 180 rle~e~k~lq~k~~~ 194 (307)
T PF10481_consen 180 RLEAEVKALQAKKAS 194 (307)
T ss_pred hHHHHHHHHhcccCC
Confidence 355555555444433
No 202
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=60.65 E-value=1.7e+02 Score=28.43 Aligned_cols=99 Identities=24% Similarity=0.257 Sum_probs=58.7
Q ss_pred HhhhHHHHHHHHHhhhhhhhhhhhH-HHHHhhHHHhhhhhHHHHHhhHhHHHH----HHHHHH-HHHHHhhhhhHhhhhh
Q 007114 410 VKDMENLIQDLKLKVSKADSRADSA-EEKLIILSEANAGLTEEISFLRDRLEC----LEASLH-QAEETKLATAKDIGIR 483 (617)
Q Consensus 410 IsdMEnvIEeLK~KvskAESRAe~A-E~kc~~LtEtN~eLneEL~fLksr~~~----LE~~L~-qa~~~K~stakdI~~~ 483 (617)
=.++|+..-.++..+++.-+-.++. ......|...+..|..|+..++.++.. +...++ ..+..|...-.+....
T Consensus 46 k~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~ 125 (177)
T PF07798_consen 46 KSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQ 125 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4566666665555555543322222 234455666666777777777765443 222222 4556666666666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhh
Q 007114 484 TKVITNLVMQMAVERERLRQQISSL 508 (617)
Q Consensus 484 tK~i~dLv~QLa~ErErL~~Qissl 508 (617)
..-|.++-.++..|...|+.+|-++
T Consensus 126 ~~ki~e~~~ki~~ei~~lr~~iE~~ 150 (177)
T PF07798_consen 126 ELKIQELNNKIDTEIANLRTEIESL 150 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667888888888877777777653
No 203
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=60.02 E-value=1.8e+02 Score=28.58 Aligned_cols=152 Identities=20% Similarity=0.243 Sum_probs=70.1
Q ss_pred hcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhhhhhHhh
Q 007114 277 AENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEA-----QARADGAEVRC 351 (617)
Q Consensus 277 AENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~A-----Esra~~aeskc 351 (617)
+||.-.+|.-...++..-|....-.+-...-..-.+.-++. ..+..+.++..+...| +.-|..|-.+-
T Consensus 21 ~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~-------~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k 93 (221)
T PF04012_consen 21 AEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLD-------EAEEEAEKWEKQAELALAAGREDLAREALQRK 93 (221)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35555666666666666666555555544444444444444 3333333333333322 11112222222
Q ss_pred hhhHHhhHHHhhhhhhhhh----hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHH--H--hHhhhHHHHHHHHHh
Q 007114 352 KSLAETNIELNEDLKGSRA----TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLY--S--TVKDMENLIQDLKLK 423 (617)
Q Consensus 352 ~~LteTN~eL~~el~~Lk~----lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~--S--~IsdMEnvIEeLK~K 423 (617)
..+...=-.|...+..+.. +...+..|+.++.+...+....++...+.+.+..+-. . .+.+....++.+.++
T Consensus 94 ~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~k 173 (221)
T PF04012_consen 94 ADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEK 173 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHH
Confidence 2222222222222222222 4445555666666666555555554444333322211 1 145556667777777
Q ss_pred hhhhhhhhhhHH
Q 007114 424 VSKADSRADSAE 435 (617)
Q Consensus 424 vskAESRAe~AE 435 (617)
+...|.|++.+.
T Consensus 174 i~~~ea~a~a~~ 185 (221)
T PF04012_consen 174 IEEMEARAEASA 185 (221)
T ss_pred HHHHHHHHHHHH
Confidence 777776665543
No 204
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=59.31 E-value=1.1e+02 Score=26.76 Aligned_cols=61 Identities=20% Similarity=0.324 Sum_probs=44.3
Q ss_pred hhhhhhhhh-hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhh
Q 007114 362 NEDLKGSRA-TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSK 426 (617)
Q Consensus 362 ~~el~~Lk~-lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~Kvsk 426 (617)
+.++..++. +..-+.++|.+|.+ |..|+..++..-.+.+....+|..-...|.+++.+|..
T Consensus 34 ~~e~~~~~~eL~~~l~~ie~~L~D----L~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~~~~~i~~ 95 (97)
T PF09177_consen 34 SEELKWLKRELRNALQSIEWDLED----LEEAVRIVEKNPSKFNLSEEEISRRRQFVSAIRNQIKQ 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCHHHHT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHHHh
Confidence 334444444 77788889999887 45577777777777777888888888888888887754
No 205
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=59.20 E-value=49 Score=35.24 Aligned_cols=77 Identities=22% Similarity=0.302 Sum_probs=64.7
Q ss_pred HHHHHhhhhhhhHHHhHHHHHHHHHHHHhhhhhhhccccccchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 007114 101 LAFDLLSGLLDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTL 180 (617)
Q Consensus 101 leFDlL~gilDSEv~Ele~~~~tlq~~I~~~~~~i~s~~~~g~~f~~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~ 180 (617)
-.+++|+++||.-|.-+-..+..+..+|.+.++.|.+-.+ +. .+.+.-.++.+.++..+.+|.-...++|++
T Consensus 128 ~~~~vl~~Lld~iVd~~ad~lE~~~~~ld~ls~~if~~~~-~~-------~~~~~l~~i~~l~~~~~~~r~~l~~~~r~l 199 (316)
T PRK11085 128 NAYELLLDLFETKIEQLADEIENIYSDLEKLSRVIMEGHQ-GD-------EYDEALSTLAELEDIGWKVRLCLMDTQRAL 199 (316)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCC-ch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999976422 21 244555789999999999999999999999
Q ss_pred hhhhc
Q 007114 181 SALDR 185 (617)
Q Consensus 181 ~~~~~ 185 (617)
..+.+
T Consensus 200 ~~l~~ 204 (316)
T PRK11085 200 NFLVR 204 (316)
T ss_pred HHHhh
Confidence 88754
No 206
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=58.58 E-value=1.2e+02 Score=29.52 Aligned_cols=58 Identities=17% Similarity=0.352 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHH--HHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh
Q 007114 312 LRSKLDSLVKQVE-VKESVIASLRENLS--EAQARADGAEVRCKSLAETNIELNEDLKGSRA 370 (617)
Q Consensus 312 l~sKLkslEeqL~-~len~~e~LKe~i~--~AEsra~~aeskc~~LteTN~eL~~el~~Lk~ 370 (617)
|+..++.++..|+ ++..+..++|-++. +++.|...+.-+.+ +.++|.++..+++.|+.
T Consensus 85 L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~k-i~e~~~ki~~ei~~lr~ 145 (177)
T PF07798_consen 85 LQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELK-IQELNNKIDTEIANLRT 145 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 4444555555555 45555555555444 55555566655555 68888888888887776
No 207
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=58.07 E-value=71 Score=27.05 Aligned_cols=53 Identities=21% Similarity=0.389 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhH
Q 007114 309 EAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESD 386 (617)
Q Consensus 309 Esel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse 386 (617)
++||+.|- .+.+.|. ..|..-..+++|.+.|+.++..| ..++..|++++.++.
T Consensus 7 ~~EirakQ-~~~eEL~-------kvk~~n~~~e~kLqeaE~rn~eL-----------------~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 7 EAEIRAKQ-AIQEELT-------KVKSANLAFESKLQEAEKRNREL-----------------EQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHH-HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHhh
Confidence 34555554 4444443 34555556677777777777776 455666666665543
No 208
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=58.04 E-value=8.6 Score=41.50 Aligned_cols=103 Identities=19% Similarity=0.197 Sum_probs=10.5
Q ss_pred HHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 007114 268 MDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGA 347 (617)
Q Consensus 268 ~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~a 347 (617)
..+++|+..=|.+..-|.+....+..++..++.+|+....-=+++..-|.++...+..|+.-+.+|...|..--.....-
T Consensus 31 s~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h 110 (326)
T PF04582_consen 31 SPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDH 110 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhh
Confidence 34667777777777777777788888888888887777777777777777777777766666666666666666666666
Q ss_pred hHhhhhhHHhhHHHhhhhhhhhh
Q 007114 348 EVRCKSLAETNIELNEDLKGSRA 370 (617)
Q Consensus 348 eskc~~LteTN~eL~~el~~Lk~ 370 (617)
.+-+..|.-.=.-+...+.+||.
T Consensus 111 ~ssIS~Lqs~v~~lsTdvsNLks 133 (326)
T PF04582_consen 111 SSSISDLQSSVSALSTDVSNLKS 133 (326)
T ss_dssp -------HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhhhhhhhhhhhhhh
Confidence 66666665555556667777776
No 209
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=57.68 E-value=60 Score=27.80 Aligned_cols=63 Identities=24% Similarity=0.292 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHH----HhhhhhhhhhhhHHHHHHHHHHHHhHH
Q 007114 325 VKESVIASLRENLSEAQARADGAEVRCKSLAETNIE----LNEDLKGSRATSEKVESLERQLRESDI 387 (617)
Q Consensus 325 ~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~e----L~~el~~Lk~lsEKv~sLEkQLkEse~ 387 (617)
.|+..|..|...+..|..+.+..+..++-|..-+-. |.........|..++..|.++|.++..
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRA 68 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 478889999999999999999999999999776633 333333444477778888888776643
No 210
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=57.56 E-value=3.7e+02 Score=31.47 Aligned_cols=42 Identities=24% Similarity=0.216 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHH
Q 007114 374 KVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKL 422 (617)
Q Consensus 374 Kv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~ 422 (617)
|+.-+=-.|.+-..+|-.++...++..-+ |+|||.=|+-.+.
T Consensus 551 kaYK~La~lh~~c~~Li~~v~~tG~~~rE-------irdLe~qI~~e~~ 592 (594)
T PF05667_consen 551 KAYKLLASLHENCSQLIETVEETGTISRE-------IRDLEEQIDTESQ 592 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHhc
Confidence 33333344555555566666666654433 6666666655443
No 211
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=57.20 E-value=56 Score=28.35 Aligned_cols=63 Identities=22% Similarity=0.286 Sum_probs=49.4
Q ss_pred HhhhHHHHHHHHHhhhhhhhhhhh-HHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHH
Q 007114 410 VKDMENLIQDLKLKVSKADSRADS-AEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEET 472 (617)
Q Consensus 410 IsdMEnvIEeLK~KvskAESRAe~-AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~ 472 (617)
|..+..=.=+||-+++-.|-|.+. +..-...+-..|++|.-|+..|+..+..+.+.|.+|+.+
T Consensus 9 i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~ 72 (75)
T PF07989_consen 9 IDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKA 72 (75)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455678889988888884 466677788899999999999999999999999887653
No 212
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=56.45 E-value=2.5e+02 Score=29.21 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHhhh
Q 007114 493 QMAVERERLRQQISSLAMENKVMVVKLQQ 521 (617)
Q Consensus 493 QLa~ErErL~~Qissl~~eNk~L~~k~k~ 521 (617)
+...++..++.++..+...-..+...+..
T Consensus 243 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 243 EVLEELTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555666666665555555555554
No 213
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=56.44 E-value=4.3e+02 Score=31.84 Aligned_cols=196 Identities=21% Similarity=0.177 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHH--HHHHHHHHHHhHHHHH-----
Q 007114 318 SLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEK--VESLERQLRESDIQLQ----- 390 (617)
Q Consensus 318 slEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEK--v~sLEkQLkEse~QL~----- 390 (617)
-|+.||..+++....|-..+.+++.....+........+....|...++.|+.+... -.+.+...++-..+-.
T Consensus 269 KL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~~~ye 348 (717)
T PF09730_consen 269 KLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDGDYYE 348 (717)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccccchhh
Confidence 789999999999999999999999999999999999999999999988888874221 1111111111100000
Q ss_pred HHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHh-------HHHHHH
Q 007114 391 HAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRD-------RLECLE 463 (617)
Q Consensus 391 ~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLks-------r~~~LE 463 (617)
-=....+-.+-++....+++.++-.-+..||.++...+.++ ......+-..--.|.+.+..+.. ++..||
T Consensus 349 ~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~---~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE 425 (717)
T PF09730_consen 349 VDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERY---KQEKDRLESEVQNLKEKLMSLEKSSREDQERISELE 425 (717)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 00001122344555566666666666777777776666532 22333333444455555555554 666666
Q ss_pred HHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhh--hhHHHHHHhh
Q 007114 464 ASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAM--ENKVMVVKLQ 520 (617)
Q Consensus 464 ~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~--eNk~L~~k~k 520 (617)
+.|+.+.. +|.|-+.+-..-.|....++.|--.|..+|-+.-- -|+++-.-|+
T Consensus 426 ~ELr~l~~----~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~cNgeTPnRVmLD~yr 480 (717)
T PF09730_consen 426 KELRALSK----LAGESQGSLNSAQDELVTFSEELAQLYHHVCMCNGETPNRVMLDYYR 480 (717)
T ss_pred HHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCccHHHHHHH
Confidence 66665543 33444444444555566666666677766655321 3555555555
No 214
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=56.30 E-value=2.5e+02 Score=29.00 Aligned_cols=20 Identities=35% Similarity=0.506 Sum_probs=12.3
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHhhh
Q 007114 497 ERERLRQQISSLAMENKVMVVKLQQ 521 (617)
Q Consensus 497 ErErL~~Qissl~~eNk~L~~k~k~ 521 (617)
|.+|+ +.+.+|+-|-.+|+.
T Consensus 174 EeeR~-----t~~EKnk~lq~QL~~ 193 (246)
T PF00769_consen 174 EEERV-----TYAEKNKRLQEQLKE 193 (246)
T ss_dssp GGC--------HHHH-HHHHHHHHH
T ss_pred HHHHH-----HHHHhhHHHHHHHHH
Confidence 66664 778888888888874
No 215
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=55.99 E-value=3.9e+02 Score=31.27 Aligned_cols=67 Identities=19% Similarity=0.339 Sum_probs=30.3
Q ss_pred HHHHhhHhHHHHHHHHHH-------HH--HHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 007114 450 EEISFLRDRLECLEASLH-------QA--EETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQ 520 (617)
Q Consensus 450 eEL~fLksr~~~LE~~L~-------qa--~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L~~k~k 520 (617)
+++..+|.++..++..++ ++ +-+++.....-..=|+-|.++|...- +-+..|..+-.+.+.|..-++
T Consensus 447 ~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~----KQk~eI~KIl~DTr~lQkeiN 522 (594)
T PF05667_consen 447 QEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIR----KQKEEIEKILSDTRELQKEIN 522 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555554444 22 22222222233344566777766542 222334444444444444333
No 216
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=55.45 E-value=1.3e+02 Score=25.36 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhh
Q 007114 372 SEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADS 429 (617)
Q Consensus 372 sEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAES 429 (617)
..++..|+..+.++..++.... . +.+-........-+..++..|..++..+..++.
T Consensus 18 ~~~l~~L~~~~~~~~~~~~~~~-~-~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~ 73 (123)
T PF02050_consen 18 EEQLEQLQQERQEYQEQLSESQ-Q-GVSVAQLRNYQRYISALEQAIQQQQQELERLEQ 73 (123)
T ss_dssp HHHHHHHHHHHHHHHHT------S-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcc-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544443333 2 333333444444455555555555555554443
No 217
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=55.28 E-value=4.7e+02 Score=31.96 Aligned_cols=161 Identities=25% Similarity=0.266 Sum_probs=88.3
Q ss_pred hhHHHHHHhHHHHhhh----cccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------hhhhh
Q 007114 286 GISKELLGRLQIVLFN----MNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQA--------------RADGA 347 (617)
Q Consensus 286 g~skel~gkLq~~qf~----L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEs--------------ra~~a 347 (617)
+.+.+++.+++.-+.. +-....|+.++..-+.-+-.-+..-+..+..|+.++-.+.. |--++
T Consensus 3 ~e~qel~~~~~~e~~~~~~q~a~~ttr~~e~e~~~~~ar~~~~~a~e~~~~lq~~~~e~~aqk~d~E~ritt~e~rflna 82 (916)
T KOG0249|consen 3 IELQELLEKQQHEQAQSKEQLAPLTTRVPELEHSLPEARKDLIKAEEMNTKLQRDIREAMAQKEDMEERITTLEKRFLNA 82 (916)
T ss_pred cchHHHHHHHHHHHhhcccccCCCcCCcHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHhhhcccccccchHHHHHHhc
Confidence 3455666666554433 22344566666655554433333334445555555555544 44444
Q ss_pred hHhhhhhHHhhHHHhhhhhh----hhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHh
Q 007114 348 EVRCKSLAETNIELNEDLKG----SRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLK 423 (617)
Q Consensus 348 eskc~~LteTN~eL~~el~~----Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~K 423 (617)
-.+..-...-|-+|..+|.+ +..+.+|+.+|-++|.-.+-+++.+-+ +++.-+ .|.-...=-..
T Consensus 83 qre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpe-----------veael~qr~~a 150 (916)
T KOG0249|consen 83 QRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPE-----------VEAELAQRNAA 150 (916)
T ss_pred cCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhh-----------hHHHHHHHHHH
Confidence 44444444556666666554 333777777777777777777766666 443211 11111111123
Q ss_pred hhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhH
Q 007114 424 VSKADSRADSAEEKLIILSEANAGLTEEISFLRDR 458 (617)
Q Consensus 424 vskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr 458 (617)
..+||-+-.+.+.....|-+.|-++|.||--.+.|
T Consensus 151 l~~aee~~~~~eer~~kl~~~~qe~naeL~rarqr 185 (916)
T KOG0249|consen 151 LTKAEEHSGNIEERTRKLEEQLEELNAELQRARQR 185 (916)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777777777777777776664
No 218
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=55.20 E-value=4.7e+02 Score=31.90 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=24.4
Q ss_pred hhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhH
Q 007114 454 FLRDRLECLEASLHQAEETKLATAKDIGIRTK 485 (617)
Q Consensus 454 fLksr~~~LE~~L~qa~~~K~stakdI~~~tK 485 (617)
-+|+..+.|+..|..|+..-.+....++-.|.
T Consensus 609 ~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTr 640 (961)
T KOG4673|consen 609 MFRGEIEDLQRRLQAAERRCEELIQQVPETTR 640 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 46667888888888888887777777777664
No 219
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=55.08 E-value=2.1e+02 Score=33.90 Aligned_cols=21 Identities=33% Similarity=0.324 Sum_probs=13.2
Q ss_pred hhHHHHHhhHhHHHHHHHHHH
Q 007114 447 GLTEEISFLRDRLECLEASLH 467 (617)
Q Consensus 447 eLneEL~fLksr~~~LE~~L~ 467 (617)
..+.|+..+..+...|++.|.
T Consensus 471 ~~~rei~~~~~~I~~L~~~L~ 491 (652)
T COG2433 471 RKDREIRARDRRIERLEKELE 491 (652)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666665
No 220
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=54.68 E-value=2.5e+02 Score=28.69 Aligned_cols=160 Identities=17% Similarity=0.278 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh-----------------------------hhHHH
Q 007114 325 VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA-----------------------------TSEKV 375 (617)
Q Consensus 325 ~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~-----------------------------lsEKv 375 (617)
+|+..+.-++..+..+|.+......+|..|..+|.++..-++++.. +..-+
T Consensus 6 d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL 85 (207)
T PF05010_consen 6 DLDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADL 85 (207)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHH
Confidence 5677777777777777777777777777777777777777766665 33345
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhh----hhhhhhhhhHHHHHhhHHHhhhhhHHH
Q 007114 376 ESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKV----SKADSRADSAEEKLIILSEANAGLTEE 451 (617)
Q Consensus 376 ~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~Kv----skAESRAe~AE~kc~~LtEtN~eLneE 451 (617)
+++|+-..+.-.+....+...+.++.--+.|...+.++..-|.....++ .||+...+.|=.+...+- .+...|
T Consensus 86 ~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~---~~~~~e 162 (207)
T PF05010_consen 86 NSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVR---SKHQAE 162 (207)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHH
Confidence 6777777766667777777777776666677777878777776665554 356666666655554443 333445
Q ss_pred HHhhHh-------HHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHH
Q 007114 452 ISFLRD-------RLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQM 494 (617)
Q Consensus 452 L~fLks-------r~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QL 494 (617)
+..|+- ++.+|+.+|.|- .+++.=-|++..||+.+.
