Query 007115
Match_columns 617
No_of_seqs 238 out of 779
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 19:08:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007115.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007115hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02830 UDP-sugar pyrophospho 100.0 2E-128 4E-133 1080.1 52.6 570 15-609 3-574 (615)
2 PLN02435 probable UDP-N-acetyl 100.0 3.2E-93 7E-98 777.8 39.2 413 38-490 21-447 (493)
3 PLN02474 UTP--glucose-1-phosph 100.0 5E-93 1.1E-97 772.4 37.2 450 69-608 9-461 (469)
4 KOG2638 UDP-glucose pyrophosph 100.0 3.1E-90 6.7E-95 718.7 30.8 438 84-614 52-496 (498)
5 cd06424 UGGPase UGGPase cataly 100.0 8.7E-89 1.9E-93 709.2 28.1 315 141-458 1-315 (315)
6 PTZ00339 UDP-N-acetylglucosami 100.0 1.1E-86 2.3E-91 728.4 36.5 416 43-490 2-438 (482)
7 PF01704 UDPGP: UTP--glucose-1 100.0 2.7E-86 5.8E-91 717.4 26.2 412 86-584 2-420 (420)
8 KOG2388 UDP-N-acetylglucosamin 100.0 1.9E-78 4E-83 646.1 24.5 413 39-490 3-429 (477)
9 cd04193 UDPGlcNAc_PPase UDPGlc 100.0 1.4E-74 3E-79 609.0 27.9 312 129-458 2-323 (323)
10 cd00897 UGPase_euk Eukaryotic 100.0 1.1E-74 2.3E-79 601.5 25.9 288 138-460 1-290 (300)
11 COG4284 UDP-glucose pyrophosph 100.0 2.3E-69 4.9E-74 578.0 30.2 441 37-607 13-466 (472)
12 cd04180 UGPase_euk_like Eukary 100.0 3.7E-62 7.9E-67 502.9 27.2 266 141-456 1-266 (266)
13 COG1207 GlmU N-acetylglucosami 98.3 8.5E-05 1.8E-09 80.6 20.9 274 140-545 2-280 (460)
14 PRK14359 glmU bifunctional N-a 98.1 0.00099 2.1E-08 73.1 26.0 178 141-395 3-180 (430)
15 PRK14356 glmU bifunctional N-a 98.1 0.00036 7.9E-09 77.3 21.8 41 140-183 5-45 (456)
16 PRK15480 glucose-1-phosphate t 98.1 0.00013 2.9E-09 76.8 16.7 182 140-394 3-187 (292)
17 PRK05293 glgC glucose-1-phosph 98.0 0.00029 6.2E-09 76.3 17.5 197 139-395 2-205 (380)
18 PRK00844 glgC glucose-1-phosph 97.9 0.00028 6E-09 77.5 17.0 205 137-396 2-213 (407)
19 TIGR01207 rmlA glucose-1-phosp 97.9 0.00024 5.2E-09 74.7 15.5 178 143-394 2-183 (286)
20 cd04197 eIF-2B_epsilon_N The N 97.9 0.00027 5.8E-09 70.6 15.1 134 143-323 3-145 (217)
21 cd02540 GT2_GlmU_N_bac N-termi 97.8 0.0015 3.2E-08 65.1 17.9 180 143-395 1-182 (229)
22 cd06425 M1P_guanylylT_B_like_N 97.8 0.00083 1.8E-08 67.6 15.8 176 143-390 3-183 (233)
23 cd02509 GDP-M1P_Guanylyltransf 97.8 0.00061 1.3E-08 71.0 15.0 196 142-396 2-208 (274)
24 KOG1322 GDP-mannose pyrophosph 97.7 0.0012 2.5E-08 69.8 16.5 187 139-394 8-198 (371)
25 cd06422 NTP_transferase_like_1 97.7 0.00075 1.6E-08 67.2 14.2 65 143-224 2-69 (221)
26 cd04181 NTP_transferase NTP_tr 97.7 0.00068 1.5E-08 66.6 13.7 139 143-333 1-142 (217)
27 PF00483 NTP_transferase: Nucl 97.7 0.00059 1.3E-08 68.8 13.5 184 143-395 2-192 (248)
28 cd02538 G1P_TT_short G1P_TT_sh 97.7 0.00043 9.3E-09 70.0 12.3 143 142-334 2-147 (240)
29 PRK14352 glmU bifunctional N-a 97.7 0.0021 4.5E-08 72.1 18.9 186 140-395 4-191 (482)
30 PRK14360 glmU bifunctional N-a 97.7 0.0011 2.3E-08 73.3 16.5 184 141-395 2-186 (450)
31 PRK14353 glmU bifunctional N-a 97.7 0.0019 4.1E-08 71.4 18.4 64 140-219 5-68 (446)
32 TIGR02092 glgD glucose-1-phosp 97.7 0.00049 1.1E-08 74.3 13.1 156 140-336 2-165 (369)
33 cd06915 NTP_transferase_WcbM_l 97.6 0.0012 2.7E-08 65.0 14.5 137 143-333 1-142 (223)
34 cd04189 G1P_TT_long G1P_TT_lon 97.6 0.0021 4.6E-08 64.5 16.3 68 141-224 1-71 (236)
35 PLN02241 glucose-1-phosphate a 97.6 0.0007 1.5E-08 75.1 13.9 215 139-395 2-231 (436)
36 cd02524 G1P_cytidylyltransfera 97.6 0.00088 1.9E-08 68.5 13.7 152 143-333 1-162 (253)
37 PRK00725 glgC glucose-1-phosph 97.6 0.0021 4.6E-08 71.1 17.4 209 136-396 11-225 (425)
38 PRK14355 glmU bifunctional N-a 97.6 0.002 4.4E-08 71.7 16.6 185 140-395 3-188 (459)
39 cd06426 NTP_transferase_like_2 97.6 0.0016 3.5E-08 64.5 14.2 136 143-332 1-140 (220)
40 PRK14358 glmU bifunctional N-a 97.5 0.0011 2.4E-08 74.4 14.2 146 140-342 7-154 (481)
41 PRK05450 3-deoxy-manno-octulos 97.5 0.0046 1E-07 62.5 16.8 128 140-324 2-130 (245)
42 TIGR02623 G1P_cyt_trans glucos 97.5 0.0027 6E-08 65.2 15.2 158 143-334 2-163 (254)
43 PRK02862 glgC glucose-1-phosph 97.5 0.0018 3.8E-08 71.8 14.7 156 140-334 3-165 (429)
44 cd06428 M1P_guanylylT_A_like_N 97.5 0.0046 1E-07 63.3 16.7 178 143-390 1-187 (257)
45 PRK14357 glmU bifunctional N-a 97.5 0.0037 7.9E-08 69.2 16.8 176 142-395 2-179 (448)
46 cd02508 ADP_Glucose_PP ADP-glu 97.4 0.0014 3.1E-08 64.5 11.9 138 143-320 1-144 (200)
47 TIGR01208 rmlA_long glucose-1- 97.4 0.0061 1.3E-07 65.4 17.1 140 143-333 2-144 (353)
48 COG1213 Predicted sugar nucleo 97.4 0.00048 1E-08 69.8 7.6 67 141-222 4-70 (239)
49 PF01128 IspD: 2-C-methyl-D-er 97.3 0.00023 5.1E-09 72.1 4.8 65 141-219 1-65 (221)
50 TIGR01173 glmU UDP-N-acetylglu 97.3 0.0053 1.2E-07 67.7 15.6 62 142-219 2-63 (451)
51 cd04198 eIF-2B_gamma_N The N-t 97.2 0.0045 9.8E-08 61.8 12.5 133 143-324 3-138 (214)
52 TIGR00454 conserved hypothetic 97.2 0.00062 1.3E-08 66.9 5.8 61 142-219 2-62 (183)
53 TIGR02091 glgC glucose-1-phosp 97.1 0.0095 2.1E-07 64.0 14.9 197 143-396 1-207 (361)
54 TIGR01105 galF UTP-glucose-1-p 97.1 0.0011 2.4E-08 70.0 7.3 64 140-219 3-69 (297)
55 PRK13385 2-C-methyl-D-erythrit 97.1 0.00075 1.6E-08 68.1 5.8 66 141-220 3-68 (230)
56 PRK14354 glmU bifunctional N-a 97.1 0.023 4.9E-07 63.0 17.8 40 141-183 3-42 (458)
57 PLN02728 2-C-methyl-D-erythrit 97.0 0.0011 2.4E-08 68.5 6.0 66 139-218 23-88 (252)
58 cd04182 GT_2_like_f GT_2_like_ 97.0 0.0012 2.6E-08 63.1 5.8 38 141-183 1-38 (186)
59 COG1208 GCD1 Nucleoside-diphos 97.0 0.0019 4.2E-08 70.0 7.9 140 141-334 2-146 (358)
60 cd02517 CMP-KDO-Synthetase CMP 97.0 0.018 3.9E-07 58.0 14.3 127 140-323 1-129 (239)
61 TIGR01479 GMP_PMI mannose-1-ph 96.9 0.014 3E-07 65.7 14.5 195 143-396 3-210 (468)
62 cd02523 PC_cytidylyltransferas 96.9 0.0096 2.1E-07 59.6 11.9 123 143-323 1-126 (229)
63 PF12804 NTP_transf_3: MobA-li 96.9 0.0018 4E-08 60.9 5.8 55 143-217 1-55 (160)
64 COG2266 GTP:adenosylcobinamide 96.9 0.0021 4.7E-08 62.4 6.2 61 142-220 2-62 (177)
65 PRK09451 glmU bifunctional N-a 96.8 0.048 1E-06 60.7 17.8 63 140-218 5-67 (456)
66 cd02513 CMP-NeuAc_Synthase CMP 96.8 0.045 9.8E-07 54.2 15.3 133 140-324 1-137 (223)
67 PRK13368 3-deoxy-manno-octulos 96.7 0.061 1.3E-06 54.1 15.9 59 140-219 2-61 (238)
68 TIGR03310 matur_ygfJ molybdenu 96.7 0.0028 6E-08 61.2 5.7 52 143-211 2-53 (188)
69 COG1209 RfbA dTDP-glucose pyro 96.6 0.0047 1E-07 64.0 6.8 141 143-334 3-146 (286)
70 PRK10122 GalU regulator GalF; 96.6 0.0038 8.3E-08 65.9 6.3 64 139-218 2-68 (297)
71 PF14134 DUF4301: Domain of un 96.5 0.036 7.8E-07 61.8 13.6 259 157-461 165-508 (513)
72 PRK00560 molybdopterin-guanine 96.5 0.0024 5.2E-08 63.2 3.8 39 140-183 8-47 (196)
73 cd02503 MobA MobA catalyzes th 96.5 0.0034 7.4E-08 60.4 4.7 37 142-183 2-38 (181)
74 TIGR02665 molyb_mobA molybdopt 96.3 0.0034 7.3E-08 60.7 3.6 38 141-182 1-38 (186)
75 TIGR01099 galU UTP-glucose-1-p 96.2 0.0073 1.6E-07 61.7 5.7 62 142-219 2-66 (260)
76 TIGR00453 ispD 2-C-methyl-D-er 96.2 0.0034 7.3E-08 62.4 3.0 39 142-183 1-39 (217)
77 COG1211 IspD 4-diphosphocytidy 96.2 0.0052 1.1E-07 62.7 4.3 65 140-218 4-68 (230)
78 cd02516 CDP-ME_synthetase CDP- 96.1 0.0043 9.2E-08 61.5 3.3 40 141-183 1-40 (218)
79 cd02541 UGPase_prokaryotic Pro 96.1 0.0091 2E-07 61.3 5.7 62 142-219 2-66 (267)
80 PRK00155 ispD 2-C-methyl-D-ery 96.1 0.0049 1.1E-07 61.9 3.5 41 140-183 3-43 (227)
81 TIGR03202 pucB xanthine dehydr 96.1 0.0059 1.3E-07 59.6 4.0 37 142-183 2-38 (190)
82 PRK00317 mobA molybdopterin-gu 96.0 0.0055 1.2E-07 59.9 3.6 39 140-182 3-41 (193)
83 PRK02726 molybdopterin-guanine 96.0 0.0057 1.2E-07 60.7 3.6 39 140-183 7-45 (200)
84 COG0448 GlgC ADP-glucose pyrop 95.9 0.11 2.4E-06 56.6 13.0 199 139-396 4-210 (393)
85 PLN02917 CMP-KDO synthetase 95.7 0.29 6.2E-06 51.8 15.3 183 140-395 47-237 (293)
86 PRK09382 ispDF bifunctional 2- 95.7 0.013 2.8E-07 64.2 5.2 43 139-184 4-46 (378)
87 PRK14489 putative bifunctional 95.7 0.009 2E-07 65.0 4.0 40 139-182 4-43 (366)
88 PRK14490 putative bifunctional 95.6 0.0089 1.9E-07 65.0 3.6 38 140-182 174-211 (369)
89 PRK14500 putative bifunctional 95.4 0.014 2.9E-07 63.2 4.1 39 140-183 160-198 (346)
90 cd02507 eIF-2B_gamma_N_like Th 95.3 0.038 8.2E-07 55.3 6.4 62 143-221 3-68 (216)
91 PRK13389 UTP--glucose-1-phosph 95.3 0.026 5.7E-07 59.8 5.5 63 141-219 9-74 (302)
92 cd04183 GT2_BcE_like GT2_BcbE_ 95.2 0.011 2.5E-07 59.1 2.5 38 143-183 1-41 (231)
93 COG0836 {ManC} Mannose-1-phosp 95.0 0.03 6.5E-07 59.4 5.1 198 141-396 2-212 (333)
94 PRK15460 cpsB mannose-1-phosph 94.9 0.047 1E-06 61.6 6.5 196 141-396 6-219 (478)
95 COG0746 MobA Molybdopterin-gua 94.8 0.022 4.7E-07 56.6 3.1 39 140-184 4-42 (192)
96 TIGR00466 kdsB 3-deoxy-D-manno 94.6 0.1 2.2E-06 53.2 7.6 35 143-183 2-36 (238)
97 KOG1460 GDP-mannose pyrophosph 93.5 0.59 1.3E-05 49.3 10.5 161 141-355 3-172 (407)
98 cd02518 GT2_SpsF SpsF is a gly 93.2 0.21 4.6E-06 50.2 6.7 60 143-219 2-62 (233)
99 COG4750 LicC CTP:phosphocholin 90.5 0.42 9E-06 47.6 5.0 38 143-183 3-43 (231)
100 COG1210 GalU UDP-glucose pyrop 90.0 0.43 9.4E-06 49.9 4.9 60 143-218 7-69 (291)
101 COG2068 Uncharacterized MobA-r 86.8 0.78 1.7E-05 45.9 4.2 59 140-215 5-63 (199)
102 TIGR03584 PseF pseudaminic aci 84.4 17 0.00036 36.8 12.6 131 143-324 2-134 (222)
103 COG1861 SpsF Spore coat polysa 65.1 12 0.00027 38.2 5.4 64 140-222 3-69 (241)
104 KOG1462 Translation initiation 49.1 15 0.00032 40.5 3.1 66 140-220 9-77 (433)
105 COG1791 Uncharacterized conser 33.1 93 0.002 30.7 5.5 66 539-606 70-137 (181)
106 COG1535 EntB Isochorismate hyd 31.8 2.4E+02 0.0051 28.3 8.0 102 170-294 49-151 (218)
107 COG1212 KdsB CMP-2-keto-3-deox 27.2 2E+02 0.0044 29.8 7.0 91 140-241 3-105 (247)
108 PF02348 CTP_transf_3: Cytidyl 22.8 2.5E+02 0.0055 27.3 6.8 34 143-184 2-37 (217)
109 PF14969 DUF4508: Domain of un 20.1 82 0.0018 28.2 2.3 30 51-81 59-88 (98)
No 1
>PLN02830 UDP-sugar pyrophosphorylase
Probab=100.00 E-value=2.1e-128 Score=1080.15 Aligned_cols=570 Identities=68% Similarity=1.089 Sum_probs=524.8
Q ss_pred hcCCchhhccCcchhhhccCCChhHHHHHHHHHHCCCcccccccccCCCCHHHHHHHHHHHhhcCCCCCccHHHHHHHHH
Q 007115 15 LGIDGAFADSAPNLKKNLHLLSSEQVELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTAR 94 (617)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gQ~HL~~~~~~l~~~~~e~~~L~~qL~~id~~~~~~l~~~~~~~~ 94 (617)
+-++.......+.|+.+++.+|+++++|+++|.++||+|||+||++++.+++||++|++||..+|..|++++.+|+.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gQ~HL~~~w~~l~~~~~e~~~L~~qL~~ld~~y~g~l~~~~~~~~ 82 (615)
T PLN02830 3 LSVASKSDSSVPSLHSNLALLSPDQRALVRRLLELGQSHLFEHWPEPGVDDDDKRRLLEQVARLDESYPGGLAAYVSNAK 82 (615)
T ss_pred CcccccccccccccccccccCChhHHHHHHHHHHcCcHHHHhhhhccCCCHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 44566666778999999999999999999999999999999999998667999999999999999999999999999999
Q ss_pred HHHhhccCCCCCCCCCCCCCCCcccccCCChhhhHHHHHhHHhhcceEEEEEcCCcCCcCCccCCcccCCcccCCCcchH
Q 007115 95 ELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFL 174 (617)
Q Consensus 95 ~~l~~s~~~~~~~~~~~p~vp~~~~l~~~~~~~~~~~~~G~~~l~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~l 174 (617)
+++..+..+.++|+.+.|.+|.+..+++++.+..+|++.|+++|+|+|||+|||||||||||++||++||+++.+++|||
T Consensus 83 ~~l~~s~~~~~~~~~i~P~vp~~~~~~~~~~~~~~~~~~Gl~~l~kvavllLaGGlGTRLG~~~pK~~lpv~~~~gkt~l 162 (615)
T PLN02830 83 ELLADSKEGVNPFEGWTPSVPEGEVLEYGSEEFVELEEAGLREAGNAAFVLVAGGLGERLGYSGIKVALPTETATGTCYL 162 (615)
T ss_pred HHHhhcccCCCchhhcccCCCccccccccchhhhHHHHHHHHHhCcEEEEEecCCcccccCCCCCCcceecccCCCCcHH
Confidence 99986656678999998867888888888877788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCC
Q 007115 175 QNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKN 254 (617)
Q Consensus 175 ql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~ 254 (617)
|++++||+++|+++.+...+..+.||||||||++||++|++||++|+|||++++||+||+|+++||+++++|++++++.+
T Consensus 163 ql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d 242 (615)
T PLN02830 163 QLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPND 242 (615)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHHHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCC
Confidence 99999999999998754233346899999999999999999999999999999999999999999998888999995555
Q ss_pred CCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCceeEEeeeCCcccccceEE
Q 007115 255 KYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGIT 334 (617)
Q Consensus 255 ~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~~~E~vG~i~ 334 (617)
+++++|+|+||||+|.+|++||+|++|+++|+||+||+||||+|++.+||.|||||+.++++|++|||+|+|+|++|++|
T Consensus 243 ~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN~L~~~Adp~flG~~~~~~~d~~~kvv~K~~~E~vGvi~ 322 (615)
T PLN02830 243 PYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTNGLVFKAIPAALGVSATKGFDMNSLAVPRKAKEAIGAIA 322 (615)
T ss_pred CCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEeccchhhhcccHHHhHHHHhcCCceEEEEEECCCCcccceEE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCccceeeeeeehhhhHHHHhhcCCccccccCCcccCCCC
Q 007115 335 RLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASK 414 (617)
Q Consensus 335 ~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gNinn~~~~L~~~~~~l~~~~~~l~~~vnpk~~d~~~ 414 (617)
++++.||+..++||||+|++++++.+++|+|++.+++||++|||||||+|++|++|+++|+++.+.||+||||||.|+++
T Consensus 323 ~~~~~dG~~l~~vVEYse~~~ll~~a~~p~g~l~~~~~~s~FPgNtN~L~v~L~a~~~~l~~~~~~lp~ivNpK~~d~~~ 402 (615)
T PLN02830 323 KLTHKDGREMVINVEYNQLDPLLRATGHPDGDVNDETGYSPFPGNINQLILKLGPYVKELAKTGGVIEEFVNPKYKDATK 402 (615)
T ss_pred EEecCCCCeeeEEEeecccCHHHHhccCCCcccccccccccCCCCceeeEeeHHHHHHHHHhCCCccceeccCcccCCCC
Confidence 99889999776779999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred CcccCcchhhhhhcccccCCCCCCceeEEEecCCceeecccCCCccc-ccCCCCCCCCChhhHHHHHHHHHHHHHHhhcc
Q 007115 415 TSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDA-AKVPKGNPYHSATSGEMAIYCANSLILRKVTR 493 (617)
Q Consensus 415 ~~~~~~~kLE~~m~D~~~~f~~~~~~g~~~V~R~~~FsPvKN~~~~~-~~~~~g~~~dsp~t~~~dl~~~~~~~L~~~~~ 493 (617)
+.++.+++||||||||++.+..+.++||++++||.+|+||||+..+| +|+++|++++||++++.|+|+.++++|+.
T Consensus 403 ~v~q~~trle~~mq~f~~~~~~~~~vg~~v~~~~~~f~PVKn~~s~a~~k~~~~~~~~~~~s~e~d~y~~~~llL~~--- 479 (615)
T PLN02830 403 TAFKSPTRLECMMQDYPKTLPPSAKVGFTVFDNWLAYSPVKNSPADGAAKVPEGNPTHSATSGEMAIYGANCLILRK--- 479 (615)
T ss_pred ceeecchHHHHHHHHHhhhcCcccccCceecCchheeccccCChHHhhhhcccCCCccCcchhhHHHHHHHHHHHHh---
Confidence 99999999999999999999877899998888999999999996666 66799999999999999999999999987
Q ss_pred ccccccccCCchhHHHhhhhccccCeeecCccccccCCeeecCCCeEEEcCCCCCCHHHHHhhc-CCCCCCCCCceEEEE
Q 007115 494 VSLSYCKNYSSELFWFLILSTCQAGAQVDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEIKNKV-SGSCSVSQKSTMVIK 572 (617)
Q Consensus 494 ~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~P~i~l~p~f~~~~~~~~~r~-~~~~~i~~~s~L~v~ 572 (617)
|++|.++... . ..+++++++.+|.|+|+|.|++++++|++|| +++|+|+++|+|+|+
T Consensus 480 -s~~~~~~~~~---------------~------~~~~~~~~~~~P~I~L~p~f~~~~~~~~~k~~~~~~si~~~s~L~v~ 537 (615)
T PLN02830 480 -AGADVEEPVE---------------D------VVFNGIEVEVGPRIVLKPAFALTFSELKKKVAPGSVKISQRSTLVLE 537 (615)
T ss_pred -cCCccccCcc---------------c------cccCCcccCCCCeEEECchhhhHHHHHHHHhcCCCCcccCCCeEEEE
Confidence 6666554321 1 1356678899999999999999999999999 999999999999999
Q ss_pred eceEEeeCeEEEEEEEEEcCCCCeEEecCCeEEeCCe
Q 007115 573 GRNVVLEDLSLNGALIIDSVDDAEVCYIMPILRYGGQ 609 (617)
Q Consensus 573 g~~~~~~~v~l~G~v~I~a~~~~~~~i~~~~~~~~~~ 609 (617)
|+++||+||+|+|+|+|.|++|++++|...+|.+.|-
T Consensus 538 G~~~~~~~v~LdG~viI~a~~~~~~~i~g~~v~N~g~ 574 (615)
T PLN02830 538 GADIVIENLSLDGALVVRAVPGAEVTVGGLRVKNKGW 574 (615)
T ss_pred eeeEEecCeEEEEEEEEEcCCCCeEEecCeEEecCCc
Confidence 9999999999999999999999999994435555443
No 2
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=100.00 E-value=3.2e-93 Score=777.80 Aligned_cols=413 Identities=23% Similarity=0.335 Sum_probs=357.9
Q ss_pred hHHHHHHHHHHCCCcccccccccCCCCHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCc
Q 007115 38 EQVELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLADSKAGKNPFDGFTPSVPTG 117 (617)
Q Consensus 38 ~~~~l~~~L~~~gQ~HL~~~~~~l~~~~~e~~~L~~qL~~id~~~~~~l~~~~~~~~~~l~~s~~~~~~~~~~~p~vp~~ 117 (617)
+.++|+++|.++||+|||+||+++ +++||++|++||.++|+.+ +. +.+++++. +. ..+++.+.| +|.+
T Consensus 21 ~~~~l~~~l~~~gQ~HLl~~w~~l--s~~e~~~L~~qL~~iD~~~---l~---~~~~~~~~-~~--~~~~~~i~P-~p~~ 88 (493)
T PLN02435 21 PPQALLERLKDYGQEDAFALWDEL--SPEERDLLVRDIESLDLPR---ID---RIIRCSLR-SQ--GLPVPAIEP-VPEN 88 (493)
T ss_pred cHHHHHHHHHHcChHHHHHhhhhC--CHHHHHHHHHHHHhcCHHH---HH---HHHHHHhh-cc--CCchhccCC-CChh
Confidence 356799999999999999999997 5899999999999999754 22 33444442 21 236677776 5776
Q ss_pred ccccCCC---hhhhHHHHHhHHhh--cceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhc
Q 007115 118 EVLKFGD---DTFINYEQAGVKEA--KNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLA 192 (617)
Q Consensus 118 ~~l~~~~---~~~~~~~~~G~~~l--~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~ 192 (617)
...++.. .+..+|+++|+++| +|||||+||||||||||+++|||++||++++++||||++++||+++|+++.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~Gl~~I~~gkvavvlLAGGqGTRLG~~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~- 167 (493)
T PLN02435 89 SVSTVEERTPEDRERWWKMGLKAISEGKLAVVLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQA- 167 (493)
T ss_pred hccchhccChHHHHHHHHHHHHHHhcCCEEEEEeCCCcccccCCCCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhh-
Confidence 5555432 45678999999999 49999999999999999999999999999999999999999999999998654
Q ss_pred cC----CcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchh
Q 007115 193 EG----KCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDV 268 (617)
Q Consensus 193 ~g----~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi 268 (617)
+| ....||||||||+.||++|++||++|+|||++++||+||+|+++||++ .+|++++ +++++++|+|+||||+
T Consensus 168 ~~~~~~~~~~IPl~IMTS~~T~~~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~-~dg~i~l--~~~~~i~~~P~GnGgi 244 (493)
T PLN02435 168 SSEGPGRPVTIHWYIMTSPFTDEATRKFFESHKYFGLEADQVTFFQQGTLPCVS-KDGKFIM--ETPFKVAKAPDGNGGV 244 (493)
T ss_pred cccccCCCCceeEEEeCCcchhHHHHHHHHhCCCCCCCccceEEEecCCcceEC-CCCCccc--CCCcccccCCCCCcHH
Confidence 22 235899999999999999999999999999999999999999999995 7999999 7889999999999999
Q ss_pred hHhhhhcChhHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCceeEEeeeCC-cccccceEEEEecCCCceeEEE
Q 007115 269 HALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVIN 347 (617)
Q Consensus 269 ~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~-~~E~vG~i~~~~~~dG~~~v~n 347 (617)
|.||++||+|++|+++|+||+||+||||+|++++||.|||||+.+++||++|||+|+ |.|++|++|+. ..||+++|
T Consensus 245 y~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~~EkvG~i~~~-~~~g~~~v-- 321 (493)
T PLN02435 245 YAALKSSRLLEDMASRGIKYVDCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYPQEKVGVFVRR-GKGGPLTV-- 321 (493)
T ss_pred HHHHHHCCcHHHHHhcCCEEEEEEecccccccccCHHHHHHHHhcCCceEEEeeecCCCCCceeEEEEe-cCCCCEEE--
Confidence 999999999999999999999999999999999999999999999999999999975 89999999974 36899886
Q ss_pred EeecCCCHHHhhcCCCC-CCCccCCCCCCCccceeeeeeehhhhHHHHhhcCCccccccCCc---ccCCCCCcccCcchh
Q 007115 348 VEYNQLDPLLRATGFPD-GDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPK---YKDASKTSFKSSTRL 423 (617)
Q Consensus 348 VEYsel~~~l~~~~~~~-g~l~~~~gf~~f~gNinn~~~~L~~~~~~l~~~~~~l~~~vnpk---~~d~~~~~~~~~~kL 423 (617)
|||+||+++++.+++++ |++. +.+||||||||++++++++.+.....+|+++..| |.|.. ++++||
T Consensus 322 vEYsEl~~~~~~~~~~~~g~L~------~~~gnI~~h~fs~~fL~~~~~~~~~~l~~H~A~Kkip~~~~~----~ngiK~ 391 (493)
T PLN02435 322 VEYSELDQAMASAINQQTGRLR------YCWSNVCLHMFTLDFLNQVANGLEKDSIYHLAEKKIPSIHGY----TMGLKL 391 (493)
T ss_pred EEeccCCHHHHhccCccccccc------cchhhHHHhhccHHHHHHHHHhhhhcCCceeeccccCccCCC----cceEEe
Confidence 99999999998887764 6554 4588999999999988877654334588888766 44432 368999
Q ss_pred hhhhcccccCCCCCCceeEEEecCCceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHh
Q 007115 424 ECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRK 490 (617)
Q Consensus 424 E~~m~D~~~~f~~~~~~g~~~V~R~~~FsPvKN~~~~~~~~~~g~~~dsp~t~~~dl~~~~~~~L~~ 490 (617)
|+||||+ |+.+.++++++|+|++|||||||+.+.. .|||+|||.+|+++|++||+.
T Consensus 392 E~FiFDv---f~~a~~~~~~eV~R~~EFaPlKN~~g~~--------~Dsp~tar~~l~~~~~~wl~~ 447 (493)
T PLN02435 392 EQFIFDA---FPYAPSTALFEVLREEEFAPVKNANGSN--------FDTPESARLLVLRLHTRWVVA 447 (493)
T ss_pred eeeeecc---hhhcCceEEEEEchhhccCcccCCCCCC--------CCCHHHHHHHHHHHHHHHHHH
Confidence 9999998 4446788999999999999999999754 899999999999999999998
No 3
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=100.00 E-value=5e-93 Score=772.37 Aligned_cols=450 Identities=16% Similarity=0.171 Sum_probs=370.5
Q ss_pred HHHHHHHhhcCCCCCccHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccCCChh-hhHHHHHhHHhhcceEEEEEc
Q 007115 69 RAFFDQVAKLNSSYPGGLKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDT-FINYEQAGVKEAKNAAFVLVA 147 (617)
Q Consensus 69 ~~L~~qL~~id~~~~~~l~~~~~~~~~~l~~s~~~~~~~~~~~p~vp~~~~l~~~~~~-~~~~~~~G~~~l~kvavvlLa 147 (617)
.++-..++.++.....++..|...+.++++.. .+..+|+.+.|+ +.+.+.+|++.. ...-.....++|+|+|||+||
T Consensus 9 ~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~-~~~i~~~~i~~~-~~~~~~~~~~l~~~~~~~~~~~~~L~k~avlkLn 86 (469)
T PLN02474 9 PQLRSAVAGLDQISENEKSGFISLVSRYLSGE-AQHIEWSKIQTP-TDEVVVPYDKLAPVPEDPEETKKLLDKLVVLKLN 86 (469)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHhCC-CCeecHHHccCC-chhhCcChhhccccccchhHHHHHHhcEEEEEec
Confidence 33333444433322244667888888888754 356889998874 566666665421 111122456789999999999
Q ss_pred CCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCCCCCCCC
Q 007115 148 GGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKP 227 (617)
Q Consensus 148 GGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~ 227 (617)
|||||||||++|||++|++ +++||||++++||+++++.|+ +.|||+||||+.||++|++||++|++| +
T Consensus 87 GGlGTrmG~~~PKs~i~v~--~~~sfldl~~~qi~~l~~~~g-------~~vPl~iMtS~~T~~~T~~~l~k~~~~---~ 154 (469)
T PLN02474 87 GGLGTTMGCTGPKSVIEVR--NGLTFLDLIVIQIENLNKKYG-------CNVPLLLMNSFNTHDDTQKIVEKYTNS---N 154 (469)
T ss_pred CCcccccCCCCCceeEEcC--CCCcHHHHHHHHHHHHHHHcC-------CCceEEEECCCchhHHHHHHHHHcCCC---c
Confidence 9999999999999999975 899999999999999999986 589999999999999999999999997 4
Q ss_pred CcEEEEEeCceeeEecCCCceecC-CCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccccccchHH
Q 007115 228 TQVKLLKQEKVACLDDNDARLAMD-PKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPAS 306 (617)
Q Consensus 228 ~~V~~F~Q~~~P~l~~~~g~~~l~-~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~~~~DP~~ 306 (617)
++|++|+|+++||++. +|++.+. +......+|+|+||||+|.||++||+|++|+++|+||+||+|||| |++++||.|
T Consensus 155 ~~i~~F~Q~~~P~l~~-~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDN-Lga~vDp~~ 232 (469)
T PLN02474 155 IEIHTFNQSQYPRVVA-DDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDN-LGAIVDLKI 232 (469)
T ss_pred cceEEEecCceeeEec-CCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCc-cccccCHHH
Confidence 6899999999999965 5666552 111235669999999999999999999999999999999999999 899999999
Q ss_pred HHHHhhcCCceeEEeeeCC-cccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCccceeeeee
Q 007115 307 LGVSATKQYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNINQLIL 385 (617)
Q Consensus 307 lG~~~~~~~d~~~kvv~r~-~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gNinn~~~ 385 (617)
|||++.++++|+||||+|+ +.+++|++|.. +|++++ +||+|+++..+.... |.. .|++| |||||||
T Consensus 233 lg~~~~~~~e~~~ev~~Kt~~d~kgG~l~~~---dgk~~l--vEysqvp~e~~~~f~--~~~----kf~~f--Ntnn~w~ 299 (469)
T PLN02474 233 LNHLIQNKNEYCMEVTPKTLADVKGGTLISY---EGKVQL--LEIAQVPDEHVNEFK--SIE----KFKIF--NTNNLWV 299 (469)
T ss_pred HHHHHhcCCceEEEEeecCCCCCCccEEEEE---CCEEEE--EEEecCCHHHHHhhc--ccc----cceee--eeeeEEE
Confidence 9999999999999999987 55666767754 999998 999999988765432 222 25554 9999999
Q ss_pred ehhhhHHHHhhcCCccccccCCcccCCCCCcccCcchhhhhhcccccCCCCCCceeEEEecCCceeecccCCCcccccCC
Q 007115 386 ELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVP 465 (617)
Q Consensus 386 ~L~~~~~~l~~~~~~l~~~vnpk~~d~~~~~~~~~~kLE~~m~D~~~~f~~~~~~g~~~V~R~~~FsPvKN~~~~~~~~~ 465 (617)
+|++++++++.....++.|+|||..|+. +.+|||+||||++++|+. ...++||| +||+||||+++.
