Query 007116
Match_columns 617
No_of_seqs 372 out of 1567
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 19:09:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007116.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007116hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1471 Phosphatidylinositol t 100.0 4.7E-45 1E-49 384.4 22.8 278 61-342 6-288 (317)
2 KOG1470 Phosphatidylinositol t 100.0 2E-34 4.4E-39 297.7 18.0 217 77-316 27-245 (324)
3 PF00650 CRAL_TRIO: CRAL/TRIO 100.0 7.1E-30 1.5E-34 240.8 10.2 156 147-313 3-159 (159)
4 smart00516 SEC14 Domain in hom 100.0 6.3E-28 1.4E-32 227.3 14.7 154 147-315 5-158 (158)
5 cd00170 SEC14 Sec14p-like lipi 99.9 9.3E-25 2E-29 203.0 14.4 144 156-313 14-157 (157)
6 PF13716 CRAL_TRIO_2: Divergen 99.4 4.9E-13 1.1E-17 125.8 4.9 138 156-316 7-146 (149)
7 PF03765 CRAL_TRIO_N: CRAL/TRI 98.6 3.6E-08 7.7E-13 77.6 4.7 47 76-123 1-55 (55)
8 KOG4406 CDC42 Rho GTPase-activ 98.0 2E-05 4.3E-10 84.3 9.0 126 158-305 89-214 (467)
9 COG4064 MtrG Tetrahydromethano 87.1 0.79 1.7E-05 37.6 3.6 28 526-553 8-35 (75)
10 TIGR01149 mtrG N5-methyltetrah 85.0 0.88 1.9E-05 37.4 2.9 28 526-553 5-32 (70)
11 PRK01026 tetrahydromethanopter 84.3 0.97 2.1E-05 38.0 2.9 28 526-553 8-35 (77)
12 PF04210 MtrG: Tetrahydrometha 82.1 1.3 2.8E-05 36.5 2.7 28 526-553 5-32 (70)
13 PF10805 DUF2730: Protein of u 59.3 79 0.0017 28.3 9.0 33 532-564 34-66 (106)
14 PF14555 UBA_4: UBA-like domai 58.6 33 0.00071 25.4 5.5 36 77-121 2-37 (43)
15 PF02845 CUE: CUE domain; Int 50.4 39 0.00085 24.8 4.7 38 77-122 3-40 (42)
16 smart00546 CUE Domain that may 47.4 44 0.00095 24.6 4.6 38 77-122 4-41 (43)
17 TIGR02132 phaR_Bmeg polyhydrox 46.8 63 0.0014 31.7 6.6 73 532-605 71-154 (189)
18 KOG1962 B-cell receptor-associ 46.7 91 0.002 31.6 8.1 73 533-605 114-191 (216)
19 PHA01750 hypothetical protein 46.1 88 0.0019 25.7 6.3 42 565-608 30-71 (75)
20 TIGR03752 conj_TIGR03752 integ 41.7 1.3E+02 0.0029 33.9 9.1 73 530-602 56-135 (472)
21 KOG3313 Molecular chaperone Pr 40.5 1.6E+02 0.0034 29.0 8.2 63 546-608 21-86 (187)
22 TIGR03185 DNA_S_dndD DNA sulfu 40.2 1.1E+02 0.0023 36.1 8.8 65 532-598 390-454 (650)
23 KOG0612 Rho-associated, coiled 37.9 87 0.0019 39.1 7.4 60 534-606 442-504 (1317)
24 PF05377 FlaC_arch: Flagella a 35.5 97 0.0021 24.7 4.9 15 541-555 1-15 (55)
25 PF10368 YkyA: Putative cell-w 34.0 1.3E+02 0.0029 30.1 7.1 78 532-609 31-112 (204)
26 COG1340 Uncharacterized archae 33.9 2.7E+02 0.0059 29.6 9.5 64 535-607 109-172 (294)
27 KOG0249 LAR-interacting protei 32.9 2.3E+02 0.0051 33.6 9.4 75 531-605 171-249 (916)
28 PRK10884 SH3 domain-containing 30.6 1.7E+02 0.0036 29.5 7.1 70 538-607 98-167 (206)
29 PHA00687 hypothetical protein 30.3 1.1E+02 0.0024 23.3 4.2 30 557-586 9-48 (56)
30 PF04740 LXG: LXG domain of WX 30.1 1.6E+02 0.0034 28.9 6.8 113 469-594 43-160 (204)
31 PF10212 TTKRSYEDQ: Predicted 29.6 2.6E+02 0.0056 32.1 9.0 54 534-598 442-509 (518)
32 PF08317 Spc7: Spc7 kinetochor 29.0 2.5E+02 0.0054 30.1 8.6 73 534-606 178-250 (325)
33 PF12718 Tropomyosin_1: Tropom 28.9 1.3E+02 0.0029 28.4 5.8 67 532-598 34-106 (143)
34 PF13080 DUF3926: Protein of u 28.4 56 0.0012 24.4 2.4 23 582-607 13-35 (44)
35 KOG1838 Alpha/beta hydrolase [ 27.7 3.9E+02 0.0085 29.8 9.9 89 160-274 122-216 (409)
36 PF01496 V_ATPase_I: V-type AT 27.2 2.1E+02 0.0047 34.3 8.5 64 543-606 204-271 (759)
37 PF13234 rRNA_proc-arch: rRNA- 25.8 2.3E+02 0.005 29.2 7.5 70 535-607 182-263 (268)
38 PF05276 SH3BP5: SH3 domain-bi 25.7 4.3E+02 0.0092 27.3 9.2 55 536-592 94-148 (239)
39 PF03961 DUF342: Protein of un 25.7 2.9E+02 0.0064 30.9 8.8 56 533-588 341-398 (451)
40 PF14712 Snapin_Pallidin: Snap 25.7 1.5E+02 0.0032 25.4 5.0 33 575-607 10-42 (92)
41 PF10158 LOH1CR12: Tumour supp 24.6 2.4E+02 0.0053 26.3 6.6 63 536-599 52-114 (131)
42 PF15294 Leu_zip: Leucine zipp 24.4 1.8E+02 0.0039 30.7 6.3 61 540-611 190-250 (278)
43 PF11802 CENP-K: Centromere-as 24.0 4.6E+02 0.0099 27.6 9.0 40 531-570 50-89 (268)
44 PLN03214 probable enoyl-CoA hy 24.0 2.5E+02 0.0054 29.3 7.4 22 591-612 250-271 (278)
45 PF05529 Bap31: B-cell recepto 23.4 2.3E+02 0.0049 27.8 6.5 65 532-597 117-185 (192)
46 PHA02562 46 endonuclease subun 22.5 2.2E+02 0.0049 32.4 7.3 75 532-607 298-372 (562)
47 TIGR02132 phaR_Bmeg polyhydrox 22.3 3.1E+02 0.0067 27.1 6.9 15 541-555 115-129 (189)
48 PF04880 NUDE_C: NUDE protein, 22.2 1.1E+02 0.0023 29.9 3.8 32 562-594 4-35 (166)
49 PRK00117 recX recombination re 21.4 87 0.0019 29.6 3.1 77 43-124 78-154 (157)
50 PF05335 DUF745: Protein of un 21.4 1.5E+02 0.0032 29.6 4.7 31 561-591 140-177 (188)
51 COG4479 Uncharacterized protei 20.8 2.4E+02 0.0053 23.6 5.0 48 80-127 22-72 (74)
52 PF05276 SH3BP5: SH3 domain-bi 20.3 4.7E+02 0.01 27.1 8.2 74 535-608 144-227 (239)
53 PRK09039 hypothetical protein; 20.1 6.9E+02 0.015 27.1 10.0 17 485-501 29-45 (343)
54 COG1842 PspA Phage shock prote 20.1 8.2E+02 0.018 25.0 9.9 61 532-602 58-118 (225)
55 PF11221 Med21: Subunit 21 of 20.0 2.4E+02 0.0052 26.6 5.7 59 539-606 79-138 (144)
No 1
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=4.7e-45 Score=384.39 Aligned_cols=278 Identities=43% Similarity=0.726 Sum_probs=247.0
Q ss_pred cCCCcccccCCC--HHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCcccc
Q 007116 61 RVPSVPIEDVRD--EREESAVLELRQKLLERDLLPPRQDDYHTLLRFLKAREFNIERTIQMWEEMLIWRKEYGTDTILED 138 (617)
Q Consensus 61 ~~~~~~~edl~d--~~e~~aL~eLR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~~~l~WRk~~~~d~i~~d 138 (617)
.++.++.+++.+ +.+.+.++++| |+..+++++..++|+.+||||||||+||+++|++||.+++.||+.+..+.+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~i~~lr-~~~~~~~l~~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~ 84 (317)
T KOG1471|consen 6 MLAKVAKEELNEITESEEAVIAQLR-WLLQKPHLPNKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFED 84 (317)
T ss_pred ccccccccccCCCcHHHHHHHHHHH-HHhhccCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhc
Confidence 445555666665 44677777777 999999999755555799999999999999999999999999999999998876
Q ss_pred hhhHHHHHHHhhcccccccCCCCCCcEEEEecCCCCcccccccccHHHHHHHHHHHHHHHHHhhcccchhhhcCCcCcEE
Q 007116 139 FEFEELEEVLQYYPQGYHGVDKEGRPVYIELLGKAHPSRLMRITTVDRYLKYHVQEFERALLERFPACSVAAKRRICSTT 218 (617)
Q Consensus 139 ~~~~el~~v~~~~p~~~~G~Dk~GRpV~i~rlg~~Dp~kl~~~~t~~~~ir~~v~~lE~~l~~~~p~cs~~~~~~i~g~t 218 (617)
......+.+++|.+++|.|++|+||++.+.|..|+..++..+...++.++++..+|..+..+++.|....+++++|++
T Consensus 85 --~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~ 162 (317)
T KOG1471|consen 85 --FEEDDELLKYYPQGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIV 162 (317)
T ss_pred --cccchhhhhhccccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeE
Confidence 233344566889999999999999999999999999999999999999999999999999888888887788999999
Q ss_pred EEEeCCCCCcCCcchHHHHHHHHHHHhcccccccccceEEEEeCChhHHHHHHHHHhhcCChhhhceeEEcCCCchhHHH
Q 007116 219 TILDVQGLGMKHFTRTAANLLAAVAKVDNCYYPETLHQMFIVNAGPGFKKMLWPAAQKFLDPKSIAKIHVLEPKSLGKLL 298 (617)
Q Consensus 219 vIiDl~G~sl~~~~~~~~~llk~i~kilq~~YPerL~~i~IINaP~~f~~~lw~lvKpFL~~ktr~KI~~~~~~~~~~L~ 298 (617)
+|+|++|+++.|+....+..++.++.+++++||++++++||||+|++| .++|++|||||+++|++||+++++++.++|+
T Consensus 163 ~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f-~~~~~~ikpfL~~kt~~ki~~~~~~~~~~L~ 241 (317)
T KOG1471|consen 163 TIFDLKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTIF-SALWKVVKPFLDEKTRKKIHVLHSKDKESLL 241 (317)
T ss_pred EEEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhH-HHHHHHHhccCCHHHHhhheecCCCchhhhh
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999966556799999
Q ss_pred ccCCCCCCCccCCCCCCCCC---CCCcccCCCCCCCcHHHHHHHhhh
Q 007116 299 EVIDASQLPDFLGGSCTCSV---EGGCLRSNKGPWNEPEIMKLVHNA 342 (617)
Q Consensus 299 e~Id~s~LP~eyGGt~~~~~---~~gcl~~~~gpw~dp~i~~~v~~~ 342 (617)
++|+++.||++|||++++.+ .++|..++.+||.++.+.+.....