T Consensus 163 ~~aLqa~lkk~e~~~~SLe~~LeQK-------~kEn~ELtkICDeLI~k~ 205 (207)
T PF05010_consen 163 LLALQASLKKEEMKVQSLEESLEQK-------TKENEELTKICDELISKM 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence 555544 677777777654 455566688888888764
No 221
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=54.51 E-value=2.6e+02 Score=28.79 Aligned_cols=137 Identities=17% Similarity=0.162 Sum_probs=75.9
Q ss_pred HhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhhhHhhhhhHHhhHHHhhhhhhhhh--
Q 007114 298 VLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQAR-----ADGAEVRCKSLAETNIELNEDLKGSRA-- 370 (617)
Q Consensus 298 ~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsr-----a~~aeskc~~LteTN~eL~~el~~Lk~-- 370 (617)
++.+|..+.+-=..++.--+.+|.++..+....+++..+...|=.. |..+-.+...|+.+=-.+...+..+.+
T Consensus 36 ~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~ 115 (225)
T COG1842 36 MESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQV 115 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444466777776666677666665554333 333444555566655556666666555
Q ss_pred --hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHH--HHhHHHhHh--hhHHHHHHHHHhhhhhhhhhhhH
Q 007114 371 --TSEKVESLERQLRESDIQLQHAVAYAEASLEK--QNMLYSTVK--DMENLIQDLKLKVSKADSRADSA 434 (617)
Q Consensus 371 --lsEKv~sLEkQLkEse~QL~~A~ASaea~~ee--qn~l~S~Is--dMEnvIEeLK~KvskAESRAe~A 434 (617)
+...+..||.++.+++.+....+|..-+-+.. .+-....++ +=....+.+++|+...|.||+-+
T Consensus 116 ~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer~e~kiee~ea~a~~~ 185 (225)
T COG1842 116 EKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKIEEREARAEAA 185 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 55667788888888888876666654443322 222222222 22333456677777776655544
No 222
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=54.36 E-value=4.3e+02 Score=31.19 Aligned_cols=140 Identities=17% Similarity=0.127 Sum_probs=98.1
Q ss_pred HhHHHHHHHHHHHHHhhcchHHHH---hhhHHHHHHhHHHH--hhhcc------cchhchhhHHHHHH------------
Q 007114 261 LYTEEEAMDACERLFEAENSAEVL---KGISKELLGRLQIV--LFNMN------GSVQREAGLRSKLD------------ 317 (617)
Q Consensus 261 ~~lEE~~~~~~er~~EAENa~EvL---~g~skel~gkLq~~--qf~L~------as~~REsel~sKLk------------ 317 (617)
..++.....+|++=+++++..+-+ .=..+.++.||-.. ++..+ ++.--..++++..+
T Consensus 353 ~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~ 432 (581)
T KOG0995|consen 353 SELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISE 432 (581)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHH
Confidence 345677788888888888865544 34566667766654 44444 45555667777766
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhh----hhh-------hh-hhHHH
Q 007114 318 ----------SLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDL----KGS-------RA-TSEKV 375 (617)
Q Consensus 318 ----------slEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el----~~L-------k~-lsEKv 375 (617)
-|++.+..+.+.|++++.-+..-+.++.-++++|++.-+++-++..+- ..| +- +....
T Consensus 433 ~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m 512 (581)
T KOG0995|consen 433 ELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSM 512 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233378888888888888999999999999999999887765432 222 22 45566
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHH
Q 007114 376 ESLERQLRESDIQLQHAVAYAEASL 400 (617)
Q Consensus 376 ~sLEkQLkEse~QL~~A~ASaea~~ 400 (617)
..++..++..+..++.++++.+...
T Consensus 513 ~~a~~~v~s~e~el~~~~~~~~eer 537 (581)
T KOG0995|consen 513 KEAEELVKSIELELDRMVATGEEER 537 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888999999988888876543
No 223
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=53.83 E-value=72 Score=33.69 Aligned_cols=73 Identities=25% Similarity=0.279 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHh
Q 007114 310 AGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRES 385 (617)
Q Consensus 310 sel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEs 385 (617)
++++.-+..+.+.|..+...++.|.+...+-|+..+.-.-+.+.|..-|.+|+++++.|-+ +|.-|++.+.+.
T Consensus 131 ~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~---ev~~L~~r~~EL 203 (290)
T COG4026 131 MDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPG---EVYDLKKRWDEL 203 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh---HHHHHHHHHHHh
Confidence 3566666666666667777777888888888888888888889999999999998887765 334444444433
No 224
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=53.78 E-value=4e+02 Score=30.63 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=11.6
Q ss_pred HHhhHHHhhhhhHHHHHhh
Q 007114 437 KLIILSEANAGLTEEISFL 455 (617)
Q Consensus 437 kc~~LtEtN~eLneEL~fL 455 (617)
+...|.+.|.++..|-..|
T Consensus 173 qi~~L~~~n~~i~~ea~nL 191 (475)
T PRK10361 173 EIRNLQQLNAQMAQEAINL 191 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666666666665443
No 225
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=53.08 E-value=3.2e+02 Score=29.32 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhh
Q 007114 372 SEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADS 429 (617)
Q Consensus 372 sEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAES 429 (617)
.+++...|+.+++...+.. +...++..+.-+-..|...|..+|+||-+...
T Consensus 213 ~EeL~~~Eke~~e~~~~i~-------e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~ 263 (269)
T PF05278_consen 213 EEELKQKEKEVKEIKERIT-------EMKGRLGELEMESTRLSKTIKSIKSKVEKFHG 263 (269)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444444555555444443 33333444444556666677777777776643
No 226
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=52.99 E-value=37 Score=36.78 Aligned_cols=60 Identities=18% Similarity=0.391 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHh
Q 007114 371 TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEA 444 (617)
Q Consensus 371 lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEt 444 (617)
+..++..+|+++.+.+-.+..... .+.+++.-|..+..++...|.|+...=-+..++.|.
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~--------------~~~~~~k~i~~l~~kl~DlEnrsRRnNiRIiGiPEg 201 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQ--------------AIKELEKRIKKLEDKLDDLENRSRRNNIRIIGIPEG 201 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhh--------------HHHHHHHHHHHHHHHHHHHHhhccCCceeEEecCCC
Confidence 445556666665555555444333 344444556666666666666655444555666664
No 227
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=52.86 E-value=24 Score=38.26 Aligned_cols=53 Identities=17% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh
Q 007114 318 SLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA 370 (617)
Q Consensus 318 slEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~ 370 (617)
.+-+.|-.||..+.+|-+.|....++...-++.|.-++.+=-+++.+|+.|..
T Consensus 32 ~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLss 84 (326)
T PF04582_consen 32 PIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSS 84 (326)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666777777777777777777777777776666666666666554
No 228
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=52.72 E-value=1.4e+02 Score=25.08 Aligned_cols=67 Identities=15% Similarity=0.209 Sum_probs=52.6
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhH
Q 007114 368 SRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSA 434 (617)
Q Consensus 368 Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~A 434 (617)
+.....-+..|+..+.....++..+..-.+.....+-......+-|+.+++--......++.|.+..
T Consensus 47 ~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~~~~~~~~~~~r~Eq~ 113 (123)
T PF02050_consen 47 LRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLKERRREEYQQEEERREQK 113 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3336667778888888888888888888888887888888888899998888888888887776654
No 229
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=52.11 E-value=4.6e+02 Score=30.86 Aligned_cols=212 Identities=19% Similarity=0.222 Sum_probs=124.3
Q ss_pred HHhHHHHHHHHHHHHhhhhhhhccccccchhhHHHHHhhhhHHHHHHHHHH-------------------HHHHHHHhhH
Q 007114 114 LRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRD-------------------QILEIKKQSA 174 (617)
Q Consensus 114 v~Ele~~~~tlq~~I~~~~~~i~s~~~~g~~f~~~~~KL~~~~~sLkQ~~e-------------------~i~eik~qsa 174 (617)
++..-..-.-|+.+|-.-+| ..|++.-.++++|...+.-|.|+.. +...||...-
T Consensus 141 i~~~~ely~elr~~vl~n~~------~~Ge~~~~lEk~Le~i~~~l~qf~~lt~~Gd~ieA~evl~~~ee~~~~L~~~~e 214 (570)
T COG4477 141 IDHVLELYEELRRDVLANRH------QYGEAAPELEKKLENIEEELSQFVELTSSGDYIEAREVLEEAEEHMIALRSIME 214 (570)
T ss_pred HHHHHHHHHHHHHHHHHhhh------hhhhhhHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555666655555 3577777788888888887777643 2333333332
Q ss_pred HHHHHHhhhhccCCCCCC-------CCCCCcccccccchhhhhhhccHHHHHHHHHHHHHHhhhhhhhHHHhHH------
Q 007114 175 KFQRTLSALDREGNWISD-------KDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLEKSLAREMDLEKKLTE------ 241 (617)
Q Consensus 175 ~fqr~~~~~~~~~~~~~~-------~~~~~~ed~~~~~~~~~~~mqt~eQqR~iLrMLEkSlA~e~dLEkkL~e------ 241 (617)
.-...|..+.. +.|+. -.--..+++-+.+++....||.-.-|+- =.+++=..+||...=.+
T Consensus 215 ~IP~L~~e~~~--~lP~ql~~Lk~Gyr~m~~~gY~l~~~~id~~~~~L~~~l~----~~~~~l~~Leld~aeeel~~I~e 288 (570)
T COG4477 215 RIPSLLAELQT--ELPGQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKEQLV----ENSELLTQLELDEAEEELGLIQE 288 (570)
T ss_pred HHHHHHHHHHh--hchHHHHHHHHHHHHHHHccCCcccccHHHHHHHHHHHHH----HHHhHHHHhhhhhHHHHHHHHHH
Confidence 22222222211 11110 0001113344557777766665443332 22344455555433222
Q ss_pred --------------HHHHHH----HHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHH---HHHhHHHHhh
Q 007114 242 --------------SRQVEE----ALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKE---LLGRLQIVLF 300 (617)
Q Consensus 242 --------------s~~~ee----eLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~ske---l~gkLq~~qf 300 (617)
+++..+ .|...|.++......|=+.+..+...+.=+++-+...++..++ +..-+..+--
T Consensus 289 ~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~ 368 (570)
T COG4477 289 KIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILE 368 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 2567788888888888888899999888888888887776554 4556677777
Q ss_pred hcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007114 301 NMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENL 337 (617)
Q Consensus 301 ~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i 337 (617)
++.+..++=|.+.+.|++++++|.+.++-..++-+.+
T Consensus 369 ~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L 405 (570)
T COG4477 369 NIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHL 405 (570)
T ss_pred HhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 8888888889999999999999986555555444433
No 230
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=51.74 E-value=6e+02 Score=32.14 Aligned_cols=167 Identities=17% Similarity=0.209 Sum_probs=91.7
Q ss_pred HHHHHHHHHHhh--HHHHHHHhhhhccCCCCCCCCCCCcccccccchhhhhhhccHHHHHH--HHHHHHHHhhhhhhhHH
Q 007114 162 SRDQILEIKKQS--AKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRH--FLRMLEKSLAREMDLEK 237 (617)
Q Consensus 162 ~~e~i~eik~qs--a~fqr~~~~~~~~~~~~~~~~~~~~ed~~~~~~~~~~~mqt~eQqR~--iLrMLEkSlA~e~dLEk 237 (617)
+.+|+-..|+|+ +.|+..|--|+..-++ .+.. ...-.-||++=+-. -|+|--.+|-.-|+|.+
T Consensus 283 LeeQLq~lrarse~~tleseiiqlkqkl~d-----------m~~e--rdtdr~kteeL~eEnstLq~q~eqL~~~~ellq 349 (1195)
T KOG4643|consen 283 LEEQLQKLRARSEGATLESEIIQLKQKLDD-----------MRSE--RDTDRHKTEELHEENSTLQVQKEQLDGQMELLQ 349 (1195)
T ss_pred HHHHHHHHHhccccCChHHHHHHHHHHHHH-----------HHHh--hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhh
Confidence 578899999999 8898888666431111 0000 00011122221111 14444455666667776
Q ss_pred HhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHH
Q 007114 238 KLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLD 317 (617)
Q Consensus 238 kL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLk 317 (617)
..++..+.+. +.+.+-.+ .|.- -|.+.++=--.-+.|++.+++.. ++-+.+....++..-.+
T Consensus 350 ~~se~~E~en---~Sl~~e~e---qLts------~ralkllLEnrrlt~tleelqss------s~Ee~~SK~leleke~K 411 (1195)
T KOG4643|consen 350 IFSENEELEN---ESLQVENE---QLTS------DRALKLLLENRRLTGTLEELQSS------SYEELISKHLELEKEHK 411 (1195)
T ss_pred hhhcchhhhh---hhHHHHHH---Hhhh------HHHHHHHHHhHHHHHHHHHHhhh------hHHHHHHHHHHHHHHhH
Confidence 6654433322 12211111 1111 22222222223455666655544 56677777888777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhH
Q 007114 318 SLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNI 359 (617)
Q Consensus 318 slEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~ 359 (617)
-|+..-+.||+-|..++....+-|...-..-.+.+.|.+++.
T Consensus 412 nLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~ 453 (1195)
T KOG4643|consen 412 NLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETS 453 (1195)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888888777777766666666655543
No 231
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=51.65 E-value=3.2e+02 Score=29.01 Aligned_cols=108 Identities=19% Similarity=0.209 Sum_probs=64.7
Q ss_pred hhhhhhhhhhhHHHHHHHH-HHHHhHHHHHHHHHhHHHHHHHHHh-HHHhHhhhHHHHHHHHHhhhhhhh-hhhh-HHHH
Q 007114 362 NEDLKGSRATSEKVESLER-QLRESDIQLQHAVAYAEASLEKQNM-LYSTVKDMENLIQDLKLKVSKADS-RADS-AEEK 437 (617)
Q Consensus 362 ~~el~~Lk~lsEKv~sLEk-QLkEse~QL~~A~ASaea~~eeqn~-l~S~IsdMEnvIEeLK~KvskAES-RAe~-AE~k 437 (617)
++++++|..-.|+=.-.=. |+.+..-|++..+.+...-...++. ..-.+..|++-+..=+.++..+=+ ++.. -..-
T Consensus 101 ~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~ 180 (258)
T PF15397_consen 101 QEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPA 180 (258)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 5567777774444333333 5555666666666665543334333 334467788888777777766321 1211 2334
Q ss_pred HhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHH
Q 007114 438 LIILSEANAGLTEEISFLRDRLECLEASLHQA 469 (617)
Q Consensus 438 c~~LtEtN~eLneEL~fLksr~~~LE~~L~qa 469 (617)
....+-.|.-+..|+.-.|.-.+.|+....++
T Consensus 181 l~~~~~~N~~m~kei~~~re~i~el~e~I~~L 212 (258)
T PF15397_consen 181 LLQRTLENQVMQKEIVQFREEIDELEEEIPQL 212 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667778888888888888777777776633
No 232
>PF14992 TMCO5: TMCO5 family
Probab=51.65 E-value=3.4e+02 Score=29.25 Aligned_cols=38 Identities=16% Similarity=0.173 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHH
Q 007114 319 LVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAE 356 (617)
Q Consensus 319 lEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~Lte 356 (617)
+|+.+..+.-.|..+-.+|..+|.-.++-+.+.++..+
T Consensus 9 le~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~ 46 (280)
T PF14992_consen 9 LEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDH 46 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45556667778999999999999999999998887744
No 233
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=51.59 E-value=4.9e+02 Score=31.01 Aligned_cols=89 Identities=21% Similarity=0.258 Sum_probs=45.8
Q ss_pred hHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhh
Q 007114 348 EVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKA 427 (617)
Q Consensus 348 eskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskA 427 (617)
..+++.|.....-.+++ +..++.++..|+..++..+.+...-....+..... ....+++++.....|+++. +
T Consensus 226 ~~~~~~l~~~~~~~~~~---i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~L~~~~~~l~~~~--~ 297 (670)
T KOG0239|consen 226 RRNIKPLEGLESTIKKK---IQALQQELEELKAELKELNDQVSLLTREVQEALKE---SNTLQSDLESLEENLVEKK--K 297 (670)
T ss_pred HHhhhhhhhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH--H
Confidence 33444444444444444 22334445555555555554444443333333322 2223666666666666655 3
Q ss_pred hhhhhhHHHHHhhHHHhhhhhHHHHHhhHh
Q 007114 428 DSRADSAEEKLIILSEANAGLTEEISFLRD 457 (617)
Q Consensus 428 ESRAe~AE~kc~~LtEtN~eLneEL~fLks 457 (617)
| -+.|-+|--++-.||+
T Consensus 298 e-------------~~~r~kL~N~i~eLkG 314 (670)
T KOG0239|consen 298 E-------------KEERRKLHNEILELKG 314 (670)
T ss_pred H-------------HHHHHHHHHHHHHhhc
Confidence 3 2567788888888888
No 234
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=51.14 E-value=6.3e+02 Score=32.21 Aligned_cols=38 Identities=11% Similarity=0.147 Sum_probs=27.0
Q ss_pred hhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 007114 143 KASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTL 180 (617)
Q Consensus 143 ~~f~~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~ 180 (617)
..||.-..+=..-...+.....+|.+|+.+.+....-+
T Consensus 728 a~~IG~~aR~~~R~~ri~el~~~IaeL~~~i~~l~~~l 765 (1353)
T TIGR02680 728 AEYIGAAARERARLRRIAELDARLAAVDDELAELAREL 765 (1353)
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777777777777777777776666655
No 235
>PF13166 AAA_13: AAA domain
Probab=50.82 E-value=4.3e+02 Score=30.19 Aligned_cols=90 Identities=21% Similarity=0.294 Sum_probs=42.0
Q ss_pred HhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhh
Q 007114 404 NMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIR 483 (617)
Q Consensus 404 n~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~ 483 (617)
..+...+..+...|++...++.+...+...+..+....-- .++...+..+..+...++..+..+...+...-..|...
T Consensus 366 ~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 443 (712)
T PF13166_consen 366 DELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLHLI--AKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKI 443 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666655555544444444332211 12333444444444455544544444443333444444
Q ss_pred hHHHHHHHHHHH
Q 007114 484 TKVITNLVMQMA 495 (617)
Q Consensus 484 tK~i~dLv~QLa 495 (617)
++-|.+|-.++.
T Consensus 444 ~~~i~~l~~~~~ 455 (712)
T PF13166_consen 444 EKEIKELEAQLK 455 (712)
T ss_pred HHHHHHHHHHHh
Confidence 444444444443
No 236
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=50.23 E-value=14 Score=26.18 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=16.8
Q ss_pred HHHHhhHhHHHHHHHHHHH
Q 007114 450 EEISFLRDRLECLEASLHQ 468 (617)
Q Consensus 450 eEL~fLksr~~~LE~~L~q 468 (617)
+|++.||+|+.+||.+|..
