Query 007115
Match_columns 617
No_of_seqs 238 out of 779
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 17:32:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007115.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007115hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogz_A UDP-sugar pyrophosphory 100.0 2E-119 5E-124 1003.7 41.6 529 37-610 7-574 (630)
2 3r3i_A UTP--glucose-1-phosphat 100.0 3.7E-98 1E-102 820.7 27.8 455 50-609 52-518 (528)
3 3gue_A UTP-glucose-1-phosphate 100.0 5.1E-97 2E-101 806.7 33.6 440 85-608 28-479 (484)
4 2yqc_A UDP-N-acetylglucosamine 100.0 1.5E-87 5E-92 741.1 34.0 442 38-545 5-470 (486)
5 2oeg_A UTP-glucose-1-phosphate 100.0 9.2E-88 3.1E-92 742.5 18.5 444 86-608 29-484 (505)
6 1jv1_A Glcnac1P uridyltransfer 100.0 1.8E-82 6.2E-87 703.0 39.4 421 39-490 3-435 (505)
7 2icy_A Probable UTP-glucose-1- 100.0 1E-79 3.5E-84 675.2 35.8 452 67-608 7-461 (469)
8 3oc9_A UDP-N-acetylglucosamine 100.0 2.4E-79 8.2E-84 657.8 32.1 335 127-490 20-364 (405)
9 2i5k_A UTP--glucose-1-phosphat 100.0 1.6E-77 5.6E-82 661.0 33.1 455 54-608 20-477 (488)
10 3st8_A Bifunctional protein GL 98.4 2.3E-06 7.9E-11 94.3 16.0 190 140-396 12-204 (501)
11 4ecm_A Glucose-1-phosphate thy 98.0 0.0002 7E-09 72.2 17.1 181 140-395 24-207 (269)
12 3oam_A 3-deoxy-manno-octuloson 97.8 8.1E-05 2.8E-09 74.6 11.4 185 140-395 2-197 (252)
13 2qh5_A PMI, ALGA, mannose-6-ph 97.8 0.00014 4.7E-09 75.1 13.0 192 140-396 4-204 (308)
14 1fxo_A Glucose-1-phosphate thy 97.7 0.0004 1.4E-08 71.3 14.6 151 140-342 2-155 (293)
15 1yp2_A Glucose-1-phosphate ade 97.7 0.00036 1.2E-08 75.3 14.9 216 140-396 20-246 (451)
16 3brk_X Glucose-1-phosphate ade 97.7 0.00061 2.1E-08 73.0 16.2 206 138-395 10-221 (420)
17 1h7e_A 3-deoxy-manno-octuloson 97.6 0.00037 1.3E-08 68.6 11.4 126 140-324 2-129 (245)
18 1lvw_A Glucose-1-phosphate thy 97.6 0.0015 5E-08 67.3 16.0 70 141-225 4-76 (295)
19 3k8d_A 3-deoxy-manno-octuloson 97.5 0.00059 2E-08 69.3 12.6 186 140-394 18-212 (264)
20 2y6p_A 3-deoxy-manno-octuloson 97.5 0.00052 1.8E-08 67.0 11.7 119 140-321 2-121 (234)
21 1mc3_A Glucose-1-phosphate thy 97.5 0.0012 4.1E-08 68.0 13.8 143 141-334 4-150 (296)
22 3tqd_A 3-deoxy-manno-octuloson 97.4 0.00077 2.6E-08 68.1 11.8 188 140-394 9-205 (256)
23 4fce_A Bifunctional protein GL 97.4 0.0023 8E-08 68.7 16.2 180 140-396 8-189 (459)
24 3pnn_A Conserved domain protei 97.4 0.0036 1.2E-07 64.3 16.2 148 140-323 5-155 (303)
25 1hm9_A GLMU, UDP-N-acetylgluco 97.4 0.0016 5.6E-08 70.3 14.0 180 142-395 13-194 (468)
26 2v0h_A Bifunctional protein GL 97.3 0.0032 1.1E-07 67.5 15.6 64 140-219 5-68 (456)
27 2wee_A MOBA-related protein; u 97.2 0.00028 9.5E-09 66.8 5.2 61 140-218 5-65 (197)
28 2xwl_A 2-C-methyl-D-erythritol 97.2 0.00042 1.4E-08 67.0 6.6 64 140-217 2-65 (223)
29 2waw_A MOBA relate protein; un 97.2 0.00026 9E-09 67.0 4.6 61 140-218 5-65 (199)
30 1qwj_A Cytidine monophospho-N- 97.2 0.0035 1.2E-07 61.4 12.7 129 140-322 3-132 (229)
31 1vic_A 3-deoxy-manno-octuloson 97.2 0.0016 5.5E-08 65.1 10.4 128 140-324 2-130 (262)
32 3q80_A 2-C-methyl-D-erythritol 97.1 0.0006 2.1E-08 67.8 7.0 65 140-218 7-71 (231)
33 1tzf_A Glucose-1-phosphate cyt 97.1 0.00054 1.8E-08 67.9 5.9 158 141-334 3-167 (259)
34 3juk_A UDP-glucose pyrophospho 97.1 0.00093 3.2E-08 67.5 7.8 64 141-220 3-69 (281)
35 3f1c_A Putative 2-C-methyl-D-e 97.1 0.00049 1.7E-08 68.5 5.6 68 140-221 3-71 (246)
36 1ezi_A CMP-N-acetylneuraminic 97.0 0.00093 3.2E-08 65.2 7.0 131 140-324 4-136 (228)
37 1vgw_A 4-diphosphocytidyl-2C-m 97.0 0.00035 1.2E-08 68.1 4.0 41 140-183 6-46 (231)
38 2yc3_A 2-C-methyl-D-erythritol 96.9 0.00047 1.6E-08 67.1 3.7 41 140-183 4-44 (228)
39 2vsh_A TARI, 2-C-methyl-D-eryt 96.9 0.00087 3E-08 65.2 5.2 65 141-219 3-68 (236)
40 1i52_A 4-diphosphocytidyl-2-C- 96.9 0.00059 2E-08 66.9 4.0 41 140-183 7-47 (236)
41 3rsb_A Adenosylcobinamide-phos 96.8 0.00075 2.6E-08 64.2 4.6 61 142-219 2-62 (196)
42 1vpa_A 2-C-methyl-D-erythritol 96.8 0.00069 2.4E-08 66.2 3.6 41 140-183 13-53 (234)
43 3d5n_A Q97W15_sulso; NESG, SSR 96.7 0.00097 3.3E-08 64.0 4.3 38 140-182 2-39 (197)
44 1e5k_A Molybdopterin-guanine d 96.7 0.001 3.6E-08 64.2 4.3 39 140-182 6-44 (201)
45 1jyk_A LICC protein, CTP:phosp 96.6 0.0012 4.1E-08 66.1 4.5 42 140-184 25-69 (254)
46 4fcu_A 3-deoxy-manno-octuloson 96.6 0.01 3.5E-07 59.7 11.0 126 141-323 2-130 (253)
47 2px7_A 2-C-methyl-D-erythritol 96.6 0.0012 4E-08 65.3 3.8 37 140-180 25-61 (236)
48 4evw_A Nucleoside-diphosphate- 96.5 0.00055 1.9E-08 68.8 0.7 38 143-183 2-42 (255)
49 2e3d_A UTP--glucose-1-phosphat 96.5 0.0026 8.8E-08 64.9 5.7 64 140-219 8-74 (302)
50 2ux8_A Glucose-1-phosphate uri 96.4 0.0022 7.5E-08 65.4 4.9 64 140-219 14-80 (297)
51 3ngw_A Molybdopterin-guanine d 96.4 0.0016 5.5E-08 63.6 3.6 37 141-182 1-37 (208)
52 2x65_A Mannose-1-phosphate gua 96.4 0.0028 9.5E-08 66.4 5.5 193 141-396 2-206 (336)
53 2xme_A CTP-inositol-1-phosphat 96.3 0.0025 8.5E-08 62.3 4.3 61 138-217 16-76 (232)
54 2e8b_A Probable molybdopterin- 96.2 0.00091 3.1E-08 64.4 0.2 39 140-183 14-52 (201)
55 2pa4_A UTP-glucose-1-phosphate 96.1 0.004 1.4E-07 64.5 4.8 62 141-218 13-77 (323)
56 1w55_A ISPD/ISPF bifunctional 95.7 0.0068 2.3E-07 64.6 4.3 41 140-183 3-43 (371)
57 2cu2_A Putative mannose-1-phos 95.3 0.011 3.6E-07 62.0 4.4 40 141-183 3-47 (337)
58 2ggo_A 401AA long hypothetical 95.1 0.018 6.1E-07 60.8 5.4 60 142-220 2-64 (401)
59 2dpw_A Hypothetical protein TT 94.7 0.018 6.2E-07 56.4 3.9 41 140-184 2-45 (232)
No 1
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*
Probab=100.00 E-value=1.5e-119 Score=1003.69 Aligned_cols=529 Identities=36% Similarity=0.609 Sum_probs=479.2
Q ss_pred hhHHHHHHHHHH--CCCccccccccc-CCCCHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHhhccCCCCCCCCCC--
Q 007115 37 SEQVELAKMLME--MGQSHLFEKWAA-PGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLADSKAGKNPFDGFT-- 111 (617)
Q Consensus 37 ~~~~~l~~~L~~--~gQ~HL~~~~~~-l~~~~~e~~~L~~qL~~id~~~~~~l~~~~~~~~~~l~~s~~~~~~~~~~~-- 111 (617)
.+.++|+++|.+ +||+|||+||++ ++..++||++|++||..||..|+++|..|++++++++ .+..+.++++.+.
T Consensus 7 ~~~~~L~~~l~~~~~gQ~HLf~~w~~~l~~~~~e~~~L~~qL~~~d~~~~~gl~~~~~~a~~~l-~~~~~~~~~~~~~p~ 85 (630)
T 3ogz_A 7 SNLQALREELCTPGLDQGHLFEGWPETVDECNERQIALLTDLYMFSNMYPGGVAQYIRNGHELL-ARESEEVDFAALEMP 85 (630)
T ss_dssp HHHHHHHHHHTSTTTCCGGGGTTCCSSGGGCCHHHHHHHHHHHHGGGTSTTHHHHHHHHHHHHH-HHHTSCCCCSEEECC
T ss_pred hhHHHHHHHhhhccCCchhhhhhcccccCCCHHHHHHHHHHHHhhChhhhhhHHHHHHHHHHHh-hccccCCcccccccC
Confidence 456889999997 999999999998 5333899999999999999999999999999999999 4445567777777
Q ss_pred CCCCCcccccCCChhhhHHHHHhHHhhcceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhh
Q 007115 112 PSVPTGEVLKFGDDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRL 191 (617)
Q Consensus 112 p~vp~~~~l~~~~~~~~~~~~~G~~~l~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~ 191 (617)
|.+|.+..++.+++++.+|+++|+++|+|+|||+||||||||||+++||+++|+++++++||||++++||+ ++++
T Consensus 86 P~~~~~~~l~~~~~~~~~~~~~Gl~~i~kvavvllaGGlGTRLG~~~pK~~lpv~~~s~ks~lql~~e~i~---~~~g-- 160 (630)
T 3ogz_A 86 PLIFEAPSLHRRTAERTALENAGTAMLCKTVFVLVAGGLGERLGYSSIKVSLPVETATNTTYLAYYLRWAQ---RVGG-- 160 (630)
T ss_dssp SCEEECCCTTCCCHHHHHHHHHHHHHGGGEEEEEECCCEEGGGTEEEEGGGSBSCTTTCCBHHHHHHHHHH---HHHC--
T ss_pred CCCCccccccCCHHHHHHHHHHhHHHHhhceEEEecCCcccccCCCCCcccceecCCCCCcHHHHHHHHHH---HHhC--
Confidence 33345666777778889999999999999999999999999999999999999999999999999999999 3454
Q ss_pred ccCCcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHh
Q 007115 192 AEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHAL 271 (617)
Q Consensus 192 ~~g~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~a 271 (617)
+.||||||||++||++|++||++ ||++++||+||+|+++||+++++|++++ +++++++|+|+||||+|.+
T Consensus 161 -----~~iPl~IMTS~~T~~~T~~~~~~---fgl~~~~V~~F~Q~~~P~i~~~~g~l~l--~~~~~i~~~P~GhGdv~~a 230 (630)
T 3ogz_A 161 -----KEVPFVIMTSDDTHDRTLQLLRE---LQLEVPNLHVLKQGQVFCFADSAAHLAL--DETGKLLRKPHGHGDVHSL 230 (630)
T ss_dssp -----TTCCEEEEECTTTHHHHHHHHHH---TTCCCTTEEEEECCCEECBSSTTCCBCB--CTTSSBCEECCCTTHHHHH
T ss_pred -----CCCcEEEEecccchHHHHHHHHH---hCCCcccEEEEEcCCEEEEecCCCceee--cCCCcccCCCCCCHHHHHH
Confidence 58999999999999999999999 9999999999999999999878899999 6677999999999999999
Q ss_pred hhhcC------------------hhHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCceeEEeeeCCcccccceE
Q 007115 272 LYSSG------------------LLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGI 333 (617)
Q Consensus 272 L~~sG------------------~ld~l~~~G~eyi~v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~~~E~vG~i 333 (617)
|+++| +|++|+++|+||+||+||||+|++++||.||||++.+++||++|||+|+|+|++|++
T Consensus 231 L~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi~v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~p~E~vG~l 310 (630)
T 3ogz_A 231 IYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIVFIQDTNAGATITIPISLALSAEHSLDMNFTCIPRVPKEPIGLL 310 (630)
T ss_dssp HHHCBC--------------CCBHHHHHHHTTCCEEEEECTTBTTHHHHHHHHHHHHHHTTCSEEEEEECCCSSCSSCEE
T ss_pred HHHcCCCcccccccccccccHHHHHHHHHHcCCEEEEEEccCCccccccCHHHhHHHHhcCCCEEEEEEECCCCcceeeE
Confidence 99999 999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCce-eEEEEeecCCCHHHhhcCCCCCC-CccCCCCCCCccceeeeeeehhhhHHHHhhcCCccccccCCcccC
Q 007115 334 TRLTHADGRS-MVINVEYNQLDPLLRATGFPDGD-VNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYKD 411 (617)
Q Consensus 334 ~~~~~~dG~~-~v~nVEYsel~~~l~~~~~~~g~-l~~~~gf~~f~gNinn~~~~L~~~~~~l~~~~~~l~~~vnpk~~d 411 (617)
|++++.||++ +|+||||+|++++++..++++|+ +.+.++|++||||||||||+|++|+++|..+.+.||+||||||.|
T Consensus 311 ~~~~~~dGk~~~v~vVEYsei~~~~~~~~~~~g~~~~~~~~~~~f~GNtNnl~~~L~a~~~~l~~~~~~ip~~vNpK~~d 390 (630)
T 3ogz_A 311 CRTKKNSGDPWLVANVEYNVFAEVSRALNKDGGDEVSDPTGFSPFPGSVNTLVFKLSSYVDRLRESHGIVPEFINPKYSD 390 (630)
T ss_dssp EEEESSTTSCCEEEEECHHHHHHHHHHC------------CCCSSCEEEEEEEEEHHHHHHHHHHHTTCCCCEECCCBSS
T ss_pred EEEecCCCceeeeeEEEeccCCHhHhhccCCCccccccccccccccccceeeeEEHHHHHHHHHhccCccceecCCcccC
Confidence 9988889999 87889999999999999988888 777788999999999999999999999998889999999999999
Q ss_pred CCCCcccCcchhhhhhcccccCCCCCC-ceeEEEecCCceeecccCCCcccc-cCCCCCCCCChhhHHHHHHHHHHHHHH
Q 007115 412 ASKTSFKSSTRLECMMQDYPKTLPPSA-KVGFTVMDTWLAYAPVKNNPEDAA-KVPKGNPYHSATSGEMAIYCANSLILR 489 (617)
Q Consensus 412 ~~~~~~~~~~kLE~~m~D~~~~f~~~~-~~g~~~V~R~~~FsPvKN~~~~~~-~~~~g~~~dsp~t~~~dl~~~~~~~L~ 489 (617)
++++.+++++||||||||++++|+... ++++++||| +||+||||++++|+ |+++|++.|||.||++|+|+++++||+
T Consensus 391 ~~~~~~~~~~qLEt~m~d~~~~F~~~~~~v~~~~V~R-~~F~PVKn~~~~a~~k~~~g~~~~sp~t~~~dly~~~~~~L~ 469 (630)
T 3ogz_A 391 ETRRSFKKPARIESLMQDIALLFSEDDYRVGGTVFER-FSYQPVKNSLEEAAGLVAQGNGAYCAATGEAAFYELQRRRLK 469 (630)
T ss_dssp SSSCCBSSCBCEECCGGGGGGGCCTTTCCEEEEECCG-GGCCBCCBCHHHHHHHHHTTCCCCBHHHHHHHHHHHHHHHHH
T ss_pred CcccccCcchhhhhHHHHHHHhccccCcceeEEEECC-CeeecccCChhHhhhhhccCCCcCChHHHHHHHHHHHHHHHH
Confidence 998889899999999999999997455 889999999 99999999998884 459999999999999999999999999
Q ss_pred hhccccccccccCCchhHHHhhhhccccCeeec---CccccccCCe-eecCCCeEEEcCCCCCC--HHHHHhhcCC--CC
Q 007115 490 KVTRVSLSYCKNYSSELFWFLILSTCQAGAQVD---DPVQEVFNGQ-EVEVWPRLTWKPKWGLT--FSEIKNKVSG--SC 561 (617)
Q Consensus 490 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~-~~~~~P~i~l~p~f~~~--~~~~~~r~~~--~~ 561 (617)
+ ||+.++ .+...+++|+ +++.+|+|.|+|+|+++ ++++++||++ ++
T Consensus 470 ~--------------------------aG~~v~~~~~~~~~~~~~~~~~~~~P~i~l~p~~~~~~~~~~~~~k~~~~~~~ 523 (630)
T 3ogz_A 470 A--------------------------IGLPLFYSSQPEVTVAKDAFGVRLFPIIVLDTVCASSGSLDDLARVFPTPEKV 523 (630)
T ss_dssp H--------------------------TTCCCCCCCSCSEEETTTTEEECCCSEEEECHHHHTTCCHHHHHHHCSSGGGE
T ss_pred H--------------------------cCceecccccchhhhhcCccccCCCCEEEEeccccccccHHHHHHHhCCCCCc
Confidence 9 899987 4666678888 89999999999999999 9999999999 78
Q ss_pred CCCCCceEEEEeceEEeeCeEEEEEEEEEcCCCCe----EEecCCeEEeCCee
Q 007115 562 SVSQKSTMVIKGRNVVLEDLSLNGALIIDSVDDAE----VCYIMPILRYGGQS 610 (617)
Q Consensus 562 ~i~~~s~L~v~g~~~~~~~v~l~G~v~I~a~~~~~----~~i~~~~~~~~~~~ 610 (617)
+|+++|+|+|+|+ ++++||.|+|+|+|.|++|++ +.+.. +|.+.|-.
T Consensus 524 ~i~~~S~L~veg~-v~~~~l~LdG~lvI~a~~~~~~~~~v~~~~-~v~n~g~~ 574 (630)
T 3ogz_A 524 HIDQHSTLIVEGR-VIIESLELYGALTIRGPTDSMALPHVVRNA-VVRNAGWS 574 (630)
T ss_dssp EECTTCEEEEESS-EEESCEEEESEEEEECCSSTTSCCEEECSE-EEECCCCE
T ss_pred eecCCcEEEEEEE-EEEEEEEEeeEEEEEcCCCCccCceEEecc-eEecCCcE
Confidence 9999999999999 999999999999999999999 88887 88887765
No 2
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A
Probab=100.00 E-value=3.7e-98 Score=820.70 Aligned_cols=455 Identities=16% Similarity=0.172 Sum_probs=378.8
Q ss_pred CCcccccccccCCCCHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccCCChhhhH
Q 007115 50 GQSHLFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTFIN 129 (617)
Q Consensus 50 gQ~HL~~~~~~l~~~~~e~~~L~~qL~~id~~~~~~l~~~~~~~~~~l~~s~~~~~~~~~~~p~vp~~~~l~~~~~~~~~ 129 (617)
-|.||+++|+++. +++|+.|.+|++.+ ...+++++... ....+|+.+.| +|++.+.+|.+. ..
T Consensus 52 ~~~~l~~~~~~l~--~~~~~~~~~el~~f-----------~~lf~r~l~~~-~~~~~~~~i~p-~p~~~~~~~~~l--~~ 114 (528)
T 3r3i_A 52 VKKELEKILTTAS--SHEFEHTKKDLDGF-----------RKLFHRFLQEK-GPSVDWGKIQR-PPEDSIQPYEKI--KA 114 (528)
T ss_dssp TTSSSTTTSSSCC--TTTTHHHHHHHHHH-----------HHHHHHHHHC--------CCCCC-CCTTTSEEHHHH--TT
T ss_pred HHHHHHHHHHhcC--HHHHHHHHHHHHHH-----------HHHHHHHHhhc-cCCCCHHHCcC-CCHHHccCHhhc--CC
Confidence 3999999999974 67899999999775 34555666543 24567999987 477777676432 22
Q ss_pred HHHH--hHHhhcceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCc
Q 007115 130 YEQA--GVKEAKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSD 207 (617)
Q Consensus 130 ~~~~--G~~~l~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~ 207 (617)
|+.. ...+++|+|||+||||||||||+++||+++|+. +++||||++++||++++++|+ +.||||||||+
T Consensus 115 ~~~~~~~~~~l~kvavvlLaGGlGTRLG~~~PK~~i~V~--sgktflql~~eqI~~l~~~~g-------~~IPl~IMTS~ 185 (528)
T 3r3i_A 115 RGLPDNISSVLNKLVVVKLNGGLGTSMGCKGPKSLIGVR--NENTFLDLTVQQIEHLNKTYN-------TDVPLVLMNSF 185 (528)
T ss_dssp SCCCCSSCTTCTTEEEEEECCCBCTTTTCSSBGGGSEEE--TTEEHHHHHHHHHHHHHHHHT-------CCCCEEEEECT
T ss_pred ccccchhhhhcCceEEEEeCCCCccccCCCCCccceecC--CCCcHHHHHHHHHHHHHHHhC-------CCCCEEEEecc
Confidence 2222 345678999999999999999999999999996 899999999999999999886 58999999999
Q ss_pred cchHHHHHHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCC----CCCccccccCCCchhhHhhhhcChhHHHHH
Q 007115 208 DTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPK----NKYRIQTKPHGHGDVHALLYSSGLLKEWHD 283 (617)
Q Consensus 208 ~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~----~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~ 283 (617)
+||++|++||++|+||| .+|++|+|+++||++. +|++++... ++++++|+|+||||+|.+|++||+|++|++
T Consensus 186 ~T~~~T~~~f~k~~~fg---~~V~~F~Q~~~P~i~~-dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~ 261 (528)
T 3r3i_A 186 NTDEDTKKILQKYNHCR---VKIYTFNQSRYPRINK-ESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIG 261 (528)
T ss_dssp TTHHHHHSSCGGGTTSS---CCEEEEECCCBCCEET-TTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHH
T ss_pred chhHHHHHHHHhcCccC---CCeEEEEeCCeeeEec-CCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHh
Confidence 99999999999999998 5899999999999974 788888321 177999999999999999999999999999
Q ss_pred cCceEEEEEeCCCccccccchHHHHHHhhc----CCceeEEeeeCC-cccccceEEEEecCCCceeEEEEeecCCCHHHh
Q 007115 284 AGLKWVLFFQDTNGLLFKAIPASLGVSATK----QYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLR 358 (617)
Q Consensus 284 ~G~eyi~v~~vDN~L~~~~DP~~lG~~~~~----~~d~~~kvv~r~-~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~ 358 (617)
+|+||+||+||||++++ +||.||||++.+ +++|++|||+|+ |.|++|++|.. ||++++ |||+|++++..