T Consensus 242 k~i~~~~LP~~yGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (317)
T KOG1471|consen 242 KYIPPEVLPEEYGGTCGDLDDPNGGGCDLSDEGPWKEPEIKKGKQEI 288 (317)
T ss_pred hhCCHhhCccccCCCccccccccCCcCcccccccccccccccccccc
Confidence 99999999999999999964 467999999999998765544333
No 2
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=2e-34 Score=297.74 Aligned_cols=217 Identities=28% Similarity=0.412 Sum_probs=178.1
Q ss_pred HHHHHHHHHHHc-CCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCC-cccchhhHHHHHHHhhcccc
Q 007116 77 SAVLELRQKLLE-RDLLPPRQDDYHTLLRFLKAREFNIERTIQMWEEMLIWRKEYGTDT-ILEDFEFEELEEVLQYYPQG 154 (617)
Q Consensus 77 ~aL~eLR~~L~~-~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~~~l~WRk~~~~d~-i~~d~~~~el~~v~~~~p~~ 154 (617)
..+.+.+..+.. ........+| .++||||||||||+++|.+||.++|.||+.+++.. +..+....++ ....++
T Consensus 27 ~k~~~~~~~~~pl~~~~~~~~~d-~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~~~~~Ev~~e~----~tGK~y 101 (324)
T KOG1470|consen 27 DKINSVKKLLGPLTEKESKWCSD-ACLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEVIEADEVAAEL----ETGKAY 101 (324)
T ss_pred HHHHHHHHhhcchhhhhHhcCcH-HHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCccccCHHHHHHHh----hcCcEE
Confidence 455555555521 1111233456 59999999999999999999999999999999866 4333222222 223344
Q ss_pred cccCCCCCCcEEEEecCCCCcccccccccHHHHHHHHHHHHHHHHHhhcccchhhhcCCcCcEEEEEeCCCCCcCCcchH
Q 007116 155 YHGVDKEGRPVYIELLGKAHPSRLMRITTVDRYLKYHVQEFERALLERFPACSVAAKRRICSTTTILDVQGLGMKHFTRT 234 (617)
Q Consensus 155 ~~G~Dk~GRpV~i~rlg~~Dp~kl~~~~t~~~~ir~~v~~lE~~l~~~~p~cs~~~~~~i~g~tvIiDl~G~sl~~~~~~ 234 (617)
+.|+|++||||+|+++....++.. +..++.|+.|+++|.++..+ ...+++++++||++|++++|.+
T Consensus 102 i~G~D~~gRPVl~~~~~~~~qn~~----t~~~~~r~~Vy~mE~Ai~~l--------p~~qe~~~~L~D~~~fs~sN~d-- 167 (324)
T KOG1470|consen 102 ILGHDKDGRPVLYLRPRPHRQNTK----TQKELERLLVYTLENAILFL--------PPGQEQFVWLFDLTGFSMSNPD-- 167 (324)
T ss_pred EecccCCCCeEEEEecCCCCCCCC----CHHHHHHHHHHHHHHHHHhC--------CCCcceEEEEEecccCcccCCC--
Confidence 678999999999998776665554 89999999999999998864 4567889999999999999988
Q ss_pred HHHHHHHHHHhcccccccccceEEEEeCChhHHHHHHHHHhhcCChhhhceeEEcCCCchhHHHccCCCCCCCccCCCCC
Q 007116 235 AANLLAAVAKVDNCYYPETLHQMFIVNAGPGFKKMLWPAAQKFLDPKSIAKIHVLEPKSLGKLLEVIDASQLPDFLGGSC 314 (617)
Q Consensus 235 ~~~llk~i~kilq~~YPerL~~i~IINaP~~f~~~lw~lvKpFL~~ktr~KI~~~~~~~~~~L~e~Id~s~LP~eyGGt~ 314 (617)
+...+.+++++|+||||||+..+|+|+||+| ..+|+++||||+|+|++||.|..+ .+.|.++||+++||..|||+.
T Consensus 168 -~~~~k~~~~~lq~hYPErLg~a~l~~~P~iF-~~~wkiikpflDp~t~~Kv~F~~~--~~~l~~~~d~~~l~s~~GG~~ 243 (324)
T KOG1470|consen 168 -IKFLKELLHILQDHYPERLGKALLVNAPWIF-QPFWKIIKPFLDPKTASKVKFVEP--KDDLSEYFDESQLPSLFGGKL 243 (324)
T ss_pred -cHHHHHHHHHHHHhChHHhhhhhhcCChHHH-HHHHHHhhhccChhhhceeEEecC--hhHHHhhCCccccchhhCCCc
Confidence 6888999999999999999999999999999 999999999999999999999975 356999999999999999965
Q ss_pred CC
Q 007116 315 TC 316 (617)
Q Consensus 315 ~~ 316 (617)
..
T Consensus 244 ~~ 245 (324)
T KOG1470|consen 244 LF 245 (324)
T ss_pred cc
Confidence 54
No 3
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.96 E-value=7.1e-30 Score=240.82 Aligned_cols=156 Identities=31% Similarity=0.494 Sum_probs=130.6
Q ss_pred HHhhcccccccCCCCCCcEEEEecCCCCcccccccccHHHHHHHHHHHHHHHHHhhcccchhhhcCCcCcEEEEEeCCCC
Q 007116 147 VLQYYPQGYHGVDKEGRPVYIELLGKAHPSRLMRITTVDRYLKYHVQEFERALLERFPACSVAAKRRICSTTTILDVQGL 226 (617)
Q Consensus 147 v~~~~p~~~~G~Dk~GRpV~i~rlg~~Dp~kl~~~~t~~~~ir~~v~~lE~~l~~~~p~cs~~~~~~i~g~tvIiDl~G~ 226 (617)
+.+.++++++|+|++||||+++++|++|+..+ +.+++++++++.+|.+++... ...+++|+++|+|++|+
T Consensus 3 ~~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~~----~~~~~~~~~~~~~E~~~~~~~------~~~~~~~~~~iiD~~g~ 72 (159)
T PF00650_consen 3 ILKSGPFYLHGRDKDGRPVIYIRLGRFDPKKF----SPEDVIRFFVYLLERMLKRMP------EGGQVEGIVVIIDLSGF 72 (159)
T ss_dssp HHTTSCEEEEEE-TTS-EEEEEEGTT--HHTS-----HHHHHHHHHHHHHHHHHTHH------HTSHHH-EEEEEE-TT-
T ss_pred HHCCeeEEECCCCCCcCEEEEEEcccCCCCcC----CHHHHHHHHHHHHHHHHhhhc------ccccceeEEEEEeCCCc
Confidence 45677888999999999999999999999976 789999999999999986531 13689999999999999
Q ss_pred CcCCcchHHHHHHHHHHHhcccccccccceEEEEeCChhHHHHHHHHHhhcCChhhhceeEEcCC-CchhHHHccCCCCC
Q 007116 227 GMKHFTRTAANLLAAVAKVDNCYYPETLHQMFIVNAGPGFKKMLWPAAQKFLDPKSIAKIHVLEP-KSLGKLLEVIDASQ 305 (617)
Q Consensus 227 sl~~~~~~~~~llk~i~kilq~~YPerL~~i~IINaP~~f~~~lw~lvKpFL~~ktr~KI~~~~~-~~~~~L~e~Id~s~ 305 (617)
+++++.....+.++.++++++++||+|++++||||+|++| +.+|+++++||+++|++||+++++ ++.+.|.++||+++
T Consensus 73 ~~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~-~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~ 151 (159)
T PF00650_consen 73 SLSNFDWWPISFLKKIIQLLQDHYPERLGKIYIINAPWFF-RVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQ 151 (159)
T ss_dssp -HHHHHCHHHHHHHHHHHHHHHHSTTTEEEEEEES--TTH-HHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGG
T ss_pred eEeccccchhhhhhhhhhhhcccCCccceeEEEEecChhh-hhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhH
Confidence 9999986668999999999999999999999999999999 999999999999999999999965 44479999999999
Q ss_pred CCccCCCC
Q 007116 306 LPDFLGGS 313 (617)
Q Consensus 306 LP~eyGGt 313 (617)
||.+|||+
T Consensus 152 lP~~~GG~ 159 (159)
T PF00650_consen 152 LPVEYGGT 159 (159)
T ss_dssp SBGGGTSS
T ss_pred CchhcCCC
Confidence 99999997
No 4
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.95 E-value=6.3e-28 Score=227.33 Aligned_cols=154 Identities=35% Similarity=0.526 Sum_probs=140.6