T Consensus 1 ~E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 1 REMNRLRNRISDLERQLSE 19 (23)
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 4789999999999999964
No 237
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=49.21 E-value=2.2e+02 Score=26.28 Aligned_cols=22 Identities=41% Similarity=0.504 Sum_probs=10.3
Q ss_pred hHHHHHhhHhHHHHHHHHHHHH
Q 007114 448 LTEEISFLRDRLECLEASLHQA 469 (617)
Q Consensus 448 LneEL~fLksr~~~LE~~L~qa 469 (617)
+.+=+.||+.|...|++++..+
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l 113 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKL 113 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555554444433
No 238
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=49.19 E-value=3.6e+02 Score=31.69 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=28.7
Q ss_pred HHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhh
Q 007114 244 QVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKG 286 (617)
Q Consensus 244 ~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g 286 (617)
.++..+..|...+.+-..|+++-...+..++-.+|++.+-++-
T Consensus 253 Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~ 295 (726)
T PRK09841 253 YLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQ 295 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666677777777777777777777666664
No 239
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=49.15 E-value=1.8e+02 Score=31.11 Aligned_cols=66 Identities=17% Similarity=0.229 Sum_probs=37.5
Q ss_pred hHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHH
Q 007114 385 SDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEA 464 (617)
Q Consensus 385 se~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~ 464 (617)
.+-.+.......+..++++....-+++++..-|.+.+.++..+| .+. ..|++-+.|++|||.....
T Consensus 198 ~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~-------~~~-------~~l~k~~~~~~sKV~kf~~ 263 (269)
T PF05278_consen 198 KDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELE-------MES-------TRLSKTIKSIKSKVEKFHG 263 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH-------HHHHHHHHHHHHHHHHhcC
Confidence 33334444444444444444444445555555666666555554 233 4567789999999887643
No 240
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=49.11 E-value=1.9e+02 Score=25.46 Aligned_cols=82 Identities=17% Similarity=0.187 Sum_probs=56.3
Q ss_pred HHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhh---hhhHhhhh
Q 007114 406 LYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKL---ATAKDIGI 482 (617)
Q Consensus 406 l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~---stakdI~~ 482 (617)
..+.|..|+.++.....-....- ....+..+--+|...|..++--+++|++.+..++.--. -+..+|.-
T Consensus 10 v~~sl~~l~~~~~~~~~~~~~~~--------~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~ 81 (97)
T PF09177_consen 10 VQSSLDRLESLYRRWQRLRSDTS--------SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISR 81 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCC--------CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHH
Confidence 44556666666665554433332 34456667788888888888899999999886554432 37889999
Q ss_pred hhHHHHHHHHHHH
Q 007114 483 RTKVITNLVMQMA 495 (617)
Q Consensus 483 ~tK~i~dLv~QLa 495 (617)
|...|.++..|+.
T Consensus 82 Rr~fv~~~~~~i~ 94 (97)
T PF09177_consen 82 RRQFVSAIRNQIK 94 (97)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877764
No 241
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=49.06 E-value=98 Score=26.95 Aligned_cols=43 Identities=21% Similarity=0.348 Sum_probs=32.3
Q ss_pred HHHHHHhhhhhh---hHHHhHHHHHHHHHHHHhhhhhhhccccccc
Q 007114 100 ALAFDLLSGLLD---SELRELENFITTLEADFVKAHELISSYTELG 142 (617)
Q Consensus 100 aleFDlL~gilD---SEv~Ele~~~~tlq~~I~~~~~~i~s~~~~g 142 (617)
+.-||+++.|-+ .+.+.++.-++.|..-|..||.-|.+-....
T Consensus 6 P~i~~~l~~~~~d~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~ 51 (83)
T PF07544_consen 6 PLIFDILHQISKDPPLSSKDLDTATGSLKHKLQKARAAIRELPGID 51 (83)
T ss_pred chHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 345777777765 3678889889999888888888777665544
No 242
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=48.87 E-value=2e+02 Score=30.89 Aligned_cols=80 Identities=19% Similarity=0.285 Sum_probs=54.4
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHH
Q 007114 415 NLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQM 494 (617)
Q Consensus 415 nvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QL 494 (617)
+-+.+||..+...|.+-.-|=.--.+|--...-|.-++..|++++..||..+.++.-.--.-.+++.-.+..+..|.-++
T Consensus 77 ~s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~ 156 (302)
T PF09738_consen 77 ASLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREEL 156 (302)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777666656667777777777788889999999999999998776654444445544444444443333
No 243
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=48.84 E-value=3.6e+02 Score=31.60 Aligned_cols=69 Identities=19% Similarity=0.151 Sum_probs=52.5
Q ss_pred HHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 007114 436 EKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSL 508 (617)
Q Consensus 436 ~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl 508 (617)
.....+|+.|..+-+|++.|-+.+.++.++++..-++|..-..=++ ..+|--.|+..|-+.++.|-.-.
T Consensus 219 eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq----~~~da~~ql~aE~~EleDkyAE~ 287 (596)
T KOG4360|consen 219 EELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQ----AYKDAQRQLTAELEELEDKYAEC 287 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHH
Confidence 3566778888999999999999999999999998888876554444 45566667777777777764433
No 244
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=48.57 E-value=1.3e+02 Score=31.17 Aligned_cols=67 Identities=24% Similarity=0.242 Sum_probs=51.8
Q ss_pred HHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 007114 441 LSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAME 511 (617)
Q Consensus 441 LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~e 511 (617)
|.+.|..+++++.-|+.+++..+.+|..++..+..--|+. .-+.+=--.|..|-++||.||-+-+++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~----e~~~~EydrLlee~~~Lq~~i~~~~~k 215 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQS----EGLQDEYDRLLEEYSKLQEQIESGGKK 215 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHcccHHHHHHHHHHHHHHHHhccCCC
Confidence 7788999999999999999999999998888776655544 334444567777888888888765543
No 245
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=48.02 E-value=2.4e+02 Score=27.76 Aligned_cols=55 Identities=22% Similarity=0.270 Sum_probs=31.8
Q ss_pred HhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHH
Q 007114 404 NMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLH 467 (617)
Q Consensus 404 n~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~ 467 (617)
..+..-+.++..+++.+..++...|.+. ....+-+.-.+|..+|..+..+.+.+.
T Consensus 114 ~il~~~~~~~~~~l~~l~~~l~~le~~~---------~~~~~~~~~~~l~~l~~~l~~l~~~l~ 168 (292)
T PF01544_consen 114 AILDEIVDDYFEVLEELEDELDELEDEL---------DDRPSNELLRELFDLRRELSRLRRSLS 168 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------THTTTHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc---------ccccchhhHHHHHHHHHHHHHHHHHhh
Confidence 3455556667777777777776666533 444455555555555555555544444
No 246
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=47.77 E-value=49 Score=26.94 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=22.3
Q ss_pred HHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHH
Q 007114 436 EKLIILSEANAGLTEEISFLRDRLECLEASLH 467 (617)
Q Consensus 436 ~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~ 467 (617)
.++..|+..|..|..++..|+..+..|...+|
T Consensus 33 ~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 33 EKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 46666667777777777777777777766543
No 247
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=47.68 E-value=2.5e+02 Score=26.77 Aligned_cols=35 Identities=34% Similarity=0.431 Sum_probs=25.8
Q ss_pred HHhhH--HHhhhhhHHHHHhhHhHHHHHHHHHHHHHH
Q 007114 437 KLIIL--SEANAGLTEEISFLRDRLECLEASLHQAEE 471 (617)
Q Consensus 437 kc~~L--tEtN~eLneEL~fLksr~~~LE~~L~qa~~ 471 (617)
+...| +-||.+|...+..|+.....|+.+|..+..
T Consensus 101 eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 101 ELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444 357788888888888888888888876664
No 248
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=47.55 E-value=1.9e+02 Score=25.08 Aligned_cols=44 Identities=30% Similarity=0.303 Sum_probs=26.6
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHH
Q 007114 417 IQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLH 467 (617)
Q Consensus 417 IEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~ 467 (617)
|++||.+..... ..-..|-+.|-+|.+|-+...+|+..|=.++.
T Consensus 27 ~eeLke~n~~L~-------~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 27 NEELKEKNNELK-------EENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 555555444333 45566667777777777777777766655443
No 249
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=47.40 E-value=2.7e+02 Score=26.78 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007114 312 LRSKLDSLVKQVEVKES 328 (617)
Q Consensus 312 l~sKLkslEeqL~~len 328 (617)
++.++..++.||+.++.
T Consensus 18 lk~~l~k~~~ql~~ke~ 34 (177)
T PF13870_consen 18 LKHQLAKLEEQLRQKEE 34 (177)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455566666663333
No 250
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=47.38 E-value=2.1e+02 Score=30.85 Aligned_cols=99 Identities=22% Similarity=0.262 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhH-HHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHH
Q 007114 374 KVESLERQLRESD-IQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEI 452 (617)
Q Consensus 374 Kv~sLEkQLkEse-~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL 452 (617)
.+.-+|++|..+. +.=.+|.++-.|..+ =+|.-.||.+|--|-=+|.+|..-|
T Consensus 187 ~l~dkekEl~sfK~sEeeNar~V~kAnsV--------------------------ldRmk~aEaqvneLEvsN~DLsaKL 240 (311)
T PF04642_consen 187 QLSDKEKELESFKRSEEENARAVEKANSV--------------------------LDRMKEAEAQVNELEVSNIDLSAKL 240 (311)
T ss_pred ccccHHHHHHHHhhhhhhhHHHHHHHHHH--------------------------HHHHHHHHhhhhheecccHHHHHhh
Confidence 4445555665555 444555555555442 1345556778888989999998877
Q ss_pred H--------------hhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 007114 453 S--------------FLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAME 511 (617)
Q Consensus 453 ~--------------fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~e 511 (617)
. -+|-.+.-+|.+|..+++.-+ .-|+++-..||.+..-|++-+..+
T Consensus 241 e~gknaY~~~ieke~q~raeL~acEEkl~kmeE~Qa-------------~~l~~aR~~errkvraqf~dfssk 300 (311)
T PF04642_consen 241 EPGKNAYLAAIEKENQARAELNACEEKLKKMEEEQA-------------EMLRAARTEERRKVRAQFHDFSSK 300 (311)
T ss_pred cCCcchHHHHHhhHHHHHHHHHHHHHHHhcccHHHH-------------HHHHHHHHHHHHHHHHHHHHhHHh
Confidence 2 222235555555554433322 236788889999999998877543
No 251
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=47.16 E-value=6e+02 Score=30.77 Aligned_cols=103 Identities=16% Similarity=0.203 Sum_probs=78.4
Q ss_pred hhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhh
Q 007114 286 GISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDL 365 (617)
Q Consensus 286 g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el 365 (617)
+.-.+.|+||.-++.|=.+....=+-|-+....--|..++||-.|+.=..++--+|.-.++---..+.|+--.+.|-.++
T Consensus 104 ~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaev 183 (861)
T KOG1899|consen 104 PEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEV 183 (861)
T ss_pred CcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHH
Confidence 55678899999999998888888888888887666777799999998888888888888877777777777777777777
Q ss_pred hhhhhhhHHHHHHHHHHHHhHHHHHH
Q 007114 366 KGSRATSEKVESLERQLRESDIQLQH 391 (617)
Q Consensus 366 ~~Lk~lsEKv~sLEkQLkEse~QL~~ 391 (617)
.+||= |+..||+.-.|++..+..
T Consensus 184 SeLKL---kltalEkeq~e~E~K~R~ 206 (861)
T KOG1899|consen 184 SELKL---KLTALEKEQNETEKKLRL 206 (861)
T ss_pred HHhHH---HHHHHHHHhhhHHHHHHh
Confidence 77763 555666665555554443
No 252
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.01 E-value=5.6e+02 Score=30.40 Aligned_cols=140 Identities=20% Similarity=0.239 Sum_probs=90.1
Q ss_pred hchhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh----hhHHHHHHH
Q 007114 307 QREAGLRSKL---DSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA----TSEKVESLE 379 (617)
Q Consensus 307 ~REsel~sKL---kslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~----lsEKv~sLE 379 (617)
+|+-+=++++ ++-++.+++|..-|.-|..+..++++..-.-.-...+|..|-..++.+|..|.= -.|+..-+|
T Consensus 321 qr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme 400 (654)
T KOG4809|consen 321 QRERDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKME 400 (654)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3444444444 344444444444444444444445554444444555666666666666665443 677888888
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHh--
Q 007114 380 RQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRD-- 457 (617)
Q Consensus 380 kQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLks-- 457 (617)
.||+-....+-.|.+.-+... .|+++|--+...+.-+.+|-+ +-+-|+++..|...+|.
T Consensus 401 ~qLkkAh~~~ddar~~pe~~d--------~i~~le~e~~~y~de~~kaqa-----------evdrlLeilkeveneKnDk 461 (654)
T KOG4809|consen 401 AQLKKAHNIEDDARMNPEFAD--------QIKQLEKEASYYRDECGKAQA-----------EVDRLLEILKEVENEKNDK 461 (654)
T ss_pred HHHHHHHHhhHhhhcChhhHH--------HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhhccc
Confidence 888887777777777766543 488999988888888887753 34578899999888887
Q ss_pred --HHHHHHHH
Q 007114 458 --RLECLEAS 465 (617)
Q Consensus 458 --r~~~LE~~ 465 (617)
|+..||..
T Consensus 462 dkkiaeler~ 471 (654)
T KOG4809|consen 462 DKKIAELERH 471 (654)
T ss_pred cchhhhcCch
Confidence 67777743
No 253
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=46.84 E-value=62 Score=29.82 Aligned_cols=52 Identities=33% Similarity=0.427 Sum_probs=39.5
Q ss_pred HHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHH
Q 007114 406 LYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEA 464 (617)
Q Consensus 406 l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~ 464 (617)
++..|..||.=|..|-..+..-. .....|-|.|..|.-|-..||.|+..++.
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK-------~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELK-------KQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55556666666666665555554 37788999999999999999999998877
No 254
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=46.45 E-value=3.1e+02 Score=27.30 Aligned_cols=22 Identities=14% Similarity=0.258 Sum_probs=10.2
Q ss_pred cccccCCchhHHHHHHHHHHHH
Q 007114 581 LRRIDAGLLTSKHFFIAVLIVL 602 (617)
Q Consensus 581 vr~i~~~~l~~k~i~~a~lvll 602 (617)
+...++..++--.-++|=||.|
T Consensus 189 ~~~~~~~~isaALgyvahlv~l 210 (302)
T PF10186_consen 189 FNSLPDEEISAALGYVAHLVSL 210 (302)
T ss_pred cccCCHHHHHHHHHHHHHHHHH
Confidence 3344444444444444445555
No 255
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=46.28 E-value=1.9e+02 Score=24.86 Aligned_cols=45 Identities=29% Similarity=0.420 Sum_probs=20.4
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhh
Q 007114 377 SLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKAD 428 (617)
Q Consensus 377 sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAE 428 (617)
+|++.|++=+.|...-...-+. |-.+--.+.++|.-|+.++...|
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGek-------LSk~el~~~~~IKKLr~~~~e~e 46 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEK-------LSKKELKLNNTIKKLRAKIKELE 46 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHH-------HHHHHHhhHHHHHHHHHHHHHHH
Confidence 4556666666554433332222 22223334455555555444443
No 256
>PRK11519 tyrosine kinase; Provisional
Probab=45.18 E-value=5.2e+02 Score=30.36 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=22.9
Q ss_pred HHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhh
Q 007114 245 VEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKG 286 (617)
Q Consensus 245 ~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g 286 (617)
++..+..|...+.+-..|+++-...+-.++-+||.+.+-++.
T Consensus 254 i~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~ 295 (719)
T PRK11519 254 LEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQ 295 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455455555555555555555556566555555543
No 257
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=44.96 E-value=2.9e+02 Score=27.73 Aligned_cols=56 Identities=18% Similarity=0.186 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhh
Q 007114 371 TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADS 433 (617)
Q Consensus 371 lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~ 433 (617)
+.++...||..+.+++-+++..+.-.++.. ++|+.|+.-++.++..+.++|.+-++
T Consensus 129 ~e~~i~~Le~ki~el~~~~~~~~~~ke~~~-------~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 129 LESEIKELEMKILELQRQAAKLKEKKEAKD-------KEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667766666666555554444433 56777777788888888777765544
No 258
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=44.91 E-value=7.5e+02 Score=31.25 Aligned_cols=22 Identities=9% Similarity=0.125 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhh
Q 007114 589 LTSKHFFIAVLIVLISAAAYYF 610 (617)
Q Consensus 589 l~~k~i~~a~lvll~~~~~~~~ 610 (617)
+-|.+++-.|+-.=-.+..||-
T Consensus 530 lGF~gyls~f~~~p~~vm~~Lc 551 (1072)
T KOG0979|consen 530 LGFEGYLSNFIEAPEPVMSYLC 551 (1072)
T ss_pred cChHHHhhhhhcCcHHHHHHHH
Confidence 6788888888766555555543
No 259
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=44.90 E-value=5.2e+02 Score=29.40 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=20.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 007114 146 IEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSA 182 (617)
Q Consensus 146 ~~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~ 182 (617)
.+++..|.....-+.+....|.+++.+.++|++.|-.
T Consensus 34 ~a~~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~ 70 (420)
T COG4942 34 AADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKS 70 (420)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555556666666666666543
No 260
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=44.78 E-value=2.2e+02 Score=28.27 Aligned_cols=44 Identities=32% Similarity=0.397 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhh
Q 007114 311 GLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSL 354 (617)
Q Consensus 311 el~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~L 354 (617)
.++.++..+.+++..++..+.+|+..+..+...-...+.|-.+|
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l 109 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELL 109 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 45666667788888888888888888887755555554444433
No 261
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=44.59 E-value=6.2e+02 Score=30.21 Aligned_cols=85 Identities=18% Similarity=0.261 Sum_probs=44.7
Q ss_pred HhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHH-----------HHHHHhhhhhH
Q 007114 410 VKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLH-----------QAEETKLATAK 478 (617)
Q Consensus 410 IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~-----------qa~~~K~stak 478 (617)
+-+||.+|++++ .-+...+.+-+.-.++...-.|..++-.|+.|+.=|+.+|. .+.+---....
T Consensus 164 ~~~Le~Ive~~~-----~~~~~~~~~~~lPtF~~~Desl~~~ll~L~arm~PLraSLdfLP~Ri~~F~~ra~~~fp~a~e 238 (683)
T PF08580_consen 164 IFELETIVEEMP-----SSTNSSNKRFSLPTFSPQDESLYSSLLALFARMQPLRASLDFLPMRIEEFQSRAESIFPSACE 238 (683)
T ss_pred cccHHHHHHhcc-----ccCCCCcCCcCCCCCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 345666666664 11111122223334566666777788888888888888885 23333333445
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q 007114 479 DIGIRTKVITNLVMQMAVERE 499 (617)
Q Consensus 479 dI~~~tK~i~dLv~QLa~ErE 499 (617)
+|..+-+.+++=-..|-.|-+
T Consensus 239 ~L~~r~~~L~~k~~~L~~e~~ 259 (683)
T PF08580_consen 239 ELEDRYERLEKKWKKLEKEAE 259 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555444444444433
No 262
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=44.00 E-value=87 Score=28.40 Aligned_cols=54 Identities=30% Similarity=0.366 Sum_probs=39.8
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHhhH--HHhhhhhHHHHHhhHhHHHHHHHHHHHHH
Q 007114 417 IQDLKLKVSKADSRADSAEEKLIIL--SEANAGLTEEISFLRDRLECLEASLHQAE 470 (617)
Q Consensus 417 IEeLK~KvskAESRAe~AE~kc~~L--tEtN~eLneEL~fLksr~~~LE~~L~qa~ 470 (617)
|+.|.+++.+-+.|.+..|.++.-| ...=-.|.-+|+-++|++.-++.++....
T Consensus 37 ~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 37 IEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5556677777788888888888888 45555777788888888888877776553
No 263
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=42.90 E-value=5.1e+02 Score=28.72 Aligned_cols=130 Identities=21% Similarity=0.240 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHH--HHHhhh-----hhhhHhhhhhHHhhHHHhhhh-------hhhhhhhHHHHHHHHHHHHhHHHHH
Q 007114 325 VKESVIASLRENLS--EAQARA-----DGAEVRCKSLAETNIELNEDL-------KGSRATSEKVESLERQLRESDIQLQ 390 (617)
Q Consensus 325 ~len~~e~LKe~i~--~AEsra-----~~aeskc~~LteTN~eL~~el-------~~Lk~lsEKv~sLEkQLkEse~QL~ 390 (617)
+++|-|.+|+.+|. +-|.|. -|.-.+++.|+.|--+|.+-+ +-.++-+-++..|=+.-|-.+-.|.