T Consensus 262 ~Gieyi~v~nvDNlga~-vDp~~Lg~~~~~~~~~~~d~~~kVv~Kt~~dek~Gvl~~~---dGk~~v--vEyseip~e~~ 335 (528)
T 3r3i_A 262 EGKEYIFVSNIDNLGAT-VDLYILNHLMNPPNGKRCEFVMEVTNKTRADVKGGTLTQY---EGKLRL--VEIAQVPKAHV 335 (528)
T ss_dssp TTCCEEEEEETTBTTCC-CCHHHHHHHSSCSSSCCCSEEEEECCCCTTCCSSCEEECS---SSSCEE--ECTTSSCGGGT
T ss_pred cCCEEEEEEccCCcccc-cCHHHHHHHHhcccccCCcEEEEEeEccccCCcccEEEEE---CCeEEE--EEecCCChhHh
Confidence 99999999999997765 699999999998 999999999985 88999999864 999887 99999987643
Q ss_pred hcCCCCCCCccCCCCCCCc-cceeeeeeehhhhHHHHhhcCCccccccCCcccCCCCCcccCcchhhhhhcccccCCCCC
Q 007115 359 ATGFPDGDVNCETGYSPFP-GNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPS 437 (617)
Q Consensus 359 ~~~~~~g~l~~~~gf~~f~-gNinn~~~~L~~~~~~l~~~~~~l~~~vnpk~~d~~~~~~~~~~kLE~~m~D~~~~f~~~ 437 (617)
.+++|++.|+ ||||||||+|++++++++...+.||+|+|||+.|.+ ++++|||++|||++++|+.
T Consensus 336 ---------~~~~g~~~f~~~Ntnnlw~~L~~L~~v~~~~~l~Lp~ivn~K~vd~~----~~viqlEt~igd~i~~f~~- 401 (528)
T 3r3i_A 336 ---------DEFKSVSKFKIFNTNNLWISLAAVKRLQEQNAIDMEIIVNAKTLDGG----LNVIQLETAVGAAIKSFEN- 401 (528)
T ss_dssp ---------TTSSCSSSCCCCEEEEEEEEHHHHHHHHHTTCCCCCCEEEEECCSSS----SCEEEEEBCSTTCSTTSSS-
T ss_pred ---------hccCCcccCCeEEEEEEEEEHHHHHHHHHhCCCCCCceecCcccCCC----CCEEEeHHHHHHHHHhccC-
Confidence 2345554554 799999999999999999888889999999998854 3688999999999999854
Q ss_pred CceeEEEecCCceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHhhccccccccccCCchhHHHhhhhcccc
Q 007115 438 AKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKVTRVSLSYCKNYSSELFWFLILSTCQA 517 (617)
Q Consensus 438 ~~~g~~~V~R~~~FsPvKN~~~~~~~~~~g~~~dsp~t~~~dl~~~~~~~L~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 517 (617)
. ..++||| +||+||||++|+ .+++ ||+|.++.
T Consensus 402 -~-~~i~VpR-~rF~PvKn~sdL-------------------------ll~~-----Sdly~l~~--------------- 433 (528)
T 3r3i_A 402 -S-LGINVPR-SRFLPVKTTSDL-------------------------LLVM-----SNLYSLNA--------------- 433 (528)
T ss_dssp -C-CCEECCG-GGCCBCCSHHHH-------------------------HHHH-----STTSEEET---------------
T ss_pred -c-EEEEEeh-HHcccccchHHH-------------------------HHHh-----cceeEeeC---------------
Confidence 2 3459999 569999999986 3445 59999974
Q ss_pred CeeecCccccccCCeeecCCCeEEEcCCCCCCHHHHHhhcCCCCCCCCCceEEEEeceEEeeCeEEEEEEEEEcCCCCeE
Q 007115 518 GAQVDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEIKNKVSGSCSVSQKSTMVIKGRNVVLEDLSLNGALIIDSVDDAEV 597 (617)
Q Consensus 518 g~~~~~~~~~~~~~~~~~~~P~i~l~p~f~~~~~~~~~r~~~~~~i~~~s~L~v~g~~~~~~~v~l~G~v~I~a~~~~~~ 597 (617)
|..+.+|.| ..+..|.|.|+|. ++++++|.+||+++|+|.++++|+|+|||+||+||+|+|+|+|+|++|.++
T Consensus 434 g~l~~~~~r------~~~~~P~v~L~~~-~~~v~~f~~rf~~iP~l~~~~~LtV~Gdv~fg~~v~l~G~v~i~~~~g~~~ 506 (528)
T 3r3i_A 434 GSLTMSEKR------EFPTVPLVKLGSS-FTKVQDYLRRFESIPDMLELDHLTVSGDVTFGKNVSLKGTVIIIANHGDRI 506 (528)
T ss_dssp TEEECCSSC------SSCCCCEEEECTT-SCSHHHHHHHCSSCCEEEEEEEEEEESEEECCTTCEEEEEEEEECCTTCEE
T ss_pred CeEEecccc------cCCCCCEEEeCcc-cCcHHHHHHhCCCCCCcccCCEEEEecceEECCCcEEEEEEEEEcCCCCce
Confidence 444456765 3556799999999 579999999999999999999999999999999999999999999999999
Q ss_pred EecCCeEEeCCe
Q 007115 598 CYIMPILRYGGQ 609 (617)
Q Consensus 598 ~i~~~~~~~~~~ 609 (617)
+||+|.|..++-
T Consensus 507 ~ip~g~~len~~ 518 (528)
T 3r3i_A 507 DIPPGAVLENKI 518 (528)
T ss_dssp ECCTTCEEEEEE
T ss_pred ecCCCCEEeccE
Confidence 999999888754
No 3
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}
Probab=100.00 E-value=5.1e-97 Score=806.65 Aligned_cols=440 Identities=18% Similarity=0.162 Sum_probs=378.6
Q ss_pred cHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccCCChhhhHHHHHhHHhhcceEEEEEcCCcCCcCCccCCcccCC
Q 007115 85 GLKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKVALP 164 (617)
Q Consensus 85 ~l~~~~~~~~~~l~~s~~~~~~~~~~~p~vp~~~~l~~~~~~~~~~~~~G~~~l~kvavvlLaGGlGTRLG~~~pK~~lp 164 (617)
.+..|...+.++++.. .+..+|+.+.| |. .+.+|++..... .|+++|+|+|||+||||||||||+++||+++|
T Consensus 28 ~~~~f~~~~~~~~~~~-~~~i~~~~i~p--~~-~~~~~~~l~~~~---~G~~~L~kvavvlLaGGlGTRLG~~~pKg~~~ 100 (484)
T 3gue_A 28 CIHIFLIQHALVRKGE-TGYIPEKSISP--VE-SLPFLQGIETKG---ENTALLRQAVVLKLNGGLGTGMGLNGPKSLLQ 100 (484)
T ss_dssp HHHHHHHHHHHHHTTC-CCCCCGGGCEE--CC-CCCBHHHHCCSS---CCHHHHTTEEEEEEECCCCGGGTCSSCGGGSE
T ss_pred HHHHHHHHHHHHhcCC-CCccCHhhCCC--hh-ccCChhhcCCch---HHHHHHhhcEEEEEcCCcccccCCCCCceeee
Confidence 3456777777776553 35689999987 33 444553321111 69999999999999999999999999999999
Q ss_pred cccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEeCceeeEecC
Q 007115 165 AETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDN 244 (617)
Q Consensus 165 v~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~ 244 (617)
++ +++||||++++||++++++++ +.||||||||+.||++|++||++|+|||+++++|++|+|+++||++.+
T Consensus 101 v~--sgksflql~~eqI~~l~~~~~-------~~iPl~IMTS~~T~~~T~~~~~k~~~Fgl~~~~v~~F~Q~~~P~i~~d 171 (484)
T 3gue_A 101 VK--NGQTFLDFTALQLEHFRQVRN-------CNVPFMLMNSFSTSGETKNFLRKYPTLYEVFDSDIELMQNRVPKIRQD 171 (484)
T ss_dssp EE--TTEEHHHHHHHHHHHHHHHHT-------CCCCEEEEECTTTHHHHHHHGGGCHHHHTTCCCCCEEECCCEECEETT
T ss_pred cC--CCCcHHHHHHHHHHHHHHHcC-------CCceEEEECCcchhHHHHHHHHhCcccCCCccceEEEEeCceeeEecC
Confidence 98 899999999999999999986 589999999999999999999999999999999999999999999865
Q ss_pred CCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCceeEEeeeC
Q 007115 245 DARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR 324 (617)
Q Consensus 245 ~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r 324 (617)
++.+++++ ++++++|+|+||||+|.+|++||+|++|+++|+||+||+|||| |++++||.||||++++++||++|||+|
T Consensus 172 g~~~i~~~-~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDN-L~a~~Dp~~lG~~~~~~~d~~~kvv~K 249 (484)
T 3gue_A 172 NFFPVTYE-ADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDN-LGATLDVRLLDYMHEKQLGFLMEVCRR 249 (484)
T ss_dssp TCCBCCCT-TCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTC-TTCCCCHHHHHHHHHTTCSEEEEEEEC
T ss_pred CCceeecC-CCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCC-cccccCHHHHHHHHhcCCCEEEEEEEC
Confidence 55555443 4569999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred Cc-ccccceEEEE-------ecCCCceeEEEEeecCCCHHHhhc-CCCCCCCccCCCCCCCccceeeeeeehhhhHHHHh
Q 007115 325 KA-KEAIGGITRL-------THADGRSMVINVEYNQLDPLLRAT-GFPDGDVNCETGYSPFPGNINQLILELGPYMEELK 395 (617)
Q Consensus 325 ~~-~E~vG~i~~~-------~~~dG~~~v~nVEYsel~~~l~~~-~~~~g~l~~~~gf~~f~gNinn~~~~L~~~~~~l~ 395 (617)
++ .|++|++|++ .+.||++++ +||+|+++..... ++ .+||++| ||||+|++++++++.++
T Consensus 250 t~~dekgG~l~~~~~~~~~~~~~dG~~~v--vEyseip~e~~~~f~~-------~~g~~~F--NtnNi~~~l~~l~~~l~ 318 (484)
T 3gue_A 250 TESDKKGGHLAYKDVIDETTGQTRRRFVL--RESAQCPKEDEDSFQN-------IAKHCFF--NTNNIWINLMELKKMMD 318 (484)
T ss_dssp CTTCCSSEEEEEEC--------CCCEEEE--EEGGGSCGGGHHHHTC-------TTTSCEE--EEEEEEEEHHHHHHHHH
T ss_pred CCCCCceeEEEEEccccccccCCCCCEEE--EEeccCCHHHHhhhcC-------CCCceEe--EeeeEEEEHHHHHHHHH
Confidence 75 5667778875 245899987 9999998876543 32 3457777 99999999999999998
Q ss_pred hcC--CccccccCCcccCCCCCcccCcchhhhhhcccccCCCCCCceeEEEecCCceeecccCCCcccccCCCCCCCCCh
Q 007115 396 KTG--GAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSA 473 (617)
Q Consensus 396 ~~~--~~l~~~vnpk~~d~~~~~~~~~~kLE~~m~D~~~~f~~~~~~g~~~V~R~~~FsPvKN~~~~~~~~~~g~~~dsp 473 (617)
+.. ..||+|+|+|+.|..++..++++|||+||||++++| .++++++|+| +||+||||++|+
T Consensus 319 ~~~g~~~Lp~~vn~K~id~~k~~~~~~iqlE~~~~d~~~~~---~~~~~ieV~R-~rF~PvKn~sdL------------- 381 (484)
T 3gue_A 319 EQLGVLRLPVMRNPKTVNPQDSQSTKVYQLEVAMGAAISLF---DRSEAVVVPR-ERFAPVKTCSDL------------- 381 (484)
T ss_dssp HTTTCCCCCCEEEEEESSTTCTTSCEEEEEECCGGGGGTTS---SSEEEEECCG-GGCCCCSSHHHH-------------
T ss_pred hccCcCCCCcEeccceecCCCCCCCCEeehHHHHHHHHHhC---CccEEEEECh-hhccccccchHH-------------
Confidence 863 467999999999988888889999999999999987 3577889999 899999999985
Q ss_pred hhHHHHHHHHHHHHHHhhccccccccccCCchhHHHhhhhccccCeeecCccccccCCeeecCCCeEEEcCCCCCCHHHH
Q 007115 474 TSGEMAIYCANSLILRKVTRVSLSYCKNYSSELFWFLILSTCQAGAQVDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEI 553 (617)
Q Consensus 474 ~t~~~dl~~~~~~~L~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~P~i~l~p~f~~~~~~~ 553 (617)
.+++ ||+|.++++ |..+.+|.+ ....|.|.|+|.+++++++|
T Consensus 382 ------------l~~~-----Sdly~l~~~--------------~~l~~~~~~-------~~~~P~v~L~~~~~~~v~~f 423 (484)
T 3gue_A 382 ------------LALR-----SDAYQVTED--------------QRLVLCEER-------NGKPPAIDLDGEHYKMIDGF 423 (484)
T ss_dssp ------------HHHH-----STTEEECTT--------------SCEEECGGG-------TTCCCEEEECTTTSSSHHHH
T ss_pred ------------HHHh-----hhceeccCC--------------ceEEecccc-------CCCCCeEEECchhcCcHHHH
Confidence 3444 599999865 233436665 23579999999988999999
Q ss_pred HhhcCC-CCCCCCCceEEEEeceEEeeCeEEEEEEEEEcCCCCeEEecCCeEEeCC
Q 007115 554 KNKVSG-SCSVSQKSTMVIKGRNVVLEDLSLNGALIIDSVDDAEVCYIMPILRYGG 608 (617)
Q Consensus 554 ~~r~~~-~~~i~~~s~L~v~g~~~~~~~v~l~G~v~I~a~~~~~~~i~~~~~~~~~ 608 (617)
++||++ +|+|+++++|+|+|||+||+||+|+|+|+|+|++|.+++||+|.+..+.
T Consensus 424 ~~rf~~giPsl~~~~~L~V~Gdv~fg~~v~l~G~v~i~~~~g~~~~ip~g~~l~~~ 479 (484)
T 3gue_A 424 EKLVKGGVPSLRQCTSLTVRGLVEFGADVSVRGNVVIKNLKEEPLIIGSGRVLDNE 479 (484)
T ss_dssp HHHHTTCCCBCTTEEEEEEESSEEECTTCEEEEEEEEEECSSSCEEECTTCEEESC
T ss_pred HHhcCCCCCChhhCCEEEEecceEECCCcEEEEEEEEEcCCCCeeecCCCCEecce
Confidence 999998 8999999999999999999999999999999999999999999988874
No 4
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*
Probab=100.00 E-value=1.5e-87 Score=741.10 Aligned_cols=442 Identities=22% Similarity=0.315 Sum_probs=375.4
Q ss_pred hHHHHHHHHHHCCCcccccccccCCCCHHHHHHHHHHHhhc-CCCCCccHHHHHHHHHHHHhhccCCCCCCCC-CCCCCC
Q 007115 38 EQVELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKL-NSSYPGGLKSYIKTARELLADSKAGKNPFDG-FTPSVP 115 (617)
Q Consensus 38 ~~~~l~~~L~~~gQ~HL~~~~~~l~~~~~e~~~L~~qL~~i-d~~~~~~l~~~~~~~~~~l~~s~~~~~~~~~-~~p~vp 115 (617)
....|+++|+++||+|||+||+++ +++||++|++||.++ |+. ++..|++++.+ .++. .++++ +. |+|
T Consensus 5 ~~~~l~~~l~~~gQ~hl~~~~~~l--~~~ek~~l~~ql~~~~d~~---~l~~~~~~~~~---~~~~--~~~~~~i~-p~p 73 (486)
T 2yqc_A 5 SQQQIIDSFKQANQDQLFQYYDSL--TIDQQQEFIDQLSTIEEPA---KLISTVEQAIQ---FSQT--NSTSRNFT-QLP 73 (486)
T ss_dssp CHHHHHHHHHHTTCGGGGTTGGGS--CHHHHHHHHHHHHTSSSHH---HHHHHHHHHHH---HTC------CCCEE-CCC
T ss_pred hHHHHHHHHHHcCcHHHhhhhccC--CHHHHHHHHHHHHhCcCHH---HHHHHHHHHHh---cccc--cccccccc-CCC
Confidence 457899999999999999999996 699999999999999 863 57888888764 2221 23333 44 468
Q ss_pred CcccccC---CChhhhHHHHHhHHhhc--ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhh
Q 007115 116 TGEVLKF---GDDTFINYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCR 190 (617)
Q Consensus 116 ~~~~l~~---~~~~~~~~~~~G~~~l~--kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~ 190 (617)
++.+.++ +++++.+|++.|+++|+ |+|+|+||||+|||||+++||+++|+++++++||||+++++|++++++|.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavvlLaGG~GTRLg~~~PK~l~~v~l~~gk~~l~~~~e~l~~~~~~~~~ 153 (486)
T 2yqc_A 74 NEQTASTLDLSKDILQNWTELGLKAIGNGEVAVLLMAGGQGTRLGSSAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQ 153 (486)
T ss_dssp GGGEEETTTSCHHHHHHHHHHHHHHHHTTCEEEEEEEESBCGGGTCSSBGGGCBCCCTTCCBHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccCChHHHHHHHHHHHHHHhhCCeEEEEEcCCccccCCCCCCCccceecCCCCCcHHHHHHHHHHHHHHHhhh
Confidence 7766554 34567789999999996 899999999999999999999999999999999999999999999999854
Q ss_pred hccC--CcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEeCceeeEecCCC-ceecCCCCCCccccccCCCch
Q 007115 191 LAEG--KCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDA-RLAMDPKNKYRIQTKPHGHGD 267 (617)
Q Consensus 191 ~~~g--~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g-~~~l~~~~~~~i~~~P~GhGd 267 (617)
. +| +.+.||||||||++||+.|++||++|+|||++.++|+||+|+++||++. +| ++++ ++++.++|+|+||||
T Consensus 154 ~-~G~~~~~~ip~~ImtS~~t~~~t~~~~~~~~~fgl~~~~v~~f~Q~~~P~i~~-dg~~i~l--~~~~~i~~~P~G~Gg 229 (486)
T 2yqc_A 154 Y-LKSTKKPIINWYIMTSGPTRNATESFFIENNYFGLNSHQVIFFNQGTLPCFNL-QGNKILL--ELKNSICQSPDGNGG 229 (486)
T ss_dssp H-HTCSSCCCCEEEEEECGGGHHHHHHHHHHTGGGGSCGGGEEEEECCEEECBCT-TSSSBCE--EETTEECEEECCGGG
T ss_pred h-cCCCcCCccCEEEEECCCCHHHHHHHHhhccccCCCcceEEEEecccceeEcC-CCCcccc--CCCCccccCcCCchH
Confidence 3 33 4458999999999999999999999999999999999999999999965 88 9988 667899999999999
Q ss_pred hhHhhhhcChhHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCceeEEeeeC-CcccccceEEEEecCCCceeEE
Q 007115 268 VHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHADGRSMVI 346 (617)
Q Consensus 268 i~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r-~~~E~vG~i~~~~~~dG~~~v~ 346 (617)
+|.+|+++|+|++|+++|++|++|+|+||+|++++||.||||++.++++++++||+| .|.|++|++|.. ..||+.+|
T Consensus 230 i~~aL~~sG~Ld~l~~~G~~yi~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~Gvl~~~-~~dg~~~v- 307 (486)
T 2yqc_A 230 LYKALKDNGILDDLNSKGIKHIHMYCVDNCLVKVADPIFIGFAIAKKFDLATKVVRKRDANESVGLIVLD-QDNQKPCV- 307 (486)
T ss_dssp HHHHHHHTTHHHHHHHHTCCEEEEEETTBTTCCTTCHHHHHHHHHHTCSEEEEEEECCSTTCCCCEEEEE-TTTTEEEE-
T ss_pred HHHHHHHcCcHHHHHhcCCeEEEEECCCCceeeccCHHHHHHHHHcCCCEEEEEEEcCCCCCceeEEEEE-ecCCCEEE-
Confidence 999999999999999999999999999999999999999999999999999999998 588999999864 23788777
Q ss_pred EEeecCCCHHHhhcCCCC--CCCccCCCCCCCccceeeeeeehhhhHHHHhhcCCc---cccccCCc---ccCCCCC---
Q 007115 347 NVEYNQLDPLLRATGFPD--GDVNCETGYSPFPGNINQLILELGPYMEELKKTGGA---IKEFVNPK---YKDASKT--- 415 (617)
Q Consensus 347 nVEYsel~~~l~~~~~~~--g~l~~~~gf~~f~gNinn~~~~L~~~~~~l~~~~~~---l~~~vnpk---~~d~~~~--- 415 (617)
|||+|++++++...+++ |. +++.++|||||||+++++++++.+..+. ||+|+|+| |.|...+
T Consensus 308 -vEy~E~~~~~~~~~~~~~~~~------~~~~~~Ni~~~~~~l~~L~~~l~~~~~~~~~lp~~v~~Kki~~~d~~~g~~~ 380 (486)
T 2yqc_A 308 -IEYSEISQELANKKDPQDSSK------LFLRAANIVNHYYSVEFLNKMIPKWISSQKYLPFHIAKKKIPSLNLENGEFY 380 (486)
T ss_dssp -ECGGGSCHHHHHCEETTEEEE------ESSCEEEEEEEEEEHHHHHHHHHHHTTCTTTSCCEEEEECCCEECTTTCCEE
T ss_pred -EEEecCCHHHhhccccccccc------ccccceeEEEEEEeHHHHHHHHHhhcCcccCCcceEeccccCccccccCeec
Confidence 99999999887765443 32 2345789999999999999878776566 99999998 6675322
Q ss_pred --cccCcchhhhhhcccccCCCCCCceeEEEecCCceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHhhcc
Q 007115 416 --SFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKVTR 493 (617)
Q Consensus 416 --~~~~~~kLE~~m~D~~~~f~~~~~~g~~~V~R~~~FsPvKN~~~~~~~~~~g~~~dsp~t~~~dl~~~~~~~L~~~~~ 493 (617)
+.++++|||+||||++.+++. .++++++|+|++||+||||+.+.+ .|||+|||.|||++|++||++
T Consensus 381 ~p~~pn~~klE~~~~d~~~~~~l-~~~~~~~V~R~~~FsPvKn~~~~~--------~dsp~ta~~~l~~~~~~~l~~--- 448 (486)
T 2yqc_A 381 KPTEPNGIKLEQFIFDVFPSVEL-NKFGCLEVDRLDEFSPLKNADGAK--------NDTPTTCRNHYLERSSKWVIQ--- 448 (486)
T ss_dssp CCSSCCEEEEECCGGGGGGGSCG-GGEEEEEECHHHHCCBCCSCTTSS--------SSSHHHHHHHHHHHHHHHHHH---
T ss_pred cCCCCCeeeeeehHhhHHhhccc-CceEEEEECcccceeeecCCCCCC--------CCCHHHHHHHHHHHHHHHHHH---
Confidence 233578999999999887631 278899999999999999998764 899999999999999999999
Q ss_pred ccccccccCCchhHHHhhhhccccCeeecCccccccCCeeecCCCeEEEcCC
Q 007115 494 VSLSYCKNYSSELFWFLILSTCQAGAQVDDPVQEVFNGQEVEVWPRLTWKPK 545 (617)
Q Consensus 494 ~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~P~i~l~p~ 545 (617)
+|+.+.+.. .++..|.|.+.-+
T Consensus 449 -----------------------aG~~~~~~~-------~~eisp~~sy~ge 470 (486)
T 2yqc_A 449 -----------------------NGGVIDNQG-------LVEVDSKTSYGGE 470 (486)
T ss_dssp -----------------------TTCEECTTC-------CCBCCTTTCSSST
T ss_pred -----------------------CCCeecCCC-------cEEEcceeeECCC
Confidence 899984321 3566777766555
No 5
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*
Probab=100.00 E-value=9.2e-88 Score=742.51 Aligned_cols=444 Identities=18% Similarity=0.194 Sum_probs=364.0
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccCCChhhhHHHHHhHHhhcceEEEEEcCCcCCcCCccCCcccCCc
Q 007115 86 LKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKVALPA 165 (617)
Q Consensus 86 l~~~~~~~~~~l~~s~~~~~~~~~~~p~vp~~~~l~~~~~~~~~~~~~G~~~l~kvavvlLaGGlGTRLG~~~pK~~lpv 165 (617)
+..|...+.++++.+. +..+|+.+.| + +.+.++.+.+. ..|+++|+|+|||+||||+|||||+++||+++|+
T Consensus 29 ~~~f~~~~~~~~~~~~-~~i~~~~i~p--~-~~~~~~~~~~~----~~g~~~l~k~avViLAGGlGTRLg~~~PK~llpV 100 (505)
T 2oeg_A 29 IRTFIAQHVMVSKGET-GSIPDSAIMP--V-DSLDALDSLTI----ECDNAVLQSTVVLKLNGGLGTGMGLCDAKTLLEV 100 (505)
T ss_dssp HHHHHHHHHHHHTTCC-CCCCGGGCBC--C-CCCCBGGGCCC----CCCHHHHHTEEEEEEECCCCGGGTCCSCGGGSEE
