Query 007116
Match_columns 617
No_of_seqs 372 out of 1567
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 17:34:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007116.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007116hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8g_A CRAL-TRIO domain-contai 100.0 9.7E-55 3.3E-59 457.9 19.3 273 60-337 25-304 (320)
2 1aua_A Phosphatidylinositol tr 100.0 6.4E-54 2.2E-58 445.8 21.1 269 63-336 19-288 (296)
3 3hx3_A Retinaldehyde-binding p 100.0 6.8E-47 2.3E-51 397.5 18.2 242 60-317 41-295 (316)
4 1r5l_A Alpha-TTP, protein (alp 100.0 1.9E-46 6.6E-51 381.7 16.7 250 72-356 5-257 (262)
5 1olm_A SEC14-like protein 2; l 100.0 1.2E-45 4.1E-50 399.7 23.7 248 63-318 1-249 (403)
6 3pg7_A Neurofibromin; SEC lipi 99.1 1.2E-10 4.1E-15 118.5 7.2 128 156-306 16-144 (256)
7 3peg_A Neurofibromin; SEC14 do 98.8 2.8E-09 9.5E-14 110.2 5.5 128 156-305 35-162 (290)
8 2bni_A General control protein 73.3 3.7 0.00013 28.1 3.6 16 540-555 1-16 (34)
9 3c3g_A Alpha/beta peptide with 70.3 5.3 0.00018 27.1 3.7 14 541-554 1-14 (33)
10 2oxj_A Hybrid alpha/beta pepti 69.0 5.8 0.0002 27.1 3.7 30 540-577 1-30 (34)
11 2hy6_A General control protein 68.9 1.4 4.7E-05 30.1 0.7 16 540-555 1-16 (34)
12 3c3f_A Alpha/beta peptide with 68.7 6.9 0.00024 26.7 4.0 15 540-554 1-15 (34)
13 2wq1_A General control protein 67.9 7.4 0.00025 26.4 4.0 14 541-554 1-14 (33)
14 1uo4_A General control protein 66.7 5.8 0.0002 27.2 3.3 15 540-554 1-15 (34)
15 3m48_A General control protein 61.2 7.8 0.00027 26.4 3.2 14 541-554 1-14 (33)
16 1kd8_A GABH AIV, GCN4 acid bas 58.6 12 0.00041 25.9 3.8 14 540-553 1-14 (36)
17 1nkp_A C-MYC, MYC proto-oncoge 58.2 49 0.0017 27.4 8.5 67 540-606 16-86 (88)
18 1nkp_B MAX protein, MYC proto- 55.6 44 0.0015 27.1 7.8 64 540-603 12-78 (83)
19 3a8y_C BAG family molecular ch 54.1 27 0.00094 31.7 6.6 67 533-606 34-109 (142)
20 1kd8_B GABH BLL, GCN4 acid bas 53.1 24 0.00082 24.4 4.6 16 540-555 1-16 (36)
21 1ugo_A BCL2-associated athanog 49.5 35 0.0012 29.2 6.2 69 533-605 18-92 (99)
22 2r2v_A GCN4 leucine zipper; co 49.5 24 0.00081 24.2 4.0 16 540-555 1-16 (34)
23 1m62_A BAG-family molecular ch 46.5 61 0.0021 27.0 7.1 66 532-604 10-84 (87)
24 1wgl_A TOLL-interacting protei 39.3 28 0.00097 26.8 3.7 39 76-122 10-48 (59)
25 1ic2_A Tropomyosin alpha chain 38.0 1E+02 0.0035 24.9 7.2 60 534-597 14-73 (81)
26 3htk_A Structural maintenance 37.7 1.3E+02 0.0043 22.6 7.4 46 563-608 10-55 (60)
27 2dam_A ETEA protein; KIAA0887, 37.5 83 0.0029 24.6 6.4 42 72-121 15-56 (67)
28 1uk5_A BAG-family molecular ch 35.9 74 0.0025 27.7 6.2 68 532-606 29-105 (111)
29 2dhy_A CUE domain-containing p 35.2 52 0.0018 26.0 4.8 44 72-123 15-58 (67)
30 1pl5_A Regulatory protein SIR4 34.8 31 0.001 29.7 3.5 41 572-612 95-135 (142)
31 1m7k_A Silencer of death domai 34.4 94 0.0032 26.5 6.5 68 530-604 21-97 (99)
32 3rrk_A V-type ATPase 116 kDa s 32.3 1.4E+02 0.0046 30.6 8.9 65 542-606 198-268 (357)
33 3etw_A Adhesin A; antiparallel 32.2 1E+02 0.0035 27.1 6.6 73 536-608 5-107 (119)
34 1v92_A NSFL1 cofactor P47; 3-h 32.1 69 0.0024 22.6 4.7 37 75-120 5-41 (46)
35 1nyh_A Regulatory protein SIR4 31.2 37 0.0013 29.9 3.5 41 572-612 119-159 (166)
36 1yke_B RNA polymerase II holoe 31.0 2.8E+02 0.0095 25.2 9.7 69 530-606 50-126 (151)
37 2dal_A Protein KIAA0794; FAS a 30.5 1E+02 0.0035 23.6 5.7 40 72-120 12-51 (62)
38 2oqq_A Transcription factor HY 29.3 37 0.0013 24.4 2.6 16 538-553 15-30 (42)
39 2p2u_A HOST-nuclease inhibitor 26.5 3.8E+02 0.013 24.6 10.2 67 530-609 13-79 (171)
40 1ufz_A Hypothetical protein BA 26.2 86 0.0029 25.9 4.7 41 76-123 35-75 (83)
41 4aya_A DNA-binding protein inh 25.9 88 0.003 26.6 4.9 45 539-583 34-82 (97)
42 2di0_A Activating signal coint 23.8 1.3E+02 0.0044 24.1 5.2 43 72-122 10-52 (71)
43 2ql2_B Neurod1, neurogenic dif 23.8 90 0.0031 23.9 4.2 43 540-582 12-58 (60)
44 3u1c_A Tropomyosin alpha-1 cha 23.5 1.4E+02 0.0049 25.1 5.9 57 537-597 20-76 (101)
45 3hf0_A GCN4-PLI SIDE chain seq 23.5 1.4E+02 0.0049 19.6 4.4 28 563-590 6-33 (34)
46 2z5i_I TM, tropomyosin alpha-1 22.3 60 0.0021 23.1 2.7 19 569-587 21-39 (40)
47 1hlo_A Protein (transcription 22.0 1.1E+02 0.0037 24.6 4.6 48 539-586 21-71 (80)
48 3he4_B Synzip5; heterodimeric 21.7 97 0.0033 21.7 3.5 37 538-585 8-44 (46)
49 3cve_A Homer protein homolog 1 21.6 3.1E+02 0.011 21.9 7.2 32 536-585 3-34 (72)
50 2ke4_A CDC42-interacting prote 21.5 1.2E+02 0.0041 25.7 5.0 46 545-591 41-88 (98)
51 2ovc_A Potassium voltage-gated 20.1 49 0.0017 22.6 1.8 20 536-555 6-25 (33)
No 1
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=9.7e-55 Score=457.89 Aligned_cols=273 Identities=34% Similarity=0.613 Sum_probs=246.1
Q ss_pred ccCCCcccccCCCHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCcccch
Q 007116 60 YRVPSVPIEDVRDEREESAVLELRQKLLERDLLPPRQDDYHTLLRFLKAREFNIERTIQMWEEMLIWRKEYGTDTILEDF 139 (617)
Q Consensus 60 ~~~~~~~~edl~d~~e~~aL~eLR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~~~l~WRk~~~~d~i~~d~ 139 (617)
...++....++ +++|+++|++||+||.++++ +...|| .+||||||||+||+++|.+||++|++||++++++.+..++
T Consensus 25 ~~~~~g~~~~l-t~~q~~~l~~lR~~l~~~~~-~~~~dD-~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~ 101 (320)
T 3q8g_A 25 PNALPGTPGNL-TKEQEEALLQFRSILLEKNY-KERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDY 101 (320)
T ss_dssp TTSCTTSTTCC-CHHHHHHHHHHHHHHHHTTC-CSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHH
T ss_pred CCCCCCCCCCC-CHHHHHHHHHHHHHHHhcCC-CCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcccccccc
Confidence 34556667777 58889999999999999884 455555 6999999999999999999999999999999998888765
Q ss_pred hhH------HHHHHHhhcccccccCCCCCCcEEEEecCCCCcccccccccHHHHHHHHHHHHHHHHHhhcccchhhhcCC
Q 007116 140 EFE------ELEEVLQYYPQGYHGVDKEGRPVYIELLGKAHPSRLMRITTVDRYLKYHVQEFERALLERFPACSVAAKRR 213 (617)
Q Consensus 140 ~~~------el~~v~~~~p~~~~G~Dk~GRpV~i~rlg~~Dp~kl~~~~t~~~~ir~~v~~lE~~l~~~~p~cs~~~~~~ 213 (617)
.+. +...+.++++++++|+|++||||+|+++|++|+.++++.++.+++++++++.+|.+++..++.|+...+..