T Consensus 4 d~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRELA 83 (351)
T PF07058_consen 4 DVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERELA 83 (351)
T ss_pred hhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888889988876 444443 355667777888777766554 2333344455555444444444455
Q ss_pred HHHHhHHH------HHH--------HHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhH
Q 007114 391 HAVAYAEA------SLE--------KQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLR 456 (617)
Q Consensus 391 ~A~ASaea------~~e--------eqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLk 456 (617)
.|+.++-- ..= .-..-+.+-+-|--=+.-|++|+.-|| |+-.||++.+ .-|+
T Consensus 84 RaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaE-RtAkaEaQLk-------------eK~k 149 (351)
T PF07058_consen 84 RAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAE-RTAKAEAQLK-------------EKLK 149 (351)
T ss_pred HhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-------------HHHH
Confidence 55444321 100 011122233445555778899999998 7777777654 3466
Q ss_pred hHHHHHHHHHHH
Q 007114 457 DRLECLEASLHQ 468 (617)
Q Consensus 457 sr~~~LE~~L~q 468 (617)
=|+..||..|+.
T Consensus 150 lRLK~LEe~Lk~ 161 (351)
T PF07058_consen 150 LRLKVLEEGLKG 161 (351)
T ss_pred HHHHHHHhhccC
Confidence 688888888873
No 264
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=42.04 E-value=2.3e+02 Score=24.99 Aligned_cols=72 Identities=25% Similarity=0.332 Sum_probs=43.6
Q ss_pred HHHhhHHHhhhhhHHHHHhhHh---------HHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 007114 436 EKLIILSEANAGLTEEISFLRD---------RLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQIS 506 (617)
Q Consensus 436 ~kc~~LtEtN~eLneEL~fLks---------r~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qis 506 (617)
.++..|...|-.|...+..+.| .+..||..|..+ .+-|-.++ ...+..+.+.|+.+..
T Consensus 19 ~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~a-------L~~VR~rK------~~~l~~~i~~l~~ke~ 85 (100)
T PF01486_consen 19 QEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESA-------LKRVRSRK------DQLLMEQIEELKKKER 85 (100)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhh-------HHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 3455555555666666555555 355555555422 22222222 2355667788888999
Q ss_pred hhhhhhHHHHHHhh
Q 007114 507 SLAMENKVMVVKLQ 520 (617)
Q Consensus 507 sl~~eNk~L~~k~k 520 (617)
.+-.+|+.|..++.
T Consensus 86 ~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 86 ELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988764
No 265
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=41.56 E-value=4.3e+02 Score=27.58 Aligned_cols=17 Identities=35% Similarity=0.225 Sum_probs=8.3
Q ss_pred hhHhHHHHHHHHHHHHH
Q 007114 454 FLRDRLECLEASLHQAE 470 (617)
Q Consensus 454 fLksr~~~LE~~L~qa~ 470 (617)
..+.++..++..|.++.
T Consensus 187 ~~~a~~~~~~a~l~~a~ 203 (346)
T PRK10476 187 ALVAQRAAREAALAIAE 203 (346)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 34444455555555443
No 266
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=41.50 E-value=6e+02 Score=29.22 Aligned_cols=89 Identities=19% Similarity=0.219 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhh-h
Q 007114 370 ATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAG-L 448 (617)
Q Consensus 370 ~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~e-L 448 (617)
.++.....++.++.+.+.+++......+.....+...... |..-.+.|-.++. |.+...+++.|-+ |
T Consensus 71 ~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~---L~~~F~~LA~~il---------e~k~~~f~~~~~~~l 138 (475)
T PRK10361 71 SLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQR---LSEQFENLANRIF---------EHSNRRVDEQNRQSL 138 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Confidence 3444455555555555555554444443322222221111 2222333333333 3355555555543 3
Q ss_pred HHHHHhhHhHHHHHHHHHHHHH
Q 007114 449 TEEISFLRDRLECLEASLHQAE 470 (617)
Q Consensus 449 neEL~fLksr~~~LE~~L~qa~ 470 (617)
..=|.=||.++...++++.+..
T Consensus 139 ~~ll~Pl~e~l~~f~~~v~~~~ 160 (475)
T PRK10361 139 NSLLSPLREQLDGFRRQVQDSF 160 (475)
T ss_pred HHHHhhHHHHHHHHHHHHHHHH
Confidence 3444555555555555555444
No 267
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=41.46 E-value=8.1e+02 Score=30.69 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=66.4
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHH
Q 007114 380 RQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRL 459 (617)
Q Consensus 380 kQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~ 459 (617)
+|.+++++-..--..+.+..+.+....-.+|..++..|-..|++- ..--|-+.-.+|.+-.++..|++..++++
T Consensus 995 Rh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~e------l~e~efka~d~Sd~r~kie~efAa~eaem 1068 (1424)
T KOG4572|consen 995 RHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGE------LIEDEFKALDESDPRAKIEDEFAAIEAEM 1068 (1424)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccch------HHHHHhhhccccCcchhHHHHHHHHHhhh
Confidence 445555554444444444444444444444444444443333321 11223344556788888999999888877
Q ss_pred HHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 007114 460 ECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISS 507 (617)
Q Consensus 460 ~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qiss 507 (617)
...---+. .+++|...+-+-+..-=..+|-.||++|+..|.+
T Consensus 1069 deik~~~~------edrakqkei~k~L~ehelenLrnEieklndkIkd 1110 (1424)
T KOG4572|consen 1069 DEIKDGKC------EDRAKQKEIDKILKEHELENLRNEIEKLNDKIKD 1110 (1424)
T ss_pred hhhhhhhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 65432221 3456666666666666778899999998877643
No 268
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=40.57 E-value=4.5e+02 Score=30.61 Aligned_cols=87 Identities=20% Similarity=0.262 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHh-------hhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhh
Q 007114 412 DMENLIQDLKLKVSKADSRADSAEEKLIILSEA-------NAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRT 484 (617)
Q Consensus 412 dMEnvIEeLK~KvskAESRAe~AE~kc~~LtEt-------N~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~t 484 (617)
....=|++|-.....|+|||-+...+|..|..- ...+.+||....+++.-||..|. -.|-..-.+|..-+
T Consensus 417 ~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~---TTr~NYE~QLs~MS 493 (518)
T PF10212_consen 417 YYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELE---TTRRNYEEQLSMMS 493 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHH
Confidence 345557888889999999999998888877543 22344455555554444444432 23444556677777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007114 485 KVITNLVMQMAVERERL 501 (617)
Q Consensus 485 K~i~dLv~QLa~ErErL 501 (617)
.-+-.|.-||+.-++.+
T Consensus 494 EHLasmNeqL~~Q~eeI 510 (518)
T PF10212_consen 494 EHLASMNEQLAKQREEI 510 (518)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777666655
No 269
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=40.51 E-value=5e+02 Score=27.96 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh
Q 007114 325 VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA 370 (617)
Q Consensus 325 ~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~ 370 (617)
.|.+-...+| .-.+.++|+.==+=|+++|.+---.|...+..|+.
T Consensus 114 lm~~Qf~lvK-~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~ 158 (312)
T smart00787 114 LMDKQFQLVK-TFARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKE 158 (312)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666555 35688888888888888888887777777777776
No 270
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=40.13 E-value=3.9e+02 Score=26.59 Aligned_cols=60 Identities=22% Similarity=0.333 Sum_probs=28.0
Q ss_pred HHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhh-HHHhhhhhHHHHHhhHhHHHHHHHHH
Q 007114 407 YSTVKDMENLIQDLKLKVSKADSRADSAEEKLII-LSEANAGLTEEISFLRDRLECLEASL 466 (617)
Q Consensus 407 ~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~-LtEtN~eLneEL~fLksr~~~LE~~L 466 (617)
...|.+|+.-+++|+..+...+.+.+.++.+-.. +...+-...+|+.+||-.-..|..+|
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555444444444444432 33334445555555555444444333
No 271
>PF01456 Mucin: Mucin-like glycoprotein; InterPro: IPR000458 This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated []. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells.
Probab=39.90 E-value=32 Score=31.57 Aligned_cols=40 Identities=33% Similarity=0.412 Sum_probs=29.7
Q ss_pred ccccccccccccccccccCCchhHHHHHHHHHHHHHHHHhh
Q 007114 568 EVASVDLKSEVGTLRRIDAGLLTSKHFFIAVLIVLISAAAY 608 (617)
Q Consensus 568 ~~~~~d~~~~~~tvr~i~~~~l~~k~i~~a~lvll~~~~~~ 608 (617)
+++....-+.|..+|.||-+.-+.-| .-|=|+|.+||++|
T Consensus 100 eAPtttTTraPS~lreidgSls~saw-v~apl~la~salay 139 (143)
T PF01456_consen 100 EAPTTTTTRAPSRLREIDGSLSSSAW-VCAPLLLAVSALAY 139 (143)
T ss_pred CCCCCccccCCCcccccCCCcccchH-HHHHHHHHHHHHHH
Confidence 34445555678889999988555544 55788899999999
No 272
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=39.77 E-value=9e+02 Score=30.72 Aligned_cols=41 Identities=29% Similarity=0.364 Sum_probs=24.0
Q ss_pred ccccceEEEecccCCCccC---------------c--ccccccccCCcchhhhhhhhh
Q 007114 7 QETSASVVVNVGDSESESN---------------K--VYSLEGISANGDVIEELRSAG 47 (617)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~---------------~--~~~~~~~~s~g~~~~~~~~~~ 47 (617)
+..||+|=|-.|+|+-.-+ + .++.+-+-+-|+++.=+++|+
T Consensus 72 ~V~sA~VEIvF~nsdnr~~~~k~Ev~lrRtVGlKKDeY~lD~k~Vtk~evvnLLESAG 129 (1200)
T KOG0964|consen 72 MVMSASVEIVFDNSDNRLPRGKSEVSLRRTVGLKKDEYFLDNKMVTKGEVVNLLESAG 129 (1200)
T ss_pred ceEEEEEEEEEeCcccccCCCCCeEEEEEeecccchhhhcccccccHHHHHHHHHhcC
Confidence 4567777777777654322 1 134444566677776666664
No 273
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=38.99 E-value=1.1e+02 Score=28.29 Aligned_cols=47 Identities=28% Similarity=0.311 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh
Q 007114 310 AGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA 370 (617)
Q Consensus 310 sel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~ 370 (617)
.+|-+.+..+|+|+..|-..+..||..+.. |.+-|..|.-|-..|+.
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~--------------l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQE--------------LLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Confidence 467788889999999999999999988754 67777777777777665
No 274
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=38.86 E-value=3.6e+02 Score=28.76 Aligned_cols=44 Identities=25% Similarity=0.183 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhh
Q 007114 326 KESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSR 369 (617)
Q Consensus 326 len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk 369 (617)
.+=+-++||.++.+|--++-+---..+-+.+.--+++++++++.
T Consensus 105 ~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~ 148 (290)
T COG4026 105 VELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQ 148 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 33344455555555555554444444444444444444444443
No 275
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=38.48 E-value=9.8e+02 Score=30.77 Aligned_cols=183 Identities=25% Similarity=0.301 Sum_probs=99.8
Q ss_pred hHHHHHHHhhhhccCCCCCCCCCCCcccccccchhhhhhhccHHHHHHHHHHHHHHhhhhhhhHHHhHHHHHHHHHHHhh
Q 007114 173 SAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLEKSLAREMDLEKKLTESRQVEEALKFR 252 (617)
Q Consensus 173 sa~fqr~~~~~~~~~~~~~~~~~~~~ed~~~~~~~~~~~mqt~eQqR~iLrMLEkSlA~e~dLEkkL~es~~~eeeLk~k 252 (617)
....+|++..|-.++.|+. +|+.-..|+-.|=-.|=+|.|+-++=+ .|. +-+.-|
T Consensus 986 ~~~L~kaLA~FP~d~qWSa--------------FNs~EA~~AK~QMDaIKqmIekKv~L~-----~L~---qCqdAL--- 1040 (1439)
T PF12252_consen 986 MDMLQKALAAFPSDKQWSA--------------FNSEEARQAKAQMDAIKQMIEKKVVLQ-----ALT---QCQDAL--- 1040 (1439)
T ss_pred HHHHHHHHHhCCCcccchh--------------cCcHHHHHHHHHHHHHHHHHHHHHHHH-----HHH---HHHHHH---
Confidence 3456899988876667754 444444555555566777888877644 221 222222
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHH------------
Q 007114 253 LGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLV------------ 320 (617)
Q Consensus 253 L~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslE------------ 320 (617)
+|+.+-+|...+.. +-+|+ |+-. ||+++.+++|.+--+ |++|.
T Consensus 1041 ------eKqnIa~AL~ALn~--IPSdK--Ems~-Is~eLReQIq~~KQ~--------------LesLQRAV~TPVvtd~e 1095 (1439)
T PF12252_consen 1041 ------EKQNIAGALQALNN--IPSDK--EMSK-ISSELREQIQSVKQD--------------LESLQRAVVTPVVTDAE 1095 (1439)
T ss_pred ------HhhhHHHHHHHHhc--CCchh--hhhh-hhHHHHHHHHHHHHH--------------HHHHHHhhcccccccHH
Confidence 23444444433321 11111 1111 889999999887665 44332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh-hhHhhhhhHHhhHHHhhhhhhhhh-------hhHH-----HHHHHHHHHHhHH
Q 007114 321 KQVEVKESVIASLRENLSEAQARADG-AEVRCKSLAETNIELNEDLKGSRA-------TSEK-----VESLERQLRESDI 387 (617)
Q Consensus 321 eqL~~len~~e~LKe~i~~AEsra~~-aeskc~~LteTN~eL~~el~~Lk~-------lsEK-----v~sLEkQLkEse~ 387 (617)
+--+.++.++.++..+|..-|.-..- ..+=-+-+..- .-|++|+..|+- ..+| +..||+||+....
T Consensus 1096 Kvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~l-nnlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~~~ 1174 (1439)
T PF12252_consen 1096 KVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIANL-NNLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVIHT 1174 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH-HHHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHHHHhhh
Confidence 11227778888888887765543221 11212222222 246677777765 2233 4589999998877
Q ss_pred HHHHHHHhHHHHHHHHHhHHH
Q 007114 388 QLQHAVAYAEASLEKQNMLYS 408 (617)
Q Consensus 388 QL~~A~ASaea~~eeqn~l~S 408 (617)
.|.. |+..+.-++.+.|..
T Consensus 1175 kL~d--Ayl~eitKqIsaLe~ 1193 (1439)
T PF12252_consen 1175 KLYD--AYLVEITKQISALEK 1193 (1439)
T ss_pred hhHH--HHHHHHHHHHHHHHh
Confidence 6654 444444445444443
No 276
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=38.34 E-value=2.9e+02 Score=27.70 Aligned_cols=79 Identities=19% Similarity=0.160 Sum_probs=55.8
Q ss_pred hHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHH
Q 007114 409 TVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVIT 488 (617)
Q Consensus 409 ~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~ 488 (617)
..=+|+.||.=|+.=-.... ....+-..|-.|..|+.-|+.+...||+.+..+.......-+|...-.. ||
T Consensus 78 ~~ltl~~vI~fLq~l~~~~~--------~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~-Im 148 (161)
T TIGR02894 78 GSLTLQDVISFLQNLKTTNP--------SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLID-IM 148 (161)
T ss_pred ccCCHHHHHHHHHHHHhcch--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 34568888888865322221 3455667899999999999999999999998888777777777766544 45
Q ss_pred HHHHHHHH
Q 007114 489 NLVMQMAV 496 (617)
Q Consensus 489 dLv~QLa~ 496 (617)
|-..+|+.
T Consensus 149 ~RARkl~~ 156 (161)
T TIGR02894 149 DRARKLAV 156 (161)
T ss_pred HHHHHHHh
Confidence 55555553
No 277
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=38.20 E-value=3.1e+02 Score=30.62 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 007114 371 TSEKVESLERQLRESDIQLQHAVAYAEASLEK 402 (617)
Q Consensus 371 lsEKv~sLEkQLkEse~QL~~A~ASaea~~ee 402 (617)
.++++..|+++|++.+.++..+.+...+.+.+
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 100 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKAL 100 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888888887777777666655544
No 278
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=38.04 E-value=5.4e+02 Score=27.64 Aligned_cols=40 Identities=25% Similarity=0.249 Sum_probs=31.1
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccC
Q 007114 148 MEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALDREG 187 (617)
Q Consensus 148 ~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~~~~~ 187 (617)
++.|...+.....-+.+|+.++|.+...=+..+..|+...
T Consensus 162 ~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 201 (444)
T TIGR03017 162 IELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEK 201 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566677777788888888888888888888888886543
No 279
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=37.83 E-value=5.7e+02 Score=27.83 Aligned_cols=211 Identities=19% Similarity=0.145 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHhhhhhh-hHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHH----HHhhcchHHHHh------
Q 007114 217 QQRHFLRMLEKSLAREMD-LEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACER----LFEAENSAEVLK------ 285 (617)
Q Consensus 217 QqR~iLrMLEkSlA~e~d-LEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er----~~EAENa~EvL~------ 285 (617)
+.|+.|+--=.++|.+.| |=++..+.++.-.+++.+-....++...+=+-=..++.+ +-++.+..+-.-
T Consensus 27 ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~ 106 (294)
T COG1340 27 EKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGG 106 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 456777766666666554 555555555555555555544444444443333333333 223333222221
Q ss_pred hh---HHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhH
Q 007114 286 GI---SKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVE---VKESVIASLRENLSEAQARADGAEVRCKSLAETNI 359 (617)
Q Consensus 286 g~---skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~---~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~ 359 (617)
|. ..--+.+|.-.|-...=+.-.|..+-.++..|+++|. .+...+..+++-..++..--..+..=.+.+++.-.
T Consensus 107 ~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~ 186 (294)
T COG1340 107 RSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELAN 186 (294)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1122334444444444455566666666666666666 22233333333332222222222211112211111
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhh
Q 007114 360 ELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKA 427 (617)
Q Consensus 360 eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskA 427 (617)
+.++--..+..+-.+..-+=+...++........+-++..+++.-.++..|.+++..|..|+.+--.+
T Consensus 187 eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~ 254 (294)
T COG1340 187 EAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAA 254 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111112222333344444444444445555555555555555555555555555555555543333
No 280
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=37.72 E-value=3.1e+02 Score=28.85 Aligned_cols=113 Identities=19% Similarity=0.276 Sum_probs=67.6
Q ss_pred hHHHhHHHHHHHHHHHHhhhhhhhccccccchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccCCCCC
Q 007114 112 SELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNWIS 191 (617)
Q Consensus 112 SEv~Ele~~~~tlq~~I~~~~~~i~s~~~~g~~f~~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~~~~~~~~~ 191 (617)
+.+..-|.|+-.+-. |-..+.++..+.... ...+++.+....|.....-+.+|| .|..|.+.+..+=.-||+-+
T Consensus 139 ~~L~~~E~f~~~l~~-ip~~~~rl~~~~~~~----~f~~~~~~l~~~l~~l~~a~~~l~-~S~~l~~lL~~iL~~GN~lN 212 (370)
T PF02181_consen 139 ATLGPAEQFLLELSK-IPRLKERLEALLFKS----EFEEQLEELKEKLEKLEAACEELR-ESKSLRRLLEIILAIGNFLN 212 (370)
T ss_dssp TTB-HHHHHHHHHTT-STTHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHS
T ss_pred HhhccHHHHHHHHHH-HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHhc
Confidence 556667777777766 777777776665522 467888888888888888888885 78899999887544455544
Q ss_pred CCCCCCccccccc-chhhh-hhhccHHHHHHHHHHHHHHhhh
Q 007114 192 DKDTGSLEDDQFL-NENAK-IKLQTAEQQRHFLRMLEKSLAR 231 (617)
Q Consensus 192 ~~~~~~~ed~~~~-~~~~~-~~mqt~eQqR~iLrMLEkSlA~ 231 (617)
..+.. .+-.||. +.-.+ ..+-+.+.....|+.+-+.+..