T ss_pred HHHHHHHHHHHHhcCC-CCcChhhcCC--h-hhccChhhcch----hHHHHHHhcceEEEEcCCcccccCCCCCCccccc
Confidence 4567777777775532 4667888876 3 44555543221 3799999999999999999999999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH-hCCCCCCCCCcEEEEEeCceeeEecC
Q 007115 166 ETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE-SNSYFGMKPTQVKLLKQEKVACLDDN 244 (617)
Q Consensus 166 ~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~-~~~~FGl~~~~V~~F~Q~~~P~l~~~ 244 (617)
+ +++||||++++||++++.+|+ +.|||+||||++||+.|++||+ +|++||+++++|++|+|+++||++.+
T Consensus 101 ~--~gk~fLe~~ie~l~~~~~~~g-------~~ip~viMtS~~t~e~t~~~f~~~~~~fGl~~~~I~~f~Q~~~P~~~~~ 171 (505)
T 2oeg_A 101 K--DGKTFLDFTALQVQYLRQHCS-------EHLRFMLMDSFNTSASTKSFLKARYPWLYQVFDSEVELMQNQVPKILQD 171 (505)
T ss_dssp E--TTEEHHHHHHHHHHHHHHHTC-------TTCEEEEEECHHHHHHHHHHHHHHCHHHHTTCCCCCEEECCCEECEETT
T ss_pred C--CCCcHHHHHHHHHHHHHHhcC-------CCcCEEEEeCCCCHHHHHHHHhhhhhccCCCccceEEEEEcCEEeEecC
Confidence 8 899999999999999999986 4899999999999999999999 99999999999999999999999876
Q ss_pred CCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCceeEEeeeC
Q 007115 245 DARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR 324 (617)
Q Consensus 245 ~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r 324 (617)
+++++.. +++..++|+|+||||+|.+|++||++++|+++|++|++|+|+|| |++.+||.||||+.+++++++++|++|
T Consensus 172 ~~~~i~~-~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DN-L~~~~D~~llg~~~~~~ad~~~~v~~k 249 (505)
T 2oeg_A 172 TLEPAAW-AENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDN-LGATIDKRVLAYMEKEKIDFLMEVCRR 249 (505)
T ss_dssp TCCBCCC-TTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTC-TTCCCCHHHHHHHHHHTCSEEEEEEEC
T ss_pred CCceeec-CCCCccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCc-cccccCHHHHHHHHhcCCcEEEEEEEe
Confidence 6687733 33446999999999999999999999999999999999999999 899999999999999999999999999
Q ss_pred Cccc-ccceEEEEec-----CCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCc-cceeeeeeehhhhHHHHhhc
Q 007115 325 KAKE-AIGGITRLTH-----ADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFP-GNINQLILELGPYMEELKKT 397 (617)
Q Consensus 325 ~~~E-~vG~i~~~~~-----~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~-gNinn~~~~L~~~~~~l~~~ 397 (617)
+..+ +.|+++ .++ .||+. ||||+++ .+++.++.|+++..+++|.+.|+ ||||||||+|++|+++++.+
T Consensus 250 ~~~d~~~Gvl~-~~~~~~~~~dg~~---nvEyn~~-~llEyse~p~e~~~~~~g~~~f~~~Ninn~~~~l~~l~~~~~~~ 324 (505)
T 2oeg_A 250 TESDKKGGHLA-RQTVYVKGKDGQP---DAEKRVL-LLRESAQCPKADMESFQDINKYSFFNTNNLWIRLPVLLETMQEH 324 (505)
T ss_dssp CTTCCSSEEEE-EEEEEECCSSSCC---CEEEEEE-EEEEGGGSCGGGHHHHHCTTTTCEEEEEEEEEEHHHHHHHHHHT
T ss_pred cCCccceeEEE-EecccccccCCcc---ccccCce-eEEEeccCChhhhhcccCccccCeeEEEEEEEEHHHHHHHHhhh
Confidence 8765 555554 333 68983 2444433 23333333434444445656666 89999999999999999874
Q ss_pred C--CccccccCCcccCCCCCcccCcchhhhhhcccccCCCCCCceeEEEecCCceeecccCCCcccccCCCCCCCCChhh
Q 007115 398 G--GAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATS 475 (617)
Q Consensus 398 ~--~~l~~~vnpk~~d~~~~~~~~~~kLE~~m~D~~~~f~~~~~~g~~~V~R~~~FsPvKN~~~~~~~~~~g~~~dsp~t 475 (617)
. ..||+|+|+|+.+..++..++++||||||||++++|+ ++++++|+|+ ||+||||+++. .+
T Consensus 325 ~~~~~Lp~~vn~K~i~~~d~~~~~~~qlE~~~~d~~~~~~---~~~~~~V~R~-~FsPvKn~~dl-------------~~ 387 (505)
T 2oeg_A 325 GGTLPLPVIRNEKTVDSSNSASPKVYQLETAMGAAIAMFE---SASAIVVPRS-RFAPVKTCADL-------------LA 387 (505)
T ss_dssp TSSCCCCCEEEEEESSSSCTTSCEEEEEECCGGGGGGSCT---TCEEEECCGG-GCCCCSSHHHH-------------HH
T ss_pred cCccCCcceecccccCCCCCCCCCeEEEeEHHHHHHHhcC---cceEEEeccc-eeecccCCCCH-------------HH
Confidence 3 3579999999988766677789999999999999984 4678899996 99999997653 12
Q ss_pred HHHHHHHHHHHHHHhhccccccccccCCchhHHHhhhhccccCeeecCccccccCCeeecCCCeEEEcCCCCCCHHHHHh
Q 007115 476 GEMAIYCANSLILRKVTRVSLSYCKNYSSELFWFLILSTCQAGAQVDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEIKN 555 (617)
Q Consensus 476 ~~~dl~~~~~~~L~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~P~i~l~p~f~~~~~~~~~ 555 (617)
+ + ||+|.++.++ -..+ ++.+ +..+|.|+|+|.|++++++|++
T Consensus 388 ~------------~-----sdly~~~~~~-------------~~~~-~~~~-------~~~~p~i~l~p~~~~~~~~~~~ 429 (505)
T 2oeg_A 388 L------------R-----SDAYVVTDDF-------------RLVL-DDRC-------HGHPPVVDLDSAHYKMMNGFEK 429 (505)
T ss_dssp H------------H-----STTEEECTTC-------------CEEE-CGGG-------TTCCCEEEECHHHHSSHHHHHH
T ss_pred H------------H-----HHHHhhcCCc-------------eEEE-cccc-------cCcCCeEEEChhHcCcHHHHHH
Confidence 2 2 4777665321 1222 3332 2357999999999999999999
Q ss_pred hcCC-CCCCCCCceEEEEeceEEeeCeEEEEEEEEEcC-CCCeEEecCCeEEeCC
Q 007115 556 KVSG-SCSVSQKSTMVIKGRNVVLEDLSLNGALIIDSV-DDAEVCYIMPILRYGG 608 (617)
Q Consensus 556 r~~~-~~~i~~~s~L~v~g~~~~~~~v~l~G~v~I~a~-~~~~~~i~~~~~~~~~ 608 (617)
||++ +|+|+++|+|+|+|+++||+||+|+|+|+|+|+ +|.+++||+|.+..++
T Consensus 430 r~~~g~psi~~~~~L~v~G~~~f~~~v~l~G~v~i~a~~~~~~~~ip~g~~l~n~ 484 (505)
T 2oeg_A 430 LVQHGVPSLVECKRVTVKGLVQFGAGNVLTGTVTIENTDSASAFVIPDGAKLNDT 484 (505)
T ss_dssp HSTTCCCBCTTEEEEEEESSEECCTTCEEEEEEEEECCSCSSCEECCTTCEEESC
T ss_pred hcCCCCCccccCcEEEEEcceEEccCcEEEEEEEEEecCCCCcEEeCCCCEEeCc
Confidence 9998 799999999999999999999999999999999 9999999999777665
No 6
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*
Probab=100.00 E-value=1.8e-82 Score=703.02 Aligned_cols=421 Identities=22% Similarity=0.310 Sum_probs=359.9
Q ss_pred HHHHHHHHHHCCCcccccccccCCCCHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcc
Q 007115 39 QVELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLADSKAGKNPFDGFTPSVPTGE 118 (617)
Q Consensus 39 ~~~l~~~L~~~gQ~HL~~~~~~l~~~~~e~~~L~~qL~~id~~~~~~l~~~~~~~~~~l~~s~~~~~~~~~~~p~vp~~~ 118 (617)
...|+++|+++||+|||+||+++ +++||++|++||.++|+. ++..+++++.+.+..|+++....+.+.| +|.+.
T Consensus 3 ~~~l~~~l~~~gQ~hl~~~~~~l--~~~ek~~l~~ql~~~d~~---~~~~~~~~~~~~~~~s~~~~~~~~~i~p-~p~~~ 76 (505)
T 1jv1_A 3 INDLKLTLSKAGQEHLLRFWNEL--EEAQQVELYAELQAMNFE---ELNFFFQKAIEGFNQSSHQKNVDARMEP-VPREV 76 (505)
T ss_dssp HHHHHHHHHHTTCGGGGTTGGGS--CHHHHHHHHHHHHTCCHH---HHHHHHHHHHHCC-----------CCBC-CCGGG
T ss_pred HHHHHHHHHHcCcHHHHhhhhcC--CHHHHHHHHHHHHHhCHH---HHHHHHHHHHHhhhhccccCcccccccC-CChHh
Confidence 35699999999999999999996 699999999999999974 5777887776554443332222345554 68877
Q ss_pred cccC--CChhhhHHHHHhHHhhc--ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccC
Q 007115 119 VLKF--GDDTFINYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEG 194 (617)
Q Consensus 119 ~l~~--~~~~~~~~~~~G~~~l~--kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g 194 (617)
+.++ +++++.+|++.|+++|+ |+|+|+||||+|||||+++||+++|+++++++||||+++++|+++|+++.+. +|
T Consensus 77 ~~~~~~~~~~~~~~~~~Gl~~i~~~kvavViLAGG~GTRLg~~~PK~l~pv~~~~gk~~le~~~e~l~~lq~la~~~-~G 155 (505)
T 1jv1_A 77 LGSATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKY-YG 155 (505)
T ss_dssp EEETTTTGGGHHHHHHHHHHHHHTTCEEEEEECCCCCCTTSCSSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHH-HS
T ss_pred cccccCChHHHHHHHHHhHHhhccCceEEEEEcCCccccCCCCCCCccceeecCCCCcHHHHHHHHHHHHHHHHHHh-cC
Confidence 7666 34567789999999985 9999999999999999999999999988899999999999999999887543 45
Q ss_pred CcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhh
Q 007115 195 KCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYS 274 (617)
Q Consensus 195 ~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~ 274 (617)
+.+.|||+||||++||+.|++||++|+|||+++++|++|+|+++||++. +|++++ ++++.++|+|+||||+|.+|..
T Consensus 156 ~~~~ip~vImtS~~t~e~t~~~f~~~~~fGl~~~~I~~f~Q~~~P~i~~-~g~~~l--~~~~~~e~~P~GtGG~~~~L~~ 232 (505)
T 1jv1_A 156 NKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAMSF-DGKIIL--EEKNKVSMAPDGNGGLYRALAA 232 (505)
T ss_dssp SCCCCCEEEEECTTTHHHHHHHHHHTGGGGSCGGGEEEEECCEEECEET-TSCBCE--EETTEECEEECCGGGHHHHHHH
T ss_pred CCccceEEEEecCCCHHHHHHHHHhhhhcCCCcCceEEEEecceEEEcC-CCcccc--cCCcccccCCCCchHHHHHHHH
Confidence 4468999999999999999999999999999999999999999999975 899998 6788999999999999999999
Q ss_pred cChhHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCceeEEeeeC-CcccccceEEEEecCCCceeEEEEeecCC
Q 007115 275 SGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHADGRSMVINVEYNQL 353 (617)
Q Consensus 275 sG~ld~l~~~G~eyi~v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r-~~~E~vG~i~~~~~~dG~~~v~nVEYsel 353 (617)
+|+|++|+++|++|++|+|+||+|++++||.|+||++.++++++++|++| .+.+++|++|.. ||+.++ |||+|+
T Consensus 233 sg~L~~l~~~g~e~~~V~n~Dn~L~~~~d~~~lg~~~~~~~~~~~~v~~k~~~~e~~Gvl~~~---dg~~~v--vEy~E~ 307 (505)
T 1jv1_A 233 QNIVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRV---DGVYQV--VEYSEI 307 (505)
T ss_dssp TTHHHHHHHTTCCEEEEEETTBTTCCTTCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEE---TTEEEE--ECGGGS
T ss_pred cCcHHHHHhcCCCEEEEEECCccccccchHHHHHHHHHcCCCEEEEEEEccCCccCcceEEEE---CCeEEE--EEEeeC
Confidence 99999999999999999999999999999999999999999999999995 688999999865 898876 999999
Q ss_pred CHHHhhcCCCCCCCccCCCCCCCccceeeeeeehhhhHHHHhhcCCccccccCCc---ccCCCCCc----ccCcchhhhh
Q 007115 354 DPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPK---YKDASKTS----FKSSTRLECM 426 (617)
Q Consensus 354 ~~~l~~~~~~~g~l~~~~gf~~f~gNinn~~~~L~~~~~~l~~~~~~l~~~vnpk---~~d~~~~~----~~~~~kLE~~ 426 (617)
+++.+..++++|.+. +.++|||||||++++++++.+...+.||+|+|+| |.|.++.. .++++|||+|
T Consensus 308 p~~~~~~~~~~g~~~------~~~~N~~~~~f~l~~L~~i~~~~~~~l~~hv~~Kkip~~d~~g~~v~P~~pn~~klE~~ 381 (505)
T 1jv1_A 308 SLATAQKRSSDGRLL------FNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVDTQGQLIKPDKPNGIKMEKF 381 (505)
T ss_dssp CHHHHHCBCTTSSBS------SCEEEEEEEEEEHHHHHHHHHTTGGGCCCEEEEECCCEECTTSCEECCSSCCEEEEECC
T ss_pred CHHHhhhcccccccc------cceeeEEEEEecHHHHHHHHHhhcccCCceecccccccccCCCCCcCCCCCCceeHHHH
Confidence 999887776655443 3367999999999999888876667899999998 55643322 2345799999
Q ss_pred hcccccCCCCCCceeEEEecCCceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHh
Q 007115 427 MQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRK 490 (617)
Q Consensus 427 m~D~~~~f~~~~~~g~~~V~R~~~FsPvKN~~~~~~~~~~g~~~dsp~t~~~dl~~~~~~~L~~ 490 (617)
|||++.+| .++++++|+|++||+||||+.+.+ | .|||.|||+|||++|++||++
T Consensus 382 i~d~~~~~---~~~~~~~V~R~~~FsPvKn~~~~~-----~--~dsp~ta~~~l~~~~~~~l~~ 435 (505)
T 1jv1_A 382 VFDIFQFA---KKFVVYEVLREDEFSPLKNADSQN-----G--KDNPTTARHALMSLHHCWVLN 435 (505)
T ss_dssp GGGGGGGC---SSEEEEEECHHHHCCBCCSCTTSS-----S--SSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhc---CceEEEEECcccceeeccCCCCCC-----C--CCCHHHHHHHHHHHHHHHHHH
Confidence 99998876 468889999988999999999753 2 799999999999999999998
No 7
>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250, UDP, putative UDP-glucose pyrophosphorylase; HET: UPG U5P; 1.64A {Arabidopsis thaliana} SCOP: b.81.1.4 c.68.1.5 PDB: 2icx_A* 1z90_A 2q4j_A
Probab=100.00 E-value=1e-79 Score=675.20 Aligned_cols=452 Identities=16% Similarity=0.178 Sum_probs=373.9
Q ss_pred HHHHHHHHHhhcCCCCCccHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccCCChhh-hHHHHHhHHhhcceEEEE
Q 007115 67 EKRAFFDQVAKLNSSYPGGLKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTF-INYEQAGVKEAKNAAFVL 145 (617)
Q Consensus 67 e~~~L~~qL~~id~~~~~~l~~~~~~~~~~l~~s~~~~~~~~~~~p~vp~~~~l~~~~~~~-~~~~~~G~~~l~kvavvl 145 (617)
+..+|...+..-+....-.+..|.+.++++++.+ ...++|+.+.| +|++.+.++++... .++++.|+++++|+|+|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~i~p-~~~~~~~~~~~~~~~~~~~~~g~~~l~k~~vvi 84 (469)
T 2icy_A 7 NLPQLKSAVDGLTEMSESEKSGFISLVSRYLSGE-AQHIEWSKIQT-PTDEIVVPYEKMTPVSQDVAETKNLLDKLVVLK 84 (469)
T ss_dssp CHHHHHHHHHHCTTSCHHHHHHHHHHHHHHC-------CCGGGCBC-CCTTTEEEGGGSCCCCSCHHHHHHHHTTEEEEE
T ss_pred HHHHHHhhcCchhccchhhHHHHHHHHHHHHhcc-CCCCccccccc-CCcccccChhhcccchhhHHHHHHhhccceEEE
Confidence 4455666655433332233456667777776543 23578898887 68877777755332 456778999999999999
Q ss_pred EcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCCCCCC
Q 007115 146 VAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGM 225 (617)
Q Consensus 146 LaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl 225 (617)
||||+|||||++.||+++|+. +++||||++++||++++.+|+ ..|||+||||++||+.|++||++|++||+
T Consensus 85 LAGGlGTRLg~~~PK~llpv~--~gkp~Le~~i~~l~~~~~~~G-------~~ip~vimts~~t~e~t~~~f~~~~~fG~ 155 (469)
T 2icy_A 85 LNGGLGTTMGCTGPKSVIEVR--DGLTFLDLIVIQIENLNNKYG-------CKVPLVLMNSFNTHDDTHKIVEKYTNSNV 155 (469)
T ss_dssp EECCBSGGGTCCSBGGGSEEE--TTEEHHHHHHHHHHHHHHHHS-------CCCCEEEEECTTTHHHHHHHHGGGTTSSS
T ss_pred EcCCccccCCCCCCccccccC--CCCCHHHHHHHHHHHHHHhcC-------CCccEEEEeCCCCHHHHHHHHHhcccCCc
Confidence 999999999999999999995 799999999999999998886 47999999999999999999999999998
Q ss_pred CCCcEEEEEeCceeeEecCCCceecC-CCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccccccch
Q 007115 226 KPTQVKLLKQEKVACLDDNDARLAMD-PKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIP 304 (617)
Q Consensus 226 ~~~~V~~F~Q~~~P~l~~~~g~~~l~-~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~~~~DP 304 (617)
+|++|+|+++||++. +|++++. +.+++.++|+|+||||+|.+|+++|++++|+++|++|++|+|+|| |++.+||
T Consensus 156 ---~I~~f~Q~~~P~i~~-e~~~~l~~~~~~~~~e~~P~GtGG~~~~L~~sGll~~l~~~G~e~~~V~n~Dn-L~~~~d~ 230 (469)
T 2icy_A 156 ---DIHTFNQSKYPRVVA-DEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDN-LGAIVDL 230 (469)
T ss_dssp ---CEEEEECCCEECEET-TTTEEGGGGTCCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTB-TTCCCCH
T ss_pred ---eEEEEEecceeeEcc-ccCccccCCCCCccccCCcCCchHHHHHHHhcCcHHHHHhcCCCEEEEEECCc-CCcccCH
Confidence 799999999999975 7888883 233478999999999999999999999999999999999999999 8999999
Q ss_pred HHHHHHhhcCCceeEEeeeCC-cccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCccceeee
Q 007115 305 ASLGVSATKQYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNINQL 383 (617)
Q Consensus 305 ~~lG~~~~~~~d~~~kvv~r~-~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gNinn~ 383 (617)
.|+||+.+++++++++|++|+ |.++.|+++.. ||+..+ +||+|+++...... .+...|++| |||||
T Consensus 231 ~ll~~~~~~~a~~t~~v~~k~~~~~~~Gvl~~~---dg~~~v--vE~~e~p~~~~~e~------k~~~~~~~~--N~g~y 297 (469)
T 2icy_A 231 TILKHLIQNKNEYCMEVTPKTLADVKGGTLISY---EGKVQL--LEIAQVPDEHVNEF------KSIEKFKIF--NTNNL 297 (469)
T ss_dssp HHHHHHHHHTCSEEEEEEECCTTCCSSCEEEEE---TTEEEE--ECGGGSCGGGHHHH------HSSSSCCEE--EEEEE
T ss_pred HHHHHHHHcCCCeeEEEEEeccCCCceeEEEEE---CCEEEE--EEEeccChhhhhhh------cccccccee--eEEEE
Confidence 999999999999999999986 56889998864 888776 99999987543210 011236644 99999
Q ss_pred eeehhhhHHHHhhcCCccccccCCcccCCCCCcccCcchhhhhhcccccCCCCCCceeEEEecCCceeecccCCCccccc
Q 007115 384 ILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAK 463 (617)
Q Consensus 384 ~~~L~~~~~~l~~~~~~l~~~vnpk~~d~~~~~~~~~~kLE~~m~D~~~~f~~~~~~g~~~V~R~~~FsPvKN~~~~~~~ 463 (617)
||++++++++++.....||.++|||+.|+ .+++|||+||||++.+|+ ++..++|+|+ ||+||||+++.
T Consensus 298 ~~~~~~L~~i~~~~~~~lp~~v~~K~id~-----~~~~klE~~~~D~~~~~~---~~~~~~V~R~-~F~PvKn~~dl--- 365 (469)
T 2icy_A 298 WVNLKAIKKLVEADALKMEIIPNPKEVDG-----VKVLQLETAAGAAIRFFD---NAIGVNVPRS-RFLPVKASSDL--- 365 (469)
T ss_dssp EEEHHHHHHHHHTTCCCCCCBCCEEEETT-----EEEECCBCCGGGGGGGST---TCEEEECCGG-GCCBCCSHHHH---
T ss_pred EEcHHHHHHHHhcccCCchhhccceecCC-----CceEeehHhhHHHHHhcC---CeEEEEechh-HcCcCCCHHHH---
Confidence 99999999988877778999999999972 368999999999998874 2344589995 89999998864
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhhccccccccccCCchhHHHhhhhccccCeeecCccccccCCeeecCCCeEEEc
Q 007115 464 VPKGNPYHSATSGEMAIYCANSLILRKVTRVSLSYCKNYSSELFWFLILSTCQAGAQVDDPVQEVFNGQEVEVWPRLTWK 543 (617)
Q Consensus 464 ~~~g~~~dsp~t~~~dl~~~~~~~L~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~P~i~l~ 543 (617)
..++ ||+|.++. |..+.++.+ .++..|.|.|+
T Consensus 366 ----------------------l~~~-----s~l~~~~~---------------g~~~~~~~~------~~~~~P~v~l~ 397 (469)
T 2icy_A 366 ----------------------LLVQ-----SDLYTLVD---------------GFVTRNKAR------TNPSNPSIELG 397 (469)
T ss_dssp ----------------------HHHH-----STTEEEET---------------TEEEECTTC------CSSSCCEEEEC
T ss_pred ----------------------HHHH-----HHHHHHhc---------------CcEEecCcc------cCCCCCeEEcC
Confidence 2333 48887753 444434443 36778999999
Q ss_pred CCCCCCHHHHHhhcCCCCCCCCCceEEEEeceEEeeCeEEEEEEEEEcCCCCeEEecCCeEEeCC
Q 007115 544 PKWGLTFSEIKNKVSGSCSVSQKSTMVIKGRNVVLEDLSLNGALIIDSVDDAEVCYIMPILRYGG 608 (617)
Q Consensus 544 p~f~~~~~~~~~r~~~~~~i~~~s~L~v~g~~~~~~~v~l~G~v~I~a~~~~~~~i~~~~~~~~~ 608 (617)
|+| +++++|.+||+++|+|.++|||+|+|||+||+||+|+|+|+|.|++|.+++||+|.+..+.