Q ss_pred HHhhcccccccCCCCCCcEEEEecCCCCcccccccccHHHHHHHHHHHHHHHHHhhcccchhhhcCCcCcEEEEEeCCCC
Q 007116 147 VLQYYPQGYHGVDKEGRPVYIELLGKAHPSRLMRITTVDRYLKYHVQEFERALLERFPACSVAAKRRICSTTTILDVQGL 226 (617)
Q Consensus 147 v~~~~p~~~~G~Dk~GRpV~i~rlg~~Dp~kl~~~~t~~~~ir~~v~~lE~~l~~~~p~cs~~~~~~i~g~tvIiDl~G~ 226 (617)
...++++++ |.|++||||+++++++++++.+ +.+++++++++.+|.++.... ...++.|+++|+|++|+
T Consensus 5 ~~~~~~~~~-g~D~~GrpV~~~~~~~~~~~~~----~~~~~~~~~~~~~e~~~~~~~------~~~~~~~~~~i~D~~~~ 73 (158)
T smart00516 5 GKAYIPGGR-GYDKDGRPVLIFRAGRFDLKSV----TLEELLRYLVYVLEKILQREK------KTGGIEGFTVIFDLKGL 73 (158)
T ss_pred HHHhcCCCC-CCCCCcCEEEEEeccccccCcC----CHHHHHHHHHHHHHHHHHHHh------cCCCeeeEEEEEECCCC
Confidence 456777777 9999999999999999998776 999999999999999887521 35678999999999999
Q ss_pred CcCCcchHHHHHHHHHHHhcccccccccceEEEEeCChhHHHHHHHHHhhcCChhhhceeEEcCCCchhHHHccCCCCCC
Q 007116 227 GMKHFTRTAANLLAAVAKVDNCYYPETLHQMFIVNAGPGFKKMLWPAAQKFLDPKSIAKIHVLEPKSLGKLLEVIDASQL 306 (617)
Q Consensus 227 sl~~~~~~~~~llk~i~kilq~~YPerL~~i~IINaP~~f~~~lw~lvKpFL~~ktr~KI~~~~~~~~~~L~e~Id~s~L 306 (617)
++++++ .+.++.++++++++||++++++||||+|+++ +++|+++++|+++++++||+++++++.+.|.++||+++|
T Consensus 74 ~~~~~~---~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~-~~~~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~i~~~~l 149 (158)
T smart00516 74 SMSNPD---LSVLRKILKILQDHYPERLGKVLIINPPWFF-RVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDPEQL 149 (158)
T ss_pred Cccccc---HHHHHHHHHHHHHHhHHHhCeEEEECCCHHH-HHHHHHHHhhcChhhhccEEEeCCCCHHHHHhhCCHhhC
Confidence 999965 6889999999999999999999999999999 999999999999999999999987667999999999999
Q ss_pred CccCCCCCC
Q 007116 307 PDFLGGSCT 315 (617)
Q Consensus 307 P~eyGGt~~ 315 (617)
|.+|||++.
T Consensus 150 P~~~GG~~~ 158 (158)
T smart00516 150 PEELGGTLD 158 (158)
T ss_pred cHhhCCCCC
Confidence 999999974
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.92 E-value=9.3e-25 Score=202.97 Aligned_cols=144 Identities=35% Similarity=0.554 Sum_probs=129.8
Q ss_pred ccCCCCCCcEEEEecCCCCcccccccccHHHHHHHHHHHHHHHHHhhcccchhhhcCCcCcEEEEEeCCCCCcCCcchHH
Q 007116 156 HGVDKEGRPVYIELLGKAHPSRLMRITTVDRYLKYHVQEFERALLERFPACSVAAKRRICSTTTILDVQGLGMKHFTRTA 235 (617)
Q Consensus 156 ~G~Dk~GRpV~i~rlg~~Dp~kl~~~~t~~~~ir~~v~~lE~~l~~~~p~cs~~~~~~i~g~tvIiDl~G~sl~~~~~~~ 235 (617)
.|+|++||||+++++++.++... .+.+++++++++.+|..+... ..+..|+++|+|++|++++++. ..
T Consensus 14 ~~~D~~gr~V~~~~~~~~~~~~~---~~~~~~~~~~~~~~e~~~~~~--------~~~~~~~~~i~D~~~~~~~~~~-~~ 81 (157)
T cd00170 14 GGRDKEGRPVLIIRAGNKDLSKS---LDSEELLRYLVYTLEKLLQED--------DEQVEGFVVIIDLKGLSLSHLL-PD 81 (157)
T ss_pred CCCCCCcCEEEEEecCCcchhhc---CCHHHHHHHHHHHHHHHHhhh--------hhcccceEEEEECCCCChhccc-hh
Confidence 45799999999999997776654 244899999999999998763 2334799999999999999997 67
Q ss_pred HHHHHHHHHhcccccccccceEEEEeCChhHHHHHHHHHhhcCChhhhceeEEcCCCchhHHHccCCCCCCCccCCCC
Q 007116 236 ANLLAAVAKVDNCYYPETLHQMFIVNAGPGFKKMLWPAAQKFLDPKSIAKIHVLEPKSLGKLLEVIDASQLPDFLGGS 313 (617)
Q Consensus 236 ~~llk~i~kilq~~YPerL~~i~IINaP~~f~~~lw~lvKpFL~~ktr~KI~~~~~~~~~~L~e~Id~s~LP~eyGGt 313 (617)
.+.++.++++++++||++++++||||+|++| +.+|+++++|+++++++||++++++ .+.|.++||+++||.+|||+
T Consensus 82 ~~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~-~~~~~~~~~~l~~~~~~ki~~~~~~-~~~L~~~i~~~~Lp~~~GG~ 157 (157)
T cd00170 82 PSLLKKILKILQDNYPERLKAVYIINPPWFF-KVLWKIVKPFLSEKTRKKIVFLGSD-KEELLKYIDKEQLPEEYGGT 157 (157)
T ss_pred HHHHHHHHHHHHHhChHhhCeEEEECCCHhH-HHHHHHHHHhcCHhhhhhEEEecCC-HHHHHhhCChhhCcHhhCCC
Confidence 8999999999999999999999999999999 9999999999999999999999865 78999999999999999996
No 6
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.36 E-value=4.9e-13 Score=125.80 Aligned_cols=138 Identities=25% Similarity=0.344 Sum_probs=93.3
Q ss_pred ccCCCCCCcEEEEecCCCCcccccccccHHHHHHHHHHHHHHHHHhhcccchhhhcCCcCcEEEEEeCCCCCcCCcchHH
Q 007116 156 HGVDKEGRPVYIELLGKAHPSRLMRITTVDRYLKYHVQEFERALLERFPACSVAAKRRICSTTTILDVQGLGMKHFTRTA 235 (617)
Q Consensus 156 ~G~Dk~GRpV~i~rlg~~Dp~kl~~~~t~~~~ir~~v~~lE~~l~~~~p~cs~~~~~~i~g~tvIiDl~G~sl~~~~~~~ 235 (617)
.|+|++||||+++....+ +... +.+.++.|++..+... -...++++|+|++|.+..+-. .
T Consensus 7 gG~d~~g~pV~~~~~~~~-~~~~----~~~~ll~yl~~~l~~~-------------~~~~~f~vVid~~~~~~~~~~--~ 66 (149)
T PF13716_consen 7 GGRDREGRPVVVFIASRL-PSSD----DLERLLLYLLSTLSEE-------------VVDKPFSVVIDHTGFSRSSEP--S 66 (149)
T ss_dssp EEEBTTS-EEEEEEGGG--C-TT----HHHHHHHHHHHHH-TT-------------TTTS-EEEEEE-TT--GGG-----
T ss_pred cccCCCcCEEEEEECCcC-cchh----hHHHHHHHHHHhhhHH-------------hcCCCEEEEEEcCCCccccCC--c
Confidence 489999999999998777 4332 5666666665554211 123469999999999875543 3
Q ss_pred HHHHHHHHHhcccccccccceEEEEeCChhHHHHHH-HHHhhcCChhh-hceeEEcCCCchhHHHccCCCCCCCccCCCC
Q 007116 236 ANLLAAVAKVDNCYYPETLHQMFIVNAGPGFKKMLW-PAAQKFLDPKS-IAKIHVLEPKSLGKLLEVIDASQLPDFLGGS 313 (617)
Q Consensus 236 ~~llk~i~kilq~~YPerL~~i~IINaP~~f~~~lw-~lvKpFL~~kt-r~KI~~~~~~~~~~L~e~Id~s~LP~eyGGt 313 (617)
...++.+.+.+...|+..++++||||+++++ +.++ .+.+++++.+. ..||.++.+ .++|.++||+++||..+||+
T Consensus 67 ~~~l~~~~~~l~~~~~~nl~~vyiv~p~~~~-k~~~~~~~~~~~~~~~~~~kv~~~~s--l~~L~~~i~~~qL~~~lp~~ 143 (149)
T PF13716_consen 67 LSWLKQLYKLLPRKYKKNLKKVYIVHPNWFL-KKILATLLRPFVSSKFWKKKVVYVSS--LSELSKHIDPSQLPESLPGV 143 (149)
T ss_dssp HHHHHHTTTSS-HHHHHTEEEEEEES--HHH-HHHHHHTTTTGGGGTT--TTEEEESS--TCGGGGTSGGGG------HH
T ss_pred hHHHHHHHHHHHHHHhhceEEEEEECCCHHH-HHHHHHHhcccccccccceEEEEECC--HHHHHhhCCHHHhcccCCCE
Confidence 6778899999999999999999999999999 7777 66677789998 899999864 79999999999999999998
Q ss_pred CCC
Q 007116 314 CTC 316 (617)
Q Consensus 314 ~~~ 316 (617)
.+.