T Consensus 102 ~~~~~~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ 181 (320)
T 3q8g_A 102 ENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYL 181 (320)
T ss_dssp HHTHHHHHHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSC
T ss_pred ccccccchhHHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCC
Confidence 544 44457788999999999999999999999999999877788999999999999999987778888777778
Q ss_pred cCcEEEEEeCCCCCcCCcchHHHHHHHHHHHhcccccccccceEEEEeCChhHHHHHHHHHhhcCChhhhceeEEcCCCc
Q 007116 214 ICSTTTILDVQGLGMKHFTRTAANLLAAVAKVDNCYYPETLHQMFIVNAGPGFKKMLWPAAQKFLDPKSIAKIHVLEPKS 293 (617)
Q Consensus 214 i~g~tvIiDl~G~sl~~~~~~~~~llk~i~kilq~~YPerL~~i~IINaP~~f~~~lw~lvKpFL~~ktr~KI~~~~~~~ 293 (617)
++++++|+|++|+++++++.. +.+++.+++++|++||+||+++||||+|++| .++|++++|||+++|++||+|+++++
T Consensus 182 ve~~~~IiD~~g~sl~~~~~~-~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f-~~~~~~ikpfl~~~t~~KI~~~~~~~ 259 (320)
T 3q8g_A 182 IETSCTVLDLKGISLSNAYHV-LSYIKDVADISQNYYPERMGKFYIIHSPFGF-STMFKMVKPFLDPVTVSKIFILGSSY 259 (320)
T ss_dssp CCCEEEEEECTTCCHHHHHHT-HHHHHHHHHHHHHHSTTCEEEEEEESCCTTH-HHHHTTTGGGSCHHHHHTEEECCTTH
T ss_pred cceeEEEEECCCCCHHHHHHH-HHHHHHHHHHHHhhCchhhceEEEECCCHHH-HHHHHHHHHhCCHHHhhhEEEeCCCc
Confidence 999999999999999998753 7889999999999999999999999999999 99999999999999999999999877
Q ss_pred hhHHHccCCCCCCCccCCCCCCCCC-CCCcccCCCCCCCcHHHHH
Q 007116 294 LGKLLEVIDASQLPDFLGGSCTCSV-EGGCLRSNKGPWNEPEIMK 337 (617)
Q Consensus 294 ~~~L~e~Id~s~LP~eyGGt~~~~~-~~gcl~~~~gpw~dp~i~~ 337 (617)
.+.|.++||+++||++|||+++|.+ +|||+.+|.|||+||++.+
T Consensus 260 ~~~L~~~i~~~~LP~~yGG~~~~~~~~ggc~~~~~gpw~~~~~~~ 304 (320)
T 3q8g_A 260 KKELLKQIPIENLPVKYGGTSVLHNPNDKFYYSDIGPWRDPRYIG 304 (320)
T ss_dssp HHHHHHHSCGGGSBGGGTSCBCCSSTTSCGGGBCBSGGGCTTTCC
T ss_pred HHHHHhhCChhhCChhhCCCCCCCCCCCCeecCCCCCCCChhhcC
Confidence 8899999999999999999999987 6999999999999997754
No 2
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=6.4e-54 Score=445.83 Aligned_cols=269 Identities=36% Similarity=0.654 Sum_probs=242.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCcccchhhH
Q 007116 63 PSVPIEDVRDEREESAVLELRQKLLERDLLPPRQDDYHTLLRFLKAREFNIERTIQMWEEMLIWRKEYGTDTILEDFEFE 142 (617)
Q Consensus 63 ~~~~~edl~d~~e~~aL~eLR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~~~l~WRk~~~~d~i~~d~~~~ 142 (617)
++....++ +++|+++|++||+||.++++ +...|| .+||||||||+||+++|.+||++|++||++++++.+..+....
T Consensus 19 ~~~~~~~l-~~~q~~~l~~lr~~l~~~~~-~~~~dd-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~ 95 (296)
T 1aua_A 19 LPGTPGNL-DSAQEKALAELRKLLEDAGF-IERLDD-STLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYD 95 (296)
T ss_dssp CTTSTTTC-CTTHHHHHHHHHHHHHHTTC-CSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCT
T ss_pred CCCCCCCC-CHHHHHHHHHHHHHHHhcCC-CCCCch-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccC
Confidence 44455566 56678999999999998884 555566 6999999999999999999999999999999988877665443
Q ss_pred HHHHHHhhcccccccCCCCCCcEEEEecCCCCcccccccccHHHHHHHHHHHHHHHHHhhcccchhhhcCCcCcEEEEEe
Q 007116 143 ELEEVLQYYPQGYHGVDKEGRPVYIELLGKAHPSRLMRITTVDRYLKYHVQEFERALLERFPACSVAAKRRICSTTTILD 222 (617)
Q Consensus 143 el~~v~~~~p~~~~G~Dk~GRpV~i~rlg~~Dp~kl~~~~t~~~~ir~~v~~lE~~l~~~~p~cs~~~~~~i~g~tvIiD 222 (617)
+...+.++++++++|+|++||||+|+++|++|++++.+..+.+++++++++.+|.+++.++++|+...+.+++++++|+|
T Consensus 96 ~~~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D 175 (296)
T 1aua_A 96 EKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMD 175 (296)
T ss_dssp THHHHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEE
T ss_pred cHHHHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEE
Confidence 33456778888899999999999999999999999888889999999999999999988778888777788999999999
Q ss_pred CCCCCcCCcchHHHHHHHHHHHhcccccccccceEEEEeCChhHHHHHHHHHhhcCChhhhceeEEcCCCchhHHHccCC
Q 007116 223 VQGLGMKHFTRTAANLLAAVAKVDNCYYPETLHQMFIVNAGPGFKKMLWPAAQKFLDPKSIAKIHVLEPKSLGKLLEVID 302 (617)
Q Consensus 223 l~G~sl~~~~~~~~~llk~i~kilq~~YPerL~~i~IINaP~~f~~~lw~lvKpFL~~ktr~KI~~~~~~~~~~L~e~Id 302 (617)
++|++++|++.. +.+++.+++++|++||+||+++||||+|++| .++|++|||||+++|++||+|+++++.+.|.++||
T Consensus 176 ~~g~s~~~~~~~-~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f-~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~ 253 (296)
T 1aua_A 176 LKGISISSAYSV-MSYVREASYISQNYYPERMGKFYIINAPFGF-STAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIP 253 (296)
T ss_dssp CTTCCHHHHHHH-HHHHHHHHHHHHHHSTTCEEEEEEESCCHHH-HHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSC
T ss_pred CCCCCHHHHHHH-HHHHHHHHHHHHHhHHHhhCeEEEECchHHH-HHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCC
Confidence 999999999854 7899999999999999999999999999999 99999999999999999999999878889999999
Q ss_pred CCCCCccCCCCCCCCC-CCCcccCCCCCCCcHHHH
Q 007116 303 ASQLPDFLGGSCTCSV-EGGCLRSNKGPWNEPEIM 336 (617)
Q Consensus 303 ~s~LP~eyGGt~~~~~-~~gcl~~~~gpw~dp~i~ 336 (617)
+++||++|||+++|++ +|||+.++.|||++|++.
T Consensus 254 ~~~LP~~yGG~~~~~~~~~g~~~~~~~~w~~~~~~ 288 (296)
T 1aua_A 254 AENLPVKFGGKSEVDESKGGLYLSDIGPWRDPKYI 288 (296)
T ss_dssp SSSSBGGGTSCBCCCGGGCCSTTCCCSGGGCGGGC
T ss_pred HhhCcHHhCCCCCCCCCCCCceeCCCCCCCChhhc
Confidence 9999999999999987 589999999999999874
No 3
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=6.8e-47 Score=397.47 Aligned_cols=242 Identities=19% Similarity=0.301 Sum_probs=199.2
Q ss_pred ccCCCcccccCCCHH--HHHHHHHHHHHHHcCCCCCC----------CCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 007116 60 YRVPSVPIEDVRDER--EESAVLELRQKLLERDLLPP----------RQDDYHTLLRFLKAREFNIERTIQMWEEMLIWR 127 (617)
Q Consensus 60 ~~~~~~~~edl~d~~--e~~aL~eLR~~L~~~~~Lp~----------~~dD~~~LLRFLrArkfDvekA~~~L~~~l~WR 127 (617)
..+..+|.+||++++ .+++|++||+||.++|++++ +.+|+.+||||||||+||+++|++||.+|++||
T Consensus 41 ~~~~~~a~~eL~E~~~~~~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD~~LlRFLRarkfdv~kA~~~L~~~l~wR 120 (316)
T 3hx3_A 41 RHTLQKAKDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFR 120 (316)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhCCCccccccccccccCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 346678899999776 48999999999999998741 334447999999999999999999999999999
Q ss_pred HHcCCCCcccchhhHHHHHHH-hhcccccccCCCCCCcEEEEecCCCCcccccccccHHHHHHHHHHHHHHHHHhhcccc
Q 007116 128 KEYGTDTILEDFEFEELEEVL-QYYPQGYHGVDKEGRPVYIELLGKAHPSRLMRITTVDRYLKYHVQEFERALLERFPAC 206 (617)
Q Consensus 128 k~~~~d~i~~d~~~~el~~v~-~~~p~~~~G~Dk~GRpV~i~rlg~~Dp~kl~~~~t~~~~ir~~v~~lE~~l~~~~p~c 206 (617)
++++. +..+..+.++.... ..++.+++|+|++||||+|+++|++|++++ +.+++++++++.+|.++..
