BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007116
(617 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 165 bits (418), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 149/266 (56%), Gaps = 5/266 (1%)
Query: 72 DEREESAVLELRQKLLERDLLPPRQDDYHTLLRFLKAREFNIERTIQMWEEMLIWRKEYG 131
D +E A+ ELR KLLE R DD TLLRFL+AR+F+++ +M+E WRK+YG
Sbjct: 27 DSAQEKALAELR-KLLEDAGFIERLDD-STLLRFLRARKFDVQLAKEMFENCEKWRKDYG 84
Query: 132 TDTIXXXXXXXXXXXVLQYYPQGYHGVDKEGRPVYIELLGKAHPSRLMRITTVDRYLKYH 191
TDTI + ++YPQ YH DK+GRPVY E LG + + ++T+ +R LK
Sbjct: 85 TDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNL 144
Query: 192 VQEFERALLERFPACSVAAKRRICSTTTILDVQGLGMKHFTRTAANLLAAVAKVDNCYYP 251
V E+E + R PACS AA + ++ TI+D++G+ + + + + + + YYP
Sbjct: 145 VWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISS-AYSVMSYVREASYISQNYYP 203
Query: 252 ETLHQMFIVNAGPGFKKMLWPAAQKFLDPKSIAKIHVLEPKSLGKLLEVIDASQLPDFLG 311
E + + +I+NA GF + + FLDP +++KI +L +LL+ I A LP G
Sbjct: 204 ERMGKFYIINAPFGFSTA-FRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFG 262
Query: 312 GSCTCS-VEGGCLRSNKGPWNEPEIM 336
G +GG S+ GPW +P+ +
Sbjct: 263 GKSEVDESKGGLYLSDIGPWRDPKYI 288
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/279 (34%), Positives = 153/279 (54%), Gaps = 13/279 (4%)
Query: 62 VPSVPIEDVRDEREESAVLELRQKLLERDLLPPRQDDYHTLLRFLKAREFNIERTIQMWE 121
+P P ++ E+EE A+L+ R LLE++ R DD TLLRFL+AR+F+I +++M+
Sbjct: 28 LPGTP-GNLTKEQEE-ALLQFRSILLEKNY-KERLDD-STLLRFLRARKFDINASVEMFV 83
Query: 122 EMLIWRKEYGTDTIXXXXXXXXXX------XVLQYYPQGYHGVDKEGRPVYIELLGKAHP 175
E WR+EYG +TI + + YPQ YH VDK+GRP+Y E LG +
Sbjct: 84 ETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFEELGGINL 143
Query: 176 SRLMRITTVDRYLKYHVQEFERALLERFPACSVAAKRRICSTTTILDVQGLGMKHFTRTA 235
++ +ITT + L+ V+E+E R PACS A I ++ T+LD++G+ + +
Sbjct: 144 KKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSN-AYHV 202
Query: 236 ANLLAAVAKVDNCYYPETLHQMFIVNAGPGFKKMLWPAAQKFLDPKSIAKIHVLEPKSLG 295
+ + VA + YYPE + + +I+++ GF M + + FLDP +++KI +L
Sbjct: 203 LSYIKDVADISQNYYPERMGKFYIIHSPFGFSTM-FKMVKPFLDPVTVSKIFILGSSYKK 261
Query: 296 KLLEVIDASQLPDFLGGSCTC-SVEGGCLRSNKGPWNEP 333
+LL+ I LP GG+ + S+ GPW +P
Sbjct: 262 ELLKQIPIENLPVKYGGTSVLHNPNDKFYYSDIGPWRDP 300
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 145 bits (366), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 94/279 (33%), Positives = 152/279 (54%), Gaps = 13/279 (4%)
Query: 62 VPSVPIEDVRDEREESAVLELRQKLLERDLLPPRQDDYHTLLRFLKAREFNIERTIQMWE 121
+P P ++ E+EE A+L+ R LLE++ R DD TLLRFL+AR+F+I +++M+
Sbjct: 28 LPGTP-GNLTKEQEE-ALLQFRSILLEKNY-KERLDD-STLLRFLRARKFDINASVEMFV 83
Query: 122 EMLIWRKEYGTDTIXXXXXXXXXX------XVLQYYPQGYHGVDKEGRPVYIELLGKAHP 175
E WR+EYG +TI + + YPQ YH VDK+GRP+Y LG +
Sbjct: 84 ETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINL 143
Query: 176 SRLMRITTVDRYLKYHVQEFERALLERFPACSVAAKRRICSTTTILDVQGLGMKHFTRTA 235
++ +ITT + L+ V+E+E R PACS A I ++ T+LD++G+ + +
Sbjct: 144 KKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSN-AYHV 202
Query: 236 ANLLAAVAKVDNCYYPETLHQMFIVNAGPGFKKMLWPAAQKFLDPKSIAKIHVLEPKSLG 295
+ + VA + YYPE + + +I+++ GF M + + FLDP +++KI +L
Sbjct: 203 LSYIKDVADISQNYYPERMGKFYIIHSPFGFSTM-FKMVKPFLDPVTVSKIFILGSSYKK 261
