Query 007114
Match_columns 617
No_of_seqs 58 out of 60
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 17:31:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007114.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007114hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 99.0 8.9E-06 3.1E-10 73.5 35.4 104 249-352 18-121 (284)
2 1c1g_A Tropomyosin; contractIl 98.9 3.7E-05 1.3E-09 69.4 33.5 17 450-466 209-225 (284)
3 1i84_S Smooth muscle myosin he 98.2 2.2E-06 7.6E-11 99.0 10.1 98 404-512 1070-1167(1184)
4 1i84_S Smooth muscle myosin he 98.2 1.4E-06 4.8E-11 100.6 6.8 6 500-505 1120-1125(1184)
5 2efr_A General control protein 98.2 0.00011 3.9E-09 68.9 18.1 107 333-470 26-132 (155)
6 2efr_A General control protein 96.7 0.23 8E-06 46.7 19.8 42 325-366 74-115 (155)
7 2b9c_A Striated-muscle alpha t 96.6 0.021 7.1E-07 53.0 11.6 117 333-480 22-138 (147)
8 2v71_A Nuclear distribution pr 96.4 0.47 1.6E-05 45.9 20.1 145 255-419 7-155 (189)
9 3vkg_A Dynein heavy chain, cyt 96.0 1.3 4.6E-05 57.1 26.9 70 448-517 2033-2105(3245)
10 3na7_A HP0958; flagellar bioge 95.7 1 3.6E-05 43.9 19.6 81 406-494 58-141 (256)
11 3o0z_A RHO-associated protein 95.7 0.64 2.2E-05 44.4 17.2 132 371-516 4-138 (168)
12 3vkg_A Dynein heavy chain, cyt 95.5 0.92 3.2E-05 58.5 22.9 94 371-464 2012-2105(3245)
13 3na7_A HP0958; flagellar bioge 95.5 1.3 4.5E-05 43.2 19.2 58 371-428 51-110 (256)
14 2dfs_A Myosin-5A; myosin-V, in 95.4 0.49 1.7E-05 55.2 18.4 21 55-75 452-475 (1080)
15 3u1c_A Tropomyosin alpha-1 cha 95.1 0.18 6.1E-06 43.8 10.7 67 329-398 10-76 (101)
16 2dfs_A Myosin-5A; myosin-V, in 94.8 0.35 1.2E-05 56.4 15.2 77 316-395 930-1006(1080)
17 3oja_B Anopheles plasmodium-re 94.8 0.34 1.2E-05 50.9 13.7 120 235-354 454-577 (597)
18 3oja_B Anopheles plasmodium-re 93.6 0.72 2.5E-05 48.4 13.2 105 320-424 455-560 (597)
19 2v71_A Nuclear distribution pr 93.2 4.5 0.00015 39.2 16.9 71 437-515 110-180 (189)
20 3u59_A Tropomyosin beta chain; 92.7 1.7 5.8E-05 37.4 12.0 66 329-397 10-75 (101)
21 2b9c_A Striated-muscle alpha t 92.6 3.9 0.00013 37.9 15.0 142 292-443 2-143 (147)
22 3o0z_A RHO-associated protein 92.4 8 0.00027 37.0 19.4 110 314-428 6-117 (168)
23 2fxo_A Myosin heavy chain, car 92.3 5.9 0.0002 35.4 16.7 60 431-490 64-123 (129)
24 3u59_A Tropomyosin beta chain; 91.2 2.4 8.1E-05 36.5 11.2 82 362-443 8-93 (101)
25 3u1c_A Tropomyosin alpha-1 cha 90.1 7.3 0.00025 33.7 13.3 55 417-471 11-65 (101)
26 1ic2_A Tropomyosin alpha chain 89.9 2.9 9.8E-05 34.8 10.1 66 329-397 7-72 (81)
27 2fxo_A Myosin heavy chain, car 87.0 16 0.00055 32.5 16.0 110 332-465 17-126 (129)
28 3mq9_A Bone marrow stromal ant 86.8 6.4 0.00022 40.5 12.6 74 325-398 394-468 (471)
29 2ocy_A RAB guanine nucleotide 86.8 20 0.00068 33.8 14.8 29 235-263 4-32 (154)
30 3tnu_B Keratin, type II cytosk 85.3 10 0.00035 33.7 11.5 108 330-457 17-124 (129)
31 3cve_A Homer protein homolog 1 83.7 6.9 0.00023 32.9 9.0 64 312-378 5-68 (72)
32 3tnu_A Keratin, type I cytoske 83.5 10 0.00035 33.8 10.8 108 330-457 19-126 (131)
33 1m1j_B Fibrinogen beta chain; 83.3 18 0.00063 39.1 14.5 92 326-429 98-189 (464)
34 2eqb_B RAB guanine nucleotide 83.2 8.4 0.00029 34.0 9.8 44 311-354 9-52 (97)
35 3hnw_A Uncharacterized protein 81.7 5 0.00017 36.7 8.2 51 312-362 73-123 (138)
36 1ic2_A Tropomyosin alpha chain 81.4 8.8 0.0003 31.8 8.9 55 417-471 8-62 (81)
37 3ol1_A Vimentin; structural ge 81.3 16 0.00055 32.4 11.1 16 410-425 43-58 (119)
38 3ghg_A Fibrinogen alpha chain; 80.6 19 0.00064 39.9 13.4 136 318-470 54-189 (562)
39 3s4r_A Vimentin; alpha-helix, 78.0 17 0.00057 31.2 9.8 71 371-465 21-92 (93)
40 3swk_A Vimentin; cytoskeleton, 77.4 27 0.00091 29.6 10.8 43 385-427 19-61 (86)
41 3cvf_A Homer-3, homer protein 76.9 10 0.00036 32.3 8.1 63 313-378 12-74 (79)
42 1x79_B RAB GTPase binding effe 76.5 41 0.0014 30.3 12.2 73 441-520 36-108 (112)
43 3bas_A Myosin heavy chain, str 75.3 23 0.00078 30.0 9.8 37 320-356 13-49 (89)
44 2jee_A YIIU; FTSZ, septum, coi 74.8 17 0.00059 31.1 8.9 57 409-465 21-77 (81)
45 1sjj_A Actinin; 3-helix bundle 73.2 1.2E+02 0.004 33.6 24.4 93 371-467 576-669 (863)
46 4emc_A Monopolin complex subun 69.9 13 0.00043 36.3 7.8 58 340-397 11-72 (190)
47 3i00_A HIP-I, huntingtin-inter 69.4 13 0.00046 33.5 7.4 70 371-444 45-114 (120)
48 3bas_A Myosin heavy chain, str 66.2 59 0.002 27.4 10.4 29 432-460 59-87 (89)
49 3mq9_A Bone marrow stromal ant 64.0 70 0.0024 32.8 12.5 58 372-439 396-453 (471)
50 3hnw_A Uncharacterized protein 63.7 26 0.00088 32.1 8.2 58 403-467 77-134 (138)
51 3tnu_B Keratin, type II cytosk 62.1 69 0.0023 28.4 10.5 28 446-473 46-73 (129)
52 4ev6_A Magnesium transport pro 61.1 1.4E+02 0.0047 29.8 14.4 58 104-180 156-213 (339)
53 1t2k_D Cyclic-AMP-dependent tr 61.0 20 0.0007 28.1 6.2 36 431-466 24-59 (61)
54 3a7p_A Autophagy protein 16; c 58.7 1.1E+02 0.0037 29.0 11.5 59 435-503 88-146 (152)
55 1gk4_A Vimentin; intermediate 57.6 82 0.0028 26.2 9.9 69 372-457 7-75 (84)
56 4dvy_P Cytotoxicity-associated 56.4 1.5E+02 0.005 33.6 13.7 100 224-333 618-734 (876)
57 3oja_A Leucine-rich immune mol 55.3 1.3E+02 0.0043 31.0 12.7 19 409-427 415-433 (487)
58 2v4h_A NF-kappa-B essential mo 54.3 83 0.0028 28.4 9.6 65 310-402 27-91 (110)
59 3tnu_A Keratin, type I cytoske 53.5 93 0.0032 27.6 9.9 25 447-471 49-73 (131)
60 3s4r_A Vimentin; alpha-helix, 53.4 79 0.0027 27.1 9.0 67 350-423 24-92 (93)
61 3swk_A Vimentin; cytoskeleton, 51.7 1E+02 0.0036 26.0 9.4 75 437-515 8-82 (86)
62 3nvo_A Zinc transport protein 51.6 98 0.0033 29.2 10.3 58 103-180 146-203 (264)
63 4egw_A Magnesium transport pro 50.9 1.8E+02 0.006 28.0 12.7 58 104-180 156-213 (280)
64 2wt7_A Proto-oncogene protein 50.2 44 0.0015 26.5 6.5 37 431-467 25-61 (63)
65 1deq_A Fibrinogen (alpha chain 50.2 2.4E+02 0.0083 30.2 13.8 107 318-441 57-167 (390)
66 2e7s_A RAB guanine nucleotide 49.9 11 0.00038 34.9 3.4 39 314-352 32-70 (135)
67 3ghg_B Fibrinogen beta chain; 48.9 1.2E+02 0.0042 33.0 11.6 34 321-354 88-121 (461)
68 2iub_A CORA, divalent cation t 48.6 2.3E+02 0.0077 28.6 13.8 35 104-138 180-214 (363)
69 3mq7_A Bone marrow stromal ant 48.3 1.6E+02 0.0056 26.9 11.9 78 325-402 22-100 (121)
70 3qh9_A Liprin-beta-2; coiled-c 47.4 79 0.0027 27.2 7.9 55 447-508 23-80 (81)
71 4emc_A Monopolin complex subun 46.6 73 0.0025 31.1 8.6 44 426-469 10-53 (190)
72 3ghg_A Fibrinogen alpha chain; 45.9 1.5E+02 0.005 33.1 11.7 46 307-352 117-162 (562)
73 1v9d_A Diaphanous protein homo 45.3 1.2E+02 0.0041 30.6 10.4 106 63-183 176-282 (340)
74 3htk_A Structural maintenance 45.1 85 0.0029 24.0 7.3 54 314-367 5-58 (60)
75 3r6n_A Desmoplakin; spectrin r 44.5 3.2E+02 0.011 29.1 15.9 228 75-336 15-264 (450)
76 2v66_B Nuclear distribution pr 42.8 1.9E+02 0.0064 26.0 14.0 94 307-417 3-100 (111)
77 1ux5_A BNI1 protein; structura 42.6 1.1E+02 0.0037 31.6 9.8 104 67-183 261-367 (411)
78 1x8y_A Lamin A/C; structural p 42.1 79 0.0027 26.6 7.1 67 376-459 13-79 (86)
79 2jee_A YIIU; FTSZ, septum, coi 41.2 1.3E+02 0.0044 25.8 8.3 45 325-369 24-68 (81)
80 3cve_A Homer protein homolog 1 40.7 1.4E+02 0.0048 25.0 8.3 19 378-396 19-37 (72)
81 2v66_B Nuclear distribution pr 40.6 2E+02 0.0069 25.7 13.1 96 347-452 1-100 (111)
82 3ol1_A Vimentin; structural ge 38.8 2E+02 0.007 25.3 13.6 53 372-424 26-78 (119)
83 3ghg_C Fibrinogen gamma chain; 38.5 2.7E+02 0.0094 29.8 12.2 34 322-355 32-65 (411)
84 2v4h_A NF-kappa-B essential mo 38.3 2.3E+02 0.0077 25.6 9.9 22 330-351 26-47 (110)
85 1jnm_A Proto-oncogene C-JUN; B 37.8 20 0.00069 28.3 2.7 36 431-466 24-59 (62)
86 3jsv_C NF-kappa-B essential mo 37.7 2.1E+02 0.0073 25.2 9.8 64 311-402 6-69 (94)
87 2j1d_G DAAM1, disheveled-assoc 37.6 1.4E+02 0.0047 31.8 9.8 108 62-183 257-365 (483)
88 3oja_A Leucine-rich immune mol 37.6 3.5E+02 0.012 27.7 16.0 27 206-232 326-352 (487)
89 3mov_A Lamin-B1; LMNB1, B-type 36.5 1.1E+02 0.0039 26.3 7.4 70 371-457 17-86 (95)
90 3cvf_A Homer-3, homer protein 36.3 1.5E+02 0.0052 25.2 8.0 22 377-398 24-45 (79)
91 3u06_A Protein claret segregat 36.2 79 0.0027 33.3 7.7 53 445-508 5-57 (412)
92 1m1j_C Fibrinogen gamma chain; 35.5 3.2E+02 0.011 29.1 12.1 19 373-391 84-102 (409)
93 1gd2_E Transcription factor PA 35.0 49 0.0017 27.4 4.7 45 471-515 25-69 (70)
94 3cl3_D NF-kappa-B essential mo 34.7 27 0.00091 32.4 3.3 45 291-335 7-51 (130)
95 2w6a_A ARF GTPase-activating p 34.6 68 0.0023 26.4 5.3 40 419-465 17-56 (63)
96 3mud_A DNA repair protein XRCC 34.1 44 0.0015 32.2 4.8 53 418-470 105-169 (175)
97 2e7s_A RAB guanine nucleotide 32.6 89 0.003 29.0 6.4 47 417-470 84-130 (135)
98 4etp_A Kinesin-like protein KA 32.1 90 0.0031 32.7 7.2 54 371-424 8-61 (403)
99 2k48_A Nucleoprotein; viral pr 32.0 54 0.0018 29.5 4.7 58 284-341 26-102 (107)
100 4gkw_A Spindle assembly abnorm 31.0 3.4E+02 0.012 25.5 16.8 91 325-429 22-116 (167)
101 3m48_A General control protein 30.2 36 0.0012 25.0 2.7 29 343-371 1-29 (33)
102 4dnd_A Syntaxin-10, SYN10; str 29.6 3E+02 0.01 24.8 9.3 62 363-428 63-125 (130)
103 4dk0_A Putative MACA; alpha-ha 29.5 2.2E+02 0.0076 27.8 9.2 31 321-351 70-100 (369)
104 4dvz_A Cytotoxicity-associated 28.8 6.1E+02 0.021 27.7 16.2 35 270-304 407-441 (569)
105 2zqm_A Prefoldin beta subunit 28.3 2.6E+02 0.009 23.3 10.0 98 359-470 6-111 (117)
106 1ci6_A Transcription factor AT 28.0 1E+02 0.0036 24.5 5.4 34 431-464 25-58 (63)
107 4dk0_A Putative MACA; alpha-ha 27.5 2.4E+02 0.0083 27.5 9.1 30 313-342 69-98 (369)
108 3t98_B Nucleoporin NUP58/NUP45 27.4 1.8E+02 0.0061 25.2 7.1 64 447-510 16-79 (93)
109 3etw_A Adhesin A; antiparallel 26.5 3.6E+02 0.012 24.4 12.0 19 310-328 5-23 (119)
110 1m1j_C Fibrinogen gamma chain; 25.8 5.9E+02 0.02 27.1 12.1 19 445-463 86-104 (409)
111 3a7o_A Autophagy protein 16; c 25.5 3.1E+02 0.01 23.3 7.9 26 497-522 47-72 (75)
112 4fla_A Regulation of nuclear P 25.4 4.1E+02 0.014 24.6 9.7 49 351-402 81-129 (152)
113 3mq7_A Bone marrow stromal ant 25.4 4E+02 0.014 24.4 11.7 29 372-400 24-52 (121)
114 1lwu_C Fibrinogen gamma chain; 24.8 1.5E+02 0.0053 30.5 7.3 26 373-398 5-30 (323)
115 1m1j_B Fibrinogen beta chain; 24.3 7.1E+02 0.024 27.0 14.7 22 499-520 178-199 (464)
116 4aj5_K Spindle and kinetochore 23.0 4.4E+02 0.015 24.2 10.8 85 412-521 2-96 (123)
117 2oxj_A Hybrid alpha/beta pepti 22.9 60 0.0021 24.0 2.8 28 343-370 2-29 (34)
118 1wt6_A Myotonin-protein kinase 22.6 3.3E+02 0.011 23.4 7.7 40 359-398 17-56 (81)
119 1uo4_A General control protein 22.3 63 0.0022 23.9 2.8 28 343-370 2-29 (34)
120 4i1l_A Scurfin, forkhead box p 22.1 1.5E+02 0.0052 26.1 5.6 34 474-507 42-75 (93)
121 3fpp_A Macrolide-specific effl 22.1 2.7E+02 0.0092 26.9 8.2 28 321-348 69-96 (341)
122 1hjb_A Ccaat/enhancer binding 21.9 1.2E+02 0.004 26.1 4.9 40 429-468 36-75 (87)
123 2bbh_A Divalent cation transpo 21.4 2.6E+02 0.0089 26.3 7.7 68 105-184 172-239 (269)
124 1gs9_A Apolipoprotein E, APOE4 21.2 3.8E+02 0.013 24.9 8.6 72 103-180 45-122 (165)
125 2zqm_A Prefoldin beta subunit 21.1 3.4E+02 0.012 22.6 7.6 32 302-333 15-46 (117)
126 1fxk_A Prefoldin; archaeal pro 20.8 3.5E+02 0.012 22.3 7.6 31 303-333 11-41 (107)
127 1fxk_A Prefoldin; archaeal pro 20.8 3.5E+02 0.012 22.2 9.7 40 360-399 2-41 (107)
128 3qh9_A Liprin-beta-2; coiled-c 20.7 3.3E+02 0.011 23.5 7.3 45 365-409 25-69 (81)
129 3c3g_A Alpha/beta peptide with 20.4 73 0.0025 23.4 2.8 29 343-371 1-29 (33)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.01 E-value=8.9e-06 Score=73.47 Aligned_cols=104 Identities=13% Similarity=0.117 Sum_probs=38.5
Q ss_pred HHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHH
Q 007114 249 LKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKES 328 (617)
Q Consensus 249 Lk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len 328 (617)
+..++...+.+...++.....+...+-++....+-+......+...++..+..+.....+=..+...+..+.+.+..++.