T Consensus 213 ~g~~~-g~A~GF~L~sL~kL~~~Ks~d~~~tLL~~l~~~~~~ 253 (370)
T PF02181_consen 213 GGTPR-GNAKGFKLSSLSKLKDTKSNDNKTTLLHYLVKIVEE 253 (370)
T ss_dssp TCSTT-CS-SEE-GGGGGGCCCSB-STTTSBHHHHHHHHHHT
T ss_pred cCCCc-cccceecHHhHHHHHhcccccCCchHHHHHHHHHHh
Confidence 33211 1223332 11111 1112224456778887777665
No 281
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.41 E-value=5.5e+02 Score=27.53 Aligned_cols=66 Identities=18% Similarity=0.260 Sum_probs=31.0
Q ss_pred HHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHH
Q 007114 295 LQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIE 360 (617)
Q Consensus 295 Lq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~e 360 (617)
++.-+.-|+..-.-..++..++++|-.|..+..+-+.++++.|.+-++.....+.+++.|.+.-.+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444445555555555555555555555554444444444444444444333
No 282
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=36.97 E-value=5.3e+02 Score=27.25 Aligned_cols=18 Identities=17% Similarity=0.473 Sum_probs=10.4
Q ss_pred HHHhhHhHHHHHHHHHHH
Q 007114 451 EISFLRDRLECLEASLHQ 468 (617)
Q Consensus 451 EL~fLksr~~~LE~~L~q 468 (617)
.+-.++.++..|+.++.+
T Consensus 243 ~v~~l~~~i~~l~~~i~~ 260 (362)
T TIGR01010 243 QVPSLQARIKSLRKQIDE 260 (362)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 444555566666666654
No 283
>PRK10869 recombination and repair protein; Provisional
Probab=36.57 E-value=7.1e+02 Score=28.58 Aligned_cols=51 Identities=16% Similarity=0.093 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHH
Q 007114 310 AGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIE 360 (617)
Q Consensus 310 sel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~e 360 (617)
..++.+.+.+-..++.....++++..+-.+...+.+-..-..+.|...|.+
T Consensus 153 ~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~ 203 (553)
T PRK10869 153 TSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQ 203 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 456667766666666666666666666666666666666666777666654
No 284
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=36.24 E-value=2.1e+02 Score=24.50 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 007114 312 LRSKLDSLVKQVE 324 (617)
Q Consensus 312 l~sKLkslEeqL~ 324 (617)
+..++..++.++.
T Consensus 17 ~~~q~~~l~~~~~ 29 (106)
T PF01920_consen 17 LEQQIQQLERQLR 29 (106)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 285
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=36.20 E-value=1.2e+02 Score=28.21 Aligned_cols=47 Identities=26% Similarity=0.314 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh
Q 007114 310 AGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA 370 (617)
Q Consensus 310 sel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~ 370 (617)
.+|-+++.++|+|+..|-..+..||..+.. |.+-|..|.-|-+.|+.
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~e--------------l~EEN~~L~iEN~~Lr~ 50 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAE--------------LLEENTALRLENDKLRE 50 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Confidence 578888999999999999999999987754 66667777777666655
No 286
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=36.01 E-value=1.2e+02 Score=27.33 Aligned_cols=60 Identities=32% Similarity=0.356 Sum_probs=51.7
Q ss_pred Hhhhhhh-hHHHhHHHHHHHHHHHhhhhhh---hHHHHhHHHHHHHHHHHHHhhcchHHHHhhh
Q 007114 228 SLAREMD-LEKKLTESRQVEEALKFRLGSF---EQELLYTEEEAMDACERLFEAENSAEVLKGI 287 (617)
Q Consensus 228 SlA~e~d-LEkkL~es~~~eeeLk~kL~~~---eqe~~~lEE~~~~~~er~~EAENa~EvL~g~ 287 (617)
|+|.|+| ||.++..-+..-+...-||+.. .+....||+....+.+++-.-|+-...|++.
T Consensus 2 ~V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 5778886 9999999999888888888764 4668899999999999999999999998874
No 287
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=35.66 E-value=1.5e+02 Score=28.24 Aligned_cols=41 Identities=22% Similarity=0.337 Sum_probs=23.7
Q ss_pred hHHhhHHHhhhhhhhhh------hhHHHHHHHHHHHHhHHHHHHHHH
Q 007114 354 LAETNIELNEDLKGSRA------TSEKVESLERQLRESDIQLQHAVA 394 (617)
Q Consensus 354 LteTN~eL~~el~~Lk~------lsEKv~sLEkQLkEse~QL~~A~A 394 (617)
|...+..|..++..|.. +...+..|+.+++..+.+|.....
T Consensus 91 l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 91 LKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444 566777777777777777666554
No 288
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=35.55 E-value=3.5e+02 Score=28.42 Aligned_cols=71 Identities=18% Similarity=0.270 Sum_probs=51.0
Q ss_pred HHHhhhhhhhHHHhHHHHHHHHHHHHhhhhhhhccccccchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 007114 103 FDLLSGLLDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSA 182 (617)
Q Consensus 103 FDlL~gilDSEv~Ele~~~~tlq~~I~~~~~~i~s~~~~g~~f~~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~ 182 (617)
.+++++|+|.=|...-.++..+..++...+..+.....- +--..|...+..+..+|.-.+.-++++..
T Consensus 138 ~~l~~~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~~------------~~l~~l~~l~~~l~~lr~~l~~~~~~l~~ 205 (322)
T COG0598 138 DELLYALLDAIVDNYFPVLEQIEDELEAIEDQLLASTTN------------EELERLGELRRSLVYLRRALAPLRDVLLR 205 (322)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCccH------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 478899999999999999999999999998877766651 33344555555666666666666666665
Q ss_pred hhc
Q 007114 183 LDR 185 (617)
Q Consensus 183 ~~~ 185 (617)
+.+
T Consensus 206 l~~ 208 (322)
T COG0598 206 LAR 208 (322)
T ss_pred HHh
Confidence 654
No 289
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=34.13 E-value=3.4e+02 Score=24.19 Aligned_cols=45 Identities=27% Similarity=0.312 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhh
Q 007114 411 KDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFL 455 (617)
Q Consensus 411 sdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fL 455 (617)
.+++.=|..|...-++-.-+-+.++++|..|.++|-++..-|...
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555666666666666777778888888888777776543
No 290
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=33.29 E-value=5.6e+02 Score=26.46 Aligned_cols=68 Identities=31% Similarity=0.341 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHH-----------hhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHH
Q 007114 325 VKESVIASLRENLSEAQARADGAEVRCKSLAE-----------TNIELNEDLKGSRATSEKVESLERQLRESDIQLQHA 392 (617)
Q Consensus 325 ~len~~e~LKe~i~~AEsra~~aeskc~~Lte-----------TN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A 392 (617)
.-.+.|..||-++-.+-+...+.+..+..|.+ ...+|....++..-+++|+..||..+......+..+
T Consensus 28 ~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 28 QKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 44555666666666555555555555554433 333344434443336667777776666655554443
No 291
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=33.23 E-value=5.2e+02 Score=26.02 Aligned_cols=53 Identities=30% Similarity=0.351 Sum_probs=29.7
Q ss_pred hHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHH
Q 007114 405 MLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEE 471 (617)
Q Consensus 405 ~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~ 471 (617)
.+.+.|.++|.-|-+|+.. +..+.+.+-.-..|++-+++.++.+...+.-++.
T Consensus 128 ~~e~~i~~Le~ki~el~~~--------------~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~ 180 (190)
T PF05266_consen 128 ELESEIKELEMKILELQRQ--------------AAKLKEKKEAKDKEISRLKSEAEALKEEIENAEL 180 (190)
T ss_pred hHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666653 3333333444446777777777777666654443
No 292
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=33.20 E-value=1.1e+03 Score=29.86 Aligned_cols=141 Identities=19% Similarity=0.223 Sum_probs=64.7
Q ss_pred hhHhhhhhHHhhHHHhhhhhhhhh----------hhHHHHHHHHHHH-----HhHHHHHHHHHhHHHHHHHHHhHHHhHh
Q 007114 347 AEVRCKSLAETNIELNEDLKGSRA----------TSEKVESLERQLR-----ESDIQLQHAVAYAEASLEKQNMLYSTVK 411 (617)
Q Consensus 347 aeskc~~LteTN~eL~~el~~Lk~----------lsEKv~sLEkQLk-----Ese~QL~~A~ASaea~~eeqn~l~S~Is 411 (617)
-+..|+.=++|-..|..+++.|.- ...|+..|++..+ ...--...-++..+-.++++..+.-.+.
T Consensus 193 Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~ 272 (1072)
T KOG0979|consen 193 LEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIK 272 (1072)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444444444444444444444 4556666654332 1111122223333344445555555555
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhh---HhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHH
Q 007114 412 DMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFL---RDRLECLEASLHQAEETKLATAKDIGIRTKVIT 488 (617)
Q Consensus 412 dMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fL---ksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~ 488 (617)
.+++.+++|.+-+ +|++.+.-. +...|.+.+...++=..-+ +.++..+-+.|..+..+-.-+-++|+-.+|-|.
T Consensus 273 pi~~~~eeLe~~~--~et~~~~s~-~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~ 349 (1072)
T KOG0979|consen 273 PIEDKKEELESEK--KETRSKISQ-KQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMIL 349 (1072)
T ss_pred hhhhhhhhHHhHH--HhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666665522 222211111 1233455555555444333 335555555555444444445566666666665
Q ss_pred HH
Q 007114 489 NL 490 (617)
Q Consensus 489 dL 490 (617)
|+
T Consensus 350 ~~ 351 (1072)
T KOG0979|consen 350 DA 351 (1072)
T ss_pred HH
Confidence 54
No 293
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=33.17 E-value=3.2e+02 Score=23.66 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=11.3
Q ss_pred hHhhhhhHHhhHHHhhhhhhhhh
Q 007114 348 EVRCKSLAETNIELNEDLKGSRA 370 (617)
Q Consensus 348 eskc~~LteTN~eL~~el~~Lk~ 370 (617)
|+|+..+.+|.--|+.++..|+.
T Consensus 10 E~ki~~aveti~~Lq~e~eeLke 32 (72)
T PF06005_consen 10 EEKIQQAVETIALLQMENEELKE 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555444
No 294
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=32.59 E-value=5.2e+02 Score=28.97 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhH
Q 007114 323 VEVKESVIASLRENLSEAQARADGAEVRCKSLA 355 (617)
Q Consensus 323 L~~len~~e~LKe~i~~AEsra~~aeskc~~Lt 355 (617)
+..++..+..|+..+.+++.+....++++..|.
T Consensus 73 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 105 (525)
T TIGR02231 73 LAELRKQIRELEAELRDLEDRGDALKALAKFLE 105 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555556666666666666666663
No 295
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=32.51 E-value=4.3e+02 Score=29.02 Aligned_cols=101 Identities=19% Similarity=0.258 Sum_probs=0.0
Q ss_pred hhHHHHHHhhhcccccccccccccCCchhHHHHHHHHHHhhhhhhhHHHhHHHHHHHHHHHHhhhhhhhccccccchhhH
Q 007114 67 LNILTMHVATRESEFEAFAKKREHILDDDSVETALAFDLLSGLLDSELRELENFITTLEADFVKAHELISSYTELGKASI 146 (617)
Q Consensus 67 L~~l~M~l~~~~~~~E~~~~~~~~i~~~~s~ekaleFDlL~gilDSEv~Ele~~~~tlq~~I~~~~~~i~s~~~~g~~f~ 146 (617)
||.++-.+.....++-.+..+ -.+|++|-.++ ..|.++++++.+=+..++.++ ..+.........|.
T Consensus 246 Lhylv~~i~~~~p~~~~f~~e------l~~v~~askvs---~~l~~~~~~l~~~~~~~e~~~----~~l~~~~~~~d~f~ 312 (432)
T smart00498 246 LHFLVKIIRKKYPDLLDFYSD------LHHLDKAKVNL---EQLEKDVKQLERQIKNLETDL----GGLSDPENLDDKFI 312 (432)
T ss_pred HHHHHHHHHHhChhhccchhh------hccHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HhcCCCCCccchHH
Q ss_pred H-HHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 007114 147 E-MEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTL 180 (617)
Q Consensus 147 ~-~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~ 180 (617)
. |..-+.++...+..++..+..+.....+.-+.+
T Consensus 313 ~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yf 347 (432)
T smart00498 313 EVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYY 347 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 296
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=32.19 E-value=5.4e+02 Score=27.81 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 007114 491 VMQMAVERERLRQQISSL 508 (617)
Q Consensus 491 v~QLa~ErErL~~Qissl 508 (617)
+.+|+.|++.|..||-.|
T Consensus 221 LkKl~~eke~L~~qv~kl 238 (302)
T PF09738_consen 221 LKKLADEKEELLEQVRKL 238 (302)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567889999999999665
No 297
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=32.07 E-value=7.8e+02 Score=27.71 Aligned_cols=53 Identities=19% Similarity=0.120 Sum_probs=31.9
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHhhh-------hhhhHhhhhhHHhhHHHhhhhhhhhh
Q 007114 318 SLVKQVE---VKESVIASLRENLSEAQARA-------DGAEVRCKSLAETNIELNEDLKGSRA 370 (617)
Q Consensus 318 slEeqL~---~len~~e~LKe~i~~AEsra-------~~aeskc~~LteTN~eL~~el~~Lk~ 370 (617)
|+||.-. .+..-++.||.++..+.+=- +.-|.-.-.+.+-|..|.-.|+.++.
T Consensus 93 s~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~ 155 (401)
T PF06785_consen 93 SVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQ 155 (401)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5555444 66777888888887665543 44444444555556666555555554
No 298
>PRK11519 tyrosine kinase; Provisional
Probab=30.68 E-value=9.5e+02 Score=28.28 Aligned_cols=13 Identities=23% Similarity=0.284 Sum_probs=6.2
Q ss_pred HHHHHHHHHhhhh
Q 007114 495 AVERERLRQQISS 507 (617)
Q Consensus 495 a~ErErL~~Qiss 507 (617)
+.=|+.++.-|.+
T Consensus 443 ~~~~e~~d~~i~~ 455 (719)
T PRK11519 443 VLLRSLFNRGIES 455 (719)
T ss_pred HHHHHHhcCCcCC
Confidence 3345555544443
No 299
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=30.67 E-value=5.2e+02 Score=27.27 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 007114 319 LVKQVEVKESVIASLRENLSEAQARADGAEV 349 (617)
Q Consensus 319 lEeqL~~len~~e~LKe~i~~AEsra~~aes 349 (617)
++.++..++....+++.++..|+.+.+.|..
T Consensus 97 ~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~ 127 (370)
T PRK11578 97 AENQIKEVEATLMELRAQRQQAEAELKLARV 127 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555555543
No 300
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=30.21 E-value=3.2e+02 Score=32.15 Aligned_cols=32 Identities=28% Similarity=0.259 Sum_probs=16.6
Q ss_pred hhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhH
Q 007114 447 GLTEEISFLRDRLECLEASLHQAEETKLATAK 478 (617)
Q Consensus 447 eLneEL~fLksr~~~LE~~L~qa~~~K~stak 478 (617)
.-.+.+..++.++.++++.+.+...+..+..+
T Consensus 226 ~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~ 257 (759)
T PF01496_consen 226 TPEEAIKELEEEIEELEKELEELEEELKKLLE 257 (759)
T ss_dssp G-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666555544443333
No 301
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=30.18 E-value=1.3e+03 Score=29.86 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=50.4
Q ss_pred hhhHHHhHHHHHHHHHHHHhhhhhh--------hccccccchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 007114 110 LDSELRELENFITTLEADFVKAHEL--------ISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLS 181 (617)
Q Consensus 110 lDSEv~Ele~~~~tlq~~I~~~~~~--------i~s~~~~g~~f~~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~ 181 (617)
+++++..++...-.+-.++.+..+. +.+| .+.|..|.+.|..++..++..+.......--++=|.++|.
T Consensus 593 l~~~~~~~e~~~~~~~~~~e~~~~e~~k~~~~~lk~~---sgt~~~~~~~le~l~~eie~~rk~l~~lq~~s~~Y~k~Ie 669 (1294)
T KOG0962|consen 593 LQLEEQSLEINRNGIRKDLEDRKEEELKSKEFFLKDE---SGTIDEYLDLLERLKGEIEKARKDLAMLQGRSALYRKFIE 669 (1294)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh---ccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 5566667777777777777743222 2222 2245678888888888888888777777777788888886
Q ss_pred hhhccCCC
Q 007114 182 ALDREGNW 189 (617)
Q Consensus 182 ~~~~~~~~ 189 (617)
-..+...+
T Consensus 670 ~~~~~~~C 677 (1294)
T KOG0962|consen 670 IACRSHCC 677 (1294)
T ss_pred HHhhccCC
Confidence 55444433
No 302
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=30.00 E-value=1e+02 Score=30.00 Aligned_cols=52 Identities=21% Similarity=0.272 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhhhhhhhccccccchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Q 007114 117 LENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRT 179 (617)
Q Consensus 117 le~~~~tlq~~I~~~~~~i~s~~~~g~~f~~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~ 179 (617)
++++-+++-+-|......|..|+. |+.++..+..+-.||.+||+..-.|+-+
T Consensus 97 v~~~cdsvD~sik~~y~liakceE-----------Ln~~M~~v~~La~qIK~Ik~~lD~lE~~ 148 (149)
T PF10157_consen 97 VDKLCDSVDASIKSMYTLIAKCEE-----------LNESMKPVYKLAQQIKDIKKLLDLLESL 148 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456666777777777777777755 7788999999999999999999988754
No 303
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=29.47 E-value=5.9e+02 Score=25.51 Aligned_cols=56 Identities=5% Similarity=0.069 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHH
Q 007114 374 KVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEE 436 (617)
Q Consensus 374 Kv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~ 436 (617)
+....+.++..++.|+......++..+ ..|.+|+.-|+++|.+-.-.=.|...|.+
T Consensus 93 ~k~~~~~~~~~l~~~~~~~~~~v~~l~-------~~l~~L~~ki~~~k~k~~~l~ar~~~A~a 148 (219)
T TIGR02977 93 EKQKAQELAEALERELAAVEETLAKLQ-------EDIAKLQAKLAEARARQKALAIRHQAASS 148 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666665555555544 44666666666665554432233334443
No 304
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=28.98 E-value=7.4e+02 Score=26.49 Aligned_cols=93 Identities=23% Similarity=0.317 Sum_probs=59.4
Q ss_pred HHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhh---hHhhhhhhHHHHHHHHHHH
Q 007114 419 DLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLAT---AKDIGIRTKVITNLVMQMA 495 (617)
Q Consensus 419 eLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~st---akdI~~~tK~i~dLv~QLa 495 (617)
=++.++..|+.....++.+.. +...+|.-+..++..|+.++..+...|..- ++....+-.....|+.-|+
T Consensus 218 P~~~~l~~a~~~l~~~~~~L~-------~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~ 290 (344)
T PF12777_consen 218 PKRQKLEEAEAELEEAEEQLA-------EKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLS 290 (344)
T ss_dssp HHHHHHHHCCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhc
Confidence 355666666665555555544 334455555666666666665554444433 3444456667788999999
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHH
Q 007114 496 VERERLRQQISSLAMENKVMVVK 518 (617)
Q Consensus 496 ~ErErL~~Qissl~~eNk~L~~k 518 (617)
.|+.|=..++..+.....-|..-
T Consensus 291 ~E~~RW~~~~~~l~~~~~~l~GD 313 (344)
T PF12777_consen 291 GEKERWSEQIEELEEQLKNLVGD 313 (344)
T ss_dssp HHHHCCHCHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHhcccHHH
Confidence 99999999999887766655443
No 305
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=28.93 E-value=9.6e+02 Score=28.08 Aligned_cols=97 Identities=23% Similarity=0.325 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 007114 325 VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQN 404 (617)
Q Consensus 325 ~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn 404 (617)
-+..-|.+|-.++..|+||+..-..+|.-| ..++...|+..+-...++..+.......+++
T Consensus 417 ~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL-----------------~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDE-- 477 (518)
T PF10212_consen 417 YYMSRIEELTSQLQHADSKAVHFYAECRAL-----------------QKRLESAEKEKESLEEELKEANQNISRLQDE-- 477 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 567788999999999999999999999988 5556666555555444444444433333222
Q ss_pred hHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHH
Q 007114 405 MLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECL 462 (617)
Q Consensus 405 ~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~L 462 (617)
+. +---|+|.+.-.|||.=..||+-|+.-++....|
T Consensus 478 -------------------L~---TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 478 -------------------LE---TTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTL 513 (518)
T ss_pred -------------------HH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1123667777788887777777777777665554
No 306
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=28.83 E-value=5.7e+02 Score=25.12 Aligned_cols=67 Identities=15% Similarity=0.246 Sum_probs=46.4
Q ss_pred HHHHhhhhhhhHHHhHHHHHHHHHHHHhhhhhhhccccccchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 007114 102 AFDLLSGLLDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTL 180 (617)
Q Consensus 102 eFDlL~gilDSEv~Ele~~~~tlq~~I~~~~~~i~s~~~~g~~f~~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~ 180 (617)
.+++++.|++.=+......++.+..++....+.+....+ .+.-..+-+.+..+..+|......++++
T Consensus 108 ~~~ll~~il~~~~~~~~~~l~~l~~~l~~le~~~~~~~~------------~~~~~~l~~l~~~l~~l~~~l~~~~~~l 174 (292)
T PF01544_consen 108 PEDLLYAILDEIVDDYFEVLEELEDELDELEDELDDRPS------------NELLRELFDLRRELSRLRRSLSPLREVL 174 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHTTT------------HHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc------------hhhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 578899999999999999999999999998888733333 1222233445555666666666666666
No 307
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=28.67 E-value=4.2e+02 Score=23.89 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhh
Q 007114 329 VIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLK 366 (617)
Q Consensus 329 ~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~ 366 (617)
.|++||++-......++++-+--..|...|-+|+.+-+
T Consensus 26 EieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 26 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444433
No 308
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=28.61 E-value=2e+02 Score=26.91 Aligned_cols=52 Identities=33% Similarity=0.414 Sum_probs=37.6
Q ss_pred HHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHH
Q 007114 406 LYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEA 464 (617)
Q Consensus 406 l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~ 464 (617)
++..+..||.-|..+-..+..-. .....|-|.|..|.-|-..||.|+..++.