Query: 296 KLLEVIDASQLPDFLGGSCTC-SVEGGCLRSNKGPWNEP 333
+LL+ I LP GG+ + S+ GPW +P
Sbjct: 262 ELLKQIPIENLPVKYGGTSVLHNPNDKFYYSDIGPWRDP 300
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 119/244 (48%), Gaps = 10/244 (4%)
Query: 74 REESAVLELRQKLLERDLLP--PRQDDYHTLLRFLKAREFNIERTIQMWEEMLIWRKEYG 131
R++ A+ + R+ + +D+LP P DDY LLR+L+AR F+++++ M + + +RK+
Sbjct: 11 RQKEALAKFRENV--QDVLPALPNPDDYF-LLRWLRARSFDLQKSEAMLRKHVEFRKQKD 67
Query: 132 TDTIXXXXXXXXXXXVLQYYPQGYHGVDKEGRPVYIELLGKAHPSRLMRITTVDRYLKYH 191
D I + QY G G D +G PV+ +++G L+ + L+
Sbjct: 68 IDNI---ISWQPPEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTK 124
Query: 192 VQEFERALLERFPACSVAAKRRICSTTTILDVQGLGMKHFTRTAANLLAAVAKVDNCYYP 251
++E E LL+ + R++ + T I D +GLG+KH + A + YP
Sbjct: 125 MRECE-LLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYP 183
Query: 252 ETLHQMFIVNAGPGFKKMLWPAAQKFLDPKSIAKIHVLEPKSLGKLLEVIDASQLPDFLG 311
ETL ++F+V A P + + + FL + KI VL LL+ I Q+P G
Sbjct: 184 ETLKRLFVVKA-PKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEYG 242
Query: 312 GSCT 315
G+ T
Sbjct: 243 GTMT 246
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 119/244 (48%), Gaps = 10/244 (4%)
Query: 74 REESAVLELRQKLLERDLLP--PRQDDYHTLLRFLKAREFNIERTIQMWEEMLIWRKEYG 131
R++ A+ + R+ + +D+LP P DDY LLR+L+AR F+++++ M + + +RK+
Sbjct: 11 RQKEALAKFRENV--QDVLPALPNPDDYF-LLRWLRARSFDLQKSEAMLRKHVEFRKQKD 67
Query: 132 TDTIXXXXXXXXXXXVLQYYPQGYHGVDKEGRPVYIELLGKAHPSRLMRITTVDRYLKYH 191
D I + QY G G D +G PV+ +++G L+ + L+
Sbjct: 68 IDNI---ISWQPPEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTK 124
Query: 192 VQEFERALLERFPACSVAAKRRICSTTTILDVQGLGMKHFTRTAANLLAAVAKVDNCYYP 251
++E E LL+ + R++ + T I D +GLG+KH + A + YP
Sbjct: 125 MRECE-LLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYP 183
Query: 252 ETLHQMFIVNAGPGFKKMLWPAAQKFLDPKSIAKIHVLEPKSLGKLLEVIDASQLPDFLG 311
ETL ++F+V A P + + + FL + KI VL LL+ I Q+P G
Sbjct: 184 ETLKRLFVVKA-PKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEYG 242
Query: 312 GSCT 315
G+ T
Sbjct: 243 GTMT 246
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 116/244 (47%), Gaps = 10/244 (4%)
Query: 74 REESAVLELRQKLLERDLLP--PRQDDYHTLLRFLKAREFNIERTIQMWEEMLIWRKEYG 131
R++ A+ + R+ + +D+LP P DDY LLR+L+AR F+++++ + + +RK+
Sbjct: 11 RQKEALAKFRENV--QDVLPALPNPDDYF-LLRWLRARSFDLQKSEAXLRKHVEFRKQKD 67
Query: 132 TDTIXXXXXXXXXXXVLQYYPQGYHGVDKEGRPVYIELLGKAHPSRLMRITTVDRYLKYH 191
D I + QY G G D +G PV+ +++G L+ + L+
Sbjct: 68 IDNI---ISWQPPEVIQQYLSGGXCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTK 124
Query: 192 VQEFERALLERFPACSVAAKRRICSTTTILDVQGLGMKHFTRTAANLLAAVAKVDNCYYP 251
+E E LL+ + R++ + T I D +GLG+KH + A YP
Sbjct: 125 XRECE-LLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCXFEENYP 183
Query: 252 ETLHQMFIVNAGPGFKKMLWPAAQKFLDPKSIAKIHVLEPKSLGKLLEVIDASQLPDFLG 311
ETL ++F+V A P + + + FL + KI VL LL+ I Q+P G
Sbjct: 184 ETLKRLFVVKA-PKLFPVAYNLIKPFLSEDTRKKIXVLGANWKEVLLKHISPDQVPVEYG 242
Query: 312 GSCT 315
G+ T
Sbjct: 243 GTXT 246
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 76/196 (38%), Gaps = 18/196 (9%)
Query: 94 PRQDDYHTLLRFLKAREFNIERTIQMWEEMLIWRKEYGTDTIXXXXXXXXXXXVLQYYPQ 153
P D + LLRFL+AR+F+++ ++ + WR E ++
Sbjct: 46 PLTDSF--LLRFLRARDFDLDLAWRLLKNYYKWRAE-----CPEISADLHPRSIIGLLKA 98