T Consensus 18 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (284)
T 1c1g_A 18 ALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEE 97 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333322223333333333333333333
Q ss_pred HHHHHHHHHHHHHhhhhhhhHhhh
Q 007114 329 VIASLRENLSEAQARADGAEVRCK 352 (617)
Q Consensus 329 ~~e~LKe~i~~AEsra~~aeskc~ 352 (617)
.+..+...+..+..+...+..++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~l~ 121 (284)
T 1c1g_A 98 ELDRAQERLATALQKLEEAEKAAD 121 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333333333333333
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.85 E-value=3.7e-05 Score=69.42 Aligned_cols=17 Identities=6% Similarity=0.098 Sum_probs=6.1
Q ss_pred HHHHhhHhHHHHHHHHH
Q 007114 450 EEISFLRDRLECLEASL 466 (617)
Q Consensus 450 eEL~fLksr~~~LE~~L 466 (617)
.++..+......++..+
T Consensus 209 ~~~~~~~~~~~~~~~~l 225 (284)
T 1c1g_A 209 AQAEKYSQKEDKYEEEI 225 (284)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.24 E-value=2.2e-06 Score=98.99 Aligned_cols=98 Identities=14% Similarity=0.205 Sum_probs=0.0
Q ss_pred HhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhh
Q 007114 404 NMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIR 483 (617)
Q Consensus 404 n~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~ 483 (617)
..+..++.+++.-+..++.++.+.+.+.+....+...+...-.++..++..++.++..|+..|.+.....
T Consensus 1070 ~~l~~el~el~~el~~le~~l~~le~el~~l~~~le~l~~~~~~le~~l~~Le~eie~L~eeLee~~~~~---------- 1139 (1184)
T 1i84_S 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAAR---------- 1139 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 3344445555555555555555555555555445444444445555666666666666665555432111
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 007114 484 TKVITNLVMQMAVERERLRQQISSLAMEN 512 (617)
Q Consensus 484 tK~i~dLv~QLa~ErErL~~Qissl~~eN 512 (617)
.-...-...|..+.+.|+.+|..+...|
T Consensus 1140 -~~le~q~~~L~~ele~L~~~Ieel~~vn 1167 (1184)
T 1i84_S 1140 -NKAEKQKRDLSEELEALKTELEDTLDTT 1167 (1184)
T ss_dssp -----------------------------
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 1111122345566677777777665544
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.18 E-value=1.4e-06 Score=100.62 Aligned_cols=6 Identities=33% Similarity=0.567 Sum_probs=0.0
Q ss_pred HHHHhh
Q 007114 500 RLRQQI 505 (617)
Q Consensus 500 rL~~Qi 505 (617)
+|+.+|
T Consensus 1120 ~Le~ei 1125 (1184)
T 1i84_S 1120 ELESHI 1125 (1184)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 333333
No 5
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=98.17 E-value=0.00011 Score=68.88 Aligned_cols=107 Identities=22% Similarity=0.316 Sum_probs=80.7
Q ss_pred HHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhh
Q 007114 333 LRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKD 412 (617)
Q Consensus 333 LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~Isd 412 (617)
+-.++.+||.|+..|+++|..|.+. +...-+.+|..+.+-..+..--+ .
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEee-----------------L~~v~~nlKsLE~seekasqrEd--------------~ 74 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEE-----------------LKTVTNNLKSLEAQAEKYSQKED--------------K 74 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHH--------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhhccchhhhhHHHHHHH--------------H
Confidence 7778889999999999999988432 33333444444443333333333 4
Q ss_pred hHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHH
Q 007114 413 MENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAE 470 (617)
Q Consensus 413 MEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~ 470 (617)
+|.-|..|..++-.||+||+-||..+..|-.+.-.|-.+|..-|-+...+...|.+..
T Consensus 75 yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl 132 (155)
T 2efr_A 75 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLE 132 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555999999999999999999999999999999999999999888888888887443
No 6
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.70 E-value=0.23 Score=46.67 Aligned_cols=42 Identities=31% Similarity=0.351 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhh
Q 007114 325 VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLK 366 (617)
Q Consensus 325 ~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~ 366 (617)
.++..|..|..++.+||.||..|+..+..|..+.-.|..+|.
T Consensus 74 ~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~ 115 (155)
T 2efr_A 74 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELY 115 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556778888889999999999999888777555554444
No 7
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=96.56 E-value=0.021 Score=53.00 Aligned_cols=117 Identities=23% Similarity=0.267 Sum_probs=71.5
Q ss_pred HHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhh
Q 007114 333 LRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKD 412 (617)
Q Consensus 333 LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~Isd 412 (617)
...++..|+..|+.++.-|+-|...... -.+|+..||.||++....+..|.--.+.. .-+
T Consensus 22 a~~kLeeaek~adE~eR~~k~lE~r~~~----------deEr~~~lE~qLkeak~~aeeadrKyeE~-------~RK--- 81 (147)
T 2b9c_A 22 ALQKLEEAEKAADESERGMKVIESRAQK----------DEEKMEIQEIQLKEAKHIAEDADRKYEEV-------ARK--- 81 (147)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc----------cHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHH---
Confidence 3344455666666666666666433321 34577777887777766665554433322 222
Q ss_pred hHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhh
Q 007114 413 MENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDI 480 (617)
Q Consensus 413 MEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI 480 (617)
+.-+-..+.+||-||+.||.+|. +|.+||...-..+.+||.+=.++...-...-..|
T Consensus 82 ----l~~~E~dLeraeeRae~aE~k~~-------eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I 138 (147)
T 2b9c_A 82 ----LVIIESDLERAEERAELSEGKCA-------ELEEELKTVTNNLKSLEDKVEELLSKNYHLENEV 138 (147)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Confidence 44455667799999999999998 5566777777777777766555444433333333
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.35 E-value=0.47 Score=45.93 Aligned_cols=145 Identities=18% Similarity=0.167 Sum_probs=98.1
Q ss_pred hhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007114 255 SFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLR 334 (617)
Q Consensus 255 ~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LK 334 (617)
+.+++..+.-+.+..+..++.+++.-..=|+.-|++| |.+|-.-|..+|++.+++.+-+..|+
T Consensus 7 s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrEL-----------------E~ELE~eL~~~Ek~~~~L~~~~~~L~ 69 (189)
T 2v71_A 7 SLKEETAYWKELSMKYKQSFQEARDELVEFQEGSREL-----------------EAELEAQLVQAEQRNRDLQADNQRLK 69 (189)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666666666666655 56666667777777777777777777
Q ss_pred HHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh----hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhH
Q 007114 335 ENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA----TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTV 410 (617)
Q Consensus 335 e~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~----lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~I 410 (617)
..+..+..|..++-++. ..+-..|..++..|+. +..++..||-.--+++-+..++.+|.+-....+|...-.+
T Consensus 70 ~E~e~~k~K~~~~~~e~---~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~ 146 (189)
T 2v71_A 70 YEVEALKEKLEHQYAQS---YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERN 146 (189)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 77777776666655442 2234456666666666 6667778888888888888888888888777777777777
Q ss_pred hhhHHHHHH
Q 007114 411 KDMENLIQD 419 (617)
Q Consensus 411 sdMEnvIEe 419 (617)
.=||+=+++
T Consensus 147 alLE~El~E 155 (189)
T 2v71_A 147 AFLESELDE 155 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665553
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.99 E-value=1.3 Score=57.09 Aligned_cols=70 Identities=13% Similarity=0.131 Sum_probs=48.4
Q ss_pred hHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhh---hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 007114 448 LTEEISFLRDRLECLEASLHQAEETKLATAKDIG---IRTKVITNLVMQMAVERERLRQQISSLAMENKVMVV 517 (617)
Q Consensus 448 LneEL~fLksr~~~LE~~L~qa~~~K~stakdI~---~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L~~ 517 (617)
...+|+.+..++..|+.++.++..+|..--.++. .+-..-..|+..|+.|+.|=..++..+...-.-|+-
T Consensus 2033 ~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~G 2105 (3245)
T 3vkg_A 2033 IVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVG 2105 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccH
Confidence 3455666666666676666666666655444443 344556789999999999999999888776555543
No 10
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.72 E-value=1 Score=43.87 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=40.0
Q ss_pred HHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhh---hhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhh
Q 007114 406 LYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEAN---AGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGI 482 (617)
Q Consensus 406 l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN---~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~ 482 (617)
+...++.+++-|.+++.++.+.+. +...-+ +| -.|..|+.+++.+...||..+..+.......-+.+.-
T Consensus 58 ~~~~~~~~e~~i~~~~~ri~~~~~-------~l~~v~-~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~ 129 (256)
T 3na7_A 58 LKLQVSKNEQTLQDTNAKIASIQK-------KMSEIK-SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQED 129 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHCS-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455555555555555555443 332222 22 2466777777777777777776444444333333333
Q ss_pred hhHHHHHHHHHH
Q 007114 483 RTKVITNLVMQM 494 (617)
Q Consensus 483 ~tK~i~dLv~QL 494 (617)
.+.-+.++-..|
T Consensus 130 ~~~~l~~~~~~l 141 (256)
T 3na7_A 130 LKKEMLELEKLA 141 (256)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 11
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.67 E-value=0.64 Score=44.45 Aligned_cols=132 Identities=16% Similarity=0.209 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHH
Q 007114 371 TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTE 450 (617)
Q Consensus 371 lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLne 450 (617)
.++|+..||+||.|.+..+..-.-++.-.+..+..+.-.++..|..+-||++++...++--...+..|+.|-.. |.+
T Consensus 4 ~neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~---L~q 80 (168)
T 3o0z_A 4 ANEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAI---LEA 80 (168)
T ss_dssp ------CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 47899999999999999999888888888888888999999999999999998887776555555555444322 122
Q ss_pred HHHhhH---hHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 007114 451 EISFLR---DRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMV 516 (617)
Q Consensus 451 EL~fLk---sr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L~ 516 (617)
|=.... ....+|+.++..+..+ -+-.+.--++...|+.+|+..|+.+=++..-+-
T Consensus 81 Er~~r~q~se~~~elq~ri~~L~~E-----------l~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 81 ERRDRGHDSEMIGDLQARITSLQEE-----------VKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 211100 0233344433322211 111223345566777788888888877666554
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.53 E-value=0.92 Score=58.53 Aligned_cols=94 Identities=16% Similarity=0.144 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHH
Q 007114 371 TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTE 450 (617)
Q Consensus 371 lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLne 450 (617)
+++++..+|++++..+.+|..+.+.....++++..+..+....-.=.+.|+..+...+.|.+.|+.=..+|+..+.-=++
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~ 2091 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQ 2091 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHH
Confidence 67788888888888888888877777777777777776666666667778888888888888888888889888888888
Q ss_pred HHHhhHhHHHHHHH
Q 007114 451 EISFLRDRLECLEA 464 (617)
Q Consensus 451 EL~fLksr~~~LE~ 464 (617)
.+..|+.+...|=.
T Consensus 2092 ~~~~l~~~~~~L~G 2105 (3245)
T 3vkg_A 2092 QSENFNTQMSTVVG 2105 (3245)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccH
Confidence 88777776555533
No 13
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.48 E-value=1.3 Score=43.19 Aligned_cols=58 Identities=16% Similarity=0.125 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHH--HhHhhhHHHHHHHHHhhhhhh
Q 007114 371 TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLY--STVKDMENLIQDLKLKVSKAD 428 (617)
Q Consensus 371 lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~--S~IsdMEnvIEeLK~KvskAE 428 (617)
+...+..++.+++..+..+..+.+....++.+++... -++..|..=|+.++..+..+|
T Consensus 51 ~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE 110 (256)
T 3na7_A 51 LEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQAN 110 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666666666665554322 123344444444444333333
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.35 E-value=0.49 Score=55.24 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=13.1
Q ss_pred hhhhccchhh---hhhhHHHHHHh
Q 007114 55 LHIACSSEKL---VNLNILTMHVA 75 (617)
Q Consensus 55 l~la~~SEKl---~NL~~l~M~l~ 75 (617)
|=+-|+-||| +|-++|.++-.