T Consensus 144 ~~~ 146 (149)
T PF13716_consen 144 LQY 146 (149)
T ss_dssp H--
T ss_pred Eec
Confidence 764
No 7
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=98.64 E-value=3.6e-08 Score=77.63 Aligned_cols=47 Identities=36% Similarity=0.600 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHcC--------CCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 007116 76 ESAVLELRQKLLER--------DLLPPRQDDYHTLLRFLKAREFNIERTIQMWEEM 123 (617)
Q Consensus 76 ~~aL~eLR~~L~~~--------~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~~~ 123 (617)
+++|++||+.|... +..+..++| .+||||||||+|||++|.+||.+|
T Consensus 1 k~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d-~~llRFLRARkf~v~~A~~mL~~t 55 (55)
T PF03765_consen 1 KQKLKQLREHLSELDEKAPGLWDDEKEDHDD-NFLLRFLRARKFDVEKAFKMLKKT 55 (55)
T ss_dssp HHHHHHHHHHHHH--GGGTHHHTTHTSS-SH-HHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccchhcccccccCCCCH-HHHHHHHHHccCCHHHHHHHHHhC
Confidence 46899999999873 334555666 699999999999999999999875
No 8
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=98.00 E-value=2e-05 Score=84.28 Aligned_cols=126 Identities=20% Similarity=0.267 Sum_probs=98.5
Q ss_pred CCCCCCcEEEEecCCCCcccccccccHHHHHHHHHHHHHHHHHhhcccchhhhcCCcCcEEEEEeCCCCCcCCcchHHHH
Q 007116 158 VDKEGRPVYIELLGKAHPSRLMRITTVDRYLKYHVQEFERALLERFPACSVAAKRRICSTTTILDVQGLGMKHFTRTAAN 237 (617)
Q Consensus 158 ~Dk~GRpV~i~rlg~~Dp~kl~~~~t~~~~ir~~v~~lE~~l~~~~p~cs~~~~~~i~g~tvIiDl~G~sl~~~~~~~~~ 237 (617)
.|+.||+|+++.+-++-+.+-. .-..++++.++.++..++. -++.++=-.|+...+... +.
T Consensus 89 ~D~~gr~iivv~a~rlp~~~el---d~~~li~~~v~~id~~Ve~--------------DYt~vYfh~gl~s~nkp~--l~ 149 (467)
T KOG4406|consen 89 KDKQGRKIIVVYACRLPSSSEL---DDIRLISYLVYTIDKYVEN--------------DYTLVYFHHGLPSDNKPY--LQ 149 (467)
T ss_pred ccccCCeeEEEEEecCCchhhh---hhHHHHHHHHHHHHHHHhc--------------cceeeehhcCCcccccch--HH
Confidence 6999999999998887765421 2233899999999988764 166777777777666542 44
Q ss_pred HHHHHHHhcccccccccceEEEEeCChhHHHHHHHHHhhcCChhhhceeEEcCCCchhHHHccCCCCC
Q 007116 238 LLAAVAKVDNCYYPETLHQMFIVNAGPGFKKMLWPAAQKFLDPKSIAKIHVLEPKSLGKLLEVIDASQ 305 (617)
Q Consensus 238 llk~i~kilq~~YPerL~~i~IINaP~~f~~~lw~lvKpFL~~ktr~KI~~~~~~~~~~L~e~Id~s~ 305 (617)
++....+-+-.+|--.++.+|+|.+-|+. +++|+++|||++.|...||+-+. +.++|.++|.-+.
T Consensus 150 ~l~~aYke~Dr~~~KNlKalYvvHptwfi-kvi~n~~kplIS~KF~rKi~Y~n--~lseL~~~l~l~r 214 (467)
T KOG4406|consen 150 LLFDAYKELDRNFKKNLKALYVVHPTWFI-KVIWNLFKPLISLKFTRKIIYFN--SLSELFEALKLNR 214 (467)
T ss_pred HHHHHHHHHHHHHhhhhhheEEecHHHHH-HHHHHHHhhhcchhhhceeEEee--hHHHHHHhhhhhh
Confidence 55444555556788899999999999999 99999999999999999999984 5899999886433
No 9
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=87.10 E-value=0.79 Score=37.62 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=23.6
Q ss_pred CccccchhhhhHHHHHHHHHHHHHHHhc
Q 007116 526 VEAVNEEDLVVPCIERLQKLEKAYEELR 553 (617)
Q Consensus 526 ~~~~~~~~~~~~~~kRl~eLE~k~~~L~ 553 (617)
|...++.|+|..+.+||.++|+||+-..
T Consensus 8 P~v~v~~~dfne~~kRLdeieekvef~~ 35 (75)
T COG4064 8 PKVVVDPDDFNEIHKRLDEIEEKVEFVN 35 (75)
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHhhH
Confidence 4445889999999999999999998643
No 10
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=85.03 E-value=0.88 Score=37.40 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=23.3
Q ss_pred CccccchhhhhHHHHHHHHHHHHHHHhc
Q 007116 526 VEAVNEEDLVVPCIERLQKLEKAYEELR 553 (617)
Q Consensus 526 ~~~~~~~~~~~~~~kRl~eLE~k~~~L~ 553 (617)
|...++.++|..+++||.++|+||+.-+
T Consensus 5 P~v~v~~~d~~~i~~rLd~iEeKVEf~~ 32 (70)
T TIGR01149 5 PAVFVEPDEFNEVMKRLDEIEEKVEFVN 32 (70)
T ss_pred CeeecCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444888999999999999999998643
No 11
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=84.28 E-value=0.97 Score=38.00 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=23.7
Q ss_pred CccccchhhhhHHHHHHHHHHHHHHHhc
Q 007116 526 VEAVNEEDLVVPCIERLQKLEKAYEELR 553 (617)
Q Consensus 526 ~~~~~~~~~~~~~~kRl~eLE~k~~~L~ 553 (617)
|...++.++|..+++||.++|+||+.-+
T Consensus 8 P~viv~~~d~~~i~~rLD~iEeKVEftn 35 (77)
T PRK01026 8 PQVVVDPKDFKEIQKRLDEIEEKVEFTN 35 (77)
T ss_pred CeeecCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445899999999999999999998643
No 12
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=82.09 E-value=1.3 Score=36.53 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=23.2
Q ss_pred CccccchhhhhHHHHHHHHHHHHHHHhc
Q 007116 526 VEAVNEEDLVVPCIERLQKLEKAYEELR 553 (617)
Q Consensus 526 ~~~~~~~~~~~~~~kRl~eLE~k~~~L~ 553 (617)
|...++.++|..+++||.++|+||+.-+
T Consensus 5 P~viv~~~~~~~i~~rLd~iEeKvEf~~ 32 (70)
T PF04210_consen 5 PQVIVDPDDFNEIMKRLDEIEEKVEFTN 32 (70)
T ss_pred CeeeeCHHHHHHHHHHHHHHHHHHHhHH
Confidence 3344789999999999999999998543
No 13
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=59.29 E-value=79 Score=28.30 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=14.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcCCCCCCchhHH
Q 007116 532 EDLVVPCIERLQKLEKAYEELRHKPAAIPLEKE 564 (617)
Q Consensus 532 ~~~~~~~~kRl~eLE~k~~~L~~KP~~mP~EKE 564 (617)
.+++..+-+|+++.+..++.|..+=..||--++
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~d 66 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDD 66 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 334455544444444444444444444554443
No 14
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=58.61 E-value=33 Score=25.39 Aligned_cols=36 Identities=11% Similarity=0.338 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 007116 77 SAVLELRQKLLERDLLPPRQDDYHTLLRFLKAREFNIERTIQMWE 121 (617)
Q Consensus 77 ~aL~eLR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~ 121 (617)
+.|.+|...... ++ .....||.+++||++.|...+-
T Consensus 2 e~i~~F~~iTg~--------~~-~~A~~~L~~~~wdle~Av~~y~ 37 (43)
T PF14555_consen 2 EKIAQFMSITGA--------DE-DVAIQYLEANNWDLEAAVNAYF 37 (43)
T ss_dssp HHHHHHHHHH-S--------SH-HHHHHHHHHTTT-HHHHHHHHH
T ss_pred HHHHHHHHHHCc--------CH-HHHHHHHHHcCCCHHHHHHHHH
Confidence 567777776621 22 5889999999999999998753
No 15
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=50.38 E-value=39 Score=24.76 Aligned_cols=38 Identities=24% Similarity=0.278 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 007116 77 SAVLELRQKLLERDLLPPRQDDYHTLLRFLKAREFNIERTIQMWEE 122 (617)
Q Consensus 77 ~aL~eLR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~~ 122 (617)
+.|+.|++.. |.+ +. ..+..-|.++++|++.|..+|-.
T Consensus 3 ~~v~~L~~mF---P~~----~~-~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 3 EMVQQLQEMF---PDL----DR-EVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHHS---SSS-----H-HHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHC---CCC----CH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 4566777665 332 33 58999999999999999998754
No 16
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=47.38 E-value=44 Score=24.56 Aligned_cols=38 Identities=29% Similarity=0.355 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 007116 77 SAVLELRQKLLERDLLPPRQDDYHTLLRFLKAREFNIERTIQMWEE 122 (617)
Q Consensus 77 ~aL~eLR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~~ 122 (617)
+.+++|++.. |.+ ++ ..+.+-|+++++|++.|...|..