T Consensus 121 ~~~~~--~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~----~~~~~~r~~~~~lE~~l~~----- 189 (316)
T 3hx3_A 121 LQYPE--LFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEI----TFDEILQAYCFILEKLLEN----- 189 (316)
T ss_dssp HHCGG--GTTTCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTS----CHHHHHHHHHHHHHHHTTS-----
T ss_pred HhCch--hhcCCCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCC----CHHHHHHHHHHHHHHHHhc-----
Confidence 99984 33333444554433 445667899999999999999999999987 8999999999999998754
Q ss_pred hhhhcCCcCcEEEEEeCCCCCcCCcchHHHHHHHHHHHhcccccccccceEEEEeCChhHHHHHHHHHhhcCChhhhcee
Q 007116 207 SVAAKRRICSTTTILDVQGLGMKHFTRTAANLLAAVAKVDNCYYPETLHQMFIVNAGPGFKKMLWPAAQKFLDPKSIAKI 286 (617)
Q Consensus 207 s~~~~~~i~g~tvIiDl~G~sl~~~~~~~~~llk~i~kilq~~YPerL~~i~IINaP~~f~~~lw~lvKpFL~~ktr~KI 286 (617)
.+.++.|+++|+|++|++++|+....+..++.+++++|++||+||+++||||+|++| .++|+++||||+++|++||
T Consensus 190 ---~~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f-~~i~~ivkpfl~~kt~~KI 265 (316)
T 3hx3_A 190 ---EETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYF-TTTYNVVKPFLKSKLLERV 265 (316)
T ss_dssp ---HHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTH-HHHHHHHGGGCCHHHHTTE
T ss_pred ---ccCCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHH-HHHHHHHHHhCCHHhhhhe
Confidence 345789999999999999999876667889999999999999999999999999999 9999999999999999999
Q ss_pred EEcCCCchhHHHccCCCCCCCccCCCCCCCC
Q 007116 287 HVLEPKSLGKLLEVIDASQLPDFLGGSCTCS 317 (617)
Q Consensus 287 ~~~~~~~~~~L~e~Id~s~LP~eyGGt~~~~ 317 (617)
+|++++ .++|.++||+++||++|||++++.
T Consensus 266 ~~~~~~-~~~L~~~I~~~~LP~eyGG~~~~~ 295 (316)
T 3hx3_A 266 FVHGDD-LSGFYQEIDENILPSDFGGTLPKY 295 (316)
T ss_dssp EEEETC-CHHHHHHSCGGGSBGGGTSSBCCC
T ss_pred EEeCCC-HHHHHhhCCHhhCcHhhCCCCCCc
Confidence 999865 479999999999999999999863
No 4
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=1.9e-46 Score=381.73 Aligned_cols=250 Identities=19% Similarity=0.272 Sum_probs=212.2
Q ss_pred CHHHHHHHHHHHHHHHcCC--CCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCcccchhhHHHHHH-H
Q 007116 72 DEREESAVLELRQKLLERD--LLPPRQDDYHTLLRFLKAREFNIERTIQMWEEMLIWRKEYGTDTILEDFEFEELEEV-L 148 (617)
Q Consensus 72 d~~e~~aL~eLR~~L~~~~--~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~~~l~WRk~~~~d~i~~d~~~~el~~v-~ 148 (617)
++.++++|++||+|+.+++ ++|...|| .+|+||||||+||+++|.+||++|++||++++. +..+..+.++... .
T Consensus 5 s~~~~~~l~~lr~~l~~~~~~~~~~~~dd-~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~--i~~~~~~~~~~~~~~ 81 (262)
T 1r5l_A 5 SPLLQPGLAALRRRAREAGVPLAPLPLTD-SFLLRFLRARDFDLDLAWRLLKNYYKWRAECPE--ISADLHPRSIIGLLK 81 (262)
T ss_dssp ----CTTHHHHHHHHHHHTCCCSSSCCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHH--HHSCCCGGGTHHHHH
T ss_pred cHHHHHHHHHHHHHHHhCCcccCCCCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChH--hhhcCChHHHHHHHH
Confidence 4567789999999999765 45666666 699999999999999999999999999999873 2222222233222 3
Q ss_pred hhcccccccCCCCCCcEEEEecCCCCcccccccccHHHHHHHHHHHHHHHHHhhcccchhhhcCCcCcEEEEEeCCCCCc
Q 007116 149 QYYPQGYHGVDKEGRPVYIELLGKAHPSRLMRITTVDRYLKYHVQEFERALLERFPACSVAAKRRICSTTTILDVQGLGM 228 (617)
Q Consensus 149 ~~~p~~~~G~Dk~GRpV~i~rlg~~Dp~kl~~~~t~~~~ir~~v~~lE~~l~~~~p~cs~~~~~~i~g~tvIiDl~G~sl 228 (617)
..+..+++|+|++||||+++++|++|++++ +..++++++++.+|.++.. .+.++.|+++|+|++|+++
T Consensus 82 ~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~----~~~~~~r~~~~~~E~~~~~--------~~~~~~g~~~I~D~~g~s~ 149 (262)
T 1r5l_A 82 AGYHGVLRSRDPTGSKVLIYRIAHWDPKVF----TAYDVFRVSLITSELIVQE--------VETQRNGIKAIFDLEGWQF 149 (262)
T ss_dssp TTCEEECSSCCTTCCEEEEEEGGGCCTTTS----CHHHHHHHHHHHHHHHTTS--------HHHHHHCEEEEEECTTCCH
T ss_pred cCCccCCCCcCCCCCEEEEEeccccCcccC----CHHHHHHHHHHHHHHHHhC--------hhhcccceEEEEECCCCCH
Confidence 334456789999999999999999999987 8899999999999987654 2345789999999999999
Q ss_pred CCcchHHHHHHHHHHHhcccccccccceEEEEeCChhHHHHHHHHHhhcCChhhhceeEEcCCCchhHHHccCCCCCCCc
Q 007116 229 KHFTRTAANLLAAVAKVDNCYYPETLHQMFIVNAGPGFKKMLWPAAQKFLDPKSIAKIHVLEPKSLGKLLEVIDASQLPD 308 (617)
Q Consensus 229 ~~~~~~~~~llk~i~kilq~~YPerL~~i~IINaP~~f~~~lw~lvKpFL~~ktr~KI~~~~~~~~~~L~e~Id~s~LP~ 308 (617)
+|+.+..++.++.+++++|++||+||+++||||+|++| .++|++++|||+++|++||+|+++++.+.|.++|| ++||+
T Consensus 150 ~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f-~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~ 227 (262)
T 1r5l_A 150 SHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIF-HAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPL 227 (262)
T ss_dssp HHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGG-HHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCG
T ss_pred HHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHH-HHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcH
Confidence 99877778899999999999999999999999999999 99999999999999999999998877899999999 99999
Q ss_pred cCCCCCCCCCCCCcccCCCCCCCcHHHHHHHhhhhhhhhhhccccccc
Q 007116 309 FLGGSCTCSVEGGCLRSNKGPWNEPEIMKLVHNAGATVVRQVSRVHDD 356 (617)
Q Consensus 309 eyGGt~~~~~~~gcl~~~~gpw~dp~i~~~v~~~~~~~~~~r~~~~~~ 356 (617)
+|||++++ +.++...|...+..+++++.+.
T Consensus 228 ~yGG~~~~------------------~~~~~~~w~~~l~~~~~~~~~~ 257 (262)
T 1r5l_A 228 EYGGEEFS------------------MEDICQEWTNFIMKSEDYLSSI 257 (262)
T ss_dssp GGTCSSCC------------------HHHHHHHHHHHHHHTHHHHHHT
T ss_pred hhCCCCCC------------------HHHHHHHHHHHHHHHHHHHHHh
Confidence 99999876 7788888999999998887654
No 5
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=1.2e-45 Score=399.70 Aligned_cols=248 Identities=28% Similarity=0.416 Sum_probs=218.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHHHcC-CCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCcccchhh
Q 007116 63 PSVPIEDVRDEREESAVLELRQKLLER-DLLPPRQDDYHTLLRFLKAREFNIERTIQMWEEMLIWRKEYGTDTILEDFEF 141 (617)
Q Consensus 63 ~~~~~edl~d~~e~~aL~eLR~~L~~~-~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~~~l~WRk~~~~d~i~~d~~~ 141 (617)
|++...++ ++.|+++|++||+||... +++|. .|| .+||||||||+||+++|.+||++|++||++++++.+..+. .