T Consensus 452 lcINy~NEkLQq~F~~~~f~~Eqe 475 (1080)
T 2dfs_A 452 FCINYANEKLQQQFNMHVFKLEQE 475 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHhhHHHHH
Confidence 4456777877 55566666543
No 15
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=95.14 E-value=0.18 Score=43.84 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 007114 329 VIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEA 398 (617)
Q Consensus 329 ~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea 398 (617)
-+..||....+|..|+.+++.+++.+...+.++..++.. |+.|++.+|..|-.++.+|..|....+.
T Consensus 10 Km~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~s---L~kk~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 10 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQ---LEKQLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788889999999999999999999998888887766 4678899999998888877776544443
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.83 E-value=0.35 Score=56.44 Aligned_cols=77 Identities=13% Similarity=0.180 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHh
Q 007114 316 LDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAY 395 (617)
Q Consensus 316 LkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~AS 395 (617)
+..|..+|.+.+..+..|.+.+...+ ...+.+|..|...+-+|.....+++.+..++..|++++.+.+.+++.+...
T Consensus 930 l~eLq~rL~~~e~~n~~L~~~~~~~~---~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke 1006 (1080)
T 2dfs_A 930 IMQLQRKIDEQNKEYKSLLEKMNNLE---ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE 1006 (1080)
T ss_dssp ---------------------CHHHH---HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433333 122344555554444554444444445555555555555555544444433
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.79 E-value=0.34 Score=50.87 Aligned_cols=120 Identities=18% Similarity=0.107 Sum_probs=84.3
Q ss_pred hHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHH----hhcchHHHHhhhHHHHHHhHHHHhhhcccchhchh
Q 007114 235 LEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLF----EAENSAEVLKGISKELLGRLQIVLFNMNGSVQREA 310 (617)
Q Consensus 235 LEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~----EAENa~EvL~g~skel~gkLq~~qf~L~as~~REs 310 (617)
|+..+.+.+.....|+.++...+.....+++.......++- +-....+.+.-.-+.+..+.+..+..+.....+..
T Consensus 454 l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (597)
T 3oja_B 454 LEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEAD 533 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 55566666666777777777777777777766666555554 33444566777777777788888777777777777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhh
Q 007114 311 GLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSL 354 (617)
Q Consensus 311 el~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~L 354 (617)
+.+.+++.++++...|+..+++-|+.+.+.....+....+.++|
T Consensus 534 ~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 534 AKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888887777666655555555554
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.63 E-value=0.72 Score=48.40 Aligned_cols=105 Identities=11% Similarity=0.048 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh-hhHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 007114 320 VKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA-TSEKVESLERQLRESDIQLQHAVAYAEA 398 (617)
Q Consensus 320 EeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~-lsEKv~sLEkQLkEse~QL~~A~ASaea 398 (617)
++.+..+++.+..|++.+...+...+....+.....+.-....+++...+. +.+.+..++......+..++......++
T Consensus 455 ~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (597)
T 3oja_B 455 EAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADA 534 (597)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 334444455555555555544444444444433332221111111111111 2222223333333333334444444445
Q ss_pred HHHHHHhHHHhHhhhHHHHHHHHHhh
Q 007114 399 SLEKQNMLYSTVKDMENLIQDLKLKV 424 (617)
Q Consensus 399 ~~eeqn~l~S~IsdMEnvIEeLK~Kv 424 (617)
.++++..+..++..||..+++.|.++
T Consensus 535 ~~~~~~~~~~~~~~le~~~~~~~~~~ 560 (597)
T 3oja_B 535 KQKETEDLEQENIALEKQLDNKRAKQ 560 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchhhHHhhhHHHHHHHhhhhhHH
Confidence 55554444455555555555555433
No 19
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.20 E-value=4.5 Score=39.18 Aligned_cols=71 Identities=24% Similarity=0.181 Sum_probs=25.9
Q ss_pred HHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 007114 437 KLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVM 515 (617)
Q Consensus 437 kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L 515 (617)
++..|--.|-.|..-.-...+.+.++|.+|.+|-...+=-=-||.- -.+|..+.+||...+.-|..+..++
T Consensus 110 ~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E--------Ke~l~~~~QRLkdE~rDLk~El~v~ 180 (189)
T 2v71_A 110 YVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE--------KESLLVSVQRLKDEARDLRQELAVR 180 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHCCC-----------------
T ss_pred HHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555666666666555444332222220 1244455556655555555554443
No 20
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=92.73 E-value=1.7 Score=37.44 Aligned_cols=66 Identities=21% Similarity=0.261 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHH
Q 007114 329 VIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAE 397 (617)
Q Consensus 329 ~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASae 397 (617)
-+..||....+|..||.+++.+++.+...+.++..++.. ++.|+..||.++-.++.++..+....+
T Consensus 10 Km~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~s---L~kKiq~lE~eld~~~e~l~~a~~kLe 75 (101)
T 3u59_A 10 KMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQG---LQKKLKGTEDEVEKYSESVKEAQEKLE 75 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999999999999999988888877666 466888888888877777665554433
No 21
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=92.62 E-value=3.9 Score=37.89 Aligned_cols=142 Identities=24% Similarity=0.227 Sum_probs=74.9
Q ss_pred HHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhh
Q 007114 292 LGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRAT 371 (617)
Q Consensus 292 ~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~l 371 (617)
.-|++.++-+|.-+.-|=.....||..+++-...-+.....| |+|....+-++..|. .+|++-..-.++.
T Consensus 2 ~Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~l-------E~r~~~deEr~~~lE---~qLkeak~~aeea 71 (147)
T 2b9c_A 2 NRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVI-------ESRAQKDEEKMEIQE---IQLKEAKHIAEDA 71 (147)
T ss_dssp ---------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHH-------HHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhcccHHHHHHHH---HHHHHHHHHHHHH
Confidence 457777888887777776666777766655554333332222 344444444444442 1222222222233
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHH
Q 007114 372 SEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSE 443 (617)
Q Consensus 372 sEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtE 443 (617)
-.|..-..++|.-.+-.|..|..-+++...+.-.+..+|..+-+-+..|.-.-.+|=-|-+.+|.+...|++
T Consensus 72 drKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L~~ 143 (147)
T 2b9c_A 72 DRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARLKK 143 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCC
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444566668888888888888888888888889998888875
No 22
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=92.36 E-value=8 Score=36.99 Aligned_cols=110 Identities=17% Similarity=0.202 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHh--hhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHH
Q 007114 314 SKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVR--CKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQH 391 (617)
Q Consensus 314 sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aesk--c~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~ 391 (617)
+|.-+||+||.++......--+. -|..|-+++|.. ...+...|-+|.+.+..|.. .-..||+++.....||..
T Consensus 6 eKi~~LekQL~E~n~kLk~EsE~--~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~---~k~~Leke~~~LQa~L~q 80 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLRTESDT--AVRLRKSHTEMSKSISQLESLNRELQERNRILEN---SKSQTDKDYYQLQAILEA 80 (168)
T ss_dssp ----CTHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 45556777777553332221111 122222333322 23344444444444444333 233567777777777776
Q ss_pred HHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhh
Q 007114 392 AVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKAD 428 (617)
Q Consensus 392 A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAE 428 (617)
-+...-...+-+..+...|..|..=++.+|....+++
T Consensus 81 Er~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~ 117 (168)
T 3o0z_A 81 ERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVE 117 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665554444433344444444444444444444443
No 23
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.30 E-value=5.9 Score=35.37 Aligned_cols=60 Identities=20% Similarity=0.149 Sum_probs=45.2
Q ss_pred hhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHH
Q 007114 431 ADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNL 490 (617)
Q Consensus 431 Ae~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dL 490 (617)
+..||..|..|.....+|...|.-+.+|+...|.....+...|-..=.++.-.++-|.|+
T Consensus 64 l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 64 LADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567888888888888888888888888888888877777776666666555555554
No 24
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=91.24 E-value=2.4 Score=36.54 Aligned_cols=82 Identities=12% Similarity=0.187 Sum_probs=58.2
Q ss_pred hhhhhhhhh----hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHH
Q 007114 362 NEDLKGSRA----TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEK 437 (617)
Q Consensus 362 ~~el~~Lk~----lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~k 437 (617)
+.++..|+. ..+++..+|.+++..+.....+-....+.+-+...+...+-..+.-..+.+.++-.++.++..||..
T Consensus 8 KkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~e 87 (101)
T 3u59_A 8 KKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAE 87 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555 6788889999999888887777777777766655566666666666666667777777777777777
Q ss_pred HhhHHH
Q 007114 438 LIILSE 443 (617)
Q Consensus 438 c~~LtE 443 (617)
...|+-
T Consensus 88 vasLnR 93 (101)
T 3u59_A 88 VASLNR 93 (101)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766654
No 25
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=90.10 E-value=7.3 Score=33.72 Aligned_cols=55 Identities=33% Similarity=0.314 Sum_probs=49.0
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHH
Q 007114 417 IQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEE 471 (617)
Q Consensus 417 IEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~ 471 (617)
|.-||...-+|.-||+.++.+++.+...+.++.+|+..|.-|+..||..|..++.
T Consensus 11 m~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee 65 (101)
T 3u1c_A 11 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLE 65 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888999999999999999999999999999999999999999886654
No 26
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=89.87 E-value=2.9 Score=34.77 Aligned_cols=66 Identities=24% Similarity=0.280 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHH
Q 007114 329 VIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAE 397 (617)
Q Consensus 329 ~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASae 397 (617)
-+..||....+|..|+.+++.+++.....+.++..++.. ++.|+..||..+-.++.+|..|..--+
T Consensus 7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~---L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVA---LQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888899999988888887777777766554 577899999999888888877765443
No 27
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=87.04 E-value=16 Score=32.55 Aligned_cols=110 Identities=21% Similarity=0.289 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHh
Q 007114 332 SLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVK 411 (617)
Q Consensus 332 ~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~Is 411 (617)
.+.+.+...+.+....+...+.|...+..|..+.+.|. .||+..........+....+...=.
T Consensus 17 ~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~-----------------~qL~~E~~~l~e~EE~~~~L~~~k~ 79 (129)
T 2fxo_A 17 SMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQ-----------------LQVQAEQDNLADAEERCDQLIKNKI 79 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444444444555555566666655555555544433 3344333333333333333444444
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHH
Q 007114 412 DMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEAS 465 (617)
Q Consensus 412 dMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~ 465 (617)
+||..|.++.+ |-+.-|..+..|+..--+|.+++.-|+..+.++|..
T Consensus 80 eLe~~l~el~~-------rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~~ 126 (129)
T 2fxo_A 80 QLEAKVKEMNK-------RLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELT 126 (129)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555544 444445566666766777777777777777766643
No 28
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=86.83 E-value=6.4 Score=40.47 Aligned_cols=74 Identities=28% Similarity=0.325 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh-hhHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 007114 325 VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA-TSEKVESLERQLRESDIQLQHAVAYAEA 398 (617)
Q Consensus 325 ~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~-lsEKv~sLEkQLkEse~QL~~A~ASaea 398 (617)
+..|+..-|.++|.+++....+++.+.---..|=+-|...|+-=++ ...|++.||.++++.+-+++++.|..+.
T Consensus 394 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 394 EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777788888888888888888777777777777776665444 4468899999999999988888876654
No 29
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=86.80 E-value=20 Score=33.82 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=19.3
Q ss_pred hHHHhHHHHHHHHHHHhhhhhhhHHHHhH
Q 007114 235 LEKKLTESRQVEEALKFRLGSFEQELLYT 263 (617)
Q Consensus 235 LEkkL~es~~~eeeLk~kL~~~eqe~~~l 263 (617)
|=.||..|-...-.|...|+.+.++....
T Consensus 4 LStKLI~Ain~qs~LeD~L~~~R~el~~~ 32 (154)
T 2ocy_A 4 LSTQLIESVDKQSHLEEQLNKSLKTIASQ 32 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 44567777777777777777777665443
No 30
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=85.28 E-value=10 Score=33.75 Aligned_cols=108 Identities=11% Similarity=0.165 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHh
Q 007114 330 IASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYST 409 (617)
Q Consensus 330 ~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~ 409 (617)
+++|+..+..-......+..++..|..+--.|..+|+.+++. -.+||.+|.+.+.+...+... +...
T Consensus 17 ~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~---~~~LE~~l~e~e~~~~~~l~~----------~q~~ 83 (129)
T 3tnu_B 17 YEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQ---CANLQNAIADAEQRGELALKD----------ARNK 83 (129)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----------HHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHH----------HHHH
Confidence 445555554444444555556555555555556666555543 456777777766654332222 2223
Q ss_pred HhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHh
Q 007114 410 VKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRD 457 (617)
Q Consensus 410 IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLks 457 (617)
|.++|.-+..+|.... .--.+...|-...+.|.-|++.||.
T Consensus 84 i~~lE~eL~~~r~e~~-------~ql~EYq~LlnvKl~Ld~EIatYRk 124 (129)
T 3tnu_B 84 LAELEEALQKAKQDMA-------RLLREYQELMNTKLALDVEIATYRK 124 (129)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444332 2234667788888889999999874
No 31
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=83.75 E-value=6.9 Score=32.89 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHH
Q 007114 312 LRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESL 378 (617)
Q Consensus 312 l~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sL 378 (617)
+-.||+.+|..=.+|+--+.+|+.++..+.++-.....+.+.+. -.|..+|.+|.+++..+..|
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~---e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL---EILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHh
Confidence 44566666655556666666666666666666666666666664 45999999999998888764
No 32
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=83.46 E-value=10 Score=33.84 Aligned_cols=108 Identities=18% Similarity=0.255 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHh
Q 007114 330 IASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYST 409 (617)
Q Consensus 330 ~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~ 409 (617)
+++|+..+..-......+..++..|..+--.|..+|+.+++. -.+||.+|.+.+.+...+... +...
T Consensus 19 ~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~---~~sLE~~l~e~e~~~~~~l~~----------~q~~ 85 (131)
T 3tnu_A 19 TEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSM---KASLENSLEETKGRYCMQLAQ----------IQEM 85 (131)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----------HHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHH----------HHHH
Confidence 444554444444444455555555555545555555555443 356777777766654433222 2223
Q ss_pred HhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHh
Q 007114 410 VKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRD 457 (617)
Q Consensus 410 IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLks 457 (617)
|.++|.-+..+|..... --.+...|-...+.|.-|++.||.
T Consensus 86 i~~lE~eL~~~r~em~~-------ql~EYq~Ll~vKl~Ld~EIatYRk 126 (131)
T 3tnu_A 86 IGSVEEQLAQLRCEMEQ-------QNQEYKILLDVKTRLEQEIATYRR 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555545444443322 234667788888889999999874
No 33
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=83.34 E-value=18 Score=39.10 Aligned_cols=92 Identities=14% Similarity=0.232 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHh
Q 007114 326 KESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNM 405 (617)
Q Consensus 326 len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~ 405 (617)
.+..+++||..+.+.+.+...++--.+.|... ++....++...+..++++...++.-.+...... ...