T Consensus 6 lfd~l~~le~~l~~l~~el~~LK-------~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 6 IFDALDDLEQNLGVLLKELGALK-------KQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45556666666655555555444 36778889999999999999999987633
No 309
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=28.55 E-value=2.9e+02 Score=23.46 Aligned_cols=53 Identities=26% Similarity=0.370 Sum_probs=30.0
Q ss_pred HHhHHHhHhhhHHHHHHH---HHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHH
Q 007114 403 QNMLYSTVKDMENLIQDL---KLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECL 462 (617)
Q Consensus 403 qn~l~S~IsdMEnvIEeL---K~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~L 462 (617)
|..|.++|+.=..+=++| |+....+++|.+.||.+ |-+|..||..|+-+++.+
T Consensus 3 QsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~r-------n~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 3 QSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKR-------NRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence 445555555555555555 34445566666666665 555666666666555443
No 310
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=28.49 E-value=3.5e+02 Score=27.75 Aligned_cols=88 Identities=24% Similarity=0.313 Sum_probs=57.8
Q ss_pred hhHHHhHHHHHHHHHHHHhhhhhhhccccccchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccCCCC
Q 007114 111 DSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNWI 190 (617)
Q Consensus 111 DSEv~Ele~~~~tlq~~I~~~~~~i~s~~~~g~~f~~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~~~~~~~~ 190 (617)
|.|..-||.=+-.|+...+.-..- |. ++.-|=|-.++.-++.+||+.|.++|+.-+....-|-.|+.
T Consensus 78 ~eel~~ld~~i~~l~ek~q~l~~t---~s-----~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~----- 144 (201)
T KOG4603|consen 78 DEELQVLDGKIVALTEKVQSLQQT---CS-----YVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA----- 144 (201)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHH---HH-----HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 455555555444444444333322 21 23335566788889999999999999999999999976642
Q ss_pred CCCCCCCcccccccchhhhhhhccHHHHHHHHHHHHHHh
Q 007114 191 SDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLEKSL 229 (617)
Q Consensus 191 ~~~~~~~~ed~~~~~~~~~~~mqt~eQqR~iLrMLEkSl 229 (617)
-++.-|++..-++-||-++-.
T Consensus 145 ------------------g~~~vtpedk~~v~~~y~~~~ 165 (201)
T KOG4603|consen 145 ------------------GTNHVTPEDKEQVYREYQKYC 165 (201)
T ss_pred ------------------hcccCCHHHHHHHHHHHHHHH
Confidence 233347777777777776644
No 311
>PTZ00464 SNF-7-like protein; Provisional
Probab=28.43 E-value=6.6e+02 Score=25.73 Aligned_cols=113 Identities=12% Similarity=0.123 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHH
Q 007114 310 AGLRSKLDSLVKQVEVKESVIASLRENLSEA--------QARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQ 381 (617)
Q Consensus 310 sel~sKLkslEeqL~~len~~e~LKe~i~~A--------Esra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQ 381 (617)
..++++++++++.++.++......|+.+.+. ..||-++--+.+.++.-=-++..-+..|..+...+....-.
T Consensus 21 ~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~a~~~ 100 (211)
T PTZ00464 21 KRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTESVKDT 100 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777776543 33444444444444332222222233332222222211111
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhh
Q 007114 382 LRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKAD 428 (617)
Q Consensus 382 LkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAE 428 (617)
..-+..-+.++.+.+.-++.+ .|-+.+.+.+++.+-...++
T Consensus 101 ----~~vv~amk~g~kaLK~~~k~i--~id~Vd~l~Dei~E~~e~~~ 141 (211)
T PTZ00464 101 ----KVQVDAMKQAAKTLKKQFKKL--NVDKVEDLQDELADLYEDTQ 141 (211)
T ss_pred ----HHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHH
Confidence 111223333444444444333 57777888888777665554
No 312
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=28.33 E-value=2.6e+02 Score=24.75 Aligned_cols=37 Identities=11% Similarity=0.180 Sum_probs=27.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 007114 147 EMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSAL 183 (617)
Q Consensus 147 ~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~ 183 (617)
.|+++++.+..-|.++++-+...+.-...+++....|
T Consensus 4 eme~~y~~~~~~l~~le~~l~~~~~~~~~~~~L~~YY 40 (90)
T PF14131_consen 4 EMEKIYNEWCELLEELEEALEKWQEAQPDYRKLRDYY 40 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888777777777777777777777766655
No 313
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=28.03 E-value=4.5e+02 Score=23.66 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=23.9
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 007114 360 ELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEA 398 (617)
Q Consensus 360 eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea 398 (617)
++...+..++.++.++..+-.|+...+.++..+....++
T Consensus 4 ~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~e 42 (110)
T TIGR02338 4 QVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEE 42 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666665555444
No 314
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=28.03 E-value=1.2e+03 Score=28.76 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=19.1
Q ss_pred hHHHHhhhHHHHHHhHHHHhhhccc
Q 007114 280 SAEVLKGISKELLGRLQIVLFNMNG 304 (617)
Q Consensus 280 a~EvL~g~skel~gkLq~~qf~L~a 304 (617)
|.+-|+++--.|+.||.|+.+.|+.
T Consensus 388 A~QplrsENaqLrRrLrilnqqlre 412 (861)
T PF15254_consen 388 AMQPLRSENAQLRRRLRILNQQLRE 412 (861)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 4667888888888888888877754
No 315
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=27.99 E-value=6.4e+02 Score=26.40 Aligned_cols=105 Identities=19% Similarity=0.201 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhhHhhhhhHHh-----------------h-----HHHhhhhh
Q 007114 311 GLRSKLDSLVKQVEVKESVIASLRENLSEAQAR--ADGAEVRCKSLAET-----------------N-----IELNEDLK 366 (617)
Q Consensus 311 el~sKLkslEeqL~~len~~e~LKe~i~~AEsr--a~~aeskc~~LteT-----------------N-----~eL~~el~ 366 (617)
++..++.+++.++.+...+|+.|-.++..++.- ..++.....-+..+ . ..=..-|.
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siLp 82 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSILP 82 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHHH
Confidence 577888899999999999999999999988754 22222222222100 0 00000111
Q ss_pred hhhh----hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHH
Q 007114 367 GSRA----TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMEN 415 (617)
Q Consensus 367 ~Lk~----lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEn 415 (617)
=+.. .+.|...||++++....++.......+..+.-=-.||-+|+=|-+
T Consensus 83 IVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 83 IVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111 677899999999988887777766666665554456666665544
No 316
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=27.82 E-value=7.8e+02 Score=26.41 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=32.5
Q ss_pred HHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhh
Q 007114 379 ERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSK 426 (617)
Q Consensus 379 EkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~Kvsk 426 (617)
|+-|.||+..+.+--...=++.+++......|.+|||.|.-.|..-.+
T Consensus 49 e~~leey~~em~~lL~ekm~Hveelr~iHadiN~men~ikq~k~~~~~ 96 (286)
T KOG4451|consen 49 EENLEEYELEMGVLLLEKMGHVEELREIHADINEMENDIKQVKALEQH 96 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555655544444444455677778889999999999988774433
No 317
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=27.38 E-value=7e+02 Score=25.71 Aligned_cols=45 Identities=24% Similarity=0.366 Sum_probs=22.7
Q ss_pred HHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHH
Q 007114 406 LYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECL 462 (617)
Q Consensus 406 l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~L 462 (617)
+.-++++||.=|.+|.+.+.--| +-+.=.+|.+|..-++-|+..+
T Consensus 98 l~~t~s~veaEik~L~s~Lt~ee------------mQe~i~~L~kev~~~~erl~~~ 142 (201)
T KOG4603|consen 98 LQQTCSYVEAEIKELSSALTTEE------------MQEEIQELKKEVAGYRERLKNI 142 (201)
T ss_pred HHHHHHHHHHHHHHHHHhcChHH------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666665443322 2233334555555555555444
No 318
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=27.27 E-value=7.9e+02 Score=26.29 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhhhhh
Q 007114 492 MQMAVERERLRQQISSL 508 (617)
Q Consensus 492 ~QLa~ErErL~~Qissl 508 (617)
.++..||+-+..|+...
T Consensus 109 ~~~~~e~~sl~~q~~~~ 125 (314)
T PF04111_consen 109 IEFQEERDSLKNQYEYA 125 (314)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556667676666554
No 319
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=26.89 E-value=6.8e+02 Score=25.36 Aligned_cols=104 Identities=22% Similarity=0.208 Sum_probs=68.9
Q ss_pred hHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHH
Q 007114 235 LEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRS 314 (617)
Q Consensus 235 LEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~s 314 (617)
||..+.+...+..+.+-.|+.++. .+..+..-.-.+.+..+.|+...+...+.+..++.-..|.-. +|.+
T Consensus 72 Le~ev~EAe~vV~ee~~sL~~aq~-------na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~---el~e 141 (188)
T PF05335_consen 72 LEQEVREAEAVVQEEKASLQQAQA-------NAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQ---ELAE 141 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 344556777777777777766654 344455555667777888888888888888888776666543 3444
Q ss_pred H----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 007114 315 K----------LDSLVKQVEVKESVIASLRENLSEAQARADGAE 348 (617)
Q Consensus 315 K----------LkslEeqL~~len~~e~LKe~i~~AEsra~~ae 348 (617)
| ++.|.+||...-.-++..|..-++|-.-|..|.
T Consensus 142 K~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA~~AA~eAk 185 (188)
T PF05335_consen 142 KTQLLEAAKRRVEELQRQLQAARADYEKTKKAAYKAACAAQEAK 185 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 336667777666666777777777766665554
No 320
>PF14282 FlxA: FlxA-like protein
Probab=26.88 E-value=3.4e+02 Score=24.62 Aligned_cols=57 Identities=19% Similarity=0.351 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHH----hHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhh
Q 007114 372 SEKVESLERQLRESDIQLQHAVA----YAEASLEKQNMLYSTVKDMENLIQDLKLKVSKAD 428 (617)
Q Consensus 372 sEKv~sLEkQLkEse~QL~~A~A----Saea~~eeqn~l~S~IsdMEnvIEeLK~KvskAE 428 (617)
...+..|.+|++....++..... +.+..+.+..++...|..|+.=|-.|...-....
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777776666 5577788888888888888888887776555443
No 321
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=26.30 E-value=7e+02 Score=25.31 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=20.9
Q ss_pred HHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhh
Q 007114 437 KLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKL 474 (617)
Q Consensus 437 kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~ 474 (617)
+...|.--|-.|..-++..+.++.+|+.++.++...+.
T Consensus 64 e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~ 101 (251)
T PF11932_consen 64 EIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQ 101 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555666666666666666555554443
No 322
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=25.79 E-value=9.2e+02 Score=26.57 Aligned_cols=75 Identities=17% Similarity=0.161 Sum_probs=34.0
Q ss_pred HHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHH
Q 007114 283 VLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVE-VKESVIASLRENLSEAQARADGAEVRCKSLAETNIEL 361 (617)
Q Consensus 283 vL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~-~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL 361 (617)
-+.....++.+.|..++.++. .-.+|+.+-|+.|. .|+..+.+ ...+..+...+..+++++.+...++
T Consensus 231 ~I~~~~~~~~~~L~kl~~~i~-------~~lekI~sREk~iN~qle~l~~e----Yr~~~~~ls~~~~~y~~~s~~V~~~ 299 (359)
T PF10498_consen 231 SIESALPETKSQLDKLQQDIS-------KTLEKIESREKYINNQLEPLIQE----YRSAQDELSEVQEKYKQASEGVSER 299 (359)
T ss_pred HHHHhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 333444444444444444443 23455555555555 33333222 2233344444444455555555555
Q ss_pred hhhhhhh
Q 007114 362 NEDLKGS 368 (617)
Q Consensus 362 ~~el~~L 368 (617)
..+|+.+
T Consensus 300 t~~L~~I 306 (359)
T PF10498_consen 300 TRELAEI 306 (359)
T ss_pred HHHHHHH
Confidence 5444444
No 323
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.49 E-value=1.3e+03 Score=28.04 Aligned_cols=133 Identities=14% Similarity=0.160 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhHHH--HHHHHHhHHH-------HHHHHHhHHHhHhhhHHHH--HHHHHhhhhhhhhhhhHHHHHhhHH
Q 007114 374 KVESLERQLRESDIQ--LQHAVAYAEA-------SLEKQNMLYSTVKDMENLI--QDLKLKVSKADSRADSAEEKLIILS 442 (617)
Q Consensus 374 Kv~sLEkQLkEse~Q--L~~A~ASaea-------~~eeqn~l~S~IsdMEnvI--EeLK~KvskAESRAe~AE~kc~~Lt 442 (617)
....+++.+.++... |+.+...-+. -..++-.+..+|-.|-.++ +|.+.+.+=+ ...+.|=+.|-+|+
T Consensus 401 ~~~~~~~~~~~s~~~r~L~~~~~~~~~~~~~~~s~~~Ei~~~QA~M~E~~Dt~~~~dV~~~~sL~-~~LeqAsK~CRIL~ 479 (852)
T KOG4787|consen 401 ISELERKNLELTTQVKQLETKVTPKPNFVVPSGTTTTELRKEQAQMNELKDTVFKSDVQKVISLA-TKLEQANKQCRILN 479 (852)
T ss_pred HHHHHHhcccHHHHHHHHhhccccchhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhchhHHHH
Confidence 445667776666653 4444333222 2222333334444444443 2333333322 34566778899986
Q ss_pred HhhhhhHHHHHhhHhHHHHHHHHHHHH--HHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 007114 443 EANAGLTEEISFLRDRLECLEASLHQA--EETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQ 520 (617)
Q Consensus 443 EtN~eLneEL~fLksr~~~LE~~L~qa--~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L~~k~k 520 (617)
.-=-++.. ++++++ +..=-.-.|-+.--.++=.||.+.|-.|-|-+..-+.-+...|-.|..-.-
T Consensus 480 ~RL~K~~R-------------~q~R~~~~~~~d~~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~~~e~~~evL~~~~~ 546 (852)
T KOG4787|consen 480 ERLNKLHR-------------KQVRDGEIQYSDELKIKILELEKRLSEKLAIDLVSELEGKIPTIDEIEQCCEVLAAVET 546 (852)
T ss_pred HHHhHHHH-------------HHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHhHHHHHHHHHHHHhh
Confidence 53222111 222211 111112233344445677788888889999999999999999998876544
No 324
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=25.44 E-value=6.4e+02 Score=27.78 Aligned_cols=91 Identities=18% Similarity=0.149 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007114 263 TEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQA 342 (617)
Q Consensus 263 lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEs 342 (617)
|-.....+...+-++...+.-|.......++|+++-+-.|| .||+.+-..+...++.++.++.
T Consensus 225 m~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN-----------------~qle~l~~eYr~~~~~ls~~~~ 287 (359)
T PF10498_consen 225 MKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYIN-----------------NQLEPLIQEYRSAQDELSEVQE 287 (359)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHhHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555554443333 2344444445566666666666
Q ss_pred hhhhhhHhhhhhHHhhHHHhhhhhhhhh
Q 007114 343 RADGAEVRCKSLAETNIELNEDLKGSRA 370 (617)
Q Consensus 343 ra~~aeskc~~LteTN~eL~~el~~Lk~ 370 (617)
+..++..-++.++..=.+++++|...|.
T Consensus 288 ~y~~~s~~V~~~t~~L~~IseeLe~vK~ 315 (359)
T PF10498_consen 288 KYKQASEGVSERTRELAEISEELEQVKQ 315 (359)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666655
No 325
>smart00340 HALZ homeobox associated leucin zipper.
Probab=25.40 E-value=53 Score=26.55 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=19.3
Q ss_pred hhhhhHHhhHHHhhhhhhhhhh
Q 007114 350 RCKSLAETNIELNEDLKGSRAT 371 (617)
Q Consensus 350 kc~~LteTN~eL~~el~~Lk~l 371 (617)
=|..|++-|-.|..++.+|+++
T Consensus 13 cce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 13 CCESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3678999999999999999885
No 326
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=25.12 E-value=9.4e+02 Score=26.42 Aligned_cols=29 Identities=31% Similarity=0.471 Sum_probs=24.1
Q ss_pred HHHHHhhhhhhhhhHHHHHHhhhccCCCC
Q 007114 499 ERLRQQISSLAMENKVMVVKLQQTKKDPS 527 (617)
Q Consensus 499 ErL~~Qissl~~eNk~L~~k~k~~~~~~~ 527 (617)
.||.+|+.-|..+++.|-.++......|+
T Consensus 181 N~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~ 209 (310)
T PF09755_consen 181 NRLWKQMDKLEAEKRRLQEKLEQPVSAPP 209 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCCCC
Confidence 58999999999999999999986544444
No 327
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=24.90 E-value=1e+03 Score=26.80 Aligned_cols=92 Identities=13% Similarity=0.178 Sum_probs=45.5
Q ss_pred HhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHH--------------------------------hhHh
Q 007114 410 VKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEIS--------------------------------FLRD 457 (617)
Q Consensus 410 IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~--------------------------------fLks 457 (617)
+-+||.+|--+++.-...+-..+.+--+|..-.|.+.+||.||+ .|++
T Consensus 129 ~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEs 208 (401)
T PF06785_consen 129 IQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLES 208 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHH
Confidence 34444444444444444444444444455555555555555544 3444
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhhhhhhH-HHHHHHHHHHHHHHHH
Q 007114 458 RLECLEASLHQAEETKLATAKDIGIRTK-VITNLVMQMAVERERL 501 (617)
Q Consensus 458 r~~~LE~~L~qa~~~K~stakdI~~~tK-~i~dLv~QLa~ErErL 501 (617)
||.+|=-.++.+..--...+.++--..+ .-.++..||..|-...