T Consensus 300 ~L~~l~~~~~~~~l~~~~I~n~k~~~g~-----kv~q~Et~ig~ai~~f~~---~~~v~VpR-~rF~PVK~~~dl----- 365 (469)
T PLN02474 300 NLKAIKRLVEADALKMEIIPNPKEVDGV-----KVLQLETAAGAAIRFFDN---AIGINVPR-SRFLPVKATSDL----- 365 (469)
T ss_pred EHHHHHHHhhcCCCCceeecCCCCCCCe-----eEEEeHHHHHHHHHhCCC---ceEEEEch-hhccCCCCCCCH-----
Confidence 9999999987644556668899998753 688999999999999843 34459999 579999999975
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHhhccccccccccCCchhHHHhhhhccccCeeecCccccccCCeeecCCCeEEEcCC
Q 007115 466 KGNPYHSATSGEMAIYCANSLILRKVTRVSLSYCKNYSSELFWFLILSTCQAGAQVDDPVQEVFNGQEVEVWPRLTWKPK 545 (617)
Q Consensus 466 ~g~~~dsp~t~~~dl~~~~~~~L~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~P~i~l~p~ 545 (617)
.++|+|+|.++++|+.. +|... +...|.|+|+|.
T Consensus 366 --------l~~rsdly~l~~~~l~~--------------------------~~~~~------------~~~~p~IeL~~~ 399 (469)
T PLN02474 366 --------LLVQSDLYTLVDGFVIR--------------------------NKART------------NPSNPSIELGPE 399 (469)
T ss_pred --------HHHHHHHHHhccCeEEe--------------------------cCccc------------CCCCCcEEECcc
Confidence 58999999999999866 33322 335689999999
Q ss_pred CCCCHHHHHhhcCCCCCCCCCceEEEEeceEEeeCeEEEEEEEEEcCCCCeEEecCCeEEeCC
Q 007115 546 WGLTFSEIKNKVSGSCSVSQKSTMVIKGRNVVLEDLSLNGALIIDSVDDAEVCYIMPILRYGG 608 (617)
Q Consensus 546 f~~~~~~~~~r~~~~~~i~~~s~L~v~g~~~~~~~v~l~G~v~I~a~~~~~~~i~~~~~~~~~ 608 (617)
| .++++|.+||+++|+|.+++||+|+|||+||+||+|+|+|+|+|++|.+++||+|.+..+.
T Consensus 400 f-~~v~~f~~rf~~iPsl~~~d~LtV~Gdv~fG~~v~l~G~v~i~~~~~~~~~ip~g~~l~~~ 461 (469)
T PLN02474 400 F-KKVANFLSRFKSIPSIVELDSLKVSGDVWFGSGIVLKGKVTITAKSGVKLEIPDGAVLENK 461 (469)
T ss_pred c-ccHHhHHHhcCCCCCcccCCeEEEeeeeEECCCcEEEEEEEEEcCCCCeeecCCCcEecce
Confidence 6 5899999999999999999999999999999999999999999999999999999888653
No 4
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-90 Score=718.66 Aligned_cols=438 Identities=19% Similarity=0.244 Sum_probs=386.7
Q ss_pred ccHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccCCChhhhHHHHHhHHhhcceEEEEEcCCcCCcCCccCCcccC
Q 007115 84 GGLKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKVAL 163 (617)
Q Consensus 84 ~~l~~~~~~~~~~l~~s~~~~~~~~~~~p~vp~~~~l~~~~~~~~~~~~~G~~~l~kvavvlLaGGlGTRLG~~~pK~~l 163 (617)
.++..|+..++|++.+.. ....|+.+.+| |++.+++|++-. .. ..+..+|+|+||++|+||+||.|||.+||+++
T Consensus 52 ~e~~~F~~Lf~RyL~~~~-~~~~wdkI~~p-~~d~vv~y~~i~--~~-~~~~~~L~KLavlKLNGGlGttmGc~gPKS~i 126 (498)
T KOG2638|consen 52 TELSGFFNLFSRYLREKA-PTIDWDKIRPP-PEDAVVPYDDIK--NV-ELSKSLLNKLAVLKLNGGLGTTMGCKGPKSVI 126 (498)
T ss_pred hhHHHHHHHHHHHHhccC-CccchhhccCC-Chhhcccccccc--ch-hhHHHhhhheEEEEecCCcCCccccCCCceeE
Confidence 457789999999997654 57789999875 777888886532 23 67888999999999999999999999999999
Q ss_pred CcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEeCceeeEec
Q 007115 164 PAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDD 243 (617)
Q Consensus 164 pv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~ 243 (617)
+|+ +|.||||+.++||+.|+++|+ +++|+++|||++|+++|.+++++|.++ +.+|++|.|+++|+++.
T Consensus 127 eVR--~g~tFLDL~V~QIe~LN~~Y~-------~dVPlvLMNSfnTdedT~kil~ky~~~---kv~i~TF~QS~~PRi~~ 194 (498)
T KOG2638|consen 127 EVR--DGLTFLDLTVRQIENLNKTYN-------VDVPLVLMNSFNTDEDTQKILKKYAGS---KVDIKTFNQSKYPRIDK 194 (498)
T ss_pred EEc--CCCchhHHHHHHHHHHHhhcC-------CCCCEEEecccccchHHHHHHHHhcCC---ceeEEEeccccCCcccc
Confidence 998 999999999999999999997 589999999999999999999999874 77899999999999988
Q ss_pred CCCceecC-CCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCceeEEee
Q 007115 244 NDARLAMD-PKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAV 322 (617)
Q Consensus 244 ~~g~~~l~-~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv 322 (617)
++..|+.. ..+....+||||||||+|.+|+.||+||+|+++|+||+||+|+|| |++++|..+|.+++.++++|.|||+
T Consensus 195 etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDN-LGAtvDL~ILn~~i~~~~ey~MEvT 273 (498)
T KOG2638|consen 195 ETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDN-LGATVDLNILNHVINNNIEYLMEVT 273 (498)
T ss_pred ccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEecccc-ccceeeHHHHHHHhcCCCceEEEec
Confidence 88777765 345567899999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred eCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCC---CCCCccceeeeeeehhhhHHHHhhcCC
Q 007115 323 PRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETG---YSPFPGNINQLILELGPYMEELKKTGG 399 (617)
Q Consensus 323 ~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~g---f~~f~gNinn~~~~L~~~~~~l~~~~~ 399 (617)
+||.+|.+||++ |+|....++|+.+|+|++++.+|++ |++| ||||+|++|++++++++....
T Consensus 274 dKT~aDvKgGtL-------------i~y~G~lrlLEiaQVP~ehv~eFkS~kkFkif--NTNNlWinLkavKrlve~~~l 338 (498)
T KOG2638|consen 274 DKTRADVKGGTL-------------IQYEGKLRLLEIAQVPKEHVDEFKSIKKFKIF--NTNNLWINLKAVKKLVEENAL 338 (498)
T ss_pred ccchhhcccceE-------------EeecCEEEEEEeccCChhHhhhhccceeEEEe--ccCCeEEehHHHHHHhhcCcc
Confidence 999999999987 4455555555566778888888877 7766 999999999999999999888
Q ss_pred ccccccCCcccCCCCCcccCcchhhhhhcccccCCCCCCceeEEEecCCceeecccCCCcccccCCCCCCCCChhhHHHH
Q 007115 400 AIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMA 479 (617)
Q Consensus 400 ~l~~~vnpk~~d~~~~~~~~~~kLE~~m~D~~~~f~~~~~~g~~~V~R~~~FsPvKN~~~~~~~~~~g~~~dsp~t~~~d 479 (617)
.|++|+|||..+.. ..++|||+++++++++|++ ..|+ .||| +||.|||+++|+
T Consensus 339 ~meIi~N~kti~~~----~~viQleTa~GaaIk~F~n--a~gv-~VpR-sRFlPVKt~sDL------------------- 391 (498)
T KOG2638|consen 339 NMEIIVNPKTIDRG----IEVIQLETAAGAAIKFFDN--AIGV-NVPR-SRFLPVKTCSDL------------------- 391 (498)
T ss_pred cceeecChhhccCC----ceEEEEhhhhhHHHHhCCC--ceee-eccc-cccccccccccc-------------------
Confidence 99999999998742 2689999999999999965 4676 8999 999999999997
Q ss_pred HHHHHHHHHHhhccccccccccCCchhHHHhhhhccccCeeecCccccccCCeeecCCCeEEEcCCCCCCHHHHHhhcCC
Q 007115 480 IYCANSLILRKVTRVSLSYCKNYSSELFWFLILSTCQAGAQVDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEIKNKVSG 559 (617)
Q Consensus 480 l~~~~~~~L~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~P~i~l~p~f~~~~~~~~~r~~~ 559 (617)
.+++ ||+|+++.++ +++ +|.| ..+..|.|.|+|+|. ++++|..||++
T Consensus 392 ------lLv~-----S~Ly~ld~Gs--------------l~l-~~~r------~~~t~P~vkLg~~F~-kv~~f~~rfp~ 438 (498)
T KOG2638|consen 392 ------LLVM-----SNLYDLDNGS--------------LTL-SPSR------FGPTPPLVKLGSEFK-KVEDFLGRFPG 438 (498)
T ss_pred ------eeee-----cceeeccCCe--------------EEe-chhh------cCCCCCeeecchhhh-HHHHHHhcCCC
Confidence 2444 5999999654 666 5665 456789999999974 89999999999
Q ss_pred CCCCCCCceEEEEeceEEeeCeEEEEEEEEEcCCCCeEEecCCeEEeCCee---eeec
Q 007115 560 SCSVSQKSTMVIKGRNVVLEDLSLNGALIIDSVDDAEVCYIMPILRYGGQS---CKIS 614 (617)
Q Consensus 560 ~~~i~~~s~L~v~g~~~~~~~v~l~G~v~I~a~~~~~~~i~~~~~~~~~~~---~~~~ 614 (617)
+|+|.+++||+|+|||+||+||+|+|+|+|.|++|.+|+||+|.|..+.-- |+|-
T Consensus 439 iP~ileLdhLtVsGdV~FGknV~LkGtViIia~~~~~i~IP~gsVLEn~~v~gn~~il 496 (498)
T KOG2638|consen 439 IPDILELDHLTVSGDVWFGKNVSLKGTVIIIANEGDRIDIPDGSVLENKIVSGNLRIL 496 (498)
T ss_pred CCccceeceEEEeccEEeccceEEeeEEEEEecCCCeeecCCCCeeecceEecccccc
Confidence 999999999999999999999999999999999999999999988877644 5543
No 5
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=100.00 E-value=8.7e-89 Score=709.22 Aligned_cols=315 Identities=68% Similarity=1.107 Sum_probs=298.8
Q ss_pred eEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhC
Q 007115 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 220 (617)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~ 220 (617)
+|+|+||||||||||+++|||++|+++++++||||++++||+++|+++.+ +....||||||||+.||++|++||++|
T Consensus 1 ~a~vllaGG~GTRLG~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~---~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 1 AVFVLVAGGLGERLGYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKK---GEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred CEEEEecCCCccccCCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhc---cCCCceeEEEECCCchhHHHHHHHHHC
Confidence 58999999999999999999999999999999999999999999998863 223689999999999999999999999
Q ss_pred CCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCcccc
Q 007115 221 SYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLF 300 (617)
Q Consensus 221 ~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~~ 300 (617)
+|||++++||+||+|+++||+++.+|++.+..+++++++|+|+||||+|.||+++|+||+|+++|+||+||+||||+|++
T Consensus 78 ~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 78 NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 99999999999999999999976789984222778899999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCccce
Q 007115 301 KAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNI 380 (617)
Q Consensus 301 ~~DP~~lG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gNi 380 (617)
++||.|+||++++++|+++|||+|.|+|++|++|++++.||+++|+|||||||++++++++.++|+..+.+||++|||||
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~~~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~~~~~s~f~gNi 237 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPRKPKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDDKTGFSPFPGNI 237 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeCCCCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCcccccccccCCCee
Confidence 99999999999999999999999999999999999888899999999999999999999998888888888999999999
Q ss_pred eeeeeehhhhHHHHhhcCCccccccCCcccCCCCCcccCcchhhhhhcccccCCCCCCceeEEEecCCceeecccCCC
Q 007115 381 NQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNP 458 (617)
Q Consensus 381 nn~~~~L~~~~~~l~~~~~~l~~~vnpk~~d~~~~~~~~~~kLE~~m~D~~~~f~~~~~~g~~~V~R~~~FsPvKN~~ 458 (617)
|+|+|+|++|.+.|+++.+.+|+++||||.|.+++.+++|+||||||||++++|+.+.++|+++|+||.|||||||+.
T Consensus 238 ~~~~f~l~~~~~~l~~~~~~~~~~~n~ky~d~~~~~~~~p~rlE~~m~D~~~~f~~~~~~~~~~~~r~~~fsP~KN~~ 315 (315)
T cd06424 238 NQLVFSLGPYMDELEKTKGAIPEFINPKYKDATKTAFKSPTRLECMMQDIPLLFEEDYRVGFTVLDRWLCFSPVKNNL 315 (315)
T ss_pred eeEEEeHHHHHHHHhhccccCeeeecCCcccCCCCeecCchHHHHHHHHHHHhhcccceeEEEEEchhhcccccCCCC
Confidence 999999999999999888899999999999999999999999999999999999988999999999999999999974
No 6
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=100.00 E-value=1.1e-86 Score=728.43 Aligned_cols=416 Identities=22% Similarity=0.273 Sum_probs=348.3
Q ss_pred HHHHHHCCCcccccccccCCCCHHHHHHHHHHH-h---hcCCCCCccHHHHHHHHHHHHhhccCC-----CCCCCCCCCC
Q 007115 43 AKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQV-A---KLNSSYPGGLKSYIKTARELLADSKAG-----KNPFDGFTPS 113 (617)
Q Consensus 43 ~~~L~~~gQ~HL~~~~~~l~~~~~e~~~L~~qL-~---~id~~~~~~l~~~~~~~~~~l~~s~~~-----~~~~~~~~p~ 113 (617)
+++|.++||+|||+||+++ +++||++|.+|| . .+|+ ..+...++.+......+... ...-+.+.|
T Consensus 2 ~~~l~~~gQ~hl~~~~~~l--~~~e~~~l~~ql~~~~~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p- 75 (482)
T PTZ00339 2 LKVLTGDGQDHLREALKRR--SEGEFTPLATQILSSLTNVDF---KHRNAVLEPKLEEYNAEAPVGIDIDSIHNCNIEP- 75 (482)
T ss_pred hhhhhhcCHHHHHHHHHhC--CHHHHHHHHHHHHHHhhccCH---HHHHHHHHHHhhhhhcccccccccccccccccCC-
Confidence 5689999999999999996 599999999999 6 5554 33455555544322221110 001123444
Q ss_pred CCCcccccC--CChhhhHHHHHhHHhhc--ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhh
Q 007115 114 VPTGEVLKF--GDDTFINYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSC 189 (617)
Q Consensus 114 vp~~~~l~~--~~~~~~~~~~~G~~~l~--kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~ 189 (617)
+|.....+. ..+++.+|++.|+++|+ |+|+|+||||+|||||++.||+++|+++++++||||++++||++++.++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~Gl~~i~~gkvavViLAGG~GTRLg~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~ 155 (482)
T PTZ00339 76 PNNNTFIDIYEKEKERKELKESGLEIIKKGEVAVLILAGGLGTRLGSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAV 155 (482)
T ss_pred CCcccccccccCHHHHHHHHHhHHHHHhcCCeEEEEECCCCcCcCCCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhh
Confidence 355333222 23567889999999999 79999999999999999999999999988999999999999999999986
Q ss_pred hhccC--CcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCch
Q 007115 190 RLAEG--KCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD 267 (617)
Q Consensus 190 ~~~~g--~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGd 267 (617)
+. +| ....||||||||+.||+.|++||++|+|||+++++|+||+|+++||++.++|++++ +++++++|+|+||||
T Consensus 156 ~~-~~~~~~~~Ip~~IMTS~~t~~~t~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill--~~~~~i~~~P~GnGg 232 (482)
T PTZ00339 156 AV-SGGGDDPTIYILVLTSSFNHDQTRQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIM--SSQGSLCTAPGGNGD 232 (482)
T ss_pred cc-cccccCCCCCEEEEeCcchHHHHHHHHHhccccCCCcccEEEEecCCcceEecCCCCccc--CCCCceeeCCCCCcH
Confidence 43 22 13489999999999999999999999999999999999999999999877899999 777899999999999
Q ss_pred hhHhhhhcChhHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCC-ceeEEeeeCCcccccceEEEEecCCCceeEE
Q 007115 268 VHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQY-HVNSLAVPRKAKEAIGGITRLTHADGRSMVI 346 (617)
Q Consensus 268 i~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~~~~DP~~lG~~~~~~~-d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~ 346 (617)
+|.+|++||+|++|+++|+||+||+||||+|++++||.||||++.+++ +++.+||+|.|.|++|++|++ +|++.|
T Consensus 233 iy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~~EkvG~~~~~---~g~~~v- 308 (482)
T PTZ00339 233 VFKALAKCSELMDIVRKGIKYVQVISIDNILAKVLDPEFIGLASSFPAHDVLNKCVKREDDESVGVFCLK---DYEWQV- 308 (482)
T ss_pred HHHHHHHCCcHHHHHHcCCEEEEEEecCcccccccCHHHhHHHHHCCchhheeeeecCCCCCceeEEEEe---CCcccE-
Confidence 999999999999999999999999999999999999999999999999 999999988899999999976 898887
Q ss_pred EEeecCCCHHHhhcCCCCCCCccCCC-CCCCccceeeeeeehhhhHHHHhh-cCCccccccCCc---ccCCCCCcccCcc
Q 007115 347 NVEYNQLDPLLRATGFPDGDVNCETG-YSPFPGNINQLILELGPYMEELKK-TGGAIKEFVNPK---YKDASKTSFKSST 421 (617)
Q Consensus 347 nVEYsel~~~l~~~~~~~g~l~~~~g-f~~f~gNinn~~~~L~~~~~~l~~-~~~~l~~~vnpk---~~d~~~~~~~~~~ 421 (617)
|||+||+++++....+ ++| ..+++||||||||++++++++++. ....||.+++.| |.|... +.++++
T Consensus 309 -vEYsEi~~~~~~~~~~------~~g~l~f~~gnI~~h~fsl~fl~~~~~~~~~~~l~~H~a~Kkip~~~~~~-~~png~ 380 (482)
T PTZ00339 309 -VEYTEINERILNNDEL------LTGELAFNYGNICSHIFSLDFLKKVAANRLYESTPYHAARKKIPYINGPT-DKTMGI 380 (482)
T ss_pred -EEEeccChhhhhcccc------cCCeecccccceEEEEEEHHHHHHHhhhhhhhcCCceeeccccCeeCCCC-CCccee
Confidence 9999999998776543 234 234589999999999988887653 223589888766 455322 445789
Q ss_pred hhhhhhcccccCCCCCCceeEEEecCCceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHh
Q 007115 422 RLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRK 490 (617)
Q Consensus 422 kLE~~m~D~~~~f~~~~~~g~~~V~R~~~FsPvKN~~~~~~~~~~g~~~dsp~t~~~dl~~~~~~~L~~ 490 (617)
|||+||||++.+ +.++++++|+|++|||||||+.+.+ .|||+|||++|+++|++||++
T Consensus 381 K~E~FiFDvf~~---~~~~~~~ev~R~~eFsPlKNa~g~~--------~d~p~tar~~l~~~~~~wl~~ 438 (482)
T PTZ00339 381 KLEAFIFDIFRY---AKNVLILEVDREDEFAPIKNADGAA--------ADTILNAQKLLLSLHTRWLEA 438 (482)
T ss_pred eehhhhhhHHHh---ccccceeeechhhccccccCCCCCC--------CCCHHHHHHHHHHHHHHHHHH
Confidence 999999998444 5688999999999999999999764 899999999999999999999
No 7
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=100.00 E-value=2.7e-86 Score=717.37 Aligned_cols=412 Identities=26% Similarity=0.376 Sum_probs=325.4
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccCCChhhhHHHHHhH--HhhcceEEEEEcCCcCCcCCccCCcccC
Q 007115 86 LKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTFINYEQAGV--KEAKNAAFVLVAGGLGERLGYNGIKVAL 163 (617)
Q Consensus 86 l~~~~~~~~~~l~~s~~~~~~~~~~~p~vp~~~~l~~~~~~~~~~~~~G~--~~l~kvavvlLaGGlGTRLG~~~pK~~l 163 (617)
+..|+.++.+++.++.....+|+.+.++.|+ .+.++++.....| ..|. .+++|+|||+||||||||||+++||+++
T Consensus 2 ~~~f~~l~~~yl~~~~~~~~~~~~i~~~~~~-~~~~~~~l~~~~~-~~~~~~~~~~kvavl~LaGGlGTrlG~~~pK~~~ 79 (420)
T PF01704_consen 2 LDSFFSLFRRYLSESKSHQIDWDKIMPPPPE-EVVDYESLKEYEW-DEGLEAIALGKVAVLKLAGGLGTRLGCSGPKGLI 79 (420)
T ss_dssp HHHHHHHHHHHHHCCCCCS--GGGEEE-GTG-CEEEHHHHHHSCH-HHHHHHHHTTCEEEEEEEESBSGCCTESSBGGGS
T ss_pred hHHHHHHHHHHHHhcccCCcccccCCCCChh-hcCChhHhccccc-ccchhHHhhCCEEEEEEcCcccCccCCCCCCcce
Confidence 5789999999998755567889999886443 5556544322224 3444 4456999999999999999999999999
Q ss_pred CcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEeCceeeEec
Q 007115 164 PAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDD 243 (617)
Q Consensus 164 pv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~ 243 (617)
||. +++||||++++||+++++.|+ +.|||+||||+.||++|++||++ |||++.+ |++|+|+++||++.
T Consensus 80 ~v~--~~~t~ldl~~~qi~~l~~~~~-------~~iPl~iMtS~~T~~~T~~~l~k--yfg~~~~-v~~F~Q~~~P~i~~ 147 (420)
T PF01704_consen 80 PVR--EGKTFLDLIVEQIEALNKKYG-------VDIPLYIMTSFNTHEDTRKFLEK--YFGLDVD-VFFFKQSKLPAIDA 147 (420)
T ss_dssp EEE--TTEEHHHHHHHHHHHHHHHHT-------TT-EEEEEEETTTHHHHHHHHHH--GCGSSCC-EEEEEE-EEEEEET
T ss_pred ecC--CcccHHHHHHHHHHHHhcccc-------ccceEEEecCcccHHHHHHHHHH--hcCCCcc-eEEEeecCcceEeC
Confidence 996 899999999999999999986 48999999999999999999999 9999877 99999999999975
Q ss_pred CCCceecCCCC--C-CccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCceeEE
Q 007115 244 NDARLAMDPKN--K-YRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSL 320 (617)
Q Consensus 244 ~~g~~~l~~~~--~-~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~~~~DP~~lG~~~~~~~d~~~k 320 (617)
+|++++..+. + ....|+|+||||+|.+|++||+|++|+++|+||+||+|||| |++++||.||||+++++++|++|
T Consensus 148 -d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDN-L~a~~Dp~~lG~~~~~~~~~~~e 225 (420)
T PF01704_consen 148 -DGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDN-LGAVVDPVFLGYMIEKNADFGME 225 (420)
T ss_dssp -TTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTB-TT-TT-HHHHHHHHHTT-SEEEE
T ss_pred -CCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCC-cccccCHHHHHHHHhccchhhee
Confidence 6666552211 1 13469999999999999999999999999999999999999 99999999999999999999999
Q ss_pred eeeCC-cccccceEEEEecCCCceeEEEEeecCCCHHHh-hcCCCCCCCccCCCCCCCccceeeeeeehhhhHHHHhhcC
Q 007115 321 AVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLR-ATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTG 398 (617)
Q Consensus 321 vv~r~-~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~-~~~~~~g~l~~~~gf~~f~gNinn~~~~L~~~~~~l~~~~ 398 (617)
||+|+ |.|++|++|.. +|++++ |||+|+++... ..++ .++|.+| ||||+||+|++++++++...
T Consensus 226 vv~Kt~~dek~Gvl~~~---~G~~~v--vEysqip~~~~~~~~~-------~~~~~~F--ntnNi~~~l~~l~~~~~~~~ 291 (420)
T PF01704_consen 226 VVPKTSPDEKGGVLCRY---DGKLQV--VEYSQIPKEHMAEFKD-------IKGFLLF--NTNNIWFSLDFLKRLLERDE 291 (420)
T ss_dssp EEE-CSTTTSSEEEEEE---TTEEEE--EEGGGS-HHGHHHHTS-------TTTSBEE--EEEEEEEEHHHHHHHHHTTT
T ss_pred eeecCCCCCceeEEEEe---CCccEE--EEeccCCHHHHHhhhc-------cccceEE--EeceeeEEHHHHHHHHHhcc
Confidence 99986 77888888875 999998 99999998843 3232 2346656 99999999999999998877
Q ss_pred CccccccCCcccCCCCCcccCcchhhhhhcccccCCCCCCceeEEEecCCceeecccCCCcccccCCCCCCCCChhhHHH
Q 007115 399 GAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEM 478 (617)
Q Consensus 399 ~~l~~~vnpk~~d~~~~~~~~~~kLE~~m~D~~~~f~~~~~~g~~~V~R~~~FsPvKN~~~~~~~~~~g~~~dsp~t~~~ 478 (617)
..||+|+|+|.++... .-.+++|||++|++++..|. ..+++ +||| +||+||||++|+
T Consensus 292 ~~Lp~h~a~Kki~~~d-~~~~~~q~Et~i~~~i~~f~--~~~~v-~V~R-~rF~PvKn~~dL------------------ 348 (420)
T PF01704_consen 292 LQLPIHVAKKKIPYVD-NGIKVIQFETAIGFAIFQFD--NSFAV-EVPR-DRFAPVKNTSDL------------------ 348 (420)
T ss_dssp CCS-EEEEEEESSEEC-TEEEEEEEECGGGGGGGGCT--SEEEE-EE-G-GG--B-SSHHHH------------------
T ss_pred ccCccEEcchhccccc-CCccEEeehhhhhchHhhcc--CcEEE-EEcH-HHcCCccccCcc------------------
Confidence 8899999999763222 22378999999999888883 45565 9999 999999999985
Q ss_pred HHHHHHHHHHHhhccccccccccCCchhHHHhhhhccccCeeecCccccccCCeeecCCCeEEEcCCCCCCHHHHHhhcC
Q 007115 479 AIYCANSLILRKVTRVSLSYCKNYSSELFWFLILSTCQAGAQVDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEIKNKVS 558 (617)
Q Consensus 479 dl~~~~~~~L~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~P~i~l~p~f~~~~~~~~~r~~ 558 (617)
.+++ ||+|.++. |-.+.+|.+ .....|.|.|++.| +++++|.+||+
T Consensus 349 -------l~~~-----Sd~y~~~~---------------~~~~~~~~~------~~~~~p~i~lg~~f-~~v~~~~~r~~ 394 (420)
T PF01704_consen 349 -------LLVR-----SDLYDLDD---------------GTLVRNPLR------AFHTRPLIKLGDHF-KKVDDFEKRFP 394 (420)
T ss_dssp -------HHHH-----STTEEEET---------------TEEEEHCCH------CSSCHHEEEECGGG-SSHHHHHHHBS
T ss_pred -------eeec-----cceecccc---------------ceeeecccc------cCCCCCeeccCccc-CchHHhhhhcC
Confidence 3444 59999983 445556655 34456999999997 58999999999
Q ss_pred CCCCCCCCceEEEEeceEEeeCeEEE
Q 007115 559 GSCSVSQKSTMVIKGRNVVLEDLSLN 584 (617)
Q Consensus 559 ~~~~i~~~s~L~v~g~~~~~~~v~l~ 584 (617)
.+|+|.++++|+|+|||+||+||+|+
T Consensus 395 ~ip~l~~~~~l~v~gdv~fg~~v~lk 420 (420)
T PF01704_consen 395 SIPSLLELDSLTVSGDVTFGKNVVLK 420 (420)
T ss_dssp SS-BETTEEEEEEESSEEE-TT-EEE
T ss_pred CCCCcccCCcceEecceEECCCcEeC
Confidence 99999999999999999999999996
No 8
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=1.9e-78 Score=646.14 Aligned_cols=413 Identities=29% Similarity=0.435 Sum_probs=349.2
Q ss_pred HHHHHHHHHHCCCcccccccccCCCCHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcc
Q 007115 39 QVELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLADSKAGKNPFDGFTPSVPTGE 118 (617)
Q Consensus 39 ~~~l~~~L~~~gQ~HL~~~~~~l~~~~~e~~~L~~qL~~id~~~~~~l~~~~~~~~~~l~~s~~~~~~~~~~~p~vp~~~ 118 (617)
..++...|.+.||+|||++|+++ +++++..|++|++.++..++.++.. ..+.+.. +.. ..+ +|+|...
T Consensus 3 ~~~~~~~l~~~Gq~~l~~~w~eL--~~~~~~~l~~~ie~l~l~~~~~~~~--~~a~~~~--~~~-----~~~-~p~p~~~ 70 (477)
T KOG2388|consen 3 RTKLHLILLEAGQSHLFTQWPEL--SEADKESLLDQIEVLNLSRIHGLQR--ISANEDS--KPV-----GEI-RPVPESK 70 (477)
T ss_pred hhHHHHHHHHcChHhHhhhchhc--CHHHHHHHHHHHHhhcccccchhhh--cChhhcc--Ccc-----ccc-CCCCccc
Confidence 45688899999999999999997 5888889999999999988766544 2333221 111 112 2345533
Q ss_pred cccC---CChhhhHHHHHhHHhhc--ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhcc
Q 007115 119 VLKF---GDDTFINYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAE 193 (617)
Q Consensus 119 ~l~~---~~~~~~~~~~~G~~~l~--kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~ 193 (617)
.... ...+...|+..|+.+|+ ++|++++|||||||||+++||+++|+++++++|+||+++++|+++|.++... .
T Consensus 71 ~~~~~~~~~~d~d~~~~~G~~~i~~~~~a~~llaGgqgtRLg~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~-~ 149 (477)
T KOG2388|consen 71 SWPLKERGLDDVDQWWKEGLRLIAEGKVAVVLLAGGQGTRLGSSGPKGCYPIGLPSGKSLFQIQAERILKLQELASMA-V 149 (477)
T ss_pred cceecccCchhhhHHHhcChhhhhcCcceEEEeccCceeeeccCCCcceeecCCccccchhhhhHHHHHHHHHHHhhh-h
Confidence 3222 23445559999999998 9999999999999999999999999999999999999999999999988765 3
Q ss_pred CCcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhh
Q 007115 194 GKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLY 273 (617)
Q Consensus 194 g~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~ 273 (617)
+++..||||||||..|++.|++||+.|+|||+.++||+||+|+++||++ .+|++++ +.+.+++++|+|||++|.|+.
T Consensus 150 ~~~~~I~w~ImtS~~T~e~T~~~f~~~~~FGl~~~qv~~f~Q~~l~c~~-~~gk~~l--e~k~~~a~ap~gngg~y~ai~ 226 (477)
T KOG2388|consen 150 SDGVDIPWYIMTSAFTHEATLEYFESHKYFGLKPEQVTFFQQGKLPCLD-LDGKFIL--EQKNSLAAAPDGNGGLYRAIK 226 (477)
T ss_pred ccCCceEEEEecCCCccHHhHhHHhhcCCCCCChhHeeeeecccccccc-cCCceec--cCccchhcCCCCCcHHHHHHH
Confidence 4447999999999999999999999999999999999999999999995 5788999 788899999999999999999
Q ss_pred hcChhHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCceeEEeeeC-CcccccceEEEEecCC-CceeEEEEeec
Q 007115 274 SSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHAD-GRSMVINVEYN 351 (617)
Q Consensus 274 ~sG~ld~l~~~G~eyi~v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r-~~~E~vG~i~~~~~~d-G~~~v~nVEYs 351 (617)
++ |++|.+||++|+|+|||||+|++.+||+||||++.+++|+++|+|+| .|.|.+|++|.. + |.+++ ||||
T Consensus 227 ~~--l~dm~~rgi~~~hiy~VdnvL~k~aDP~fiG~~it~~~d~~~k~V~k~~p~E~vG~~~~~---~~G~~~v--vEYs 299 (477)
T KOG2388|consen 227 DQ--LEDMAARGIFYDHIYCVDNVLLKVADPVFIGFSITKEADVAAKVVPKINPGEVVGIVALK---GQGTPLV--VEYS 299 (477)
T ss_pred hh--hhHHHhhcccEEEEEEecceeeEecccceeeEEeechhhHhhhhccccCCCCceEEEEec---CCCceeE--EEec
Confidence 98 99999999999999999999999999999999999999999999997 689999999975 4 87666 9999
Q ss_pred CCCHHHhhcCCCCCCCccCCCCCCCccceeeeeeehhhhHHHHhhcCCccccccCCc---ccCCCC----CcccCcchhh
Q 007115 352 QLDPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPK---YKDASK----TSFKSSTRLE 424 (617)
Q Consensus 352 el~~~l~~~~~~~g~l~~~~gf~~f~gNinn~~~~L~~~~~~l~~~~~~l~~~vnpk---~~d~~~----~~~~~~~kLE 424 (617)
|++.+++.++.++| .++.++|||||||+|.++++++........+|+++.-| |.|.++ +.-++.+|+|
T Consensus 300 Ei~~~~a~~~~~d~-----g~l~~~agnI~nh~ft~dFLkk~~~~~~~~lp~H~a~kKip~~~~~g~~~kP~kpnGik~E 374 (477)
T KOG2388|consen 300 ELDAELAKAKAPDG-----GRLLFNAGNICNHFFTLDFLKKVTRASVPLLPYHKAEKKIPYVDSTGKLVKPTKPNGIKLE 374 (477)
T ss_pred ccCHHHHhhccccc-----CccccCCccHHHHHHhhHHHHHhhhcccccchhhhhhccccccccCCcccCCCCCCceeEE
Confidence 99999999998873 23567899999999999988877654434456665433 334322 2233578999
Q ss_pred hhhcccccCCCCCCceeEEEecCCceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHh
Q 007115 425 CMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRK 490 (617)
Q Consensus 425 ~~m~D~~~~f~~~~~~g~~~V~R~~~FsPvKN~~~~~~~~~~g~~~dsp~t~~~dl~~~~~~~L~~ 490 (617)
.||||+ |+...++++++|+|+++|||+||+.... .|||.||+.+++++|.+|+..