T Consensus 4 ~~v~~L~~mF---P~l----~~-~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 4 EALHDLKDMF---PNL----DE-EVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred HHHHHHHHHC---CCC----CH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 4567777665 332 33 47889999999999999988753
No 17
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=46.82 E-value=63 Score=31.70 Aligned_cols=73 Identities=21% Similarity=0.323 Sum_probs=39.8
Q ss_pred hhhhhHHHHHHHHHHHHHH-------H----hcCCCCCCchhHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007116 532 EDLVVPCIERLQKLEKAYE-------E----LRHKPAAIPLEKEQMLVESLQRIKSVESDLEKTKKVLHATVVKQHEIAE 600 (617)
Q Consensus 532 ~~~~~~~~kRl~eLE~k~~-------~----L~~KP~~mP~EKEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~El~~ 600 (617)
.+++..+-.|+-.||+||+ . |+..--.=|.+|++ ++.-=.||.+||.-+.+-=.+|+-----|.||-+
T Consensus 71 r~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~-v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~~ 149 (189)
T TIGR02132 71 KEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKD-VTKLKQDIKSLDKKLDKILELLEGQQKTQDELKE 149 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhH-HHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHH
Confidence 3445555555555544443 3 33223356777776 3556678888888777666666633333444444
Q ss_pred HHHHH
Q 007116 601 ALENL 605 (617)
Q Consensus 601 yie~~ 605 (617)
.|.++
T Consensus 150 ~~~~~ 154 (189)
T TIGR02132 150 TIQKQ 154 (189)
T ss_pred HHHHH
Confidence 44443
No 18
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=46.72 E-value=91 Score=31.65 Aligned_cols=73 Identities=19% Similarity=0.170 Sum_probs=49.5
Q ss_pred hhhhHHHHHHHHHHHH-----HHHhcCCCCCCchhHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007116 533 DLVVPCIERLQKLEKA-----YEELRHKPAAIPLEKEQMLVESLQRIKSVESDLEKTKKVLHATVVKQHEIAEALENL 605 (617)
Q Consensus 533 ~~~~~~~kRl~eLE~k-----~~~L~~KP~~mP~EKEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~El~~yie~~ 605 (617)
+.++..+.||..|++- -+....++.+=+-.+|+=........+-||.||+++++.|+.+-.+=.+|.-+.|.+
T Consensus 114 ~R~~~ll~~l~~l~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~ 191 (216)
T KOG1962|consen 114 RRLHTLLRELATLRANEKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGL 191 (216)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4567788888888872 233333334444445666667778889999999999999987655555555555543
No 19
>PHA01750 hypothetical protein
Probab=46.06 E-value=88 Score=25.72 Aligned_cols=42 Identities=26% Similarity=0.503 Sum_probs=33.6
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007116 565 QMLVESLQRIKSVESDLEKTKKVLHATVVKQHEIAEALENLRQS 608 (617)
Q Consensus 565 e~L~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~El~~yie~~k~~ 608 (617)
++|.+|+.-| +-+||.--++-++++-.||.+|-+-++..|++
T Consensus 30 q~lkdAvkeI--V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 30 QALKDAVKEI--VNSELDNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 5777887754 56788888888999999999998888777654
No 20
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=41.69 E-value=1.3e+02 Score=33.92 Aligned_cols=73 Identities=19% Similarity=0.294 Sum_probs=51.3
Q ss_pred cchhhhhHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHH--HHH-----HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007116 530 NEEDLVVPCIERLQKLEKAYEELRHKPAAIPLEKEQMLV--ESL-----QRIKSVESDLEKTKKVLHATVVKQHEIAEAL 602 (617)
Q Consensus 530 ~~~~~~~~~~kRl~eLE~k~~~L~~KP~~mP~EKEe~L~--aa~-----~Ri~~lE~eL~~TKKaL~~tl~kQ~El~~yi 602 (617)
+..|-+..++-++.+|++++..|...-...=.|.|+|-+ .++ .+|.+-..||......|.+...+...++.-+
T Consensus 56 TP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 56 TPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999998876666677777644 111 2344555677777777766655555555444
No 21
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=40.46 E-value=1.6e+02 Score=29.03 Aligned_cols=63 Identities=22% Similarity=0.241 Sum_probs=55.1
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHHHhHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q 007116 546 EKAYEELRHKPAAIPLEKEQMLVESLQRIKSVESDLEKTKKVLHA---TVVKQHEIAEALENLRQS 608 (617)
Q Consensus 546 E~k~~~L~~KP~~mP~EKEe~L~aa~~Ri~~lE~eL~~TKKaL~~---tl~kQ~El~~yie~~k~~ 608 (617)
=+-|+...+||.--+.++..++++...--+-+|.-|.++++.|.+ .+.+=.||+.++.+++.+
T Consensus 21 iedV~s~~~qp~~~~~~~l~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~ 86 (187)
T KOG3313|consen 21 IEDVESYISQPELESLEALKKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQTLIAKKDE 86 (187)
T ss_pred HHHHHHHHcCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhCccc
Confidence 356788899999999999999999999999999999999999986 456778888888887644
No 22
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=40.17 E-value=1.1e+02 Score=36.06 Aligned_cols=65 Identities=17% Similarity=0.341 Sum_probs=43.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHH
Q 007116 532 EDLVVPCIERLQKLEKAYEELRHKPAAIPLEKEQMLVESLQRIKSVESDLEKTKKVLHATVVKQHEI 598 (617)
Q Consensus 532 ~~~~~~~~kRl~eLE~k~~~L~~KP~~mP~EKEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~El 598 (617)
...+..+.+++.+||+..+.|..|=...|.+ +-+..-..+++.++.+|.+.+..+.....+-+++
T Consensus 390 ~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~--e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~ 454 (650)
T TIGR03185 390 QDAKSQLLKELRELEEELAEVDKKISTIPSE--EQIAQLLEELGEAQNELFRSEAEIEELLRQLETL 454 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568889999999999999999998888864 2445555555555555555555544443333333
No 23
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=37.87 E-value=87 Score=39.09 Aligned_cols=60 Identities=35% Similarity=0.507 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCCCCchhHHHH---HHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007116 534 LVVPCIERLQKLEKAYEELRHKPAAIPLEKEQM---LVESLQRIKSVESDLEKTKKVLHATVVKQHEIAEALENLR 606 (617)
Q Consensus 534 ~~~~~~kRl~eLE~k~~~L~~KP~~mP~EKEe~---L~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~El~~yie~~k 606 (617)
....-++.++.|++++..++ |+|+| |+..+.+.+..|++|..+.+||. |.++-++-++..
T Consensus 442 ~l~~~~~~~~~~~~~~~~~~--------~~~~~~keL~e~i~~lk~~~~el~~~q~~l~-----q~~~ke~~ek~~ 504 (1317)
T KOG0612|consen 442 SLVNEMQEKEKLDEKCQAVA--------ELEEMDKELEETIEKLKSEESELQREQKALL-----QHEQKEVEEKLS 504 (1317)
T ss_pred chhhHHHHhhhHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhHHHHHHH
Confidence 36677899999999999998 77777 89999999999999999777763 444444444433
No 24
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=35.51 E-value=97 Score=24.68 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhcCC
Q 007116 541 RLQKLEKAYEELRHK 555 (617)
Q Consensus 541 Rl~eLE~k~~~L~~K 555 (617)
|+.+||.++..|.+.
T Consensus 1 Ri~elEn~~~~~~~~ 15 (55)
T PF05377_consen 1 RIDELENELPRIESS 15 (55)
T ss_pred CHHHHHHHHHHHHHH
Confidence 445555555554443
No 25
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=33.98 E-value=1.3e+02 Score=30.10 Aligned_cols=78 Identities=19% Similarity=0.265 Sum_probs=55.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcCCCCCCc----hhHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007116 532 EDLVVPCIERLQKLEKAYEELRHKPAAIP----LEKEQMLVESLQRIKSVESDLEKTKKVLHATVVKQHEIAEALENLRQ 607 (617)
Q Consensus 532 ~~~~~~~~kRl~eLE~k~~~L~~KP~~mP----~EKEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~El~~yie~~k~ 607 (617)
+..+....+-|.+||++...|-.+=-+.. .+=......|+.-|+.=|..|.+-|++|.++--....+-.||++.+.
T Consensus 31 Ek~~~~~~k~L~~lE~~~q~lY~~ii~~~~~d~~~v~~~~~~a~~nv~~R~k~l~~Ek~ai~~a~~e~~~~~~~i~ki~d 110 (204)
T PF10368_consen 31 EKPFKEQQKKLNELEKKEQELYEQIIQLGKDDNDEVKKLSDEALKNVDEREKELKKEKEAIEKAKEEFKKAKKYIDKIED 110 (204)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTTGG---G-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44678889999999999999988863333 45567888999999999999999999999999888888899887775
Q ss_pred hh
Q 007116 608 SK 609 (617)
Q Consensus 608 ~k 609 (617)
.+
T Consensus 111 ~~ 112 (204)
T PF10368_consen 111 EK 112 (204)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 26
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=33.88 E-value=2.7e+02 Score=29.61 Aligned_cols=64 Identities=25% Similarity=0.431 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007116 535 VVPCIERLQKLEKAYEELRHKPAAIPLEKEQMLVESLQRIKSVESDLEKTKKVLHATVVKQHEIAEALENLRQ 607 (617)
Q Consensus 535 ~~~~~kRl~eLE~k~~~L~~KP~~mP~EKEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~El~~yie~~k~ 607 (617)
+.+.=+.+++||.+..+. ..|+++|.=| +.+|.-|+.+|+..+|++....--| ||.+-|+..+.