T Consensus 98 V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~s----------lk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~--~~~ 165 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNK----------LVKTQKQRKDNDIILSEYNTEMELHYNYIKDNL--DNN 165 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTH
T ss_pred hHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHH----------hhcccccccchhhHHHHHHHHHHHHHHHHHHHH--hcc
Confidence 44445555555555555544444444433221 222333444444455555544444333332211 111
Q ss_pred HHHhHhhhHHHHHHHHHhhhhhhh
Q 007114 406 LYSTVKDMENLIQDLKLKVSKADS 429 (617)
Q Consensus 406 l~S~IsdMEnvIEeLK~KvskAES 429 (617)
.-+.|+.++.+++.++.|+.+-|+
T Consensus 166 ~~~~i~~L~~~~~~l~~ki~~l~~ 189 (464)
T 1m1j_B 166 IPSSLRVLRAVIDSLHKKIQKLEN 189 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Confidence 234455555555555554444443
No 34
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.21 E-value=8.4 Score=34.02 Aligned_cols=44 Identities=18% Similarity=0.368 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhh
Q 007114 311 GLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSL 354 (617)
Q Consensus 311 el~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~L 354 (617)
.++..+..|+.++.+.+..+..|+..+.+...+-..||.++..+
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~i 52 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKL 52 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777778888888777777778777777666666666665544
No 35
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=81.74 E-value=5 Score=36.74 Aligned_cols=51 Identities=25% Similarity=0.285 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHh
Q 007114 312 LRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELN 362 (617)
Q Consensus 312 l~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~ 362 (617)
++.+...++.++++++..+.+||.++..+.-+..++..+...|.+-+-+|.
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566888999999999999999999998888888888777744443333
No 36
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=81.38 E-value=8.8 Score=31.82 Aligned_cols=55 Identities=31% Similarity=0.343 Sum_probs=36.9
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHH
Q 007114 417 IQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEE 471 (617)
Q Consensus 417 IEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~ 471 (617)
|.-||...-.|..|++.++.++......+.++.+|+..|.-|+..||..|..++.
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee 62 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSE 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666667777777777777777777777777777777777765543
No 37
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=81.27 E-value=16 Score=32.40 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=7.0
Q ss_pred HhhhHHHHHHHHHhhh
Q 007114 410 VKDMENLIQDLKLKVS 425 (617)
Q Consensus 410 IsdMEnvIEeLK~Kvs 425 (617)
+..|.-.++++|.|+-
T Consensus 43 ldn~~~~~edfk~KyE 58 (119)
T 3ol1_A 43 RDNLAEDIMRLREKLQ 58 (119)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhH
Confidence 4444444444444443
No 38
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=80.56 E-value=19 Score=39.92 Aligned_cols=136 Identities=9% Similarity=0.029 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHH
Q 007114 318 SLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAE 397 (617)
Q Consensus 318 slEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASae 397 (617)
.|-+|=+++.+.|++||.++.+-+..-..+++-.+.+ .+.|+.-....+..++-..++-..|+.-....+
T Consensus 54 lLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~----------~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLK 123 (562)
T 3ghg_A 54 LIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNI----------MEILRGDFSSANNRDNTYNRVSEDLRSRIEVLK 123 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH----------HHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred hHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHH----------HHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Confidence 4556666888888888888877644444444443333 334444333333444444444434443333222
Q ss_pred HHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHH
Q 007114 398 ASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAE 470 (617)
Q Consensus 398 a~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~ 470 (617)
++.+.-.+.|+-|+++|+++..|+.+.|.-.+..-.-|+.==..+++-.=++..| +.+|++|.|+.
T Consensus 124 ---ekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY----~~~QKQLeQv~ 189 (562)
T 3ghg_A 124 ---RKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDY----EDQQKQLEQVI 189 (562)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHH----HHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHH----HHHHHHHHHHh
Confidence 2222233779999999999999999999988888888887655555555555555 46788887665
No 39
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=78.01 E-value=17 Score=31.23 Aligned_cols=71 Identities=21% Similarity=0.247 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhh-HHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhH
Q 007114 371 TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDM-ENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLT 449 (617)
Q Consensus 371 lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdM-EnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLn 449 (617)
--+||..||.|=+..+.++..-..... +.+..| |..|.+|+..+..+ +-.|..|.
T Consensus 21 yIdKVR~LEqqN~~Le~~i~~l~~~~~----------~~~~~~ye~~i~~Lr~~i~~~--------------~~ek~~l~ 76 (93)
T 3s4r_A 21 LIDKVRFLEQQNKILLAELEQLKGQGK----------SRLGDLYEEEMRELRRQVDQL--------------TNDKARVE 76 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccC----------CCcHHHHHHHHHHHHHHHHHH--------------HHHHHHHH
Confidence 357899999998888877765543211 224443 67777777655443 33455555
Q ss_pred HHHHhhHhHHHHHHHH
Q 007114 450 EEISFLRDRLECLEAS 465 (617)
Q Consensus 450 eEL~fLksr~~~LE~~ 465 (617)
-|+..|..-+..+..+
T Consensus 77 ~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 77 VERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5555555555544443
No 40
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=77.43 E-value=27 Score=29.60 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhh
Q 007114 385 SDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKA 427 (617)
Q Consensus 385 se~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskA 427 (617)
...++.++...++..+.+++.-...=.++|+=|.-||-.|..|
T Consensus 19 l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a 61 (86)
T 3swk_A 19 VEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNA 61 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3344445555555555554444444445555555555544443
No 41
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=76.92 E-value=10 Score=32.25 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHH
Q 007114 313 RSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESL 378 (617)
Q Consensus 313 ~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sL 378 (617)
-.||+.+|..=.+|+--+..|..++..+.++-.....+.+.+ .-.|..+|.+|.+++..+..|
T Consensus 12 ~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l---~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 12 QQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRA---AQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHh
Confidence 344544444444555555555555555555555555666665 456999999999998888765
No 42
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=76.51 E-value=41 Score=30.29 Aligned_cols=73 Identities=15% Similarity=0.226 Sum_probs=39.5
Q ss_pred HHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 007114 441 LSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQ 520 (617)
Q Consensus 441 LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L~~k~k 520 (617)
+.+.+-+=..+++.|..++..=|..|..+..+ .+--..-+.+-+.+|+..|+++..++..|-.+|--|+-|+-
T Consensus 36 w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~-------fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk~~ 108 (112)
T 1x79_B 36 IKQSSEDSSHQISALVLRAQASEILLEELQQG-------LSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGKHS 108 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh
Confidence 66666666677777777777777766644432 22223445677889999999999999999999999988764
No 43
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=75.29 E-value=23 Score=29.96 Aligned_cols=37 Identities=14% Similarity=0.219 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHH
Q 007114 320 VKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAE 356 (617)
Q Consensus 320 EeqL~~len~~e~LKe~i~~AEsra~~aeskc~~Lte 356 (617)
++.+..++.-+..+|+.+.+.+..-..-+.++..|..
T Consensus 13 eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ 49 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLE 49 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666665555444444444444433
No 44
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=74.77 E-value=17 Score=31.13 Aligned_cols=57 Identities=23% Similarity=0.247 Sum_probs=46.0
Q ss_pred hHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHH
Q 007114 409 TVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEAS 465 (617)
Q Consensus 409 ~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~ 465 (617)
+|.-|.--|++||.+-.....-++.|-..-..|...|-.|.+|.+...+|+..|=.+
T Consensus 21 tI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 21 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445558999999888877777777888889999999999999999998877554
No 45
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=73.21 E-value=1.2e+02 Score=33.56 Aligned_cols=93 Identities=13% Similarity=0.110 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhh-hhhhHHHHHhhHHHhhhhhH
Q 007114 371 TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADS-RADSAEEKLIILSEANAGLT 449 (617)
Q Consensus 371 lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAES-RAe~AE~kc~~LtEtN~eLn 449 (617)
+..+-..|-....+-...|+.+.+....+..-...+......++.-|.+-...+....- ...+.|..... --.+-
T Consensus 576 L~~rw~~L~~~~~~R~~~L~~~l~~~~~~~~l~~~F~~~a~~~~~Wi~e~e~~l~~~~~~~~~~le~~l~~----~~~~~ 651 (863)
T 1sjj_A 576 INGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNH----LRQYE 651 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCTTTSSHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHH----HHHHH
Confidence 44555555555555555566655544444333344445566666666665555543211 12334443222 22366
Q ss_pred HHHHhhHhHHHHHHHHHH
Q 007114 450 EEISFLRDRLECLEASLH 467 (617)
Q Consensus 450 eEL~fLksr~~~LE~~L~ 467 (617)
.+|...+..+..++.--.
T Consensus 652 ~el~~~~~~i~~l~~l~~ 669 (863)
T 1sjj_A 652 KSIVNYKPKIDQLEGDHQ 669 (863)
T ss_dssp HHHHTTGGGHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHH
Confidence 677777776666654333
No 46
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=69.94 E-value=13 Score=36.31 Aligned_cols=58 Identities=22% Similarity=0.357 Sum_probs=33.8
Q ss_pred HHhhhhhhhHhhhhhHHhhHHHhhhhhh----hhhhhHHHHHHHHHHHHhHHHHHHHHHhHH
Q 007114 340 AQARADGAEVRCKSLAETNIELNEDLKG----SRATSEKVESLERQLRESDIQLQHAVAYAE 397 (617)
Q Consensus 340 AEsra~~aeskc~~LteTN~eL~~el~~----Lk~lsEKv~sLEkQLkEse~QL~~A~ASae 397 (617)
+++|..+|..-+..|+.-|--|+.+++. ++.|.+++.+|+.+.+.++.++..+...++
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~ 72 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSE 72 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhh
Confidence 4556666666666666666655555554 666899999999999988887754443333
No 47
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=69.44 E-value=13 Score=33.47 Aligned_cols=70 Identities=20% Similarity=0.195 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHh
Q 007114 371 TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEA 444 (617)
Q Consensus 371 lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEt 444 (617)
+..+|..||.+|-+..-+.+.|....+-...+...+ ...-.--..+..++-.+|.||..+|.+...|=+.
T Consensus 45 l~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l----~~~~~~~~~~q~~~~e~E~kAqa~Eerf~KLKe~ 114 (120)
T 3i00_A 45 LKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL----RRQREDTEKAQRSLSEIERKAQANEQRYSKLKEK 114 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTCC-----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777776666666655555444332222 2222223445667888999999999888776543
No 48
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=66.25 E-value=59 Score=27.45 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=22.5
Q ss_pred hhHHHHHhhHHHhhhhhHHHHHhhHhHHH
Q 007114 432 DSAEEKLIILSEANAGLTEEISFLRDRLE 460 (617)
Q Consensus 432 e~AE~kc~~LtEtN~eLneEL~fLksr~~ 460 (617)
..||.+|..|.....+|...|.-+..|++
T Consensus 59 ~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 59 KQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44567888888888888888888877764
No 49
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=63.95 E-value=70 Score=32.77 Aligned_cols=58 Identities=16% Similarity=0.243 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHh
Q 007114 372 SEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLI 439 (617)
Q Consensus 372 sEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~ 439 (617)
++....|.+||-+++.-+..+.+-+-+.. .+.-.+-+.|-.|++.++.|.+.-|.+.+
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (471)
T 3mq9_A 396 RNVTHLLQQELTEAQKGFQDVEAQAATAN----------HTVMALMASLDAEKAQGQKKVEELEGEIT 453 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHhhhcc----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777666666655554433 12233445566666666655554444443
No 50
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=63.71 E-value=26 Score=32.06 Aligned_cols=58 Identities=22% Similarity=0.270 Sum_probs=34.1
Q ss_pred HHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHH
Q 007114 403 QNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLH 467 (617)
Q Consensus 403 qn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~ 467 (617)
...+...+.+++.-|.+||..+..+.-+.+ .+...+.+|.+++..|..+...||+.|.
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e-------~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAE-------SSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666667788887777765444 4444455555566666666566665553
No 51
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=62.10 E-value=69 Score=28.36 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=15.7
Q ss_pred hhhHHHHHhhHhHHHHHHHHHHHHHHHh
Q 007114 446 AGLTEEISFLRDRLECLEASLHQAEETK 473 (617)
Q Consensus 446 ~eLneEL~fLksr~~~LE~~L~qa~~~K 473 (617)
-.|.-||..+++.-.+||..|..++..=
T Consensus 46 q~L~~el~~l~~~~~~LE~~l~e~e~~~ 73 (129)
T 3tnu_B 46 QRLRAEIDNVKKQCANLQNAIADAEQRG 73 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3455556666666666666665555433
No 52
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=61.11 E-value=1.4e+02 Score=29.83 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=43.1
Q ss_pred HHhhhhhhhHHHhHHHHHHHHHHHHhhhhhhhccccccchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 007114 104 DLLSGLLDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTL 180 (617)
Q Consensus 104 DlL~gilDSEv~Ele~~~~tlq~~I~~~~~~i~s~~~~g~~f~~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~ 180 (617)
.+|++|||.=|.....+++.|..+|...+..+..... +....++..+|++...|.|.+
T Consensus 156 ~ll~~lld~ivd~~~~~l~~l~~~i~~lE~~l~~~~~-------------------~~~l~~l~~lrr~l~~lrr~l 213 (339)
T 4ev6_A 156 FLLYHILNEITRSYSRILMNLEDELEELEDKLLAGYD-------------------REVMEKILGLRKTLVYFHKSL 213 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCC-------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------------------hhHHHHHHHHHHHHHHHHHHh
Confidence 4889999999999999999999999888887764332 123345666777777777766
No 53
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=60.97 E-value=20 Score=28.12 Aligned_cols=36 Identities=33% Similarity=0.398 Sum_probs=30.2
Q ss_pred hhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHH
Q 007114 431 ADSAEEKLIILSEANAGLTEEISFLRDRLECLEASL 466 (617)
Q Consensus 431 Ae~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L 466 (617)
.+..|.++..|+..|..|..++..|+..+..|...|
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566677888999999999999999999888877655
No 54
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=58.67 E-value=1.1e+02 Score=28.98 Aligned_cols=59 Identities=10% Similarity=0.166 Sum_probs=42.5
Q ss_pred HHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 007114 435 EEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQ 503 (617)
Q Consensus 435 E~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~ 503 (617)
+..+..=+..+-.|+.|+..|.-.++.+|.++..++.+- .++|.-++.+-+.|-++++.
T Consensus 88 eeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN----------~~LV~RWM~rk~qEAe~MN~ 146 (152)
T 3a7p_A 88 KEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEH----------SQLVARWLKKTEKETEAMNS 146 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 346666667788899999999999999999998666543 34666677777777666653
No 55
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=57.64 E-value=82 Score=26.21 Aligned_cols=69 Identities=26% Similarity=0.309 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHH
Q 007114 372 SEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEE 451 (617)
Q Consensus 372 sEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneE 451 (617)
.-...+||.+|.+.+.+...+... ....|.++|.-+..+|..... --.+...|-...+.|.-|
T Consensus 7 ~~~~~sLE~~l~e~e~~~~~~~~~----------~q~~i~~lE~eL~~~r~e~~~-------q~~EYq~LlnvK~~Ld~E 69 (84)
T 1gk4_A 7 KGTNESLERQMREMEENFAVEAAN----------YQDTIGRLQDEIQNMKEEMAR-------HLREYQDLLNVKMALDIE 69 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhHHH
Confidence 335567788888777765443222 222355555555555443322 234677788888899999
Q ss_pred HHhhHh
Q 007114 452 ISFLRD 457 (617)
Q Consensus 452 L~fLks 457 (617)
++.||.