T Consensus 1 ~~g~~~~l-~~~q~~~l~~lr~~l~~~~~~l~~-~dD-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~-~ 76 (403)
T 1olm_A 1 MSGRVGDL-SPRQKEALAKFRENVQDVLPALPN-PDD-YFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQ-P 76 (403)
T ss_dssp CCSBTTBC-CHHHHHHHHHHHHHHGGGGGGSSC-CCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGSC-C
T ss_pred CCCCccCC-CHHHHHHHHHHHHHHHhhccCCCC-CCh-hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccccC-C
Confidence 34455666 688899999999999987 35663 555 6999999999999999999999999999999988776532 2
Q ss_pred HHHHHHHhhcccccccCCCCCCcEEEEecCCCCcccccccccHHHHHHHHHHHHHHHHHhhcccchhhhcCCcCcEEEEE
Q 007116 142 EELEEVLQYYPQGYHGVDKEGRPVYIELLGKAHPSRLMRITTVDRYLKYHVQEFERALLERFPACSVAAKRRICSTTTIL 221 (617)
Q Consensus 142 ~el~~v~~~~p~~~~G~Dk~GRpV~i~rlg~~Dp~kl~~~~t~~~~ir~~v~~lE~~l~~~~p~cs~~~~~~i~g~tvIi 221 (617)
++ .+.++++++++|+|++||||+++++|++|+.++++..+.+++++++++.+|.++..+. .|+...+.++.|+++|+
T Consensus 77 ~~--~~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~-~~s~~~g~~v~~~~~I~ 153 (403)
T 1olm_A 77 PE--VIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECA-HQTTKLGRKVETITIIY 153 (403)
T ss_dssp CH--HHHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHH-HHHHHHTSCCCCEEEEE
T ss_pred HH--HHHHhCCceeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHH-hhHHhhCCcccceEEEE
Confidence 22 3456788889999999999999999999999877777999999999999999988643 33444455799999999
Q ss_pred eCCCCCcCCcchHHHHHHHHHHHhcccccccccceEEEEeCChhHHHHHHHHHhhcCChhhhceeEEcCCCchhHHHccC
Q 007116 222 DVQGLGMKHFTRTAANLLAAVAKVDNCYYPETLHQMFIVNAGPGFKKMLWPAAQKFLDPKSIAKIHVLEPKSLGKLLEVI 301 (617)
Q Consensus 222 Dl~G~sl~~~~~~~~~llk~i~kilq~~YPerL~~i~IINaP~~f~~~lw~lvKpFL~~ktr~KI~~~~~~~~~~L~e~I 301 (617)
|++|++++|++.+.+++++.+++++|++||+||+++||||+|++| .++|+++||||+++|++||+|+++++.+.|.++|
T Consensus 154 D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f-~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I 232 (403)
T 1olm_A 154 DCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLF-PVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHI 232 (403)
T ss_dssp ECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTH-HHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTS
T ss_pred ECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHH-HHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhc
Confidence 999999999988888999999999999999999999999999999 9999999999999999999999877778999999
Q ss_pred CCCCCCccCCCCCCCCC
Q 007116 302 DASQLPDFLGGSCTCSV 318 (617)
Q Consensus 302 d~s~LP~eyGGt~~~~~ 318 (617)
|+++||++|||++++++
T Consensus 233 ~~~~LP~~yGG~~~~~~ 249 (403)
T 1olm_A 233 SPDQVPVEYGGTMTDPD 249 (403)
T ss_dssp CGGGSBGGGTSSBCCTT
T ss_pred ChhhCchhhCCCcCCCC
Confidence 99999999999999854
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.07 E-value=1.2e-10 Score=118.47 Aligned_cols=128 Identities=14% Similarity=0.171 Sum_probs=105.9
Q ss_pred ccCCCCCCcEEEEecCCCCcccccccccHHHHHHHHHHHHHHHHHhhcccchhhhcCCcCcEEEEEeCCCCCcCCcchHH
Q 007116 156 HGVDKEGRPVYIELLGKAHPSRLMRITTVDRYLKYHVQEFERALLERFPACSVAAKRRICSTTTILDVQGLGMKHFTRTA 235 (617)
Q Consensus 156 ~G~Dk~GRpV~i~rlg~~Dp~kl~~~~t~~~~ir~~v~~lE~~l~~~~p~cs~~~~~~i~g~tvIiDl~G~sl~~~~~~~ 235 (617)
.|.|++||||+++.+.++++..+ +.+.++.|.+..++... -..+++|+|++|++..+.. .
T Consensus 16 ~G~d~dGrpViv~~~~~l~~~~~----D~e~Ll~~vl~tl~~~~--------------~~~y~lV~d~T~~~~~n~p--~ 75 (256)
T 3pg7_A 16 AGTSKAGNPIFYYVARRFKTGQI----NGDLLIYHVLLTLKPYY--------------AKPYEIVVDLTHTGPSNRF--K 75 (256)
T ss_dssp EEECTTSCEEEEEEGGGCCBTTB----CHHHHHHHHHHHHTTTT--------------TSCEEEEEECTTCCGGGCC--C
T ss_pred cCcCCCCCEEEEEEeecCCCCCC----CHHHHHHHHHHHHHHhc--------------CCCeEEEEECCCCCcccCC--c
Confidence 48999999999999999998766 78888877777666433 2468999999999987655 3
Q ss_pred HHHHHHHHHhcccccccccceEEEEeCChhHHHHHH-HHHhhcCChhhhceeEEcCCCchhHHHccCCCCCC
Q 007116 236 ANLLAAVAKVDNCYYPETLHQMFIVNAGPGFKKMLW-PAAQKFLDPKSIAKIHVLEPKSLGKLLEVIDASQL 306 (617)
Q Consensus 236 ~~llk~i~kilq~~YPerL~~i~IINaP~~f~~~lw-~lvKpFL~~ktr~KI~~~~~~~~~~L~e~Id~s~L 306 (617)
...++.+..++...|...|+++||+|++++| +..| .+.++|.+.+...|++++++ .++|.++|+.++|
T Consensus 76 ~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~-k~~~~~~~~~~~~~k~~~Ki~fv~s--l~eL~~~i~~~~L 144 (256)
T 3pg7_A 76 TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWV-REYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQ 144 (256)
T ss_dssp HHHHHHTTTSSCHHHHHTEEEEEEESCCHHH-HHHHHHTHHHHTTTTTCTTEEEESS--TTGGGGTSCGGGC
T ss_pred HHHHHHHHHHcCHHHHhcccEEEEECCCHHH-HHHHHHHhccccccccCCcEEEECC--HHHHHhhcCHHHc
Confidence 6788999999999999999999999999999 6554 45677777788899999964 6899999987765
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.80 E-value=2.8e-09 Score=110.20 Aligned_cols=128 Identities=14% Similarity=0.180 Sum_probs=97.7
Q ss_pred ccCCCCCCcEEEEecCCCCcccccccccHHHHHHHHHHHHHHHHHhhcccchhhhcCCcCcEEEEEeCCCCCcCCcchHH
Q 007116 156 HGVDKEGRPVYIELLGKAHPSRLMRITTVDRYLKYHVQEFERALLERFPACSVAAKRRICSTTTILDVQGLGMKHFTRTA 235 (617)
Q Consensus 156 ~G~Dk~GRpV~i~rlg~~Dp~kl~~~~t~~~~ir~~v~~lE~~l~~~~p~cs~~~~~~i~g~tvIiDl~G~sl~~~~~~~ 235 (617)
.|.|++||||+++.+++++...+ +.+.++-+.+..++... -..+++|+|++|++..+-. .
T Consensus 35 ~g~d~dG~PViv~~~~~~~~~~~----D~e~Lly~il~tl~~~~--------------~~~y~lV~D~T~~~~~n~p--~ 94 (290)
T 3peg_A 35 AGTSKAGNPIFYYVARRFKTGQI----NGDLLIYHVLLTLKPYY--------------AKPYEIVVDLTHTGPSNRF--K 94 (290)
T ss_dssp EEECTTSCEEEEEEGGGCCBTTB----CHHHHHHHHHHHHTTTT--------------TSCEEEEEECTTCCGGGCC--C
T ss_pred eccCCCCCEEEEEEeecCCccCC----CHHHHHHHHHHHHHHhc--------------CCCeEEEEEcCCCCccCCC--h
Confidence 47899999999999999998766 77777766666655332 2478999999999987654 3
Q ss_pred HHHHHHHHHhcccccccccceEEEEeCChhHHHHHHHHHhhcCChhhhceeEEcCCCchhHHHccCCCCC
Q 007116 236 ANLLAAVAKVDNCYYPETLHQMFIVNAGPGFKKMLWPAAQKFLDPKSIAKIHVLEPKSLGKLLEVIDASQ 305 (617)
Q Consensus 236 ~~llk~i~kilq~~YPerL~~i~IINaP~~f~~~lw~lvKpFL~~ktr~KI~~~~~~~~~~L~e~Id~s~ 305 (617)
.+.++.+..++...|+..++++||+|++++|+..+|.+.++|.+.+...|+.++++ ...|..++++++
T Consensus 95 ~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~--~~~L~~~i~~~~ 162 (290)
T 3peg_A 95 TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQ 162 (290)
T ss_dssp HHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESS--SCC---------
T ss_pred HHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCC--HHHHHhhCCHHH
Confidence 67899999999999999999999999999994456677788888899999999864 355888888775
No 8
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=73.34 E-value=3.7 Score=28.06 Aligned_cols=16 Identities=31% Similarity=0.590 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhcCC
Q 007116 540 ERLQKLEKAYEELRHK 555 (617)
Q Consensus 540 kRl~eLE~k~~~L~~K 555 (617)
+||..||+||++|-.+
T Consensus 1 eRMnQLEdKvEeLl~~ 16 (34)
T 2bni_A 1 XRMKQIEDKLEEILSK 16 (34)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHc
Confidence 5899999999988543
No 9
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=70.29 E-value=5.3 Score=27.10 Aligned_cols=14 Identities=21% Similarity=0.477 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhcC
Q 007116 541 RLQKLEKAYEELRH 554 (617)
Q Consensus 541 Rl~eLE~k~~~L~~ 554 (617)
||..||+||++|-.