T Consensus 109 ~~~ler~i~~Le~~~~T~-----~L~~e~E~~l---vq~I~~L~k~le~~~k~~e~~~~~~-el~aei~~lk~ 172 (294)
T COG1340 109 IKSLEREIERLEKKQQTS-----VLTPEEEREL---VQKIKELRKELEDAKKALEENEKLK-ELKAEIDELKK 172 (294)
T ss_pred HHHHHHHHHHHHHHHHhc-----CCChHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 466678899999998874 4788899866 5677779999999999999888775 45555655553
No 27
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=32.95 E-value=2.3e+02 Score=33.64 Aligned_cols=75 Identities=21% Similarity=0.279 Sum_probs=44.9
Q ss_pred chhhhhHHHHHHHHHHHHHHHhcCCCCCCchhHHHH----HHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007116 531 EEDLVVPCIERLQKLEKAYEELRHKPAAIPLEKEQM----LVESLQRIKSVESDLEKTKKVLHATVVKQHEIAEALENL 605 (617)
Q Consensus 531 ~~~~~~~~~kRl~eLE~k~~~L~~KP~~mP~EKEe~----L~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~El~~yie~~ 605 (617)
+.++..+-|+|.-.+|+.=.+=+-.=+.--.|.+++ +++|+.++..|+++|+.+||-|.++.---+-|...+|++
T Consensus 171 ~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~L 249 (916)
T KOG0249|consen 171 QLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDL 249 (916)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 344555666666665554332211111111133332 579999999999999999999988765545555555544
No 28
>PRK10884 SH3 domain-containing protein; Provisional
Probab=30.60 E-value=1.7e+02 Score=29.55 Aligned_cols=70 Identities=14% Similarity=0.139 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007116 538 CIERLQKLEKAYEELRHKPAAIPLEKEQMLVESLQRIKSVESDLEKTKKVLHATVVKQHEIAEALENLRQ 607 (617)
Q Consensus 538 ~~kRl~eLE~k~~~L~~KP~~mP~EKEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~El~~yie~~k~ 607 (617)
+=+.|++|+++.+.+...-.+-=.|..+-+.++=.-|..|+.|...-++-|..+-.+=.+|-+-++.+++
T Consensus 98 le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 98 LENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444332222233344444555555556666666666665555554555555555554
No 29
>PHA00687 hypothetical protein
Probab=30.25 E-value=1.1e+02 Score=23.33 Aligned_cols=30 Identities=30% Similarity=0.594 Sum_probs=22.9
Q ss_pred CCCchhHHHHHHHH----------HHhHHhhHHHHHHHHH
Q 007116 557 AAIPLEKEQMLVES----------LQRIKSVESDLEKTKK 586 (617)
Q Consensus 557 ~~mP~EKEe~L~aa----------~~Ri~~lE~eL~~TKK 586 (617)
...|+|--++|+.| +.||+++|.--+..|+
T Consensus 9 ttlppeamrllqqaaqtpitradplarvkaiekatervkr 48 (56)
T PHA00687 9 TTLPPEAMRLLQQAAQTPITRADPLARVKAIEKATERVKR 48 (56)
T ss_pred ccCCHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHH
Confidence 35789999999876 6789999876666554
No 30
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=30.10 E-value=1.6e+02 Score=28.94 Aligned_cols=113 Identities=19% Similarity=0.233 Sum_probs=67.3
Q ss_pred ccccccCCchhhHHHHHHHHHHHHHHHHHhccc-c---ccccccCCCCccccccccCCCCCCccccchhhhh-HHHHHHH
Q 007116 469 VKEKFEGGNIQGVARMLLSFMVRIFAIFGSLQL-I---WRRQNDIHPSNLLEENTNSHLPAVEAVNEEDLVV-PCIERLQ 543 (617)
Q Consensus 469 ~~~~~~~~~~~~i~~~l~~~~~~l~t~~r~~~~-~---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~kRl~ 543 (617)
+++++......++....+-++.++..++..+.. . +.....+.++ +.+.+.++.+. .+-+.|.
T Consensus 43 LkGka~dsiK~y~~~vh~pll~~~~~~~~~~~~~l~~~~~~~~~vd~~-------------~~a~i~e~~L~~el~~~l~ 109 (204)
T PF04740_consen 43 LKGKAYDSIKNYFSEVHIPLLQGLILLLEEYQEALKFIKDFQSEVDSS-------------SNAIIDEDFLESELKKKLN 109 (204)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccc-------------ccccccHHHHHHHHHHHHH
Confidence 456666666677777788888888777775554 3 2222212111 11226666666 6678888
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 007116 544 KLEKAYEELRHKPAAIPLEKEQMLVESLQRIKSVESDLEKTKKVLHATVVK 594 (617)
Q Consensus 544 eLE~k~~~L~~KP~~mP~EKEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~k 594 (617)
++.+.+..+...-..+-.+=.+++.-..-..+.+...+...|+-|.+++.|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~vsdiv~~~~~~~~~~~~~~~~~~~~l~~~lek 160 (204)
T PF04740_consen 110 QLKEQIEDLQDEINSILSSVSDIVSLPKPSSSSFIDSLEKAKKKLQETLEK 160 (204)
T ss_pred HHHHHHHHHHHHHhhhccchHHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877766544444444443333333456666666777776666665
No 31
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=29.55 E-value=2.6e+02 Score=32.08 Aligned_cols=54 Identities=30% Similarity=0.351 Sum_probs=39.0
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhHHhhHHHHHHHHHH--------------HHHHHHHHHHH
Q 007116 534 LVVPCIERLQKLEKAYEELRHKPAAIPLEKEQMLVESLQRIKSVESDLEKTKKV--------------LHATVVKQHEI 598 (617)
Q Consensus 534 ~~~~~~kRl~eLE~k~~~L~~KP~~mP~EKEe~L~aa~~Ri~~lE~eL~~TKKa--------------L~~tl~kQ~El 598 (617)
+...+.+||...|+.-.. .++=|..+-.+|..||.||+.|++- |.+.|.+|.|=
T Consensus 442 Ec~aL~~rL~~aE~ek~~-----------l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~ee 509 (518)
T PF10212_consen 442 ECRALQKRLESAEKEKES-----------LEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREE 509 (518)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666676666664444 3445889999999999999999984 55666666653
No 32
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=29.02 E-value=2.5e+02 Score=30.07 Aligned_cols=73 Identities=25% Similarity=0.279 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007116 534 LVVPCIERLQKLEKAYEELRHKPAAIPLEKEQMLVESLQRIKSVESDLEKTKKVLHATVVKQHEIAEALENLR 606 (617)
Q Consensus 534 ~~~~~~kRl~eLE~k~~~L~~KP~~mP~EKEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~El~~yie~~k 606 (617)
.+-.+..|.+.|++.+..|...+.++=..--+-|+++=.++.+++.++++-|+-|.+.=.+=.++-+-|+..+
T Consensus 178 ~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~ 250 (325)
T PF08317_consen 178 LLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELE 250 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667778888888888888776552222445556666666666666655555544433344444444433
No 33
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=28.91 E-value=1.3e+02 Score=28.36 Aligned_cols=67 Identities=25% Similarity=0.291 Sum_probs=46.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcCCCCCC---chhHHHHHH---HHHHhHHhhHHHHHHHHHHHHHHHHHHHHH
Q 007116 532 EDLVVPCIERLQKLEKAYEELRHKPAAI---PLEKEQMLV---ESLQRIKSVESDLEKTKKVLHATVVKQHEI 598 (617)
Q Consensus 532 ~~~~~~~~kRl~eLE~k~~~L~~KP~~m---P~EKEe~L~---aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~El 598 (617)
..+|.++=+|++.||.-|+.+..+=.+. ..+.+.... +.-+||..||.||+.+-+.|-+|.-|=.+.
T Consensus 34 E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~ 106 (143)
T PF12718_consen 34 EQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREA 106 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788888888887777776553322 223333222 355789999999999999999988775554
No 34
>PF13080 DUF3926: Protein of unknown function (DUF3926)
Probab=28.36 E-value=56 Score=24.45 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007116 582 EKTKKVLHATVVKQHEIAEALENLRQ 607 (617)
Q Consensus 582 ~~TKKaL~~tl~kQ~El~~yie~~k~ 607 (617)
+.+|++|+ +-|+||.+|...++.
T Consensus 13 QsAkqmln---ILQEELssy~~E~~~ 35 (44)
T PF13080_consen 13 QSAKQMLN---ILQEELSSYPQEQPQ 35 (44)
T ss_pred HHHHHHHH---HHHHHHHhchhhccC
Confidence 46788886 679999999977663
No 35
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=27.74 E-value=3.9e+02 Score=29.81 Aligned_cols=89 Identities=21% Similarity=0.264 Sum_probs=66.3
Q ss_pred CCCCcEEEEecCCCCcccccccccHHHHHHHHHHHHHHHHHhhcccchhhhcCCcCcEEEEEeCCCCCcCCcch------
Q 007116 160 KEGRPVYIELLGKAHPSRLMRITTVDRYLKYHVQEFERALLERFPACSVAAKRRICSTTTILDVQGLGMKHFTR------ 233 (617)
Q Consensus 160 k~GRpV~i~rlg~~Dp~kl~~~~t~~~~ir~~v~~lE~~l~~~~p~cs~~~~~~i~g~tvIiDl~G~sl~~~~~------ 233 (617)
....|++++-+|-..- +.+.|+|+++.... + . .--++|+.-.|++-..+..