T Consensus 209 KVqDLm~EirnLLQle~~~~e~~p~~~~~~s~~v~~ql~selkki 253 (401)
T PF06785_consen 209 KVQDLMYEIRNLLQLESDMKESMPSTPSPSSQDVPKQLVSELKKI 253 (401)
T ss_pred HHHHHHHHHHHHHHhhhhhhhcCCCCCcchhhhhHHHHHHHHHHH
Confidence 4444433333333333344444444444 5566777777776654
No 328
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.71 E-value=6.2e+02 Score=30.79 Aligned_cols=82 Identities=27% Similarity=0.306 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHH--------hhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhH
Q 007114 325 VKESVIASLRENLSEAQARADGAEVRCKSLAETNIEL--------NEDLKGSRATSEKVESLERQLRESDIQLQHAVAYA 396 (617)
Q Consensus 325 ~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL--------~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASa 396 (617)
+||..+.----.|.+||.=|+.---+..-|.++||+- ++=++.|-..-.-|...|++|-.|+.-|.|.+.+.
T Consensus 176 d~eal~~ta~~~igeaeaFaE~L~reLq~LdgANiqsilaSE~~Vn~ll~~ldaAl~~vd~~e~~Ld~yediL~hvre~i 255 (867)
T KOG2148|consen 176 DMEALLGTAVLGIGEAEAFAERLKRELQALDAANIQSILASEPLVNELLNGLDAALNEVDDMEEWLDSYEDILRHVREDI 255 (867)
T ss_pred hHHHHHhHHhhchhhHHHHHHHHHHHHHhhhcccHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555565555667777777777777788888888863 23334444445567788888888888888888888
Q ss_pred HHHHHHHHhH
Q 007114 397 EASLEKQNML 406 (617)
Q Consensus 397 ea~~eeqn~l 406 (617)
+.+.+.-+++
T Consensus 256 E~Ieekn~li 265 (867)
T KOG2148|consen 256 ESIEEKNNLI 265 (867)
T ss_pred HHHhcccchh
Confidence 8776654433
No 329
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=24.66 E-value=1.8e+02 Score=26.19 Aligned_cols=58 Identities=22% Similarity=0.328 Sum_probs=39.5
Q ss_pred hHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHH-hhhhhHHHHHhhHhHHHHHHHHHHHHHH
Q 007114 409 TVKDMENLIQDLKLKVSKADSRADSAEEKLIILSE-ANAGLTEEISFLRDRLECLEASLHQAEE 471 (617)
Q Consensus 409 ~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtE-tN~eLneEL~fLksr~~~LE~~L~qa~~ 471 (617)
+|..+|.-|...+..+-..++|--. ..||. .=-.|-+|++.+++++...|++|+.+..
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~~-----~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLRR-----RELSPEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcc-----cCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 4566666666666666555554322 23444 5566779999999999999999987655
No 330
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=24.15 E-value=9.8e+02 Score=28.82 Aligned_cols=95 Identities=19% Similarity=0.206 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHH
Q 007114 412 DMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLV 491 (617)
Q Consensus 412 dMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv 491 (617)
+++.+|++|...-...|.+.+.++.....+....-+|.++...|+.+-..+..++.+--+.-...|+. --..+|.+|-
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~--~~~~~i~~lk 594 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKK--EADEIIKELR 594 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q ss_pred H--------HHHHHHHHHHHhhhhh
Q 007114 492 M--------QMAVERERLRQQISSL 508 (617)
Q Consensus 492 ~--------QLa~ErErL~~Qissl 508 (617)
. .-..+....+.++..+
T Consensus 595 ~~~~~~~~~~~~~~~~~~~~~l~~~ 619 (782)
T PRK00409 595 QLQKGGYASVKAHELIEARKRLNKA 619 (782)
T ss_pred HhhhcccchhhHHHHHHHHHHHHHh
No 331
>PRK10698 phage shock protein PspA; Provisional
Probab=24.13 E-value=7.7e+02 Score=25.08 Aligned_cols=123 Identities=9% Similarity=0.090 Sum_probs=78.9
Q ss_pred HHHHHHHhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHH-------HHHHHHhhcchHHHHhhhHHHHHHh
Q 007114 222 LRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMD-------ACERLFEAENSAEVLKGISKELLGR 294 (617)
Q Consensus 222 LrMLEkSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~-------~~er~~EAENa~EvL~g~skel~gk 294 (617)
-+-+-+-+|..--+++++.+......++..|--..- ...=|+.|.. +-++...-++..+........+...
T Consensus 44 r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al--~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~ 121 (222)
T PRK10698 44 RSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELAL--RKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKE 121 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555566677777777766666655532221 1223455555 5555566666777777777788888
Q ss_pred HHHHhhhcccchhchhhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhhhh
Q 007114 295 LQIVLFNMNGSVQREAGLRSKLDSLVKQVE-----------VKESVIASLRENLSEAQARADG 346 (617)
Q Consensus 295 Lq~~qf~L~as~~REsel~sKLkslEeqL~-----------~len~~e~LKe~i~~AEsra~~ 346 (617)
+..++..+.-..-|-..|..+...++-+.+ .--+-.+.+.+.|.+.|.+++.
T Consensus 122 l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea 184 (222)
T PRK10698 122 IGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAES 184 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhH
Confidence 888888888888888888888887777766 2223344566667766666654
No 332
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.97 E-value=4.9e+02 Score=25.24 Aligned_cols=64 Identities=22% Similarity=0.227 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHH
Q 007114 373 EKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILS 442 (617)
Q Consensus 373 EKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~Lt 442 (617)
.++-.+++.++....|...+....+.. ...+....+.-|++||..+.+++.-.+.--+++.+|+
T Consensus 125 ~~l~~~~~~~~~~~kq~~~~~~~~~~~------~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 125 KELIKLEEKLEALKKQAESASEAAEKL------LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhh------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555554444443333221 1223444455566666666666554444444444443
No 333
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=23.82 E-value=9.7e+02 Score=26.14 Aligned_cols=205 Identities=17% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHhhhhhhhhh--------hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhh
Q 007114 360 ELNEDLKGSRA--------TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRA 431 (617)
Q Consensus 360 eL~~el~~Lk~--------lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRA 431 (617)
+..+|+++++. +--.+..+|.+.|..+..-+.-+-..++.+++|+.-+++ .=..|.-|....+..-.--
T Consensus 31 ~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q---~y~q~s~Leddlsqt~aik 107 (333)
T KOG1853|consen 31 QMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQ---FYQQESQLEDDLSQTHAIK 107 (333)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 007114 432 DSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAME 511 (617)
Q Consensus 432 e~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~e 511 (617)
+.--+-.-.|.-.|-.|..==-.----++++|.+|.||-+.-+=---++ .|+|-|-.-+.-|-+|
T Consensus 108 eql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESEL---------------dEke~llesvqRLkdE 172 (333)
T KOG1853|consen 108 EQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESEL---------------DEKEVLLESVQRLKDE 172 (333)
T ss_pred HHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh---------------hHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHhhhccCCCCcccCCCCchhhhhhh---hhhhhhhhcchhhhhhhcccCCCCcccccccccccccccc
Q 007114 512 NKVMVVKLQQTKKDPSIVRHDSTTASFERES---KEVTELSAAVSEEDKRQKNVSAGETEVASVDLKSEVGTLR 582 (617)
Q Consensus 512 Nk~L~~k~k~~~~~~~~~~~~~~~~~~~~~~---~~~t~~s~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~tvr 582 (617)
-+-|.+.+.--.+..-.++......--++.+ |+++.+-+.-|...-++....-+-.+....+..|-...+|
T Consensus 173 ardlrqelavr~kq~E~pR~~~Pss~~~er~dtavqa~~slP~tP~~~gs~~~f~~pr~~d~~~g~~pltp~aR 246 (333)
T KOG1853|consen 173 ARDLRQELAVRTKQTERPRIVEPSSVEAERTDTAVQAPESLPDTPSPGGSKEEFKMPRSEDVFMGDVPLTPDAR 246 (333)
T ss_pred HHHHHHHHHHHHhhccCCCcCCccchhhhhcchhhcCcccCCCCCCCCCchhhcCCCcccccccCCCCCCchhh
No 334
>PHA02414 hypothetical protein
Probab=23.74 E-value=3.4e+02 Score=25.59 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHh
Q 007114 326 KESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNM 405 (617)
Q Consensus 326 len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~ 405 (617)
|...|.+|-.++..-|++.+..+---+- +|.+|+..+.+|++. ...-.--+.-+.|+|..
T Consensus 2 ~D~~in~Lv~~v~~ledKiQ~Gelt~kg---dn~eL~~av~ELRdi-----------------vvslDKd~Av~sEKqsh 61 (111)
T PHA02414 2 MDKEINNLVSQVETLEDKIQEGELTDKG---DNKELEVAVAELRDI-----------------VVSLDKDVAVNSEKQSH 61 (111)
T ss_pred cchHHHHHHHHHHHHHHHHhcCccccCC---chHHHHHHHHHHHHH-----------------HHHhhhHhhhhHHHhhH
Q ss_pred HHHhHhhhHHHHHHHHH
Q 007114 406 LYSTVKDMENLIQDLKL 422 (617)
Q Consensus 406 l~S~IsdMEnvIEeLK~ 422 (617)
++-+|..+|.-|+.|..
T Consensus 62 i~yQi~~Lee~i~aL~~ 78 (111)
T PHA02414 62 IYYQIERLEEKISALAE 78 (111)
T ss_pred HHHHHHHHHHHHHHHHh
No 335
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=23.73 E-value=5.3e+02 Score=24.39 Aligned_cols=78 Identities=21% Similarity=0.320 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHH
Q 007114 411 KDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNL 490 (617)
Q Consensus 411 sdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dL 490 (617)
+.||--|.||...++++-+ +...+ + .-||.-|+.- .+ .......+-.+.+.-.++-+.+.
T Consensus 3 sQmElrIkdLeselsk~Kt----sq~d~---~------~~eLEkYkql------y~-eElk~r~SLs~kL~ktnerLaev 62 (111)
T PF12001_consen 3 SQMELRIKDLESELSKMKT----SQEDS---N------KTELEKYKQL------YL-EELKLRKSLSNKLNKTNERLAEV 62 (111)
T ss_pred hHHHHHHHHHHHHHHHhHh----Hhhhh---h------HHHHHHHHHH------HH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999988862 22222 0 1223333320 00 11111122233344455667777
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 007114 491 VMQMAVERERLRQQISSL 508 (617)
Q Consensus 491 v~QLa~ErErL~~Qissl 508 (617)
-++|-.|+|+=.+.++++
T Consensus 63 stkLl~Ekeq~rs~lstl 80 (111)
T PF12001_consen 63 STKLLVEKEQNRSLLSTL 80 (111)
T ss_pred hhHHHHHHHhcccccccc
Confidence 888999999888878877
No 336
>PRK04325 hypothetical protein; Provisional
Probab=23.69 E-value=2.4e+02 Score=24.36 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHH
Q 007114 394 AYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSE 443 (617)
Q Consensus 394 ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtE 443 (617)
+++.+..+....|.+.+...|.+|++|-.-|..-....+.-..+|..|.+
T Consensus 2 ~~~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~ 51 (74)
T PRK04325 2 DAVQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQ 51 (74)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 337
>smart00338 BRLZ basic region leucin zipper.
Probab=23.66 E-value=1.7e+02 Score=23.78 Aligned_cols=31 Identities=39% Similarity=0.446 Sum_probs=17.2
Q ss_pred HHHHhhHHHhhhhhHHHHHhhHhHHHHHHHH
Q 007114 435 EEKLIILSEANAGLTEEISFLRDRLECLEAS 465 (617)
Q Consensus 435 E~kc~~LtEtN~eLneEL~fLksr~~~LE~~ 465 (617)
|.++..|...|.+|..+++.|+.....|...
T Consensus 32 e~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 32 ERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666655555554443
No 338
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=23.65 E-value=7.8e+02 Score=24.96 Aligned_cols=7 Identities=29% Similarity=0.382 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 007114 493 QMAVERE 499 (617)
Q Consensus 493 QLa~ErE 499 (617)
-+..|.+
T Consensus 157 a~~~E~~ 163 (251)
T PF11932_consen 157 AYQIEME 163 (251)
T ss_pred HHHHHHH
Confidence 3334433
No 339
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=23.57 E-value=7.7e+02 Score=24.88 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHH
Q 007114 374 KVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEIS 453 (617)
Q Consensus 374 Kv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~ 453 (617)
-+..||+.|+....+.+... -.++-.|.....+|+.||.--.++-.|+..-|. - +.+|..|+.
T Consensus 144 ~~~~le~~l~~~k~~ie~vN---~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~-------a-------~~~Le~ei~ 206 (221)
T PF05700_consen 144 MLKRLEKELAKLKKEIEEVN---RERKRRQEEAGEELRYLEQRWKELVSKNLEIEV-------A-------CEELEQEIE 206 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------H-------HHHHHHHHH
Confidence 34455555554444433332 345556777888899999998888887776653 3 445557777
Q ss_pred hhHhHHHHHHHH
Q 007114 454 FLRDRLECLEAS 465 (617)
Q Consensus 454 fLksr~~~LE~~ 465 (617)
.+|-+...++.+
T Consensus 207 ~l~~~~~~~~~~ 218 (221)
T PF05700_consen 207 QLKRKAAELKEN 218 (221)
T ss_pred HHHHHHHHHhcc
Confidence 777666655543
No 340
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=23.50 E-value=4e+02 Score=25.52 Aligned_cols=56 Identities=11% Similarity=0.288 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhhhhhhccccccchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 007114 120 FITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLS 181 (617)
Q Consensus 120 ~~~tlq~~I~~~~~~i~s~~~~g~~f~~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~ 181 (617)
=|+.+..-+..++. |+..---.|..||++..+--+++++++.++|.-.+.+..=+.
T Consensus 51 ql~~vs~~l~~tKk------hLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~ 106 (126)
T PF07889_consen 51 QLEQVSESLSSTKK------HLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVD 106 (126)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34444455555655 666666678899999999999999998888877777665554
No 341
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=23.46 E-value=9e+02 Score=25.58 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=19.8
Q ss_pred hHHHHhHHHHHHHHHHHHHhhcchHHHHhh
Q 007114 257 EQELLYTEEEAMDACERLFEAENSAEVLKG 286 (617)
Q Consensus 257 eqe~~~lEE~~~~~~er~~EAENa~EvL~g 286 (617)
.+-..|+++....+-.++-+|+....-++.
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~ 198 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQI 198 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777777777777766666554
No 342
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=23.45 E-value=6.5e+02 Score=23.97 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=10.7
Q ss_pred HHHHHhHHHhHhhhHHHHHHHHH
Q 007114 400 LEKQNMLYSTVKDMENLIQDLKL 422 (617)
Q Consensus 400 ~eeqn~l~S~IsdMEnvIEeLK~ 422 (617)
+.+|+-|.--+.|++.=|...|.
T Consensus 83 q~EldDLL~ll~Dle~K~~kyk~ 105 (136)
T PF04871_consen 83 QSELDDLLVLLGDLEEKRKKYKE 105 (136)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHH
Confidence 34444444444444444444443
No 343
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=23.41 E-value=5.4e+02 Score=24.55 Aligned_cols=30 Identities=17% Similarity=0.374 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHh
Q 007114 321 KQVEVKESVIASLRENLSEAQARADGAEVR 350 (617)
Q Consensus 321 eqL~~len~~e~LKe~i~~AEsra~~aesk 350 (617)
.|+.++...+.+|++++-+.|.|+..+.+.
T Consensus 8 ~q~~~l~~~v~~lRed~r~SEdrsa~SRa~ 37 (112)
T PF07439_consen 8 QQLGTLNAEVKELREDIRRSEDRSAASRAS 37 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 345555555556666666655555555443
No 344
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.40 E-value=1.3e+03 Score=27.61 Aligned_cols=90 Identities=19% Similarity=0.124 Sum_probs=76.0
Q ss_pred HhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHH
Q 007114 250 KFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESV 329 (617)
Q Consensus 250 k~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~ 329 (617)
-.+|.+.+||...++|-+..+-+|+=||----|.|+.-.+-++.+ .-.+|.-+..-|.|.++.|.-+-.++..|.+-
T Consensus 601 lQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~---~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~ 677 (741)
T KOG4460|consen 601 LQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHS---FHSELPVLSDAERDFKKELQLIPDQLRHLGNA 677 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc---ccccCCcchhHHHHHHHHHHHhHHHHHHHHHH
Confidence 356788899999999999999999999888888888877777554 45678888999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 007114 330 IASLRENLSEAQA 342 (617)
Q Consensus 330 ~e~LKe~i~~AEs 342 (617)
|+.+|..+.+-.+
T Consensus 678 iET~~~~~~KQ~~ 690 (741)
T KOG4460|consen 678 IETVTMKKDKQQQ 690 (741)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888776433
No 345
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=23.06 E-value=2.9e+02 Score=23.31 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=12.3
Q ss_pred HHhhHHHhhhhhHHHHHhhHhHHHHHHHHHH
Q 007114 437 KLIILSEANAGLTEEISFLRDRLECLEASLH 467 (617)
Q Consensus 437 kc~~LtEtN~eLneEL~fLksr~~~LE~~L~ 467 (617)
-+..|+++=.+...+|..|+-.+..|..+|.
T Consensus 19 ~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 19 TIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444
No 346
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=22.98 E-value=7.6e+02 Score=24.58 Aligned_cols=133 Identities=18% Similarity=0.140 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHH
Q 007114 218 QRHFLRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQI 297 (617)
Q Consensus 218 qR~iLrMLEkSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~ 297 (617)
|..+=+||++.=|++.++ +..++ + |+ ..+|.|..--|+.=..|--=++.-+++....++.+.+.
T Consensus 39 ~e~Ld~~L~~~~ar~~gI----cpvr~---~----ly-----~~~F~ELIRQVTi~C~ERGlLL~rvrde~~~~l~~y~~ 102 (189)
T PF10211_consen 39 QEWLDKMLQQRQARETGI----CPVRE---E----LY-----SQCFDELIRQVTIDCPERGLLLLRVRDEYRMTLDAYQT 102 (189)
T ss_pred HHHHHHHHHHhcCCcccc----cHHHH---H----HH-----HHHHHHHHHHHHhCcHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344457888888887664 33221 1 11 23688889889888888888888888888888888765
Q ss_pred Hhhhccc-----chhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhh-hHHhhHHHhhhhhhhhh
Q 007114 298 VLFNMNG-----SVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKS-LAETNIELNEDLKGSRA 370 (617)
Q Consensus 298 ~qf~L~a-----s~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~-LteTN~eL~~el~~Lk~ 370 (617)
.--.-.+ ...+|-. ...++.+...|+..+..|+..+.....+.+..+.+... +...+-...++++.||.