T Consensus 375 ~fifdv---f~~~k~f~~meV~Re~efSPlKng~~~~--------~D~p~T~~~~~l~~h~~wi~~ 429 (477)
T KOG2388|consen 375 QFIFDV---FPSAKKFGLMEVPREEEFSPLKNGGKSS--------TDNPSTARIALLRLHIRWIEK 429 (477)
T ss_pred eeeeee---cccccceeEEecchhhhcCccccCCCCC--------CCChhHHHHHHHHhhhhehhc
Confidence 999997 5556889999999999999999999864 999999999999999999988
No 9
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=100.00 E-value=1.4e-74 Score=609.05 Aligned_cols=312 Identities=28% Similarity=0.450 Sum_probs=283.3
Q ss_pred HHHHHhHHhhc--ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecC
Q 007115 129 NYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTS 206 (617)
Q Consensus 129 ~~~~~G~~~l~--kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS 206 (617)
+|++.|+++|+ ++|+|+||||+|||||+++||+++|+++++++||||+++++|++++.++++. +|+...|||+||||
T Consensus 2 ~~~~~G~~~i~~~~va~viLaGG~GTRLg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~-~~~~~~ip~~imtS 80 (323)
T cd04193 2 EWEEAGLKAIAEGKVAVLLLAGGQGTRLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEA-SGKKVPIPWYIMTS 80 (323)
T ss_pred hHHHHhHHHHhcCCEEEEEECCCcccccCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhc-cCCCCCceEEEEcC
Confidence 68899999999 9999999999999999999999999998899999999999999999999864 45556999999999
Q ss_pred ccchHHHHHHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCc
Q 007115 207 DDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGL 286 (617)
Q Consensus 207 ~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~ 286 (617)
++||++|++||++++|||+++++|++|.|+++||++ .+|++++ +++++++|+|+||||+|.+|++||+|++|+++|+
T Consensus 81 ~~t~~~t~~~~~~~~~fGl~~~~i~~f~Q~~~P~~~-~~g~~~l--~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~ 157 (323)
T cd04193 81 EATHEETRKFFKENNYFGLDPEQVHFFQQGMLPCVD-FDGKILL--EEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGI 157 (323)
T ss_pred hhHhHHHHHHHHhCCcCCCCCceEEEEecCceeeEc-CCCcccc--CCCCccccCCCCchHHHHHHHHCChHHHHHhCCC
Confidence 999999999999999999999999999999999995 6899999 6788999999999999999999999999999999
Q ss_pred eEEEEEeCCCccccccchHHHHHHhhcCCceeEEeeeCC-cccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCC
Q 007115 287 KWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDG 365 (617)
Q Consensus 287 eyi~v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~-~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g 365 (617)
||+||+||||+|++++||.||||++++++||++|||+|+ |.|++|++|.+ ||++++ |||+|+++++..+..++|
T Consensus 158 ~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~ekvG~l~~~---~g~~~v--vEysel~~~~~~~~~~~g 232 (323)
T cd04193 158 KYIHVYSVDNILVKVADPVFIGFCISKGADVGAKVVRKRYPTEKVGVVVLV---DGKPQV--VEYSEISDELAEKRDADG 232 (323)
T ss_pred EEEEEEecCcccccccCHHHhHHHHHcCCceEEEEEECCCCCCceeEEEEE---CCeEEE--EEeecCCHHHHhccCcCC
Confidence 999999999999999999999999999999999999997 99999999976 999988 999999999988876666
Q ss_pred CCccCCCCCCCccceeeeeeehhhhHHHHhhcCCccccccCCccc---CCCCC----cccCcchhhhhhcccccCCCCCC
Q 007115 366 DVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYK---DASKT----SFKSSTRLECMMQDYPKTLPPSA 438 (617)
Q Consensus 366 ~l~~~~gf~~f~gNinn~~~~L~~~~~~l~~~~~~l~~~vnpk~~---d~~~~----~~~~~~kLE~~m~D~~~~f~~~~ 438 (617)
++. +++||||+|||++++++++++.....||.|+++|.. |..+. +.++++|||+||||++.++ .
T Consensus 233 ~l~------f~~~ni~~~~fsl~fl~~~~~~~~~~l~~h~a~Kki~~~d~~~~~~~p~~~n~~klE~fifd~~~~~---~ 303 (323)
T cd04193 233 ELQ------YNAGNIANHFFSLDFLEKAAEMEEPSLPYHIAKKKIPYVDLEGGLVKPDEPNGIKLELFIFDVFPFA---K 303 (323)
T ss_pred cEe------cccchHhhheeCHHHHHHHHhhccccCCceEeccccCcccCcCcEeccCCCcEEEeHHHHHHHHHhC---C
Confidence 653 568999999999999999887655579999999843 43322 2345789999999987765 5
Q ss_pred ceeEEEecCCceeecccCCC
Q 007115 439 KVGFTVMDTWLAYAPVKNNP 458 (617)
Q Consensus 439 ~~g~~~V~R~~~FsPvKN~~ 458 (617)
++.+++|+|++||+||||++
T Consensus 304 ~~~~~eV~R~~~F~PvKn~~ 323 (323)
T cd04193 304 NFVCLEVDREEEFSPLKNAD 323 (323)
T ss_pred ceEEEEEChhhccccCcCCC
Confidence 78888999988999999984
No 10
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=100.00 E-value=1.1e-74 Score=601.54 Aligned_cols=288 Identities=19% Similarity=0.229 Sum_probs=255.1
Q ss_pred hcceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 007115 138 AKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (617)
Q Consensus 138 l~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l 217 (617)
|+|+|||+||||||||||+++|||++|+. +++||||++++||+++++.|+ +.||||||||+.||++|++||
T Consensus 1 l~kvavl~LaGG~GTRLG~~~pKg~~~v~--~~~s~l~l~~~~i~~l~~~~~-------~~iPl~iMtS~~T~~~T~~~l 71 (300)
T cd00897 1 LNKLVVLKLNGGLGTSMGCTGPKSLIEVR--DGKTFLDLTVQQIEHLNKTYG-------VDVPLVLMNSFNTDEDTKKIL 71 (300)
T ss_pred CCcEEEEEecCCcccccCCCCCceeeecC--CCCcHHHHHHHHHHHHHHHcC-------CCceEEEECCCcchHHHHHHH
Confidence 57999999999999999999999999995 899999999999999999986 489999999999999999999
Q ss_pred HhCCCCCCCCCcEEEEEeCceeeEecCCCceecC-CCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCC
Q 007115 218 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMD-PKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (617)
Q Consensus 218 ~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~-~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN 296 (617)
++|++ ++++|++|+|+++||++ .+|++.+. ..++++++|+|+||||+|.+|++||+|++|+++|+||+||+||||
T Consensus 72 ~~~~~---~~~~v~~F~Q~~~P~~~-~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDN 147 (300)
T cd00897 72 KKYAG---VNVDIHTFNQSRYPRIS-KETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDN 147 (300)
T ss_pred HHcCC---CccCeEEEecCCcccCc-cccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEeccc
Confidence 99886 78999999999999996 46777762 236779999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHhhcCCceeEEeeeCC-cccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCC
Q 007115 297 GLLFKAIPASLGVSATKQYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSP 375 (617)
Q Consensus 297 ~L~~~~DP~~lG~~~~~~~d~~~kvv~r~-~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~ 375 (617)
|++++||.||||++.++++|++|||+|+ |.|++|++|.. ||++++ |||+|+++..+.... +. ..|.+
T Consensus 148 -L~a~~Dp~~lg~~~~~~~~~~~evv~Kt~~dek~G~l~~~---~g~~~v--vEyse~p~e~~~~~~--~~----~~~~~ 215 (300)
T cd00897 148 -LGATVDLRILNHMVDNKAEYIMEVTDKTRADVKGGTLIQY---EGKLRL--LEIAQVPKEHVDEFK--SI----KKFKI 215 (300)
T ss_pred -ccccCCHHHHHHHHhcCCceEEEEeecCCCCCcccEEEEE---CCEEEE--EEeccCCHHHHHhhc--Cc----ccceE
Confidence 8999999999999999999999999986 67788988875 999988 999999998765432 11 12554
Q ss_pred CccceeeeeeehhhhHHHHhhcCCccccccCCcccCCCCCcccCcchhhhhhcccccCCCCCCceeEEEecCCceeeccc
Q 007115 376 FPGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVK 455 (617)
Q Consensus 376 f~gNinn~~~~L~~~~~~l~~~~~~l~~~vnpk~~d~~~~~~~~~~kLE~~m~D~~~~f~~~~~~g~~~V~R~~~FsPvK 455 (617)
+|||||||++++++++++.....+|.++|.|.++++ ++++|||+||||++.+|+ ++.+++|||+ ||+|||
T Consensus 216 --~nt~n~~~~l~~L~~~~~~~~~~lp~h~~~K~v~p~----~~~~qlE~~i~da~~~~~---~~~~~eV~R~-rF~PvK 285 (300)
T cd00897 216 --FNTNNLWVNLKAVKRVVEENALDLEIIVNPKTVDGG----LNVIQLETAVGAAIKNFD---NALGVNVPRS-RFLPVK 285 (300)
T ss_pred --EEEeEEEEEHHHHHHHHHhccCCCCeeecccccCCC----CCEEEeHhHhhhHHHhCC---CcEEEEEChh-hcCCCC
Confidence 499999999999998887655669999999987643 479999999999988873 3456699995 899999
Q ss_pred CCCcc
Q 007115 456 NNPED 460 (617)
Q Consensus 456 N~~~~ 460 (617)
|++|+
T Consensus 286 n~~dl 290 (300)
T cd00897 286 TTSDL 290 (300)
T ss_pred ChHHH
Confidence 99996
No 11
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-69 Score=578.04 Aligned_cols=441 Identities=20% Similarity=0.263 Sum_probs=355.2
Q ss_pred hhHHHHHHHHHHCCCcccccccccCCCCHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHhh-ccCCCCCCCCCCCCCC
Q 007115 37 SEQVELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLAD-SKAGKNPFDGFTPSVP 115 (617)
Q Consensus 37 ~~~~~l~~~L~~~gQ~HL~~~~~~l~~~~~e~~~L~~qL~~id~~~~~~l~~~~~~~~~~l~~-s~~~~~~~~~~~p~vp 115 (617)
.+.......+.+..|.|+|+.|...+ +.+..+..+++..+|. ++...++++.+ +......|+.+.|+.|
T Consensus 13 ~~f~~~~~~l~~~~~~h~l~~l~~~s--~~~~~~~~~~~~~~d~--------~f~l~~~~ll~~s~~s~~~~~ki~~~~~ 82 (472)
T COG4284 13 FKFNSDAVSLAASQQEHLLDKLKQSS--EKQALKSFEKLLLLDI--------FFFLFSRYLLNTSKASTQEWDKIRPPNP 82 (472)
T ss_pred hhhhcchhhhhHHHHHHHHHHhhhhc--hHHHHhhhhhhhhhHH--------HHHHHHHHHhhcCcccceeecccCCCCh
Confidence 34556788899999999999998853 4455566677666664 45666666654 3344677898887544
Q ss_pred CcccccCCChhhhHHHHHhHHh--hcceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhcc
Q 007115 116 TGEVLKFGDDTFINYEQAGVKE--AKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAE 193 (617)
Q Consensus 116 ~~~~l~~~~~~~~~~~~~G~~~--l~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~ 193 (617)
+ ....|++...+.| |+.. ++|+|||+|||||||||||++||++++|+ +|+||||+++|||+.++++|+
T Consensus 83 d-~~~~~~~~~~~~~---~l~~~~~~klAvl~LaGGqGtrlG~~gPKgl~~V~--~gks~~dl~~~qIk~ln~~~~---- 152 (472)
T COG4284 83 D-DVVDYEKKILEGW---GLLKIKLGKLAVLKLAGGQGTRLGCDGPKGLFEVK--DGKSLFDLQAEQIKYLNRQYN---- 152 (472)
T ss_pred h-hhccchhhccchh---hhhhhhcCceEEEEecCCcccccccCCCceeEEec--CCCcHHHHHHHHHHHHHHHhC----
Confidence 3 4445543332222 4444 67999999999999999999999999998 899999999999999999997
Q ss_pred CCcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhh
Q 007115 194 GKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLY 273 (617)
Q Consensus 194 g~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~ 273 (617)
++|||||||| .|++.|..||+.++|||+++++|+||+|+.+||+.+.+|++++...+.. ++|+|+||||+|.+|+
T Consensus 153 ---~~vP~~iMtS-~nt~~t~s~f~~~~Y~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~-~~~~P~GnG~lf~aL~ 227 (472)
T COG4284 153 ---VDVPLYIMTS-LNTEETDSYFKSNDYFGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSN-LAWYPPGNGDLFKALK 227 (472)
T ss_pred ---CCCCEEEEec-CCcHHHHHHHhhhhhcCCCHHHeEEEecCCcceeecccCccccccCCcc-cccCCCCCccHHHHHH
Confidence 5999999999 9999999999999999999999999999999977778999998433322 9999999999999999
Q ss_pred hcChhHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCceeEEeeeC-CcccccceEEEEecCCCceeEEEEeecC
Q 007115 274 SSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHADGRSMVINVEYNQ 352 (617)
Q Consensus 274 ~sG~ld~l~~~G~eyi~v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r-~~~E~vG~i~~~~~~dG~~~v~nVEYse 352 (617)
.||++++|.++|+||++|+|||| |++++||.|+|+++.++++++||+|.| ++.|++|.++.. ||+.++ +||+|
T Consensus 228 ~SG~le~l~~~G~e~lfV~nIDN-L~~~vD~~~lg~~~~~~~e~~~e~t~Kt~a~ekvG~Lv~~---~g~~rl--lEyse 301 (472)
T COG4284 228 SSGILEKLIAQGIEYLFVSNIDN-LGATVDLKFLGFMAETNYEYLMETTDKTKADEKVGILVTY---DGKLRL--LEYSE 301 (472)
T ss_pred hcchHHHHHhcCceEEEEecccc-cccccCHHHHHHHHhcCcceeEEEeecccccccceEEEEe---CCceEE--EEEec
Confidence 99999999999999999999999 999999999999999999999999997 477888877644 999777 99999
Q ss_pred CCHHHhhcCCCCCCCccCCCCCCCccceeeeeeehhhhHHHHhhcCCccccccCCcccCCCC-------CcccCcchhhh
Q 007115 353 LDPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASK-------TSFKSSTRLEC 425 (617)
Q Consensus 353 l~~~l~~~~~~~g~l~~~~gf~~f~gNinn~~~~L~~~~~~l~~~~~~l~~~vnpk~~d~~~-------~~~~~~~kLE~ 425 (617)
++...+.+...++. +.+| |+||+|+.+..+..+.+.....||++.+-|.....+ ..-+...++|.
T Consensus 302 v~~~~~~~~~s~~~------~~~~--n~Nni~l~~~~~~~l~~~~~l~Lpi~~a~Kki~~~~~~~~~~t~i~~~i~kfe~ 373 (472)
T COG4284 302 VPNEHREEFTSDGK------LKYF--NTNNIWLHLFSVKFLKEAAYLNLPIHKAIKKIPQLDNIIQLTTAIGKNISKFEN 373 (472)
T ss_pred CChhHhhhhccccc------eeee--ccccceeehhHHHHHHhhhccCCcchhhhcccCccccceeeccccccchhhccc
Confidence 99876655544343 4566 888888888777777766566788887765432221 11234568995
Q ss_pred -hh-cccccCCCCCCceeEEEecCCceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHhhccccccccccCC
Q 007115 426 -MM-QDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKVTRVSLSYCKNYS 503 (617)
Q Consensus 426 -~m-~D~~~~f~~~~~~g~~~V~R~~~FsPvKN~~~~~~~~~~g~~~dsp~t~~~dl~~~~~~~L~~~~~~~~~y~~~~~ 503 (617)
|| +|.+.+- ..++.++..|||..||+|+||-.+.-
T Consensus 374 ~FI~fDlF~~~-s~~~~~~~~vpR~~~f~Plkn~~~~~------------------------------------------ 410 (472)
T COG4284 374 EFIPFDLFLYK-SDENGGLLLVPRFGEFSPLKNLEGSH------------------------------------------ 410 (472)
T ss_pred cccceeeeEEE-ecCCCceEeccccCCCCchhhccCCC------------------------------------------
Confidence 99 9974442 12677888999999999999988631
Q ss_pred chhHHHhhhhccccCeeecCccccccCCeeecCCCeEEEcCCCCCCHHHHHhhcCCCCCCCCCceEEEEeceEEeeCeEE
Q 007115 504 SELFWFLILSTCQAGAQVDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEIKNKVSGSCSVSQKSTMVIKGRNVVLEDLSL 583 (617)
Q Consensus 504 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~P~i~l~p~f~~~~~~~~~r~~~~~~i~~~s~L~v~g~~~~~~~v~l 583 (617)
| .+++.+..+++..|.|.+..+++|+|++.|++|+++
T Consensus 411 ------------------------------------------~-~~~~~~~~~~~~~~~~~e~~~~~is~nv~~~~~~~l 447 (472)
T COG4284 411 ------------------------------------------F-DNVETFTCGIPRIPLILELEGLTISGNVLFGRNVTL 447 (472)
T ss_pred ------------------------------------------C-CcHHhhhcccccccchhhhccceecCceEeeeccee
Confidence 1 245556667777788999999999999999999999
Q ss_pred EEEEEEEcCCCCeEEecCCeEEeC
Q 007115 584 NGALIIDSVDDAEVCYIMPILRYG 607 (617)
Q Consensus 584 ~G~v~I~a~~~~~~~i~~~~~~~~ 607 (617)
+ .+....+++||++++..+
T Consensus 448 k-----~~~e~~~l~~~~~s~~e~ 466 (472)
T COG4284 448 K-----YASENTSLCIPNKSFLEN 466 (472)
T ss_pred e-----ecCCCceEeccCCeeeee
Confidence 9 888899999999988764
No 12
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=100.00 E-value=3.7e-62 Score=502.86 Aligned_cols=266 Identities=31% Similarity=0.390 Sum_probs=233.0
Q ss_pred eEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhC
Q 007115 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 220 (617)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~ 220 (617)
+|+|+||||+|||||++.||+++|+.+++++||||++++||++++.++.+ ...|||+||||++||+.|++||++|
T Consensus 1 va~viLaGG~GtRLg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~-----~~~Ip~~imts~~t~~~t~~~l~~~ 75 (266)
T cd04180 1 VAVVLLAGGLGTRLGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLY-----SCKIPEQLMNSKYTHEKTQCYFEKI 75 (266)
T ss_pred CEEEEECCCCccccCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhc-----CCCCCEEEEcCchhHHHHHHHHHHc
Confidence 69999999999999999999999999999999999999999999998841 1489999999999999999999999
Q ss_pred CCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCcccc
Q 007115 221 SYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLF 300 (617)
Q Consensus 221 ~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~~ 300 (617)
+ +++++|++|+|+++||++. +|...+ ++++++.|+|+||||+|.+|..+|+|++|+++|++|++|+|+||+|+.
T Consensus 76 ~---~~~~~v~~f~Q~~~P~~~~-~~~~~~--~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~ 149 (266)
T cd04180 76 N---QKNSYVITFMQGKLPLKND-DDARDP--HNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVK 149 (266)
T ss_pred C---CCCCceEEEEeCCceEEeC-CCCccc--CCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCcc
Confidence 8 5789999999999999975 666666 667789999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCccce
Q 007115 301 KAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNI 380 (617)
Q Consensus 301 ~~DP~~lG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gNi 380 (617)
++||.++||++.++++++++||+|++.|.+||++..+ .+|+..+ |||+|++++++..+.++++..+..++++++|||
T Consensus 150 v~DP~~lG~~~~~~~~~~~kvv~K~~~d~k~G~~~~~-~~g~~~~--vEyse~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 226 (266)
T cd04180 150 VADPLFIGIAIQNRKAINQKVVPKTRNEESGGYRIAN-INGRVQL--LEYDQIKKLLKQKMVNNQIPKDIDDAPFFLFNT 226 (266)
T ss_pred ccCHHHHHHHHHcCCCEEEEEEECCCCCCeEEEEEEe-cCCCEEE--EEeccCCHHHHhccccccCcCCCCceeeccceE
Confidence 9999999999999999999999998665555544331 1388776 999999999998887777666545588999999
Q ss_pred eeeeeehhhhHHHHhhcCCccccccCCcccCCCCCcccCcchhhhhhcccccCCCCCCceeEEEecCCceeecccC
Q 007115 381 NQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKN 456 (617)
Q Consensus 381 nn~~~~L~~~~~~l~~~~~~l~~~vnpk~~d~~~~~~~~~~kLE~~m~D~~~~f~~~~~~g~~~V~R~~~FsPvKN 456 (617)
|||||+|++|+++++ |++.+| .++..++|+|++||+||||
T Consensus 227 ~~~~~~l~~l~~~~~---------------------------------d~~~~~---~~~~~~~v~r~~~F~PvKn 266 (266)
T cd04180 227 NNLINFLVEFKDRVD---------------------------------DIIEFT---DDIVGVMVHRAEEFAPVKN 266 (266)
T ss_pred EEEEEEHHHHHHHHH---------------------------------HHHhcc---CceEEEEeCchhccccCCC
Confidence 999999999887774 555555 3345569999889999998
No 13
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=98.28 E-value=8.5e-05 Score=80.60 Aligned_cols=274 Identities=18% Similarity=0.192 Sum_probs=164.0
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
.+.+|+||-|+||||.++.||.+-|+. |++.++..++....+.- ..+- ..=..-.+..++.+.+
T Consensus 2 ~~~~vILAAGkGTRMkS~lPKVLH~va---GkpMl~hVi~~a~~l~~----------~~i~---vVvGh~ae~V~~~~~~ 65 (460)
T COG1207 2 SLSAVILAAGKGTRMKSDLPKVLHPVA---GKPMLEHVIDAARALGP----------DDIV---VVVGHGAEQVREALAE 65 (460)
T ss_pred CceEEEEecCCCccccCCCcccchhcc---CccHHHHHHHHHhhcCc----------ceEE---EEEcCCHHHHHHHhcc
Confidence 467899999999999999999999995 99999999988876521 1222 2234556677777765
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCce-EEEEEeCCCcc
Q 007115 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLK-WVLFFQDTNGL 298 (617)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~e-yi~v~~vDN~L 298 (617)
.. ++.|+.|.. | + -+|+-++ +. ...+.++++ .+.|.+=|=+|
T Consensus 66 ~~-------~v~~v~Q~e-q-l--GTgHAV~--------------------~a------~~~l~~~~~g~vLVl~GD~PL 108 (460)
T COG1207 66 RD-------DVEFVLQEE-Q-L--GTGHAVL--------------------QA------LPALADDYDGDVLVLYGDVPL 108 (460)
T ss_pred cc-------CceEEEecc-c-C--ChHHHHH--------------------hh------hhhhhcCCCCcEEEEeCCccc
Confidence 32 466777755 1 2 1333222 11 123444555 56677777777
Q ss_pred ccccch-HHHHHHhhcCCceeEEeeeC-CcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCC
Q 007115 299 LFKAIP-ASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPF 376 (617)
Q Consensus 299 ~~~~DP-~~lG~~~~~~~d~~~kvv~r-~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f 376 (617)
...--. .++.++...+......++.- .|. --|-+++ +.+|+.. ..||..+-+++-+. + +.+
T Consensus 109 it~~TL~~L~~~~~~~~~~~tvLt~~~~dP~-GYGRIvr--~~~g~V~-~IVE~KDA~~eek~-------I------~ei 171 (460)
T COG1207 109 ITAETLEELLAAHPAHGAAATVLTAELDDPT-GYGRIVR--DGNGEVT-AIVEEKDASEEEKQ-------I------KEI 171 (460)
T ss_pred CCHHHHHHHHHhhhhcCCceEEEEEEcCCCC-CcceEEE--cCCCcEE-EEEEcCCCCHHHhc-------C------cEE
Confidence 653222 47777777778777666653 333 2354543 4455532 23998777655321 1 123
Q ss_pred ccceeeeeeehhhhHHHHhhcCCccccccCCcccCCCCCcccCcchhhhhhcccccCCCC-CCceeEEEecCCceeeccc
Q 007115 377 PGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPP-SAKVGFTVMDTWLAYAPVK 455 (617)
Q Consensus 377 ~gNinn~~~~L~~~~~~l~~~~~~l~~~vnpk~~d~~~~~~~~~~kLE~~m~D~~~~f~~-~~~~g~~~V~R~~~FsPvK 455 (617)
|+..+.|+-+.+.+.|.+ +-|- ..|=|--+-|++..+.. ..++..+.++..+|+.-|-
T Consensus 172 --NtGiy~f~~~~L~~~L~~-------l~nn------------NaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN 230 (460)
T COG1207 172 --NTGIYAFDGAALLRALPK-------LSNN------------NAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVN 230 (460)
T ss_pred --eeeEEEEcHHHHHHHHHH-------hccc------------cccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcC
Confidence 999999999888888764 1110 11334444454444422 2355566777778888886
Q ss_pred CCCcccccCCCCCCCCChhhHHHHHH-HHHHHHHHhhccccccccccCCchhHHHhhhhccccCeeecCccccccCCeee
Q 007115 456 NNPEDAAKVPKGNPYHSATSGEMAIY-CANSLILRKVTRVSLSYCKNYSSELFWFLILSTCQAGAQVDDPVQEVFNGQEV 534 (617)
Q Consensus 456 N~~~~~~~~~~g~~~dsp~t~~~dl~-~~~~~~L~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 534 (617)
|.-.++ .+++-+- +..+.|+++ |+++.+|++..+ .-.+
T Consensus 231 ~R~qLa-------------~~e~~~q~r~~~~~m~~---------------------------GVtl~dP~t~~i-~~dv 269 (460)
T COG1207 231 DRVQLA-------------EAERIMQRRIAEKLMLA---------------------------GVTLIDPATTYI-RGDV 269 (460)
T ss_pred cHHHHH-------------HHHHHHHHHHHHHHHHc---------------------------CcEEeCCCeEEE-cCcE
Confidence 655543 3343333 235556655 999988886322 2234
Q ss_pred cCCCeEEEcCC
Q 007115 535 EVWPRLTWKPK 545 (617)
Q Consensus 535 ~~~P~i~l~p~ 545 (617)
..++-++++|.
T Consensus 270 ~ig~DvvI~p~ 280 (460)
T COG1207 270 EIGRDVVIEPN 280 (460)
T ss_pred EECCceEEecC
Confidence 55555666655
No 14
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.13 E-value=0.00099 Score=73.14 Aligned_cols=178 Identities=15% Similarity=0.134 Sum_probs=105.4
Q ss_pred eEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhC
Q 007115 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 220 (617)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~ 220 (617)
+.+|+||||.||||+...||.++|+. |++++++.+++++.. . -..+|+++. ..+.+.++++++
T Consensus 3 ~~aiIlAaG~GtRl~~~~pK~Llpi~---gkPli~~~i~~l~~~----~---------~~i~Ivv~~-~~~~i~~~~~~~ 65 (430)
T PRK14359 3 LSIIILAAGKGTRMKSSLPKVLHTIC---GKPMLFYILKEAFAI----S---------DDVHVVLHH-QKERIKEAVLEY 65 (430)
T ss_pred ccEEEEcCCCCccCCCCCCceeCEEC---CccHHHHHHHHHHHc----C---------CcEEEEECC-CHHHHHHHHHhc
Confidence 56899999999999988999999995 999999999988753 1 135666654 467788888753
Q ss_pred CCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCcccc
Q 007115 221 SYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLF 300 (617)
Q Consensus 221 ~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~~ 300 (617)
++ .+.+..|+ ...+.|.|+....+. ..-+++.+.+-|+++.
T Consensus 66 --~~----~v~~~~~~----------------------~~~~~gt~~al~~~~----------~~~d~vlv~~gD~p~~- 106 (430)
T PRK14359 66 --FP----GVIFHTQD----------------------LENYPGTGGALMGIE----------PKHERVLILNGDMPLV- 106 (430)
T ss_pred --CC----ceEEEEec----------------------CccCCCcHHHHhhcc----------cCCCeEEEEECCccCC-
Confidence 11 23332221 012335554433211 1247888999999763
Q ss_pred ccchHHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCccce
Q 007115 301 KAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNI 380 (617)
Q Consensus 301 ~~DP~~lG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gNi 380 (617)
++..+-.+.+.+.++.+-+++.......|.+.. .+|+.. ..+|..... .++.. .+..|+
T Consensus 107 --~~~~l~~l~~~~~~~~v~~~~~~~~~~~g~v~~---d~g~v~-~i~e~~~~~---------~~~~~------~~~~~~ 165 (430)
T PRK14359 107 --EKDELEKLLENDADIVMSVFHLADPKGYGRVVI---ENGQVK-KIVEQKDAN---------EEELK------IKSVNA 165 (430)
T ss_pred --CHHHHHHHHhCCCCEEEEEEEcCCCccCcEEEE---cCCeEE-EEEECCCCC---------ccccc------ceEEEe
Confidence 556666666777776665555322223565332 355431 113332110 00110 112488
Q ss_pred eeeeeehhhhHHHHh
Q 007115 381 NQLILELGPYMEELK 395 (617)
Q Consensus 381 nn~~~~L~~~~~~l~ 395 (617)
..++|+-+.+.+.+.
T Consensus 166 Giyif~~~~l~~~~~ 180 (430)
T PRK14359 166 GVYLFDRKLLEEYLP 180 (430)
T ss_pred EEEEEEHHHHHHHHH
Confidence 888899876655543
No 15
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.09 E-value=0.00036 Score=77.28 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=37.2
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHH
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~ 183 (617)
.+.+|+||||.||||+.+.||.++|+. |++++++.++.+.+
T Consensus 5 ~~~aiILAaG~gtR~~~~~pK~l~~i~---gkpli~~~l~~l~~ 45 (456)
T PRK14356 5 TTGALILAAGKGTRMHSDKPKVLQTLL---GEPMLRFVYRALRP 45 (456)
T ss_pred ceeEEEEcCCCCccCCCCCCceecccC---CCcHHHHHHHHHHh
Confidence 578899999999999988999999995 99999999998753
No 16
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=98.07 E-value=0.00013 Score=76.83 Aligned_cols=182 Identities=17% Similarity=0.193 Sum_probs=109.3
Q ss_pred ceEEEEEcCCcCCcCCc---cCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 007115 140 NAAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~---~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~ 216 (617)
.+-.|+||||.||||.- ..||.++|+. +|+++++.++.+... + .--++|++...-.+..+++
T Consensus 3 ~~kaIILAgG~GtRL~PlT~~~pK~Llpv~---gkPmI~~~l~~l~~a----G--------i~~I~ii~~~~~~~~~~~~ 67 (292)
T PRK15480 3 TRKGIILAGGSGTRLYPVTMAVSKQLLPIY---DKPMIYYPLSTLMLA----G--------IRDILIISTPQDTPRFQQL 67 (292)
T ss_pred ceEEEEECCCcccccCcccCCCCceEeEEC---CEEHHHHHHHHHHHC----C--------CCEEEEEecCCchHHHHHH
Confidence 46789999999999975 8899999996 999999999888643 2 1235556666656678888
Q ss_pred HHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCC
Q 007115 217 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (617)
Q Consensus 217 l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN 296 (617)
|.....||++ +.+..| -.|.|.|+-+.... +++. +-+++ +..-||
T Consensus 68 l~~g~~~g~~---i~y~~q------------------------~~~~Gta~Al~~a~------~~i~-~~~~~-lv~gD~ 112 (292)
T PRK15480 68 LGDGSQWGLN---LQYKVQ------------------------PSPDGLAQAFIIGE------EFIG-GDDCA-LVLGDN 112 (292)
T ss_pred HcCccccCce---eEEEEC------------------------CCCCCHHHHHHHHH------HHhC-CCCEE-EEECCe
Confidence 8776666653 222111 12667777655432 2332 22444 556888
Q ss_pred ccccccchHHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCC
Q 007115 297 GLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPF 376 (617)
Q Consensus 297 ~L~~~~DP~~lG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f 376 (617)
++...--..++-.+..++.++.+-+++....++-|++.. +.+|+ + +++.|.+. .|. +.
T Consensus 113 i~~~~~l~~ll~~~~~~~~~~tv~~~~v~~p~~yGvv~~--d~~g~--v--~~i~EKP~------~p~---------s~- 170 (292)
T PRK15480 113 IFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEF--DQNGT--A--ISLEEKPL------QPK---------SN- 170 (292)
T ss_pred eeeccCHHHHHHHHHhCCCCeEEEEEEcCCcccCcEEEE--CCCCc--E--EEEEECCC------CCC---------CC-
Confidence 663222245677776767776655554333356787543 33454 2 33333321 111 11
Q ss_pred ccceeeeeeehhhhHHHH
Q 007115 377 PGNINQLILELGPYMEEL 394 (617)
Q Consensus 377 ~gNinn~~~~L~~~~~~l 394 (617)
..|+..++|+-+ +.+.+
T Consensus 171 ~a~~GiY~~~~~-v~~~~ 187 (292)
T PRK15480 171 YAVTGLYFYDND-VVEMA 187 (292)
T ss_pred EEEEEEEEEChH-HHHHH
Confidence 248999999875 43344
No 17
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.97 E-value=0.00029 Score=76.31 Aligned_cols=197 Identities=16% Similarity=0.145 Sum_probs=111.1
Q ss_pred cceEEEEEcCCcCCcCCc---cCCcccCCcccCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHH
Q 007115 139 KNAAFVLVAGGLGERLGY---NGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQ 214 (617)
Q Consensus 139 ~kvavvlLaGGlGTRLG~---~~pK~~lpv~~~~gk-s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~ 214 (617)
+++-+|+||||.||||.- +.||.++|+. |+ +++++.++.+... + ---++|.|. +..+.+.
T Consensus 2 ~~m~avILAaG~GtRl~plT~~~PK~llpv~---gk~pli~~~l~~l~~~----G--------i~~i~iv~~-~~~~~i~ 65 (380)
T PRK05293 2 KEMLAMILAGGQGTRLGKLTKNIAKPAVPFG---GKYRIIDFTLSNCANS----G--------IDTVGVLTQ-YQPLELN 65 (380)
T ss_pred CcEEEEEECCCCCcccchhhcCCccceeeeC---CceeehhHHHHHHHhC----C--------CCEEEEEec-CCHHHHH
Confidence 367899999999999986 8899999995 88 8999999988643 2 113556664 5678899
Q ss_pred HHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchh-hHhhhhcChhHHHHHcCceEEEEEe
Q 007115 215 ELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDV-HALLYSSGLLKEWHDAGLKWVLFFQ 293 (617)
Q Consensus 215 ~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi-~~aL~~sG~ld~l~~~G~eyi~v~~ 293 (617)
++|.+...||+...+ ..+..+ . +.. ... ..-.|-|.|+- +.++. .+....-+++.|.+
T Consensus 66 ~~~~~~~~~~~~~~~------~~~~i~-~----~~~--~~~--~~~~~~Gta~al~~a~~------~l~~~~~~~~lV~~ 124 (380)
T PRK05293 66 NHIGIGSPWDLDRIN------GGVTIL-P----PYS--ESE--GGKWYKGTAHAIYQNID------YIDQYDPEYVLILS 124 (380)
T ss_pred HHHhCCCcccccCCC------CCEEEe-C----Ccc--cCC--CCcccCCcHHHHHHHHH------HHHhCCCCEEEEec
Confidence 999876666654221 111111 0 000 000 00123566553 33332 23222336788888
Q ss_pred CCCccccccchHHHHHHhhcCCceeEEeeeC--CcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCC
Q 007115 294 DTNGLLFKAIPASLGVSATKQYHVNSLAVPR--KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCET 371 (617)
Q Consensus 294 vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r--~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~ 371 (617)
-|++..... -.++-.+..+++++.+-+... ....+.|++.. +.+|+ | .++.|.+. .+.