Query: 154 GYHGVDKEGRPVYIELLGKAHPSRLMRITTVDRYLKYHVQEFERALL-ERFPACSVAAKR 212
GYHGV + P ++L + RI D + F +L+ V +R
Sbjct: 99 GYHGVLRSRDPTGSKVL-------IYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQR 151
Query: 213 RICSTTTILDVQGLGMKHFTRTAANLLAAVAKVDNCYYPETLHQMFIVNAGPGFKKMLWP 272
I D++G H + ++ +A V +P + + ++N P ++
Sbjct: 152 N--GIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINE-PVIFHAVFS 208
Query: 273 AAQKFLDPKSIAKIHV 288
+ FL K +IH+
Sbjct: 209 MIKPFLTEKIKERIHM 224
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 75/195 (38%), Gaps = 18/195 (9%)
Query: 94 PRQDDYHTLLRFLKAREFNIERTIQMWEEMLIWRKEYGTDTIXXXXXXXXXXXVLQYYPQ 153
P D + LLRFL+AR+F+++ ++ + WR E ++
Sbjct: 30 PLTDSF--LLRFLRARDFDLDLAWRLLKNYYKWRAE-----CPEISADLHPRSIIGLLKA 82
Query: 154 GYHGVDKEGRPVYIELLGKAHPSRLMRITTVDRYLKYHVQEFERALL-ERFPACSVAAKR 212
GYHGV + P ++L + RI D + F +L+ V +R
Sbjct: 83 GYHGVLRSRDPTGSKVL-------IYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQR 135
Query: 213 RICSTTTILDVQGLGMKHFTRTAANLLAAVAKVDNCYYPETLHQMFIVNAGPGFKKMLWP 272
I D++G H + ++ +A V +P + + ++N P ++
Sbjct: 136 N--GIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINE-PVIFHAVFS 192
Query: 273 AAQKFLDPKSIAKIH 287
+ FL K +IH
Sbjct: 193 XIKPFLTEKIKERIH 207
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 43/219 (19%), Positives = 83/219 (37%), Gaps = 15/219 (6%)
Query: 95 RQDDYHTLLRFLKAREFNIERTIQMWEEMLIWRKEYGTDTIXXXXXXXXXXXVLQYYPQG 154
++ D LRF++AR+FN+ R ++ + +R +Y + + YP
Sbjct: 88 QEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQY-PELFDSLSPEAVRCTIEAGYPGV 146
Query: 155 YHGVDKEGRPVYIELLGKAHPSRLMRITTVDRYLKYHVQEFERALLERFPACSVAAKRRI 214
DK GR V + + + T D L+ + E+ LLE + +I
Sbjct: 147 LSSRDKYGRVVMLFNIENWQSQEI----TFDEILQAYCFILEK-LLEN-------EETQI 194
Query: 215 CSTTTILDVQGLGMKHFTRTAANLLAAVAKVDNCYYPETLHQMFIVNAGPGFKKMLWPAA 274
I + +G M+ + L + + +P + ++ P + +
Sbjct: 195 NGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPARFKAIHFIHQ-PWYFTTTYNVV 253
Query: 275 QKFLDPKSIAKIHVLEPKSLGKLLEVIDASQLPDFLGGS 313
+ FL K + ++ V L + ID + LP GG+
Sbjct: 254 KPFLKSKLLERVFV-HGDDLSGFYQEIDENILPSDFGGT 291
>pdb|3CWG|A Chain A, Unphosphorylated Mouse Stat3 Core Fragment
pdb|3CWG|B Chain B, Unphosphorylated Mouse Stat3 Core Fragment
Length = 562
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 554 HKPAAIPLEKEQMLVESLQRIKSVESDLEKTKKVL 588
H AA+ EK+QML + LQ ++ DLE+ KV+
Sbjct: 5 HPTAAVVTEKQQMLEQHLQDVRKRVQDLEQKMKVV 39
>pdb|1BG1|A Chain A, Transcription Factor Stat3bDNA COMPLEX
Length = 596
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 554 HKPAAIPLEKEQMLVESLQRIKSVESDLEKTKKVL 588
H AA+ EK+QML + LQ ++ DLE+ KV+
Sbjct: 5 HPTAAVVTEKQQMLEQHLQDVRKRVQDLEQKMKVV 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,345,459
Number of Sequences: 62578
Number of extensions: 704606
Number of successful extensions: 1831
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1805
Number of HSP's gapped (non-prelim): 16
length of query: 617
length of database: 14,973,337
effective HSP length: 105
effective length of query: 512
effective length of database: 8,402,647
effective search space: 4302155264
effective search space used: 4302155264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)