T Consensus 103 l~~s~~~f~~rk~l~~e~~----~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~ 177 (189)
T PF10211_consen 103 LYESSIAFGMRKALQAEQG----KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKK 177 (189)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333333 2333220 11333333444444444444444444444444433332 23334444555555554
No 347
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=22.96 E-value=1.2e+02 Score=30.71 Aligned_cols=90 Identities=27% Similarity=0.423 Sum_probs=58.4
Q ss_pred HHHHhhHHHHHHHhhhhccCCCCCCCCCCCccc--ccccchhhhhhhccHHHHHHHHHHHHH--HhhhhhhhHHHhHHHH
Q 007114 168 EIKKQSAKFQRTLSALDREGNWISDKDTGSLED--DQFLNENAKIKLQTAEQQRHFLRMLEK--SLAREMDLEKKLTESR 243 (617)
Q Consensus 168 eik~qsa~fqr~~~~~~~~~~~~~~~~~~~~ed--~~~~~~~~~~~mqt~eQqR~iLrMLEk--SlA~e~dLEkkL~es~ 243 (617)
.||-=.++|+.++..+...|. ........+| .+|-+..++++...+. +...+.+|+| ++.--+.+|..|.+.+
T Consensus 99 tiRVP~~~~~~~l~~l~~~g~--v~~~~~~~~DvT~~y~D~~arl~~l~~~-~~rl~~ll~ka~~~~d~l~ie~~L~~v~ 175 (262)
T PF14257_consen 99 TIRVPADKFDSFLDELSELGK--VTSRNISSEDVTEQYVDLEARLKNLEAE-EERLLELLEKAKTVEDLLEIERELSRVR 175 (262)
T ss_pred EEEECHHHHHHHHHHHhccCc--eeeeeccccchHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 356667788888888764442 2222122232 2445677777776555 3445777765 4777788999999988
Q ss_pred HHHHHHHhhhhhhhHHH
Q 007114 244 QVEEALKFRLGSFEQEL 260 (617)
Q Consensus 244 ~~eeeLk~kL~~~eqe~ 260 (617)
.-.+.++-++.+..+..
T Consensus 176 ~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 176 SEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 88888888777766544
No 348
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=22.80 E-value=4e+02 Score=21.31 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHhHHHH
Q 007114 372 SEKVESLERQLRESDIQL 389 (617)
Q Consensus 372 sEKv~sLEkQLkEse~QL 389 (617)
...+..+..||...+..+
T Consensus 7 ~~~~~~l~~Wl~~~e~~l 24 (105)
T PF00435_consen 7 QQEADELLDWLQETEAKL 24 (105)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445666777777776666
No 349
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=22.79 E-value=3.1e+02 Score=30.06 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=32.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 007114 149 EEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSAL 183 (617)
Q Consensus 149 ~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~ 183 (617)
...|.+++..+.+.-.+|.+||..+.+-+.++..+
T Consensus 56 ~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~i 90 (383)
T PF04100_consen 56 EEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEI 90 (383)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999755
No 350
>PRK02793 phi X174 lysis protein; Provisional
Probab=22.39 E-value=3e+02 Score=23.64 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=31.4
Q ss_pred HHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhc
Q 007114 249 LKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNM 302 (617)
Q Consensus 249 Lk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L 302 (617)
+..|+...|--..|.|...+.++.=.++-......|....+.+.+||...+...
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~~ 59 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPSN 59 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 334444444445555556666666666666666666666666666666655433
No 351
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=21.82 E-value=2.3e+02 Score=25.10 Aligned_cols=57 Identities=14% Similarity=0.241 Sum_probs=45.4
Q ss_pred hhhhhhhHHHhHHHHHHHHHHHHhhhhhhhccccccchhhHHHHHhhhhHHHHHHHHHHHHHHHH
Q 007114 106 LSGLLDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIK 170 (617)
Q Consensus 106 L~gilDSEv~Ele~~~~tlq~~I~~~~~~i~s~~~~g~~f~~~~~KL~~~~~sLkQ~~e~i~eik 170 (617)
|-.|+ ..|++++.=+|.||..+.+.+... ..+..+.+||++...+|.-.+.++.+|-
T Consensus 6 Ll~Ir-~dIk~vd~KVdaLq~~V~~l~~~~-------~~v~~l~~klDa~~~~l~~l~~~V~~I~ 62 (75)
T PF05531_consen 6 LLVIR-QDIKAVDDKVDALQTQVDDLESNL-------PDVTELNKKLDAQSAQLTTLNTKVNEIQ 62 (75)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444 468999999999999998888764 3445688999999999998888887774
No 352
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=21.60 E-value=7.3e+02 Score=24.09 Aligned_cols=84 Identities=19% Similarity=0.251 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhH--h-hhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHH-HHHHhHHHHH
Q 007114 325 VKESVIASLRENLSEAQARADGAEV--R-CKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQ-HAVAYAEASL 400 (617)
Q Consensus 325 ~len~~e~LKe~i~~AEsra~~aes--k-c~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~-~A~ASaea~~ 400 (617)
-||.-|..|++.+..+...-..--+ + -..|+. ..=...|+.|...=.+||.|+|+++.+|. .++|.-.+..
T Consensus 19 QLekqi~~l~~kiek~r~n~~drl~siR~ye~Ms~-----~~l~~llkqLEkeK~~Le~qlk~~e~rLeQEsKAyhk~nd 93 (129)
T PF15372_consen 19 QLEKQIIILREKIEKIRGNPSDRLSSIRRYEQMSV-----ESLNQLLKQLEKEKRSLENQLKDYEWRLEQESKAYHKAND 93 (129)
T ss_pred HHHHHHHHHHHHHHHHhCCCccccHHHHHHhhccH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6777788888887776552221111 0 122211 11123445566677899999999999974 5677665544
Q ss_pred HHHHhHHHhHhhhH
Q 007114 401 EKQNMLYSTVKDME 414 (617)
Q Consensus 401 eeqn~l~S~IsdME 414 (617)
+. -+..++|+..-
T Consensus 94 eR-r~ylaEi~~~s 106 (129)
T PF15372_consen 94 ER-RQYLAEISQTS 106 (129)
T ss_pred HH-HHHHHHHHhhh
Confidence 32 33445555554
No 353
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=21.52 E-value=4e+02 Score=25.13 Aligned_cols=101 Identities=23% Similarity=0.271 Sum_probs=0.0
Q ss_pred cccchhhhhhhcc--HHHHHHHHHHHHHHhhhh----hhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHH
Q 007114 202 QFLNENAKIKLQT--AEQQRHFLRMLEKSLARE----MDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLF 275 (617)
Q Consensus 202 ~~~~~~~~~~mqt--~eQqR~iLrMLEkSlA~e----~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~ 275 (617)
+|..+..+.+.|. ..+++..|..+-+.|+.= ++.-.++.+.+....+|..|+ -.....+|-....-+-
T Consensus 31 GF~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~---l~v~~~~eilr~~g~~--- 104 (141)
T PF13874_consen 31 GFEDLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRL---LRVLRKQEILRNRGYA--- 104 (141)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCCC---
Q ss_pred hhcchHHHHhhhHHHHHHhHHHHhhhcccch---hchhhHHHHH
Q 007114 276 EAENSAEVLKGISKELLGRLQIVLFNMNGSV---QREAGLRSKL 316 (617)
Q Consensus 276 EAENa~EvL~g~skel~gkLq~~qf~L~as~---~REsel~sKL 316 (617)
|.++=..|.+||+.++..|++.+ .|-+||.+.|
T Consensus 105 --------l~~eEe~L~~~le~l~~~l~~p~~~~~rl~El~a~l 140 (141)
T PF13874_consen 105 --------LSPEEEELRKRLEALEAQLNAPAQLKGRLNELWAQL 140 (141)
T ss_dssp --------------------------------------------
T ss_pred --------CCHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHh
No 354
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=21.49 E-value=4.1e+02 Score=25.31 Aligned_cols=58 Identities=21% Similarity=0.253 Sum_probs=41.6
Q ss_pred hhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhh
Q 007114 367 GSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKA 427 (617)
Q Consensus 367 ~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskA 427 (617)
.+.+++.+|..|.+-+|+|+-..-...+ ...-....+-..+.++|..+..+|++++.-
T Consensus 9 q~~~l~~~v~~lRed~r~SEdrsa~SRa---~mhrRlDElV~Rv~~lEs~~~~lk~dVsem 66 (112)
T PF07439_consen 9 QLGTLNAEVKELREDIRRSEDRSAASRA---SMHRRLDELVERVTTLESSVSTLKADVSEM 66 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhH---HHHHhHHHHHHHHHHHHHHHHHHHhhHHhc
Confidence 3455788999999999988875443333 344456667777888888888888887654
No 355
>PRK07857 hypothetical protein; Provisional
Probab=21.44 E-value=2.1e+02 Score=26.68 Aligned_cols=66 Identities=18% Similarity=0.213 Sum_probs=52.3
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 007114 450 EEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVM 515 (617)
Q Consensus 450 eEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L 515 (617)
..|..+|.+...+-.+|-.+....+..+.+||.-++----=|-+...|.+-++.-...|...-..+
T Consensus 28 ~~L~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K~~~g~pI~dp~RE~eVl~rl~~~lg~~g~~~ 93 (106)
T PRK07857 28 AEIDELREEIDRLDAEILALVKRRTEVSQAIGKARMASGGTRLVHSREMKVIERYREELGPEGKDL 93 (106)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccChHHHHHHHHHHHHHhCCccHHH
Confidence 457789999999999999999999999999999887554456677778877776666665554444
No 356
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=21.21 E-value=1e+02 Score=28.85 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHhh
Q 007114 495 AVERERLRQQISSLAMENKVMVVKLQ 520 (617)
Q Consensus 495 a~ErErL~~Qissl~~eNk~L~~k~k 520 (617)
..|-.||+..+..|.+|||+|..|+.
T Consensus 71 ~~e~~rlkkk~~~LeEENNlLklKie 96 (108)
T cd07429 71 GREVLRLKKKNQQLEEENNLLKLKIE 96 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677899999999999999998876
No 357
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=21.13 E-value=6e+02 Score=26.76 Aligned_cols=106 Identities=20% Similarity=0.254 Sum_probs=62.3
Q ss_pred hhhhhhHHHHHHhhhcccccccccccccCCchhHHHHHHHHHHhhhhhhhHHHhHHHHHHHHHHHHhhhhhhhccccccc
Q 007114 63 KLVNLNILTMHVATRESEFEAFAKKREHILDDDSVETALAFDLLSGLLDSELRELENFITTLEADFVKAHELISSYTELG 142 (617)
Q Consensus 63 Kl~NL~~l~M~l~~~~~~~E~~~~~~~~i~~~~s~ekaleFDlL~gilDSEv~Ele~~~~tlq~~I~~~~~~i~s~~~~g 142 (617)
|..=||.++=++.....++..+..+ . .+|.+|-.+|+ .-+...+++|..-+..++..+..... +.+..
T Consensus 240 ~~tLL~~l~~~~~~~~~~~~~~~~e---L---~~v~~a~~~~~--~~l~~~i~~l~~~~~~~~~~l~~~~~----~~~~~ 307 (370)
T PF02181_consen 240 KTTLLHYLVKIVEEKFPDLLDLEDE---L---SSVEKASKVSL--DELEQDIKELEKGLEKIKKELEAIEK----DEEDD 307 (370)
T ss_dssp TSBHHHHHHHHHHTTSGGGGGHHHH---T---TTHHHCCTS-H--HHHHHHHHHHHHHHHHHHHHHHHCCT----TSSTT
T ss_pred CchHHHHHHHHHHhcChHHhccHHH---H---hhHHhhhhhhH--HHHHHHHHHHHHHHHHHHHHHHhccc----cccch
Confidence 3333555555555444444433322 2 22344333332 12556677777777777776666655 33344
Q ss_pred hhhHH-HHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 007114 143 KASIE-MEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTL 180 (617)
Q Consensus 143 ~~f~~-~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~ 180 (617)
..|.. |..-+..++..+...+..+.+++.....+-..+
T Consensus 308 ~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yf 346 (370)
T PF02181_consen 308 DKFKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYF 346 (370)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555 999999999999999999999987655554444
No 358
>PRK04406 hypothetical protein; Provisional
Probab=20.94 E-value=3.9e+02 Score=23.29 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhch
Q 007114 243 RQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQRE 309 (617)
Q Consensus 243 ~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~RE 309 (617)
......+..|+...|--..|.|...+.++.-.++---.+..|....+.+.+||...+....+....|
T Consensus 3 ~~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~~~~~~~~~e 69 (75)
T PRK04406 3 EKTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMDSSNLADPAEE 69 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCC
No 359
>PRK02119 hypothetical protein; Provisional
Probab=20.93 E-value=3.4e+02 Score=23.40 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=27.4
Q ss_pred hhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhh
Q 007114 251 FRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFN 301 (617)
Q Consensus 251 ~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~ 301 (617)
.|+...|--..|.|...+.++.-.++---....|....+.+..||...+..
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~~~ 59 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQPS 59 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 344444444445555555555555555555555666666666666655543
No 360
>TIGR01808 CM_M_hiGC-arch monofunctional chorismate mutase, high GC gram positive type. This model represents the monofunctional chorismate mutase from high GC gram-positive bacteria and archaea. Trusted annotations from Corynebacterium and Pyrococcus are aparrently the sole chorismate mutase enzymes in their respective genomes. This is coupled with the presence in those genomes of the enzymes of the chorismate pathways both up- and downstream of chorismate mutase.
Probab=20.81 E-value=1.7e+02 Score=25.01 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=37.9
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHH
Q 007114 451 EISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERE 499 (617)
Q Consensus 451 EL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErE 499 (617)
||..+|.....+-.+|-.+...++..+.+||.-++.---=+.+-..|.+
T Consensus 1 ~l~~lR~~ID~ID~~ii~LL~~R~~~~~~i~~~K~~~~~~i~d~~RE~~ 49 (74)
T TIGR01808 1 EIDTLREEIDRLDAEILALVKRRAEISQAIGKARMASGGTRLVHSREMK 49 (74)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 5778999999999999999999999999999887754323334444444
No 361
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.61 E-value=3.1e+02 Score=31.59 Aligned_cols=25 Identities=8% Similarity=-0.087 Sum_probs=15.1
Q ss_pred ccccccccccCCch--hHHHHHHHHHH
Q 007114 576 SEVGTLRRIDAGLL--TSKHFFIAVLI 600 (617)
Q Consensus 576 ~~~~tvr~i~~~~l--~~k~i~~a~lv 600 (617)
|.|=-.|.+++++| +|+|=+--|||
T Consensus 240 P~Pv~lRi~~~aiLPN~~~~dl~gC~v 266 (475)
T PRK13729 240 TVPMQLRITGLVEMPNSKTYDATGCFV 266 (475)
T ss_pred CccEEEEEcccccCCCCcccccCCcEE
Confidence 44445677777777 66665554443
No 362
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=20.55 E-value=8.4e+02 Score=28.22 Aligned_cols=78 Identities=23% Similarity=0.356 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHH
Q 007114 412 DMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLV 491 (617)
Q Consensus 412 dMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv 491 (617)
++-++|-.+|. .+.+...|-..|-.|.+|-.-||.|-.++..+..++-.... .-..+=.
T Consensus 60 TlrTlva~~k~-----------~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~----------~~~~~~~ 118 (472)
T TIGR03752 60 TLRTLVAEVKE-----------LRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSET----------QELTKEI 118 (472)
T ss_pred hHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh----------HHHHHHH
Q ss_pred HHHHHHHHHHHHhhhhhhh
Q 007114 492 MQMAVERERLRQQISSLAM 510 (617)
Q Consensus 492 ~QLa~ErErL~~Qissl~~ 510 (617)
.||..||.+++.+|..|..
T Consensus 119 ~ql~~~~~~~~~~l~~l~~ 137 (472)
T TIGR03752 119 EQLKSERQQLQGLIDQLQR 137 (472)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 363
>TIGR01801 CM_A chorismate mutase domain of gram positive AroA protein. This model represents a small clade of chorismate mutase domains N-terminally fused to the first enzyme in the chorismate pathway, 2-dehydro-3-deoxyphosphoheptanoate aldolase (DAHP synthetase, AroA) which are found in some gram positive species and Deinococcus. Only in Deinococcus, where this domain is the sole CM domain in the genome can a trusted assignment of function be made. In the other species there is at least one other trusted CM domain present. The similarity between the Deinococcus gene and the others in this clade is sufficiently strong (~44% identity), that the whole clade can be trusted to be functional. The possibility exists, however, that in the gram positive species the fusion to the first enzyme in the pathway has evolved a separate, regulatory role.
Probab=20.54 E-value=1.3e+02 Score=27.27 Aligned_cols=50 Identities=14% Similarity=0.103 Sum_probs=38.3
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHH
Q 007114 450 EEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERE 499 (617)
Q Consensus 450 eEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErE 499 (617)
.+|..||.+...+-.+|..+...++..|.+||.-++.---=|-+-+.|++
T Consensus 4 ~~L~~lR~~ID~ID~eIl~LL~eR~~~~~~Ig~~K~~~~~~i~dp~RE~~ 53 (102)
T TIGR01801 4 QSLEDLRAEVDQLNRQILALISRRGEVVAQIGHAKSAQGPNHYDPAREEQ 53 (102)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCChHHHHH
Confidence 35888999999999999999999999999998877643222334444444
No 364
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.40 E-value=6e+02 Score=22.38 Aligned_cols=84 Identities=17% Similarity=0.174 Sum_probs=45.0
Q ss_pred HhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhh
Q 007114 404 NMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIR 483 (617)
Q Consensus 404 n~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~ 483 (617)
..++.++..|-.-|+.|+....+... ..|..-++ .||..|.. .||..|++.-..|.... .-.
T Consensus 15 e~~~~e~~~L~~~~~~L~~~~R~~~G---------edL~~Ls~---~eL~~LE~---~Le~aL~~VR~rK~~~l---~~~ 76 (100)
T PF01486_consen 15 EELQQEIAKLRKENESLQKELRHLMG---------EDLESLSL---KELQQLEQ---QLESALKRVRSRKDQLL---MEQ 76 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc---------ccccccch---HHHHHHHH---hhhhhHHHHHHHHHHHH---HHH
Confidence 34555566666666666654444321 11222222 45666654 46677777777766532 223
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 007114 484 TKVITNLVMQMAVERERLRQQI 505 (617)
Q Consensus 484 tK~i~dLv~QLa~ErErL~~Qi 505 (617)
...+..=+..|..|...|+.+|
T Consensus 77 i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 77 IEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444566677777777765
No 365
>smart00340 HALZ homeobox associated leucin zipper.
Probab=20.23 E-value=94 Score=25.18 Aligned_cols=21 Identities=33% Similarity=0.305 Sum_probs=18.8
Q ss_pred HHhhHHHhhhhhHHHHHhhHh
Q 007114 437 KLIILSEANAGLTEEISFLRD 457 (617)
Q Consensus 437 kc~~LtEtN~eLneEL~fLks 457 (617)
=|..||+.|-.|..|+.-||+
T Consensus 13 cce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 13 CCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 478899999999999999886
No 366
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=20.22 E-value=7.7e+02 Score=23.62 Aligned_cols=33 Identities=6% Similarity=0.127 Sum_probs=12.9
Q ss_pred HHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhh
Q 007114 396 AEASLEKQNMLYSTVKDMENLIQDLKLKVSKAD 428 (617)
Q Consensus 396 aea~~eeqn~l~S~IsdMEnvIEeLK~KvskAE 428 (617)
++..+.+...+...++++..-|+.++..|..-|
T Consensus 84 ~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le 116 (126)
T PF07889_consen 84 SKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLE 116 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444443333
No 367
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=20.17 E-value=9e+02 Score=25.55 Aligned_cols=32 Identities=6% Similarity=0.036 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007114 312 LRSKLDSLVKQVEVKESVIASLRENLSEAQAR 343 (617)
Q Consensus 312 l~sKLkslEeqL~~len~~e~LKe~i~~AEsr 343 (617)
+...+.+++.++..++..+...+.++..|+.+
T Consensus 97 ~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~ 128 (370)
T PRK11578 97 AENQIKEVEATLMELRAQRQQAEAELKLARVT 128 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
Done!