T Consensus 125 gD~l~~~d~-~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~--d~~g~--V--~~~~eKp~------~~~------- 184 (380)
T PRK05293 125 GDHIYKMDY-DKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNT--DENMR--I--VEFEEKPK------NPK------- 184 (380)
T ss_pred CCEEEcCCH-HHHHHHHHhcCCCEEEEEEEcchhhccccCEEEE--CCCCc--E--EEEEeCCC------CCC-------
Confidence 998432221 345666677777754443221 12234565532 23443 3 34444321 110
Q ss_pred CCCCCccceeeeeeehhhhHHHHh
Q 007115 372 GYSPFPGNINQLILELGPYMEELK 395 (617)
Q Consensus 372 gf~~f~gNinn~~~~L~~~~~~l~ 395 (617)
+. ..|+..+.|+-+.+.+.++
T Consensus 185 --~~-~~~~Giyi~~~~~l~~~l~ 205 (380)
T PRK05293 185 --SN-LASMGIYIFNWKRLKEYLI 205 (380)
T ss_pred --cc-eeeeEEEEEcHHHHHHHHH
Confidence 01 2488899999876655554
No 18
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.94 E-value=0.00028 Score=77.52 Aligned_cols=205 Identities=13% Similarity=0.138 Sum_probs=114.1
Q ss_pred hhcceEEEEEcCCcCCcCC---ccCCcccCCcccCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHH
Q 007115 137 EAKNAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSR 212 (617)
Q Consensus 137 ~l~kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~gk-s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~ 212 (617)
+..++.+|+||||.||||. .+.||.++|+. |+ +++++.++.+... .+-=+++...+..+.
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~---gk~plI~~~L~~l~~~-------------Gi~~i~iv~~~~~~~ 65 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFG---GSYRLIDFVLSNLVNS-------------GYLRIYVLTQYKSHS 65 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeC---CcceEhHHHHHHHHHC-------------CCCEEEEEeccCHHH
Confidence 3468899999999999998 79999999996 87 9999998888643 233334444567888
Q ss_pred HHHHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEE
Q 007115 213 TQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFF 292 (617)
Q Consensus 213 T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~ 292 (617)
+.++|.+. +++....+.++.. .|.- ... -.-.|-|.|+-.... ++.+....-+++.+.
T Consensus 66 i~~~~~~~--~~~~~~~~~~~~~--~~~~-----------~~~--~~~~~lGta~al~~a-----~~~i~~~~~~~~lv~ 123 (407)
T PRK00844 66 LDRHISQT--WRLSGLLGNYITP--VPAQ-----------QRL--GKRWYLGSADAIYQS-----LNLIEDEDPDYVVVF 123 (407)
T ss_pred HHHHHHhC--cCccccCCCeEEE--CCcc-----------cCC--CCCcccCCHHHHHHH-----HHHHHhcCCCEEEEe
Confidence 99999742 2222111111100 0100 000 011356776654332 222333344788888
Q ss_pred eCCCccccccc-hHHHHHHhhcCCceeEEeee--CCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCcc
Q 007115 293 QDTNGLLFKAI-PASLGVSATKQYHVNSLAVP--RKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNC 369 (617)
Q Consensus 293 ~vDN~L~~~~D-P~~lG~~~~~~~d~~~kvv~--r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~ 369 (617)
+-|++ . ..| -.++-++..+++++.+-+.. ......-|++.. +.+|+. .++.|.+...... ...
T Consensus 124 ~gD~v-~-~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv~~--d~~g~v----~~~~eKp~~~~~~------~~~ 189 (407)
T PRK00844 124 GADHV-Y-RMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEV--DPDGRI----RGFLEKPADPPGL------PDD 189 (407)
T ss_pred cCCEE-E-cCCHHHHHHHHHhcCCcEEEEEEecchHHcccCCEEEE--CCCCCE----EEEEECCCCcccc------cCC
Confidence 88984 3 233 34577777788876554432 222334565532 334542 3443332211000 000
Q ss_pred CCCCCCCccceeeeeeehhhhHHHHhh
Q 007115 370 ETGYSPFPGNINQLILELGPYMEELKK 396 (617)
Q Consensus 370 ~~gf~~f~gNinn~~~~L~~~~~~l~~ 396 (617)
.+. ...|+..+.|+-+.+.+.|++
T Consensus 190 -~~~--~~~~~Giyi~~~~~l~~~l~~ 213 (407)
T PRK00844 190 -PDE--ALASMGNYVFTTDALVDALRR 213 (407)
T ss_pred -CCC--cEEEeEEEEEeHHHHHHHHHH
Confidence 001 124888899998766565643
No 19
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=97.93 E-value=0.00024 Score=74.67 Aligned_cols=178 Identities=17% Similarity=0.158 Sum_probs=106.3
Q ss_pred EEEEcCCcCCcCCc---cCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 143 vvlLaGGlGTRLG~---~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
.|+||||.||||.- ..||.++|+. +++++++.++.+... + .-.++|.+.....+..+++|..
T Consensus 2 aIILAgG~GtRL~plT~~~pK~Llpv~---gkPmI~~~L~~l~~a----G--------i~~I~iv~~~~~~~~~~~~lg~ 66 (286)
T TIGR01207 2 GIILAGGSGTRLYPITRAVSKQLLPIY---DKPMIYYPLSTLMLA----G--------IRDILIISTPQDTPRFQQLLGD 66 (286)
T ss_pred EEEECCCCCccCCcccCCCCceeeEEC---CEEhHHHHHHHHHHC----C--------CCEEEEEecCCcHHHHHHHhcc
Confidence 58899999999964 8999999995 999999999888642 2 1245567767777788888877
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 007115 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (617)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~ 299 (617)
...||++ +.+..| ..|-|-|+-+..... ++.. =.++ +..-||++.
T Consensus 67 g~~~g~~---i~~~~q------------------------~~~~Gta~al~~a~~------~l~~-~~~~-li~gD~i~~ 111 (286)
T TIGR01207 67 GSQWGVN---LSYAVQ------------------------PSPDGLAQAFIIGED------FIGG-DPSA-LVLGDNIFY 111 (286)
T ss_pred ccccCce---EEEEEc------------------------cCCCCHHHHHHHHHH------HhCC-CCEE-EEECCEecc
Confidence 6666653 322212 135566665443221 2222 2344 557898763
Q ss_pred cccc-hHHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCcc
Q 007115 300 FKAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPG 378 (617)
Q Consensus 300 ~~~D-P~~lG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~g 378 (617)
. .| ..++-.+.+.+.++.+-+.+....++-|++.. +.+|+ | ++..|.+. .|. +. ..
T Consensus 112 ~-~~l~~ll~~~~~~~~~~ti~~~~v~~p~~yGvv~~--d~~g~--V--~~i~EKp~------~~~---------s~-~~ 168 (286)
T TIGR01207 112 G-HDLSDLLKRAAARESGATVFAYQVSDPERYGVVEF--DSNGR--A--ISIEEKPA------QPK---------SN-YA 168 (286)
T ss_pred c-cCHHHHHHHHHhcCCCcEEEEEEccCHHHCceEEE--CCCCe--E--EEEEECCC------CCC---------CC-EE
Confidence 2 33 34566666677776655555333356676643 33454 2 33333321 110 11 24
Q ss_pred ceeeeeeehhhhHHHH
Q 007115 379 NINQLILELGPYMEEL 394 (617)
Q Consensus 379 Ninn~~~~L~~~~~~l 394 (617)
|+...+|+-+ +.+.+
T Consensus 169 ~~GiYi~~~~-i~~~l 183 (286)
T TIGR01207 169 VTGLYFYDNR-VVEIA 183 (286)
T ss_pred EEEEEEEchH-HHHHH
Confidence 8889999875 44444
No 20
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=97.92 E-value=0.00027 Score=70.64 Aligned_cols=134 Identities=13% Similarity=0.098 Sum_probs=84.1
Q ss_pred EEEEcCCcCCcCC---ccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
+|+||||.||||+ ...||.++|+. |++++++.++.+.+. + ---++|.|.. ..+.+.++|++
T Consensus 3 aiIla~G~g~Rl~plt~~~pK~llpi~---g~piI~~~l~~l~~~----G--------i~~I~iv~~~-~~~~i~~~l~~ 66 (217)
T cd04197 3 AVVLADSFNRRFRPLTKEKPRCLLPLA---NVPLIDYTLEFLALN----G--------VEEVFVFCCS-HSDQIKEYIEK 66 (217)
T ss_pred EEEEcCCCcccccccccCCCceeeEEC---CEehHHHHHHHHHHC----C--------CCeEEEEeCC-CHHHHHHHHhh
Confidence 6899999999998 58999999996 999999999888653 2 1235667764 67889999998
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 007115 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (617)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~ 299 (617)
..++++... ...+..+ . . ..+.|-|+.+..+...+.+ .+.+.+.+-|++.
T Consensus 67 ~~~~~~~~~------~~~i~~~--------~--~------~~~~~~~~al~~~~~~~~~-------~~~flv~~gD~i~- 116 (217)
T cd04197 67 SKWSKPKSS------LMIVIII--------M--S------EDCRSLGDALRDLDAKGLI-------RGDFILVSGDVVS- 116 (217)
T ss_pred ccccccccC------cceEEEE--------e--C------CCcCccchHHHHHhhcccc-------CCCEEEEeCCeee-
Confidence 766554311 0011111 1 0 0134556666555443322 2345577888853
Q ss_pred cccch-HHHHHHhh-----cCCceeEEeee
Q 007115 300 FKAIP-ASLGVSAT-----KQYHVNSLAVP 323 (617)
Q Consensus 300 ~~~DP-~~lG~~~~-----~~~d~~~kvv~ 323 (617)
..|. .++.++.+ +++++.+-+.+
T Consensus 117 -~~dl~~~l~~h~~~~~~~~~a~~t~~~~~ 145 (217)
T cd04197 117 -NIDLKEILEEHKERRKKDKNAIMTMVLKE 145 (217)
T ss_pred -ccCHHHHHHHHHHhhccccCceEEEEEEe
Confidence 3342 35777776 36766654444
No 21
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=97.79 E-value=0.0015 Score=65.14 Aligned_cols=180 Identities=19% Similarity=0.177 Sum_probs=100.8
Q ss_pred EEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCCC
Q 007115 143 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSY 222 (617)
Q Consensus 143 vvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~~~ 222 (617)
+|+||||.||||+...||.++|+. |++++++.++.+... + .-.++|.++.. ++.+.+++.+
T Consensus 1 aiIlaaG~g~R~~~~~pK~l~~v~---gkpli~~~i~~l~~~----~--------i~~i~iv~~~~-~~~i~~~~~~--- 61 (229)
T cd02540 1 AVILAAGKGTRMKSDLPKVLHPLA---GKPMLEHVLDAARAL----G--------PDRIVVVVGHG-AEQVKKALAN--- 61 (229)
T ss_pred CEEEeCCCCccCCCCCChhcceeC---CccHHHHHHHHHHhC----C--------CCeEEEEECCC-HHHHHHHhCC---
Confidence 478999999999977899999995 999999988887642 1 22456666654 6777777764
Q ss_pred CCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCch-hhHhhhhcChhHHHHHcCceEEEEEeCCCccccc
Q 007115 223 FGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD-VHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFK 301 (617)
Q Consensus 223 FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGd-i~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~~~ 301 (617)
++ +.++.|. .+.|.++ ++.++. .+ .++.+++.+.+-|+++...
T Consensus 62 ~~-----~~~~~~~------------------------~~~g~~~ai~~a~~------~~-~~~~~~vli~~~D~p~~~~ 105 (229)
T cd02540 62 PN-----VEFVLQE------------------------EQLGTGHAVKQALP------AL-KDFEGDVLVLYGDVPLITP 105 (229)
T ss_pred CC-----cEEEECC------------------------CCCCCHHHHHHHHH------hh-ccCCCeEEEEeCCccccCH
Confidence 11 2222110 0234343 333332 22 2246789999999975432
Q ss_pred cch-HHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCccce
Q 007115 302 AIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNI 380 (617)
Q Consensus 302 ~DP-~~lG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gNi 380 (617)
-+. .++-.+.+.++++++-+++.......|.+.. +.+|+.. ..+|...+.+. + . .. ...|+
T Consensus 106 ~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~v~-~~~ek~~~~~~----~----~------~~-~~~~~ 167 (229)
T cd02540 106 ETLQRLLEAHREAGADVTVLTAELEDPTGYGRIIR--DGNGKVL-RIVEEKDATEE----E----K------AI-REVNA 167 (229)
T ss_pred HHHHHHHHHHHhcCCcEEEEEEEcCCCCCccEEEE--cCCCCEE-EEEECCCCChH----H----H------hh-ceEEe
Confidence 211 1334444556777666555332233454332 3345521 11332221100 0 0 00 13488
Q ss_pred eeeeeehhhhHHHHh
Q 007115 381 NQLILELGPYMEELK 395 (617)
Q Consensus 381 nn~~~~L~~~~~~l~ 395 (617)
+.++|+-+.+.+.++
T Consensus 168 giy~~~~~~~~~~l~ 182 (229)
T cd02540 168 GIYAFDAEFLFEALP 182 (229)
T ss_pred EEEEEEHHHHHHHHH
Confidence 888999876666664
No 22
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=97.77 E-value=0.00083 Score=67.59 Aligned_cols=176 Identities=15% Similarity=0.131 Sum_probs=102.2
Q ss_pred EEEEcCCcCCcCCc---cCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 143 vvlLaGGlGTRLG~---~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
+|+||||.||||+- +.||.++|+. |+++++..++.+... + --.++|.|+ ..++.+.+++.+
T Consensus 3 ~iIlAaG~g~R~~~lt~~~pK~llpv~---g~pli~~~l~~l~~~----g--------~~~v~iv~~-~~~~~~~~~l~~ 66 (233)
T cd06425 3 ALILVGGYGTRLRPLTLTVPKPLVEFC---NKPMIEHQIEALAKA----G--------VKEIILAVN-YRPEDMVPFLKE 66 (233)
T ss_pred EEEecCCCccccCccccCCCCccCeEC---CcchHHHHHHHHHHC----C--------CcEEEEEee-eCHHHHHHHHhc
Confidence 68999999999964 7899999995 899999999998653 1 113456665 456778888874
Q ss_pred CC-CCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCcc
Q 007115 220 NS-YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (617)
Q Consensus 220 ~~-~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L 298 (617)
.. .+|+ . +.. . ....|-|-|+.+.... + ++...-+-+.+.+-|++.
T Consensus 67 ~~~~~~~-----~----------------i~~--~----~~~~~~G~~~al~~a~-----~-~~~~~~~~~lv~~~D~~~ 113 (233)
T cd06425 67 YEKKLGI-----K----------------ITF--S----IETEPLGTAGPLALAR-----D-LLGDDDEPFFVLNSDVIC 113 (233)
T ss_pred ccccCCe-----E----------------EEe--c----cCCCCCccHHHHHHHH-----H-HhccCCCCEEEEeCCEee
Confidence 31 1121 1 111 0 0112456554333221 1 222211224566777743
Q ss_pred ccccchHHHHHHhhcCCceeEEeeeCCcccccceEEEEecC-CCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCc
Q 007115 299 LFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHA-DGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFP 377 (617)
Q Consensus 299 ~~~~DP~~lG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~-dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~ 377 (617)
..--..++-++.+++++..+-+.+......-|.+.. +. +|+ | +++.|-+.. + . +. .
T Consensus 114 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~--d~~~~~--v--~~~~ekp~~------~---~------~~-~ 170 (233)
T cd06425 114 -DFPLAELLDFHKKHGAEGTILVTKVEDPSKYGVVVH--DENTGR--I--ERFVEKPKV------F---V------GN-K 170 (233)
T ss_pred -CCCHHHHHHHHHHcCCCEEEEEEEcCCccccCeEEE--cCCCCE--E--EEEEECCCC------C---C------CC-E
Confidence 222246788888889998888777544445676543 22 343 3 555443211 1 1 11 2
Q ss_pred cceeeeeeehhhh
Q 007115 378 GNINQLILELGPY 390 (617)
Q Consensus 378 gNinn~~~~L~~~ 390 (617)
.|+..++|+-+.+
T Consensus 171 ~~~Giyi~~~~~l 183 (233)
T cd06425 171 INAGIYILNPSVL 183 (233)
T ss_pred EEEEEEEECHHHH
Confidence 4889999997644
No 23
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=97.75 E-value=0.00061 Score=71.01 Aligned_cols=196 Identities=17% Similarity=0.130 Sum_probs=110.0
Q ss_pred EEEEEcCCcCCcCC----ccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 007115 142 AFVLVAGGLGERLG----YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (617)
Q Consensus 142 avvlLaGGlGTRLG----~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l 217 (617)
-+|+||||.||||. ...||.++|+. .++|++|..++++..+. ..-.++|.|+...++.+++++
T Consensus 2 ~~vILAgG~GtRl~PlS~~~~PK~ll~l~--g~~~li~~~l~~l~~~~-----------~~~~i~vvt~~~~~~~v~~~l 68 (274)
T cd02509 2 YPVILAGGSGTRLWPLSRESYPKQFLKLF--GDKSLLQQTLDRLKGLV-----------PPDRILVVTNEEYRFLVREQL 68 (274)
T ss_pred EEEEEcccccccCCcCCCCCCCceEeEcC--CCCcHHHHHHHHHhcCC-----------CCCcEEEEechHHHHHHHHHH
Confidence 46899999999995 57899999995 33999999999886431 023778889876667777777
Q ss_pred HhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCch-hhHhhhhcChhHHHHH-cCceEEEEEeCC
Q 007115 218 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD-VHALLYSSGLLKEWHD-AGLKWVLFFQDT 295 (617)
Q Consensus 218 ~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGd-i~~aL~~sG~ld~l~~-~G~eyi~v~~vD 295 (617)
++ .+ . .+ .++.. + .|-|.|+ +..++. .+.+ .+-+++.|.+.|
T Consensus 69 ~~---~~-~--~~----------------~ii~e---p-----~~~gTa~ai~~a~~------~~~~~~~~~~vlVl~~D 112 (274)
T cd02509 69 PE---GL-P--EE----------------NIILE---P-----EGRNTAPAIALAAL------YLAKRDPDAVLLVLPSD 112 (274)
T ss_pred hh---cC-C--Cc----------------eEEEC---C-----CCCCcHHHHHHHHH------HHHhcCCCCeEEEecch
Confidence 65 11 1 11 12221 1 1223333 222221 1222 234788888889
Q ss_pred Cccccccch-HHHHHH---hhcCCceeEEeeeCCcccccceEEEEecCCC-ceeEEEEeecCCCHHHhhcCCCCCCCccC
Q 007115 296 NGLLFKAIP-ASLGVS---ATKQYHVNSLAVPRKAKEAIGGITRLTHADG-RSMVINVEYNQLDPLLRATGFPDGDVNCE 370 (617)
Q Consensus 296 N~L~~~~DP-~~lG~~---~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG-~~~v~nVEYsel~~~l~~~~~~~g~l~~~ 370 (617)
.++....+- ..+--+ .+.+..+.+-+.+..|...-|.+-.-...+| -..| ..+.|.+..-.++. .+.
T Consensus 113 ~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~~~t~yGyI~~~~~~~~~~~~V--~~f~EKP~~~~a~~----~~~-- 184 (274)
T cd02509 113 HLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTRPETGYGYIEAGEKLGGGVYRV--KRFVEKPDLETAKE----YLE-- 184 (274)
T ss_pred hcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecCCCCCeEEEEeCCcCCCCceEE--eEEEECcChHHHHH----Hhh--
Confidence 865311111 122111 2256677777767666666776643111112 1233 44555543321111 010
Q ss_pred CCCCCCccceeeeeeehhhhHHHHhh
Q 007115 371 TGYSPFPGNINQLILELGPYMEELKK 396 (617)
Q Consensus 371 ~gf~~f~gNinn~~~~L~~~~~~l~~ 396 (617)
.|-..+ |+..+.|+.+.+.+.+++
T Consensus 185 ~g~~~w--NsGiyi~~~~~l~~~l~~ 208 (274)
T cd02509 185 SGNYLW--NSGIFLFRAKTFLEELKK 208 (274)
T ss_pred cCCeEE--ECceeeeeHHHHHHHHHH
Confidence 111123 999999999988888875
No 24
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.73 E-value=0.0012 Score=69.79 Aligned_cols=187 Identities=14% Similarity=0.168 Sum_probs=122.5
Q ss_pred cceEEEEEcCCcCCcC---CccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHH
Q 007115 139 KNAAFVLVAGGLGERL---GYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (617)
Q Consensus 139 ~kvavvlLaGGlGTRL---G~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~ 215 (617)
..++.|+|.||-|||| -.+.||.+.|++ .+.+++.+++.+... ..--+|+.|+++-.+-.+.
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpfg---n~pmI~hqieal~ns------------Gi~~I~la~~y~s~sl~~~ 72 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPFG---NKPMILHQIEALINS------------GITKIVLATQYNSESLNRH 72 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCcccccC---cchhhHHHHHHHHhC------------CCcEEEEEEecCcHHHHHH
Confidence 4688999999999998 468999999996 888888887766532 2456788999888777778
Q ss_pred HHHhCC-CCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeC
Q 007115 216 LLESNS-YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQD 294 (617)
Q Consensus 216 ~l~~~~-~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~v 294 (617)
+.+.|. .|| ..|. |.|.+.| -|--|-..+.++ .|... .+- -.+|-+-
T Consensus 73 ~~k~y~~~lg---Vei~-~s~etep-----------------------lgtaGpl~laR~--~L~~~--~~~-~ffVLns 120 (371)
T KOG1322|consen 73 LSKAYGKELG---VEIL-ASTETEP-----------------------LGTAGPLALARD--FLWVF--EDA-PFFVLNS 120 (371)
T ss_pred HHHHhhhccc---eEEE-EEeccCC-----------------------CcccchHHHHHH--Hhhhc--CCC-cEEEecC
Confidence 888772 344 2333 3333333 333333332221 11111 111 4567777
Q ss_pred CCccccccchHHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCC
Q 007115 295 TNGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYS 374 (617)
Q Consensus 295 DN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~ 374 (617)
|= +++..--.|+-+|..+++|...-|++=...-+-|++.. ....|+ | +.+.|.++.+...++
T Consensus 121 Dv-i~~~p~~~~vqfH~~~gae~TI~~t~vdepSkyGvv~~-d~~~gr--V--~~F~EKPkd~vsnki------------ 182 (371)
T KOG1322|consen 121 DV-ICRMPYKEMVQFHRAHGAEITIVVTKVDEPSKYGVVVI-DEDTGR--V--IRFVEKPKDLVSNKI------------ 182 (371)
T ss_pred Ce-eecCCHHHHHHHHHhcCCceEEEEEeccCccccceEEE-ecCCCc--e--eEehhCchhhhhccc------------
Confidence 76 77776678999999999999988888555566787654 122444 3 778888776543322
Q ss_pred CCccceeeeeeehhhhHHHH
Q 007115 375 PFPGNINQLILELGPYMEEL 394 (617)
Q Consensus 375 ~f~gNinn~~~~L~~~~~~l 394 (617)
|.....|+-+.+.+++
T Consensus 183 ----naGiYi~~~~vL~ri~ 198 (371)
T KOG1322|consen 183 ----NAGIYILNPEVLDRIL 198 (371)
T ss_pred ----cceEEEECHHHHhHhh
Confidence 5566677777666555
No 25
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=97.70 E-value=0.00075 Score=67.19 Aligned_cols=65 Identities=22% Similarity=0.365 Sum_probs=51.2
Q ss_pred EEEEcCCcCCcCCc---cCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 143 vvlLaGGlGTRLG~---~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
.|+||||.||||+- ..||.++|+. |+++++..++.+.+. .+.-+++......+.+.+++..
T Consensus 2 aiIlaaG~g~Rl~plt~~~pK~llpi~---g~~li~~~l~~l~~~-------------gi~~i~iv~~~~~~~i~~~~~~ 65 (221)
T cd06422 2 AMILAAGLGTRMRPLTDTRPKPLVPVA---GKPLIDHALDRLAAA-------------GIRRIVVNTHHLADQIEAHLGD 65 (221)
T ss_pred EEEEcCCCCCccccccCCCCCceeeEC---CEEHHHHHHHHHHHC-------------CCCEEEEEccCCHHHHHHHHhc
Confidence 48899999999974 7999999995 999999999988753 3444455556778889999886
Q ss_pred CCCCC
Q 007115 220 NSYFG 224 (617)
Q Consensus 220 ~~~FG 224 (617)
.++|
T Consensus 66 -~~~~ 69 (221)
T cd06422 66 -SRFG 69 (221)
T ss_pred -ccCC
Confidence 4444
No 26
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=97.70 E-value=0.00068 Score=66.63 Aligned_cols=139 Identities=17% Similarity=0.152 Sum_probs=86.2
Q ss_pred EEEEcCCcCCcCC---ccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
+|+||||.||||+ ...||.++|+. |++++++.++.+... + --.++|.|.. ..+.+.+++.+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~---g~pli~~~l~~l~~~----g--------~~~i~vv~~~-~~~~i~~~~~~ 64 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIA---GKPILEYIIERLARA----G--------IDEIILVVGY-LGEQIEEYFGD 64 (217)
T ss_pred CEEecCCccccccccccCCCccccEEC---CeeHHHHHHHHHHHC----C--------CCEEEEEecc-CHHHHHHHHcC
Confidence 3789999999997 36899999995 999999999988643 1 1235566655 45677888876
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 007115 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (617)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~ 299 (617)
...+|+ .|.+. . . ..|.|.|+...... +.+ .-+++.+..-|++..
T Consensus 65 ~~~~~~---~i~~~----------------~--~------~~~~g~~~al~~~~-----~~~---~~~~~lv~~~D~~~~ 109 (217)
T cd04181 65 GSKFGV---NIEYV----------------V--Q------EEPLGTAGAVRNAE-----DFL---GDDDFLVVNGDVLTD 109 (217)
T ss_pred hhhcCc---eEEEE----------------e--C------CCCCccHHHHHHhh-----hhc---CCCCEEEEECCeecC
Confidence 543332 12111 1 0 02355544433322 122 457788888998533
Q ss_pred cccchHHHHHHhhcCCceeEEeeeCCcccccceE
Q 007115 300 FKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGI 333 (617)
Q Consensus 300 ~~~DP~~lG~~~~~~~d~~~kvv~r~~~E~vG~i 333 (617)
... -.++-++..+++++.+-+.+......-|.+
T Consensus 110 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 142 (217)
T cd04181 110 LDL-SELLRFHREKGADATIAVKEVEDPSRYGVV 142 (217)
T ss_pred cCH-HHHHHHHHhcCCCEEEEEEEcCCCCcceEE
Confidence 222 335667777888887776665444445654
No 27
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=97.69 E-value=0.00059 Score=68.81 Aligned_cols=184 Identities=17% Similarity=0.164 Sum_probs=109.7
Q ss_pred EEEEcCCcCCcCC---ccCCcccCCcccCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007115 143 FVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (617)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~gk-s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (617)
.|+||||.||||. .+.||.++|+. ++ +++++.++++... + .--+++.+.....+...++++
T Consensus 2 avIla~G~GtRl~plt~~~pK~ll~i~---g~~pli~~~l~~l~~~----g--------~~~ii~V~~~~~~~~i~~~~~ 66 (248)
T PF00483_consen 2 AVILAGGKGTRLRPLTDTIPKPLLPIG---GKYPLIDYVLENLANA----G--------IKEIIVVVNGYKEEQIEEHLG 66 (248)
T ss_dssp EEEEEESCCGGGTTTTTTSSGGGSEET---TEEEHHHHHHHHHHHT----T--------CSEEEEEEETTTHHHHHHHHT
T ss_pred EEEECCCCCccCchhhhccccccceec---CCCcchhhhhhhhccc----C--------CceEEEEEeeccccccccccc
Confidence 4678999999996 68899999996 88 9999999988753 2 112356666667788999999
Q ss_pred hCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcC-ceEEEEEeCCCc
Q 007115 219 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAG-LKWVLFFQDTNG 297 (617)
Q Consensus 219 ~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G-~eyi~v~~vDN~ 297 (617)
+...+++ +|.+ +. . ..|.|.|+...... +.+.... -+++.+.+.|++
T Consensus 67 ~~~~~~~---~i~~----------------i~--~------~~~~Gta~al~~a~-----~~i~~~~~~~~~lv~~gD~i 114 (248)
T PF00483_consen 67 SGYKFGV---KIEY----------------IV--Q------PEPLGTAGALLQAL-----DFIEEEDDDEDFLVLNGDII 114 (248)
T ss_dssp TSGGGTE---EEEE----------------EE--E------SSSSCHHHHHHHTH-----HHHTTSEE-SEEEEETTEEE
T ss_pred ccccccc---ccee----------------ee--c------ccccchhHHHHHHH-----HHhhhccccceEEEEecccc
Confidence 8765551 1221 11 0 11126666554432 2222222 357889999994
Q ss_pred cccccchHHHHHHhhcCCce--eEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCC
Q 007115 298 LLFKAIPASLGVSATKQYHV--NSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSP 375 (617)
Q Consensus 298 L~~~~DP~~lG~~~~~~~d~--~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~ 375 (617)
. ...-..++-.+..++.++ .+..++......-|.+.. +.+|+ | ++.-|.+.. ... ..
T Consensus 115 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~--d~~~~--V--~~~~EKP~~---------~~~----~~- 173 (248)
T PF00483_consen 115 F-DDDLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEV--DEDGR--V--IRIVEKPDN---------PNA----SN- 173 (248)
T ss_dssp E-STTHHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEE--ETTSE--E--EEEEESCSS---------HSH----SS-
T ss_pred c-cchhhhHHHhhhccccccccccccccccccccceeeee--cccee--E--EEEeccCcc---------ccc----ce-
Confidence 3 332256788888888844 444445445555665543 34453 3 333333221 000 01
Q ss_pred CccceeeeeeehhhhHHHHh
Q 007115 376 FPGNINQLILELGPYMEELK 395 (617)
Q Consensus 376 f~gNinn~~~~L~~~~~~l~ 395 (617)
..|+...+|+-+.+...++
T Consensus 174 -~~~~G~Y~~~~~~~~~~~~ 192 (248)
T PF00483_consen 174 -LINTGIYIFKPEIFDFLLE 192 (248)
T ss_dssp -EEEEEEEEEETHHHHHHHH
T ss_pred -eccCceEEEcchHHHHHhh
Confidence 2488889998876555543
No 28
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=97.68 E-value=0.00043 Score=69.99 Aligned_cols=143 Identities=17% Similarity=0.193 Sum_probs=84.9
Q ss_pred EEEEEcCCcCCcCCc---cCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007115 142 AFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (617)
Q Consensus 142 avvlLaGGlGTRLG~---~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (617)
.+|+||||.||||+- ..||.++|+. +++++++.++.+.+. + .-.++|.++....+...+++.
T Consensus 2 ~~iIlAaG~gtRl~plt~~~pK~llpv~---~~pli~~~l~~l~~~----g--------i~~i~vv~~~~~~~~~~~~l~ 66 (240)
T cd02538 2 KGIILAGGSGTRLYPLTKVVSKQLLPVY---DKPMIYYPLSTLMLA----G--------IREILIISTPEDLPLFKELLG 66 (240)
T ss_pred eEEEEcCcCcccCCccccCCCceeeEEC---CEEhHHHHHHHHHHC----C--------CCEEEEEeCcchHHHHHHHHh
Confidence 468999999999975 7899999996 999999999888632 2 224666677666677888887
Q ss_pred hCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCcc
Q 007115 219 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (617)
Q Consensus 219 ~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L 298 (617)
....+|+. |.+ .. + ..|.|.|+....-.. +.. + +...+.+-|+++
T Consensus 67 ~~~~~~~~---i~~----------------~~--~------~~~~G~~~al~~a~~------~~~-~-~~~lv~~gD~~~ 111 (240)
T cd02538 67 DGSDLGIR---ITY----------------AV--Q------PKPGGLAQAFIIGEE------FIG-D-DPVCLILGDNIF 111 (240)
T ss_pred cccccCce---EEE----------------ee--C------CCCCCHHHHHHHHHH------hcC-C-CCEEEEECCEEE
Confidence 65544432 111 00 0 123455543322111 121 1 334566788854
Q ss_pred ccccchHHHHHHhhcCCceeEEeeeCCcccccceEE
Q 007115 299 LFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGIT 334 (617)
Q Consensus 299 ~~~~DP~~lG~~~~~~~d~~~kvv~r~~~E~vG~i~ 334 (617)
...---.++-++.+++.++..-+.+....+.-|++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ 147 (240)
T cd02538 112 YGQGLSPILQRAAAQKEGATVFGYEVNDPERYGVVE 147 (240)
T ss_pred ccHHHHHHHHHHHhcCCCcEEEEEECCchhcCceEE
Confidence 322112345566666777766555533334567643
No 29
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.68 E-value=0.0021 Score=72.14 Aligned_cols=186 Identities=17% Similarity=0.175 Sum_probs=106.2
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
.++.|+||||.||||+.+.||.++|+. +++++++.++++.+. + .-.++|.++. ..+.+.++++.
T Consensus 4 ~~~avILAaG~gtRm~~~~pK~llpi~---gkpli~~~l~~l~~~----g--------~~~iivvv~~-~~~~i~~~~~~ 67 (482)
T PRK14352 4 PTAVIVLAAGAGTRMRSDTPKVLHTLA---GRSMLGHVLHAAAGL----A--------PQHLVVVVGH-DRERVAPAVAE 67 (482)
T ss_pred CceEEEEcCCCCCcCCCCCCceeceeC---CccHHHHHHHHHHhc----C--------CCcEEEEECC-CHHHHHHHhhc
Confidence 568899999999999988899999995 999999999988753 1 2356677765 35567777754
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCch-hhHhhhhcChhHHHHHcCceEEEEEeCCCcc
Q 007115 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD-VHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (617)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGd-i~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L 298 (617)
.. . .+.+..| ..|.|.|+ ++.++. .+....-++++|.+.|+++
T Consensus 68 ~~----~--~~~~~~~------------------------~~~~Gt~~si~~al~------~l~~~~~~~vlV~~gD~P~ 111 (482)
T PRK14352 68 LA----P--EVDIAVQ------------------------DEQPGTGHAVQCALE------ALPADFDGTVVVTAGDVPL 111 (482)
T ss_pred cC----C--ccEEEeC------------------------CCCCCcHHHHHHHHH------HhccCCCCeEEEEeCCeec
Confidence 21 0 1111111 11334333 454443 2222234678889999976
Q ss_pred ccccch-HHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCc
Q 007115 299 LFKAIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFP 377 (617)
Q Consensus 299 ~~~~DP-~~lG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~ 377 (617)
....+. .++-.+...+.++..-+.+.......|.+.. ..+|+.. ..+|....... ... .. .