T Consensus 1 RMnQLEdKvEeLl~ 14 (33)
T 3c3g_A 1 RMKXIEXKLXEIXS 14 (33)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHH
Confidence 78889999988754
No 10
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=69.01 E-value=5.8 Score=27.09 Aligned_cols=30 Identities=30% Similarity=0.455 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhHHhh
Q 007116 540 ERLQKLEKAYEELRHKPAAIPLEKEQMLVESLQRIKSV 577 (617)
Q Consensus 540 kRl~eLE~k~~~L~~KP~~mP~EKEe~L~aa~~Ri~~l 577 (617)
+||..||+||++|-.+ |+ -|.+-+.|.++|
T Consensus 1 eRMnQLE~kVEeLl~~-------n~-~Le~eV~rLk~l 30 (34)
T 2oxj_A 1 XRMXQLEXKVXELLXK-------NX-HLEXEVXRLKXL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHH-------HH-HHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHh-------hh-hHHHHHHHHHHH
Confidence 5899999999888542 32 244445555543
No 11
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=68.94 E-value=1.4 Score=30.13 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhcCC
Q 007116 540 ERLQKLEKAYEELRHK 555 (617)
Q Consensus 540 kRl~eLE~k~~~L~~K 555 (617)
+||..||+||++|-++
T Consensus 1 ~RMnQLEdkVEeLl~~ 16 (34)
T 2hy6_A 1 MKVKQLADAVEELASA 16 (34)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHh
Confidence 5888999999887643
No 12
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=68.74 E-value=6.9 Score=26.68 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhcC
Q 007116 540 ERLQKLEKAYEELRH 554 (617)
Q Consensus 540 kRl~eLE~k~~~L~~ 554 (617)
+||..||+||++|-.
T Consensus 1 eRMnQLEdKVEeLl~ 15 (34)
T 3c3f_A 1 XRMXQIEXKLEXILS 15 (34)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHh
Confidence 589999999988754
No 13
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=67.93 E-value=7.4 Score=26.41 Aligned_cols=14 Identities=36% Similarity=0.508 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhcC
Q 007116 541 RLQKLEKAYEELRH 554 (617)
Q Consensus 541 Rl~eLE~k~~~L~~ 554 (617)
||..||+||++|-+
T Consensus 1 RMnQLEdKVEell~ 14 (33)
T 2wq1_A 1 RMKQLEDKIEENTS 14 (33)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHH
Confidence 78889999988754
No 14
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=66.70 E-value=5.8 Score=27.15 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhcC
Q 007116 540 ERLQKLEKAYEELRH 554 (617)
Q Consensus 540 kRl~eLE~k~~~L~~ 554 (617)
.||..||+||++|-.
T Consensus 1 ~RM~QLEdKVEeLl~ 15 (34)
T 1uo4_A 1 XRMKQIEDKGEEILS 15 (34)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH
Confidence 388899999988743
No 15
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=61.18 E-value=7.8 Score=26.37 Aligned_cols=14 Identities=43% Similarity=0.555 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhcC
Q 007116 541 RLQKLEKAYEELRH 554 (617)
Q Consensus 541 Rl~eLE~k~~~L~~ 554 (617)
||..||+||++|-.
T Consensus 1 RM~QLE~kVEeLl~ 14 (33)
T 3m48_A 1 RMAQLEAKVEELLS 14 (33)
T ss_dssp --CHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHH
Confidence 78889999988743
No 16
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=58.58 E-value=12 Score=25.88 Aligned_cols=14 Identities=29% Similarity=0.529 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhc
Q 007116 540 ERLQKLEKAYEELR 553 (617)
Q Consensus 540 kRl~eLE~k~~~L~ 553 (617)
+||..||.||++|-
T Consensus 1 eRMnQLE~kVEeLl 14 (36)
T 1kd8_A 1 XEVKQLEAEVEEIE 14 (36)
T ss_dssp -CCHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHH
Confidence 47788888887764
No 17
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=58.18 E-value=49 Score=27.41 Aligned_cols=67 Identities=19% Similarity=0.251 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCc----hhHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007116 540 ERLQKLEKAYEELRHKPAAIP----LEKEQMLVESLQRIKSVESDLEKTKKVLHATVVKQHEIAEALENLR 606 (617)
Q Consensus 540 kRl~eLE~k~~~L~~KP~~mP----~EKEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~El~~yie~~k 606 (617)
+|-.+|=+.|..|..-=|.+| ..|=.+|..|++=|+.|+.+...-..-...--.+|.+|..-|+.++
T Consensus 16 ~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 16 QRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 678888888888887766665 5799999999999999998877655555555566677776666543
No 18
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=55.60 E-value=44 Score=27.10 Aligned_cols=64 Identities=9% Similarity=0.226 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCc---hhHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007116 540 ERLQKLEKAYEELRHKPAAIP---LEKEQMLVESLQRIKSVESDLEKTKKVLHATVVKQHEIAEALE 603 (617)
Q Consensus 540 kRl~eLE~k~~~L~~KP~~mP---~EKEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~El~~yie 603 (617)
+|...|=+.+..|..=-|..| ..|-.+|..|++=|+.|+.+...-+.-+.+.-..+.+|-+-|.
T Consensus 12 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 12 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888877644332 3899999999999999998877766555554444455544443
No 19
>3a8y_C BAG family molecular chaperone regulator 5; BAG domain, HSP70, ATPase domain, protein complex, triple helix, structural genomics, NPPSFA; 2.30A {Homo sapiens}
Probab=54.15 E-value=27 Score=31.67 Aligned_cols=67 Identities=15% Similarity=0.221 Sum_probs=52.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCCCCCCchhHH-----HHHHHHHHhHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 007116 533 DLVVPCIERLQKLEKAYEELRHKPAAIPLEKE-----QMLVESLQRIKSVESD----LEKTKKVLHATVVKQHEIAEALE 603 (617)
Q Consensus 533 ~~~~~~~kRl~eLE~k~~~L~~KP~~mP~EKE-----e~L~aa~~Ri~~lE~e----L~~TKKaL~~tl~kQ~El~~yie 603 (617)
..+..+..++++|+.+|+....| +.||| |||.--+=+.|+||.+ +-..+|+ ++-+=.-++++||
T Consensus 34 ~aI~~V~~eVd~L~~eV~~F~G~----~~dkey~~L~E~L~k~LLKLD~IdteGd~~vR~aRK~---aVk~VQ~~Le~LD 106 (142)
T 3a8y_C 34 KAVWNVLGNLSEIQGEVLSFDGN----RTDKNYIRLEELLTKQLLALDAVDPQGEEKCKAARKQ---AVRLAQNILSYLD 106 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSC----TTSHHHHHHHHHHHHHHHHHHTCCCTTCHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHH---HHHHHHHHHHHHH
Confidence 36788999999999999999777 56774 7999999999999887 4444544 4555566788888
Q ss_pred HHh
Q 007116 604 NLR 606 (617)
Q Consensus 604 ~~k 606 (617)
.+.