T Consensus 398 ~~~-~~v~~f~~rf~~~p~~~~~~~l~v~gdv~fg~~v~l~G~v~i~~~~~~~~~ip~g~~l~~~ 461 (469)
T 2icy_A 398 PEF-KKVATFLSRFKSIPSIVELDSLKVSGDVWFGSSIVLKGKVTVAAKSGVKLEIPDRAVVENK 461 (469)
T ss_dssp GGG-CSHHHHHHTBSSCCBCTTEEEEEEESEEEECSSCEEEEEEEEECCTTCEEEECTTCEEESC
T ss_pred hhh-hhHHHHHHhcCCCcccccCCeEEEEeeeEEcCCcEEEEEEEEEcCCCCeeecCCCCEeecc
Confidence 995 6999999999999999999999999999999999999999999999999999999988775
No 8
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}
Probab=100.00 E-value=2.4e-79 Score=657.78 Aligned_cols=335 Identities=20% Similarity=0.262 Sum_probs=300.3
Q ss_pred hhHHHHHhHHhhc--ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEe
Q 007115 127 FINYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIM 204 (617)
Q Consensus 127 ~~~~~~~G~~~l~--kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IM 204 (617)
.++|++.|+++|+ |+|||+||||||||||+++||+++|+++++++||||++++||+++|+++.+..+|..+.||||||
T Consensus 20 ~~~~~~~Gl~~i~~gkvavvlLAGG~GTRLG~~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IM 99 (405)
T 3oc9_A 20 TKEHYYRGLELISQGKTALITPAGGQGSRLGFEHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIHWFLM 99 (405)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEECCSBCTTTTCCSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEE
T ss_pred cHHHHHHHHHHHhcCceEEEEecCCCcccccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCCEEEE
Confidence 3689999999996 99999999999999999999999999999999999999999999999876533454579999999
Q ss_pred cCccchHHHHHHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHc
Q 007115 205 TSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDA 284 (617)
Q Consensus 205 TS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~ 284 (617)
||++||+.|++||++|+|||+++++|++|+|+++||+ +.+|++++ +++++++|+|+||||+|.+|+++|+|++|+++
T Consensus 100 tS~~t~e~t~~~f~~~~~fGl~~~~i~~f~Q~~~P~i-~~dg~i~l--~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~ 176 (405)
T 3oc9_A 100 TNEETIEEINNYFKEHQYFGLSSEQIHCFPQGMLPVV-DFNGKILY--EKKDKPYMAPNGHGGLFKALKDNGILEFMNEK 176 (405)
T ss_dssp ECTTTHHHHHHHHHHTGGGGSCTTSEEEEECCEEECB-CTTSCBCE--EETTEECEEECCGGGHHHHHHHTTHHHHHHHH
T ss_pred eCCccHHHHHHHHHhCcccCCCccceEEEeeCceeEE-ecCCCeec--CCCCccccccCCChHHHHHHHHCCcHHHHHhc
Confidence 9999999999999999999999999999999999999 57899999 67789999999999999999999999999999
Q ss_pred CceEEEEEeCCCccccccchHHHHHHhhcCCceeEEeeeCC-cccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCC
Q 007115 285 GLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFP 363 (617)
Q Consensus 285 G~eyi~v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~-~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~ 363 (617)
|+||+||+|+||+|++++||.|||||++++++|++|||+|+ |.|++|++|+. ||+++| |||+|++++ +..+++
T Consensus 177 Gieyi~v~nvDN~L~~~~Dp~~lg~~~~~~~d~~~kvv~k~~~dek~Gvl~~~---dg~~~v--vEysei~~e-~e~~~~ 250 (405)
T 3oc9_A 177 GIKYSVAHNVDNILCKDVDPNMIGYMDLLQSEICIKIVKKGFKEEKVGVLVKE---QERIKV--VEYTELTDE-LNKQLS 250 (405)
T ss_dssp TCCEEEEECTTBTTCCSSCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEE---TTEEEE--ECGGGCCTT-TTCBCT
T ss_pred CCEEEEEEeCCCcccccCCHHHHHHHHHcCCCEEEEEEECCCCCCccceEEEE---CCeeEE--EEEeeCCHH-HhhcCC
Confidence 99999999999999999999999999999999999999986 67999999976 999887 999999998 777766
Q ss_pred CCCCccCCCCCCCccceeeeeeehhhhHHHHhhcCCccccccCCccc---CCCCC----cccCcchhhhhhcccccCCCC
Q 007115 364 DGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYK---DASKT----SFKSSTRLECMMQDYPKTLPP 436 (617)
Q Consensus 364 ~g~l~~~~gf~~f~gNinn~~~~L~~~~~~l~~~~~~l~~~vnpk~~---d~~~~----~~~~~~kLE~~m~D~~~~f~~ 436 (617)
+|++. +.++||+||+|+++++++++ ...||.+++.|.. |..+. +.++++|||+||||+++++
T Consensus 251 ~g~l~------fn~~Ni~~h~fs~~fL~~i~---~~~l~~h~a~Kkip~~d~~g~~~~p~~~ngiklE~fifd~f~~~-- 319 (405)
T 3oc9_A 251 NGEFI------YNCGHISINGYSTSFLEKAA---EYQLPYHIAKKKVPFVNEQGIVIHPSENNGIKKEIFFFDVFPLA-- 319 (405)
T ss_dssp TSCBS------SCEEEEEEEEEEHHHHHHHT---TCCCCCEEEEECCCEECTTSCEECCSSCCEEEEECCGGGGGGGC--
T ss_pred CCcee------eccceeEeeecCHHHHHHhh---hccCCcEEeccccCccCCCCCCcccCCcceeehHHHHHHHHHhc--
Confidence 55543 22789999999999988887 2358999987743 53332 3346799999999997775
Q ss_pred CCceeEEEecCCceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHh
Q 007115 437 SAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRK 490 (617)
Q Consensus 437 ~~~~g~~~V~R~~~FsPvKN~~~~~~~~~~g~~~dsp~t~~~dl~~~~~~~L~~ 490 (617)
.++++++|+|++||+||||+++.+ .|||+|||+|++++|++||++
T Consensus 320 -~~~~~~eV~R~~eF~PlKn~~g~~--------~dsp~tar~~l~~~~~~wl~~ 364 (405)
T 3oc9_A 320 -TKVSIFEIQRFIEFSALKNSLNES--------FDNVNTVKRDWYRLNIYYLKK 364 (405)
T ss_dssp -SCEEEEECCHHHHCCBCCCCTTSS--------SSSHHHHHHHHHHHHHHHHHH
T ss_pred -cceEEEEEChHhcccceecCCCCC--------CCCHHHHHHHHHHHHHHHHHH
Confidence 568888999988999999999764 899999999999999999999
No 9
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-77 Score=661.00 Aligned_cols=455 Identities=18% Similarity=0.189 Sum_probs=369.3
Q ss_pred cccccccCCCCHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHhh-ccCCCCCCCCCCCCCCCcccccCCChhhhHHHH
Q 007115 54 LFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLAD-SKAGKNPFDGFTPSVPTGEVLKFGDDTFINYEQ 132 (617)
Q Consensus 54 L~~~~~~l~~~~~e~~~L~~qL~~id~~~~~~l~~~~~~~~~~l~~-s~~~~~~~~~~~p~vp~~~~l~~~~~~~~~~~~ 132 (617)
|-+.|+.+..++++|++|.+||..++ +.++++++. ++.+..+|+.+.| +|++.+.+|.+.. .++
T Consensus 20 l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~i~p-~~~~~~~~~~~~~--~~~- 84 (488)
T 2i5k_A 20 LNKLADSSKLDDAARAKFENELDSFF-----------TLFRRYLVEKSSRTTLEWDKIKS-PNPDEVVKYEIIS--QQP- 84 (488)
T ss_dssp TTCCC--------CCSCTHHHHHHHH-----------HHHHHHHHHHHSCCSCCGGGEEC-CCTTTEEEHHHHH--SSC-
T ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHH-----------HHHHHHHhcccccCCCccccccc-CChhcccChhhcc--cch-
Confidence 45566654322677888889887543 344555543 3345788999887 5777776664321 111
Q ss_pred HhHHhhcceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHH
Q 007115 133 AGVKEAKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSR 212 (617)
Q Consensus 133 ~G~~~l~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~ 212 (617)
.|..+++|+|||+||||+|||||++.||+++|+. +|+||||++++++++++..++ ..|||+||||++||+.
T Consensus 85 ~~~~~~~k~avViLAGG~GTRmgs~~PK~l~~V~--~gk~~Le~~i~~i~~l~~~~G-------~~Ip~vImts~~t~e~ 155 (488)
T 2i5k_A 85 ENVSNLSKLAVLKLNGGLGTSMGCVGPKSVIEVR--EGNTFLDLSVRQIEYLNRQYD-------SDVPLLLMNSFNTDKD 155 (488)
T ss_dssp CCSTTGGGEEEEEECCCBSGGGTCCSBSTTSCCB--TTBCHHHHHHHHHHHHHHHHT-------CCCEEEEECCTTTHHH
T ss_pred hhhhhcCCceEEEEcCCCcccCCCCCCccccccC--CCCcHHHHHHHHHHHhHHhcC-------CCccEEEEECCCCHHH
Confidence 3788888999999999999999999999999994 799999999999999988876 4799999999999999
Q ss_pred HHHHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecC-CCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEE
Q 007115 213 TQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMD-PKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLF 291 (617)
Q Consensus 213 T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~-~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v 291 (617)
|++||++|++||+ +|++|.|+++||++. +|++++. +.+++.++|+|+||||+|.+|+.+|++++|.++|++|++|
T Consensus 156 t~~~~~~~~~fg~---~i~~f~Q~~~P~i~~-d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V 231 (488)
T 2i5k_A 156 TEHLIKKYSANRI---RIRSFNQSRFPRVYK-DSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFV 231 (488)
T ss_dssp HHHHHGGGCSSSC---EEEEECCCCEECEET-TTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEE
T ss_pred HHHHHHhccccCc---eEEEEEeCccceEcc-ccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEE
Confidence 9999999999997 699999999999974 7888873 2234478999999999999999999999999999999999
Q ss_pred EeCCCccccccchHHHHHHhhcCCceeEEeeeC-CcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccC
Q 007115 292 FQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCE 370 (617)
Q Consensus 292 ~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r-~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~ 370 (617)
+|+|| |++.+||.+|||+..++++++++++++ .|.++.|++++. +|+..+ |||+|++++...... +.
T Consensus 232 ~ngDn-L~~~~d~~~L~~~~~~~a~~t~~v~~~~~p~~~yG~Iv~~---dG~~~i--VE~~e~~~e~~~~~~------~~ 299 (488)
T 2i5k_A 232 SNGDN-LGATVDLKILNHMIETGAEYIMELTDKTRADVKGGTLISY---DGQVRL--LEVAQVPKEHIDEFK------NI 299 (488)
T ss_dssp ECTTB-SSCCCCHHHHHHHHHSCCSEEEEEEECCGGGSSSCEEEEE---TTEEEE--ECGGGSCTTSHHHHT------CT
T ss_pred EeCCc-CCCcccHHHHHHHHhcCCcEEEEEEEecCCCCceeEEEEE---CCcEEE--EEeccCCHHHHhhcc------cc
Confidence 99999 999999999999999999999999997 588889988764 888555 999999886544321 11
Q ss_pred CCCCCCccceeeeeeehhhhHHHHhhcCCccccccCCcccCCCCCcccCcchhhhhhcccccCCCCCCceeEEEecCCce
Q 007115 371 TGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLA 450 (617)
Q Consensus 371 ~gf~~f~gNinn~~~~L~~~~~~l~~~~~~l~~~vnpk~~d~~~~~~~~~~kLE~~m~D~~~~f~~~~~~g~~~V~R~~~ 450 (617)
.+|+.| ||||+||+++++.+.+++....||+|+|+|+.+. .....+++||||||||++++|+ +...++|+|+ |
T Consensus 300 ~~~~~~--Ntgi~~f~~~~L~~~l~~~~~~lp~~v~~K~i~~-~~~~~~~~qlE~~~~d~~~~~~---~~~~~~V~R~-~ 372 (488)
T 2i5k_A 300 RKFTNF--NTNNLWINLKAVKRLIESSNLEMEIIPNQKTITR-DGHEINVLQLETACGAAIRHFD---GAHGVVVPRS-R 372 (488)
T ss_dssp TTCCEE--EEEEEEEEHHHHHHHHHTTCCCCCCBCCEECCCC------CEECCBCCGGGGGGGSS---SCEEEEECGG-G
T ss_pred cccCEE--EEEEEEEeHHHHHHHHhhccCCCcceecCccccC-CCCCCceEEeeehhhhHHhhcc---CceEEEeccc-c
Confidence 236644 9999999999999999987788999999998752 1223378999999999999984 3345589996 9
Q ss_pred eecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHhhccccccccccCCchhHHHhhhhccccCeeecCccccccC
Q 007115 451 YAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKVTRVSLSYCKNYSSELFWFLILSTCQAGAQVDDPVQEVFN 530 (617)
Q Consensus 451 FsPvKN~~~~~~~~~~g~~~dsp~t~~~dl~~~~~~~L~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 530 (617)
|+||||++++ .+++ |++|.++ +|..+.++.
T Consensus 373 F~PvKn~~~l-------------------------l~~~-----~~~~~~~---------------~g~~~~~~~----- 402 (488)
T 2i5k_A 373 FLPVKTCSDL-------------------------LLVK-----SDLFRLE---------------HGSLKLDPS----- 402 (488)
T ss_dssp CCBCCSHHHH-------------------------HHHT-----STTEEEE---------------TTEEEECTT-----
T ss_pred cccccCCccH-------------------------HHHH-----HHHHHHh---------------cCcEeecCC-----
Confidence 9999998763 2333 5888776 355544443
Q ss_pred CeeecCCCeEEEcCCCCCCHHHHHhhcCCCCCCCCCceEEEEeceEEeeCeEEEEEEEEEcCCCCeEEecCCeEEeCC
Q 007115 531 GQEVEVWPRLTWKPKWGLTFSEIKNKVSGSCSVSQKSTMVIKGRNVVLEDLSLNGALIIDSVDDAEVCYIMPILRYGG 608 (617)
Q Consensus 531 ~~~~~~~P~i~l~p~f~~~~~~~~~r~~~~~~i~~~s~L~v~g~~~~~~~v~l~G~v~I~a~~~~~~~i~~~~~~~~~ 608 (617)
.++..|.|.|+|.| +++++|.+||+++|+|.++++|+|+|||+||+||+|+|+|+|+|++|.+++||+|.+..+.
T Consensus 403 --~~e~~P~v~~~~~~-~~~~~~~~rf~~~p~i~~~~~l~v~Gdv~fg~~v~l~G~v~i~a~~~~~~~ip~g~~l~n~ 477 (488)
T 2i5k_A 403 --RFGPNPLIKLGSHF-KKVSGFNARIPHIPKIVELDHLTITGNVFLGKDVTLRGTVIIVCSDGHKIDIPNGSILENV 477 (488)
T ss_dssp --CCSSCCEEEECGGG-SSHHHHHHHCSSCCBCTTEEEEEEESSEEECTTCEEEEEEEEECCTTCCEEECTTCEEEEE
T ss_pred --cCCCCCeEEECCcc-cchhhHHhhcCCCccccccceEEEEeeeEEcCCcEEEEEEEEEcCCCCeEEeCCCCEEecc
Confidence 26678999999996 4899999999999999999999999999999999999999999999999999999777665
No 10
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Probab=98.44 E-value=2.3e-06 Score=94.28 Aligned_cols=190 Identities=19% Similarity=0.226 Sum_probs=122.5
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
.+|||+||||.||||....||.++|+. |++++++.++.+..+ + .--++|.++ +..+.++++|.+
T Consensus 12 ~~~vvILAaG~GtRm~~~~pK~l~pv~---gkp~i~~~l~~~~~~----g--------~~~i~vv~~-~~~~~i~~~~~~ 75 (501)
T 3st8_A 12 DTAVLVLAAGPGTRMRSDTPKVLHTLA---GRSMLSHVLHAIAKL----A--------PQRLIVVLG-HDHQRIAPLVGE 75 (501)
T ss_dssp CEEEEEEECSCCGGGCCSSCGGGCEET---TEEHHHHHHHHHHHH----C--------CSEEEEEEC-TTHHHHHHHHHH
T ss_pred CceEEEECCcCcccCCCCCCHHHeEEC---ChhHHHHHHHHHHhC----C--------CCEEEEEeC-CCHHHHHHHHHH
Confidence 689999999999999999999999996 999999999988655 1 223566665 556789999986
Q ss_pred C-CCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchh-hHhhhhcChhHHHHHcCceEEEEEeCCCc
Q 007115 220 N-SYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDV-HALLYSSGLLKEWHDAGLKWVLFFQDTNG 297 (617)
Q Consensus 220 ~-~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi-~~aL~~sG~ld~l~~~G~eyi~v~~vDN~ 297 (617)
. +.||. +|.+..|. .|-|-|+- +.++. .+...-...+.+.+-|.+
T Consensus 76 ~~~~~~~---~i~~~~q~------------------------~~lGTa~Av~~a~~------~l~~~~~~~~lvl~gd~~ 122 (501)
T 3st8_A 76 LADTLGR---TIDVALQD------------------------RPLGTGHAVLCGLS------ALPDDYAGNVVVTSGDTP 122 (501)
T ss_dssp HHHHHTS---CCEEEECS------------------------SCCCHHHHHHHHHT------TSCTTCCSEEEEEETTCT
T ss_pred HHHhcCC---cEEEEEcC------------------------CCCCcHHHHHHHHH------HhccccccceeeecCcce
Confidence 3 34443 34444442 23455553 33322 122223456777777776
Q ss_pred cccccc-hHHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCC
Q 007115 298 LLFKAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPF 376 (617)
Q Consensus 298 L~~~~D-P~~lG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f 376 (617)
|...-+ -.++-++..+++++.+.+++-.....-|.+.+ +.+|+.. ..||..+-++.-.. ..
T Consensus 123 l~~~~~~~~l~~~h~~~~~~~ti~~~~~~dp~~yG~i~~--~~~g~v~-~ivEk~~~~~~~~~---------------i~ 184 (501)
T 3st8_A 123 LLDADTLADLIATHRAVSAAVTVLTTTLDDPFGYGRILR--TQDHEVM-AIVEQTDATPSQRE---------------IR 184 (501)
T ss_dssp TCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEE--CTTCCEE-EEECGGGCCHHHHH---------------CC
T ss_pred eecHHHHHHHHHHHhhccccceEeeeccCCchhcccccc--ccceeEE-eeccccCCChhhcc---------------ce
Confidence 654322 34677888888988887777544445676654 4566643 12665444333111 11
Q ss_pred ccceeeeeeehhhhHHHHhh
Q 007115 377 PGNINQLILELGPYMEELKK 396 (617)
Q Consensus 377 ~gNinn~~~~L~~~~~~l~~ 396 (617)
-.|+..+.|+-+.+.+.+.+
T Consensus 185 ~in~Giy~f~~~~l~~~l~~ 204 (501)
T 3st8_A 185 EVNAGVYAFDIAALRSALSR 204 (501)
T ss_dssp EEEEEEEEEEHHHHHHHHTT
T ss_pred eeeceeeeecchhHHHhhhh
Confidence 24899999998877776653
No 11
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*
Probab=97.96 E-value=0.0002 Score=72.15 Aligned_cols=181 Identities=15% Similarity=0.115 Sum_probs=110.8
Q ss_pred ceEEEEEcCCcCCcCCc---cCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 007115 140 NAAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~---~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~ 216 (617)
++.+|+||||.||||+- ..||.++|+. |++++++.++++... + .-.++|.|.....+.+.++
T Consensus 24 ~m~aiIlAaG~g~Rl~~lt~~~pK~ll~i~---g~pli~~~l~~l~~~----g--------~~~iivv~~~~~~~~~~~~ 88 (269)
T 4ecm_A 24 AMKGIILAGGTGSRLYPITKVTNKHLLPVG---RYPMIYHAVYKLKQC----D--------ITDIMIITGKEHMGDVVSF 88 (269)
T ss_dssp CEEEEEECCSCCGGGTTTTSSSCGGGSEET---TEEHHHHHHHHHHHT----T--------CCEEEEEECTTTHHHHHHH
T ss_pred CcEEEEECCCCccccccccCCCCceecEEC---CEEHHHHHHHHHHHC----C--------CCEEEEECChhhHHHHHHH
Confidence 57889999999999986 8899999995 999999999988643 1 1245666665555778888
Q ss_pred HHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCC
Q 007115 217 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (617)
Q Consensus 217 l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN 296 (617)
+.....+|+. +.+..| ..+.|.|+..... ++.+ +-+++.+.+.|.
T Consensus 89 ~~~~~~~~~~---i~~~~~------------------------~~~~G~~~al~~a-----~~~~---~~~~~lv~~~D~ 133 (269)
T 4ecm_A 89 LGSGQEFGVS---FTYRVQ------------------------DKAGGIAQALGLC-----EDFV---GNDRMVVILGDN 133 (269)
T ss_dssp HTTSGGGTCE---EEEEEC------------------------SSCCCHHHHHHTT-----HHHH---TTSEEEEEETTE
T ss_pred HhhccccCce---EEEeeC------------------------CccCcHHHHHHHH-----HHhc---CCCcEEEEeCCc
Confidence 8765555542 211100 0133444333221 2222 147888999999
Q ss_pred ccccccchHHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCC
Q 007115 297 GLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPF 376 (617)
Q Consensus 297 ~L~~~~DP~~lG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f 376 (617)
++. ..--.++..+.+++.++.+-+++.......|.+.. .+|+. +++.|-+ ..+ . .+
T Consensus 134 ~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~v~~---d~g~v----~~~~ekp------~~~----~------~~ 189 (269)
T 4ecm_A 134 IFS-DDIRPYVEEFTNQKEGAKVLLQSVDDPERFGVANI---QNRKI----IEIEEKP------KEP----K------SS 189 (269)
T ss_dssp EES-SCSHHHHHHHHTSSSSEEEEEEECSCGGGSEEEEE---ETTEE----EEEEESC------SSC----S------CS
T ss_pred cCc-cCHHHHHHHHHhcCCCeEEEEEECCCCCCceEEEE---cCCEE----EEEEECC------CCC----C------Cc
Confidence 664 22244677777788888777776444445665543 24542 3333221 111 0 11
Q ss_pred ccceeeeeeehhhhHHHHh
Q 007115 377 PGNINQLILELGPYMEELK 395 (617)
Q Consensus 377 ~gNinn~~~~L~~~~~~l~ 395 (617)
..|++..+|+-+.+ +.++
T Consensus 190 ~~~~Giy~~~~~~l-~~l~ 207 (269)
T 4ecm_A 190 YAVTGIYLYDSKVF-SYIK 207 (269)
T ss_dssp EEEEEEEEECTTHH-HHHT
T ss_pred EEEEEEEEECHHHH-Hhhh
Confidence 34999999997644 4443
No 12
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=97.84 E-value=8.1e-05 Score=74.62 Aligned_cols=185 Identities=16% Similarity=0.084 Sum_probs=111.3
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
|+.+|+||||.||||+ +|.++|+. |++++++.++++... + .-.++|-|. ++.+.+++++
T Consensus 2 ~~~aiIlA~G~stRlp---~K~L~~i~---GkPli~~~l~~l~~~----~--------~~~ivVv~~---~~~i~~~~~~ 60 (252)
T 3oam_A 2 SFTVVIPARYQSTRLP---GKPLADIG---GKPMIQWVYEQAMQA----G--------ADRVIIATD---DERVEQAVQA 60 (252)
T ss_dssp CEEEEEECCCCCSSST---TGGGCEET---TEEHHHHHHHHHHHT----T--------CSEEEEEES---CHHHHHHHHH
T ss_pred ceEEEEecCcCCCCCC---CcceeeEC---CEEHHHHHHHHHHhC----C--------CCeEEEECC---HHHHHHHHHH
Confidence 5789999999999995 79999995 999999999988643 1 113456663 5888999886
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 007115 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (617)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~ 299 (617)
||.. + +... . -.|.|-|.++.++.. +...+-+++.+.+-|++|.