T Consensus 112 ~~~~~l~~li~~~~~~~~~~~v~~~~~~~p~~yg~~~~--~~~g~V~-~~~EKp~~~~~---------~~~----~~--~ 173 (482)
T PRK14352 112 LDGETLADLVATHTAEGNAVTVLTTTLDDPTGYGRILR--DQDGEVT-AIVEQKDATPS---------QRA----IR--E 173 (482)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEEEeecCCCCCCCEEEE--CCCCCEE-EEEECCCCCHH---------Hhh----cc--e
Confidence 543222 2344555556655444444333344565432 4456531 12443322111 000 01 2
Q ss_pred cceeeeeeehhhhHHHHh
Q 007115 378 GNINQLILELGPYMEELK 395 (617)
Q Consensus 378 gNinn~~~~L~~~~~~l~ 395 (617)
.|+..++|+-+.|.+.++
T Consensus 174 ~~~Giy~f~~~~l~~~~~ 191 (482)
T PRK14352 174 VNSGVYAFDAAVLRSALA 191 (482)
T ss_pred EEEEEEEEEHHHHHHHHH
Confidence 388889999876666554
No 30
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.68 E-value=0.0011 Score=73.34 Aligned_cols=184 Identities=16% Similarity=0.135 Sum_probs=100.3
Q ss_pred eEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhC
Q 007115 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 220 (617)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~ 220 (617)
+++|+||||.|||||.+.||.++|+. +++++++.++.+.+. + ....+|.+.. ..+.+.++++++
T Consensus 2 ~~~iIlAaG~gsR~~~~~pK~ll~v~---gkpli~~~l~~l~~~----g--------~~~iivvv~~-~~~~i~~~~~~~ 65 (450)
T PRK14360 2 LAVAILAAGKGTRMKSSLPKVLHPLG---GKSLVERVLDSCEEL----K--------PDRRLVIVGH-QAEEVEQSLAHL 65 (450)
T ss_pred ceEEEEeCCCCccCCCCCChhcCEEC---ChhHHHHHHHHHHhC----C--------CCeEEEEECC-CHHHHHHHhccc
Confidence 67899999999999988999999995 999999999988643 1 2245555554 345566666532
Q ss_pred CCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCcccc
Q 007115 221 SYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLF 300 (617)
Q Consensus 221 ~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~~ 300 (617)
. .+.+..| . .+.|.++.+... ++.+. ..-++++|...|.++..
T Consensus 66 ~-------~i~~v~~------------------~------~~~G~~~sv~~~-----~~~l~-~~~~~vlV~~~D~P~i~ 108 (450)
T PRK14360 66 P-------GLEFVEQ------------------Q------PQLGTGHAVQQL-----LPVLK-GFEGDLLVLNGDVPLLR 108 (450)
T ss_pred C-------CeEEEEe------------------C------CcCCcHHHHHHH-----HHHhh-ccCCcEEEEeCCccccC
Confidence 1 1222111 0 134444433222 12222 22346778888987643
Q ss_pred ccc-hHHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCccc
Q 007115 301 KAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGN 379 (617)
Q Consensus 301 ~~D-P~~lG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gN 379 (617)
..+ -.++-.+.+.++++..-+.++......|.+. + +.+|+.. ..+|...+.+. +. + +. ..|
T Consensus 109 ~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~-~-d~~g~v~-~~~ek~~~~~~---~~-~----------~~-~~~ 170 (450)
T PRK14360 109 PETLEALLNTHRSSNADVTLLTARLPNPKGYGRVF-C-DGNNLVE-QIVEDRDCTPA---QR-Q----------NN-RIN 170 (450)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEecCCCCCccEEE-E-CCCCCEE-EEEECCCCChh---Hh-c----------Cc-EEE
Confidence 322 2234555566666654433333222346432 2 4455531 11333222110 00 0 01 238
Q ss_pred eeeeeeehhhhHHHHh
Q 007115 380 INQLILELGPYMEELK 395 (617)
Q Consensus 380 inn~~~~L~~~~~~l~ 395 (617)
+..++|+-+.+.+.++
T Consensus 171 ~Giy~f~~~~l~~~~~ 186 (450)
T PRK14360 171 AGIYCFNWPALAEVLP 186 (450)
T ss_pred EEEEEEEHHHHHHHHh
Confidence 8888999876666654
No 31
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.68 E-value=0.0019 Score=71.41 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=49.3
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
++..|+||||.||||+...||.++|+. |++++++.++.+... + .-.++|.++. .++.+.+++.+
T Consensus 5 ~~~aiILAaG~gsR~~~~~pK~ll~v~---gkpli~~~l~~l~~~----g--------i~~ivvv~~~-~~~~i~~~~~~ 68 (446)
T PRK14353 5 TCLAIILAAGEGTRMKSSLPKVLHPVA---GRPMLAHVLAAAASL----G--------PSRVAVVVGP-GAEAVAAAAAK 68 (446)
T ss_pred cceEEEEcCCCCCccCCCCCcccCEEC---CchHHHHHHHHHHhC----C--------CCcEEEEECC-CHHHHHHHhhc
Confidence 578899999999999987899999995 999999999988643 1 1245566654 45667777653
No 32
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=97.66 E-value=0.00049 Score=74.30 Aligned_cols=156 Identities=10% Similarity=0.088 Sum_probs=92.6
Q ss_pred ceEEEEEcCCcCCcCC---ccCCcccCCcccCCCc-chHHHHHHHHHHHHHHhhhhccCCcccc-cEEEecCccchHHHH
Q 007115 140 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQ 214 (617)
Q Consensus 140 kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~gk-s~lql~~~~i~~l~~~~~~~~~g~~~~i-Pl~IMTS~~T~~~T~ 214 (617)
++.+|+||||.||||. .+.||.++|+. |+ ++++++++.+.+. .+ -++|.++..-.+.++
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKpLlpV~---gk~PlIe~~l~~L~~~-------------Gi~~I~iv~~~~~~~~I~ 65 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLASLPFG---GRYRLIDFPLSNMVNA-------------GIRNVFIFFKNKERQSLF 65 (369)
T ss_pred cEEEEEECCCCCccccccccCCcccccccC---CeeeEEEEEhhhhhcc-------------CCCEEEEEeCCCcHHHHH
Confidence 5678999999999996 48999999996 99 8999999998753 23 345555544444999
Q ss_pred HHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeC
Q 007115 215 ELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQD 294 (617)
Q Consensus 215 ~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~v 294 (617)
+||.+...||++..+ ..+..+ +. .+ ..|-|.|+.+..... .+.+...+-+++.+.+-
T Consensus 66 ~~l~~~~~~~~~~~~------~~~~~~-------~~--~e-----~~~l~tg~~~a~~~a---~~~l~~~~~~~~lvlnG 122 (369)
T TIGR02092 66 DHLGSGREWDLHRKR------DGLFVF-------PY--ND-----RDDLSEGGKRYFSQN---LEFLKRSTSEYTVVLNS 122 (369)
T ss_pred HHHhCCCCCCccccc------CcEEEE-------ec--cC-----CCCcccChHHHHHHH---HHHHHhCCCCEEEEECC
Confidence 999876667764211 111111 01 11 123333444322211 22222223478889999
Q ss_pred CCccccccc-hHHHHHHhhcCCceeEEeeeCC--cccccceEEEE
Q 007115 295 TNGLLFKAI-PASLGVSATKQYHVNSLAVPRK--AKEAIGGITRL 336 (617)
Q Consensus 295 DN~L~~~~D-P~~lG~~~~~~~d~~~kvv~r~--~~E~vG~i~~~ 336 (617)
|+ +.. .| -.++-++.++++++.+-+.+-. .....|+++.+
T Consensus 123 D~-l~~-~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~vv~~ 165 (369)
T TIGR02092 123 HM-VCN-IDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRF 165 (369)
T ss_pred CE-EEe-cCHHHHHHHHHHcCCCEEEEEEecCHHHccccCcEEEE
Confidence 98 432 33 3457777778888755554422 12334555443
No 33
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=97.64 E-value=0.0012 Score=64.98 Aligned_cols=137 Identities=18% Similarity=0.224 Sum_probs=82.8
Q ss_pred EEEEcCCcCCcCCc---cCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCccccc-EEEecCccchHHHHHHHH
Q 007115 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELLE 218 (617)
Q Consensus 143 vvlLaGGlGTRLG~---~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iP-l~IMTS~~T~~~T~~~l~ 218 (617)
+|+||||.||||+- ..||.++|+. |+++++..++.+... .+. ++|.| ....+.+.+++.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~---g~pli~~~l~~l~~~-------------g~~~v~vv~-~~~~~~i~~~~~ 63 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVA---GRPFLEYLLEYLARQ-------------GISRIVLSV-GYLAEQIEEYFG 63 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEEC---CcchHHHHHHHHHHC-------------CCCEEEEEc-ccCHHHHHHHHc
Confidence 47899999999974 5899999996 999999999888642 233 44444 455677888887
Q ss_pred hCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCch-hhHhhhhcChhHHHHHcCceEEEEEeCCCc
Q 007115 219 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD-VHALLYSSGLLKEWHDAGLKWVLFFQDTNG 297 (617)
Q Consensus 219 ~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGd-i~~aL~~sG~ld~l~~~G~eyi~v~~vDN~ 297 (617)
....+|. ++.+ . . . ..+-|.++ ++.++. .+ +-+++.+.+.|++
T Consensus 64 ~~~~~~~---~~~~--------~-~---------~------~~~~G~~~~l~~a~~------~~---~~~~~lv~~~D~~ 107 (223)
T cd06915 64 DGYRGGI---RIYY--------V-I---------E------PEPLGTGGAIKNALP------KL---PEDQFLVLNGDTY 107 (223)
T ss_pred CccccCc---eEEE--------E-E---------C------CCCCcchHHHHHHHh------hc---CCCCEEEEECCcc
Confidence 5332221 1111 1 0 0 12345554 444432 12 2367888889986
Q ss_pred cccccchHHHHHHhhcCCceeEEeeeCCcccccceE
Q 007115 298 LLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGI 333 (617)
Q Consensus 298 L~~~~DP~~lG~~~~~~~d~~~kvv~r~~~E~vG~i 333 (617)
+....+ .++-.+.+.+.++.+-+.+......-|.+
T Consensus 108 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~v 142 (223)
T cd06915 108 FDVDLL-ALLAALRASGADATMALRRVPDASRYGNV 142 (223)
T ss_pred cCCCHH-HHHHHHHhCCCcEEEEEEECCCCCcceeE
Confidence 533322 33445556678887776664333445544
No 34
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=97.63 E-value=0.0021 Score=64.48 Aligned_cols=68 Identities=29% Similarity=0.372 Sum_probs=52.5
Q ss_pred eEEEEEcCCcCCcCC---ccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 007115 141 AAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (617)
Q Consensus 141 vavvlLaGGlGTRLG---~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l 217 (617)
+.+|+||||.||||+ ...||.++|+. |+++++..++.+.+. + .-.++|.|+. ..+.+.+++
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~---g~~li~~~l~~l~~~----~--------~~~i~vv~~~-~~~~~~~~~ 64 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVA---GKPIIQYAIEDLREA----G--------IEDIGIVVGP-TGEEIKEAL 64 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEEC---CcchHHHHHHHHHHC----C--------CCEEEEEcCC-CHHHHHHHh
Confidence 357899999999996 58999999995 999999999888642 2 1245677776 777888888
Q ss_pred HhCCCCC
Q 007115 218 ESNSYFG 224 (617)
Q Consensus 218 ~~~~~FG 224 (617)
++...+|
T Consensus 65 ~~~~~~~ 71 (236)
T cd04189 65 GDGSRFG 71 (236)
T ss_pred cchhhcC
Confidence 8755444
No 35
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=97.62 E-value=0.0007 Score=75.12 Aligned_cols=215 Identities=14% Similarity=0.170 Sum_probs=117.9
Q ss_pred cceEEEEEcCCcCCcCC---ccCCcccCCcccCCCc-chHHHHHHHHHHHHHHhhhhccCCccccc-EEEecCccchHHH
Q 007115 139 KNAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRT 213 (617)
Q Consensus 139 ~kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~gk-s~lql~~~~i~~l~~~~~~~~~g~~~~iP-l~IMTS~~T~~~T 213 (617)
.++.+|+||||.||||. ...||.++|+. |+ +++++.++.+... .+- ++|.+ .+..+.+
T Consensus 2 ~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~---g~~plId~~L~~l~~~-------------Gi~~i~iv~-~~~~~~i 64 (436)
T PLN02241 2 KSVAAIILGGGAGTRLFPLTKRRAKPAVPIG---GNYRLIDIPMSNCINS-------------GINKIYVLT-QFNSASL 64 (436)
T ss_pred CceEEEEEeCCCCCcchhhhcCCcccceEeC---CcceEehHHHHHHHhC-------------CCCEEEEEe-ccCHHHH
Confidence 36789999999999997 58999999995 75 9999998888632 233 34444 4577889
Q ss_pred HHHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEe
Q 007115 214 QELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQ 293 (617)
Q Consensus 214 ~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~ 293 (617)
.++|++..+|+... -+.++.+..+.. . ... .....|-|.||....... .+++...++-+++.+.+
T Consensus 65 ~~~l~~~~~~~~~~----~~~~~~~~i~~~------~--q~~-~~~~~~lGt~~al~~~~~--~~~~~~~~~~~~~lv~~ 129 (436)
T PLN02241 65 NRHLSRAYNFGNGG----NFGDGFVEVLAA------T--QTP-GEKGWFQGTADAVRQFLW--LFEDAKNKNVEEVLILS 129 (436)
T ss_pred HHHHhccCCCCCCc----ccCCCCEEEcCC------c--ccC-CCCccccCcHHHHHHHHH--HHHhcccCCCCEEEEec
Confidence 99998543344221 011111111100 0 000 001257888876644322 23322222357888999
Q ss_pred CCCccccccc-hHHHHHHhhcCCceeEEeee--CCcccccceEEEEecCCCceeEEEEeecCCCHHHh--hcCCCCCCC-
Q 007115 294 DTNGLLFKAI-PASLGVSATKQYHVNSLAVP--RKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLR--ATGFPDGDV- 367 (617)
Q Consensus 294 vDN~L~~~~D-P~~lG~~~~~~~d~~~kvv~--r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~--~~~~~~g~l- 367 (617)
-|++ . ..| -.++-++.++++++..-+.+ +......|++.. +.+|+ + ++|.|.+..-. ..+.+ ..+
T Consensus 130 gD~v-~-~~dl~~ll~~h~~~~a~~ti~~~~v~~~~~~~ygvv~~--d~~~~--v--~~~~Ekp~~~~~~~~~~~-~~~~ 200 (436)
T PLN02241 130 GDHL-Y-RMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKI--DDTGR--I--IEFSEKPKGDELKAMQVD-TTVL 200 (436)
T ss_pred CCeE-E-ccCHHHHHHHHHHcCCCEEEEEEecchhhcCcceEEEE--CCCCC--E--EEEEECCCCccccccccc-cccc
Confidence 9984 3 334 34677788888886554433 222355676543 33444 3 56666542210 00000 000
Q ss_pred --c--cCCCCCCCccceeeeeeehhhhHHHHh
Q 007115 368 --N--CETGYSPFPGNINQLILELGPYMEELK 395 (617)
Q Consensus 368 --~--~~~gf~~f~gNinn~~~~L~~~~~~l~ 395 (617)
. +.+..+ ...|+....|+-+.+...++
T Consensus 201 ~~~~~~~~~~~-~~~~~GIyi~~~~~l~~ll~ 231 (436)
T PLN02241 201 GLSPEEAKEKP-YIASMGIYVFKKDVLLKLLR 231 (436)
T ss_pred ccccccccccc-eEEEeEEEEEEHHHHHHHHH
Confidence 0 000001 12488888999876655554
No 36
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=97.62 E-value=0.00088 Score=68.49 Aligned_cols=152 Identities=13% Similarity=0.094 Sum_probs=87.7
Q ss_pred EEEEcCCcCCcCC---ccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
+|+||||.||||. .+.||.++|+. ++++++..++.+.+. .+.-++.......+.+++|+++
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~---~~p~i~~~~~~~~~~-------------gi~~i~iv~~~~~~~i~~~~~~ 64 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIG---GRPILWHIMKIYSHY-------------GHNDFILCLGYKGHVIKEYFLN 64 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEEC---CEEHHHHHHHHHHhC-------------CCceEEEECCCCHHHHHHHHHh
Confidence 4789999999996 47999999995 999998877776542 3433444444677889999988
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCC--CCCcc----ccccCCCchh-hHhhhhcChhHHHHHcCceEEEEE
Q 007115 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPK--NKYRI----QTKPHGHGDV-HALLYSSGLLKEWHDAGLKWVLFF 292 (617)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~--~~~~i----~~~P~GhGdi-~~aL~~sG~ld~l~~~G~eyi~v~ 292 (617)
...+|. ++.+-.| ++++...+. .++.+ ...|-|.|+. +.++. ....+ +++.+.
T Consensus 65 ~~~~~~---~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~-------~~~~~-~~~lv~ 124 (253)
T cd02524 65 YFLHNS---DVTIDLG---------TNRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRR-------YLGDD-ETFMLT 124 (253)
T ss_pred hhhhcC---ceeEeec---------ccceeeecccccccceeecccCcccccHHHHHHHHH-------hcCCC-CeEEEE
Confidence 654442 2222111 111111000 01111 1224555543 33331 11112 788999
Q ss_pred eCCCccccccchHHHHHHhhcCCceeEEeeeCCcccccceE
Q 007115 293 QDTNGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGI 333 (617)
Q Consensus 293 ~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~~~E~vG~i 333 (617)
+-|++..... -.++-++...++++...++. +....|++
T Consensus 125 ~gD~i~~~dl-~~ll~~h~~~~~~~tl~~~~--~~~~~g~v 162 (253)
T cd02524 125 YGDGVSDVNI-NALIEFHRSHGKLATVTAVH--PPGRFGEL 162 (253)
T ss_pred cCCEEECCCH-HHHHHHHHHcCCCEEEEEec--CCCcccEE
Confidence 9998654334 34566677778887665543 33445654
No 37
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.61 E-value=0.0021 Score=71.09 Aligned_cols=209 Identities=11% Similarity=0.107 Sum_probs=115.5
Q ss_pred HhhcceEEEEEcCCcCCcCCc---cCCcccCCcccCCCcc-hHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchH
Q 007115 136 KEAKNAAFVLVAGGLGERLGY---NGIKVALPAETTTGTC-FLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHS 211 (617)
Q Consensus 136 ~~l~kvavvlLaGGlGTRLG~---~~pK~~lpv~~~~gks-~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~ 211 (617)
++-.++.+|+||||.||||.- ..||.++|+. |++ ++++.++++... + .-.++|.|. +..+
T Consensus 11 ~~~~~~~aVILAaG~GtRl~pLT~~~PK~llpv~---gkp~lI~~~l~~l~~~----G--------i~~i~vv~~-~~~~ 74 (425)
T PRK00725 11 QLTRDTLALILAGGRGSRLKELTDKRAKPAVYFG---GKFRIIDFALSNCINS----G--------IRRIGVLTQ-YKAH 74 (425)
T ss_pred hhhcceEEEEECCCCCCcchhhhCCCcceeEEEC---CEEEEhHHHHHHHHHC----C--------CCeEEEEec-CCHH
Confidence 444589999999999999975 7999999996 896 999999988652 2 123566665 5678
Q ss_pred HHHHHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEE
Q 007115 212 RTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLF 291 (617)
Q Consensus 212 ~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v 291 (617)
.+.++|.+. +++.+.++ ...+. ++.+.......-.|-|.|+-.... ++.+....-+++.|
T Consensus 75 ~i~~~~~~~--~~~~~~~~----~~~i~---------i~~~~~~~~~e~~~lGTa~al~~a-----~~~l~~~~~d~~lV 134 (425)
T PRK00725 75 SLIRHIQRG--WSFFREEL----GEFVD---------LLPAQQRVDEENWYRGTADAVYQN-----LDIIRRYDPKYVVI 134 (425)
T ss_pred HHHHHHHhh--hcccccCC----CCeEE---------EeCCcccCCCCccccCcHHHHHHH-----HHHHHhcCCCEEEE
Confidence 888898753 23211110 00000 010011111122456776644332 22233333467888
Q ss_pred EeCCCccccccchHHHHHHhhcCCceeEEeeeC--CcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCcc
Q 007115 292 FQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR--KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNC 369 (617)
Q Consensus 292 ~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r--~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~ 369 (617)
.+-|++ ....--.++-++..+++++.+-+.+. .....-|++.. +.+|+ + +++.|.+..-.. ...
T Consensus 135 l~gD~l-~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~--d~~~~--V--~~~~EKp~~~~~-------~~~ 200 (425)
T PRK00725 135 LAGDHI-YKMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAV--DENDR--I--TAFVEKPANPPA-------MPG 200 (425)
T ss_pred ecCCeE-eccCHHHHHHHHHHcCCCEEEEEEecchhhcccceEEEE--CCCCC--E--EEEEECCCCccc-------ccc
Confidence 889984 32211345777778888876665432 22234465542 23444 2 344443211000 000
Q ss_pred CCCCCCCccceeeeeeehhhhHHHHhh
Q 007115 370 ETGYSPFPGNINQLILELGPYMEELKK 396 (617)
Q Consensus 370 ~~gf~~f~gNinn~~~~L~~~~~~l~~ 396 (617)
... .+..|+..+.|+-+.+.+.|.+
T Consensus 201 ~~~--~~l~n~GIYi~~~~~L~~~L~~ 225 (425)
T PRK00725 201 DPD--KSLASMGIYVFNADYLYELLEE 225 (425)
T ss_pred Ccc--ceEEEeeEEEEeHHHHHHHHHH
Confidence 000 1235899999998876666643
No 38
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.57 E-value=0.002 Score=71.67 Aligned_cols=185 Identities=19% Similarity=0.182 Sum_probs=105.5
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
++..|+||||.||||+...||.++|+. +++++++.++++.+. + .-+++|.++.. .+.+.++|.+
T Consensus 3 ~~~avIlAaG~g~Rl~~~~pK~l~pi~---g~pli~~~l~~l~~~----g--------i~~iiiv~~~~-~~~i~~~~~~ 66 (459)
T PRK14355 3 NLAAIILAAGKGTRMKSDLVKVMHPLA---GRPMVSWPVAAAREA----G--------AGRIVLVVGHQ-AEKVREHFAG 66 (459)
T ss_pred cceEEEEcCCCCcccCCCCCceeceeC---CccHHHHHHHHHHhc----C--------CCeEEEEECCC-HHHHHHHhcc
Confidence 567899999999999988999999996 899999998887643 1 23566666644 5667777753
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 007115 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (617)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~ 299 (617)
.. .+.+..|. .|-|.|+..... ++.+ ++.-+++.+.+-|+++.
T Consensus 67 ~~-------~i~~~~~~------------------------~~~Gt~~al~~a-----~~~l-~~~~~~vlv~~gD~p~~ 109 (459)
T PRK14355 67 DG-------DVSFALQE------------------------EQLGTGHAVACA-----APAL-DGFSGTVLILCGDVPLL 109 (459)
T ss_pred CC-------ceEEEecC------------------------CCCCHHHHHHHH-----HHHh-hccCCcEEEEECCccCc
Confidence 21 12211110 123555433221 2222 22247889999999765
Q ss_pred cccc-hHHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCcc
Q 007115 300 FKAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPG 378 (617)
Q Consensus 300 ~~~D-P~~lG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~g 378 (617)
...| -.++-.+...++++.....+.......|.+.. +.+|+. ++..|-++. .+.+. .+ ...
T Consensus 110 ~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~g~v~~--d~~g~v----~~~~ek~~~-----~~~~~------~~-~~~ 171 (459)
T PRK14355 110 RAETLQGMLAAHRATGAAVTVLTARLENPFGYGRIVR--DADGRV----LRIVEEKDA-----TPEER------SI-REV 171 (459)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEEEcCCCCcCCEEEE--cCCCCE----EEEEEcCCC-----ChhHh------hc-cEE
Confidence 4434 34566666667776655544422234566432 334543 233222110 00000 00 124
Q ss_pred ceeeeeeehhhhHHHHh
Q 007115 379 NINQLILELGPYMEELK 395 (617)
Q Consensus 379 Ninn~~~~L~~~~~~l~ 395 (617)
|++.++|+-+.+.+.++
T Consensus 172 ~~Giy~~~~~~l~~~l~ 188 (459)
T PRK14355 172 NSGIYCVEAAFLFDAIG 188 (459)
T ss_pred EEEEEEEeHHHHHHHHH
Confidence 88889999865555554
No 39
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=97.56 E-value=0.0016 Score=64.51 Aligned_cols=136 Identities=20% Similarity=0.225 Sum_probs=81.5
Q ss_pred EEEEcCCcCCcCC---ccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCccccc-EEEecCccchHHHHHHHH
Q 007115 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELLE 218 (617)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iP-l~IMTS~~T~~~T~~~l~ 218 (617)
+|+||||.|+||+ ...||.++|+. |+++++..++++... .+. ++|.++ ...+.+.+++.
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~---g~pli~~~l~~l~~~-------------~~~~iivv~~-~~~~~i~~~~~ 63 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVG---GKPILETIIDRFIAQ-------------GFRNFYISVN-YLAEMIEDYFG 63 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeEC---CcchHHHHHHHHHHC-------------CCcEEEEECc-cCHHHHHHHHC
Confidence 5899999999996 37899999995 999999999998743 233 344444 45667788877
Q ss_pred hCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCcc
Q 007115 219 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (617)
Q Consensus 219 ~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L 298 (617)
+...+|+ ++.+. . ++ .|.|-|+.+..+.. ..-+.+.+...|++.
T Consensus 64 ~~~~~~~---~i~~~----------------~--~~------~~~g~~~~l~~~~~---------~~~~~~lv~~~D~i~ 107 (220)
T cd06426 64 DGSKFGV---NISYV----------------R--ED------KPLGTAGALSLLPE---------KPTDPFLVMNGDILT 107 (220)
T ss_pred CccccCc---cEEEE----------------E--CC------CCCcchHHHHHHHh---------hCCCCEEEEcCCEee
Confidence 6432332 12111 0 00 12344554433321 224677788888743
Q ss_pred ccccchHHHHHHhhcCCceeEEeeeCCcccccce
Q 007115 299 LFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGG 332 (617)
Q Consensus 299 ~~~~DP~~lG~~~~~~~d~~~kvv~r~~~E~vG~ 332 (617)
.... -.++-.+...+.++.+-+.+..+....|.
T Consensus 108 ~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~g~ 140 (220)
T cd06426 108 NLNY-EHLLDFHKENNADATVCVREYEVQVPYGV 140 (220)
T ss_pred ccCH-HHHHHHHHhcCCCEEEEEEEcCCCCcceE
Confidence 2223 33566666677777766655444444443
No 40
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.54 E-value=0.0011 Score=74.41 Aligned_cols=146 Identities=19% Similarity=0.200 Sum_probs=86.4
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
++.+|+||||.||||+...||.++|+. +++++++.++++.+. + --.++|.+.. ..+.+.++++.
T Consensus 7 ~~~avILAaG~gtRl~~~~pK~llpi~---gkpli~~~l~~l~~~----g--------i~~ivvv~~~-~~~~i~~~~~~ 70 (481)
T PRK14358 7 PLDVVILAAGQGTRMKSALPKVLHPVA---GRPMVAWAVKAARDL----G--------ARKIVVVTGH-GAEQVEAALQG 70 (481)
T ss_pred CceEEEECCCCCCcCCCCCCceecEEC---CeeHHHHHHHHHHhC----C--------CCeEEEEeCC-CHHHHHHHhcc
Confidence 678899999999999988899999995 999999999888642 1 1234555554 45667777642
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhh-HhhhhcChhHHHHHcCceEEEEEeCCCcc
Q 007115 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVH-ALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (617)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~-~aL~~sG~ld~l~~~G~eyi~v~~vDN~L 298 (617)
. .+.+. . + + .|.|-|+-+ .++ +.+ ..+-+.+.+.+-|+++
T Consensus 71 ~--------~i~~v----------------~--~-~-----~~~Gt~~al~~~~------~~l-~~~~~~~lV~~gD~P~ 111 (481)
T PRK14358 71 S--------GVAFA----------------R--Q-E-----QQLGTGDAFLSGA------SAL-TEGDADILVLYGDTPL 111 (481)
T ss_pred C--------CcEEe----------------c--C-C-----CcCCcHHHHHHHH------HHh-hCCCCcEEEEeCCeec
Confidence 1 12211 1 1 0 134555433 332 222 2222235678899976
Q ss_pred ccccch-HHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCc
Q 007115 299 LFKAIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGR 342 (617)
Q Consensus 299 ~~~~DP-~~lG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~ 342 (617)
....+. .++-.+.++++++.+-+.+.....+.|++.. +.+|+
T Consensus 112 i~~~~l~~ll~~~~~~~~~~ti~~~~~~~~~~yG~v~~--d~~g~ 154 (481)
T PRK14358 112 LRPDTLRALVADHRAQGSAMTILTGELPDATGYGRIVR--GADGA 154 (481)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCceEEEE--CCCCC
Confidence 544332 3466666777776554444333334576543 34554
No 41
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=97.50 E-value=0.0046 Score=62.54 Aligned_cols=128 Identities=18% Similarity=0.124 Sum_probs=76.7
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
++++|+||||.++||+ +|.++|+. |++++++.++++... .+.-+++.+. ++.+.+++.+
T Consensus 2 ~~~~iIlA~g~S~R~~---~K~Ll~i~---Gkpll~~~l~~l~~~-------------~i~~ivvv~~--~~~i~~~~~~ 60 (245)
T PRK05450 2 KFLIIIPARYASTRLP---GKPLADIG---GKPMIVRVYERASKA-------------GADRVVVATD--DERIADAVEA 60 (245)
T ss_pred ceEEEEecCCCCCCCC---CCcccccC---CcCHHHHHHHHHHhc-------------CCCeEEEECC--cHHHHHHHHH
Confidence 5788999999999995 79999995 999999999988753 1233333332 4677777764
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 007115 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (617)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~ 299 (617)
. |. .+ +.. .. ..+.|.+.+..++. .+...+-+++.+.+.|+++.
T Consensus 61 ~---~~---~v----------~~~---------~~-----~~~~gt~~~~~~~~------~~~~~~~~~vlv~~~D~Pli 104 (245)
T PRK05450 61 F---GG---EV----------VMT---------SP-----DHPSGTDRIAEAAA------KLGLADDDIVVNVQGDEPLI 104 (245)
T ss_pred c---CC---EE----------EEC---------CC-----cCCCchHHHHHHHH------hcCCCCCCEEEEecCCCCCC
Confidence 2 21 11 110 00 11334444443332 12112346788899999876
Q ss_pred cccch-HHHHHHhhcCCceeEEeeeC
Q 007115 300 FKAIP-ASLGVSATKQYHVNSLAVPR 324 (617)
Q Consensus 300 ~~~DP-~~lG~~~~~~~d~~~kvv~r 324 (617)
...+. .++-.+..++.++..-++++
T Consensus 105 ~~~~l~~li~~~~~~~~~~~~~~~~~ 130 (245)
T PRK05450 105 PPEIIDQVAEPLANPEADMATLAVPI 130 (245)
T ss_pred CHHHHHHHHHHHhcCCCCeEeeeeec
Confidence 33222 24444444566776666655
No 42
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=97.49 E-value=0.0027 Score=65.21 Aligned_cols=158 Identities=12% Similarity=0.041 Sum_probs=90.5
Q ss_pred EEEEcCCcCCcCCc---cCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 143 vvlLaGGlGTRLG~---~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
+|+||||.||||+- ..||.++|+. |+++++..++.+.+. .|.-+++......+.+.++|.+
T Consensus 2 avilaaG~gtRl~~~t~~~pK~llpv~---g~pii~~~l~~l~~~-------------gi~~i~iv~~~~~~~i~~~~~~ 65 (254)
T TIGR02623 2 AVILAGGLGTRISEETHLRPKPMVEIG---GKPILWHIMKIYSHH-------------GINDFIICCGYKGYVIKEYFAN 65 (254)
T ss_pred EEEEcCccccccCccccCCCcceeEEC---CEEHHHHHHHHHHHC-------------CCCEEEEEcCCCHHHHHHHHHh
Confidence 47899999999964 4899999995 999999888777533 3555555556678889999986
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 007115 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (617)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~ 299 (617)
...+|. ..++.+ +++.+.... ...++.. -.......|-|.|+.+..... .+ +-+++.+.+-|++ .
T Consensus 66 ~~~~~~-~~~~~~-~~~~~~~~~-~~~~~~~---~~~~~~~~~~gt~~al~~~~~------~i--~~e~flv~~gD~i-~ 130 (254)
T TIGR02623 66 YFLHMS-DVTFHM-ADNTMEVHH-KRVEPWR---VTLVDTGESTQTGGRLKRVRE------YL--DDEAFCFTYGDGV-A 130 (254)
T ss_pred hhhccc-CeeEEe-ccccccccc-ccCCccc---eeeeecCCcCCcHHHHHHHHH------hc--CCCeEEEEeCCeE-e
Confidence 543321 123322 233333221 1111100 000011246777765543322 11 1355668888884 3
Q ss_pred cccc-hHHHHHHhhcCCceeEEeeeCCcccccceEE
Q 007115 300 FKAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGIT 334 (617)
Q Consensus 300 ~~~D-P~~lG~~~~~~~d~~~kvv~r~~~E~vG~i~ 334 (617)
..| -.++-++.+.++++.+.+++ ....-|++.
T Consensus 131 -~~dl~~~~~~h~~~~~d~tl~~~~--~~~~yG~v~ 163 (254)
T TIGR02623 131 -DIDIKALIAFHRKHGKKATVTAVQ--PPGRFGALD 163 (254)
T ss_pred -cCCHHHHHHHHHHcCCCEEEEEec--CCCcccEEE
Confidence 233 34566777778887655442 234457654
No 43
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.49 E-value=0.0018 Score=71.84 Aligned_cols=156 Identities=13% Similarity=0.098 Sum_probs=91.2
Q ss_pred ceEEEEEcCCcCCcCC---ccCCcccCCcccCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHH
Q 007115 140 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (617)
Q Consensus 140 kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~gk-s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~ 215 (617)
++.+|+||||.||||. .+.||.++|+. |+ +++++.++++... + .-.++|.|+ +..+.+++
T Consensus 3 ~~~AVILAaG~GtRL~PLT~~~PK~Llpi~---gk~plI~~~L~~l~~~----G--------i~~vivv~~-~~~~~i~~ 66 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPLTKLRAKPAVPLA---GKYRLIDIPISNCINS----G--------INKIYVLTQ-FNSASLNR 66 (429)
T ss_pred cEEEEEECCCCCCcchhhhcCCcceeeEEC---CeeEEeHHHHHHHHHC----C--------CCEEEEEec-CCHHHHHH
Confidence 6788999999999997 48999999996 88 9999999988642 2 123556665 57788999
Q ss_pred HHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCC
Q 007115 216 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDT 295 (617)
Q Consensus 216 ~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vD 295 (617)
+|.+..+++... .+.+..+... ... .-...+-|.|+...... +.+....-+++.|.+-|
T Consensus 67 ~l~~~~~~~~~~-------~g~~~i~~~~--------~~~-~~~~~~lGTa~al~~a~-----~~l~~~~~~~~lVl~gD 125 (429)
T PRK02862 67 HISQTYNFDGFS-------GGFVEVLAAQ--------QTP-ENPSWFQGTADAVRKYL-----WHFQEWDVDEYLILSGD 125 (429)
T ss_pred HHhcCcCccccC-------CCEEEEeCCc--------ccC-CCCccccCcHHHHHHHH-----HHHHhcCCCEEEEecCC
Confidence 998643222100 0101111000 000 00012257776554332 22323334678888889
Q ss_pred Cccccccc-hHHHHHHhhcCCceeEEeeeCCc--ccccceEE
Q 007115 296 NGLLFKAI-PASLGVSATKQYHVNSLAVPRKA--KEAIGGIT 334 (617)
Q Consensus 296 N~L~~~~D-P~~lG~~~~~~~d~~~kvv~r~~--~E~vG~i~ 334 (617)
+ +.. .| -.++-++.+.++++.+-+.+..+ ....|.+.