T Consensus 107 ~k~ 109 (142)
T 3a8y_C 107 LKS 109 (142)
T ss_dssp HHH
T ss_pred Hhh
Confidence 765
No 20
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=53.07 E-value=24 Score=24.40 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhcCC
Q 007116 540 ERLQKLEKAYEELRHK 555 (617)
Q Consensus 540 kRl~eLE~k~~~L~~K 555 (617)
+||..||+||++|-.+
T Consensus 1 eRMnQLE~KVEeLl~~ 16 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSK 16 (36)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH
Confidence 5888999999887543
No 21
>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1
Probab=49.54 E-value=35 Score=29.17 Aligned_cols=69 Identities=14% Similarity=0.208 Sum_probs=47.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCCCCCCchhH-----HHHHHHHHHhHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 007116 533 DLVVPCIERLQKLEKAYEELRHKPAAIPLEK-----EQMLVESLQRIKSVESDLEKT-KKVLHATVVKQHEIAEALENL 605 (617)
Q Consensus 533 ~~~~~~~kRl~eLE~k~~~L~~KP~~mP~EK-----Ee~L~aa~~Ri~~lE~eL~~T-KKaL~~tl~kQ~El~~yie~~ 605 (617)
..+..+...+.+|+..|+....|+. || +|||.--+=.+|+||.|=..+ +-+=.+++-+=.-++++||.+
T Consensus 18 ~kI~~I~~ev~~L~~~V~~f~g~k~----dkey~~L~E~L~k~LLkLD~IeteG~~~iR~~RK~~Vk~iQ~~l~~LD~k 92 (99)
T 1ugo_A 18 SRLQEIQREVKAIEPQVVGFSGLSD----DKNYKRLERILTKQLFEIDSVDTEGKGDIQQARKRAAQETERLLKELEQN 92 (99)
T ss_dssp HHHHHHHHHHHHSHHHHHTCCCCTT----SSHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCch----hHHHHHHHHHHHHHHHHHcCcCcCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3678888999999999999988873 55 488888899999998773321 222223333334566666653
No 22
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=49.47 E-value=24 Score=24.16 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhcCC
Q 007116 540 ERLQKLEKAYEELRHK 555 (617)
Q Consensus 540 kRl~eLE~k~~~L~~K 555 (617)
+||..||.||++|-+|
T Consensus 1 ~RMnQledKvEel~~~ 16 (34)
T 2r2v_A 1 MKLKQVADKLEEVASK 16 (34)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH
Confidence 4888999999888654
No 23
>1m62_A BAG-family molecular chaperone regulator-4; BAG domain, SODD, silencer of death domains, HSP70/HSC70 CO-chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=46.54 E-value=61 Score=26.98 Aligned_cols=66 Identities=32% Similarity=0.451 Sum_probs=48.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcCCCCCCchhHH-----HHHHHHHHhHHhhHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 007116 532 EDLVVPCIERLQKLEKAYEELRHKPAAIPLEKE-----QMLVESLQRIKSVESD----LEKTKKVLHATVVKQHEIAEAL 602 (617)
Q Consensus 532 ~~~~~~~~kRl~eLE~k~~~L~~KP~~mP~EKE-----e~L~aa~~Ri~~lE~e----L~~TKKaL~~tl~kQ~El~~yi 602 (617)
-.-+..+...+.+|+..|+....| +.||| |||.--+=.+|++|.| +-..+|+. +-+=.-++++|
T Consensus 10 ~~~I~~I~~ev~~L~~~V~~f~g~----~~dkey~~L~E~L~k~LLkLD~Ie~eG~~~~R~~RK~~---Vk~iQ~~l~~L 82 (87)
T 1m62_A 10 IKKIIHVLEKVQYLEQEVEEFVGK----KTDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEA---VCKIQAILEKL 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCC----TTSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC----cchHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHH---HHHHHHHHHHH
Confidence 346788899999999999999987 46674 7899999999999887 55555543 33334455666
Q ss_pred HH
Q 007116 603 EN 604 (617)
Q Consensus 603 e~ 604 (617)
|.
T Consensus 83 D~ 84 (87)
T 1m62_A 83 EK 84 (87)
T ss_dssp HH
T ss_pred Hh
Confidence 55
No 24
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=39.25 E-value=28 Score=26.79 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 007116 76 ESAVLELRQKLLERDLLPPRQDDYHTLLRFLKAREFNIERTIQMWEE 122 (617)
Q Consensus 76 ~~aL~eLR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~~ 122 (617)
++.|++|++.. |. .|. ..+-.-|++++.|++.|..+|-+
T Consensus 10 ee~l~~L~emF------P~-ld~-~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 10 EEDLKAIQDMF------PN-MDQ-EVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHHHHHHHC------SS-SCH-HHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHC------CC-CCH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 35677777765 33 344 58999999999999999999865
No 25
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=38.01 E-value=1e+02 Score=24.90 Aligned_cols=60 Identities=18% Similarity=0.212 Sum_probs=43.1
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH
Q 007116 534 LVVPCIERLQKLEKAYEELRHKPAAIPLEKEQMLVESLQRIKSVESDLEKTKKVLHATVVKQHE 597 (617)
Q Consensus 534 ~~~~~~kRl~eLE~k~~~L~~KP~~mP~EKEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~E 597 (617)
+.-....|+..+|.++.....+- ...|+-+.+=-.||..||.||+++.-.|.++..+-++
T Consensus 14 e~d~a~~~~~~~e~~l~~~e~~~----~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 14 DKENALDRAEQAEADKKAAEERS----KQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777766655432 3456667777789999999999999999888777544
No 26
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=37.71 E-value=1.3e+02 Score=22.58 Aligned_cols=46 Identities=13% Similarity=0.158 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007116 563 KEQMLVESLQRIKSVESDLEKTKKVLHATVVKQHEIAEALENLRQS 608 (617)
Q Consensus 563 KEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~El~~yie~~k~~ 608 (617)
.++-+...=.+++.++.++..+|..|..+...+..+.+.|.+++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556788899999999999999999999999999888643
No 27
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.51 E-value=83 Score=24.63 Aligned_cols=42 Identities=14% Similarity=0.190 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 007116 72 DEREESAVLELRQKLLERDLLPPRQDDYHTLLRFLKAREFNIERTIQMWE 121 (617)
Q Consensus 72 d~~e~~aL~eLR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~ 121 (617)
...+...|.+|...-. ..|......||..++||++.|...+-
T Consensus 15 s~~~~e~i~qF~~ITg--------~~d~~~A~~~Le~~~WnLe~Av~~ff 56 (67)
T 2dam_A 15 TQEQTEKLLQFQDLTG--------IESMDQCRHTLEQHNWNIEAAVQDRL 56 (67)
T ss_dssp CHHHHHHHHHHHHHHC--------CSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHhC--------CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4556778888887652 13446889999999999999987653
No 28
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=35.92 E-value=74 Score=27.70 Aligned_cols=68 Identities=26% Similarity=0.358 Sum_probs=49.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcCCCCCCchhHH-----HHHHHHHHhHHhhHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 007116 532 EDLVVPCIERLQKLEKAYEELRHKPAAIPLEKE-----QMLVESLQRIKSVESD----LEKTKKVLHATVVKQHEIAEAL 602 (617)
Q Consensus 532 ~~~~~~~~kRl~eLE~k~~~L~~KP~~mP~EKE-----e~L~aa~~Ri~~lE~e----L~~TKKaL~~tl~kQ~El~~yi 602 (617)
-..+..+...+.+|+..|+....++ .||| |||.--+=.+|+||.| +-..+|+ ++-+=.-++++|
T Consensus 29 ~~~I~~I~~eV~~L~~qV~~f~g~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~aRK~---aVk~iQ~~l~~L 101 (111)
T 1uk5_A 29 VLKVEAILEKVQGLEQAVDSFEGKK----TDKKYLMIEEYLTKELLALDSVDPEGRADVRQARRD---GVRKVQTILEKL 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSCS----SSHHHHHHHHHHHHHHHHHHSCCCSSCHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCc----chHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHH---HHHHHHHHHHHH
Confidence 3467788888899999999998876 6674 7899999999999987 4444444 343445566677
Q ss_pred HHHh
Q 007116 603 ENLR 606 (617)
Q Consensus 603 e~~k 606 (617)
|.+.
T Consensus 102 D~k~ 105 (111)
T 1uk5_A 102 EQKA 105 (111)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 6643
No 29
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.19 E-value=52 Score=26.01 Aligned_cols=44 Identities=16% Similarity=0.136 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 007116 72 DEREESAVLELRQKLLERDLLPPRQDDYHTLLRFLKAREFNIERTIQMWEEM 123 (617)
Q Consensus 72 d~~e~~aL~eLR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~~~ 123 (617)
..+..+++++|++.. | . .|. ..+..-|++++.|++.|.+.|..+
T Consensus 15 ~~~~~~~v~~L~~MF---P---~-lD~-~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 15 RLEFNQAMDDFKTMF---P---N-MDY-DIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCCSHHHHHHHHHHC---S---S-SCH-HHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHC---C---C-CCH-HHHHHHHHHcCCCHHHHHHHHHhc
Confidence 344467888888876 3 2 333 588899999999999999988664
No 30
>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=34.78 E-value=31 Score=29.73 Aligned_cols=41 Identities=29% Similarity=0.366 Sum_probs=32.2
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 007116 572 QRIKSVESDLEKTKKVLHATVVKQHEIAEALENLRQSKFHQ 612 (617)
Q Consensus 572 ~Ri~~lE~eL~~TKKaL~~tl~kQ~El~~yie~~k~~k~~~ 612 (617)
-||-+|.-||--|||.|+.|-..--|--|-|.++-++.|+.