T Consensus 122 ~~~~P~vvilpGltg~-------S~~~YVr~lv~~a~---~----------~---G~r~VVfN~RG~~g~~LtTpr~f~a 178 (409)
T KOG1838|consen 122 DGTDPIVVILPGLTGG-------SHESYVRHLVHEAQ---R----------K---GYRVVVFNHRGLGGSKLTTPRLFTA 178 (409)
T ss_pred CCCCcEEEEecCCCCC-------ChhHHHHHHHHHHH---h----------C---CcEEEEECCCCCCCCccCCCceeec
Confidence 3556999999986543 56789998875432 1 1 2346899999976655532
Q ss_pred HHHHHHHHHHHhcccccccccceEEEEeCChhHHHHHHHHH
Q 007116 234 TAANLLAAVAKVDNCYYPETLHQMFIVNAGPGFKKMLWPAA 274 (617)
Q Consensus 234 ~~~~llk~i~kilq~~YPerL~~i~IINaP~~f~~~lw~lv 274 (617)
.....++.+++.+...||.+ +++.+--+.+- .++||-+
T Consensus 179 g~t~Dl~~~v~~i~~~~P~a--~l~avG~S~Gg-~iL~nYL 216 (409)
T KOG1838|consen 179 GWTEDLREVVNHIKKRYPQA--PLFAVGFSMGG-NILTNYL 216 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCC--ceEEEEecchH-HHHHHHh
Confidence 23567899999999999998 89999999999 8888843
No 36
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=27.21 E-value=2.1e+02 Score=34.29 Aligned_cols=64 Identities=23% Similarity=0.344 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCCCCCCchh---HHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Q 007116 543 QKLEKAYEELRHKPAAIPLE---KEQMLVESLQRIKSVESDLEKTKKVLHATVVKQ-HEIAEALENLR 606 (617)
Q Consensus 543 ~eLE~k~~~L~~KP~~mP~E---KEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ-~El~~yie~~k 606 (617)
+++++-+..++-..-.+|.. -++++++--.|++.++.+++.|++.|.+.+.+- .+|.++-+..+
T Consensus 204 ~kv~~il~~~~f~~~~~p~~~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~ 271 (759)
T PF01496_consen 204 EKVKKILRSFGFERYDLPEDEGTPEEAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYLR 271 (759)
T ss_dssp HHHHHHHHTTT--B----GGGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCceecCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888888888764 468999999999999999999999999776553 34554444433
No 37
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=25.78 E-value=2.3e+02 Score=29.22 Aligned_cols=70 Identities=20% Similarity=0.258 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCchhH-----HHHHHHHHHhHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 007116 535 VVPCIERLQKLEKAYEELRHKPAAIPLEK-----EQMLVESLQRIKSVESDLEKTK-------KVLHATVVKQHEIAEAL 602 (617)
Q Consensus 535 ~~~~~kRl~eLE~k~~~L~~KP~~mP~EK-----Ee~L~aa~~Ri~~lE~eL~~TK-------KaL~~tl~kQ~El~~yi 602 (617)
-..|++.|+||... ....++.+-|.| ..=+.+.+.|+..||.-|..-. ..+++...+..+|.+-|
T Consensus 182 r~~~~~~l~el~~r---~~~giP~LDPi~DmkI~d~~~~e~~~k~~~Le~rl~~~~~~~~~~~~~~~~~~~~k~~l~~~i 258 (268)
T PF13234_consen 182 RKQVLKSLQELLKR---FPDGIPLLDPIKDMKIKDPEFVELVKKIEALEKRLSSHPLHKCPDFEEHYALYHEKAELQEEI 258 (268)
T ss_dssp HHHHHHHHHHHHHH---SSS--TCHHCHHHH----HHHHHHHHHHHHHHHHHHHSCHCCSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCCCCccChHHhCCCCcHHHHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 45677777777666 234455555533 4456667777777777776654 45677777777777777
Q ss_pred HHHhh
Q 007116 603 ENLRQ 607 (617)
Q Consensus 603 e~~k~ 607 (617)
+..|.
T Consensus 259 ~~Lk~ 263 (268)
T PF13234_consen 259 KALKR 263 (268)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76664
No 38
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=25.72 E-value=4.3e+02 Score=27.33 Aligned_cols=55 Identities=11% Similarity=0.120 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhHHhhHHHHHHHHHHHHHHH
Q 007116 536 VPCIERLQKLEKAYEELRHKPAAIPLEKEQMLVESLQRIKSVESDLEKTKKVLHATV 592 (617)
Q Consensus 536 ~~~~kRl~eLE~k~~~L~~KP~~mP~EKEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl 592 (617)
.+-=+.++-+|..+..-+. ..+=+..-||||.|..||..-|.+-......-....
T Consensus 94 ~aAKe~v~laEq~l~~~~~--~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~ 148 (239)
T PF05276_consen 94 AAAKEMVALAEQSLMSDSN--WTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRA 148 (239)
T ss_pred HHHHHHHHHHHHHHhcCCc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444667788888777544 568899999999999999988888777766544443
No 39
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=25.70 E-value=2.9e+02 Score=30.89 Aligned_cols=56 Identities=27% Similarity=0.411 Sum_probs=38.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhcC--CCCCCchhHHHHHHHHHHhHHhhHHHHHHHHHHH
Q 007116 533 DLVVPCIERLQKLEKAYEELRH--KPAAIPLEKEQMLVESLQRIKSVESDLEKTKKVL 588 (617)
Q Consensus 533 ~~~~~~~kRl~eLE~k~~~L~~--KP~~mP~EKEe~L~aa~~Ri~~lE~eL~~TKKaL 588 (617)
+++..+-++|.+|+..+..|.. ++..+|+++.++++......+.|..+|.+.+.-|
T Consensus 341 ~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 398 (451)
T PF03961_consen 341 EELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEEL 398 (451)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666777777666655 4667889999888887777777777666555444
No 40
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=25.67 E-value=1.5e+02 Score=25.39 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=24.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007116 575 KSVESDLEKTKKVLHATVVKQHEIAEALENLRQ 607 (617)
Q Consensus 575 ~~lE~eL~~TKKaL~~tl~kQ~El~~yie~~k~ 607 (617)
.-++-.|...+..|+++...|.+|.+.|++...
T Consensus 10 ~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~ 42 (92)
T PF14712_consen 10 SLLEPDLDRLDQQLQELRQSQEELLQQIDRLNE 42 (92)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777888888888888888877653
No 41
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=24.60 E-value=2.4e+02 Score=26.33 Aligned_cols=63 Identities=13% Similarity=0.269 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 007116 536 VPCIERLQKLEKAYEELRHKPAAIPLEKEQMLVESLQRIKSVESDLEKTKKVLHATVVKQHEIA 599 (617)
Q Consensus 536 ~~~~kRl~eLE~k~~~L~~KP~~mP~EKEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~El~ 599 (617)
...-+|+.+.|..+..+...-. -=..+=....+.+.+|+.|-..|.++...|++++.-=+.|-
T Consensus 52 ~~L~~riKevd~~~~~l~~~~~-erqk~~~k~ae~L~kv~els~~L~~~~~lL~~~v~~ie~LN 114 (131)
T PF10158_consen 52 NALAKRIKEVDQEIAKLLQQMV-ERQKRFAKFAEQLEKVNELSQQLSRCQSLLNQTVPSIETLN 114 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999988876533 12344455678999999999999999999999875544433
No 42
>PF15294 Leu_zip: Leucine zipper
Probab=24.39 E-value=1.8e+02 Score=30.67 Aligned_cols=61 Identities=25% Similarity=0.311 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 007116 540 ERLQKLEKAYEELRHKPAAIPLEKEQMLVESLQRIKSVESDLEKTKKVLHATVVKQHEIAEALENLRQSKFH 611 (617)
Q Consensus 540 kRl~eLE~k~~~L~~KP~~mP~EKEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~El~~yie~~k~~k~~ 611 (617)
+-+.+||.++..|. .|=|.-+++.-.--++||.+|..| +|+-|..|.+ ++..++-=++||+
T Consensus 190 q~l~dLE~k~a~lK-------~e~ek~~~d~~~~~k~L~e~L~~~---KhelL~~Qeq-L~~aekeLekKfq 250 (278)
T PF15294_consen 190 QDLSDLENKMAALK-------SELEKALQDKESQQKALEETLQSC---KHELLRVQEQ-LSLAEKELEKKFQ 250 (278)
T ss_pred cchhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcchh-hhcchhhHHHHhC
Confidence 45678888888884 444666777778889999999998 5677888888 5666555555655
No 43
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=24.04 E-value=4.6e+02 Score=27.60 Aligned_cols=40 Identities=13% Similarity=0.173 Sum_probs=34.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 007116 531 EEDLVVPCIERLQKLEKAYEELRHKPAAIPLEKEQMLVES 570 (617)
Q Consensus 531 ~~~~~~~~~kRl~eLE~k~~~L~~KP~~mP~EKEe~L~aa 570 (617)
+...++-.|-|+..|+..++..+.+-+++.+.+++.|-+.