T Consensus 70 IatYRk 75 (84)
T 1gk4_A 70 IATYRK 75 (84)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999985
No 56
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A {Helicobacter pylori} PDB: 4g0h_A
Probab=56.39 E-value=1.5e+02 Score=33.60 Aligned_cols=100 Identities=22% Similarity=0.212 Sum_probs=49.1
Q ss_pred HHHHHhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHH-------------HHHHhhcchHHHHhhhHHH
Q 007114 224 MLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDAC-------------ERLFEAENSAEVLKGISKE 290 (617)
Q Consensus 224 MLEkSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~-------------er~~EAENa~EvL~g~ske 290 (617)
=|||||-..--||| |..-||.+-..-+-.||.-|..-+ .|-+.|--..+-|.||-.+
T Consensus 618 dlekslrkrehlek----------ev~kkles~~~nkn~meakaqansqkd~ifalin~ea~kear~~a~~~nlkGI~~E 687 (876)
T 4dvy_P 618 DLEKSLRKREHLEK----------EVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAYTQNLKGIKRE 687 (876)
T ss_dssp HHHHHHHHHHHHHH----------HHHHHHHHCC---CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----------HHHHHHhhccCchhhhhHhhhhccccchHHHHhhhhhhhHHHHHHhccchhhhhHH
Confidence 35666655555554 444444444444445554433322 2222223345678888888
Q ss_pred HHHhHHHHhhhcccchhchhhHHHH-HH---HHHHHHHHHHHHHHHH
Q 007114 291 LLGRLQIVLFNMNGSVQREAGLRSK-LD---SLVKQVEVKESVIASL 333 (617)
Q Consensus 291 l~gkLq~~qf~L~as~~REsel~sK-Lk---slEeqL~~len~~e~L 333 (617)
+.+||+.+-.+|+-.+..=.+++.= -+ -.++-|++|++.+.+|
T Consensus 688 lsdKlENiNknLkDf~ksfde~KNGKNkDFSKv~etlk~L~~SvKDl 734 (876)
T 4dvy_P 688 LSDKLEKISKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDL 734 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC----------CCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhcccchhhhCCCcccHHHHHHHHHHHHhHHHHh
Confidence 8888888887775544433333211 01 2344455555555543
No 57
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=55.35 E-value=1.3e+02 Score=31.02 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=8.5
Q ss_pred hHhhhHHHHHHHHHhhhhh
Q 007114 409 TVKDMENLIQDLKLKVSKA 427 (617)
Q Consensus 409 ~IsdMEnvIEeLK~KvskA 427 (617)
.++.+|++..++....-++
T Consensus 415 ~~~~~~~~~~~~~~~~~~~ 433 (487)
T 3oja_A 415 IVKRYEEMYVEQQSVQNNA 433 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 3444455544444433333
No 58
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=54.28 E-value=83 Score=28.40 Aligned_cols=65 Identities=23% Similarity=0.264 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHH
Q 007114 310 AGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQL 389 (617)
Q Consensus 310 sel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL 389 (617)
.+|..+|.++|+.|..+...+.+||+.+.+- +...|.+.-|+-|..-|..--
T Consensus 27 ~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~----------------------------~~~lE~I~vLkaQv~IY~~DF 78 (110)
T 2v4h_A 27 EDLRQQLQQAEEALVAKQELIDKLKEEAEQH----------------------------KIVMETVPVLKAQADIYKADF 78 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999998866541 111356778888888887776
Q ss_pred HHHHHhHHHHHHH
Q 007114 390 QHAVAYAEASLEK 402 (617)
Q Consensus 390 ~~A~ASaea~~ee 402 (617)
..-.+.-+-.+.+
T Consensus 79 ~aERadREkl~~e 91 (110)
T 2v4h_A 79 QAERHAREKLVEK 91 (110)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchhhHHHHHhH
Confidence 6666665554444
No 59
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=53.53 E-value=93 Score=27.65 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=12.1
Q ss_pred hhHHHHHhhHhHHHHHHHHHHHHHH
Q 007114 447 GLTEEISFLRDRLECLEASLHQAEE 471 (617)
Q Consensus 447 eLneEL~fLksr~~~LE~~L~qa~~ 471 (617)
.|.-||..+++.-.+||..|..++.
T Consensus 49 ~L~~el~~l~~~~~sLE~~l~e~e~ 73 (131)
T 3tnu_A 49 NLEIELQSQLSMKASLENSLEETKG 73 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444445555555555555544444
No 60
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=53.40 E-value=79 Score=27.06 Aligned_cols=67 Identities=18% Similarity=0.251 Sum_probs=34.4
Q ss_pred hhhhhHHhhHHHhhhhhhhhh-hhHHHHHH-HHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHh
Q 007114 350 RCKSLAETNIELNEDLKGSRA-TSEKVESL-ERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLK 423 (617)
Q Consensus 350 kc~~LteTN~eL~~el~~Lk~-lsEKv~sL-EkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~K 423 (617)
|+..|+..|-.|..++..+++ ..-.+..+ |..|.+...|+..+. .+-..+..++..|...++++|.|
T Consensus 24 KVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~-------~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 24 KVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLT-------NDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 455566666666666666654 11122222 444444333333332 23333455677777777777765
No 61
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=51.69 E-value=1e+02 Score=25.95 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=57.7
Q ss_pred HHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 007114 437 KLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVM 515 (617)
Q Consensus 437 kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L 515 (617)
+...++-.|..|.-|+..++.-+.++-.+...--..+.+.-.||..-+|.+-++. .-|--|..||.||.+|=..|
T Consensus 8 qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~----l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 8 QVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNAS----LARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 4445677888899999999999999988888777777777788888777766654 45666888899988775443
No 62
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=51.63 E-value=98 Score=29.20 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=40.8
Q ss_pred HHHhhhhhhhHHHhHHHHHHHHHHHHhhhhhhhccccccchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 007114 103 FDLLSGLLDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTL 180 (617)
Q Consensus 103 FDlL~gilDSEv~Ele~~~~tlq~~I~~~~~~i~s~~~~g~~f~~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~ 180 (617)
.++|+.|||.=|...-.+++.|..+|...+..+... . . ....++..+|++...|.|.+
T Consensus 146 ~~ll~~lld~ivd~y~~~l~~l~~~id~lE~~l~~~-~-~------------------~~l~~l~~lrr~l~~lrr~l 203 (264)
T 3nvo_A 146 GGWLVDVCDALTDHASEFIEELHDKIIDLEDNLLDQ-Q-I------------------PPRGFLALLRKQLIVMRRYM 203 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----C-C------------------CCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C-c------------------hhHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999888876543 1 1 11345566777777777766
No 63
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=50.90 E-value=1.8e+02 Score=28.02 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=44.5
Q ss_pred HHhhhhhhhHHHhHHHHHHHHHHHHhhhhhhhccccccchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 007114 104 DLLSGLLDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTL 180 (617)
Q Consensus 104 DlL~gilDSEv~Ele~~~~tlq~~I~~~~~~i~s~~~~g~~f~~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~ 180 (617)
.+|++|||.=|...-.+++.|..+|...+..+.+-.. +....++..+|++...|.|++
T Consensus 156 ~ll~~lld~ivd~y~~~l~~i~~~id~lE~~l~~~~~-------------------~~~l~~i~~lrr~l~~lrr~l 213 (280)
T 4egw_A 156 FLLYHILNEITRSYSRILMNLEDELEELEDKLLAGYD-------------------REVMEKILGLRKTLVYFHKSL 213 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC-------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-------------------hhHHHHHHHHHHHHHHHHHHH
Confidence 3889999999998888999999998888877664322 123456777888888888877
No 64
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=50.24 E-value=44 Score=26.53 Aligned_cols=37 Identities=27% Similarity=0.258 Sum_probs=30.0
Q ss_pred hhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHH
Q 007114 431 ADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLH 467 (617)
Q Consensus 431 Ae~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~ 467 (617)
.+.-+.++..|+..|..|..+++.|+..+..|..-|.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666778889999999999999999888877776553
No 65
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=50.20 E-value=2.4e+02 Score=30.17 Aligned_cols=107 Identities=13% Similarity=0.119 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh----hhHHHHHHHHHHHHhHHHHHHHH
Q 007114 318 SLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA----TSEKVESLERQLRESDIQLQHAV 393 (617)
Q Consensus 318 slEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~----lsEKv~sLEkQLkEse~QL~~A~ 393 (617)
.|.+|=+++.+.|++|+..+..-.....++..-...+.+. |++.+...++ .++-...||+|+...+.....-.
T Consensus 57 ~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~---lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~ 133 (390)
T 1deq_A 57 LIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVEL---MRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQV 133 (390)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444446778888888887776555444444444444222 2222222222 22233345555444433222211
Q ss_pred HhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhH
Q 007114 394 AYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIIL 441 (617)
Q Consensus 394 ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~L 441 (617)
-.|+-|.++|+++..|+.+.|...+..-.=|+.=
T Consensus 134 --------------~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~s 167 (390)
T 1deq_A 134 --------------QRINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGS 167 (390)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 1478888888888888888888776666666643
No 66
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=49.95 E-value=11 Score=34.94 Aligned_cols=39 Identities=15% Similarity=0.331 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhh
Q 007114 314 SKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCK 352 (617)
Q Consensus 314 sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~ 352 (617)
.+++.+...|...+..+..|...+.+...+-..||+++.
T Consensus 32 ~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~ 70 (135)
T 2e7s_A 32 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEAD 70 (135)
T ss_dssp HHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344454445555555566666655544444444444443
No 67
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=48.89 E-value=1.2e+02 Score=32.96 Aligned_cols=34 Identities=12% Similarity=0.079 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhh
Q 007114 321 KQVEVKESVIASLRENLSEAQARADGAEVRCKSL 354 (617)
Q Consensus 321 eqL~~len~~e~LKe~i~~AEsra~~aeskc~~L 354 (617)
+|-......+.+|+..+.+.+.++..|+..++.|
T Consensus 88 kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~i 121 (461)
T 3ghg_B 88 QQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLL 121 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred hcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3444555666666666777777776666666555
No 68
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=48.63 E-value=2.3e+02 Score=28.59 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=30.4
Q ss_pred HHhhhhhhhHHHhHHHHHHHHHHHHhhhhhhhccc
Q 007114 104 DLLSGLLDSELRELENFITTLEADFVKAHELISSY 138 (617)
Q Consensus 104 DlL~gilDSEv~Ele~~~~tlq~~I~~~~~~i~s~ 138 (617)
.+|+.|||.=|...-.+++.|..+|.+.+..+...
T Consensus 180 ~ll~~lld~ivd~y~~~l~~l~~~id~lE~~v~~~ 214 (363)
T 2iub_A 180 YLLYSLIDALVDDYFVLLEKIDDEIDVLEEEVLER 214 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 37899999999999999999999999998887654
No 69
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=48.29 E-value=1.6e+02 Score=26.90 Aligned_cols=78 Identities=27% Similarity=0.297 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh-hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 007114 325 VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA-TSEKVESLERQLRESDIQLQHAVAYAEASLEK 402 (617)
Q Consensus 325 ~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~-lsEKv~sLEkQLkEse~QL~~A~ASaea~~ee 402 (617)
+-.|+..=|..++.+|..-...+|+.-.--..|=+-|+.-|...+. ...+|+.|+..++..+-+|+.|.|.++....+
T Consensus 22 ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 22 EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456666677777777777777774444444455556666666655 56678889999999998999888887765444
No 70
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=47.38 E-value=79 Score=27.24 Aligned_cols=55 Identities=31% Similarity=0.341 Sum_probs=35.8
Q ss_pred hhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHH---HHHHHHHHhhhhh
Q 007114 447 GLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMA---VERERLRQQISSL 508 (617)
Q Consensus 447 eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa---~ErErL~~Qissl 508 (617)
.|-+|++-||-||+.||+.=.|-+ +-+-..+.-|.-|-.||+ .|.+|||.|+++-
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyE-------kKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~~~ 80 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYE-------WKLKATKAEVAQLQEQVALKDAEIERLHSQLSRT 80 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 588999999999999887654433 223222333444444554 5889999998753
No 71
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=46.59 E-value=73 Score=31.09 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=25.5
Q ss_pred hhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHH
Q 007114 426 KADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQA 469 (617)
Q Consensus 426 kAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa 469 (617)
.++.|.++|..-...|...|--|+++|....++...|.++|..+
T Consensus 10 ~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl 53 (190)
T 4emc_A 10 SVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSL 53 (190)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777877888888888888888877777777777766543
No 72
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=45.95 E-value=1.5e+02 Score=33.08 Aligned_cols=46 Identities=13% Similarity=0.197 Sum_probs=30.5
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhh
Q 007114 307 QREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCK 352 (617)
Q Consensus 307 ~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~ 352 (617)
+|=..|+.|+.+-=.+++.|++.|+++..+|.+-|.-....---|+
T Consensus 117 RrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCK 162 (562)
T 3ghg_A 117 SRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCR 162 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3334455555543377778888888888888877776666555554
No 73
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=45.30 E-value=1.2e+02 Score=30.57 Aligned_cols=106 Identities=16% Similarity=0.196 Sum_probs=69.3
Q ss_pred hhhhhhHHHHHHhhhcccccccccccccCCchhHHHHHHHHHHhhhhhhhHHHhHHHHHHHHHHHHhhhhhhhccccccc
Q 007114 63 KLVNLNILTMHVATRESEFEAFAKKREHILDDDSVETALAFDLLSGLLDSELRELENFITTLEADFVKAHELISSYTELG 142 (617)
Q Consensus 63 Kl~NL~~l~M~l~~~~~~~E~~~~~~~~i~~~~s~ekaleFDlL~gilDSEv~Ele~~~~tlq~~I~~~~~~i~s~~~~g 142 (617)
|..=||.++..+.....++-.+..+ + .+|++|-..|+ .-|.+++..|.+=+..++.++.... ...+.+
T Consensus 176 k~TLLh~lv~~~~~~~p~l~~f~~e---L---~~v~~Askvs~--~~l~~~l~~l~~~~~~~~~~l~~~~----~~~~~~ 243 (340)
T 1v9d_A 176 KMTLLHFLAELCENDHPEVLKFPDE---L---AHVEKASRVSA--ENLQKSLDQMKKQIADVERDVQNFP----AATDEK 243 (340)
T ss_dssp TSBHHHHHHHHHHHSCCTTSSGGGG---C---TTHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHHTCC----CCSSSS
T ss_pred CccHHHHHHHHHHHhCchhccchhH---H---HhHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHhcc----cccchh
Confidence 4444677777777666666655544 2 34566655443 3355777787777777777765432 112334
Q ss_pred hhhH-HHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 007114 143 KASI-EMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSAL 183 (617)
Q Consensus 143 ~~f~-~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~ 183 (617)
..|. .|..-+.+++..+.+++.+...+.. .|..+..+|
T Consensus 244 d~f~~~m~~Fl~~a~~~~~~l~~~~~~~~~---~~~~l~~yf 282 (340)
T 1v9d_A 244 DKFVEKMTSFVKDAQEQYNKLRMMHSNMET---LYKELGDYF 282 (340)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 5675 5899999999999999888877764 566777666
No 74
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=45.13 E-value=85 Score=24.03 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhh
Q 007114 314 SKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKG 367 (617)
Q Consensus 314 sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~ 367 (617)
....+++..+..+...+..++..+..+-.+..++...+....+.-.+++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~~ 58 (60)
T 3htk_A 5 NTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNEY 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445577777777777777788888888888888877777776666666555543
No 75
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=44.49 E-value=3.2e+02 Score=29.11 Aligned_cols=228 Identities=14% Similarity=0.092 Sum_probs=121.3
Q ss_pred hhhcccccccccccccCCchhHHHHHHHHHHhhhhhhhHHHhHHHHHHHHHHHHhhhhhhhccccccchhhHHHHHhhhh
Q 007114 75 ATRESEFEAFAKKREHILDDDSVETALAFDLLSGLLDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLD 154 (617)
Q Consensus 75 ~~~~~~~E~~~~~~~~i~~~~s~ekaleFDlL~gilDSEv~Ele~~~~tlq~~I~~~~~~i~s~~~~g~~f~~~~~KL~~ 154 (617)
..|=.+.++.....++=.+-.+|+.-+. =+.+|.++|.....=|+.|.... ++ ..++..