T Consensus 61 ---~g~~---v----------~~~~--------~------~~~~Gt~~~~~~~~~------l~~~~~d~vlv~~gD~Pli 104 (252)
T 3oam_A 61 ---FGGV---V----------CMTS--------P------NHQSGTERLAEVVAK------MAIPADHIVVNVQGDEPLI 104 (252)
T ss_dssp ---TTCE---E----------EECC--------T------TCCSHHHHHHHHHHH------TTCCTTSEEEECCTTCTTC
T ss_pred ---cCCE---E----------EEcC--------C------CCCCcHHHHHHHHHh------cCcCCCCEEEEEeCCeeec
Confidence 3421 1 1110 0 135666776665532 2112568899999999876
Q ss_pred cccc-hHHHHHHhhcCCceeEEeee-CCcccc----cceEEEEecCCCceeEEEEeecCC--C--HH-HhhcCCCCCCCc
Q 007115 300 FKAI-PASLGVSATKQYHVNSLAVP-RKAKEA----IGGITRLTHADGRSMVINVEYNQL--D--PL-LRATGFPDGDVN 368 (617)
Q Consensus 300 ~~~D-P~~lG~~~~~~~d~~~kvv~-r~~~E~----vG~i~~~~~~dG~~~v~nVEYsel--~--~~-l~~~~~~~g~l~ 368 (617)
...+ -.++..+.++++++++-+++ ..|.+- +|.++. +.+|+. +.+++- + +. ...++. ...
T Consensus 105 ~~~~i~~l~~~~~~~~~~~~~~~~~v~~~~~~~~p~~g~vv~--d~~g~v----~~fsr~~i~~~~~~~~~~~~---~~~ 175 (252)
T 3oam_A 105 PPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVIT--DKSGYA----LYFSRATIPWDRDNFAKADK---AIV 175 (252)
T ss_dssp CHHHHHHHHHHHHHSSCSEEEEEEEECCHHHHTCTTSCEEEE--CTTSBE----EEEESSCSSCCHHHHHSSSC---CCC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeeecCCHHHhhCCCceEEEE--CCCCeE----EEEeCCCCCCCCCccccccc---ccc
Confidence 4433 23566666677888877776 334332 244432 456652 344442 1 11 000000 000
Q ss_pred cCCCCCCCccceeeeeeehhhhHHHHh
Q 007115 369 CETGYSPFPGNINQLILELGPYMEELK 395 (617)
Q Consensus 369 ~~~gf~~f~gNinn~~~~L~~~~~~l~ 395 (617)
.+ +-.|+....|+-+.+.+...
T Consensus 176 ----~~-~~~n~GiY~~~~~~l~~~~~ 197 (252)
T 3oam_A 176 ----QP-LLRHIGIYAYRAGFINTYLD 197 (252)
T ss_dssp ----SC-EEEEEEEEEEETTHHHHHHH
T ss_pred ----cc-ceEEEEEEEcCHHHHHHHHc
Confidence 11 23599999999987665553
No 13
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}
Probab=97.82 E-value=0.00014 Score=75.07 Aligned_cols=192 Identities=16% Similarity=0.108 Sum_probs=100.5
Q ss_pred ceEEEEEcCCcCCcCC---c-cCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHH
Q 007115 140 NAAFVLVAGGLGERLG---Y-NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (617)
Q Consensus 140 kvavvlLaGGlGTRLG---~-~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~ 215 (617)
++.+|+||||.||||+ . +.||.++|+. .|++++++.++++... . -.++|.|.....+.+.+
T Consensus 4 ~~~avIlAgG~gtRl~plt~~~~pK~ll~i~--gg~pli~~~l~~l~~~---~----------~~i~vv~~~~~~~~i~~ 68 (308)
T 2qh5_A 4 KIKNILLSGGSGKRLWPLSRSLYPKQFLKLF--DHKSLFELSFKRNASL---V----------DETLIVCNEKHYFLALE 68 (308)
T ss_dssp CEEEEEECC-------------CCGGGCTTB--TTBCHHHHHHHHHHTT---C----------SEEEEEEEGGGHHHHHH
T ss_pred ccEEEEEcCCCCccCCccCCCCCCCEEEECC--CCCCHHHHHHHHHHcc---C----------CCEEEEEChhHHHHHHH
Confidence 4678899999999995 2 5799999993 3999999999988643 1 14577777665567788
Q ss_pred HHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhH-hhhhcChhHHHHHcCceEEEEEeC
Q 007115 216 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHA-LLYSSGLLKEWHDAGLKWVLFFQD 294 (617)
Q Consensus 216 ~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~-aL~~sG~ld~l~~~G~eyi~v~~v 294 (617)
+++++ ||++ ++.+..| + .|.|.|+... ++.. + ..-.++.+.+.
T Consensus 69 ~~~~~--~~~~--~~~~i~~-------------------~-----~~~gt~~al~~a~~~---l-----~~~~~~lv~~~ 112 (308)
T 2qh5_A 69 EIKNE--IKNK--SVGFLLE-------------------S-----LSKNTANAIALSALM---S-----DKEDLLIVTPS 112 (308)
T ss_dssp HTTTT--CSSC--EEEEEEE-------------------S-----SCCCHHHHHHHHHHT---S-----CTTSEEEEEES
T ss_pred HHHHh--hCCC--ccEEEeC-------------------C-----CCCChHHHHHHHHHH---h-----CCCCeEEEEcC
Confidence 88753 4432 2221111 0 1335444433 3211 1 12347889999
Q ss_pred CCcccccc-chHHHHH---HhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccC
Q 007115 295 TNGLLFKA-IPASLGV---SATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCE 370 (617)
Q Consensus 295 DN~L~~~~-DP~~lG~---~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~ 370 (617)
|.++...- --.++.. +.+++.++.+-+.+..+...-|.+.. +.+|+. +++.|.+..-..+ +...
T Consensus 113 D~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~g~i~~--d~~~~V----~~~~Ekp~~~~~~-----~~~~- 180 (308)
T 2qh5_A 113 DHLIKDLQAYENAIKKAIDLAQKGFLVTFGVSIDKPNTEFGYIES--PNGLDV----KRFIEKPSLDKAI-----EFQK- 180 (308)
T ss_dssp SCBCCCHHHHHHHHHHHHHHHHTTCEEEEEEECSSCCTTSEEEEC--SSSSBC----SEEEESCCHHHHH-----HHHH-
T ss_pred CccccCHHHHHHHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEE--CCCCEE----EEEEECCChHHHH-----HHhh-
Confidence 99653211 1223444 44556666665555555555676532 223442 3333333221110 0000
Q ss_pred CCCCCCccceeeeeeehhhhHHHHhh
Q 007115 371 TGYSPFPGNINQLILELGPYMEELKK 396 (617)
Q Consensus 371 ~gf~~f~gNinn~~~~L~~~~~~l~~ 396 (617)
.| .+..|+..++|+-+.+.+.+++
T Consensus 181 ~g--~~~~n~Giy~~~~~~ll~~l~~ 204 (308)
T 2qh5_A 181 SG--GFYFNSGMFVFQAGVFLDELKK 204 (308)
T ss_dssp HC--CEEEEEEEEEEEHHHHHHHHHH
T ss_pred cC--CeEEEeEEEEEEHHHHHHHHHH
Confidence 00 0134999999998776666654
No 14
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...
Probab=97.72 E-value=0.0004 Score=71.34 Aligned_cols=151 Identities=17% Similarity=0.199 Sum_probs=89.4
Q ss_pred ceEEEEEcCCcCCcCC---ccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 007115 140 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (617)
Q Consensus 140 kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~ 216 (617)
++..|+||||.||||+ ...||.++|+. |++++++.++.+... + .-.++|.|+....+.+.++
T Consensus 2 ~~~aIILAgG~gtRl~plT~~~pK~llpi~---gkpli~~~l~~l~~~----g--------i~~I~vv~~~~~~~~i~~~ 66 (293)
T 1fxo_A 2 KRKGIILAGGSGTRLHPATLAISKQLLPVY---DKPMIYYPLSTLMLA----G--------IREILIISTPQDTPRFQQL 66 (293)
T ss_dssp CEEEEEECCCCCTTTTTHHHHSCGGGSEET---TEETTHHHHHHHHHT----T--------CCEEEEEECTTTHHHHHHH
T ss_pred CceEEEECCCCCCcCccccCCCCceeCeEC---CEeHHHHHHHHHHHC----C--------CCEEEEEeccccHHHHHHH
Confidence 3567899999999998 46799999995 999999999888632 1 1134566766667778888
Q ss_pred HHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCC
Q 007115 217 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (617)
Q Consensus 217 l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN 296 (617)
+.+...||++ +.+. . . + .|.|-++.+.... +. +. + +.+.+...||
T Consensus 67 l~~g~~~g~~---i~~~----------------~--~-~-----~~~G~~~al~~a~-----~~-i~-~-~~~~lv~gD~ 111 (293)
T 1fxo_A 67 LGDGSNWGLD---LQYA----------------V--Q-P-----SPDGLAQAFLIGE-----SF-IG-N-DLSALVLGDN 111 (293)
T ss_dssp HTTSGGGTCE---EEEE----------------E--C-S-----SCCCGGGHHHHTH-----HH-HT-T-SEEEEEETTE
T ss_pred HhcccccCce---EEEe----------------e--C-C-----CCCCHHHHHHHHH-----HH-hC-C-CCEEEEECCh
Confidence 8764444532 2111 1 0 0 2556665443221 11 21 2 4455566899
Q ss_pred ccccccchHHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCc
Q 007115 297 GLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGR 342 (617)
Q Consensus 297 ~L~~~~DP~~lG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~ 342 (617)
++....--.++-.+.+.+.+...-+++-...++.|++.. +.+|+
T Consensus 112 ~~~~~~l~~~l~~~~~~~~~~~v~~~~v~dp~~~g~v~~--d~~g~ 155 (293)
T 1fxo_A 112 LYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEF--DQGGK 155 (293)
T ss_dssp EEECTTHHHHHHHHHTCCSSEEEEEEECSCGGGSEEEEE--CTTSC
T ss_pred hccCccHHHHHHHHHhcCCCcEEEEEECCCcccCcEEEE--CCCCc
Confidence 875422234555565555555554444332345675542 34554
No 15
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*
Probab=97.71 E-value=0.00036 Score=75.33 Aligned_cols=216 Identities=14% Similarity=0.141 Sum_probs=107.1
Q ss_pred ceEEEEEcCCcCCcCC---ccCCcccCCcccCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHH
Q 007115 140 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (617)
Q Consensus 140 kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~gk-s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~ 215 (617)
++.+|+||||.||||+ .+.||.++|+. |+ +++++.++++.+. + .-.++|.|.. .++.+.+
T Consensus 20 ~~~avILAaG~gtRl~plT~~~pK~llpi~---g~~pli~~~l~~l~~~----g--------~~~i~vv~~~-~~~~i~~ 83 (451)
T 1yp2_A 20 SVLGIILGGGAGTRLYPLTKKRAKPAVPLG---ANYRLIDIPVSNCLNS----N--------ISKIYVLTQF-NSASLNR 83 (451)
T ss_dssp HEEEEEC------CCTTTTTTSCGGGCEET---TTEETTHHHHHHHHHT----T--------CCEEEEEESC-CCHHHHH
T ss_pred ceEEEEECCCCCCcccchhcCCcceeeEEC---CcceeHHHHHHHHHHC----C--------CCEEEEEecc-CHHHHHH
Confidence 4788999999999998 67899999995 88 9999999888643 1 1235666654 4567888
Q ss_pred HHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCC
Q 007115 216 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDT 295 (617)
Q Consensus 216 ~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vD 295 (617)
++.+....++. .++.++.+..+... ..+ .-...+-|.|+-.... ++.+...+-+++.+.+.|
T Consensus 84 ~~~~~~~~~~~----~~~~~~~v~i~~~~--------~~~-~~~~~~~Gt~~al~~a-----~~~~~~~~~~~~lv~~~D 145 (451)
T 1yp2_A 84 HLSRAYASNMG----GYKNEGFVEVLAAQ--------QSP-ENPDWFQGTADAVRQY-----LWLFEEHTVLEYLILAGD 145 (451)
T ss_dssp HHHHHCC------------CCEEEEEESC--------SST-TSCCCCCSHHHHHHHT-----HHHHTTSCCSEEEEECSC
T ss_pred HHhhhhhcccc----cccccCcEEEeccc--------ccc-cccccccCcHHHHHHH-----HHHHHhcCCCeEEEecCc
Confidence 88753100111 01122222222110 000 0001234554433221 222322346889999999
Q ss_pred CccccccchHHHHHHhhcCCceeEEeeeCC--cccccceEEEEecCCCceeEEEEeecCCCHHHh--hcCCCCCCCccCC
Q 007115 296 NGLLFKAIPASLGVSATKQYHVNSLAVPRK--AKEAIGGITRLTHADGRSMVINVEYNQLDPLLR--ATGFPDGDVNCET 371 (617)
Q Consensus 296 N~L~~~~DP~~lG~~~~~~~d~~~kvv~r~--~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~--~~~~~~g~l~~~~ 371 (617)
. +....--.++.++.++++++.+-+.+.. +...-|.+.. +.+|+ + +++.|.+..-. ....+..-+.+..
T Consensus 146 ~-~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~--d~~~~--v--~~~~ekp~~~~~~~~~~~~~~l~~~~ 218 (451)
T 1yp2_A 146 H-LYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKI--DEEGR--I--IEFAEKPQGEQLQAMKVDTTILGLDD 218 (451)
T ss_dssp E-ECCCCHHHHHHHHHHTTCSEEEEEEEECHHHHTTSEEEEE--CTTSB--E--EEEEESCCHHHHHHTCCCGGGGSCCH
T ss_pred E-EEcCCHHHHHHHHHHcCCcEEEEEEEcChhhcccCCEEEE--CCCCC--E--EEEEECCCchhhcccccccccccccc
Confidence 9 4332223567777777888766544422 3345565432 33454 2 44544433211 0000000000000
Q ss_pred ---CCCCCccceeeeeeehhhhHHHHhh
Q 007115 372 ---GYSPFPGNINQLILELGPYMEELKK 396 (617)
Q Consensus 372 ---gf~~f~gNinn~~~~L~~~~~~l~~ 396 (617)
.-..+..|+..++|+-+.+.+.+++
T Consensus 219 ~~~~~~~~~~~~Giy~~~~~~l~~~l~~ 246 (451)
T 1yp2_A 219 KRAKEMPFIASMGIYVISKDVMLNLLRD 246 (451)
T ss_dssp HHHHHCCEEEEEEEEEEEHHHHHHHHHT
T ss_pred ccccCCcceEEeeEEEEcHHHHHHHHHh
Confidence 0011234899999998766666654
No 16
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}
Probab=97.69 E-value=0.00061 Score=72.99 Aligned_cols=206 Identities=12% Similarity=0.088 Sum_probs=112.0
Q ss_pred hcceEEEEEcCCcCCcCC---ccCCcccCCcccCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHH
Q 007115 138 AKNAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRT 213 (617)
Q Consensus 138 l~kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~gk-s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T 213 (617)
..++.+|+||||.||||+ .+.||.++|+. |+ +++++.++++... + .-.++|.|.. .++.+
T Consensus 10 m~~~~avILAaG~gtRl~plT~~~pK~llpi~---gk~pli~~~l~~l~~~----g--------i~~i~vv~~~-~~~~i 73 (420)
T 3brk_X 10 ARDAMAYVLAGGRGSRLKELTDRRAKPAVYFG---GKARIIDFALSNALNS----G--------IRRIGVATQY-KAHSL 73 (420)
T ss_dssp GGGEEEEEEECCCCGGGGGGGSSSCGGGSEET---TTEETHHHHHHHHHHT----T--------CCEEEEEECT-TCHHH
T ss_pred hhceEEEEEcCCCCCccchhhcCCcccccccC---CCCcHHHHHHHHHHhC----C--------CCeEEEEeCC-ChHHH
Confidence 346788999999999998 67899999995 99 9999999988643 1 1135666654 46788
Q ss_pred HHHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEe
Q 007115 214 QELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQ 293 (617)
Q Consensus 214 ~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~ 293 (617)
.+++++. ||+... +.+..++.+.. .. ... ...| +-|-++.... .++.+...+-+++.+.+
T Consensus 74 ~~~~~~~--~~~~~~----~~~~~v~i~~~-~~------~~~-~~~~-~~Gt~~al~~-----a~~~l~~~~~~~~lv~~ 133 (420)
T 3brk_X 74 IRHLQRG--WDFFRP----ERNESFDILPA-SQ------RVS-ETQW-YEGTADAVYQ-----NIDIIEPYAPEYMVILA 133 (420)
T ss_dssp HHHHHHH--SCCCCG----GGTCEEEEECC-C--------------C-CCCHHHHHHT-----THHHHHHHCCSEEEEEE
T ss_pred HHHHhhh--hccccc----cccCCEEEeCc-cc------ccc-CCcc-ccCCHHHHHH-----HHHHHHhcCCCEEEEec
Confidence 8888874 444210 00111221110 00 000 0001 1344333221 13334333567888999
Q ss_pred CCCccccccchHHHHHHhhcCCceeEEeeeC--CcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCC
Q 007115 294 DTNGLLFKAIPASLGVSATKQYHVNSLAVPR--KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCET 371 (617)
Q Consensus 294 vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r--~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~ 371 (617)
.|. +....--.++..+.++++++.+-+.+. ......|.+.. +.+|+. +++.|.+......+ + ..
T Consensus 134 ~D~-~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~--d~~g~v----~~~~ekp~~~~~~~----~---~~ 199 (420)
T 3brk_X 134 GDH-IYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHV--NEKDEI----IDFIEKPADPPGIP----G---NE 199 (420)
T ss_dssp SSC-EECBCTHHHHHHHHHTTCSEEEEEEEEETTGGGGSEEEEE--CTTSBE----EEEEESCSSCCCBT----T---BT
T ss_pred ccE-EEchHHHHHHHHHHHcCCeEEEEEeecCccccCcccEEEE--CCCCcE----EEeEeCCCcccccc----c---cc
Confidence 999 432222346777777788776655542 23334565532 334543 33333221100000 0 00
Q ss_pred CCCCCccceeeeeeehhhhHHHHh
Q 007115 372 GYSPFPGNINQLILELGPYMEELK 395 (617)
Q Consensus 372 gf~~f~gNinn~~~~L~~~~~~l~ 395 (617)
+ .+..|+..++|+-+.+.+.++
T Consensus 200 ~--~~~~~~Giy~~~~~~l~~~l~ 221 (420)
T 3brk_X 200 G--FALASMGIYVFHTKFLMEAVR 221 (420)
T ss_dssp T--EEEEEEEEEEEEHHHHHHHHT
T ss_pred c--ceEEeeeeEEEeHHHHHHHHH
Confidence 0 123599999999876666654
No 17
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*
Probab=97.58 E-value=0.00037 Score=68.64 Aligned_cols=126 Identities=16% Similarity=0.109 Sum_probs=80.3
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
++.+|+||||.||||| ||.++|+. |++++++.++++... + ..-.++|.|+. +.+.+++++
T Consensus 2 ~~~aiIlA~G~~~R~~---~K~l~~i~---g~pli~~~i~~~~~~----~-------~~~~ivvv~~~---~~i~~~~~~ 61 (245)
T 1h7e_A 2 KAVIVIPARYGSSRLP---GKPLLDIV---GKPMIQHVYERALQV----A-------GVAEVWVATDD---PRVEQAVQA 61 (245)
T ss_dssp CEEEEEECCSCCSSST---TGGGCEET---TEEHHHHHHHHHHTC----T-------TCCEEEEEESC---HHHHHHHHH
T ss_pred CeEEEEEcCCcCCCCC---CCcccccC---CchHHHHHHHHHHhC----C-------CCCeEEEECCc---HHHHHHHHH
Confidence 4678999999999997 99999995 999999998888633 1 01246666753 678888876
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 007115 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (617)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~ 299 (617)
+ |. .++... + ..+.|.++++.++.. + +-+++.+.+.|.++.
T Consensus 62 ~---~~-------------~~~~~~--------~------~~~~g~~~~~~~~~~------~---~~~~~lv~~~D~P~~ 102 (245)
T 1h7e_A 62 F---GG-------------KAIMTR--------N------DHESGTDRLVEVMHK------V---EADIYINLQGDEPMI 102 (245)
T ss_dssp T---TC-------------EEEECC--------S------CCSSHHHHHHHHHHH------S---CCSEEEECCTTCTTC
T ss_pred c---CC-------------eEEeCC--------C------ccCCcHHHHHHHHHh------C---CCCEEEEEcCCcCcC
Confidence 3 21 112110 0 123445556655432 1 457899999999875
Q ss_pred cccc-hHHHHHHhhc-CCceeEEeeeC
Q 007115 300 FKAI-PASLGVSATK-QYHVNSLAVPR 324 (617)
Q Consensus 300 ~~~D-P~~lG~~~~~-~~d~~~kvv~r 324 (617)
...+ -.++..+... +++++.-+++.
T Consensus 103 ~~~~i~~l~~~~~~~~~~~~~~~~~~~ 129 (245)
T 1h7e_A 103 RPRDVETLLQGMRDDPALPVATLCHAI 129 (245)
T ss_dssp CHHHHHHHHHHHHHCTTCCEEEEEEEE
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEeecC
Confidence 4322 2345555555 67776655554
No 18
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6
Probab=97.55 E-value=0.0015 Score=67.28 Aligned_cols=70 Identities=21% Similarity=0.244 Sum_probs=52.7
Q ss_pred eEEEEEcCCcCCcCC---ccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 007115 141 AAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (617)
Q Consensus 141 vavvlLaGGlGTRLG---~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l 217 (617)
+.+|+||||.||||+ ...||.++|+. |++++++.++.+... + .-.++|.|+....+...+++
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~llpi~---gkpli~~~l~~l~~~----g--------i~~Iivv~~~~~~~~i~~~l 68 (295)
T 1lvw_A 4 MKGIVLAGGSGTRLYPITRAVSKQLLPIY---DKPMIYYPLSVLMLA----G--------IRDILIISTPRDLPLYRDLL 68 (295)
T ss_dssp CEEEEECCCCCSTTTTTTTSSCGGGSEET---TEETTHHHHHHHHHT----T--------CCEEEEEECTTTHHHHHHHH
T ss_pred eEEEEECCCCCCccccccCCCCceecEEC---CeeHHHHHHHHHHHC----C--------CCeEEEEeccchHHHHHHHh
Confidence 567899999999998 57899999995 999999999888632 1 11356667666667788888
Q ss_pred HhCCCCCC
Q 007115 218 ESNSYFGM 225 (617)
Q Consensus 218 ~~~~~FGl 225 (617)
.....+|+
T Consensus 69 ~~g~~~g~ 76 (295)
T 1lvw_A 69 GDGSQFGV 76 (295)
T ss_dssp TTSGGGTS
T ss_pred hhccccCc
Confidence 76444454
No 19
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=97.54 E-value=0.00059 Score=69.27 Aligned_cols=186 Identities=16% Similarity=0.115 Sum_probs=109.7
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
++.+|+||||.||||+ .|.++|+. |++++++.++++... + .-.++|-|. ++.+.+++++
T Consensus 18 ~~~aIIlA~G~stRlp---~K~L~~i~---GkPmi~~~l~~l~~~----~--------i~~IvV~t~---~~~i~~~~~~ 76 (264)
T 3k8d_A 18 SFVVIIPARYASTRLP---GKPLVDIN---GKPMIVHVLERARES----G--------AERIIVATD---HEDVARAVEA 76 (264)
T ss_dssp CCEEEEECCSCCSSST---TGGGCEET---TEEHHHHHHHHHHHT----T--------CSEEEEEES---CHHHHHHHHH
T ss_pred ceEEEEEcCCCCCCCC---CcceeeEC---CeEHHHHHHHHHHhC----C--------CCEEEEECC---HHHHHHHHHH
Confidence 5889999999999995 59999995 999999999988643 1 113466663 5778888875
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 007115 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (617)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~ 299 (617)
||.. + +... . ..|.|-|.+..++.. +...+.+++.+.+-|+++.