T Consensus 126 ~-l~~-~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~i~ 165 (429)
T PRK02862 126 Q-LYR-MDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMK 165 (429)
T ss_pred E-EEe-CCHHHHHHHHHHcCCCEEEEEEecChhhcccceEEE
Confidence 8 443 33 24667777788887665544221 22346543
No 44
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=97.48 E-value=0.0046 Score=63.30 Aligned_cols=178 Identities=14% Similarity=0.143 Sum_probs=100.9
Q ss_pred EEEEcCC--cCCcCCc---cCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 007115 143 FVLVAGG--LGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (617)
Q Consensus 143 vvlLaGG--lGTRLG~---~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l 217 (617)
+|+|||| .||||.- ..||.++|+. |++++++.++.+..+ . .+.-+++......+.+.+++
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~---g~plI~~~l~~l~~~---~---------gi~~i~iv~~~~~~~i~~~l 65 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVA---GKPMIHHHIEACAKV---P---------DLKEVLLIGFYPESVFSDFI 65 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeEC---CeeHHHHHHHHHHhc---C---------CCcEEEEEecCCHHHHHHHH
Confidence 3788898 8999976 8899999995 999999998887642 1 23333444445778889999
Q ss_pred HhCC-CCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCC
Q 007115 218 ESNS-YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (617)
Q Consensus 218 ~~~~-~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN 296 (617)
.+.. .+|+ .|.+. . + ..|-|.|+-..... +.+....-+++.|.+-|+
T Consensus 66 ~~~~~~~~~---~i~~~----------------~--~------~~~~Gt~~al~~a~-----~~l~~~~~~~~lv~~gD~ 113 (257)
T cd06428 66 SDAQQEFNV---PIRYL----------------Q--E------YKPLGTAGGLYHFR-----DQILAGNPSAFFVLNADV 113 (257)
T ss_pred HhcccccCc---eEEEe----------------c--C------CccCCcHHHHHHHH-----HHhhccCCCCEEEEcCCe
Confidence 7642 2222 11110 0 0 12345555333221 222222346788888998
Q ss_pred ccccccc-hHHHHHHhhcCCceeEEeeeC--CcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCC
Q 007115 297 GLLFKAI-PASLGVSATKQYHVNSLAVPR--KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGY 373 (617)
Q Consensus 297 ~L~~~~D-P~~lG~~~~~~~d~~~kvv~r--~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf 373 (617)
+. ..| -.++-++.++++++.+-+.+. .....-|++. +...+|+. .++.|-+. .+ .
T Consensus 114 ~~--~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~-~d~~~g~v----~~~~Ekp~------~~---~------ 171 (257)
T cd06428 114 CC--DFPLQELLEFHKKHGASGTILGTEASREQASNYGCIV-EDPSTGEV----LHYVEKPE------TF---V------ 171 (257)
T ss_pred ec--CCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEE-EeCCCCeE----EEEEeCCC------Cc---c------
Confidence 53 223 346778888888876555442 2233446543 31134542 33333211 01 0
Q ss_pred CCCccceeeeeeehhhh
Q 007115 374 SPFPGNINQLILELGPY 390 (617)
Q Consensus 374 ~~f~gNinn~~~~L~~~ 390 (617)
+. ..|+..++|+-+.+
T Consensus 172 ~~-~~~~Giyi~~~~~~ 187 (257)
T cd06428 172 SD-LINCGVYLFSPEIF 187 (257)
T ss_pred cc-eEEEEEEEECHHHH
Confidence 11 24999999998744
No 45
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.46 E-value=0.0037 Score=69.19 Aligned_cols=176 Identities=16% Similarity=0.108 Sum_probs=102.4
Q ss_pred EEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCC
Q 007115 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNS 221 (617)
Q Consensus 142 avvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~~ 221 (617)
.+|+||||.||||+...||.++|+. +++++++.++.+... . -.++|.++.. .+.+.+++..
T Consensus 2 ~avIlA~G~gtRl~~~~pK~l~~v~---gkpli~~~l~~l~~~----~---------~~i~vv~~~~-~~~i~~~~~~-- 62 (448)
T PRK14357 2 RALVLAAGKGTRMKSKIPKVLHKIS---GKPMINWVIDTAKKV----A---------QKVGVVLGHE-AELVKKLLPE-- 62 (448)
T ss_pred eEEEECCCCCccCCCCCCceeeEEC---CeeHHHHHHHHHHhc----C---------CcEEEEeCCC-HHHHHHhccc--
Confidence 4689999999999988999999995 999999999987652 1 1345555533 3455555431
Q ss_pred CCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCch-hhHhhhhcChhHHHHHcCceEEEEEeCCCcccc
Q 007115 222 YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD-VHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLF 300 (617)
Q Consensus 222 ~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGd-i~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~~ 300 (617)
.+.++.|+ .|.|-++ ++.++. .+ . .-+++++.+-|+++..
T Consensus 63 -------~~~~~~~~------------------------~~~g~~~ai~~a~~------~l-~-~~~~vlv~~gD~p~i~ 103 (448)
T PRK14357 63 -------WVKIFLQE------------------------EQLGTAHAVMCARD------FI-E-PGDDLLILYGDVPLIS 103 (448)
T ss_pred -------ccEEEecC------------------------CCCChHHHHHHHHH------hc-C-cCCeEEEEeCCcccCC
Confidence 11111111 1224333 333332 12 1 1368899999997654
Q ss_pred ccc-hHHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCccc
Q 007115 301 KAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGN 379 (617)
Q Consensus 301 ~~D-P~~lG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gN 379 (617)
..| -.++-++.++++++...+++......-|.+. + .+|+... +|....+... . . .+..|
T Consensus 104 ~~~i~~l~~~~~~~~~d~ti~~~~~~~~~~~g~v~-~--d~g~v~~--~e~~~~~~~~----------~----~-~~~~~ 163 (448)
T PRK14357 104 ENTLKRLIEEHNRKGADVTILVADLEDPTGYGRII-R--DGGKYRI--VEDKDAPEEE----------K----K-IKEIN 163 (448)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEEcCCCCCcEEEE-E--cCCeEEE--EECCCCChHH----------h----c-CcEEE
Confidence 444 2356666677888877666543333456543 2 2565432 5543221110 0 0 01248
Q ss_pred eeeeeeehhhhHHHHh
Q 007115 380 INQLILELGPYMEELK 395 (617)
Q Consensus 380 inn~~~~L~~~~~~l~ 395 (617)
+...+|+-+.+.+.++
T Consensus 164 ~GiYv~~~~~l~~~~~ 179 (448)
T PRK14357 164 TGIYVFSGDFLLEVLP 179 (448)
T ss_pred eEEEEEEHHHHHHHHH
Confidence 9999999775566554
No 46
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=97.44 E-value=0.0014 Score=64.45 Aligned_cols=138 Identities=14% Similarity=0.155 Sum_probs=84.6
Q ss_pred EEEEcCCcCCcCC---ccCCcccCCcccCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007115 143 FVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (617)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~gk-s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (617)
+|+||||.||||. .+.||.++|+. ++ +++++.++.+... + .-.++|.|+.. .+.+.++|.
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~---g~~pli~~~l~~l~~~----g--------i~~iivv~~~~-~~~i~~~~~ 64 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFG---GRYRLIDFPLSNMVNS----G--------IRNVGVLTQYK-SRSLNDHLG 64 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEEC---CeeeeHHHHHHHHHHC----C--------CCEEEEEeCCC-hHHHHHHHh
Confidence 3789999999996 47999999996 88 9999999988752 2 23467777755 778888998
Q ss_pred hCCCCCCCCC--cEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCC
Q 007115 219 SNSYFGMKPT--QVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (617)
Q Consensus 219 ~~~~FGl~~~--~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN 296 (617)
+...+|++.. .+.+ +. +... ...-.|-|.|+-...-. +.+...+-+++.+.+-|+
T Consensus 65 ~~~~~~~~~~~~~~~~----------------~~-~~~~-~~~~~~~Gta~al~~a~-----~~i~~~~~~~~lv~~gD~ 121 (200)
T cd02508 65 SGKEWDLDRKNGGLFI----------------LP-PQQR-KGGDWYRGTADAIYQNL-----DYIERSDPEYVLILSGDH 121 (200)
T ss_pred CCCcccCCCCCCCEEE----------------eC-cccC-CCCCcccCcHHHHHHHH-----HHHHhCCCCEEEEecCCE
Confidence 7655665311 1111 11 0000 01225667776544432 223233347778888898
Q ss_pred ccccccchHHHHHHhhcCCceeEE
Q 007115 297 GLLFKAIPASLGVSATKQYHVNSL 320 (617)
Q Consensus 297 ~L~~~~DP~~lG~~~~~~~d~~~k 320 (617)
+ ....--.++-++.+++.++..-
T Consensus 122 v-~~~~~~~~l~~~~~~~~~~t~~ 144 (200)
T cd02508 122 I-YNMDYREMLDFHIESGADITVV 144 (200)
T ss_pred E-EecCHHHHHHHHHHcCCCEEEE
Confidence 4 3322234566666666665443
No 47
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=97.40 E-value=0.0061 Score=65.42 Aligned_cols=140 Identities=19% Similarity=0.204 Sum_probs=87.3
Q ss_pred EEEEcCCcCCcCC---ccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
+|+||||.||||+ ...||.++|+. +++++++.++.+.+. + .-.++|+|+....+.+.+++.+
T Consensus 2 aiIlAaG~gtRl~plt~~~pK~l~pv~---g~pli~~~l~~l~~~----g--------i~~i~vv~~~~~~~~i~~~~~~ 66 (353)
T TIGR01208 2 ALILAAGKGTRLRPLTFTRPKQLIPVA---NKPILQYAIEDLAEA----G--------ITDIGIVVGPVTGEEIKEIVGE 66 (353)
T ss_pred EEEECCcCcCccCccccCCCccccEEC---CEeHHHHHHHHHHHC----C--------CCEEEEEeCCCCHHHHHHHHhc
Confidence 5889999999996 48899999995 999999999888643 1 2246778887688889999987
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 007115 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (617)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~ 299 (617)
...||++ +.+..| ..|.|.++...+... .+ . +-.++ +.+-|+++-
T Consensus 67 ~~~~~~~---~~~~~~------------------------~~~~G~~~al~~a~~-----~l-~-~~~~l-i~~gD~~~~ 111 (353)
T TIGR01208 67 GERFGAK---ITYIVQ------------------------GEPLGLAHAVYTARD-----FL-G-DDDFV-VYLGDNLIQ 111 (353)
T ss_pred ccccCce---EEEEEC------------------------CCCCCHHHHHHHHHH-----hc-C-CCCEE-EEECCeecC
Confidence 5555532 222111 024555554333221 12 1 12344 556788653
Q ss_pred cccchHHHHHHhhcCCceeEEeeeCCcccccceE
Q 007115 300 FKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGI 333 (617)
Q Consensus 300 ~~~DP~~lG~~~~~~~d~~~kvv~r~~~E~vG~i 333 (617)
..+ -.++-.+.+++++..+-+.+......-|++
T Consensus 112 ~~l-~~l~~~~~~~~~d~ti~~~~~~~~~~~g~~ 144 (353)
T TIGR01208 112 DGI-SRFVKSFEEKDYDALILLTKVRDPTAFGVA 144 (353)
T ss_pred ccH-HHHHHHHHhcCCCcEEEEEECCChhhCeEE
Confidence 222 235666777888877666653222344643
No 48
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.37 E-value=0.00048 Score=69.84 Aligned_cols=67 Identities=22% Similarity=0.321 Sum_probs=58.0
Q ss_pred eEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhC
Q 007115 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 220 (617)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~ 220 (617)
...|+||.|.|+|||.+.||.++.++ |+++++.++++|... ..--.+|.|+....+....|+.++
T Consensus 4 ~kavILAAG~GsRlg~~~PK~Lvev~---gr~ii~~~i~~L~~~------------gi~e~vvV~~g~~~~lve~~l~~~ 68 (239)
T COG1213 4 MKAVILAAGFGSRLGPDIPKALVEVG---GREIIYRTIENLAKA------------GITEFVVVTNGYRADLVEEFLKKY 68 (239)
T ss_pred eeEEEEecccccccCCCCCchhhhcC---CeEeHHHHHHHHHHc------------CCceEEEEeccchHHHHHHHHhcC
Confidence 35789999999999999999999996 999999998888643 134579999999999999999998
Q ss_pred CC
Q 007115 221 SY 222 (617)
Q Consensus 221 ~~ 222 (617)
++
T Consensus 69 ~~ 70 (239)
T COG1213 69 PF 70 (239)
T ss_pred Cc
Confidence 75
No 49
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=97.32 E-value=0.00023 Score=72.11 Aligned_cols=65 Identities=26% Similarity=0.317 Sum_probs=50.5
Q ss_pred eEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
|++|+||||.|+|||.+.||..+++. |++++++.++.+.+... .=-++|..+....+.+++++.+
T Consensus 1 V~aIilAaG~G~R~g~~~pKQf~~l~---Gkpvl~~tl~~f~~~~~-----------i~~Ivvv~~~~~~~~~~~~~~~ 65 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGSGIPKQFLELG---GKPVLEYTLEAFLASPE-----------IDEIVVVVPPEDIDYVEELLSK 65 (221)
T ss_dssp EEEEEEESS-STCCTSSS-GGGSEET---TEEHHHHHHHHHHTTTT-----------ESEEEEEESGGGHHHHHHHHHH
T ss_pred CEEEEeCCccchhcCcCCCCeeeEEC---CeEeHHHHHHHHhcCCC-----------CCeEEEEecchhHHHHHHhhcC
Confidence 68999999999999999999999995 99999999998864311 1235666677777888888877
No 50
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=97.30 E-value=0.0053 Score=67.70 Aligned_cols=62 Identities=23% Similarity=0.327 Sum_probs=48.3
Q ss_pred EEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 142 avvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
-+|+||||.||||+.+.||.++|+. |++++++.++.+.+. + .-.++|.++.. .+.+.+++.+
T Consensus 2 ~aiIlAaG~g~R~~~~~pK~l~~i~---gkpli~~~l~~l~~~----g--------~~~iiiv~~~~-~~~i~~~~~~ 63 (451)
T TIGR01173 2 SVVILAAGKGTRMKSDLPKVLHPLA---GKPMLEHVIDAARAL----G--------PQKIHVVYGHG-AEQVRKALAN 63 (451)
T ss_pred eEEEEcCCCCcccCCCCchhhceeC---CccHHHHHHHHHHhC----C--------CCeEEEEECCC-HHHHHHHhcC
Confidence 4689999999999988899999995 999999999888642 1 22456777754 5667777764
No 51
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=97.20 E-value=0.0045 Score=61.81 Aligned_cols=133 Identities=16% Similarity=0.112 Sum_probs=82.1
Q ss_pred EEEEcCCcCCcCC---ccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
+|+||||.|+||+ ...||.++|+. |++++++.++.+.+. + --.++|.++..-.+.+++++++
T Consensus 3 aVILAgG~g~R~~plt~~~pK~Llpv~---g~pli~~~l~~l~~~----g--------~~~iivv~~~~~~~~i~~~l~~ 67 (214)
T cd04198 3 AVILAGGGGSRLYPLTDNIPKALLPVA---NKPMIWYPLDWLEKA----G--------FEDVIVVVPEEEQAEISTYLRS 67 (214)
T ss_pred EEEEeCCCCCcCCccccCCCcccCEEC---CeeHHHHHHHHHHHC----C--------CCeEEEEECHHHHHHHHHHHHh
Confidence 5779999999997 47899999996 999999999888752 2 1245666765555678888876
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 007115 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (617)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~ 299 (617)
+.+ ... . ...... . ....+-|.|+........ + .+.+.+.+.|.+..
T Consensus 68 ~~~-~~~--------~---------~~~~~~--~----~~~~~~gt~~al~~~~~~-----i----~~d~lv~~~D~i~~ 114 (214)
T cd04198 68 FPL-NLK--------Q---------KLDEVT--I----VLDEDMGTADSLRHIRKK-----I----KKDFLVLSCDLITD 114 (214)
T ss_pred ccc-ccC--------c---------ceeEEE--e----cCCCCcChHHHHHHHHhh-----c----CCCEEEEeCccccc
Confidence 421 000 0 000111 0 012367888877766542 1 24466777776432
Q ss_pred cccchHHHHHHhhcCCceeEEeeeC
Q 007115 300 FKAIPASLGVSATKQYHVNSLAVPR 324 (617)
Q Consensus 300 ~~~DP~~lG~~~~~~~d~~~kvv~r 324 (617)
... -.++-.+..+++.+.+-+.+.
T Consensus 115 ~~l-~~~l~~h~~~~~~~t~~~~~~ 138 (214)
T cd04198 115 LPL-IELVDLHRSHDASLTVLLYPP 138 (214)
T ss_pred cCH-HHHHHHHhccCCcEEEEEecc
Confidence 222 345566667777777655553
No 52
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=97.17 E-value=0.00062 Score=66.91 Aligned_cols=61 Identities=28% Similarity=0.416 Sum_probs=47.3
Q ss_pred EEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 142 avvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
..|+||||.|||||. .||.++|+. |++++++.++.+.... .-.+++.++. .++.++.++++
T Consensus 2 ~aIILAgG~gsRmg~-~~K~Ll~i~---GkplI~~vi~~l~~~~------------i~~I~Vv~~~-~~~~~~~~l~~ 62 (183)
T TIGR00454 2 DALIMAGGKGTRLGG-VEKPLIEVC---GRCLIDHVLSPLLKSK------------VNNIIIATSP-HTPKTEEYINS 62 (183)
T ss_pred eEEEECCccCccCCC-CCceEeEEC---CEEHHHHHHHHHHhCC------------CCEEEEEeCC-CHHHHHHHHhh
Confidence 568999999999975 799999995 9999999999986431 1235666665 45678888864
No 53
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=97.12 E-value=0.0095 Score=64.00 Aligned_cols=197 Identities=17% Similarity=0.198 Sum_probs=102.9
Q ss_pred EEEEcCCcCCcCCc---cCCcccCCcccCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007115 143 FVLVAGGLGERLGY---NGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (617)
Q Consensus 143 vvlLaGGlGTRLG~---~~pK~~lpv~~~~gk-s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (617)
+|+||||.||||+- +.||.++|+. ++ +++++.++.+... + --.++|.+. ...+.+.++|.
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~---g~~pli~~~l~~l~~~----g--------i~~i~iv~~-~~~~~i~~~~~ 64 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFG---GKYRIIDFPLSNCINS----G--------IRRIGVLTQ-YKSHSLNRHIQ 64 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceec---ceeeEeeehhhhhhhc----C--------CceEEEEec-cChHHHHHHHH
Confidence 38999999999973 6899999996 88 7999998888653 1 123455555 45556888887
Q ss_pred hCCCCCCCC---CcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhH-hhhhcChhHHHHHcCceEEEEEeC
Q 007115 219 SNSYFGMKP---TQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHA-LLYSSGLLKEWHDAGLKWVLFFQD 294 (617)
Q Consensus 219 ~~~~FGl~~---~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~-aL~~sG~ld~l~~~G~eyi~v~~v 294 (617)
+. +++.. ..+.++ |. . ....-...|-|.|+... ++. .+....-+++.+.+-
T Consensus 65 ~~--~~~~~~~~~~~~~~-----~~----~--------~~~~~~~~~~Gt~~al~~a~~------~~~~~~~~~~lv~~g 119 (361)
T TIGR02091 65 RG--WDFDGFIDGFVTLL-----PA----Q--------QRESGTDWYQGTADAVYQNLD------LIEDYDPEYVLILSG 119 (361)
T ss_pred hc--cCccCccCCCEEEe-----CC----c--------ccCCCCccccCcHHHHHHHHH------HHHhcCCCEEEEecC
Confidence 52 22221 011110 00 0 00001124567665443 332 222223467788888
Q ss_pred CCccccccchHHHHHHhhcCCceeEEeeeC--CcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCC
Q 007115 295 TNGLLFKAIPASLGVSATKQYHVNSLAVPR--KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETG 372 (617)
Q Consensus 295 DN~L~~~~DP~~lG~~~~~~~d~~~kvv~r--~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~g 372 (617)
|++..... -.++-.+..++.+..+-+.+. ......|.+.. +.+|+ + .++.|.+.. +.....+ .+
T Consensus 120 D~l~~~~l-~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~--d~~~~--v--~~~~ekp~~------~~~~~~~-~~ 185 (361)
T TIGR02091 120 DHIYKMDY-EKMLDYHIESGADVTIACIPVPRKEASRFGVMQV--DEDGR--I--VDFEEKPAN------PPSIPGM-PD 185 (361)
T ss_pred CEEEcCCH-HHHHHHHHHcCCCEEEEEEecChHhcccccEEEE--CCCCC--E--EEEEECCCC------ccccccc-cc
Confidence 98422222 234555556666554433332 23344565543 23343 3 445443211 1111000 01
Q ss_pred CCCCccceeeeeeehhhhHHHHhh
Q 007115 373 YSPFPGNINQLILELGPYMEELKK 396 (617)
Q Consensus 373 f~~f~gNinn~~~~L~~~~~~l~~ 396 (617)
. +..|+..+.|+-+.+.+.++.
T Consensus 186 ~--~~~~~Giyi~~~~~l~~~l~~ 207 (361)
T TIGR02091 186 F--ALASMGIYIFDKDVLKELLEE 207 (361)
T ss_pred c--cEEeeeEEEEcHHHHHHHHHH
Confidence 1 134899999998765555543
No 54
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=97.10 E-value=0.0011 Score=70.04 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=50.2
Q ss_pred ceEEEEEcCCcCCcCC---ccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 007115 140 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (617)
Q Consensus 140 kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~ 216 (617)
.+-+|+||||.||||. ...||.++|+. |++++++.++.+... + .--++|.|+ +..+.+.+|
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKpLvpV~---gkPiI~~vl~~l~~~----G--------i~~ivivv~-~~~~~i~~~ 66 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIV---DKPMIQYIVDEIVAA----G--------IKEIVLVTH-ASKNAVENH 66 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCceeeEEC---CEEHHHHHHHHHHHC----C--------CCEEEEEec-CChHHHHHH
Confidence 4678999999999997 47899999996 999999999988743 2 123455555 577789999
Q ss_pred HHh
Q 007115 217 LES 219 (617)
Q Consensus 217 l~~ 219 (617)
|..
T Consensus 67 ~~~ 69 (297)
T TIGR01105 67 FDT 69 (297)
T ss_pred Hhc
Confidence 964
No 55
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=97.10 E-value=0.00075 Score=68.09 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=50.2
Q ss_pred eEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhC
Q 007115 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 220 (617)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~ 220 (617)
+++|+||||.|+|||.+.||.++++. |++++++.++++.... ..-.++|.|+........++++++
T Consensus 3 ~~~iIlAaG~g~R~g~~~~K~l~~l~---gkpll~~~i~~~~~~~-----------~~~~ivVv~~~~~~~~~~~~~~~~ 68 (230)
T PRK13385 3 YELIFLAAGQGKRMNAPLNKMWLDLV---GEPIFIHALRPFLADN-----------RCSKIIIVTQAQERKHVQDLMKQL 68 (230)
T ss_pred eEEEEECCeeccccCCCCCcceeEEC---CeEHHHHHHHHHHcCC-----------CCCEEEEEeChhhHHHHHHHHHhc
Confidence 68899999999999988899999995 9999999999876431 012466777665555566666653
No 56
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.08 E-value=0.023 Score=63.04 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=36.0
Q ss_pred eEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHH
Q 007115 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (617)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~ 183 (617)
+.+|+||||.||||+...||.++|+. |++++++.++++..
T Consensus 3 ~~avIlAaG~g~Rl~~~~pK~ll~i~---Gkpli~~~l~~l~~ 42 (458)
T PRK14354 3 RYAIILAAGKGTRMKSKLPKVLHKVC---GKPMVEHVVDSVKK 42 (458)
T ss_pred ceEEEEeCCCCcccCCCCChhhCEeC---CccHHHHHHHHHHh
Confidence 46899999999999988999999996 99999999998863
No 57
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=97.00 E-value=0.0011 Score=68.47 Aligned_cols=66 Identities=23% Similarity=0.297 Sum_probs=48.7
Q ss_pred cceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007115 139 KNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (617)
Q Consensus 139 ~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (617)
.++++|+||||.|+|||.+.||.++++. |++++++.++.+.... + .=.++|.++....+..++.++
T Consensus 23 ~~i~aIILAAG~gsRmg~~~pKqll~l~---Gkpll~~tl~~~~~~~---~--------i~~IvVV~~~~~~~~~~~~~~ 88 (252)
T PLN02728 23 KSVSVILLAGGVGKRMGANMPKQYLPLL---GQPIALYSLYTFARMP---E--------VKEIVVVCDPSYRDVFEEAVE 88 (252)
T ss_pred CceEEEEEcccccccCCCCCCcceeEEC---CeEHHHHHHHHHHhCC---C--------CCeEEEEeCHHHHHHHHHHHH
Confidence 3688999999999999988999999995 9999999988876531 1 123455555544555555554
No 58
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.98 E-value=0.0012 Score=63.12 Aligned_cols=38 Identities=32% Similarity=0.534 Sum_probs=34.0
Q ss_pred eEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHH
Q 007115 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (617)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~ 183 (617)
+++|+||||.|+|||. ||.++|+. |++++++.++++..
T Consensus 1 ~~~vIlAgG~s~R~g~--~K~l~~~~---g~~li~~~i~~l~~ 38 (186)
T cd04182 1 IAAIILAAGRSSRMGG--NKLLLPLD---GKPLLRHALDAALA 38 (186)
T ss_pred CeEEEECCCCCCCCCC--CceeCeeC---CeeHHHHHHHHHHh
Confidence 4689999999999984 99999995 99999999998864
No 59
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.0019 Score=69.97 Aligned_cols=140 Identities=16% Similarity=0.186 Sum_probs=90.8
Q ss_pred eEEEEEcCCcCCcCC---ccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 007115 141 AAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (617)
Q Consensus 141 vavvlLaGGlGTRLG---~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l 217 (617)
+-+|+||||.||||- .+.||.++|+. ++++++++++.+.+. .+-=++++-.+..+.++++|
T Consensus 2 mkavILagG~GtRLrPlT~~~PKPllpI~---gkPii~~~l~~L~~~-------------Gv~eivi~~~y~~~~i~~~~ 65 (358)
T COG1208 2 MKAVILAGGYGTRLRPLTDDRPKPLLPIA---GKPLIEYVLEALAAA-------------GVEEIVLVVGYLGEQIEEYF 65 (358)
T ss_pred ceEEEEeCCccccccccccCCCcccceeC---CccHHHHHHHHHHHC-------------CCcEEEEEeccchHHHHHHH
Confidence 457899999999995 58999999997 999999999988642 45556777888889999999
Q ss_pred HhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCc
Q 007115 218 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNG 297 (617)
Q Consensus 218 ~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~ 297 (617)
.....+|++ |.+..|. .|-|.|+-...... ++ +.+-.++.+-|+.
T Consensus 66 ~d~~~~~~~---I~y~~e~------------------------~~lGTag~l~~a~~------~l--~~~~f~v~~GDv~ 110 (358)
T COG1208 66 GDGEGLGVR---ITYVVEK------------------------EPLGTAGALKNALD------LL--GGDDFLVLNGDVL 110 (358)
T ss_pred hcccccCCc---eEEEecC------------------------CcCccHHHHHHHHH------hc--CCCcEEEEECCee
Confidence 987555442 3322111 15555554443321 11 1166778888884
Q ss_pred cccccc-hHHHHHHhhcCCceeEEeeeC-CcccccceEE
Q 007115 298 LLFKAI-PASLGVSATKQYHVNSLAVPR-KAKEAIGGIT 334 (617)
Q Consensus 298 L~~~~D-P~~lG~~~~~~~d~~~kvv~r-~~~E~vG~i~ 334 (617)
- ..| -.++.++.+++....+-.+.- .+ ..-|++.
T Consensus 111 ~--~~dl~~l~~~~~~~~~~~~~~~~~~~~~-~~~Gvv~ 146 (358)
T COG1208 111 T--DLDLSELLEFHKKKGALATIALTRVLDP-SEFGVVE 146 (358)
T ss_pred e--ccCHHHHHHHHHhccCccEEEEEecCCC-CcCceEE
Confidence 3 333 346777777755444444442 33 4567554
No 60
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=96.95 E-value=0.018 Score=57.98 Aligned_cols=127 Identities=19% Similarity=0.183 Sum_probs=76.7
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
++.+|+||||.|+||+ ||.++|+. |++++++.++++.+. . .+.-++..+. ++.+.+++.+
T Consensus 1 ~~~~iIlA~g~s~R~~---~K~l~~i~---gkpll~~~l~~l~~~----~--------~i~~ivvv~~--~~~i~~~~~~ 60 (239)
T cd02517 1 KVIVVIPARYASSRLP---GKPLADIA---GKPMIQHVYERAKKA----K--------GLDEVVVATD--DERIADAVES 60 (239)
T ss_pred CEEEEEecCCCCCCCC---CCCCcccC---CcCHHHHHHHHHHhC----C--------CCCEEEEECC--cHHHHHHHHH
Confidence 4678999999999996 79999995 999999999988743 0 2333344433 4778888764
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 007115 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (617)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~ 299 (617)
+ |. . .+... + ..+.|.|++..++.. + ....+++.+.+.|+++.
T Consensus 61 ~---~~-----~--------~~~~~--------~------~~~~gt~~~~~~~~~------~-~~~~d~vlv~~gD~Pli 103 (239)
T cd02517 61 F---GG-----K--------VVMTS--------P------DHPSGTDRIAEVAEK------L-DADDDIVVNVQGDEPLI 103 (239)
T ss_pred c---CC-----E--------EEEcC--------c------ccCchhHHHHHHHHh------c-CCCCCEEEEecCCCCCC
Confidence 2 21 1 11110 0 113456666555422 1 11247888999999875
Q ss_pred cccc-hHHHHHHhhc-CCceeEEeee
Q 007115 300 FKAI-PASLGVSATK-QYHVNSLAVP 323 (617)
Q Consensus 300 ~~~D-P~~lG~~~~~-~~d~~~kvv~ 323 (617)
..-+ -.++-.+... +++++.-+++
T Consensus 104 ~~~~l~~l~~~~~~~~~~~~~~~~~~ 129 (239)
T cd02517 104 PPEMIDQVVAALKDDPGVDMATLATP 129 (239)
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence 4322 1233333334 5666555555
No 61
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=96.94 E-value=0.014 Score=65.66 Aligned_cols=195 Identities=19% Similarity=0.168 Sum_probs=100.8
Q ss_pred EEEEcCCcCCcCC----ccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007115 143 FVLVAGGLGERLG----YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (617)
Q Consensus 143 vvlLaGGlGTRLG----~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (617)
.|+||||.||||+ .+.||.++|+. .++|++|..++++..+ + .-..+|.|+..-.....+.++
T Consensus 3 ~vILAgG~GtRl~PlS~~~~PK~~l~l~--g~~~ll~~tl~~l~~~----~--------~~~iviv~~~~~~~~~~~~l~ 68 (468)
T TIGR01479 3 PVILAGGSGTRLWPLSRELYPKQFLALV--GDLTMLQQTLKRLAGL----P--------CSSPLVICNEEHRFIVAEQLR 68 (468)
T ss_pred EEEecCcccccCCccccCCCCCceeEcC--CCCcHHHHHHHHHhcC----C--------CcCcEEecCHHHHHHHHHHHH
Confidence 6899999999997 35799999985 3599999999987654 1 113446666544445566665
Q ss_pred hCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHH--cCceEEEEEeCCC
Q 007115 219 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHD--AGLKWVLFFQDTN 296 (617)
Q Consensus 219 ~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~--~G~eyi~v~~vDN 296 (617)
+. |++.. +++.. + .|-|-|..-.. .. ..+.+ .+=.++.|.+.|+
T Consensus 69 ~~---~~~~~------------------~~i~E---p-----~~~gTa~ai~~-aa----~~~~~~~~~~~~vlVl~~D~ 114 (468)
T TIGR01479 69 EI---GKLAS------------------NIILE---P-----VGRNTAPAIAL-AA----LLAARRNGEDPLLLVLAADH 114 (468)
T ss_pred Hc---CCCcc------------------eEEec---c-----cccCchHHHHH-HH----HHHHHHHCCCcEEEEecCce
Confidence 42 22111 12221 1 11222221111 00 11112 2345788999998
Q ss_pred ccccccc-hHHHHHH---hhcCCceeEEeeeCCcccccceEEEEecCC--CceeEEEEeecCCCHHHhhcCCCCCCCccC
Q 007115 297 GLLFKAI-PASLGVS---ATKQYHVNSLAVPRKAKEAIGGITRLTHAD--GRSMVINVEYNQLDPLLRATGFPDGDVNCE 370 (617)
Q Consensus 297 ~L~~~~D-P~~lG~~---~~~~~d~~~kvv~r~~~E~vG~i~~~~~~d--G~~~v~nVEYsel~~~l~~~~~~~g~l~~~ 370 (617)
++....+ -.++-.+ .+++..+.+-+.+..|.-.-|.+..-...+ +...| ..+-|.+..-.+.. .+.