T Consensus 15 ~~Wl~E~~~~L~S~d~GkDL~sVe~LLq---KH~~lE~eI~a~~~~v~~l~~~a---~~---------------~~~~~~ 73 (450)
T 3r6n_A 15 LGWMRQQRAEMDMVAWGVDLASVEQHIN---SHRGIHNSIGDYRWQLDKIKADL---RE---------------KSAIYQ 73 (450)
T ss_dssp HHHHHHHHHHTTSCCCCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHC---CC---------------HHHHHH
T ss_pred HHHHHHHHHhcCccccCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhh---cC---------------cHHHHH
Confidence 3444455554444333222344554333 15667777776666666665542 11 123444
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccCCCCCCCCCCCcccc---cccchhhhhhhccHHHHHHHHHHHHHHhhh
Q 007114 155 SEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNWISDKDTGSLEDD---QFLNENAKIKLQTAEQQRHFLRMLEKSLAR 231 (617)
Q Consensus 155 ~~~sLkQ~~e~i~eik~qsa~fqr~~~~~~~~~~~~~~~~~~~~ed~---~~~~~~~~~~mqt~eQqR~iLrMLEkSlA~ 231 (617)
.........+....=|.++..+.+.+.....+..|-.++.......+ -..++.+. |++| +-|+..|..
T Consensus 74 L~~~y~~L~~~a~~Rr~~Le~L~qFl~d~~ee~~Wi~EKe~~~~s~d~gd~l~dv~~l-------~~kh--q~l~~EL~~ 144 (450)
T 3r6n_A 74 LEEEYENLLKASFERMDHLRQLQNIIQATSREIMWINDCEEEELLYDWSDKNTNIAQK-------QEAF--SIRMSQLEV 144 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSTTCCCTTHH-------HHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcChhhHHHH-------HHHH--HHHHHHHHH
Confidence 55555555555555566666777888777777778776542221111 11223222 2333 333333332
Q ss_pred hhhhHHHhHHHHHHHHH-----------HHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhh
Q 007114 232 EMDLEKKLTESRQVEEA-----------LKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLF 300 (617)
Q Consensus 232 e~dLEkkL~es~~~eee-----------Lk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf 300 (617)
-|..+.......+. ++.++..+...-..|.+.+..--.++-+|..+- -+..+.+++-.-|...+-
T Consensus 145 ---~e~~i~~v~~~G~~Li~~~Hpas~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~~~-QF~~Da~EaesWL~eke~ 220 (450)
T 3r6n_A 145 ---KEKELNKLKQESDQLVLNQHPASDKIEAYMDTLQTQWSWILQITKCIDVHLKENAAYF-QFFEEAQSTEAYLKGLQD 220 (450)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred ---chHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHH
Confidence 23444444444444 444444444444555555555545555555554 355667777777765555
Q ss_pred hcccc-----hhchh---hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007114 301 NMNGS-----VQREA---GLRSKLDSLVKQVEVKESVIASLREN 336 (617)
Q Consensus 301 ~L~as-----~~REs---el~sKLkslEeqL~~len~~e~LKe~ 336 (617)
.|..- |..++ .|.-|++.+|+.|...++.|..|.+.
T Consensus 221 ~l~s~y~~D~g~d~~~~e~LLkkh~~le~~l~~~~~~I~~L~~q 264 (450)
T 3r6n_A 221 SIRKKYPCDKNMPLQHLLEQIKELEKEREKILEYKRQVQNLVNK 264 (450)
T ss_dssp HHHHHSCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55332 33443 46778888888888888888888654
No 76
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=42.76 E-value=1.9e+02 Score=25.97 Aligned_cols=94 Identities=19% Similarity=0.193 Sum_probs=61.8
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh----hhHHHHHHHHHH
Q 007114 307 QREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA----TSEKVESLERQL 382 (617)
Q Consensus 307 ~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~----lsEKv~sLEkQL 382 (617)
+|+.+|++|... +...++++|.+...+.+-+.. +-..|+.++..|+. +..++..||..-
T Consensus 3 k~~rdL~~~~~~-------L~~E~e~~k~K~~~~~~e~~~----------~~~~Lq~El~~lr~~~~~l~~~iReLEq~N 65 (111)
T 2v66_B 3 QRNRDLQADNQR-------LKYEVEALKEKLEHQYAQSYK----------QVSVLEDDLSQTRAIKEQLHKYVRELEQAN 65 (111)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466666666643 445566666666554433222 23345666666666 666888888888
Q ss_pred HHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHH
Q 007114 383 RESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLI 417 (617)
Q Consensus 383 kEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvI 417 (617)
-+++-+..++.+|.+-...++|...-..-=||+=+
T Consensus 66 DDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El 100 (111)
T 2v66_B 66 DDLERAKRATIVSLEDFEQRLNQAIERNAFLESEL 100 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888777777666555555433
No 77
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=42.57 E-value=1.1e+02 Score=31.59 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=68.6
Q ss_pred hhHHHHHHhhhcccccccccccccCCchhHHHHHHHHHHhhhhhhhHHHhHHHHHHHHHHHHhhhhhhhccc--cccchh
Q 007114 67 LNILTMHVATRESEFEAFAKKREHILDDDSVETALAFDLLSGLLDSELRELENFITTLEADFVKAHELISSY--TELGKA 144 (617)
Q Consensus 67 L~~l~M~l~~~~~~~E~~~~~~~~i~~~~s~ekaleFDlL~gilDSEv~Ele~~~~tlq~~I~~~~~~i~s~--~~~g~~ 144 (617)
||.++..+.....++..+..+ + .+|++|-..|+ .-|.++|++|..=+..++.++.... ++.+ .|.+..
T Consensus 261 Lh~l~~~v~~~~p~l~~f~~e---L---~~v~~Aakv~~--~~l~~d~~~L~~~l~~v~~~l~~~~--~s~~~~~~~~d~ 330 (411)
T 1ux5_A 261 LNYVEKIVRLNYPSFNDFLSE---L---EPVLDVVKVSI--EQLVNDCKDFSQSIVNVERSVEIGN--LSDSSKFHPLDK 330 (411)
T ss_dssp HHHHHHHHHHHCGGGGGHHHH---T---HHHHHHTTCCH--HHHHHHHHHHHHHHHHHHHHHHHST--TTCTTSSCTTCC
T ss_pred HHHHHHHHHHhCcccccccch---h---hhHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHhcc--CCcccccCcccH
Confidence 677777776666666555443 2 45666644332 3356788999888888888875422 2222 133455
Q ss_pred hHH-HHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 007114 145 SIE-MEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSAL 183 (617)
Q Consensus 145 f~~-~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~ 183 (617)
|.. |..-+.+++..+...++++..+.. .|.++..+|
T Consensus 331 f~~~~~~fl~~a~~~~~~l~~~~~~~~~---~~~~l~~yf 367 (411)
T 1ux5_A 331 VLIKTLPVLPEARKKGDLLEDEVKLTIM---EFESLMHTY 367 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 654 888899999998888888877765 577777666
No 78
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=42.08 E-value=79 Score=26.56 Aligned_cols=67 Identities=16% Similarity=0.220 Sum_probs=39.7
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhh
Q 007114 376 ESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFL 455 (617)
Q Consensus 376 ~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fL 455 (617)
.+||.+|.+.+.+..... ..+...|.++|.-+..+|..... --.+...|-...+.|.-|++.|
T Consensus 13 ~~Le~~l~e~E~~~~~~l----------~~~q~~i~~lE~el~~~r~e~~~-------ql~EYq~LlnvK~~Le~EIatY 75 (86)
T 1x8y_A 13 AAKEAKLRDLEDSLARER----------DTSRRLLAEKEREMAEMRARMQQ-------QLDEYQELLDIKLALDMEIHAY 75 (86)
T ss_dssp TTHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhHHHHHHH
Confidence 367777777776543322 12223355555555555443322 2346677888888899999999
Q ss_pred HhHH
Q 007114 456 RDRL 459 (617)
Q Consensus 456 ksr~ 459 (617)
|.=+
T Consensus 76 RkLL 79 (86)
T 1x8y_A 76 RKLL 79 (86)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8533
No 79
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=41.24 E-value=1.3e+02 Score=25.78 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhh
Q 007114 325 VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSR 369 (617)
Q Consensus 325 ~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk 369 (617)
-|+-.|++||++-.......+.+.+.-..|...|-+|+.+....+
T Consensus 24 lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq 68 (81)
T 2jee_A 24 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 444456666666666555556666666666666666666655443
No 80
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=40.65 E-value=1.4e+02 Score=25.01 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=7.6
Q ss_pred HHHHHHHhHHHHHHHHHhH
Q 007114 378 LERQLRESDIQLQHAVAYA 396 (617)
Q Consensus 378 LEkQLkEse~QL~~A~ASa 396 (617)
||++++.++.++.++....
T Consensus 19 Le~~v~~le~~Le~s~~~q 37 (72)
T 3cve_A 19 LEGQLSEMEQRLEKSQSEQ 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333
No 81
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=40.58 E-value=2e+02 Score=25.75 Aligned_cols=96 Identities=24% Similarity=0.234 Sum_probs=47.6
Q ss_pred hhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHH----HHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHH
Q 007114 347 AEVRCKSLAETNIELNEDLKGSRATSEKVESLE----RQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKL 422 (617)
Q Consensus 347 aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLE----kQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~ 422 (617)
||.++..|...|..|.-+++.+|. |....- .++...+-.+......-+.. .-.|++||--..||--
T Consensus 1 ~Ek~~rdL~~~~~~L~~E~e~~k~---K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l-------~~~iReLEq~NDDLER 70 (111)
T 2v66_B 1 AEQRNRDLQADNQRLKYEVEALKE---KLEHQYAQSYKQVSVLEDDLSQTRAIKEQL-------HKYVRELEQANDDLER 70 (111)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhchHHHH
Confidence 466777888888888888888776 222111 11222222233333333333 3347777777777755
Q ss_pred hhhhhhhhhhhHHHHHhhHHHhhhhhHHHH
Q 007114 423 KVSKADSRADSAEEKLIILSEANAGLTEEI 452 (617)
Q Consensus 423 KvskAESRAe~AE~kc~~LtEtN~eLneEL 452 (617)
.--.+-+=.+--|.|.-.-=|-|+=|-.||
T Consensus 71 ~~R~t~~SLeD~E~k~n~aiErnalLE~El 100 (111)
T 2v66_B 71 AKRATIVSLEDFEQRLNQAIERNAFLESEL 100 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 433333333333333333333444333333
No 82
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=38.82 E-value=2e+02 Score=25.28 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhh
Q 007114 372 SEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKV 424 (617)
Q Consensus 372 sEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~Kv 424 (617)
+.++..+-..=.....++.++...++..+.+++.-...-..+|+-|..||-.+
T Consensus 26 R~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~l 78 (119)
T 3ol1_A 26 RRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDV 78 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcc
Confidence 33344444333444445555555555555555544444445555555555433
No 83
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=38.55 E-value=2.7e+02 Score=29.75 Aligned_cols=34 Identities=12% Similarity=0.156 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhH
Q 007114 322 QVEVKESVIASLRENLSEAQARADGAEVRCKSLA 355 (617)
Q Consensus 322 qL~~len~~e~LKe~i~~AEsra~~aeskc~~Lt 355 (617)
|-+.....+++|+..+.+.+.++..|+..++.|.
T Consensus 32 ye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik 65 (411)
T 3ghg_C 32 YQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQ 65 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3345555666666666666666666666666653
No 84
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=38.32 E-value=2.3e+02 Score=25.63 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhhhhhhhHhh
Q 007114 330 IASLRENLSEAQARADGAEVRC 351 (617)
Q Consensus 330 ~e~LKe~i~~AEsra~~aeskc 351 (617)
+..|+.++..||.-.......|
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~i 47 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELI 47 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443333333
No 85
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=37.78 E-value=20 Score=28.30 Aligned_cols=36 Identities=25% Similarity=0.377 Sum_probs=24.8
Q ss_pred hhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHH
Q 007114 431 ADSAEEKLIILSEANAGLTEEISFLRDRLECLEASL 466 (617)
Q Consensus 431 Ae~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L 466 (617)
.+..|.++..|+..|.+|..+++.|+..+..|...|
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777888888888888888887776665444
No 86
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=37.70 E-value=2.1e+02 Score=25.16 Aligned_cols=64 Identities=23% Similarity=0.268 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHH
Q 007114 311 GLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQ 390 (617)
Q Consensus 311 el~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~ 390 (617)
+|..+|.++|+-|..++..|..||+.+.+- +...+.+.-|..|+.-|..--+
T Consensus 6 ~L~~~L~~aEeaL~~kq~~id~lke~~~q~----------------------------~~~~E~i~vLk~Qv~IY~~DF~ 57 (94)
T 3jsv_C 6 DLRQQLQQAEEALVAKQELIDKLKEEAEQH----------------------------KIVMETVPVLKAQADIYKADFQ 57 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888888888887755432 2234678888888888887777
Q ss_pred HHHHhHHHHHHH
Q 007114 391 HAVAYAEASLEK 402 (617)
Q Consensus 391 ~A~ASaea~~ee 402 (617)
.-.+.-+-.+.+
T Consensus 58 aERadREkl~~e 69 (94)
T 3jsv_C 58 AERHAREKLVEK 69 (94)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhH
Confidence 666666665554
No 87
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=37.64 E-value=1.4e+02 Score=31.76 Aligned_cols=108 Identities=14% Similarity=0.209 Sum_probs=76.4
Q ss_pred hhhhhhhHHHHHHhhhcccccccccccccCCchhHHHHHHHHHHhhhhhhhHHHhHHHHHHHHHHHHhhhhhhhcccccc
Q 007114 62 EKLVNLNILTMHVATRESEFEAFAKKREHILDDDSVETALAFDLLSGLLDSELRELENFITTLEADFVKAHELISSYTEL 141 (617)
Q Consensus 62 EKl~NL~~l~M~l~~~~~~~E~~~~~~~~i~~~~s~ekaleFDlL~gilDSEv~Ele~~~~tlq~~I~~~~~~i~s~~~~ 141 (617)
=|..=||.++..+.....++-.|..+ + .+|++|-..|+ .-|.++|++|..=+..++.++...... ++. .