T Consensus 77 ---~g~~---v----------~~~~--------~------~~~~Gt~~i~~~~~~------l~~~~~d~vlv~~gD~Pli 120 (264)
T 3k8d_A 77 ---AGGE---V----------CMTR--------A------DHQSGTERLAEVVEK------CAFSDDTVIVNVQGDEPMI 120 (264)
T ss_dssp ---TTCE---E----------EECC--------T------TCCSHHHHHHHHHHH------HTCCTTCEEEEECTTCTTC
T ss_pred ---cCCE---E----------EEec--------C------CCCCCHHHHHHHHHH------hccCCCCEEEEEcCCcccC
Confidence 3321 1 1110 0 134566666655432 2223568999999999886
Q ss_pred cccc-hHHHHHHhhcCCceeEEeee-CCccc-----ccceEEEEecCCCceeEEEEeecCCCH-HHhhc-CCCCCCCccC
Q 007115 300 FKAI-PASLGVSATKQYHVNSLAVP-RKAKE-----AIGGITRLTHADGRSMVINVEYNQLDP-LLRAT-GFPDGDVNCE 370 (617)
Q Consensus 300 ~~~D-P~~lG~~~~~~~d~~~kvv~-r~~~E-----~vG~i~~~~~~dG~~~v~nVEYsel~~-~l~~~-~~~~g~l~~~ 370 (617)
...+ -.++..+...+++++.-+++ +.+.+ .++++ .+.+|+. +.+++-+. .-+.. ........
T Consensus 121 ~~~~i~~li~~~~~~~~~~~~~~~~v~d~~~~~~p~~vkVv---~d~~g~~----l~fsr~~ip~~r~~~~~~~~~~~-- 191 (264)
T 3k8d_A 121 PATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVV---LDAEGYA----LYFSRATIPWDRDRFAEGLETVG-- 191 (264)
T ss_dssp CHHHHHHHHHHHHTSSCSEEEEEEECCSHHHHTCTTSCEEE---ECTTSBE----EEEESSCCSCCHHHHHHCSSCCC--
T ss_pred CHHHHHHHHHHHhhcCCCEEEEEEEcCCHHHccCCCceEEE---ECCCCeE----EEEecCCCCCCCccccccccccC--
Confidence 4332 23455556678888888887 43332 22332 2556763 45555321 00000 00000000
Q ss_pred CCCCCCccceeeeeeehhhhHHHH
Q 007115 371 TGYSPFPGNINQLILELGPYMEEL 394 (617)
Q Consensus 371 ~gf~~f~gNinn~~~~L~~~~~~l 394 (617)
.+ |-.|+....|+-+.+.+..
T Consensus 192 --~~-~~~~~GiY~y~~~~l~~~~ 212 (264)
T 3k8d_A 192 --DN-FLRHLGIYGYRAGFIRRYV 212 (264)
T ss_dssp --SC-CEEECSEEEEEHHHHHHHH
T ss_pred --Cc-ceEEEEEEEECHHHHHHHH
Confidence 11 2359999999987665544
No 20
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}
Probab=97.53 E-value=0.00052 Score=66.95 Aligned_cols=119 Identities=16% Similarity=0.174 Sum_probs=74.9
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
++.+|+||||.||||| ||.++|+. |++++++.++++... .. .++|.|.. +.+.+++++
T Consensus 2 ~~~aiIlA~G~g~R~~---~K~l~~i~---g~pli~~~l~~~~~~---~~----------~i~v~~~~---~~i~~~~~~ 59 (234)
T 2y6p_A 2 RRAVIIPARLGSTRLK---EKPLKNLL---GKPLIRWVVEGLVKT---GE----------RVILATDS---ERVKEVVED 59 (234)
T ss_dssp CEEEEEECCSCCTTTT---TGGGCEET---TEEHHHHHHHHHHTT---TS----------CEEEEESC---HHHHHHHTT
T ss_pred ceEEEEEcCCCCCCCC---CCcceeEC---CEEHHHHHHHHHHHh---CC----------EEEEECCh---HHHHHHHHh
Confidence 4678999999999998 99999995 999999999988643 11 35666653 566777653
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 007115 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (617)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~ 299 (617)
+ . .+ +... + ..+.|.|+++.++.. -+-+++.+.+.|.++.
T Consensus 60 ~----~---~~----------~~~~--------~------~~~~g~~~~~~~~~~---------~~~~~vlv~~~D~P~~ 99 (234)
T 2y6p_A 60 L----C---EV----------FLTP--------S------DLPSGSDRVLYVVRD---------LDVDLIINYQGDEPFV 99 (234)
T ss_dssp T----S---EE----------EECC--------T------TCCSHHHHHHHHHTT---------CCCSEEEECCTTCCCC
T ss_pred c----e---EE----------EECC--------c------ccccchHHHHHHHHh---------CCCCEEEEecCCcCcC
Confidence 1 0 11 1100 0 124556666654432 1457899999999876
Q ss_pred cccc-hHHHHHHhhcCCceeEEe
Q 007115 300 FKAI-PASLGVSATKQYHVNSLA 321 (617)
Q Consensus 300 ~~~D-P~~lG~~~~~~~d~~~kv 321 (617)
...+ -.++..+.+.+ +...-+
T Consensus 100 ~~~~i~~l~~~~~~~~-~~~~~~ 121 (234)
T 2y6p_A 100 YEEDIKLIFRELEKGE-RVVTLA 121 (234)
T ss_dssp CHHHHHHHHHHHHHTC-SEEEEE
T ss_pred CHHHHHHHHHHHHhCC-CeEEEe
Confidence 4322 23455555555 443333
No 21
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6
Probab=97.46 E-value=0.0012 Score=67.96 Aligned_cols=143 Identities=18% Similarity=0.203 Sum_probs=85.2
Q ss_pred eEEEEEcCCcCCcCC---ccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 007115 141 AAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (617)
Q Consensus 141 vavvlLaGGlGTRLG---~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l 217 (617)
+..|+||||.||||+ ...||.++|+. |++++++.++.+... + .-.++|.|+....+.+.+++
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~llpi~---gkpli~~~l~~l~~~----g--------i~~I~vv~~~~~~~~i~~~l 68 (296)
T 1mc3_A 4 MKGIILAGGSGTRLHPITRGVSKQLLPIY---DKPMIYYPLSVLMLA----G--------IREILIITTPEDKGYFQRLL 68 (296)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGGGSEET---TEETTHHHHHHHHHT----T--------CCEEEEEECTTTHHHHHHHH
T ss_pred cEEEEECCCCCCcCCcccCCCCceeeEEC---CeeHHHHHHHHHHhC----C--------CCcEEEEechhHHHHHHHHH
Confidence 567899999999998 57899999995 999999999888632 2 11356667666677788888
Q ss_pred HhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhh-HhhhhcChhHHHHHcCceEEEEEeCCC
Q 007115 218 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVH-ALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (617)
Q Consensus 218 ~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~-~aL~~sG~ld~l~~~G~eyi~v~~vDN 296 (617)
.....||+. +.+..| + .|.|-++.+ .++. ++. +-.++ +...||
T Consensus 69 ~~g~~~g~~---i~~~~~-------------------~-----~~~G~~~al~~a~~-------~i~-~~~~~-lv~gD~ 112 (296)
T 1mc3_A 69 GDGSEFGIQ---LEYAEQ-------------------P-----SPDGLAQAFIIGET-------FLN-GEPSC-LVLGDN 112 (296)
T ss_dssp TTSGGGTCE---EEEEEC-------------------S-----SCCCSTHHHHHTHH-------HHT-TSCEE-EEETTE
T ss_pred hcccccCce---EEEecc-------------------C-----CCCCHHHHHHHHHH-------HhC-CCCEE-EEECCc
Confidence 764445542 211111 0 245555433 3321 121 22344 444899
Q ss_pred ccccccchHHHHHHhhcCCceeEEeeeCCcccccceEE
Q 007115 297 GLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGIT 334 (617)
Q Consensus 297 ~L~~~~DP~~lG~~~~~~~d~~~kvv~r~~~E~vG~i~ 334 (617)
++....-..++-.+.+.+.+...-+++-...+..|++.
T Consensus 113 ~~~~~~l~~~l~~~~~~~~~~~v~~~~v~dp~~yg~v~ 150 (296)
T 1mc3_A 113 IFFGQGFSPKLRHVAARTEGATVFGYQVMDPERFGVVE 150 (296)
T ss_dssp EEECSSCHHHHHHHTTCCSSEEEEEEECSCCSSSBBCE
T ss_pred cccccCHHHHHHHHHHcCCCCEEEEEECCCcccCCEEE
Confidence 87543224456666555555554444432234567654
No 22
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=97.43 E-value=0.00077 Score=68.12 Aligned_cols=188 Identities=14% Similarity=0.078 Sum_probs=103.6
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
++.+|+||||.||||+ ||.++|+. ||+++++.++++... + --.++|-|. ++.+.+++++
T Consensus 9 ~~~aIIlA~G~stRl~---~K~L~~i~---GkPli~~~l~~l~~~----~--------i~~VvVvt~---~~~i~~~~~~ 67 (256)
T 3tqd_A 9 EFRVIIPARFDSTRLP---GKALVDIA---GKPMIQHVYESAIKS----G--------AEEVVIATD---DKRIRQVAED 67 (256)
T ss_dssp CCEEEEECCCC---CT---TGGGCEET---TEEHHHHHHHHHHHT----T--------CSEEEEEES---CHHHHHHHHH
T ss_pred CceEEEEcCCCCCCCC---CCCeeeEC---CchHHHHHHHHHHhC----C--------CCEEEEECC---HHHHHHHHHH
Confidence 6889999999999997 89999995 999999999988643 1 113455563 5788888875
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 007115 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (617)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~ 299 (617)
||.. + +... . -.|.|-+.++.++.. +...+.+++.+.+-|+++.
T Consensus 68 ---~g~~---v----------~~~~--------~------~~~~Gt~~i~~a~~~------l~~~~~d~vlv~~gD~Pli 111 (256)
T 3tqd_A 68 ---FGAV---V----------CMTS--------S------DHQSGTERIAEAAVA------LGFEDDEIIVCLQGDEPLI 111 (256)
T ss_dssp ---TTCE---E----------EECC--------T------TCCSHHHHHHHHHHH------TTCCTTCEEEEECTTCCCC
T ss_pred ---cCCe---E----------EEeC--------C------CCCCcHHHHHHHHHH------hCcCCCCEEEEEeCCcccC
Confidence 3431 1 1110 0 134566666666532 2113578999999999886
Q ss_pred cccch-HHHHHHhhc-CCceeEEeee-CCccc-----ccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCcc-C
Q 007115 300 FKAIP-ASLGVSATK-QYHVNSLAVP-RKAKE-----AIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNC-E 370 (617)
Q Consensus 300 ~~~DP-~~lG~~~~~-~~d~~~kvv~-r~~~E-----~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~-~ 370 (617)
...+. .++..+.++ +++++.-+++ +.+.+ .+++++ +.+|+. +.+++-+.- ..++....-.. .
T Consensus 112 ~~~~i~~li~~~~~~~~~~~a~l~~~v~~~~~~~~p~~vkvv~---d~~g~~----l~fsr~pip--~~r~~~~~~~~~~ 182 (256)
T 3tqd_A 112 PPDAIRKLAEDLDEHDNVKVASLCTPITEVDELFNPHSTKVVL---NRRNYA----LYFSHAPIP--WGRDTFSDKENLQ 182 (256)
T ss_dssp CHHHHHHHHHHHHHCC--CEEEEEEECCCHHHHTCTTSCEEEE---CTTSBE----EEEESSCSS--CCTTTTTCGGGCC
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEeeEcCCHHHhhCCCccEEEE---CCCCEE----eEEecCCCC--CCCcccccccccc
Confidence 43222 234555443 5677777776 33221 234432 556763 344443110 00000000000 0
Q ss_pred CCCCCCccceeeeeeehhhhHHHH
Q 007115 371 TGYSPFPGNINQLILELGPYMEEL 394 (617)
Q Consensus 371 ~gf~~f~gNinn~~~~L~~~~~~l 394 (617)
...+ +..|+....|+-+.+.+..
T Consensus 183 ~~~~-~~~~~GiY~y~~~~l~~~~ 205 (256)
T 3tqd_A 183 LNGS-HYRHVGIYAYRVGFLEEYL 205 (256)
T ss_dssp CSSC-CEEEEEEEEEEHHHHHHHH
T ss_pred cCCc-ceEEEEEEEcCHHHHHHHH
Confidence 0112 2369999999987655443
No 23
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Probab=97.42 E-value=0.0023 Score=68.72 Aligned_cols=180 Identities=16% Similarity=0.119 Sum_probs=102.2
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
++.+|+||||.|||||-+.||.++|+. |++++++.++++.... .-.++|.|+.. ++.+.+++++
T Consensus 8 ~~~aiIlA~G~g~Rl~~~~pK~l~~i~---g~pli~~~l~~l~~~~------------~~~i~vv~~~~-~~~i~~~~~~ 71 (459)
T 4fce_A 8 SMSVVILAAGKGTRMYSDLPKVLHPLA---GKPMVQHVIDAAMKLG------------AQHVHLVYGHG-GELLKKTLAD 71 (459)
T ss_dssp CEEEEEEECCCCGGGCCSSCGGGSEET---TEEHHHHHHHHHHHHT------------CSCEEEEESSC-HHHHHHHC--
T ss_pred cceEEEECCCCCccCCCCCCcccCeeC---CeeHHHHHHHHHHhCC------------CCcEEEEeCCC-HHHHHHHhcc
Confidence 688999999999999988999999995 9999999999887541 12466777655 6677777664
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCC-chhhHhhhhcChhHHHHHcCceEEEEEeCCCcc
Q 007115 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGH-GDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (617)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~Gh-Gdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L 298 (617)
.+ +.+ +. . + .+.|. +.++.++..- .+-+++.+.+.|.++
T Consensus 72 ~~--------~~~----------------v~--~-~-----~~~g~~~~i~~~~~~~--------~~~~~~lv~~~D~P~ 111 (459)
T 4fce_A 72 PS--------LNW----------------VL--Q-A-----EQLGTGHAMQQAAPHF--------ADDEDILMLYGDVPL 111 (459)
T ss_dssp -----------CE----------------EE--C-S-----SCCCHHHHHHHHGGGS--------CTTSEEEEEETTCTT
T ss_pred CC--------cEE----------------Ee--C-C-----CCCCcHHHHHHHHHhc--------CCCCcEEEEeCCccc
Confidence 21 111 11 0 0 01232 2355554321 135799999999987
Q ss_pred ccccchH-HHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCc
Q 007115 299 LFKAIPA-SLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFP 377 (617)
Q Consensus 299 ~~~~DP~-~lG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~ 377 (617)
....+.. ++-.+. +.+.+.-+++.......|.+.. .+|+. .++.|-+.. .+ +.. .+ +.
T Consensus 112 i~~~~i~~l~~~~~--~~~~~~~~~~~~~~~~~g~v~~---~~g~v----~~~~ek~~~-----~~--~~~----~~-~~ 170 (459)
T 4fce_A 112 ISVDTLQRLLAAKP--EGGIGLLTVKLDNPSGYGRIVR---ENGDV----VGIVEHKDA-----SD--AQR----EI-NE 170 (459)
T ss_dssp CCHHHHHHHHHHCC--TTSEEEEEEECSCCTTSCEEEE---ETTEE----EEEECGGGC-----CT--TGG----GC-CE
T ss_pred CCHHHHHHHHHHHh--hCCEEEEEEecCCCCcccEEEe---CCCcE----EEEEECCCC-----Ch--HHh----hc-cE
Confidence 5432211 222222 3455555555433344565442 25543 233322111 00 000 11 13
Q ss_pred cceeeeeeehhhhHHHHhh
Q 007115 378 GNINQLILELGPYMEELKK 396 (617)
Q Consensus 378 gNinn~~~~L~~~~~~l~~ 396 (617)
.|+..++|+-+.+.+.++.
T Consensus 171 ~~~Giy~~~~~~l~~~l~~ 189 (459)
T 4fce_A 171 INTGILVANGRDLKRWLSL 189 (459)
T ss_dssp EEEEEEEEEHHHHHHHHHT
T ss_pred EEEEEEEEEHHHHHHHHHH
Confidence 4888999998777666653
No 24
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}
Probab=97.37 E-value=0.0036 Score=64.34 Aligned_cols=148 Identities=13% Similarity=0.051 Sum_probs=87.2
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
++.+|+||||.||||+. ||.++|+.. .|++++++.++.+... + .-.++|.|.....+.+.++|..
T Consensus 5 ~~~~vIlAaG~g~R~~~--~K~l~~ig~-~g~pli~~~l~~~~~~----~--------~~~i~vv~~~~~~~~~~~~~~~ 69 (303)
T 3pnn_A 5 KPTLFVLAAGMGSRYGS--LKQLDGIGP-GGDTIMDYSVYDAIRA----G--------FGRLVFVIRHSFEKEFREKILT 69 (303)
T ss_dssp CCEEEEECTTCBCTTSS--BCCCCCCST-TSCCHHHHHHHHHHHH----T--------CCEEEEEECGGGHHHHHHHTHH
T ss_pred ceEEEEECCCCcccCCC--CceEeEcCC-CCeeHHHHHHHHHHHC----C--------CCeEEEEcCchHHHHHHHHHHH
Confidence 46789999999999985 899999931 3899999999988643 2 2246677776556888888876
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 007115 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (617)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~ 299 (617)
...++ .+|.+..|+..- + .....+.. . ...|-|.|+....... .++ +.+.|.+-|++..
T Consensus 70 ~~~~~---~~i~~~~~~~~~-~-~~~~~~~~--~-----~~~~~Gt~~al~~a~~--~i~-------~~~lV~~gD~l~~ 128 (303)
T 3pnn_A 70 KYEGR---IPVELVFQELDR-L-PEGFSCPE--G-----REKPWGTNHAVLMGRD--AIR-------EPFAVINADDFYG 128 (303)
T ss_dssp HHTTT---SCEEEEECCTTC-C-CTTCCCCT--T-----CCSCCCHHHHHHTTTT--TCC-------SCEEEEESSCBCC
T ss_pred HhccC---CcEEEEeccccc-c-cccccccc--c-----ccccCCcHHHHHHHHH--hcC-------CCEEEEECCeecC
Confidence 43333 246666666321 1 11122221 1 1235676654443322 221 3345667788432
Q ss_pred cccchHHHHHHhh---cCCceeEEeee
Q 007115 300 FKAIPASLGVSAT---KQYHVNSLAVP 323 (617)
Q Consensus 300 ~~~DP~~lG~~~~---~~~d~~~kvv~ 323 (617)
...--.++-++.+ .+.++++-+.+
T Consensus 129 ~~~~~~l~~~~~~~~~~~~~~~v~~~~ 155 (303)
T 3pnn_A 129 RNGFEVLARKLMTLEGKQGEYCMVGYR 155 (303)
T ss_dssp HHHHHHHHHHHHTTTTCSSEEEEEEEE
T ss_pred HHHHHHHHHHHHHhccccCceEEEEEE
Confidence 1111235666654 56777766655
No 25
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*
Probab=97.36 E-value=0.0016 Score=70.26 Aligned_cols=180 Identities=14% Similarity=0.129 Sum_probs=103.1
Q ss_pred EEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCC
Q 007115 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNS 221 (617)
Q Consensus 142 avvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~~ 221 (617)
-+|+||||.||||+.+.||.++|+. |++++++.++++... + .-.++|.|+.. .+.+.+++.+
T Consensus 13 ~~vIlAaG~g~R~~~~~pK~l~~i~---gkpli~~~l~~l~~~----g--------~~~iivv~~~~-~~~i~~~~~~-- 74 (468)
T 1hm9_A 13 FAIILAAGKGTRMKSDLPKVLHKVA---GISMLEHVFRSVGAI----Q--------PEKTVTVVGHK-AELVEEVLAG-- 74 (468)
T ss_dssp EEEEECCCCCGGGCCSSCGGGSEET---TEEHHHHHHHHHHTT----C--------CSEEEEEECTT-HHHHHHSSSS--
T ss_pred cEEEEcCCCCccCCCCCCcEeeEEC---CccHHHHHHHHHHhc----C--------CCCEEEEECCC-HHHHHHHhCC--
Confidence 4688999999999988899999995 999999999887643 1 12456666543 4444444332
Q ss_pred CCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCch-hhHhhhhcChhHHHHHcCceEEEEEeCCCcccc
Q 007115 222 YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD-VHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLF 300 (617)
Q Consensus 222 ~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGd-i~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~~ 300 (617)
.+.+ + . +. .+.|-++ ++.++ +.+ ...-+++.+.+.|.++..