T Consensus 115 ~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~~p~t~YGyI~~~~~~~~~~~~~V--~~f~EKP~~~~a~~----~l~-- 186 (468)
T TIGR01479 115 VITDEDAFQAAVKLAMPAAAEGKLVTFGIVPTHPETGYGYIRRGEPLAGEDVYQV--QRFVEKPDLATAQA----YLE-- 186 (468)
T ss_pred eecCHHHHHHHHHHHHHHHhcCCEEEEEecCCCCCCCceEEEeCCccCCCCceEE--eEEEECCChHHHHH----HHh--
Confidence 6542111 1122222 234554555555555666778775310001 21223 33334433211110 010
Q ss_pred CC-CCCCccceeeeeeehhhhHHHHhh
Q 007115 371 TG-YSPFPGNINQLILELGPYMEELKK 396 (617)
Q Consensus 371 ~g-f~~f~gNinn~~~~L~~~~~~l~~ 396 (617)
.| | ++ |+..+.|+.+.+.+.+++
T Consensus 187 ~g~~-~w--NsGif~~~~~~ll~~l~~ 210 (468)
T TIGR01479 187 SGDY-YW--NSGMFLFRASRYLAELKK 210 (468)
T ss_pred cCCe-EE--EeeEEEEEHHHHHHHHHH
Confidence 11 2 34 999999999888887765
No 62
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=96.92 E-value=0.0096 Score=59.59 Aligned_cols=123 Identities=18% Similarity=0.101 Sum_probs=77.2
Q ss_pred EEEEcCCcCCcCCc---cCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 143 vvlLaGGlGTRLG~---~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
+|+||||.||||+- ..||.++|+. |+++++..++.+... + .-.++|.|.. ..+...+++++
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~---g~~li~~~l~~l~~~----g--------i~~i~vv~~~-~~~~~~~~~~~ 64 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEIN---GKPLLERQIETLKEA----G--------IDDIVIVTGY-KKEQIEELLKK 64 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeEC---CEEHHHHHHHHHHHC----C--------CceEEEEecc-CHHHHHHHHhc
Confidence 47899999999974 5799999995 899999999887642 1 1134566654 56777777764
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 007115 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (617)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~ 299 (617)
. +| +.+ +. .. .+.|.|.++-+.+. ++.+ -+++.+.+.|++
T Consensus 65 ~--~~-----~~~----------------~~--~~----~~~~~g~~~s~~~~-----~~~~----~~~~lv~~~D~~-- 104 (229)
T cd02523 65 Y--PN-----IKF----------------VY--NP----DYAETNNIYSLYLA-----RDFL----DEDFLLLEGDVV-- 104 (229)
T ss_pred c--CC-----eEE----------------Ee--Cc----chhhhCcHHHHHHH-----HHHc----CCCEEEEeCCEe--
Confidence 3 11 111 11 00 01245554433222 1222 267888999994
Q ss_pred cccchHHHHHHhhcCCceeEEeee
Q 007115 300 FKAIPASLGVSATKQYHVNSLAVP 323 (617)
Q Consensus 300 ~~~DP~~lG~~~~~~~d~~~kvv~ 323 (617)
.++.++-.+.+.+.+..+-+.+
T Consensus 105 --~~~~~~~~~~~~~~~~~~~~~~ 126 (229)
T cd02523 105 --FDPSILERLLSSPADNAILVDK 126 (229)
T ss_pred --cCHHHHHHHHcCCCCCeEEEcc
Confidence 2556777777788887765554
No 63
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=96.86 E-value=0.0018 Score=60.92 Aligned_cols=55 Identities=25% Similarity=0.422 Sum_probs=42.8
Q ss_pred EEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 007115 143 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (617)
Q Consensus 143 vvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l 217 (617)
+|+||||.|+||| +||.++|+. |+|+++..++.+.... .=+++|.+.. +++.+++
T Consensus 1 ~vILa~G~s~Rmg--~~K~l~~i~---g~~li~~~l~~l~~~~------------~~~Ivvv~~~---~~~~~~~ 55 (160)
T PF12804_consen 1 AVILAAGKSSRMG--GPKALLPIG---GKPLIERVLEALREAG------------VDDIVVVTGE---EEIYEYL 55 (160)
T ss_dssp EEEEESSSCGGGT--SCGGGSEET---TEEHHHHHHHHHHHHT------------ESEEEEEEST---HHHHHHH
T ss_pred CEEECCcCcccCC--CCccceeEC---CccHHHHHHHHhhccC------------CceEEEecCh---HHHHHHH
Confidence 5899999999998 499999995 9999999999997661 1256777766 3444444
No 64
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=96.86 E-value=0.0021 Score=62.43 Aligned_cols=61 Identities=28% Similarity=0.373 Sum_probs=49.1
Q ss_pred EEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhC
Q 007115 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 220 (617)
Q Consensus 142 avvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~ 220 (617)
.+|+||||+|||||. .-|.++++ .|++++++.++.++. ... -+++-||.+|- .|++|+++-
T Consensus 2 ~~iiMAGGrGtRmg~-~EKPlleV---~GkpLI~~v~~al~~---~~d----------~i~v~isp~tp-~t~~~~~~~ 62 (177)
T COG2266 2 MAIIMAGGRGTRMGR-PEKPLLEV---CGKPLIDRVLEALRK---IVD----------EIIVAISPHTP-KTKEYLESV 62 (177)
T ss_pred ceEEecCCcccccCC-CcCcchhh---CCccHHHHHHHHHHh---hcC----------cEEEEeCCCCH-hHHHHHHhc
Confidence 579999999999996 67789998 599999998888765 332 36788888774 589998873
No 65
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=96.84 E-value=0.048 Score=60.65 Aligned_cols=63 Identities=19% Similarity=0.195 Sum_probs=48.0
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (617)
++.+|+||||.||||+...||.++|+. |+++++..++++.+. + .-.+++.++. ..+.+++++.
T Consensus 5 ~~~aiIlAaG~gtRl~~~~pK~l~~i~---gkpli~~~i~~l~~~----g--------i~~i~vv~~~-~~~~i~~~~~ 67 (456)
T PRK09451 5 AMSVVILAAGKGTRMYSDLPKVLHTLA---GKPMVQHVIDAANEL----G--------AQHVHLVYGH-GGDLLKQTLA 67 (456)
T ss_pred CceEEEEcCCCCCcCCCCCChhcceeC---ChhHHHHHHHHHHhc----C--------CCcEEEEECC-CHHHHHHhhc
Confidence 578899999999999988899999995 999999999988532 1 1245666664 4455666654
No 66
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=96.77 E-value=0.045 Score=54.16 Aligned_cols=133 Identities=14% Similarity=0.091 Sum_probs=77.6
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
++++|+||||.|+||+ .|.++|+. |++++++.++++.+. + .+.-++.++ +++.+.+++++
T Consensus 1 ~~~~iIlA~G~s~R~~---~K~l~~l~---Gkpll~~~l~~l~~~----~--------~~~~IvV~~--~~~~i~~~~~~ 60 (223)
T cd02513 1 KILAIIPARGGSKGIP---GKNIRPLG---GKPLIAWTIEAALES----K--------LFDRVVVST--DDEEIAEVARK 60 (223)
T ss_pred CeEEEEecCCCCCCCC---CcccchhC---CccHHHHHHHHHHhC----C--------CCCEEEEEC--CcHHHHHHHHH
Confidence 5789999999999996 58999985 999999999998753 1 122233333 34666776664
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCch-hhHhhhhcChhHHHHHc--CceEEEEEeCCC
Q 007115 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD-VHALLYSSGLLKEWHDA--GLKWVLFFQDTN 296 (617)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGd-i~~aL~~sG~ld~l~~~--G~eyi~v~~vDN 296 (617)
+ |.. ..+ + . . + ....-..|-++ +..++ +.+... +.+++.+.+.|.
T Consensus 61 ~---~~~----~~~-------~-~-~---------~-~~~~~~~~~~~~i~~~l------~~l~~~~~~~d~vlv~~~D~ 108 (223)
T cd02513 61 Y---GAE----VPF-------L-R-P---------A-ELATDTASSIDVILHAL------DQLEELGRDFDIVVLLQPTS 108 (223)
T ss_pred h---CCC----cee-------e-C-C---------h-HHCCCCCCcHHHHHHHH------HHHHHhCCCCCEEEEeCCCC
Confidence 3 210 011 1 0 0 0 00011112222 33332 333332 368999999999
Q ss_pred ccccccch-HHHHHHhhcCCceeEEeeeC
Q 007115 297 GLLFKAIP-ASLGVSATKQYHVNSLAVPR 324 (617)
Q Consensus 297 ~L~~~~DP-~~lG~~~~~~~d~~~kvv~r 324 (617)
++...-+- .++..+..++.+..+-+++.
T Consensus 109 P~i~~~~i~~~i~~~~~~~~~~~~~~~~~ 137 (223)
T cd02513 109 PLRSAEDIDEAIELLLSEGADSVFSVTEF 137 (223)
T ss_pred CcCCHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 98754332 24455555677877777763
No 67
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=96.71 E-value=0.061 Score=54.11 Aligned_cols=59 Identities=22% Similarity=0.189 Sum_probs=44.8
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccc-cEEEecCccchHHHHHHHH
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLE 218 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~i-Pl~IMTS~~T~~~T~~~l~ 218 (617)
++++|+||+|.++||+ +|.++|+. |++++++.++++.+.. .+ .++|-| . ++.+.++++
T Consensus 2 ~~~aiIlA~g~s~R~~---~K~l~~i~---GkPli~~~i~~l~~~~------------~~~~ivv~t-~--~~~i~~~~~ 60 (238)
T PRK13368 2 KVVVVIPARYGSSRLP---GKPLLDIL---GKPMIQHVYERAAQAA------------GVEEVYVAT-D--DQRIEDAVE 60 (238)
T ss_pred cEEEEEecCCCCCCCC---CCccCccC---CcCHHHHHHHHHHhcC------------CCCeEEEEC-C--hHHHHHHHH
Confidence 4788999999999995 59999995 9999999999887530 12 234444 2 477888887
Q ss_pred h
Q 007115 219 S 219 (617)
Q Consensus 219 ~ 219 (617)
+
T Consensus 61 ~ 61 (238)
T PRK13368 61 A 61 (238)
T ss_pred H
Confidence 5
No 68
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=96.69 E-value=0.0028 Score=61.17 Aligned_cols=52 Identities=23% Similarity=0.424 Sum_probs=40.5
Q ss_pred EEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchH
Q 007115 143 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHS 211 (617)
Q Consensus 143 vvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~ 211 (617)
+|+||||.|+||| .||.++|+. |++++++.++++++. + .-+++|.|+...++
T Consensus 2 ~iIla~G~s~R~g--~~K~ll~~~---g~pll~~~i~~l~~~----~--------~~~iivv~~~~~~~ 53 (188)
T TIGR03310 2 AIILAAGLSSRMG--QNKLLLPYK---GKTILEHVVDNALRL----F--------FDEVILVLGHEADE 53 (188)
T ss_pred eEEECCCCcccCC--CCceecccC---CeeHHHHHHHHHHHc----C--------CCcEEEEeCCcHHH
Confidence 6899999999998 699999995 999999999888643 1 12566777765433
No 69
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=96.59 E-value=0.0047 Score=64.00 Aligned_cols=141 Identities=19% Similarity=0.201 Sum_probs=90.4
Q ss_pred EEEEcCCcCCcCC---ccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
-|+||||.||||- ...||.++||. +|+.+++-++++... + .--+.|.++..+-...++++..
T Consensus 3 giILAgG~GTRL~PlT~~~~KqLlpV~---~KPmi~y~l~~L~~a----G--------I~dI~II~~~~~~~~~~~llGd 67 (286)
T COG1209 3 GVILAGGSGTRLRPLTRVVPKQLLPVY---DKPMIYYPLETLMLA----G--------IRDILIVVGPEDKPTFKELLGD 67 (286)
T ss_pred cEEecCcCccccccccccCCcccceec---CcchhHhHHHHHHHc----C--------CceEEEEecCCchhhhhhhhcC
Confidence 4789999999984 68999999996 999999999998643 2 2246777778788888888888
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 007115 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (617)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~ 299 (617)
-..||++ +++-.| -.|.|=++.+.. -+++. |-+-..++--||++-
T Consensus 68 gs~~gv~---itY~~Q------------------------~~p~GlA~Av~~------a~~fv--~~~~f~l~LGDNi~~ 112 (286)
T COG1209 68 GSDFGVD---ITYAVQ------------------------PEPDGLAHAVLI------AEDFV--GDDDFVLYLGDNIFQ 112 (286)
T ss_pred ccccCcc---eEEEec------------------------CCCCcHHHHHHH------HHhhc--CCCceEEEecCceec
Confidence 7888874 333222 245666655542 23332 334455777899877
Q ss_pred cccchHHHHHHhhcCCceeEEeeeCCcccccceEE
Q 007115 300 FKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGIT 334 (617)
Q Consensus 300 ~~~DP~~lG~~~~~~~d~~~kvv~r~~~E~vG~i~ 334 (617)
.- -..++-.+.+.+.+...-+.+=...++-||+-
T Consensus 113 ~~-l~~~~~~~~~~~~ga~i~~~~V~dP~rfGV~e 146 (286)
T COG1209 113 DG-LSELLEHFAEEGSGATILLYEVDDPSRYGVVE 146 (286)
T ss_pred cC-hHHHHHHHhccCCCcEEEEEEcCCcccceEEE
Confidence 63 34455555543333222222212335566544
No 70
>PRK10122 GalU regulator GalF; Provisional
Probab=96.58 E-value=0.0038 Score=65.95 Aligned_cols=64 Identities=19% Similarity=0.205 Sum_probs=50.7
Q ss_pred cceEEEEEcCCcCCcCC---ccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHH
Q 007115 139 KNAAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (617)
Q Consensus 139 ~kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~ 215 (617)
.++.+|+||||.||||. ...||.++|+. |++++++.++.+... + .-.++|++. ...+.+.+
T Consensus 2 ~~mkavIlAaG~GtRl~PlT~~~PK~llpi~---gkpiI~~~l~~l~~~----G--------i~~i~iv~~-~~~~~i~~ 65 (297)
T PRK10122 2 TNLKAVIPVAGLGMHMLPATKAIPKEMLPIV---DKPMIQYIVDEIVAA----G--------IKEIVLVTH-ASKNAVEN 65 (297)
T ss_pred CceEEEEECCcCCcccCcccCCCCceeeEEC---CEEHHHHHHHHHHHC----C--------CCEEEEEcC-CChHHHHH
Confidence 36788999999999997 57899999996 999999999988653 2 123455554 57788999
Q ss_pred HHH
Q 007115 216 LLE 218 (617)
Q Consensus 216 ~l~ 218 (617)
+|.
T Consensus 66 ~~~ 68 (297)
T PRK10122 66 HFD 68 (297)
T ss_pred HHh
Confidence 986
No 71
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=96.54 E-value=0.036 Score=61.77 Aligned_cols=259 Identities=18% Similarity=0.185 Sum_probs=140.4
Q ss_pred cCCcccCCcccC---CCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhC-----CCCCCCCC
Q 007115 157 NGIKVALPAETT---TGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN-----SYFGMKPT 228 (617)
Q Consensus 157 ~~pK~~lpv~~~---~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~-----~~FGl~~~ 228 (617)
..|||+||...- ....|-+..+|-.+ |.. .+ ..+-+=.-.|..-.+.-++.+++. ..||. +=
T Consensus 165 ~lPKGLl~FH~Y~~~~rTp~EEHL~Eaa~-----Ya~--~~--g~~~lHFTVS~eH~~~F~~~~~~~~~~~e~~~~v-~f 234 (513)
T PF14134_consen 165 NLPKGLLPFHKYPDGIRTPFEEHLVEAAL-----YAK--SN--GKANLHFTVSPEHLDLFKKEVEEVKPKYEKKYGV-KF 234 (513)
T ss_pred CCCceeeecccCCCCCcCcHHHHHHHHHH-----HHh--cC--CeEEEEEeeCHHHHHHHHHHHHHHHHHHHHhhCc-eE
Confidence 689999998632 23334444444433 221 11 133333444554333333333321 22333 23
Q ss_pred cEEEEEeCc---eeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccccccch-
Q 007115 229 QVKLLKQEK---VACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIP- 304 (617)
Q Consensus 229 ~V~~F~Q~~---~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~~~~DP- 304 (617)
+|.|=.|.. -.++ +.+..|.- .+.+++..-|.|||.+..-| .+..-..|||=||||+.....-.
T Consensus 235 ~IsfS~Qk~sTDTIAv-~~dN~pFR--~~dG~LlFRPgGHGALieNL---------N~ldaDiIFIKNIDNVvpd~~k~~ 302 (513)
T PF14134_consen 235 EISFSEQKPSTDTIAV-DPDNTPFR--NEDGSLLFRPGGHGALIENL---------NDLDADIIFIKNIDNVVPDRLKEE 302 (513)
T ss_pred EEEecccCCCCCeeEE-CCCCCccC--CCCCCEEeCCCcchHHHhhh---------ccccCCEEEEeCccccCCcccchh
Confidence 566666642 3345 46788887 55678999999999876554 44567889999999975322111
Q ss_pred ------HHHHHHh------------------------------hcCC------------------------ceeEEeee-
Q 007115 305 ------ASLGVSA------------------------------TKQY------------------------HVNSLAVP- 323 (617)
Q Consensus 305 ------~~lG~~~------------------------------~~~~------------------------d~~~kvv~- 323 (617)
++.|..+ ++.+ +==+.||-
T Consensus 303 t~~yKk~LaG~L~~lQ~~~F~yl~~L~~~~~~~~~l~ei~~Fl~~~L~~~~~~~~~~~~~~~~~~yL~~kLnRPiRVCGM 382 (513)
T PF14134_consen 303 TVKYKKILAGKLLELQEKIFKYLKLLDKGKYSEEELEEIKDFLEEELNIKLPDDFKKLSDEEKIEYLKEKLNRPIRVCGM 382 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCcHHHHhhCHHHHHHHHHHHcCCCceeeec
Confidence 1112111 0000 00123554
Q ss_pred -CCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCccceeeeeeehhhhHHHHhhcCCccc
Q 007115 324 -RKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIK 402 (617)
Q Consensus 324 -r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gNinn~~~~L~~~~~~l~~~~~~l~ 402 (617)
|+.+|+-||=-.+.+.||...+..||=++++..-+.+. .-+...|.| |---+.+.++.|+ ...-.|+
T Consensus 383 VkNeGEPGGGPFwv~~~dG~~SLQIvEssQId~~~~~q~---~if~~~THF-----NPVDLVCgvkdyk----G~kFdL~ 450 (513)
T PF14134_consen 383 VKNEGEPGGGPFWVKNEDGTVSLQIVESSQIDMSNPEQK---EIFKNSTHF-----NPVDLVCGVKDYK----GEKFDLP 450 (513)
T ss_pred cccCCCCCCCCeEEECCCCCEeeeeehhhhcCCCCHHHH---HHHHcCCCC-----CccceEeeccCCC----CCcCCch
Confidence 78899999988888899986554599888854332221 011222222 5556677766543 1122466
Q ss_pred cccCCcc-------cCCCCCcccCcch-hhhhhcccccCCCC---CCceeEEEecCCceeecccCCCccc
Q 007115 403 EFVNPKY-------KDASKTSFKSSTR-LECMMQDYPKTLPP---SAKVGFTVMDTWLAYAPVKNNPEDA 461 (617)
Q Consensus 403 ~~vnpk~-------~d~~~~~~~~~~k-LE~~m~D~~~~f~~---~~~~g~~~V~R~~~FsPvKN~~~~~ 461 (617)
.+|+|+. .++ +.+| ||. |.+-.. .=...|++||= ..|.|||+..|+.
T Consensus 451 ~fvD~~tgFIs~KSk~G------k~LKAlEL-----PGLWNGaMa~WnTvFVEVPl-~TFNPVKTVnDLL 508 (513)
T PF14134_consen 451 DFVDPNTGFISEKSKNG------KELKALEL-----PGLWNGAMADWNTVFVEVPL-ITFNPVKTVNDLL 508 (513)
T ss_pred hccCCCCceeeecCCCC------ccchhhcc-----CCcccchhcCCceEEEEecc-ccCCCccchhhhc
Confidence 6777752 221 1222 332 111100 01346789996 9999999999864
No 72
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=96.48 E-value=0.0024 Score=63.19 Aligned_cols=39 Identities=31% Similarity=0.477 Sum_probs=35.1
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCC-cchHHHHHHHHHH
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTG-TCFLQNYIECILA 183 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g-ks~lql~~~~i~~ 183 (617)
+++.|+||||+++||| .+|.++|+. | +|+++..++++..
T Consensus 8 ~i~~vILAgG~s~RmG--~~K~ll~~~---g~~~ll~~~i~~l~~ 47 (196)
T PRK00560 8 NIPCVILAGGKSSRMG--ENKALLPFG---SYSSLLEYQYTRLLK 47 (196)
T ss_pred CceEEEECCcccccCC--CCceEEEeC---CCCcHHHHHHHHHHH
Confidence 7899999999999998 689999995 8 9999999998863
No 73
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=96.46 E-value=0.0034 Score=60.41 Aligned_cols=37 Identities=30% Similarity=0.399 Sum_probs=33.3
Q ss_pred EEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHH
Q 007115 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (617)
Q Consensus 142 avvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~ 183 (617)
+.|+||||.|+|||. ||.++|+. |+++++..++++..
T Consensus 2 ~~iILAgG~s~Rmg~--~K~ll~~~---g~~ll~~~i~~l~~ 38 (181)
T cd02503 2 TGVILAGGKSRRMGG--DKALLELG---GKPLLEHVLERLKP 38 (181)
T ss_pred cEEEECCCccccCCC--CceeeEEC---CEEHHHHHHHHHHh
Confidence 579999999999985 99999995 99999999998864
No 74
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=96.29 E-value=0.0034 Score=60.71 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=33.5
Q ss_pred eEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHH
Q 007115 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECIL 182 (617)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~ 182 (617)
+++|+||||.|||||- .||.++|+. |+|+++..++.+.
T Consensus 1 ~~~iILAgG~s~Rmg~-~~K~l~~i~---g~pll~~~l~~l~ 38 (186)
T TIGR02665 1 ISGVILAGGRARRMGG-RDKGLVELG---GKPLIEHVLARLR 38 (186)
T ss_pred CeEEEEcCCccccCCC-CCCceeEEC---CEEHHHHHHHHHH
Confidence 4689999999999983 499999995 9999999999885
No 75
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=96.21 E-value=0.0073 Score=61.74 Aligned_cols=62 Identities=21% Similarity=0.198 Sum_probs=47.9
Q ss_pred EEEEEcCCcCCcCCc---cCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007115 142 AFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (617)
Q Consensus 142 avvlLaGGlGTRLG~---~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (617)
-+|+||||.||||+- ..||.++|+. |++++++.++.+... + .-.++|+|+.. .+.+.++|.
T Consensus 2 ~avIlAaG~gtRl~plt~~~pK~llpi~---g~pli~~~l~~l~~~----g--------i~~v~iv~~~~-~~~i~~~~~ 65 (260)
T TIGR01099 2 KAVIPAAGLGTRFLPATKAIPKEMLPIV---DKPLIQYVVEEAVEA----G--------IEDILIVTGRG-KRAIEDHFD 65 (260)
T ss_pred eEEEEcccCcccCCCcccCCCceeEEEC---CEEHHHHHHHHHHhC----C--------CCEEEEEeCCc-HHHHHHHhc
Confidence 468999999999964 7899999996 899999998887642 2 12456666654 667888887
Q ss_pred h
Q 007115 219 S 219 (617)
Q Consensus 219 ~ 219 (617)
+
T Consensus 66 ~ 66 (260)
T TIGR01099 66 T 66 (260)
T ss_pred c
Confidence 3
No 76
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=96.17 E-value=0.0034 Score=62.42 Aligned_cols=39 Identities=31% Similarity=0.408 Sum_probs=34.9
Q ss_pred EEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHH
Q 007115 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (617)
Q Consensus 142 avvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~ 183 (617)
++|+||||.|||||.+.||.++++. |++++++.++++..
T Consensus 1 ~aiIlAaG~s~R~~~~~~K~l~~l~---gkpll~~~l~~l~~ 39 (217)
T TIGR00453 1 SAVIPAAGRGTRFGSGVPKQYLELG---GRPLLEHTLDAFLA 39 (217)
T ss_pred CEEEEcCcccccCCCCCCccEeEEC---CeEHHHHHHHHHhc
Confidence 3689999999999987899999995 99999999998864
No 77
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=96.16 E-value=0.0052 Score=62.67 Aligned_cols=65 Identities=22% Similarity=0.286 Sum_probs=53.0
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (617)
++.+|++|+|.|||||.+.||-.+++. |+++|++.++.++.... --.++|.++..-+....++.+
T Consensus 4 ~~~~vilAaG~G~R~~~~~pKq~l~l~---g~pll~~tl~~f~~~~~-----------i~~Ivvv~~~~~~~~~~~~~~ 68 (230)
T COG1211 4 MVSAVILAAGFGSRMGNPVPKQYLELG---GRPLLEHTLEAFLESPA-----------IDEIVVVVSPEDDPYFEKLPK 68 (230)
T ss_pred eEEEEEEcCccccccCCCCCceEEEEC---CEEehHHHHHHHHhCcC-----------CCeEEEEEChhhhHHHHHhhh
Confidence 578999999999999999999999995 99999999998875522 124677777767777777765
No 78
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=96.10 E-value=0.0043 Score=61.49 Aligned_cols=40 Identities=33% Similarity=0.443 Sum_probs=35.7
Q ss_pred eEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHH
Q 007115 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (617)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~ 183 (617)
+++|+||||.|+|||...||.++|+. |++++++.++++..
T Consensus 1 ~~~vILAaG~s~R~~~~~~K~l~~i~---Gkpll~~~i~~l~~ 40 (218)
T cd02516 1 VAAIILAAGSGSRMGADIPKQFLELG---GKPVLEHTLEAFLA 40 (218)
T ss_pred CEEEEECCcccccCCCCCCcceeEEC---CeEHHHHHHHHHhc
Confidence 46799999999999977899999995 99999999998864
No 79
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=96.07 E-value=0.0091 Score=61.32 Aligned_cols=62 Identities=23% Similarity=0.190 Sum_probs=47.3
Q ss_pred EEEEEcCCcCCcCCc---cCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007115 142 AFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (617)
Q Consensus 142 avvlLaGGlGTRLG~---~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (617)
-+|+||||.||||.- ..||.++|+. |++++++.++.+.+. + .-.++|.|. ...+.+.++|.
T Consensus 2 kaiIlAaG~gtRl~plt~~~pK~llpv~---gkpli~~~l~~l~~~----g--------i~~i~iv~~-~~~~~i~~~~~ 65 (267)
T cd02541 2 KAVIPAAGLGTRFLPATKAIPKEMLPIV---DKPVIQYIVEEAVAA----G--------IEDIIIVTG-RGKRAIEDHFD 65 (267)
T ss_pred eEEEEcCCCCccCCCcccCCCceeeEEC---CEEHHHHHHHHHHHC----C--------CCEEEEEeC-CchHHHHHHhC
Confidence 368999999999973 7899999996 999999999988642 2 113455555 45677888886
Q ss_pred h
Q 007115 219 S 219 (617)
Q Consensus 219 ~ 219 (617)
.
T Consensus 66 ~ 66 (267)
T cd02541 66 R 66 (267)
T ss_pred C
Confidence 4
No 80
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=96.07 E-value=0.0049 Score=61.87 Aligned_cols=41 Identities=32% Similarity=0.450 Sum_probs=37.2
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHH
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~ 183 (617)
++.+|+||||.|+|||...||.++|+. |++++++.++++..
T Consensus 3 ~~~~iILAaG~s~R~g~~~~K~l~~~~---g~pli~~~l~~l~~ 43 (227)
T PRK00155 3 MVYAIIPAAGKGSRMGADRPKQYLPLG---GKPILEHTLEAFLA 43 (227)
T ss_pred ceEEEEEcCccccccCCCCCceeeEEC---CEEHHHHHHHHHHc
Confidence 578899999999999988999999995 99999999998864
No 81
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=96.06 E-value=0.0059 Score=59.56 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=32.3
Q ss_pred EEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHH
Q 007115 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (617)
Q Consensus 142 avvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~ 183 (617)
++|+||||.|+|||. +|.++++. |+++++..++.+++
T Consensus 2 ~~vILAgG~s~Rmg~--~K~ll~~~---g~~ll~~~i~~~~~ 38 (190)
T TIGR03202 2 VAIYLAAGQSRRMGE--NKLALPLG---ETTLGSASLKTALS 38 (190)
T ss_pred eEEEEcCCccccCCC--CceeceeC---CccHHHHHHHHHHh
Confidence 579999999999985 79999995 99999999987653
No 82
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=96.02 E-value=0.0055 Score=59.91 Aligned_cols=39 Identities=28% Similarity=0.325 Sum_probs=34.7
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHH
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECIL 182 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~ 182 (617)
++.+|+||||.|+||| ..||.++|+. |+|+++..++.+.
T Consensus 3 ~~~~vILA~G~s~Rm~-~~~K~ll~~~---g~~ll~~~i~~l~ 41 (193)
T PRK00317 3 PITGVILAGGRSRRMG-GVDKGLQELN---GKPLIQHVIERLA 41 (193)
T ss_pred CceEEEEcCCCcccCC-CCCCceeEEC---CEEHHHHHHHHHh
Confidence 5789999999999996 3699999995 9999999999876
No 83
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=95.99 E-value=0.0057 Score=60.67 Aligned_cols=39 Identities=33% Similarity=0.442 Sum_probs=34.8
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHH
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~ 183 (617)
++..|+||||.|+|||. +|.++|+. |+|+++..++.+..
T Consensus 7 ~~~~vILAgG~s~Rmg~--~K~ll~~~---g~~ll~~~i~~l~~ 45 (200)
T PRK02726 7 NLVALILAGGKSSRMGQ--DKALLPWQ---GVPLLQRVARIAAA 45 (200)
T ss_pred CceEEEEcCCCcccCCC--CceeeEEC---CEeHHHHHHHHHHh
Confidence 57889999999999984 79999995 99999999998863
No 84
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=95.88 E-value=0.11 Score=56.61 Aligned_cols=199 Identities=16% Similarity=0.167 Sum_probs=123.9
Q ss_pred cceEEEEEcCCcCCcCCc---cCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHH
Q 007115 139 KNAAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (617)
Q Consensus 139 ~kvavvlLaGGlGTRLG~---~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~ 215 (617)
+++-.++||||+|+||+- ..+|..+|.+ ...-+.|+.+... .+ +| ---+.+.|-...| ...+
T Consensus 4 ~~~laiILaGg~G~rL~~LT~~RakpAVpFg--GkYRiIDF~LSN~------vN---SG---i~~I~VltQy~~~-SL~~ 68 (393)
T COG0448 4 KNVLAIILAGGRGSRLSPLTKDRAKPAVPFG--GKYRIIDFALSNC------VN---SG---IRRIGVLTQYKSH-SLND 68 (393)
T ss_pred cceEEEEEcCCCCCccchhhhCccccccccC--ceeEEEeEEcccc------cc---cC---CCeEEEEeccchh-HHHH
Confidence 467789999999999973 7888888886 2222333332222 11 11 3457888988888 6777
Q ss_pred HHHhCCCCCCCCC--cEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEe
Q 007115 216 LLESNSYFGMKPT--QVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQ 293 (617)
Q Consensus 216 ~l~~~~~FGl~~~--~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~ 293 (617)
++..-..|++++. .|+++ |.-. ....-.|+-.+-=.+|..| ..+.+-+-+|+.+.+
T Consensus 69 Hi~~G~~w~l~~~~~~v~il-----p~~~-----------~~~~~~wy~Gtadai~Qnl------~~i~~~~~eyvlIls 126 (393)
T COG0448 69 HIGRGWPWDLDRKNGGVFIL-----PAQQ-----------REGGERWYEGTADAIYQNL------LIIRRSDPEYVLILS 126 (393)
T ss_pred HhhCCCccccccccCcEEEe-----Cchh-----------ccCCCcceeccHHHHHHhH------HHHHhcCCCEEEEec
Confidence 7887776766532 33322 2110 0112235533333344433 335567999999999
Q ss_pred CCCccccccc-hHHHHHHhhcCCceeEEeee--CCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccC
Q 007115 294 DTNGLLFKAI-PASLGVSATKQYHVNSLAVP--RKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCE 370 (617)
Q Consensus 294 vDN~L~~~~D-P~~lG~~~~~~~d~~~kvv~--r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~ 370 (617)
-|= +.+. | -.+|-+|.+.++|+..-|.+ +..+...|++ .+ +++||. +|+.|.+.. +...
T Consensus 127 gDh-IYkm-Dy~~ml~~H~~~gadiTv~~~~Vp~~eas~fGim-~~-D~~~~i----~~F~eKp~~--------~~~~-- 188 (393)
T COG0448 127 GDH-IYKM-DYSDMLDFHIESGADVTVAVKEVPREEASRFGVM-NV-DENGRI----IEFVEKPAD--------GPPS-- 188 (393)
T ss_pred CCE-EEec-CHHHHHHHHHHcCCCEEEEEEECChHhhhhcCce-EE-CCCCCE----EeeeeccCc--------CCcc--
Confidence 888 3444 5 45799999999999888776 5555667843 32 556663 777666443 1111
Q ss_pred CCCCCCccceeeeeeehhhhHHHHhh
Q 007115 371 TGYSPFPGNINQLILELGPYMEELKK 396 (617)
Q Consensus 371 ~gf~~f~gNinn~~~~L~~~~~~l~~ 396 (617)
.+ .+...+..|+-+.+.+.|++
T Consensus 189 --~~--laSMgiYIf~~~~L~~~L~~ 210 (393)
T COG0448 189 --NS--LASMGIYIFNTDLLKELLEE 210 (393)
T ss_pred --cc--eeeeeeEEEcHHHHHHHHHH
Confidence 11 24688899999999988875
No 85
>PLN02917 CMP-KDO synthetase
Probab=95.73 E-value=0.29 Score=51.79 Aligned_cols=183 Identities=10% Similarity=0.034 Sum_probs=100.2
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
++.+|++|+|.++||+ +|.++|+. |++++++.++++... + .+..++.. ..++++.+++.+
T Consensus 47 ~i~aIIpA~G~SsR~~---~K~L~~i~---GkPLL~~vi~~a~~~----~--------~~~~VVV~--~~~e~I~~~~~~ 106 (293)
T PLN02917 47 RVVGIIPARFASSRFE---GKPLVHIL---GKPMIQRTWERAKLA----T--------TLDHIVVA--TDDERIAECCRG 106 (293)
T ss_pred cEEEEEecCCCCCCCC---CCCeeeEC---CEEHHHHHHHHHHcC----C--------CCCEEEEE--CChHHHHHHHHH
Confidence 7889999999999996 59999995 999999999998643 1 23334443 235677777764
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 007115 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (617)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~ 299 (617)
+ |. +++... ...+.|-|.+..++. .+ ....+++.+.+-|.+|.
T Consensus 107 ~---~v-------------~vi~~~--------------~~~~~GT~~~~~a~~------~l-~~~~d~Vlil~gD~PlI 149 (293)
T PLN02917 107 F---GA-------------DVIMTS--------------ESCRNGTERCNEALK------KL-EKKYDIVVNIQGDEPLI 149 (293)
T ss_pred c---CC-------------EEEeCC--------------cccCCchHHHHHHHH------hc-cCCCCEEEEecCCcCCC
Confidence 3 21 111110 012445555654432 22 23457899999999987
Q ss_pred cccchH-HHHHHhhcC-CceeEEeeeCCcccc--cceEEEEecCCCcee--E-E-EEeecCCCHHHhhcCCCCCCCccCC
Q 007115 300 FKAIPA-SLGVSATKQ-YHVNSLAVPRKAKEA--IGGITRLTHADGRSM--V-I-NVEYNQLDPLLRATGFPDGDVNCET 371 (617)
Q Consensus 300 ~~~DP~-~lG~~~~~~-~d~~~kvv~r~~~E~--vG~i~~~~~~dG~~~--v-~-nVEYsel~~~l~~~~~~~g~l~~~~ 371 (617)
..-+.. ++-.+..+. +.++.-+.+-.+.+. -|.+.++++.+|+.. . . .+|+.+-. ++..