T Consensus 257 ~k~TLLhylv~~v~~~~p~l~~f~~e---L---~~v~~Askv~~--~~l~~~~~~L~~~l~~v~~~l~~~~~~--~~~-~ 325 (483)
T 2j1d_G 257 KNITLLHYLITIVENKYPSVLNLNEE---L---RDIPQAAKVNM--TELDKEISTLRSGLKAVETELEYQKSQ--PPQ-P 325 (483)
T ss_dssp TTCBHHHHHHHHHHHHCGGGGGHHHH---T---TTHHHHHTCCH--HHHHHHHHHHHHHHHHHHHHHHHHHTS--CCC-T
T ss_pred CCccHHHHHHHHHHHhCchhhchHHH---H---hhHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHhhcc--CCC-c
Confidence 45556888888888887777766654 2 34566655554 446788999999999998888765432 122 2
Q ss_pred chhhH-HHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 007114 142 GKASI-EMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSAL 183 (617)
Q Consensus 142 g~~f~-~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~ 183 (617)
+..|. .|..=+..++..+...++++.++.. .|.++..+|
T Consensus 326 ~d~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~---~~~~l~~yF 365 (483)
T 2j1d_G 326 GDKFVSVVSQFITVASFSFSDVEDLLAEAKD---LFTKAVKHF 365 (483)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 45565 5999999999999999999888875 455666555
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.61 E-value=3.5e+02 Score=27.70 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=17.1
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhhhh
Q 007114 206 ENAKIKLQTAEQQRHFLRMLEKSLARE 232 (617)
Q Consensus 206 ~~~~~~mqt~eQqR~iLrMLEkSlA~e 232 (617)
+-+...+=..=.+||+++++--+-+..
T Consensus 326 F~~Eve~L~~i~HrNLV~L~gyC~s~~ 352 (487)
T 3oja_A 326 ERLECERENQARQREIDALKEQYRTVI 352 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHhcccccchhhHHHHhcChH
Confidence 444444444456999999987665543
No 89
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=36.49 E-value=1.1e+02 Score=26.30 Aligned_cols=70 Identities=14% Similarity=0.144 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHH
Q 007114 371 TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTE 450 (617)
Q Consensus 371 lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLne 450 (617)
+..+..+||++|++.+.+.....+. ....|.++|.-+..+|..... --..+..|-...+.|.-
T Consensus 17 Lq~~~~~LE~~l~e~E~~~~~e~~~----------~q~~i~~lE~eL~~~r~e~~~-------ql~EYq~LlnvKl~Le~ 79 (95)
T 3mov_A 17 GQKESRACLERIQELEDLLAKEKDN----------SRRMLTDKEREMAEIRDQMQQ-------QLNDYEQLLDVKLALDM 79 (95)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 3344567888888877754432222 222344555555444443322 12456678888888889
Q ss_pred HHHhhHh
Q 007114 451 EISFLRD 457 (617)
Q Consensus 451 EL~fLks 457 (617)
|++.||.
T Consensus 80 EIatYrk 86 (95)
T 3mov_A 80 EISAYRK 86 (95)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988875
No 90
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=36.26 E-value=1.5e+02 Score=25.18 Aligned_cols=22 Identities=41% Similarity=0.418 Sum_probs=9.9
Q ss_pred HHHHHHHHhHHHHHHHHHhHHH
Q 007114 377 SLERQLRESDIQLQHAVAYAEA 398 (617)
Q Consensus 377 sLEkQLkEse~QL~~A~ASaea 398 (617)
.||++++.++.++.++....+.
T Consensus 24 ~Le~~v~~le~~Le~s~~~q~~ 45 (79)
T 3cvf_A 24 ELEHQLRAMERSLEEARAERER 45 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 91
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=36.23 E-value=79 Score=33.29 Aligned_cols=53 Identities=26% Similarity=0.338 Sum_probs=40.4
Q ss_pred hhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 007114 445 NAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSL 508 (617)
Q Consensus 445 N~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl 508 (617)
...|.+||..++.+...|+.+..++..+-...... ..+...+|.+||++|..+
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~-----------l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQ-----------LFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999988776554444332 245678899999998766
No 92
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=35.51 E-value=3.2e+02 Score=29.10 Aligned_cols=19 Identities=5% Similarity=0.118 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 007114 373 EKVESLERQLRESDIQLQH 391 (617)
Q Consensus 373 EKv~sLEkQLkEse~QL~~ 391 (617)
.|.+.+..++..++..+..
T Consensus 84 q~skkml~~~~~~e~~~~~ 102 (409)
T 1m1j_C 84 QKSKKIIEEIIRYENTILA 102 (409)
T ss_dssp HHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3444444455555443333
No 93
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=34.95 E-value=49 Score=27.37 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=32.2
Q ss_pred HHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 007114 471 ETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVM 515 (617)
Q Consensus 471 ~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L 515 (617)
..|....+++..+-.-+.+...+|..|-+.|..||..|..||+.|
T Consensus 25 eRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344555555555555555566668899999999999999998864
No 94
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=34.70 E-value=27 Score=32.36 Aligned_cols=45 Identities=20% Similarity=0.208 Sum_probs=0.4
Q ss_pred HHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007114 291 LLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRE 335 (617)
Q Consensus 291 l~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe 335 (617)
+.|-||..|.-|.++.+-=.-|.+|...+++++..+++..+.+|.
T Consensus 7 L~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kq 51 (130)
T 3cl3_D 7 SLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQ 51 (130)
T ss_dssp --------------------------------------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 445555566666666655556777777888888877777766554
No 95
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=34.56 E-value=68 Score=26.42 Aligned_cols=40 Identities=28% Similarity=0.425 Sum_probs=31.3
Q ss_pred HHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHH
Q 007114 419 DLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEAS 465 (617)
Q Consensus 419 eLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~ 465 (617)
++|..+.-+ |+|.-+|-..|--|++||..+.+++..|+..
T Consensus 17 evK~ALaaS-------eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQse 56 (63)
T 2w6a_A 17 ELKKALATS-------EAKVQQLMKVNSSLSDELRKLQREIHKLQAE 56 (63)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh-------HHHHHHHHHHhHhhhHHHHHHHHHHHHHHhh
Confidence 355555444 5799999999999999999988888777653
No 96
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=34.07 E-value=44 Score=32.19 Aligned_cols=53 Identities=13% Similarity=0.210 Sum_probs=43.2
Q ss_pred HHHHHhh-----hhhhhhhh-------hHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHH
Q 007114 418 QDLKLKV-----SKADSRAD-------SAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAE 470 (617)
Q Consensus 418 EeLK~Kv-----skAESRAe-------~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~ 470 (617)
.++.-++ .+|++||+ .||..+..|-.+|-.|.++|...|.+-..+...|.|..
T Consensus 105 k~vsfrLGs~~Lk~a~~paE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl 169 (175)
T 3mud_A 105 KDVSFRLGSFNLEKVENPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTL 169 (175)
T ss_dssp SSCEEEEEEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555 78999999 99999999999999999999988888877777776543
No 97
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=32.56 E-value=89 Score=28.98 Aligned_cols=47 Identities=19% Similarity=0.148 Sum_probs=23.6
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHH
Q 007114 417 IQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAE 470 (617)
Q Consensus 417 IEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~ 470 (617)
.++-...|..|- .++..+-.-|.+|...|.--+.++.+|+.+|..+.
T Consensus 84 FeEAN~MVa~ar-------~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK 130 (135)
T 2e7s_A 84 FDEANNLVADAR-------MEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLK 130 (135)
T ss_dssp HHHHHHHHHHTT-------HHHHHHHHHHHHHHHTTTHHHHCC-----------
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566653 34555666778888888888888888888887654
No 98
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=32.13 E-value=90 Score=32.65 Aligned_cols=54 Identities=13% Similarity=0.131 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhh
Q 007114 371 TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKV 424 (617)
Q Consensus 371 lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~Kv 424 (617)
+.+++..|+++..+.+..+..+.+.....++++-.....-+.+-|-|.|||.+|
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNI 61 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 344555555555555555555555555555565555666778888899999876
No 99
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=32.02 E-value=54 Score=29.51 Aligned_cols=58 Identities=26% Similarity=0.313 Sum_probs=36.6
Q ss_pred HhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHH
Q 007114 284 LKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVE-------------------VKESVIASLRENLSEAQ 341 (617)
Q Consensus 284 L~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~-------------------~len~~e~LKe~i~~AE 341 (617)
++||-+-+.+-|+.+|-.++.-...=..-+-||+.++++.+ .+++-+.+||..+..+-
T Consensus 26 ~~~~~~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 26 FQGIDPFTMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555565555555544444455678998888888 66666666766665543
No 100
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=31.01 E-value=3.4e+02 Score=25.53 Aligned_cols=91 Identities=20% Similarity=0.234 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh----hhHHHHHHHHHHHHhHHHHHHHHHhHHHHH
Q 007114 325 VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA----TSEKVESLERQLRESDIQLQHAVAYAEASL 400 (617)
Q Consensus 325 ~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~----lsEKv~sLEkQLkEse~QL~~A~ASaea~~ 400 (617)
+|.+..++.++.+.---.-...-..++-+|..-|+--+.+|.-|+. ++-++.-.+.+|+....|
T Consensus 22 s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~q------------ 89 (167)
T 4gkw_A 22 SLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQ------------ 89 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHH------------
Confidence 3333333333333333333333456778888889888888888877 444555555555554432
Q ss_pred HHHHhHHHhHhhhHHHHHHHHHhhhhhhh
Q 007114 401 EKQNMLYSTVKDMENLIQDLKLKVSKADS 429 (617)
Q Consensus 401 eeqn~l~S~IsdMEnvIEeLK~KvskAES 429 (617)
||.---.|+-+-.+=.|||+|=+--|+
T Consensus 90 --QnQQSlDiRKLrELEADLKEKDsMVe~ 116 (167)
T 4gkw_A 90 --QNQQSLDMRKLGELEADLKEKDSMVES 116 (167)
T ss_dssp --HHHHHHHHHHTHHHHHTHHHHHHHHHH
T ss_pred --HhHhhhhHHHHHHHHhHHhhhhHHHHH
Confidence 222222344455555688888777665
No 101
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=30.17 E-value=36 Score=25.01 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=24.0
Q ss_pred hhhhhhHhhhhhHHhhHHHhhhhhhhhhh
Q 007114 343 RADGAEVRCKSLAETNIELNEDLKGSRAT 371 (617)
Q Consensus 343 ra~~aeskc~~LteTN~eL~~el~~Lk~l 371 (617)
|-.|-|.|++.|-..|..|..|+.-|+++
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45678899999999999999999988873
No 102
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=29.62 E-value=3e+02 Score=24.79 Aligned_cols=62 Identities=15% Similarity=0.262 Sum_probs=38.3
Q ss_pred hhhhhhhh-hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhh
Q 007114 363 EDLKGSRA-TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKAD 428 (617)
Q Consensus 363 ~el~~Lk~-lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAE 428 (617)
.+++.+.. |..-+.++|.+|.+.+ .|+..+++.-.+.+..-.+|..=...|.+++.+|...+
T Consensus 63 ~E~~~~~~EL~~~l~sie~dLeDLe----~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk 125 (130)
T 4dnd_A 63 EELDWTTNELRNGLRSIEWDLEDLE----ETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMK 125 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 6677888888888754 45555565555555555556666666666666666554
No 103
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=29.46 E-value=2.2e+02 Score=27.76 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHhh
Q 007114 321 KQVEVKESVIASLRENLSEAQARADGAEVRC 351 (617)
Q Consensus 321 eqL~~len~~e~LKe~i~~AEsra~~aeskc 351 (617)
.++...+..+..++.++..|+.+...|....
T Consensus 70 ~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~ 100 (369)
T 4dk0_A 70 NTLNTRKAALASYQAQLVARKTAYDVALSNY 100 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555544433
No 104
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A {Helicobacter pylori}
Probab=28.82 E-value=6.1e+02 Score=27.75 Aligned_cols=35 Identities=26% Similarity=0.324 Sum_probs=28.7
Q ss_pred HHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhccc
Q 007114 270 ACERLFEAENSAEVLKGISKELLGRLQIVLFNMNG 304 (617)
Q Consensus 270 ~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~a 304 (617)
-..|-++|-..+.-|.||=+|+..||..+-.+++-
T Consensus 407 ea~kearAtal~kNfsgIrkELsdKleN~NnNlnd 441 (569)
T 4dvz_A 407 EANRDARAIAYTQNLKGIKRELSDKLEKISKDLKD 441 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHhhhhhHHhHHHHHHHHhhhhccchh
Confidence 34456677788899999999999999999888863
No 105
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=28.27 E-value=2.6e+02 Score=23.33 Aligned_cols=98 Identities=16% Similarity=0.243 Sum_probs=60.7
Q ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH--hHHHh------HhhhHHHHHHHHHhhhhhhhh
Q 007114 359 IELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQN--MLYST------VKDMENLIQDLKLKVSKADSR 430 (617)
Q Consensus 359 ~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn--~l~S~------IsdMEnvIEeLK~KvskAESR 430 (617)
.++...++.+..++.++..+..++...+.++.......++...=-. ..|-. -.+.+.++..|+.+....+.
T Consensus 6 ~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~- 84 (117)
T 2zqm_A 6 PQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEV- 84 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHH-
Confidence 3566777788888888888888888888888887776665431000 01111 23667777777765555443
Q ss_pred hhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHH
Q 007114 431 ADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAE 470 (617)
Q Consensus 431 Ae~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~ 470 (617)
.. -.|...+..++.++..|+..|.+..
T Consensus 85 ------~i-------~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 85 ------RL-------NALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp ------HH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 3345555666666666766666543
No 106
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=28.02 E-value=1e+02 Score=24.51 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=25.5
Q ss_pred hhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHH
Q 007114 431 ADSAEEKLIILSEANAGLTEEISFLRDRLECLEA 464 (617)
Q Consensus 431 Ae~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~ 464 (617)
.+..+.++..|+..|.+|..+++.|+..+..|-.