T Consensus 75 -------~i~~--------v--------~--~~------~~~G~~~sl~~a~------~~~-~~~~~~vlv~~~D~P~i~ 116 (468)
T 1hm9_A 75 -------QTEF--------V--------T--QS------EQLGTGHAVMMTE------PIL-EGLSGHTLVIAGDTPLIT 116 (468)
T ss_dssp -------SSEE--------E--------E--CS------SCCCHHHHHHTTH------HHH-TTCCSEEEEEETTCTTCC
T ss_pred -------CcEE--------E--------e--CC------ccCChHHHHHHHH------HHh-ccCCCeEEEEeCCccccC
Confidence 1111 1 1 00 1233333 33333 222 222478999999998754
Q ss_pred ccc-hHHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCccc
Q 007115 301 KAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGN 379 (617)
Q Consensus 301 ~~D-P~~lG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gN 379 (617)
..+ -.++-.+.+.++++.+-+.+.......|.+.. +.+|+. +++.|-+.. .+ ... ..+..|
T Consensus 117 ~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~g~v~~--d~~g~v----~~~~ek~~~-----~~--~~~-----~~~~~~ 178 (468)
T 1hm9_A 117 GESLKNLIDFHINHKNVATILTAETDNPFGYGRIVR--NDNAEV----LRIVEQKDA-----TD--FEK-----QIKEIN 178 (468)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEE--CTTCCE----EEEECTTTC-----CT--TGG-----GCCEEE
T ss_pred HHHHHHHHHHHHhcCCcEEEEEeccCCCCceeEEEE--CCCCCE----EEEEECCCC-----Ch--HHh-----cCeEEE
Confidence 433 23556666777887776666543344565432 334542 344332210 00 000 012348
Q ss_pred eeeeeeehhhhHHHHh
Q 007115 380 INQLILELGPYMEELK 395 (617)
Q Consensus 380 inn~~~~L~~~~~~l~ 395 (617)
+...+|+-+.+.+.++
T Consensus 179 ~Giy~f~~~~l~~~l~ 194 (468)
T 1hm9_A 179 TGTYVFDNERLFEALK 194 (468)
T ss_dssp EEEEEEEHHHHHHHHT
T ss_pred EEEEEEEHHHHHHHHH
Confidence 8888999876666654
No 26
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Probab=97.31 E-value=0.0032 Score=67.52 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=49.1
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
++.+|+||||.||||+.+.||.++|+. |++++++.++++... + .-.++|.|+.. .+.+.+++.+
T Consensus 5 ~~~aiIlA~G~g~Rl~~~~pK~l~~i~---gkpli~~~l~~l~~~----~--------~~~iivv~~~~-~~~i~~~~~~ 68 (456)
T 2v0h_A 5 ALSAVILAAGKGTRMYSDLPKVLHTIA---GKPMVKHVIDTAHQL----G--------SENIHLIYGHG-GDLMRTHLAN 68 (456)
T ss_dssp CEEEEEECCCCCGGGCSSSCGGGSEET---TEEHHHHHHHHHHHT----T--------CSCEEEEECTT-HHHHHHHTTT
T ss_pred cceEEEECCCCCcccCCCCCccccEEC---CccHHHHHHHHHHhC----C--------CCcEEEEeCCC-HHHHHHHhhc
Confidence 578899999999999977899999995 999999999988653 1 11356666653 4666666654
No 27
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A
Probab=97.21 E-value=0.00028 Score=66.84 Aligned_cols=61 Identities=20% Similarity=0.183 Sum_probs=45.3
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (617)
++.+|+||||.||||| .||.++|+. |++++++.++++... + .-.++|.|+.. .+.+.++++
T Consensus 5 ~~~~iIlA~G~~~R~g--~~K~l~~~~---g~pll~~~l~~l~~~----~--------~~~i~vv~~~~-~~~~~~~~~ 65 (197)
T 2wee_A 5 QITGVVLAAGRSNRLG--TPKQLLPYR---DTTVLGATLDVARQA----G--------FDQLILTLGGA-ASAVRAAMA 65 (197)
T ss_dssp EEEEEEEECCCCTTTS--SCGGGSEET---TEEHHHHHHHHHHHT----T--------CSEEEEEECTT-HHHHHHHSC
T ss_pred ceEEEEECCCCcccCC--CCeEcCeeC---CccHHHHHHHHHHhc----C--------CCcEEEEeCCC-HHHHHHHhc
Confidence 5788999999999997 799999995 999999999888643 1 11456666544 455555543
No 28
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*
Probab=97.21 E-value=0.00042 Score=67.01 Aligned_cols=64 Identities=20% Similarity=0.174 Sum_probs=46.8
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l 217 (617)
++.+|+||||.|||||...||.++|+. |++++++.++++... + ..-.++|.|+....+...+++
T Consensus 2 ~~~~vIlA~G~g~R~~~~~~K~l~~~~---g~pli~~~l~~l~~~----~-------~~~~i~vv~~~~~~~~~~~~~ 65 (223)
T 2xwl_A 2 ATVAVVPAAGSGERLRAGRPKAFVTLG---GTPLLEHALSGLRAS----G-------VIDRIVIAVPPALTDESKLVF 65 (223)
T ss_dssp CEEEEEECCCCCGGGTSSSCGGGSEET---TEEHHHHHHHHHHHH----S-------CCSEEEEEECGGGHHHHHHHT
T ss_pred ceEEEEECCccCcccCCCCCCeeeEEC---CeEHHHHHHHHHhcC----C-------CCCeEEEEEcccHHHHHHHHh
Confidence 467899999999999977899999995 999999999988654 1 012456666654434444443
No 29
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}
Probab=97.17 E-value=0.00026 Score=66.98 Aligned_cols=61 Identities=21% Similarity=0.201 Sum_probs=45.2
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (617)
++.+|+||||.||||| .||.++|+. |++++++.++++.... .-.++|.|+.. ++.+.++++
T Consensus 5 ~~~~iIlA~G~~~R~g--~~K~l~~~~---g~pli~~~l~~l~~~~------------~~~i~vv~~~~-~~~~~~~~~ 65 (199)
T 2waw_A 5 RVTGVVLAAGYSRRLG--TPKQLLPLG---DTTLLGATLAMARRCP------------FDQLIVTLGGA-ADEVLEKVE 65 (199)
T ss_dssp CEEEEEEESSCCTTTT--SCGGGCEET---TEEHHHHHHHHHHTSS------------CSEEEEEECTT-HHHHHHHSC
T ss_pred ceEEEEECCCCCCCCC--CCEEeCEeC---ccCHHHHHHHHHHhCC------------CCcEEEEeCCC-HHHHHHHhc
Confidence 5788999999999998 799999995 9999999998885330 12456666543 345555544
No 30
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=97.16 E-value=0.0035 Score=61.43 Aligned_cols=129 Identities=12% Similarity=0.079 Sum_probs=79.5
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
++.+|+||||.||||+ +|.++|+. |++++++.++++.+. + .--.++|-| .++.+.+++++
T Consensus 3 ~~~aiIlA~G~s~R~~---~K~l~~i~---Gkpli~~~i~~~~~~----~-------~~~~ivv~~---~~~~i~~~~~~ 62 (229)
T 1qwj_A 3 HLAALVLARGGSKGIP---LKNIKRLA---GVPLIGWVLRAALDA----G-------VFQSVWVST---DHDEIENVAKQ 62 (229)
T ss_dssp CEEEEEECCSCCSSSS---CTTTSEET---TEEHHHHHHHHHHHH----T-------CCSEEEEEE---SCHHHHHHHHH
T ss_pred cEEEEEEcCCCCCCCC---CcccceEC---CEEHHHHHHHHHHhC----C-------CcCEEEEEC---ChHHHHHHHHH
Confidence 5788999999999996 59999995 999999999988754 1 012355555 35678888875
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 007115 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (617)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~ 299 (617)
+ |. .++.+ ...+.. ..+.|.+.+..++..- .+.+++.+.+.|+++.
T Consensus 63 ~---g~-----~~~~~---------~~~~~~---------~~~~~~~~v~~al~~~--------~~~d~vlv~~~D~Pli 108 (229)
T 1qwj_A 63 F---GA-----QVHRR---------SSETSK---------DSSTSLDAIVEFLNYH--------NEVDIVGNIQATSPCL 108 (229)
T ss_dssp T---TC-----EEEEC---------CGGGSS---------TTCCHHHHHHHHHTTC--------TTCSEEEEECTTCTTC
T ss_pred c---CC-----EEEeC---------hhhhcC---------CCCcHHHHHHHHHHhc--------CCCCEEEEecCCCCcC
Confidence 3 32 11211 000000 1123334455555331 2468899999999986
Q ss_pred cccc-hHHHHHHhhcCCceeEEee
Q 007115 300 FKAI-PASLGVSATKQYHVNSLAV 322 (617)
Q Consensus 300 ~~~D-P~~lG~~~~~~~d~~~kvv 322 (617)
...+ -.++..+...+++..+-++
T Consensus 109 ~~~~i~~l~~~~~~~~~~~~~~~~ 132 (229)
T 1qwj_A 109 HPTDLQKVAEMIREEGYDSVFSVV 132 (229)
T ss_dssp CHHHHHHHHHHHHSSCCSEEEEEE
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEe
Confidence 4322 2345555566777655555
No 31
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*
Probab=97.16 E-value=0.0016 Score=65.09 Aligned_cols=128 Identities=16% Similarity=0.112 Sum_probs=79.2
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
++.+|+||||.||||| +|.++|+. |++++++.++++... + .-.++|.|.. +.+.+++++
T Consensus 2 ~~~aiIlA~G~g~R~~---~K~l~~~~---gkpli~~~l~~l~~~----~--------~~~ivvv~~~---~~i~~~~~~ 60 (262)
T 1vic_A 2 SFTVIIPARFASSRLP---GKPLADIK---GKPMIQHVFEKALQS----G--------ASRVIIATDN---ENVADVAKS 60 (262)
T ss_dssp CCEEEEECCCCCSSST---TGGGCEET---TEEHHHHHHHHHHHT----T--------CSEEEEEESC---HHHHHHHHH
T ss_pred CcEEEEEcCCCCCCCC---CCccccCC---CeEHHHHHHHHHHhC----C--------CceEEEECCc---HHHHHHHHh
Confidence 4678999999999997 59999995 999999999888643 1 1245666653 567777765
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 007115 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (617)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~ 299 (617)
+ |. .+ +... + ..|.|-|.+..+ ++.+...+-+++.+.+.|.++.
T Consensus 61 ~---~~-----~~--------~~~~--------~------~~~~g~~~~~~~------~~~l~~~~~~~vlv~~~D~P~i 104 (262)
T 1vic_A 61 F---GA-----EV--------CMTS--------V------NHNSGTERLAEV------VEKLAIPDNEIIVNIQGDEPLI 104 (262)
T ss_dssp T---TC-----EE--------EECC--------C------SSCCHHHHHHHH------HHHTTCCTTCEEEECCTTCTTC
T ss_pred c---CC-----EE--------EECC--------c------cccCChHHHHHH------HHHhccCCCCEEEEEeCCcCcc
Confidence 3 31 11 1110 0 123344432222 2222223568899999999876
Q ss_pred cccc-hHHHHHHhhcCCceeEEeeeC
Q 007115 300 FKAI-PASLGVSATKQYHVNSLAVPR 324 (617)
Q Consensus 300 ~~~D-P~~lG~~~~~~~d~~~kvv~r 324 (617)
...+ -.++..+...+++++.-+++.
T Consensus 105 ~~~~i~~l~~~~~~~~~~~~~~~~~~ 130 (262)
T 1vic_A 105 PPVIVRQVADNLAKFNVNMASLAVKI 130 (262)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEEEC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEEec
Confidence 4332 234556666677877666664
No 32
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=97.14 E-value=0.0006 Score=67.82 Aligned_cols=65 Identities=17% Similarity=0.267 Sum_probs=50.0
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (617)
++++|+||||.|||||.+.||.++|+. |++++++.++.+.+. . ..-.++|.|+....+...+++.
T Consensus 7 ~~~aIIlAaG~g~Rmg~~~~K~l~~l~---Gkpll~~~l~~~~~~----~-------~~~~ivVv~~~~~~~~~~~~~~ 71 (231)
T 3q80_A 7 EVVAIVPAAGSGERLAVGVPKAFYQLD---GQTLIERAVDGLLDS----G-------VVDTVVVAVPADRTDEARQILG 71 (231)
T ss_dssp CEEEEEECCCCCTTTCSSSCGGGCEET---TEEHHHHHHHHHHHT----S-------CCCEEEEEECGGGHHHHHHHHG
T ss_pred ceEEEEECCCCCccCCCCCCceEEEEC---CeEHHHHHHHHHHhC----C-------CCCeEEEECChHHHHHHHHHhc
Confidence 688999999999999988899999995 999999999987643 0 0124667776655455666554
No 33
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Probab=97.07 E-value=0.00054 Score=67.91 Aligned_cols=158 Identities=16% Similarity=0.112 Sum_probs=83.4
Q ss_pred eEEEEEcCCcCCcCCc---cCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 007115 141 AAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (617)
Q Consensus 141 vavvlLaGGlGTRLG~---~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l 217 (617)
+.+|+||||.||||+- +.||.++|+. |++++++.++++.+. + .-.++|.|+.. ++.+.+++
T Consensus 3 ~~avIlAaG~gtRl~~lt~~~pK~l~~i~---gkpli~~~l~~l~~~----g--------~~~i~vv~~~~-~~~i~~~~ 66 (259)
T 1tzf_A 3 SKAVILAGGLGTRLSEETIVKPKPMVEIG---GKPILWHIMKMYSVH----G--------IKDFIICCGYK-GYVIKEYF 66 (259)
T ss_dssp CEEEEEECSCC--------CCCGGGCEET---TEEHHHHHHHHHHHT----T--------CCEEEEEECTT-HHHHHHHH
T ss_pred cEEEEECCCCcccCCCccCCCCccccEEC---CEEHHHHHHHHHHHC----C--------CCEEEEEcccC-HHHHHHHH
Confidence 5678899999999985 6799999995 999999998888643 1 12457777654 47888998
Q ss_pred HhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCcc----ccccCCCchhhHhhhhcChhHHHHHcCceEEEEEe
Q 007115 218 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRI----QTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQ 293 (617)
Q Consensus 218 ~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i----~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~ 293 (617)
.++..++ .++.+..|+.--.+.. .. ..++.+ .-.+-|.|+....... .++ +-+++.+.+
T Consensus 67 ~~~~~~~---~~~~~~~~~~~~~~~~--~~-----~~~~~v~~~~~~~~~gt~~al~~a~~--~~~-----~~~~~lv~~ 129 (259)
T 1tzf_A 67 ANYFLHM---SDVTFHMAENRMEVHH--KR-----VEPWNVTLVDTGDSSMTGGRLKRVAE--YVK-----DDEAFLFTY 129 (259)
T ss_dssp HTHHHHH---SCEEEEGGGTEEEETT--CC-----CCCCEEEEEECCSSCCHHHHHHHTGG--GTT-----TSSCEEEEE
T ss_pred hhccccc---ccccccccccceeeee--cc-----ccccceeeeecccccCcHHHHHHHHH--hcC-----CCCcEEEEE
Confidence 8642110 1233333321000100 00 011111 0134566654433221 121 236777888
Q ss_pred CCCccccccchHHHHHHhhcCCceeEEeeeCCcccccceEE
Q 007115 294 DTNGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGIT 334 (617)
Q Consensus 294 vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~~~E~vG~i~ 334 (617)
-|++ ....--.++..+...++++.+..+. +....|.+.
T Consensus 130 ~D~~-~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~g~v~ 167 (259)
T 1tzf_A 130 GDGV-ADLDIKATIDFHKAHGKKATLTATF--PPGRFGALD 167 (259)
T ss_dssp TTEE-ECCCHHHHHHHHHHHCCSEEEEEEC--CCCCSEEEE
T ss_pred CCEe-cccCHHHHHHHHHHhCCeEEEEEec--CCCCccEEE
Confidence 8984 3222234566776677766543322 334456544
No 34
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*
Probab=97.07 E-value=0.00093 Score=67.47 Aligned_cols=64 Identities=19% Similarity=0.198 Sum_probs=50.1
Q ss_pred eEEEEEcCCcCCcCCc---cCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 007115 141 AAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (617)
Q Consensus 141 vavvlLaGGlGTRLG~---~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l 217 (617)
+.+|+||||.||||+- ..||.++|+. |++++++.++++... + .-.++|.|+ ...+.+.++|
T Consensus 3 ~~avIlAaG~gtRl~plt~~~pK~ll~i~---gkpli~~~l~~l~~~----g--------i~~i~vv~~-~~~~~i~~~~ 66 (281)
T 3juk_A 3 KKCLFPAAGYGTRFLPITKTIPKEMLPIV---DKPLIQYAVEEAMEA----G--------CEVMAIVTG-RNKRSLEDYF 66 (281)
T ss_dssp CEEEEECCSCCGGGTTGGGTSCGGGCBSS---SSBHHHHHHHHHHHH----T--------CCEEEEEEC-TTHHHHHHHT
T ss_pred eEEEEECCcCCcccCccccCCCcccceEC---CEEHHHHHHHHHHhC----C--------CCEEEEEec-CCHHHHHHHH
Confidence 4678999999999986 8899999996 999999999998753 2 123555555 4567888888
Q ss_pred HhC
Q 007115 218 ESN 220 (617)
Q Consensus 218 ~~~ 220 (617)
.+.
T Consensus 67 ~~~ 69 (281)
T 3juk_A 67 DTS 69 (281)
T ss_dssp SCC
T ss_pred hcc
Confidence 764
No 35
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0
Probab=97.07 E-value=0.00049 Score=68.49 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=45.5
Q ss_pred ceEEEEEcCCcCCcCCc-cCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007115 140 NAAFVLVAGGLGERLGY-NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~-~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (617)
++.+|+||||.|||||. +.||.++|+. |++++++.++.+... + ..-.++|.|+....+...+.++
T Consensus 3 ~~~aIIlAaG~g~Rm~~~~~pK~l~~l~---Gkpll~~~l~~~~~~----~-------~~~~ivvv~~~~~~~~~~~~~~ 68 (246)
T 3f1c_A 3 LIYAQILAGGKGTRMGNVSMPKQFLPLN---GKPIIVHTVEKFILN----T-------RFDKILISSPKEWMNHAEDNIK 68 (246)
T ss_dssp CEEEEEECC-----C-CSSCCGGGSEET---TEEHHHHHHHHHHTC----T-------TCSEEEEEECGGGHHHHHHHHH
T ss_pred ccEEEEECCccccccCCCCCCCeEEEEC---CeeHHHHHHHHHHcC----C-------CCCEEEEEeCHHHHHHHHHHHH
Confidence 57889999999999998 7799999995 999999999887532 0 0124667777655555677777
Q ss_pred hCC
Q 007115 219 SNS 221 (617)
Q Consensus 219 ~~~ 221 (617)
++.
T Consensus 69 ~~~ 71 (246)
T 3f1c_A 69 KYI 71 (246)
T ss_dssp HHC
T ss_pred HhC
Confidence 653
No 36
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=97.03 E-value=0.00093 Score=65.16 Aligned_cols=131 Identities=16% Similarity=0.066 Sum_probs=77.1
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
++.+|+||||.||||| ||.++|+. |++++++.++++.+. + ..-.++|.|. ++.+.+++++
T Consensus 4 ~~~aiIlA~G~g~R~~---~K~l~~i~---gkpll~~~l~~~~~~----~-------~~~~ivvv~~---~~~i~~~~~~ 63 (228)
T 1ezi_A 4 QNIAVILARQNSKGLP---LKNLRKMN---GISLLGHTINAAISS----K-------CFDRIIVSTD---GGLIAEEAKN 63 (228)
T ss_dssp EEEEEEECCSSCSSST---TTTTCEET---TEEHHHHHHHHHHHH----C-------CCSEEEEEES---CHHHHHHHHH
T ss_pred ceEEEEecCCCCCCCC---CcccceeC---CcCHHHHHHHHHHhC----C-------CCCEEEEECC---CHHHHHHHHH
Confidence 4778999999999999 99999995 999999999988654 1 0124566664 4667777765
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccc-cCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCcc
Q 007115 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTK-PHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (617)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~-P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L 298 (617)
+ |. ++ +. ..+ .+... ......++.++. .+ ..+.+++.+.+.|+++
T Consensus 64 ~---~~---~~--~~--------~~~-----------~~~~~~~g~~~sv~~~l~------~~-~~~~d~vlv~~~D~P~ 109 (228)
T 1ezi_A 64 F---GV---EV--VL--------RPA-----------ELASDTASSISGVIHALE------TI-GSNSGTVTLLQPTSPL 109 (228)
T ss_dssp T---TC---EE--EE--------CCC-----------------CHHHHHHHHHHH------HH-TCCSEEEEECCTTCTT
T ss_pred c---CC---EE--Ee--------Cch-----------HHcCCCCChHHHHHHHHH------Hh-CCCCCEEEEEcCCCCc
Confidence 3 32 11 11 100 00000 111222444432 22 2356899999999987
Q ss_pred ccccch-HHHHHHhhcCCceeEEeeeC
Q 007115 299 LFKAIP-ASLGVSATKQYHVNSLAVPR 324 (617)
Q Consensus 299 ~~~~DP-~~lG~~~~~~~d~~~kvv~r 324 (617)
....+. .++..+...+++++.-+++.
T Consensus 110 ~~~~~i~~l~~~~~~~~~~~~~~~~~~ 136 (228)
T 1ezi_A 110 RTGAHIREAFSLFDEKIKGSVVSACPM 136 (228)
T ss_dssp CCHHHHHHHHTTCCTTTCCCEEEEEEC
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEEEec
Confidence 543221 22333334456777666664
No 37
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A
Probab=97.02 E-value=0.00035 Score=68.07 Aligned_cols=41 Identities=17% Similarity=0.249 Sum_probs=27.5
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHH
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~ 183 (617)
++.+|+||||.|||||.+.||.++|+. |++++++.++++..
T Consensus 6 ~~~aiIlA~G~g~R~~~~~~K~l~~~~---gkpli~~~l~~l~~ 46 (231)
T 1vgw_A 6 KNIALIPAAGIGVRFGADKPKQYVEIG---SKTVLEHVLGIFER 46 (231)
T ss_dssp CEEEEEECC----------CCSCCEET---TEEHHHHHHHHHHT
T ss_pred ceEEEEEcccccccCCCCCCceEeEEC---CeEHHHHHHHHHHc
Confidence 578999999999999976799999995 99999999988763
No 38
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*
Probab=96.91 E-value=0.00047 Score=67.13 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=30.4
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHH
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~ 183 (617)
++.+|+||||.|||||.+.||.++|+. |++++++.++++.+
T Consensus 4 ~~~aiIlAaG~g~R~~~~~~K~l~~i~---g~pli~~~l~~l~~ 44 (228)
T 2yc3_A 4 SVSVILLAGGQGKRMKMSMPKQYIPLL---GQPIALYSFFTFSR 44 (228)
T ss_dssp CEEEEEECCCCC-------CGGGSEET---TEEHHHHHHHHHHH
T ss_pred ceEEEEECCccccccCCCCCccEeEEC---CEEHHHHHHHHHHc
Confidence 578899999999999977899999995 99999999888754
No 39
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*
Probab=96.86 E-value=0.00087 Score=65.21 Aligned_cols=65 Identities=23% Similarity=0.197 Sum_probs=40.9
Q ss_pred eEEEEEcCCcCCcCCc-cCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 141 AAFVLVAGGLGERLGY-NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 141 vavvlLaGGlGTRLG~-~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
+.+|+||||.|||||- +.||.++|+. |++++++.++++... + ..-.++|.|+....+.+.+++++
T Consensus 3 ~~~iIlA~G~g~R~~~~~~~K~l~~i~---g~pli~~~l~~l~~~----~-------~~~~i~vv~~~~~~~~~~~~~~~ 68 (236)
T 2vsh_A 3 IYAGILAGGTGTRMGISNLPKQFLELG---DRPILIHTIEKFVLE----P-------SIEKIVVGVHGDWVSHAEDLVDK 68 (236)
T ss_dssp EEEEEEEC-----------CGGGSEET---TEEHHHHHHHHHHTC----T-------TCCCEEEEECGGGHHHHHHHHHH
T ss_pred eEEEEeCCccccccCCCCCCCeeeeeC---CccHHHHHHHHHHcC----C-------CCCeEEEEeCHHHHHHHHHHHHh
Confidence 5679999999999985 6699999995 999999998887532 0 01256777776655678888775
No 40
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A
Probab=96.86 E-value=0.00059 Score=66.92 Aligned_cols=41 Identities=24% Similarity=0.365 Sum_probs=36.6
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHH
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~ 183 (617)
++.+|+||||.|||||.+.||.++|+. |++++++.++++..
T Consensus 7 ~~~~iIlA~G~g~R~~~~~~K~l~~i~---g~pll~~~i~~l~~ 47 (236)
T 1i52_A 7 DVCAVVPAAGFGRRMQTECPKQYLSIG---NQTILEHSVHALLA 47 (236)
T ss_dssp CEEEEEEECCCCGGGCCSSCGGGSEET---TEEHHHHHHHHHHT
T ss_pred ceeEEEECCcCccccCCCCCcceeeEC---CEEHHHHHHHHHHh
Confidence 578899999999999977899999995 99999999988863
No 41
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}
Probab=96.85 E-value=0.00075 Score=64.16 Aligned_cols=61 Identities=26% Similarity=0.394 Sum_probs=45.1
Q ss_pred EEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 142 avvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
.+|+||||.|||||- .||.++|+. |++++++.++++... .--.++|.|+.. ++.+.+++++
T Consensus 2 ~aiIlA~G~s~R~~~-~~K~l~~~~---g~pli~~~l~~l~~~------------~~~~v~vv~~~~-~~~i~~~~~~ 62 (196)
T 3rsb_A 2 DALIMAGGKGTRMGG-VEKPLIKLC---GRCLIDYVVSPLLKS------------KVNNIFIATSPN-TPKTKEYINS 62 (196)
T ss_dssp EEEEEC----CGGGG-SCGGGCEET---TEEHHHHHHHHHHSS------------SCCCEEEECCTT-CHHHHHHHHH
T ss_pred EEEEECCCCCCcCCC-CCccEEEEC---CEEHHHHHHHHHHHC------------CCCEEEEEeCCC-hHHHHHHHHh
Confidence 578999999999986 799999995 999999999988632 112567777765 6778899887
No 42
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13
Probab=96.76 E-value=0.00069 Score=66.16 Aligned_cols=41 Identities=29% Similarity=0.362 Sum_probs=36.6
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHH
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~ 183 (617)
.+..|+||||.|||||.+.||.++|+. |++++++.++++..