T Consensus 95 iritslqgdltftkkclenarsqisekdakinklmekdfqv 135 (142)
T 1pl5_A 95 IRITSLQGDLTFTKKCLENARSQISEKDAKINKLMEKDFQV 135 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred eeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHHHHHhhhc
Confidence 48999999999999999999888888888888887777765
No 31
>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=34.38 E-value=94 Score=26.48 Aligned_cols=68 Identities=31% Similarity=0.434 Sum_probs=49.4
Q ss_pred cchhhhhHHHHHHHHHHHHHHHhcCCCCCCchhHH-----HHHHHHHHhHHhhHHH----HHHHHHHHHHHHHHHHHHHH
Q 007116 530 NEEDLVVPCIERLQKLEKAYEELRHKPAAIPLEKE-----QMLVESLQRIKSVESD----LEKTKKVLHATVVKQHEIAE 600 (617)
Q Consensus 530 ~~~~~~~~~~kRl~eLE~k~~~L~~KP~~mP~EKE-----e~L~aa~~Ri~~lE~e----L~~TKKaL~~tl~kQ~El~~ 600 (617)
..-.-+..+...+.+|+..|+.+..++ .||| |||.--+=.+|+||.| +-..+|++ +-+=.-+++
T Consensus 21 ~~~~kI~~I~~ev~~L~~~V~~f~G~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~~RK~~---Vk~iQ~~l~ 93 (99)
T 1m7k_A 21 PSIKKIIHVLEKVQYLEQEVEEFVGKK----TDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEA---VCKIQAILE 93 (99)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCSCT----TSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHH---HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCc----hHHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHH---HHHHHHHHH
Confidence 334468899999999999999999874 5664 7899999999999887 44455543 333344556
Q ss_pred HHHH
Q 007116 601 ALEN 604 (617)
Q Consensus 601 yie~ 604 (617)
+||.
T Consensus 94 ~LD~ 97 (99)
T 1m7k_A 94 KLEK 97 (99)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 32
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=32.27 E-value=1.4e+02 Score=30.56 Aligned_cols=65 Identities=8% Similarity=0.065 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCCCCCCchh-----HHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Q 007116 542 LQKLEKAYEELRHKPAAIPLE-----KEQMLVESLQRIKSVESDLEKTKKVLHATVVK-QHEIAEALENLR 606 (617)
Q Consensus 542 l~eLE~k~~~L~~KP~~mP~E-----KEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~k-Q~El~~yie~~k 606 (617)
.+++.+-+..+.-....+|.. =.++|..--.|+..|+.+|..+++.|.+-+.+ ...|.++.+...
T Consensus 198 ~~~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~ 268 (357)
T 3rrk_A 198 LEAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAK 268 (357)
T ss_dssp HHHHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677788888888889853 35788888899999999999999999998888 666776666554
No 33
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=32.16 E-value=1e+02 Score=27.14 Aligned_cols=73 Identities=25% Similarity=0.326 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCch--------------hHHHHHHHHHHhHHhhH----------------HHHHHHH
Q 007116 536 VPCIERLQKLEKAYEELRHKPAAIPL--------------EKEQMLVESLQRIKSVE----------------SDLEKTK 585 (617)
Q Consensus 536 ~~~~kRl~eLE~k~~~L~~KP~~mP~--------------EKEe~L~aa~~Ri~~lE----------------~eL~~TK 585 (617)
.+++-||..||..+..|..+-.++-. +.++|.+.--.|+.-|+ .++.+.+
T Consensus 5 ~~i~~~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~ 84 (119)
T 3etw_A 5 ASLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDAL 84 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 45666777777777776665444332 23344444445555554 3678889
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 007116 586 KVLHATVVKQHEIAEALENLRQS 608 (617)
Q Consensus 586 KaL~~tl~kQ~El~~yie~~k~~ 608 (617)
|.|++-+.+|++++.+.|..+.-
T Consensus 85 keLd~~ik~qekiIdnFE~ik~l 107 (119)
T 3etw_A 85 KKLEAEMEQQKAVISDFEKIQAL 107 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987753
No 34
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=32.13 E-value=69 Score=22.61 Aligned_cols=37 Identities=11% Similarity=0.214 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q 007116 75 EESAVLELRQKLLERDLLPPRQDDYHTLLRFLKAREFNIERTIQMW 120 (617)
Q Consensus 75 e~~aL~eLR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L 120 (617)
+...|.+|...- + .+......||.+++||++.|...+
T Consensus 5 ~~~~i~~F~~iT---g------~~~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 5 RQDALREFVAVT---G------AEEDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp HHHHHHHHHHHT---C------CCHHHHHHHHHHTTSCSHHHHHHH
T ss_pred HHHHHHHHHHHh---C------cCHHHHHHHHHHcCCCHHHHHHHH
Confidence 445677777543 1 234588999999999999998765
No 35
>1nyh_A Regulatory protein SIR4; coiled-coil, transcription regulation, repressor, transcript repressor; 3.10A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=31.24 E-value=37 Score=29.92 Aligned_cols=41 Identities=29% Similarity=0.366 Sum_probs=32.3
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 007116 572 QRIKSVESDLEKTKKVLHATVVKQHEIAEALENLRQSKFHQ 612 (617)
Q Consensus 572 ~Ri~~lE~eL~~TKKaL~~tl~kQ~El~~yie~~k~~k~~~ 612 (617)
-||-+|.-||--|||.|+.|-..--|--|-|.++-++.|+.
T Consensus 119 iritslqgdltftkkclenarsqisekdakinklmekdfqv 159 (166)
T 1nyh_A 119 IRITSLQGDLTFTKKCLENARSQISEKDAKINKLMEKDFQV 159 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-----
T ss_pred eeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHHHHHhhcc
Confidence 48999999999999999999888888888888887777765
No 36
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=30.96 E-value=2.8e+02 Score=25.24 Aligned_cols=69 Identities=17% Similarity=0.287 Sum_probs=52.5
Q ss_pred cchhhhhHHHHHH--------HHHHHHHHHhcCCCCCCchhHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007116 530 NEEDLVVPCIERL--------QKLEKAYEELRHKPAAIPLEKEQMLVESLQRIKSVESDLEKTKKVLHATVVKQHEIAEA 601 (617)
Q Consensus 530 ~~~~~~~~~~kRl--------~eLE~k~~~L~~KP~~mP~EKEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~El~~y 601 (617)
.+.+.|..-+++| +..|.-++.| |..=-.|.|+ +.||+.||.|+...-+-|.+++.+=+++++-
T Consensus 50 ~~~~~f~~~~~ela~dli~kakqIe~LIdsL---Pg~~~seeeQ-----~~ri~~Le~E~~~~~~el~~~v~eae~ll~~ 121 (151)
T 1yke_B 50 VPPEEFSNTIDELSTDIILKTRQINKLIDSL---PGVDVSAEEQ-----LRKIDMLQKKLVEVEDEKIEAIKKKEKLLRH 121 (151)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---TTSSSCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777776 6677777666 3332355554 5899999999999999999999999999998
Q ss_pred HHHHh
Q 007116 602 LENLR 606 (617)
Q Consensus 602 ie~~k 606 (617)
|+..-
T Consensus 122 v~~~l 126 (151)
T 1yke_B 122 VDSLI 126 (151)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 37
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.53 E-value=1e+02 Score=23.63 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q 007116 72 DEREESAVLELRQKLLERDLLPPRQDDYHTLLRFLKAREFNIERTIQMW 120 (617)
Q Consensus 72 d~~e~~aL~eLR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L 120 (617)
...+.+.|.+|...-. .+......||.+++||++.|...+
T Consensus 12 s~~~~e~i~qF~~iTg---------~~~~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 12 SSALKGLIQQFTTITG---------ASESVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp CHHHHHHHHHHHHHTC---------CCHHHHHHHHHTTTSCHHHHHHHH
T ss_pred CccHHHHHHHHHHHhC---------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3555667888876531 223588999999999999998765
No 38
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=29.29 E-value=37 Score=24.35 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhc
Q 007116 538 CIERLQKLEKAYEELR 553 (617)
Q Consensus 538 ~~kRl~eLE~k~~~L~ 553 (617)
+=.|.+|||+++..|+
T Consensus 15 le~~naeLEervstLq 30 (42)
T 2oqq_A 15 LENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345555555555554
No 39
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=26.52 E-value=3.8e+02 Score=24.65 Aligned_cols=67 Identities=10% Similarity=0.122 Sum_probs=50.1
Q ss_pred cchhhhhHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007116 530 NEEDLVVPCIERLQKLEKAYEELRHKPAAIPLEKEQMLVESLQRIKSVESDLEKTKKVLHATVVKQHEIAEALENLRQSK 609 (617)
Q Consensus 530 ~~~~~~~~~~kRl~eLE~k~~~L~~KP~~mP~EKEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~El~~yie~~k~~k 609 (617)
.+.+++...+++|++|...+..+ |..+|+.+.||+.=.+.. .+..+...---|..|.+|.+..+..-
T Consensus 13 ~~~~~~~~alr~ia~l~r~~~~i-----------~~~~n~eI~~ik~~~~~~--~~~l~~~i~~l~~~l~~y~e~~r~el 79 (171)
T 2p2u_A 13 ADIRQAEGALAEIATIDRKVGEI-----------EAQMNEAIDAAKARASQK--SAPLLARRKELEDGVATFATLNKTEM 79 (171)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 67778999999999999999876 456788888888654443 33445555566788889998886543
No 40
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=26.22 E-value=86 Score=25.88 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 007116 76 ESAVLELRQKLLERDLLPPRQDDYHTLLRFLKAREFNIERTIQMWEEM 123 (617)
Q Consensus 76 ~~aL~eLR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~~~ 123 (617)
..+|+++|..|-. - ..| ..|.+=....+||+++|...+-+-
T Consensus 35 ~SCLd~iR~VlGd--s----V~e-~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 35 YSCLDHMREVLGD--A----VPD-DILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHHTTT--T----SCH-HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc--c----CCH-HHHHHHHHHhcCCHHHHHHHHHhc
Confidence 5789999998832 2 334 588899999999999999887653
No 41
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=25.90 E-value=88 Score=26.58 Aligned_cols=45 Identities=20% Similarity=0.392 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchh----HHHHHHHHHHhHHhhHHHHHH
Q 007116 539 IERLQKLEKAYEELRHKPAAIPLE----KEQMLVESLQRIKSVESDLEK 583 (617)
Q Consensus 539 ~kRl~eLE~k~~~L~~KP~~mP~E----KEe~L~aa~~Ri~~lE~eL~~ 583 (617)
..||..|-+-++.|...-|.+|++ |=|.|..|++-|..|..-|..