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566678888888888888888888777666643
No 107
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=27.47 E-value=2.4e+02 Score=27.49 Aligned_cols=30 Identities=7% Similarity=0.073 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007114 313 RSKLDSLVKQVEVKESVIASLRENLSEAQA 342 (617)
Q Consensus 313 ~sKLkslEeqL~~len~~e~LKe~i~~AEs 342 (617)
...+..++.+|..++..+...+.++..|+.
T Consensus 69 ~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~ 98 (369)
T 4dk0_A 69 INTLNTRKAALASYQAQLVARKTAYDVALS 98 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 108
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=27.44 E-value=1.8e+02 Score=25.17 Aligned_cols=64 Identities=16% Similarity=0.276 Sum_probs=52.3
Q ss_pred hhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 007114 447 GLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAM 510 (617)
Q Consensus 447 eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~ 510 (617)
+..+-|..||..++.||..|.....----|..||-.--+-+-+.-+-||.-...||..|-.+.+
T Consensus 16 ~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke 79 (93)
T 3t98_B 16 QFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKE 79 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788899999999999986554445678999888888888999999999999999887744
No 109
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=26.53 E-value=3.6e+02 Score=24.41 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 007114 310 AGLRSKLDSLVKQVEVKES 328 (617)
Q Consensus 310 sel~sKLkslEeqL~~len 328 (617)
+++.+.|+.||.++..+.+
T Consensus 5 ~~i~~~l~~Leae~q~L~~ 23 (119)
T 3etw_A 5 ASLVGELQALDAEYQNLAN 23 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4677788888888875443
No 110
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=25.79 E-value=5.9e+02 Score=27.07 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=8.4
Q ss_pred hhhhHHHHHhhHhHHHHHH
Q 007114 445 NAGLTEEISFLRDRLECLE 463 (617)
Q Consensus 445 N~eLneEL~fLksr~~~LE 463 (617)
.-++-+++..|+..+..-+
T Consensus 86 skkml~~~~~~e~~~~~~~ 104 (409)
T 1m1j_C 86 SKKIIEEIIRYENTILAHE 104 (409)
T ss_dssp HHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchH
Confidence 3344455555544333333
No 111
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=25.46 E-value=3.1e+02 Score=23.30 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=22.0
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHhhhc
Q 007114 497 ERERLRQQISSLAMENKVMVVKLQQT 522 (617)
Q Consensus 497 ErErL~~Qissl~~eNk~L~~k~k~~ 522 (617)
--|||+..|-|+.=||++|.+|++..
T Consensus 47 d~ErLNDEiislNIENNlL~~rl~~l 72 (75)
T 3a7o_A 47 NTERLNDELISGTIENNVLQQKLSDL 72 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHhhHHHHHhHHHHHHHHHHHHHH
Confidence 35889999999999999999999853
No 112
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=25.41 E-value=4.1e+02 Score=24.60 Aligned_cols=49 Identities=24% Similarity=0.201 Sum_probs=23.8
Q ss_pred hhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 007114 351 CKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEK 402 (617)
Q Consensus 351 c~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~ee 402 (617)
|+.|.+-|--|..|+..=+.+ ...|+.=...++.++.+++-..++++.+
T Consensus 81 ~~~L~eYn~rL~~E~~dR~~L---~~~L~~~~~~~~~~l~e~e~~leeyK~K 129 (152)
T 4fla_A 81 CLLLAEYNGRLAAELEDRRQL---ARMLVEYTQNQKDVLSEKEKKLEEYKQK 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555444433 2233444444444455555555555544
No 113
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=25.40 E-value=4e+02 Score=24.44 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHhHHHHH
Q 007114 372 SEKVESLERQLRESDIQLQHAVAYAEASL 400 (617)
Q Consensus 372 sEKv~sLEkQLkEse~QL~~A~ASaea~~ 400 (617)
+..-..|+.||.....-+..+.+-+-+.+
T Consensus 24 rN~T~lLq~qLTqAQe~l~~~eaQAaTCN 52 (121)
T 3mq7_A 24 RNVTHLLQQELTEAQKGFQDVEAQAATAN 52 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556788888888777777776666554
No 114
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=24.77 E-value=1.5e+02 Score=30.52 Aligned_cols=26 Identities=12% Similarity=0.015 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHH
Q 007114 373 EKVESLERQLRESDIQLQHAVAYAEA 398 (617)
Q Consensus 373 EKv~sLEkQLkEse~QL~~A~ASaea 398 (617)
.|++.|..++..++..+.++.+....
T Consensus 5 ~~~~~~~~~~~~~e~~i~~~~~~i~~ 30 (323)
T 1lwu_C 5 KTVQKILEEVRILEQIGVSHDAQIQE 30 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHH
Confidence 45555555555555544444433333
No 115
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=24.29 E-value=7.1e+02 Score=27.00 Aligned_cols=22 Identities=14% Similarity=0.108 Sum_probs=12.3
Q ss_pred HHHHHhhhhhhhhhHHHHHHhh
Q 007114 499 ERLRQQISSLAMENKVMVVKLQ 520 (617)
Q Consensus 499 ErL~~Qissl~~eNk~L~~k~k 520 (617)
+.|..+|..|...-..+..+|.
T Consensus 178 ~~l~~ki~~l~~~~~~~~~~~~ 199 (464)
T 1m1j_B 178 DSLHKKIQKLENAIATQTDYCR 199 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3455555555555555566665
No 116
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=22.99 E-value=4.4e+02 Score=24.17 Aligned_cols=85 Identities=28% Similarity=0.370 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhHHHHHhh----HHHhhh------hhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhh
Q 007114 412 DMENLIQDLKLKVSKADSRADSAEEKLII----LSEANA------GLTEEISFLRDRLECLEASLHQAEETKLATAKDIG 481 (617)
Q Consensus 412 dMEnvIEeLK~KvskAESRAe~AE~kc~~----LtEtN~------eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~ 481 (617)
+||..|+.|-....||++-.+-.+-+... ---.|. .|-++|+..++|...|-.+...
T Consensus 2 ~me~avdkLe~mFqKA~sDLdyiq~RLe~Ef~~~~Pd~A~e~NPv~Ll~~LsaIk~ry~~L~~q~~~------------- 68 (123)
T 4aj5_K 2 HMEAEVDKLELMFQKAESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSVIKSRYQTLYARFKP------------- 68 (123)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCTTHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred cHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhCCccccccChHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 68888888888888888765555444321 112223 6777777777777666555543
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhh
Q 007114 482 IRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQQ 521 (617)
Q Consensus 482 ~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L~~k~k~ 521 (617)
+|.|-.++...|-+--..|+-+++.++.
T Consensus 69 ------------iaaeQke~~d~ir~tL~~tm~miQ~LQ~ 96 (123)
T 4aj5_K 69 ------------VAVEQKESKSRICATVKKTMNMIQKLQK 96 (123)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555554
No 117
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=22.92 E-value=60 Score=24.00 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=24.7
Q ss_pred hhhhhhHhhhhhHHhhHHHhhhhhhhhh
Q 007114 343 RADGAEVRCKSLAETNIELNEDLKGSRA 370 (617)
Q Consensus 343 ra~~aeskc~~LteTN~eL~~el~~Lk~ 370 (617)
|-+|-|.||+.|-.-|.+|..++.-|++
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5678899999999999999999998887
No 118
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=22.57 E-value=3.3e+02 Score=23.43 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=16.3
Q ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 007114 359 IELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEA 398 (617)
Q Consensus 359 ~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea 398 (617)
.-|..||..=+.+++.+...=.-..-.+++|+.|.+-...
T Consensus 17 SALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~e 56 (81)
T 1wt6_A 17 EALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRD 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555543333333333344433333333
No 119
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=22.27 E-value=63 Score=23.90 Aligned_cols=28 Identities=11% Similarity=0.175 Sum_probs=24.3
Q ss_pred hhhhhhHhhhhhHHhhHHHhhhhhhhhh
Q 007114 343 RADGAEVRCKSLAETNIELNEDLKGSRA 370 (617)
Q Consensus 343 ra~~aeskc~~LteTN~eL~~el~~Lk~ 370 (617)
|-.|-|.|++.|-..|..|..|+.-|++
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5678899999999999999999998887
No 120
>4i1l_A Scurfin, forkhead box protein P3; FOXP3, dimerization, complex ensemble, stability, regulatory activity, acetyation, DNA-binding, metal-binding; 2.10A {Mus musculus}
Probab=22.09 E-value=1.5e+02 Score=26.07 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=25.7
Q ss_pred hhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 007114 474 LATAKDIGIRTKVITNLVMQMAVERERLRQQISS 507 (617)
Q Consensus 474 ~stakdI~~~tK~i~dLv~QLa~ErErL~~Qiss 507 (617)
..+.-+--++..++-.|=.||+.||+||+-=..-
T Consensus 42 drS~AQcrvQ~qvVq~LE~QL~kEreRLqAM~~H 75 (93)
T 4i1l_A 42 EKGKAQCLLQREVVQSLEQQLELEKEKLGAMQAH 75 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677788889999999999999764433
No 121
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=22.06 E-value=2.7e+02 Score=26.94 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 007114 321 KQVEVKESVIASLRENLSEAQARADGAE 348 (617)
Q Consensus 321 eqL~~len~~e~LKe~i~~AEsra~~ae 348 (617)
.++...+..+..++.++..|+.+...++
T Consensus 69 ~~~~~~~a~l~~~~a~l~~a~~~~~~a~ 96 (341)
T 3fpp_A 69 NQIKEVEATLMELRAQRQQAEAELKLAR 96 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444445555555444443
No 122
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=21.91 E-value=1.2e+02 Score=26.07 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=31.0
Q ss_pred hhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHH
Q 007114 429 SRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQ 468 (617)
Q Consensus 429 SRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~q 468 (617)
.|.+..+.++..|...|..|..++..|+..+..|-.-|.+
T Consensus 36 ~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566788888899999999888888888877776664
No 123
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=21.36 E-value=2.6e+02 Score=26.32 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=41.6
Q ss_pred HhhhhhhhHHHhHHHHHHHHHHHHhhhhhhhccccccchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 007114 105 LLSGLLDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALD 184 (617)
Q Consensus 105 lL~gilDSEv~Ele~~~~tlq~~I~~~~~~i~s~~~~g~~f~~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~~ 184 (617)
+|+.|||.=|...-.+++.|..+|...+..+..... .+.-..|-+++..+..+|+-....++++..|.
T Consensus 172 ll~~lld~ivd~y~~~l~~i~~~id~lE~~v~~~~~------------~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~ 239 (269)
T 2bbh_A 172 LLYSLIDALVDDYFVLLEKIDDEIDVLEEEVLERPE------------KETVQRTHQLKRNLVELRKTIWPLREVLSSLY 239 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999998887654321 11222344444444444444444444444443
No 124
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=21.19 E-value=3.8e+02 Score=24.89 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=52.7
Q ss_pred HHHhhhhhhhHH-HhHHH----HHHHHHHHHhhhhhhhccccccchhhHHHHHhhhhHHHHHHH-HHHHHHHHHHhhHHH
Q 007114 103 FDLLSGLLDSEL-RELEN----FITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQ-SRDQILEIKKQSAKF 176 (617)
Q Consensus 103 FDlL~gilDSEv-~Ele~----~~~tlq~~I~~~~~~i~s~~~~g~~f~~~~~KL~~~~~sLkQ-~~e~i~eik~qsa~f 176 (617)
=|.+.-|.+|++ +||.. -|+.++..+.+.+.++.+... .+-+++..-.+.|++ ++-.+.++|.+..-+
T Consensus 45 ~~~v~ql~~sel~qel~~~l~~~ld~l~~~~~~l~~~L~P~t~------el~~~l~~~~e~Lr~~L~~d~EelR~~l~p~ 118 (165)
T 1gs9_A 45 EQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAE------ETRARLSKELQAAQARLGADMEDVRGRLVQY 118 (165)
T ss_dssp HHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCS------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888999 77555 578899999999999988875 445666655555554 666777888887776
Q ss_pred HHHH
Q 007114 177 QRTL 180 (617)
Q Consensus 177 qr~~ 180 (617)
.--+
T Consensus 119 ~~el 122 (165)
T 1gs9_A 119 RGEV 122 (165)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 125
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.10 E-value=3.4e+02 Score=22.64 Aligned_cols=32 Identities=3% Similarity=0.045 Sum_probs=18.7
Q ss_pred cccchhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 007114 302 MNGSVQREAGLRSKLDSLVKQVEVKESVIASL 333 (617)
Q Consensus 302 L~as~~REsel~sKLkslEeqL~~len~~e~L 333 (617)
++....+=..+..++..++.+++..+.+.++|
T Consensus 15 ~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL 46 (117)
T 2zqm_A 15 LESYQQQLQLVVQQKQKVQLELTEAKKALDEI 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444556666667777777555555555
No 126
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=20.84 E-value=3.5e+02 Score=22.26 Aligned_cols=31 Identities=10% Similarity=0.177 Sum_probs=18.5
Q ss_pred ccchhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 007114 303 NGSVQREAGLRSKLDSLVKQVEVKESVIASL 333 (617)
Q Consensus 303 ~as~~REsel~sKLkslEeqL~~len~~e~L 333 (617)
+....+=..+..++..++.+++..+-+..+|
T Consensus 11 ~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL 41 (107)
T 1fxk_A 11 QQLQQQAQAISVQKQTVEMQINETQKALEEL 41 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444556667777777777655555555
No 127
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=20.75 E-value=3.5e+02 Score=22.21 Aligned_cols=40 Identities=10% Similarity=0.180 Sum_probs=30.1
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHH
Q 007114 360 ELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEAS 399 (617)
Q Consensus 360 eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~ 399 (617)
++...++.+..++.++..+..++...+.++....-..++.
T Consensus 2 ~~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL 41 (107)
T 1fxk_A 2 NVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEEL 41 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777888888888888888888887777666553
No 128
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=20.68 E-value=3.3e+02 Score=23.46 Aligned_cols=45 Identities=22% Similarity=0.184 Sum_probs=32.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHh
Q 007114 365 LKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYST 409 (617)
Q Consensus 365 l~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~ 409 (617)
+.++++|+-||..+|.+---|+-.|...++.-...+.+++.-..+
T Consensus 25 ~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~e 69 (81)
T 3qh9_A 25 LQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHH
Confidence 455566788999999999899998888887666666664444443
No 129
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=20.45 E-value=73 Score=23.43 Aligned_cols=29 Identities=10% Similarity=0.149 Sum_probs=0.0
Q ss_pred hhhhhhHhhhhhHHhhHHHhhhhhhhhhh
Q 007114 343 RADGAEVRCKSLAETNIELNEDLKGSRAT 371 (617)
Q Consensus 343 ra~~aeskc~~LteTN~eL~~el~~Lk~l 371 (617)
|-.|-|.||+.|-.-|..|..++.-||++
T Consensus 1 RMnQLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 1 RMKXIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhhHHHHHHHHHHHH
Done!