T Consensus 13 ~~~aiILAaG~s~Rm~~~~~K~l~~i~---Gkpli~~~i~~l~~ 53 (234)
T 1vpa_A 13 MNVAILLAAGKGERMSENVPKQFLEIE---GRMLFEYPLSTFLK 53 (234)
T ss_dssp CEEEEEEECCCCGGGCCSSCGGGCEET---TEETTHHHHHHHHH
T ss_pred cCeEEEEcCcchhhcCCCCCceEEEEC---CeEHHHHHHHHHHc
Confidence 478899999999999977799999995 99999999988764
No 43
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}
Probab=96.73 E-value=0.00097 Score=64.03 Aligned_cols=38 Identities=24% Similarity=0.303 Sum_probs=33.5
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHH
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECIL 182 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~ 182 (617)
++.+|+||||.|||||. ||.++|+. |+++++..++++.
T Consensus 2 ~~~~iIlAgG~g~Rmg~--~K~l~~i~---g~pll~~~l~~l~ 39 (197)
T 3d5n_A 2 NIGVIILAAGEGKRFGG--DKLLAKID---NTPIIMRTIRIYG 39 (197)
T ss_dssp CEEEEEECSCCTTCCCS--SGGGSBSS---SSBHHHHHHHHTT
T ss_pred ceEEEEECCcCcccCCC--CeeeCEeC---ceEHHHHHHHHHH
Confidence 36789999999999984 99999995 9999999988774
No 44
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*
Probab=96.69 E-value=0.001 Score=64.16 Aligned_cols=39 Identities=26% Similarity=0.356 Sum_probs=35.4
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHH
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECIL 182 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~ 182 (617)
++.+|+||||.||||| ..||.++|+. |+++++..++++.
T Consensus 6 ~~~~iILAgG~s~Rmg-~~~K~ll~i~---G~pli~~~l~~l~ 44 (201)
T 1e5k_A 6 TITGVVLAGGKARRMG-GVDKGLLELN---GKPLWQHVADALM 44 (201)
T ss_dssp SEEEEEECCCCCSSSC-SSCGGGSEET---TEEHHHHHHHHHH
T ss_pred cceEEEEcCCCCCcCC-CCCCceeeEC---ceeHHHHHHHHHH
Confidence 5788999999999998 5799999995 9999999999886
No 45
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Probab=96.64 E-value=0.0012 Score=66.06 Aligned_cols=42 Identities=24% Similarity=0.319 Sum_probs=37.0
Q ss_pred ceEEEEEcCCcCCcCC---ccCCcccCCcccCCCcchHHHHHHHHHHH
Q 007115 140 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILAL 184 (617)
Q Consensus 140 kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~gks~lql~~~~i~~l 184 (617)
++.+|+||||.||||+ .+.||.++|+. |++++++.++++...
T Consensus 25 ~~~aiIlAaG~gtRl~plt~~~pK~l~~i~---gkpli~~~l~~l~~~ 69 (254)
T 1jyk_A 25 RVKAIILAAGLGTRLRPLTENTPKALVQVN---QKPLIEYQIEFLKEK 69 (254)
T ss_dssp CCEEEEEECSCCGGGTTTTSSSCGGGCEET---TEEHHHHHHHHHHHT
T ss_pred CceEEEECCCCcccCCcccCCCCCEEeeEC---CEEHHHHHHHHHHHC
Confidence 5788999999999998 57899999995 999999999988643
No 46
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=96.60 E-value=0.01 Score=59.66 Aligned_cols=126 Identities=14% Similarity=0.089 Sum_probs=77.1
Q ss_pred eEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHH-HHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 007115 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYI-ECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (617)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~-~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (617)
..+|+||||.||||+ +|.++|+. |++++++.+ +++.+. + .-.++|-|. ++.+.+++++
T Consensus 2 ~~aiIlA~G~stR~~---~K~L~~i~---GkPli~~~i~~~~~~~----~--------~~~vvVvt~---~~~i~~~~~~ 60 (253)
T 4fcu_A 2 KHIVIPARFSSSRLP---GKPLLLIH---DRPMILRVVDQAKKVE----G--------FDDLCVATD---DERIAEICRA 60 (253)
T ss_dssp EEEEEECCSCCTTST---TGGGSEET---TEEHHHHHHHHHHTCT----T--------CCEEEEEES---CHHHHHHHHT
T ss_pred eEEEEEeCCCCCCCC---CCceeeEC---CeEhHHHHHHHHHHhc----C--------CCEEEEECC---HHHHHHHHHH
Confidence 467999999999997 59999995 999999999 876431 1 113456663 4778888765
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 007115 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (617)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sG~ld~l~~~G~eyi~v~~vDN~L~ 299 (617)
||.. ++.... . .|.|.+.++.++. .+...+.+++.+.+-|++|.
T Consensus 61 ---~g~~-------------v~~~~~-------~-------~~~Gt~~i~~a~~------~~~~~~~d~vlv~~gD~Pli 104 (253)
T 4fcu_A 61 ---EGVD-------------VVLTSA-------D-------HPSGTDRLSEVAR------IKGWDADDIIVNVQGDEPLL 104 (253)
T ss_dssp ---TTCC-------------EEECCT-------T-------CCCHHHHHHHHHH------HHTCCTTCEEEECCTTCTTC
T ss_pred ---cCCe-------------EEEeCC-------C-------CCChHHHHHHHHH------hcCcCCCCEEEEEeCCcccC
Confidence 3332 111100 0 1234444554443 23223568999999999986
Q ss_pred cccc-hHHHHHHhhc-CCceeEEeee
Q 007115 300 FKAI-PASLGVSATK-QYHVNSLAVP 323 (617)
Q Consensus 300 ~~~D-P~~lG~~~~~-~~d~~~kvv~ 323 (617)
..-+ -.++..+.++ +..+++-+++
T Consensus 105 ~~~~i~~li~~~~~~~~~~~at~~~~ 130 (253)
T 4fcu_A 105 PAQLVQQVAKLLVDKPNCSMSTLCEP 130 (253)
T ss_dssp CHHHHHHHHHHHHHCTTCSEEEEEEE
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEeEE
Confidence 4322 1234444444 4566666665
No 47
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=96.58 E-value=0.0012 Score=65.33 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=26.9
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHH
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIEC 180 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~ 180 (617)
++++|+||||.|||||.+ ||.++|+. |+++++..+++
T Consensus 25 ~~~aiILAgG~s~Rm~~~-~K~l~~i~---gkpli~~~l~~ 61 (236)
T 2px7_A 25 EVSVLIPAAGNGLRLGRG-PKAFLQVG---GRTLLEWTLAA 61 (236)
T ss_dssp CCEEEEECCC-------C-CGGGCBCS---SSBHHHHHHHH
T ss_pred ceEEEEEcCCCCccCCCC-CCeEEEEC---CEEHHHHHHHh
Confidence 578899999999999966 99999995 99999998887
No 48
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}
Probab=96.48 E-value=0.00055 Score=68.84 Aligned_cols=38 Identities=24% Similarity=0.409 Sum_probs=33.3
Q ss_pred EEEEcCCcCCcCC---ccCCcccCCcccCCCcchHHHHHHHHHH
Q 007115 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILA 183 (617)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~gks~lql~~~~i~~ 183 (617)
+|+||||.||||+ .+.||.++|+. |++++++.++++..
T Consensus 2 ~iIlAaG~GtRl~plt~~~PK~llpv~---gkpli~~~l~~l~~ 42 (255)
T 4evw_A 2 IVIPMAGMSSRFFKAGYTQPKYMLEAH---GQTLFEHSVNSFAA 42 (255)
T ss_dssp EEEECCSCCHHHHHTTCCSCGGGCEET---TEEHHHHHHGGGGG
T ss_pred EEEEcCCCCcccccCCCCCCccccEEC---CeEHHHHHHHHHhc
Confidence 6889999999996 37899999995 99999999988753
No 49
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}
Probab=96.47 E-value=0.0026 Score=64.94 Aligned_cols=64 Identities=17% Similarity=0.190 Sum_probs=49.1
Q ss_pred ceEEEEEcCCcCCcCCc---cCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 007115 140 NAAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~---~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~ 216 (617)
.+.+|+||||.||||+- +.||.++|+. |++++++.++++... + .-.++|.|+. ..+.+.++
T Consensus 8 ~~~avIlAaG~gtRl~plt~~~pK~ll~i~---gkpli~~~l~~l~~~----g--------i~~i~vv~~~-~~~~i~~~ 71 (302)
T 2e3d_A 8 VKKAVIPVAGLGTRMLPATKAIPKEMLPLV---DKPLIQYVVNECIAA----G--------ITEIVLVTHS-SKNSIENH 71 (302)
T ss_dssp CCEEEEECCSCCGGGTTTTSSSCGGGCEET---TEEHHHHHHHHHHHT----T--------CCEEEEEECG-GGHHHHHH
T ss_pred ccEEEEECCcCcccCCccccCCCceeeEEC---CeEHHHHHHHHHHHC----C--------CCEEEEEeCC-CHHHHHHH
Confidence 46789999999999984 6799999995 999999999988643 1 1135666665 46778888
Q ss_pred HHh
Q 007115 217 LES 219 (617)
Q Consensus 217 l~~ 219 (617)
+.+
T Consensus 72 ~~~ 74 (302)
T 2e3d_A 72 FDT 74 (302)
T ss_dssp HSC
T ss_pred Hhc
Confidence 764
No 50
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}
Probab=96.42 E-value=0.0022 Score=65.37 Aligned_cols=64 Identities=17% Similarity=0.139 Sum_probs=48.7
Q ss_pred ceEEEEEcCCcCCcCCc---cCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 007115 140 NAAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~---~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~ 216 (617)
.+.+|+||||.||||+- ..||.++|+. |++++++.++++... + .-.++|.|... .+.+.++
T Consensus 14 ~~~avIlAaG~gtRl~plt~~~pK~ll~i~---gkpli~~~l~~l~~~----g--------~~~i~vv~~~~-~~~i~~~ 77 (297)
T 2ux8_A 14 LRKAVFPVAGLGTRFLPATKAMPKEMLPVV---DRPLIQYAVDEAVEA----G--------IEQMIFVTGRG-KSALEDH 77 (297)
T ss_dssp CCEEEEEECCCCGGGTTTTSSSCGGGCEET---TEEHHHHHHHHHHHT----T--------CCEEEEEECTT-CHHHHHH
T ss_pred ccEEEEECCCCccccCccccCCCceeeeEC---CeEHHHHHHHHHHhC----C--------CCEEEEEeCCC-HHHHHHH
Confidence 56789999999999974 6799999995 999999999988643 1 11345666543 6778877
Q ss_pred HHh
Q 007115 217 LES 219 (617)
Q Consensus 217 l~~ 219 (617)
+.+
T Consensus 78 ~~~ 80 (297)
T 2ux8_A 78 FDI 80 (297)
T ss_dssp TSC
T ss_pred Hhh
Confidence 654
No 51
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}
Probab=96.42 E-value=0.0016 Score=63.59 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=33.2
Q ss_pred eEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHH
Q 007115 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECIL 182 (617)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~ 182 (617)
+..|+||||.|+||| .||.++|+. |+++++..++++.
T Consensus 1 m~aiILAgG~s~Rmg--~~K~ll~~~---G~pli~~~~~~l~ 37 (208)
T 3ngw_A 1 MKVAVLVGGVGRRIG--MEKTEVMLC---GKKLIEWVLEKYS 37 (208)
T ss_dssp CEEEEECCCCCTTTT--SCGGGCEET---TEEHHHHHHHHHT
T ss_pred CEEEEECCCchhhCC--CCCcccEEC---CeeHHHHHHHHhc
Confidence 367999999999999 899999995 9999999998874
No 52
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*
Probab=96.39 E-value=0.0028 Score=66.42 Aligned_cols=193 Identities=18% Similarity=0.143 Sum_probs=102.1
Q ss_pred eEEEEEcCCcCCcCC----ccCCcccCCcccCCC-cchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHH
Q 007115 141 AAFVLVAGGLGERLG----YNGIKVALPAETTTG-TCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (617)
Q Consensus 141 vavvlLaGGlGTRLG----~~~pK~~lpv~~~~g-ks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~ 215 (617)
+..|+||||.||||+ ...||.++|+. | +|++|..++++..+ .+ .-.++|.|.....+.+.+
T Consensus 2 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~---g~~pli~~~l~~l~~~---~~--------~~~iivvt~~~~~~~i~~ 67 (336)
T 2x65_A 2 MKALILAGGSGERFWPLSTPETPKQFLKLF---GNKSLMRWTFERVLEE---MD--------PKDVIVVTHKDYVERTKK 67 (336)
T ss_dssp CEEEEECCCBCGGGTTTSCTTCBGGGCCCB---TTBCHHHHHHHHHHTT---CC--------GGGEEEEEEGGGHHHHHH
T ss_pred eEEEEECCCCCccCCCCcCCCCCceEEECC---CCCcHHHHHHHHHhcc---CC--------CCcEEEEcChHHHHHHHH
Confidence 357889999999998 56899999995 6 99999999988643 01 123566666544455666
Q ss_pred HHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhH-hhhhcChhHHHHHcCceEEEEEeC
Q 007115 216 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHA-LLYSSGLLKEWHDAGLKWVLFFQD 294 (617)
Q Consensus 216 ~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~-aL~~sG~ld~l~~~G~eyi~v~~v 294 (617)
++.+.. ..+ ++..+ .|-|.|.... ++. . . .+-+++.+.+.
T Consensus 68 ~l~~~~-----~~~------------------ii~e~--------~~~gta~ai~~a~~------~-~-~~~~~~lvl~~ 108 (336)
T 2x65_A 68 ELPELP-----DEN------------------IIAEP--------MKKNTAPACFIGTK------L-A-DDDEPVLVLPA 108 (336)
T ss_dssp HCTTSC-----GGG------------------EEEES--------SCCCHHHHHHHHHT------T-S-CTTCEEEEEET
T ss_pred Hhhccc-----cce------------------EEeCC--------CCCCcHHHHHHHHH------h-h-CCCCEEEEEcC
Confidence 655421 001 22211 1223333222 221 0 1 22468889999
Q ss_pred CCccccccc--h---HHHHHHhhcCCceeEEeeeCCcccccceEEEEec-CCCceeEEEEeecCCCHHHhhcCCCCCCCc
Q 007115 295 TNGLLFKAI--P---ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTH-ADGRSMVINVEYNQLDPLLRATGFPDGDVN 368 (617)
Q Consensus 295 DN~L~~~~D--P---~~lG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~-~dG~~~v~nVEYsel~~~l~~~~~~~g~l~ 368 (617)
|.++....+ . .++-++.+++..+.+-+.+..|...-|.+..-.. .++-..| ..+.|.+..-.++. .+.
T Consensus 109 D~~~~~~~~~~~~l~~~~~~~~~~~~~vt~~i~p~~~~~~yG~I~~~~~~~~~~~~V--~~f~EKp~~~~a~~----~~~ 182 (336)
T 2x65_A 109 DHRIPDTKKFWKTVKKALDALEKYDGLFTFGIVPTRPETGYGYIEIGEELEEGVHKV--AQFREKPDLETAKK----FVE 182 (336)
T ss_dssp TCBCCCHHHHHHHHHHHHHHHHHHCSEEEEEECCCSCCSSSEEEEEEEEEETTEEEE--EEEEESCCHHHHHH----HHH
T ss_pred CceeccHHHHHHHHHHHHHHHHhcCCeEEEEeecccCCCCceEEEECCccCCCccEE--EEEEECCChHHHHH----HHh
Confidence 997643211 1 1223344446555555555556556676642100 0111223 34444443221110 000
Q ss_pred cCCCCCCCccceeeeeeehhhhHHHHhh
Q 007115 369 CETGYSPFPGNINQLILELGPYMEELKK 396 (617)
Q Consensus 369 ~~~gf~~f~gNinn~~~~L~~~~~~l~~ 396 (617)
.|. |.-|+..+.|+.+.+.+.+++
T Consensus 183 --~g~--y~~n~Giy~~~~~~ll~~l~~ 206 (336)
T 2x65_A 183 --SGR--FLWNSGMFLWKAREFIEEVKV 206 (336)
T ss_dssp --HTC--EEEEEEEEEEEHHHHHHHHHH
T ss_pred --cCC--eEEEeeeEEEEHHHHHHHHHH
Confidence 111 123999999999877666654
No 53
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*
Probab=96.32 E-value=0.0025 Score=62.35 Aligned_cols=61 Identities=21% Similarity=0.250 Sum_probs=39.6
Q ss_pred hcceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 007115 138 AKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (617)
Q Consensus 138 l~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l 217 (617)
..++.+|+||||.|||||-. ||.++|+. |++++++.++++... . -.++|.| +.++...+++
T Consensus 16 m~~~~~iIlA~G~g~R~~~~-~K~l~~i~---g~pli~~~l~~l~~~---~----------~~i~vv~--~~~~~~~~~~ 76 (232)
T 2xme_A 16 IKLMKAVILAAGLGTRLGGV-PKPLVRVG---GCEIILRTMKLLSPH---V----------SEFIIVA--SRYADDIDAF 76 (232)
T ss_dssp CCCEEEEEEECC------CC-CGGGCEET---TEEHHHHHHHHHGGG---E----------EEEEEEE--STTHHHHHHH
T ss_pred cccceEEEECCcCcCcCCCC-CcEEeEEC---CEEHHHHHHHHHHHh---C----------CEEEEEe--CChHHHHHHH
Confidence 44688999999999999743 99999995 999999998887533 1 1345656 4455666665
No 54
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}
Probab=96.16 E-value=0.00091 Score=64.45 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=34.8
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHH
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~ 183 (617)
++.+|+||||.||||| .||.++|+. |++++++.++++..
T Consensus 14 ~~~~iILA~G~g~Rmg--~~K~ll~i~---g~pll~~~l~~l~~ 52 (201)
T 2e8b_A 14 VNTCYVLAGGKSKRFG--EDKLLYEIK---GKKVIERVYETAKS 52 (201)
T ss_dssp CCEEEEEEESSCCCCS--TTHHHHHHH---HHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCccCC--CCcccceEC---ceEHHHHHHHHHHH
Confidence 5788999999999998 799999995 99999999988854
No 55
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=96.10 E-value=0.004 Score=64.49 Aligned_cols=62 Identities=24% Similarity=0.186 Sum_probs=46.2
Q ss_pred eEEEEEcCCcCCcCCc---cCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 007115 141 AAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (617)
Q Consensus 141 vavvlLaGGlGTRLG~---~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l 217 (617)
+.+|+||||.||||+- ..||.++|+. |++++++.++++... + .-.++|.|+. ..+.+.+++
T Consensus 13 ~~aVIlAaG~gtRl~plt~~~pK~ll~i~---gkpli~~~l~~l~~~----g--------i~~iivv~~~-~~~~i~~~~ 76 (323)
T 2pa4_A 13 KTVVVPAAGLGTRFLPATKTVPKELLPVV---DTPGIELIAAEAAEL----G--------ATRLAIITAP-NKAGVLAHF 76 (323)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGGGCEET---TEEHHHHHHHHHHHT----T--------CCEEEEEECT-TCHHHHHTT
T ss_pred eEEEEECCCCccccCccccCCCceeeeEC---CEEHHHHHHHHHHhC----C--------CCEEEEEecC-cHHHHHHHH
Confidence 5689999999999974 6799999995 999999999988642 2 1134566654 356666665
Q ss_pred H
Q 007115 218 E 218 (617)
Q Consensus 218 ~ 218 (617)
.
T Consensus 77 ~ 77 (323)
T 2pa4_A 77 E 77 (323)
T ss_dssp S
T ss_pred h
Confidence 4
No 56
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*
Probab=95.66 E-value=0.0068 Score=64.58 Aligned_cols=41 Identities=12% Similarity=0.107 Sum_probs=36.4
Q ss_pred ceEEEEEcCCcCCcCCccCCcccCCcccCCCcchHHHHHHHHHH
Q 007115 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (617)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~ 183 (617)
++++|+||||.|||||.+.||.++|+. |++++++.++++.+
T Consensus 3 ki~aIILAaG~ssRmg~~~pK~ll~l~---GkPLi~~~l~~l~~ 43 (371)
T 1w55_A 3 EMSLIMLAAGNSTRFNTKVKKQFLRLG---NDPLWLYATKNLSS 43 (371)
T ss_dssp CEEEEEECCSCCTTTCSSSCGGGCEEB---TEEHHHHHHHHHHT
T ss_pred ccEEEEECCCCCccCCCCCCcceEEEC---CeEHHHHHHHHHHc
Confidence 578899999999999977799999995 99999999988753
No 57
>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20
Probab=95.33 E-value=0.011 Score=61.98 Aligned_cols=40 Identities=30% Similarity=0.347 Sum_probs=34.7
Q ss_pred eEEEEEcCCcCCcCC----ccCCcccCCcccCCC-cchHHHHHHHHHH
Q 007115 141 AAFVLVAGGLGERLG----YNGIKVALPAETTTG-TCFLQNYIECILA 183 (617)
Q Consensus 141 vavvlLaGGlGTRLG----~~~pK~~lpv~~~~g-ks~lql~~~~i~~ 183 (617)
+..|+||||.||||. ...||.++|+. | +|++|..++++..
T Consensus 3 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~---G~~pli~~~l~~l~~ 47 (337)
T 2cu2_A 3 TYALVMAGGRGERLWPLSREDRPKPFLPLF---EGKTLLEATLERLAP 47 (337)
T ss_dssp EEEEEECCCCCGGGTTTCBTTBCGGGCBCG---GGCBHHHHHHHHHTT
T ss_pred eEEEEEcCCCcccCCccCCCCCCceEEEcC---CCChHHHHHHHHHhC
Confidence 568999999999996 46799999995 6 9999999998853
No 58
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Probab=95.14 E-value=0.018 Score=60.78 Aligned_cols=60 Identities=22% Similarity=0.281 Sum_probs=45.6
Q ss_pred EEEEEcCCcCCcCC---ccCCcccCCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 007115 142 AFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (617)
Q Consensus 142 avvlLaGGlGTRLG---~~~pK~~lpv~~~~gks~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (617)
.+|+||||.||||+ ...||.++|+. |++++++.++++.+. + .-.++|.|+.. +.++++
T Consensus 2 ~aiIlA~G~g~R~~plt~~~~K~ll~i~---g~pli~~~l~~l~~~----~--------~~~i~vv~~~~----i~~~~~ 62 (401)
T 2ggo_A 2 KAFILAAGSGERLEPITHTRPKAFVPIL---SKPLIEYQIEYLRKC----G--------IRDITVIVSSK----NKEYFE 62 (401)
T ss_dssp EEEEECCCCCGGGTTGGGTSCGGGCEET---TEEHHHHHHHHHHHT----T--------CCEEEEEECGG----GHHHHH
T ss_pred eEEEEcCcCccccCcccCCCCcceeeEC---CEeHHHHHHHHHHHC----C--------CCEEEEEeCHH----HHHHhh
Confidence 47899999999997 46799999995 999999999988643 1 11356666655 667776
Q ss_pred hC
Q 007115 219 SN 220 (617)
Q Consensus 219 ~~ 220 (617)
+.
T Consensus 63 ~~ 64 (401)
T 2ggo_A 63 KK 64 (401)
T ss_dssp HH
T ss_pred cc
Confidence 53
No 59
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19
Probab=94.74 E-value=0.018 Score=56.41 Aligned_cols=41 Identities=29% Similarity=0.520 Sum_probs=33.4
Q ss_pred ceEEEEEcCCc---CCcCCccCCcccCCcccCCCcchHHHHHHHHHHH
Q 007115 140 NAAFVLVAGGL---GERLGYNGIKVALPAETTTGTCFLQNYIECILAL 184 (617)
Q Consensus 140 kvavvlLaGGl---GTRLG~~~pK~~lpv~~~~gks~lql~~~~i~~l 184 (617)
++.+|+||||. |+||| ..||.++|+. |++++++.++++...
T Consensus 2 ~~~~vIlAaG~tRl~~r~~-~~~K~l~~i~---g~pll~~~l~~l~~~ 45 (232)
T 2dpw_A 2 RPSAIVLAGGKEAWAERFG-VGSKALVPYR---GRPMVEWVLEALYAA 45 (232)
T ss_dssp CCEEEEECCCBCSGGGTTT-CSBGGGSEET---TEETHHHHHHHHHHT
T ss_pred ceeEEEECCCCCccccccC-CCCceeeEEC---CEEHHHHHHHHHHhc
Confidence 35788999999 66665 3699999995 999999999988643
Done!