T Consensus 50 s~~ql~ll~~~~k~L~aE~~qwqk~~peii~~n~~VL~~l 89 (268)
T PF11802_consen 50 SDAQLSLLMMRVKCLTAELEQWQKRTPEIIPLNPEVLLTL 89 (268)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHH
Confidence 3446778899999999999999999999999988877643
No 44
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=24.03 E-value=2.5e+02 Score=29.29 Aligned_cols=22 Identities=14% Similarity=0.135 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHhhhhccc
Q 007116 591 TVVKQHEIAEALENLRQSKFHQ 612 (617)
Q Consensus 591 tl~kQ~El~~yie~~k~~k~~~ 612 (617)
+=.-|+-+.+++|++++||-+|
T Consensus 250 s~d~~egi~aflek~~~~~~~~ 271 (278)
T PLN03214 250 EPSIIKALGGVMERLSSGKEKK 271 (278)
T ss_pred CHHHHHHHHHHHHHHhhccccc
Confidence 3355888999999999887665
No 45
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.35 E-value=2.3e+02 Score=27.80 Aligned_cols=65 Identities=28% Similarity=0.366 Sum_probs=37.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcCCCCCCchhHHHHH----HHHHHhHHhhHHHHHHHHHHHHHHHHHHHH
Q 007116 532 EDLVVPCIERLQKLEKAYEELRHKPAAIPLEKEQML----VESLQRIKSVESDLEKTKKVLHATVVKQHE 597 (617)
Q Consensus 532 ~~~~~~~~kRl~eLE~k~~~L~~KP~~mP~EKEe~L----~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~E 597 (617)
-..+..++++|..+|+++..+..+...--..+++.+ ...-.=|+.|+.||.++++-+ ++|-+|-|
T Consensus 117 I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~-~~LkkQ~~ 185 (192)
T PF05529_consen 117 IRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEI-EALKKQSE 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 345678889999999999998887654444444332 222233455555555533322 24555543
No 46
>PHA02562 46 endonuclease subunit; Provisional
Probab=22.52 E-value=2.2e+02 Score=32.37 Aligned_cols=75 Identities=17% Similarity=0.303 Sum_probs=56.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007116 532 EDLVVPCIERLQKLEKAYEELRHKPAAIPLEKEQMLVESLQRIKSVESDLEKTKKVLHATVVKQHEIAEALENLRQ 607 (617)
Q Consensus 532 ~~~~~~~~kRl~eLE~k~~~L~~KP~~mP~EKEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~El~~yie~~k~ 607 (617)
.+.++.....+++|+++...|..+=.+.=...++ ++....|+..++..+...+..|++...+..+|-+=|++.+.
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~-~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~ 372 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDE-FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQA 372 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888888888888888888775544344444 77788999999999999999988877776666666665543
No 47
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=22.30 E-value=3.1e+02 Score=27.09 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhcCC
Q 007116 541 RLQKLEKAYEELRHK 555 (617)
Q Consensus 541 Rl~eLE~k~~~L~~K 555 (617)
++..||+-+..|..|
T Consensus 115 ~v~~~~q~~~~l~~K 129 (189)
T TIGR02132 115 DVTKLKQDIKSLDKK 129 (189)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555444
No 48
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=22.24 E-value=1.1e+02 Score=29.94 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 007116 562 EKEQMLVESLQRIKSVESDLEKTKKVLHATVVK 594 (617)
Q Consensus 562 EKEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~k 594 (617)
+=|..||.|+.|-=-||.||+. |-.|.+.+-|
T Consensus 4 D~EsklN~AIERnalLE~ELdE-KE~L~~~~QR 35 (166)
T PF04880_consen 4 DFESKLNQAIERNALLESELDE-KENLREEVQR 35 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHCH--
T ss_pred HHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHH
Confidence 4578899999999999999977 7778777654
No 49
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=21.42 E-value=87 Score=29.56 Aligned_cols=77 Identities=18% Similarity=0.262 Sum_probs=41.9
Q ss_pred ccccchhhhhcCCCcccccCCCcccccCCCHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 007116 43 SNKFTHSLKRRGKRKIDYRVPSVPIEDVRDEREESAVLELRQKLLERDLLPPRQDDYHTLLRFLKAREFNIERTIQMWEE 122 (617)
Q Consensus 43 ~~~~~~sl~~~~~~~~~~~~~~~~~edl~d~~e~~aL~eLR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~~ 122 (617)
..++.+.|..+|=. ..+..-+++++.+++++.+...+..........+. ..-.-+.+||..++|+.+.+...|..
T Consensus 78 ~~~I~~~L~~kGi~---~~~I~~~l~~~~~d~~e~a~~~~~k~~~~~~~~~~--~~k~Ki~~~L~rkGF~~~~I~~~l~~ 152 (157)
T PRK00117 78 PRRIRQELRQKGVD---REIIEEALAELDIDWEELARELARKKFRRPLPDDA--KEKAKLVRFLARRGFSMDVIQRVLRN 152 (157)
T ss_pred HHHHHHHHHHcCCC---HHHHHHHHHHcCccHHHHHHHHHHHHcCCCCCCCH--HHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 44577888888843 22222334444333333333333333221111000 11246899999999999988888876
Q ss_pred HH
Q 007116 123 ML 124 (617)
Q Consensus 123 ~l 124 (617)
++
T Consensus 153 ~~ 154 (157)
T PRK00117 153 AL 154 (157)
T ss_pred hh
Confidence 54
No 50
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=21.38 E-value=1.5e+02 Score=29.56 Aligned_cols=31 Identities=35% Similarity=0.468 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHhHHhhHH-------HHHHHHHHHHHH
Q 007116 561 LEKEQMLVESLQRIKSVES-------DLEKTKKVLHAT 591 (617)
Q Consensus 561 ~EKEe~L~aa~~Ri~~lE~-------eL~~TKKaL~~t 591 (617)
.||-+||.+|=.||+.|.. ||++||++-+-+
T Consensus 140 ~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA 177 (188)
T PF05335_consen 140 AEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAAYKA 177 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999986 556666665543
No 51
>COG4479 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.81 E-value=2.4e+02 Score=23.59 Aligned_cols=48 Identities=27% Similarity=0.533 Sum_probs=33.9
Q ss_pred HHHHHHHHcCCCCCCCCCCHHHHHHHHHhcC---CCHHHHHHHHHHHHHHH
Q 007116 80 LELRQKLLERDLLPPRQDDYHTLLRFLKARE---FNIERTIQMWEEMLIWR 127 (617)
Q Consensus 80 ~eLR~~L~~~~~Lp~~~dD~~~LLRFLrArk---fDvekA~~~L~~~l~WR 127 (617)
.+|-+.+-.....|...+|++.|-+||.... |++..-=+.|+.|+.|-
T Consensus 22 ~~lAn~af~D~sFPK~t~Df~~is~YLE~~a~f~~~m~~FDeiwe~Yle~~ 72 (74)
T COG4479 22 TELANLAFDDHSFPKHTDDFHEISDYLETNADFLFNMSVFDEIWEEYLEHL 72 (74)
T ss_pred HHHHHHHhhcccCCCCCccHHHHHHHHHhcCCcccchhhHHHHHHHHHHHh
Confidence 3344445555667887888899999998664 56666667788888774
No 52
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=20.32 E-value=4.7e+02 Score=27.05 Aligned_cols=74 Identities=15% Similarity=0.257 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHHHHHHhc---------CCC-CCCchhHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007116 535 VVPCIERLQKLEKAYEELR---------HKP-AAIPLEKEQMLVESLQRIKSVESDLEKTKKVLHATVVKQHEIAEALEN 604 (617)
Q Consensus 535 ~~~~~kRl~eLE~k~~~L~---------~KP-~~mP~EKEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~El~~yie~ 604 (617)
...++.+...+|.+|..|. +|| -+|=..=+++|++.-.||..||.++..+|.--.+||-.-++|.+-|=.
T Consensus 144 H~~~~~~~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeIH~ 223 (239)
T PF05276_consen 144 HQRRARIYNEAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEIHE 223 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554 333 134445688999999999999999999999999999999999999966
Q ss_pred Hhhh
Q 007116 605 LRQS 608 (617)
Q Consensus 605 ~k~~ 608 (617)
+...
T Consensus 224 ~R~~ 227 (239)
T PF05276_consen 224 QRRR 227 (239)
T ss_pred HHhh
Confidence 6544
No 53
>PRK09039 hypothetical protein; Validated
Probab=20.14 E-value=6.9e+02 Score=27.07 Aligned_cols=17 Identities=12% Similarity=0.395 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHhccc
Q 007116 485 LLSFMVRIFAIFGSLQL 501 (617)
Q Consensus 485 l~~~~~~l~t~~r~~~~ 501 (617)
|+.||+.||.+.-+|..
T Consensus 29 ~~~f~l~~f~~~q~fLs 45 (343)
T PRK09039 29 VIMFLLTVFVVAQFFLS 45 (343)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456666666555544
No 54
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=20.13 E-value=8.2e+02 Score=24.96 Aligned_cols=61 Identities=23% Similarity=0.202 Sum_probs=43.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007116 532 EDLVVPCIERLQKLEKAYEELRHKPAAIPLEKEQMLVESLQRIKSVESDLEKTKKVLHATVVKQHEIAEAL 602 (617)
Q Consensus 532 ~~~~~~~~kRl~eLE~k~~~L~~KP~~mP~EKEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~El~~yi 602 (617)
...+..+..+.+++|++...--.+-. |.+-..++.|+..||..+...+.. +..|.+.++-+
T Consensus 58 e~~~~~~~~~~~k~e~~A~~Al~~g~------E~LAr~al~~~~~le~~~~~~~~~----~~~~~~~~~~l 118 (225)
T COG1842 58 ERKLEEAQARAEKLEEKAELALQAGN------EDLAREALEEKQSLEDLAKALEAE----LQQAEEQVEKL 118 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 44677888888899988877666644 999999999999888776655544 44444444333
No 55
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=20.03 E-value=2.4e+02 Score=26.56 Aligned_cols=59 Identities=27% Similarity=0.454 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCc-hhHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007116 539 IERLQKLEKAYEELRHKPAAIP-LEKEQMLVESLQRIKSVESDLEKTKKVLHATVVKQHEIAEALENLR 606 (617)
Q Consensus 539 ~kRl~eLE~k~~~L~~KP~~mP-~EKEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~El~~yie~~k 606 (617)
+..-..+|.-++.| |.+. .|.+++ .||+.||.|+...-+-|.+++..=+++++-|+..-
T Consensus 79 i~kakqIe~LIdsL----Pg~~~see~Q~-----~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i 138 (144)
T PF11221_consen 79 IRKAKQIEYLIDSL----PGIEVSEEEQL-----KRIKELEEENEEAEEELQEAVKEAEELLKQVQELI 138 (144)
T ss_dssp HHHHHHHHHHHHHS----TTSSS-HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC----CCCCCCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555 3333 444443 89999999999999999999999999999887653
Done!