T Consensus 150 ~~~tI~~li~~~~~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~--------~~~~----- 216 (293)
T PLN02917 150 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGK--------VNPQ----- 216 (293)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEeeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCcc--------cccc-----
Confidence 543221 233232222 233333333233333 355544456667521 0 0 12332210 0011
Q ss_pred CCCCCccceeeeeeehhhhHHHHh
Q 007115 372 GYSPFPGNINQLILELGPYMEELK 395 (617)
Q Consensus 372 gf~~f~gNinn~~~~L~~~~~~l~ 395 (617)
...--|+....|+.+++. .+.
T Consensus 217 --~i~~~n~Giy~f~~~~L~-~l~ 237 (293)
T PLN02917 217 --FPYLLHLGIQSYDAKFLK-IYP 237 (293)
T ss_pred --cceEEEEEEEEeCHHHHH-HHH
Confidence 112239999999998776 553
No 86
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=95.72 E-value=0.013 Score=64.19 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=38.0
Q ss_pred cceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHH
Q 007115 139 KNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILAL 184 (617)
Q Consensus 139 ~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l 184 (617)
.++++|+||||.|+|||...||.++|+. |++++++.++.+.+.
T Consensus 4 m~v~aIILAAG~GsRmg~~~pKqll~l~---GkPll~~tl~~l~~~ 46 (378)
T PRK09382 4 SDISLVIVAAGRSTRFSAEVKKQWLRIG---GKPLWLHVLENLSSA 46 (378)
T ss_pred CcceEEEECCCCCccCCCCCCeeEEEEC---CeeHHHHHHHHHhcC
Confidence 3678999999999999988999999995 999999998887643
No 87
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=95.72 E-value=0.009 Score=64.98 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=35.9
Q ss_pred cceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHH
Q 007115 139 KNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECIL 182 (617)
Q Consensus 139 ~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~ 182 (617)
.++++|+||||.||||| ..||.++|++ |+|+++..++.+.
T Consensus 4 ~~i~~VILAgG~s~Rmg-g~~K~ll~i~---Gkpll~~~i~~l~ 43 (366)
T PRK14489 4 SQIAGVILAGGLSRRMN-GRDKALILLG---GKPLIERVVDRLR 43 (366)
T ss_pred CCceEEEEcCCcccCCC-CCCCceeEEC---CeeHHHHHHHHHH
Confidence 47889999999999996 4799999995 9999999999885
No 88
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.64 E-value=0.0089 Score=65.05 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=34.3
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHH
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECIL 182 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~ 182 (617)
+++.|+||||+|+||| .+|.++|+. |+|+++..++.+.
T Consensus 174 ~i~~iILAGG~SsRmG--~~K~ll~~~---Gk~ll~~~l~~l~ 211 (369)
T PRK14490 174 PLSGLVLAGGRSSRMG--SDKALLSYH---ESNQLVHTAALLR 211 (369)
T ss_pred CceEEEEcCCccccCC--CCcEEEEEC---CccHHHHHHHHHH
Confidence 5689999999999998 599999995 9999999988885
No 89
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=95.43 E-value=0.014 Score=63.24 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=34.6
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHH
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~ 183 (617)
.+..|+||||.|+||| .+|.++|+. |+|+++..++++..
T Consensus 160 ~i~~IILAGGkSsRMG--~dKaLL~~~---GkpLl~~~ie~l~~ 198 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG--KDKALLNYQ---GQPHAQYLYDLLAK 198 (346)
T ss_pred CceEEEEeccccccCC--CCcccceeC---CccHHHHHHHHHHh
Confidence 5788999999999998 699999995 99999998877754
No 90
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=95.27 E-value=0.038 Score=55.32 Aligned_cols=62 Identities=18% Similarity=0.244 Sum_probs=46.1
Q ss_pred EEEEcCCcCCcCC---ccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccc-cEEEecCccchHHHHHHHH
Q 007115 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLE 218 (617)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~i-Pl~IMTS~~T~~~T~~~l~ 218 (617)
+|+||||.|+||+ ...||.++|+. |++++++.++.+... .+ -.+|++...- +.+.+++.
T Consensus 3 avIlagg~g~rl~plt~~~pK~llpv~---g~pli~~~l~~l~~~-------------gi~~i~vv~~~~~-~~~~~~~~ 65 (216)
T cd02507 3 AVVLADGFGSRFLPLTSDIPKALLPVA---NVPLIDYTLEWLEKA-------------GVEEVFVVCCEHS-QAIIEHLL 65 (216)
T ss_pred EEEEeCCCccccCccccCCCcccceEC---CEEHHHHHHHHHHHC-------------CCCeEEEEeCCcH-HHHHHHHH
Confidence 5779999999996 37899999996 999999988877642 23 3667777554 45666666
Q ss_pred hCC
Q 007115 219 SNS 221 (617)
Q Consensus 219 ~~~ 221 (617)
+..
T Consensus 66 ~~~ 68 (216)
T cd02507 66 KSK 68 (216)
T ss_pred hcc
Confidence 543
No 91
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=95.26 E-value=0.026 Score=59.80 Aligned_cols=63 Identities=17% Similarity=0.204 Sum_probs=48.0
Q ss_pred eEEEEEcCCcCCcCCc---cCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 007115 141 AAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (617)
Q Consensus 141 vavvlLaGGlGTRLG~---~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l 217 (617)
.-+|++|||.||||.- ..||.++|+. |++++++.++.+.+. + .-.++|.+. ...+.+.++|
T Consensus 9 ~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~---g~pii~~~l~~l~~~----g--------i~~i~vv~~-~~~~~i~~~~ 72 (302)
T PRK13389 9 KKAVIPVAGLGTRMLPATKAIPKEMLPLV---DKPLIQYVVNECIAA----G--------ITEIVLVTH-SSKNSIENHF 72 (302)
T ss_pred eEEEEECCcCCccCCCccCCCCceeeEEC---CEEHHHHHHHHHHHC----C--------CCEEEEEeC-CCHHHHHHHH
Confidence 3478899999999964 7999999995 999999999988653 1 112444444 5578899999
Q ss_pred Hh
Q 007115 218 ES 219 (617)
Q Consensus 218 ~~ 219 (617)
..
T Consensus 73 ~~ 74 (302)
T PRK13389 73 DT 74 (302)
T ss_pred cc
Confidence 74
No 92
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=95.24 E-value=0.011 Score=59.06 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=33.1
Q ss_pred EEEEcCCcCCcCC---ccCCcccCCcccCCCcchHHHHHHHHHH
Q 007115 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILA 183 (617)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~gks~lql~~~~i~~ 183 (617)
+|+||||.||||+ .+.||.++|+. |+++++..++.+..
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~---g~pli~~~l~~l~~ 41 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVD---GKPMIEWVIESLAK 41 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEEC---CEEHHHHHHHhhhc
Confidence 5899999999995 37899999995 99999999888864
No 93
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=95.05 E-value=0.03 Score=59.42 Aligned_cols=198 Identities=22% Similarity=0.246 Sum_probs=105.6
Q ss_pred eEEEEEcCCcCCcC----CccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 007115 141 AAFVLVAGGLGERL----GYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (617)
Q Consensus 141 vavvlLaGGlGTRL----G~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~ 216 (617)
+.-|+||||.|||| .-..||..+... +++|+||..++|+..+.. .-.+++.|+..-...+++=
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~--~~~Sllq~T~~R~~~l~~-----------~~~~~vVtne~~~f~v~eq 68 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLF--GDLSLLQQTVKRLAFLGD-----------IEEPLVVTNEKYRFIVKEQ 68 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceeeC--CCCcHHHHHHHHHhhcCC-----------ccCeEEEeCHHHHHHHHHH
Confidence 45689999999999 447899998764 689999999999987632 2356677776666666665
Q ss_pred HHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCC
Q 007115 217 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (617)
Q Consensus 217 l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN 296 (617)
|.+-+. ....+ ++++|..+ -++|- |..+ .+.-....|=--+.|...|-
T Consensus 69 l~e~~~-------------------~~~~~-illEP~gR---nTApA----IA~a-----a~~~~~~~~d~~~lVlpsDH 116 (333)
T COG0836 69 LPEIDI-------------------ENAAG-IILEPEGR---NTAPA----IALA-----ALSATAEGGDALVLVLPSDH 116 (333)
T ss_pred Hhhhhh-------------------ccccc-eEeccCCC---CcHHH----HHHH-----HHHHHHhCCCcEEEEecCcc
Confidence 554211 11122 44433322 12331 1111 12212233423455555555
Q ss_pred ccccccchHHHHHH------hhcCCceeEEeeeCCcccccceEEEEec-CC-CceeEEEEeecCCCHHHhhcCCCCCCCc
Q 007115 297 GLLFKAIPASLGVS------ATKQYHVNSLAVPRKAKEAIGGITRLTH-AD-GRSMVINVEYNQLDPLLRATGFPDGDVN 368 (617)
Q Consensus 297 ~L~~~~DP~~lG~~------~~~~~d~~~kvv~r~~~E~vG~i~~~~~-~d-G~~~v~nVEYsel~~~l~~~~~~~g~l~ 368 (617)
. ...- ..|.--. ++++.=+.+=.+|..|.---|=|=.-.. .+ |-+.| -++-|.|.+-.++ ...
T Consensus 117 ~-I~d~-~af~~av~~A~~~A~~g~lVTfGI~Pt~PeTGYGYIe~G~~~~~~~~~~V--~~FvEKPd~etA~-----~yv 187 (333)
T COG0836 117 V-IADE-EAFLNAVKKAEKAAEEGGIVTFGIPPTRPETGYGYIETGESIAENGVYKV--DRFVEKPDLETAK-----KYV 187 (333)
T ss_pred e-eccH-HHHHHHHHHHHHHHHcCCEEEEecCCCCCccCcceeecCcccccCCceEe--eeeeeCCCHHHHH-----HHH
Confidence 2 2111 1222111 2334444444555556555554422000 01 23333 5566666654332 111
Q ss_pred cCCC-CCCCccceeeeeeehhhhHHHHhh
Q 007115 369 CETG-YSPFPGNINQLILELGPYMEELKK 396 (617)
Q Consensus 369 ~~~g-f~~f~gNinn~~~~L~~~~~~l~~ 396 (617)
..| | +| |...+.|+.+.|.+.+++
T Consensus 188 -~sG~y-~W--NSGmF~Fra~~~l~e~~~ 212 (333)
T COG0836 188 -ESGEY-LW--NSGMFLFRASVFLEELKK 212 (333)
T ss_pred -HcCce-Ee--eccceEEEHHHHHHHHHh
Confidence 123 3 45 999999999998888875
No 94
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=94.92 E-value=0.047 Score=61.56 Aligned_cols=196 Identities=21% Similarity=0.167 Sum_probs=106.0
Q ss_pred eEEEEEcCCcCCcCC----ccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 007115 141 AAFVLVAGGLGERLG----YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (617)
Q Consensus 141 vavvlLaGGlGTRLG----~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~ 216 (617)
+-.|+||||.||||- ...||.++|+. .++|+||..++++..+ + ..-++ |.|+..-.+.+++-
T Consensus 6 ~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~--~~~sllq~t~~r~~~~----~-------~~~~i-ivt~~~~~~~v~~q 71 (478)
T PRK15460 6 LYPVVMAGGSGSRLWPLSRVLYPKQFLCLK--GDLTMLQTTICRLNGV----E-------CESPV-VICNEQHRFIVAEQ 71 (478)
T ss_pred eEEEEECCCCccccccCCCCCCCcceeECC--CCCCHHHHHHHHHHhC----C-------CCCcE-EEeCHHHHHHHHHH
Confidence 567999999999994 23699999985 4689999999987654 1 12244 55877666666666
Q ss_pred HHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHc--C-ceEEEEEe
Q 007115 217 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDA--G-LKWVLFFQ 293 (617)
Q Consensus 217 l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~--G-~eyi~v~~ 293 (617)
+.+.+. ...+++++|... -++|.. .+.+++ +.++ + -.-+.|..
T Consensus 72 l~~~~~---------------------~~~~ii~EP~~r---nTApai---alaa~~-------~~~~~~~~~~~v~vlP 117 (478)
T PRK15460 72 LRQLNK---------------------LTENIILEPAGR---NTAPAI---ALAALA-------AKRHSPESDPLMLVLA 117 (478)
T ss_pred HHhcCC---------------------ccccEEecCCCC---ChHHHH---HHHHHH-------HHHhcCCCCCeEEEec
Confidence 654221 012455533222 234431 122221 1222 2 24666777
Q ss_pred CCCccccccchHH-----HHHH-hhcCCceeEEeeeCCcccccceEEEEecCC-----CceeEEEEeecCCCHHHhhcCC
Q 007115 294 DTNGLLFKAIPAS-----LGVS-ATKQYHVNSLAVPRKAKEAIGGITRLTHAD-----GRSMVINVEYNQLDPLLRATGF 362 (617)
Q Consensus 294 vDN~L~~~~DP~~-----lG~~-~~~~~d~~~kvv~r~~~E~vG~i~~~~~~d-----G~~~v~nVEYsel~~~l~~~~~ 362 (617)
.|.. .... ..| -+.. ++.+.=+.+=+.|..|.---|=|-.-...+ +-+.| ..+.|.++.-.++.
T Consensus 118 aDH~-I~d~-~~F~~~i~~A~~~A~~~~lvt~GI~Pt~PeTgyGYI~~g~~~~~~~~~~~~~V--~~F~EKPd~~tA~~- 192 (478)
T PRK15460 118 ADHV-IADE-DAFRAAVRNAMPYAEAGKLVTFGIVPDLPETGYGYIRRGEVSAGEQDTVAFEV--AQFVEKPNLETAQA- 192 (478)
T ss_pred cccc-cCCH-HHHHHHHHHHHHHHhcCCEEEEecCCCCCCCCCCeEEeCCccccccccCceEe--eEEEeCCCHHHHHH-
Confidence 7773 2221 112 1221 122443444444566776667654211101 11233 55666655533221
Q ss_pred CCCCCccCCCCCCCccceeeeeeehhhhHHHHhh
Q 007115 363 PDGDVNCETGYSPFPGNINQLILELGPYMEELKK 396 (617)
Q Consensus 363 ~~g~l~~~~gf~~f~gNinn~~~~L~~~~~~l~~ 396 (617)
+. .+|--+| |..++.|+.+.+.+.+++
T Consensus 193 ----yl-~~G~y~W--NsGiF~~~a~~~l~~~~~ 219 (478)
T PRK15460 193 ----YV-ASGEYYW--NSGMFLFRAGRYLEELKK 219 (478)
T ss_pred ----HH-HcCCEEE--ecceeheeHHHHHHHHHH
Confidence 11 1231145 999999999998888875
No 95
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=94.78 E-value=0.022 Score=56.64 Aligned_cols=39 Identities=26% Similarity=0.393 Sum_probs=34.9
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHH
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILAL 184 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l 184 (617)
.+..|+||||++.|| .+|.+++++ |++++|+.++++...
T Consensus 4 ~~~~vILAGG~srRm---~dK~l~~~~---g~~lie~v~~~L~~~ 42 (192)
T COG0746 4 PMTGVILAGGKSRRM---RDKALLPLN---GRPLIEHVIDRLRPQ 42 (192)
T ss_pred CceEEEecCCccccc---cccccceeC---CeEHHHHHHHHhccc
Confidence 568899999999999 899999995 999999999998643
No 96
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=94.60 E-value=0.1 Score=53.24 Aligned_cols=35 Identities=17% Similarity=-0.007 Sum_probs=31.2
Q ss_pred EEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHH
Q 007115 143 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (617)
Q Consensus 143 vvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~ 183 (617)
+|++|+|.||||+ +|.++++. |++++++.++++++
T Consensus 2 ~iIpA~g~s~R~~---~K~L~~l~---GkPli~~~le~~~~ 36 (238)
T TIGR00466 2 VIIPARLASSRLP---GKPLEDIF---GKPMIVHVAENANE 36 (238)
T ss_pred EEEecCCCCCCCC---CCeecccC---CcCHHHHHHHHHHh
Confidence 6899999999994 79999995 99999999998754
No 97
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=0.59 Score=49.35 Aligned_cols=161 Identities=14% Similarity=0.143 Sum_probs=107.1
Q ss_pred eEEEEEcCC--cCCcC---CccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHH
Q 007115 141 AAFVLVAGG--LGERL---GYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (617)
Q Consensus 141 vavvlLaGG--lGTRL---G~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~ 215 (617)
+..|+|.|| -|||+ .++.||-++|++ |....+..+....++..+ --+++..++..+.-..
T Consensus 3 ~~AVIlVGGP~kGTRFRPLSf~vPKPLfpia---G~pmI~Hhi~ac~qi~~l------------~eI~LvGFy~e~~f~~ 67 (407)
T KOG1460|consen 3 VKAVILVGGPQKGTRFRPLSFNVPKPLFPIA---GVPMIHHHISACKQISGL------------AEILLVGFYEERVFTD 67 (407)
T ss_pred eEEEEEecCCCCCccccccccCCCCCccccC---CcchhhhhHHHHhcccch------------hheeEEecccchHHHH
Confidence 344555566 48995 689999999997 999999988877666433 3346667777888888
Q ss_pred HHHhCC-CCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeC
Q 007115 216 LLESNS-YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQD 294 (617)
Q Consensus 216 ~l~~~~-~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~v 294 (617)
|+.+-. .| ++|. +.+ -+.+|.|.||-...+++ ..++.--..+|+.|.
T Consensus 68 fis~~~~e~-------------~~pv------rYL--------~E~~plGtaGgLyhFrd-----qIl~g~ps~vFvlna 115 (407)
T KOG1460|consen 68 FISAIQQEF-------------KVPV------RYL--------REDNPLGTAGGLYHFRD-----QILAGSPSAVFVLNA 115 (407)
T ss_pred HHHHHHhhc-------------ccch------hhh--------ccCCCCCcccceeehhh-----HHhcCCCceEEEEec
Confidence 888632 11 2221 111 23478888776555543 355566789999988
Q ss_pred CCccccccchHHHHHHhhcCCceeEEeeeCC--cccccceEEEEecC-CCceeEEEEeecCCCH
Q 007115 295 TNGLLFKAIPASLGVSATKQYHVNSLAVPRK--AKEAIGGITRLTHA-DGRSMVINVEYNQLDP 355 (617)
Q Consensus 295 DN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~--~~E~vG~i~~~~~~-dG~~~v~nVEYsel~~ 355 (617)
|=+ +....+.++..+...+..+.+.++.-+ .+-.-|-++ +++ .|+. +-|.|.+.
T Consensus 116 DVC-csfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV--~dP~t~ev----lHYveKPs 172 (407)
T KOG1460|consen 116 DVC-CSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLV--EDPSTGEV----LHYVEKPS 172 (407)
T ss_pred cee-cCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeee--ecCCcCce----EEeecCcc
Confidence 874 445557889999999999999998844 444456544 443 2432 66776643
No 98
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=93.17 E-value=0.21 Score=50.21 Aligned_cols=60 Identities=20% Similarity=0.168 Sum_probs=42.2
Q ss_pred EEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccc-hHHHHHHHHh
Q 007115 143 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDT-HSRTQELLES 219 (617)
Q Consensus 143 vvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T-~~~T~~~l~~ 219 (617)
+|+||||.++||| +|.++|+. |++++++.++.+.... .--.++|-|+..- ++...+++..
T Consensus 2 aiIlA~G~S~R~~---~K~ll~l~---Gkpli~~~i~~l~~~~-----------~~~~ivVv~~~~~~~~~i~~~~~~ 62 (233)
T cd02518 2 AIIQARMGSTRLP---GKVLKPLG---GKPLLEHLLDRLKRSK-----------LIDEIVIATSTNEEDDPLEALAKK 62 (233)
T ss_pred EEEeeCCCCCCCC---CCcccccC---CccHHHHHHHHHHhCC-----------CCCeEEEECCCCcccHHHHHHHHH
Confidence 4889999999996 59999985 9999999998886420 0113555555443 2566676653
No 99
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=90.54 E-value=0.42 Score=47.58 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=33.2
Q ss_pred EEEEcCCcCCcC---CccCCcccCCcccCCCcchHHHHHHHHHH
Q 007115 143 FVLVAGGLGERL---GYNGIKVALPAETTTGTCFLQNYIECILA 183 (617)
Q Consensus 143 vvlLaGGlGTRL---G~~~pK~~lpv~~~~gks~lql~~~~i~~ 183 (617)
.|+||.|+|||+ ..+.||+++.| .|+++++-++++++.
T Consensus 3 AIIlAAG~gsR~~plT~~tpK~LlkV---~g~plIErqI~~L~e 43 (231)
T COG4750 3 AIILAAGLGSRFVPLTQSTPKSLLKV---NGEPLIERQIEQLRE 43 (231)
T ss_pred eEEEecccccccccccccCChHHHHh---cCcccHHHHHHHHHH
Confidence 688999999997 46899999999 499999999888863
No 100
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=90.04 E-value=0.43 Score=49.89 Aligned_cols=60 Identities=25% Similarity=0.288 Sum_probs=42.5
Q ss_pred EEEEcCCcCCcC---CccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007115 143 FVLVAGGLGERL---GYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (617)
Q Consensus 143 vvlLaGGlGTRL---G~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (617)
.|+.|.|+|||+ --..||-|||+- +|+..|+.++..... | .--++|.|+.+-+ .+.++|.
T Consensus 7 AViPaAGlGTRfLPATKaiPKEMLPIv---dKP~IqYiVeEa~~a---------G---Ie~i~iVTgr~K~-~IeDhFD 69 (291)
T COG1210 7 AVIPAAGLGTRFLPATKAIPKEMLPIV---DKPLIQYIVEEAVAA---------G---IEEILIVTGRGKR-AIEDHFD 69 (291)
T ss_pred EEEEccCcccccccccccCchhhcccc---CchhHHHHHHHHHHc---------C---CCEEEEEecCCcc-hHHHhCc
Confidence 578899999998 336899999994 899999999876533 1 2345556655433 5555554
No 101
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=86.81 E-value=0.78 Score=45.91 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=44.9
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHH
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~ 215 (617)
+++.|+||-|.|+||| .+|-++|.. |++++...+++.+.- -+ =-+++.|+....+.-..
T Consensus 5 ~v~~VvLAAGrssRmG--~~KlLap~~---g~plv~~~~~~a~~a--~~----------~~vivV~g~~~~~~~~a 63 (199)
T COG2068 5 TVAAVVLAAGRSSRMG--QPKLLAPLD---GKPLVRASAETALSA--GL----------DRVIVVTGHRVAEAVEA 63 (199)
T ss_pred ceEEEEEcccccccCC--CcceecccC---CCcHHHHHHHHHHhc--CC----------CeEEEEeCcchhhHHHh
Confidence 7899999999999999 899999994 999999999987631 11 14667777763333333
No 102
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=84.43 E-value=17 Score=36.78 Aligned_cols=131 Identities=17% Similarity=0.129 Sum_probs=77.0
Q ss_pred EEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCCC
Q 007115 143 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSY 222 (617)
Q Consensus 143 vvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~~~ 222 (617)
+|++|.|.++||+ .|-+.|+. |++++++.+++.++. + .+--++.+++ ++++.++.+++
T Consensus 2 aiIpArG~Skr~~---~Knl~~l~---GkpLi~~ti~~a~~s----~--------~~d~IvVstd--~~~i~~~a~~~-- 59 (222)
T TIGR03584 2 AIIPARGGSKRIP---RKNIKPFC---GKPMIAYSIEAALNS----G--------LFDKVVVSTD--DEEIAEVAKSY-- 59 (222)
T ss_pred EEEccCCCCCCCC---CccchhcC---CcCHHHHHHHHHHhC----C--------CCCEEEEeCC--CHHHHHHHHHc--
Confidence 4788999999995 58888885 999999999988653 1 1223333443 35677777753
Q ss_pred CCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHH-cCceEEEEEeCCCccccc
Q 007115 223 FGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHD-AGLKWVLFFQDTNGLLFK 301 (617)
Q Consensus 223 FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~-~G~eyi~v~~vDN~L~~~ 301 (617)
|. . +|.... . .+...--|..++.... ++.+.. ...+++.+.+.|.+|...
T Consensus 60 -g~---~--------v~~~r~--~----------~l~~d~~~~~~si~~~-----l~~l~~~~~~d~v~~l~~tsPl~~~ 110 (222)
T TIGR03584 60 -GA---S--------VPFLRP--K----------ELADDFTGTAPVVKHA-----IEELKLQKQYDHACCIYATAPFLQA 110 (222)
T ss_pred -CC---E--------eEEeCh--H----------HHcCCCCCchHHHHHH-----HHHHhhcCCCCEEEEecCCCCcCCH
Confidence 32 1 111100 0 0111112223333221 233322 346889999999998865
Q ss_pred cch-HHHHHHhhcCCceeEEeeeC
Q 007115 302 AIP-ASLGVSATKQYHVNSLAVPR 324 (617)
Q Consensus 302 ~DP-~~lG~~~~~~~d~~~kvv~r 324 (617)
-|- ..+..+.++++|...-|++.
T Consensus 111 ~~I~~~i~~~~~~~~ds~~sv~~~ 134 (222)
T TIGR03584 111 KILKEAFELLKQPNAHFVFSVTSF 134 (222)
T ss_pred HHHHHHHHHHHhCCCCEEEEeecc
Confidence 442 23444455679999988883
No 103
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=65.11 E-value=12 Score=38.18 Aligned_cols=64 Identities=22% Similarity=0.357 Sum_probs=47.9
Q ss_pred ceEEEEEcCCcCCcCCccCC--cccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCc-cchHHHHHH
Q 007115 140 NAAFVLVAGGLGERLGYNGI--KVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSD-DTHSRTQEL 216 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~p--K~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~-~T~~~T~~~ 216 (617)
++++|+=| |||++.= |.++|+. ++++++++++++++...+ =-++|-||. .+++..+.+
T Consensus 3 ~I~~IiQA-----RmgStRLpgKvLlpL~---~~pmI~~~lervrks~~~-----------d~ivvATS~~~~d~~l~~~ 63 (241)
T COG1861 3 MILVIIQA-----RMGSTRLPGKVLLPLG---GEPMIEYQLERVRKSKDL-----------DKIVVATSDKEEDDALEEV 63 (241)
T ss_pred cEEEEeee-----cccCccCCcchhhhcC---CCchHHHHHHHHhccccc-----------cceEEEecCCcchhHHHHH
Confidence 45666666 7776543 5799995 999999999999866443 247889998 577778888
Q ss_pred HHhCCC
Q 007115 217 LESNSY 222 (617)
Q Consensus 217 l~~~~~ 222 (617)
..++.+
T Consensus 64 ~~~~G~ 69 (241)
T COG1861 64 CRSHGF 69 (241)
T ss_pred HHHcCe
Confidence 888764
No 104
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=49.06 E-value=15 Score=40.48 Aligned_cols=66 Identities=20% Similarity=0.216 Sum_probs=48.7
Q ss_pred ceEEEEEcCCcCCcC---CccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 007115 140 NAAFVLVAGGLGERL---GYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (617)
Q Consensus 140 kvavvlLaGGlGTRL---G~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~ 216 (617)
+.-.|++|||-|||| +..-||.+|||. +++.+.+-+..+.+. + -.-+++.+-..-.+++++.
T Consensus 9 efqavV~a~~ggt~~p~~~~~~pKaLLPIg---n~PMi~YpL~~L~~~----g--------fteiiVv~~e~e~~~i~~a 73 (433)
T KOG1462|consen 9 EFQAVVLAGGGGTRMPEVTSRLPKALLPIG---NKPMILYPLNSLEQA----G--------FTEIIVVVNEDEKLDIESA 73 (433)
T ss_pred HhhhheeecCCceechhhhhhcchhhcccC---CcceeeeehhHHHhc----C--------CeEEEEEecHHHHHHHHHH
Confidence 455688999999998 348999999996 899988887777543 1 2234555556666788888
Q ss_pred HHhC
Q 007115 217 LESN 220 (617)
Q Consensus 217 l~~~ 220 (617)
|.++
T Consensus 74 l~~~ 77 (433)
T KOG1462|consen 74 LGSN 77 (433)
T ss_pred HhcC
Confidence 8764
No 105
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=33.05 E-value=93 Score=30.68 Aligned_cols=66 Identities=12% Similarity=0.182 Sum_probs=47.9
Q ss_pred eEEEcCCCCCCHHHHHhhcCCC-CCCCCCceEEEEeceEEeeCeEEEEEE-EEEcCCCCeEEecCCeEEe
Q 007115 539 RLTWKPKWGLTFSEIKNKVSGS-CSVSQKSTMVIKGRNVVLEDLSLNGAL-IIDSVDDAEVCYIMPILRY 606 (617)
Q Consensus 539 ~i~l~p~f~~~~~~~~~r~~~~-~~i~~~s~L~v~g~~~~~~~v~l~G~v-~I~a~~~~~~~i~~~~~~~ 606 (617)
.|.++|+ .+..++++++|..- -.=...-...|.|+.+|.-. .-+|.+ .|....|.-|.||.||-|+
T Consensus 70 vvsv~~~-~pk~del~akF~~EH~H~d~EvRy~vaG~GiF~v~-~~d~~~~~i~c~~gDLI~vP~gi~Hw 137 (181)
T COG1791 70 VVSVSPS-NPKLDELRAKFLQEHLHTDDEVRYFVAGEGIFDVH-SPDGKVYQIRCEKGDLISVPPGIYHW 137 (181)
T ss_pred EEEeCCC-CccHHHHHHHHHHHhccCCceEEEEEecceEEEEE-CCCCcEEEEEEccCCEEecCCCceEE
Confidence 4788887 57899999999742 22234456789999988421 225554 7788899999999999765
No 106
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.76 E-value=2.4e+02 Score=28.34 Aligned_cols=102 Identities=15% Similarity=0.117 Sum_probs=64.1
Q ss_pred CcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCcc-chHHHHHHHHhCCCCCCCCCcEEEEEeCceeeEecCCCce
Q 007115 170 GTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDD-THSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARL 248 (617)
Q Consensus 170 gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~-T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~ 248 (617)
+-+..+-.++.|.+|+..+.+ ..||++--.-.. -..+-+..|++--.=|++... .+|..+-.+.-..+.+
T Consensus 49 ~~~~~~~li~Ni~~Lr~~~~~------~giPVvyTaqp~~qs~~draLL~d~WGpgl~~~p---~~~~vv~~l~P~~~D~ 119 (218)
T COG1535 49 NCPLMEQLIANIAKLRIWCKQ------AGIPVVYTAQPGEQSPEDRALLKDFWGPGLTASP---EQQKVVDELAPGADDT 119 (218)
T ss_pred CCccHHHHHHHHHHHHHHHHH------cCCcEEEEecCCcCCHHHHHHHHHhcCCCCCCCh---hhhhhHHhcCCCCCce
Confidence 334677888999999888775 379987766664 555567777765444555331 1222221111111222
Q ss_pred ecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeC
Q 007115 249 AMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQD 294 (617)
Q Consensus 249 ~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~v 294 (617)
++ ..| -|.|+++|.+++.|++.|+..+.+-.|
T Consensus 120 vL-------~kw-------rYsAF~~s~Llq~lr~~grdQLIItGV 151 (218)
T COG1535 120 VL-------TKW-------RYSAFHRSPLLQMLREKGRDQLIITGV 151 (218)
T ss_pred EE-------eee-------ehhhhhcChHHHHHHHcCCCcEEEeeh
Confidence 22 112 289999999999999999998876544
No 107
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=27.23 E-value=2e+02 Score=29.76 Aligned_cols=91 Identities=21% Similarity=0.165 Sum_probs=56.4
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhh--hccCCc------ccc-cEEEecCccch
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCR--LAEGKC------QEI-PFAIMTSDDTH 210 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~--~~~g~~------~~i-Pl~IMTS~~T~ 210 (617)
+..+|+.|==..|||- -|.+-.+ .|+++.+..++|..+- .... .++.+. ... =-++|||.+-.
T Consensus 3 ~~~viIPAR~~STRLp---gKPLadI---~GkpmI~rV~e~a~~s--~~~rvvVATDde~I~~av~~~G~~avmT~~~h~ 74 (247)
T COG1212 3 KFVVIIPARLASTRLP---GKPLADI---GGKPMIVRVAERALKS--GADRVVVATDDERIAEAVQAFGGEAVMTSKDHQ 74 (247)
T ss_pred ceEEEEecchhcccCC---CCchhhh---CCchHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHhCCEEEecCCCCC
Confidence 4678888877777773 2333333 5999999999987633 1110 000000 011 35899999644
Q ss_pred ---HHHHHHHHhCCCCCCCCCcEEEEEeCceeeE
Q 007115 211 ---SRTQELLESNSYFGMKPTQVKLLKQEKVACL 241 (617)
Q Consensus 211 ---~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l 241 (617)
+.+.+.+++.+ ++++.+.+=.|+-.|++
T Consensus 75 SGTdR~~Ev~~~l~---~~~~~iIVNvQGDeP~i 105 (247)
T COG1212 75 SGTDRLAEVVEKLG---LPDDEIIVNVQGDEPFI 105 (247)
T ss_pred CccHHHHHHHHhcC---CCcceEEEEccCCCCCC
Confidence 44555566654 46788888889999987
No 108
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=22.80 E-value=2.5e+02 Score=27.34 Aligned_cols=34 Identities=24% Similarity=0.223 Sum_probs=24.0
Q ss_pred EEEEcCCcCCcCCccCC--cccCCcccCCCcchHHHHHHHHHHH
Q 007115 143 FVLVAGGLGERLGYNGI--KVALPAETTTGTCFLQNYIECILAL 184 (617)
Q Consensus 143 vvlLaGGlGTRLG~~~p--K~~lpv~~~~gks~lql~~~~i~~l 184 (617)
+|+.| |+|+++- |-+.++ .|++++++.++++++.
T Consensus 2 aiIpA-----R~gS~rlp~Knl~~l---~gkpLi~~~i~~a~~s 37 (217)
T PF02348_consen 2 AIIPA-----RGGSKRLPGKNLKPL---GGKPLIEYVIERAKQS 37 (217)
T ss_dssp EEEEE------SSSSSSTTGGGSEE---TTEEHHHHHHHHHHHT
T ss_pred EEEec-----CCCCCCCCcchhhHh---CCccHHHHHHHHHHhC
Confidence 56666 5555444 457777 4999999999999754
No 109
>PF14969 DUF4508: Domain of unknown function (DUF4508)
Probab=20.12 E-value=82 Score=28.22 Aligned_cols=30 Identities=23% Similarity=0.630 Sum_probs=23.0
Q ss_pred CcccccccccCCCCHHHHHHHHHHHhhcCCC
Q 007115 51 QSHLFEKWAAPGVDDNEKRAFFDQVAKLNSS 81 (617)
Q Consensus 51 Q~HL~~~~~~l~~~~~e~~~L~~qL~~id~~ 81 (617)
|-.||+-|-.. =++++|+.|+++|..+|..
T Consensus 59 qlkLf~qWf~~-W~~~ern~fl~~Lee~D~~ 88 (98)
T PF14969_consen 59 QLKLFRQWFPK-WSEEERNKFLEQLEEIDPD 88 (98)
T ss_pred hHHHHHHHHhh-ccHHHHHHHHHHHHHhChH
Confidence 55677766542 3589999999999999963
Done!