T Consensus 34 r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 34 MSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 469999999999999998889988 789999999999999887764
No 42
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=23.82 E-value=1.3e+02 Score=24.11 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 007116 72 DEREESAVLELRQKLLERDLLPPRQDDYHTLLRFLKAREFNIERTIQMWEE 122 (617)
Q Consensus 72 d~~e~~aL~eLR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~~ 122 (617)
..+-...|.++++.+ |+ ..+ .|+.+.|..+++|+|.+...|-+
T Consensus 10 ~~~l~s~I~qV~DLf------Pd-LG~-gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 10 GVELDSLISQVKDLL------PD-LGE-GFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp SHHHHHHHHHHHHHC------CS-SCH-HHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc------cc-CCH-HHHHHHHHHhCCCHHHHHHHHHc
Confidence 445567788888776 33 345 59999999999999999988754
No 43
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=23.80 E-value=90 Score=23.92 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCch----hHHHHHHHHHHhHHhhHHHHH
Q 007116 540 ERLQKLEKAYEELRHKPAAIPL----EKEQMLVESLQRIKSVESDLE 582 (617)
Q Consensus 540 kRl~eLE~k~~~L~~KP~~mP~----EKEe~L~aa~~Ri~~lE~eL~ 582 (617)
+|+..|-+-|..|..--|.+|. -|=+.|..|++=|..|+.-|+
T Consensus 12 ~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 12 NRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999998887875 478999999999999987664
No 44
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=23.54 E-value=1.4e+02 Score=25.12 Aligned_cols=57 Identities=12% Similarity=0.163 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH
Q 007116 537 PCIERLQKLEKAYEELRHKPAAIPLEKEQMLVESLQRIKSVESDLEKTKKVLHATVVKQHE 597 (617)
Q Consensus 537 ~~~kRl~eLE~k~~~L~~KP~~mP~EKEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~E 597 (617)
..+.|...+|.++..+..+- ..+|+=+.+=-.|+..||.||+.+...|.++..+-++
T Consensus 20 ~a~drae~~e~~~k~~e~~~----~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 20 NALDRAEQAEADKKAAEERS----KQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666654442 2466666666688999999999998888888666444
No 45
>3hf0_A GCN4-PLI SIDE chain sequence on AN (alpha-alpha- beta-alpha-beta-alpha-beta) backbone...; helix bundle, foldamer, alpha/beta-peptide, coiled coil; HET: BIL XCP B3Y XPC 16A; 2.10A {Synthetic}
Probab=23.52 E-value=1.4e+02 Score=19.65 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 007116 563 KEQMLVESLQRIKSVESDLEKTKKVLHA 590 (617)
Q Consensus 563 KEe~L~aa~~Ri~~lE~eL~~TKKaL~~ 590 (617)
.|.-|.+.+....-.|.||...|..|.+
T Consensus 6 ~e~kl~e~l~kl~h~e~el~r~k~ll~e 33 (34)
T 3hf0_A 6 XEXKLXEXLXKLXHXEXELXRXKXLLXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 4566788888999999999999988865
No 46
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=22.34 E-value=60 Score=23.10 Aligned_cols=19 Identities=26% Similarity=0.573 Sum_probs=17.1
Q ss_pred HHHHhHHhhHHHHHHHHHH
Q 007116 569 ESLQRIKSVESDLEKTKKV 587 (617)
Q Consensus 569 aa~~Ri~~lE~eL~~TKKa 587 (617)
+|++|.+.+|+++-.++|.
T Consensus 21 ~A~drAe~~E~~~k~~~~~ 39 (40)
T 2z5i_I 21 NALDRAEQLENEVARLKKL 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHhhcc
Confidence 7899999999999998874
No 47
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=22.00 E-value=1.1e+02 Score=24.61 Aligned_cols=48 Identities=13% Similarity=0.283 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCc---hhHHHHHHHHHHhHHhhHHHHHHHHH
Q 007116 539 IERLQKLEKAYEELRHKPAAIP---LEKEQMLVESLQRIKSVESDLEKTKK 586 (617)
Q Consensus 539 ~kRl~eLE~k~~~L~~KP~~mP---~EKEe~L~aa~~Ri~~lE~eL~~TKK 586 (617)
=+|...|=+.|..|..--|.+| ..|=.+|..|++=|+.|+.++..-+.
T Consensus 21 r~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~ 71 (80)
T 1hlo_A 21 RKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777777776544443 47999999999999999987765443
No 48
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=21.71 E-value=97 Score=21.73 Aligned_cols=37 Identities=27% Similarity=0.346 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhHHhhHHHHHHHH
Q 007116 538 CIERLQKLEKAYEELRHKPAAIPLEKEQMLVESLQRIKSVESDLEKTK 585 (617)
Q Consensus 538 ~~kRl~eLE~k~~~L~~KP~~mP~EKEe~L~aa~~Ri~~lE~eL~~TK 585 (617)
+-.-+||||+.-.+|.+ =||.+--|- -.||+||.+-|
T Consensus 8 lknyiqeleernaelkn-------lkehlkfak----aelefelaahk 44 (46)
T 3he4_B 8 LKNYIQELEERNAELKN-------LKEHLKFAK----AELEFELAAHK 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHH----HHHHHHHHHTT
T ss_pred HHHHHHHHHHHhHHHHh-------HHHHHHHHH----HHHHHHHHhhc
Confidence 33457888888777654 244433221 24788887654
No 49
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=21.64 E-value=3.1e+02 Score=21.90 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhHHhhHHHHHHHH
Q 007116 536 VPCIERLQKLEKAYEELRHKPAAIPLEKEQMLVESLQRIKSVESDLEKTK 585 (617)
Q Consensus 536 ~~~~kRl~eLE~k~~~L~~KP~~mP~EKEe~L~aa~~Ri~~lE~eL~~TK 585 (617)
..+.+||+++|.+=..|. .||..||.+|+.++
T Consensus 3 ~~~~~kLq~~E~~N~~Le------------------~~v~~le~~Le~s~ 34 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLE------------------GQLSEMEQRLEKSQ 34 (72)
T ss_dssp CHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHH------------------HHHHHHHHHHHHHH
Confidence 356788888888777664 46778888887776
No 50
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=21.51 E-value=1.2e+02 Score=25.66 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCCCCC--chhHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q 007116 545 LEKAYEELRHKPAAI--PLEKEQMLVESLQRIKSVESDLEKTKKVLHAT 591 (617)
Q Consensus 545 LE~k~~~L~~KP~~m--P~EKEe~L~aa~~Ri~~lE~eL~~TKKaL~~t 591 (617)
|+++..+....|. | |.--|.-|+++-.+|+.|+.+|-+-...|.++
T Consensus 41 l~Km~~vY~~nP~-~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 41 LKKMKDVYEKTPQ-MGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHHCGG-GCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666665 6 77779999999999999999999988888776
No 51
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=20.14 E-value=49 Score=22.58 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHhcCC
Q 007116 536 VPCIERLQKLEKAYEELRHK 555 (617)
Q Consensus 536 ~~~~kRl~eLE~k~~~L~~K 555 (617)
.+++-||-++|++|..+..|
T Consensus 6 ~Sm~~Rl~kVE~qv~~md~K 25 (33)
T 2ovc_A 6 ISMMGRVVKVEKQVQSIEHK 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 67889999999999888665
Done!