Your job contains 1 sequence.
>007117
MIMIVCFMATPATQEIVETSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGT
RWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPE
LEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSS
ASDASGRLVWIPFVEEIVPIVDMNGREMQITPPKGLLELNLRTDERSKKERRQLEWKERK
KFQKRLIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSK
RWNATELMNATKAELMISSLKISGEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVL
VVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQ
MLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGV
FSLLSSHNIIKNLDELGVEYIQICTANPRNAIGNSMFLGFVKSCGADIGFQISEYAKHSE
ERFNTMLSMNVMKKLTNHINKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYS
CLNACSLDKVCVMEITE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007117
(617 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2151461 - symbol:AT5G46420 species:3702 "Arabi... 1066 8.1e-108 1
UNIPROTKB|Q81WJ5 - symbol:rimM "Ribosome maturation facto... 209 5.7e-18 2
TIGR_CMR|BA_3980 - symbol:BA_3980 "16S rRNA processing pr... 209 5.7e-18 2
UNIPROTKB|Q71YM3 - symbol:rimM "Ribosome maturation facto... 182 5.3e-16 2
UNIPROTKB|P66653 - symbol:rimM "Ribosome maturation facto... 141 4.5e-13 2
UNIPROTKB|Q47WU9 - symbol:rimM "Ribosome maturation facto... 180 6.5e-13 1
TIGR_CMR|CPS_4068 - symbol:CPS_4068 "16S rRNA processing ... 180 6.5e-13 1
UNIPROTKB|Q5LNF0 - symbol:rimM "Ribosome maturation facto... 130 6.7e-12 2
TIGR_CMR|SPO_3255 - symbol:SPO_3255 "16S rRNA processing ... 130 6.7e-12 2
UNIPROTKB|Q60BS2 - symbol:rimM "Ribosome maturation facto... 167 1.6e-11 1
UNIPROTKB|Q9KUF9 - symbol:rimM "Ribosome maturation facto... 156 2.5e-10 1
TIGR_CMR|VC_0562 - symbol:VC_0562 "16S rRNA processing pr... 156 2.5e-10 1
UNIPROTKB|P0A7X6 - symbol:rimM species:83333 "Escherichia... 145 3.7e-09 1
UNIPROTKB|Q8EH71 - symbol:rimM "Ribosome maturation facto... 135 4.5e-08 1
TIGR_CMR|SO_1358 - symbol:SO_1358 "16S rRNA processing pr... 135 4.5e-08 1
UNIPROTKB|Q3AC71 - symbol:rimM "Ribosome maturation facto... 128 2.5e-07 1
TIGR_CMR|CHY_1431 - symbol:CHY_1431 "16S rRNA processing ... 128 2.5e-07 1
UNIPROTKB|Q2GI96 - symbol:rimM "Ribosome maturation facto... 123 3.1e-07 2
TIGR_CMR|ECH_0002 - symbol:ECH_0002 "16S rRNA processing ... 123 3.1e-07 2
UNIPROTKB|Q2GIL4 - symbol:rimM "Ribosome maturation facto... 111 7.7e-07 2
TIGR_CMR|APH_1268 - symbol:APH_1268 "16S rRNA processing ... 111 7.7e-07 2
UNIPROTKB|Q2GES2 - symbol:rimM "Ribosome maturation facto... 107 3.1e-05 2
TIGR_CMR|NSE_0124 - symbol:NSE_0124 "putative 16S rRNA pr... 107 3.1e-05 2
TIGR_CMR|CBU_0444 - symbol:CBU_0444 "16S rRNA processing ... 116 4.9e-05 1
UNIPROTKB|Q74FG4 - symbol:rimM "Ribosome maturation facto... 86 6.6e-05 2
TIGR_CMR|GSU_0645 - symbol:GSU_0645 "16S rRNA processing ... 86 6.6e-05 2
ZFIN|ZDB-GENE-030131-1233 - symbol:uap1 "UDP-N-acteylgluc... 123 0.00029 1
UNIPROTKB|G3N337 - symbol:UAP1L1 "Uncharacterized protein... 122 0.00072 3
>TAIR|locus:2151461 [details] [associations]
symbol:AT5G46420 species:3702 "Arabidopsis thaliana"
[GO:0005840 "ribosome" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA;ISS] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=ISS] [GO:0043022 "ribosome binding"
evidence=IEA] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0010267 "production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0019252 "starch biosynthetic process"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0043085 "positive regulation
of catalytic activity" evidence=RCA] [GO:0051607 "defense response
to virus" evidence=RCA] HAMAP:MF_00014 InterPro:IPR002618
InterPro:IPR002676 InterPro:IPR011961 Pfam:PF01782 EMBL:CP002688
GO:GO:0009507 EMBL:AB019223 GO:GO:0005840 GO:GO:0043022
GO:GO:0006364 InterPro:IPR011033 SUPFAM:SSF50346 InterPro:IPR009000
SUPFAM:SSF50447 GO:GO:0016779 Gene3D:2.40.30.60 TIGRFAMs:TIGR02273
PANTHER:PTHR11952 UniGene:At.21181 IPI:IPI00526784
RefSeq:NP_568663.2 UniGene:At.9533 ProteinModelPortal:Q9FHG3
SMR:Q9FHG3 IntAct:Q9FHG3 STRING:Q9FHG3 PRIDE:Q9FHG3
EnsemblPlants:AT5G46420.1 GeneID:834685 KEGG:ath:AT5G46420
TAIR:At5g46420 HOGENOM:HOG000241592 InParanoid:Q9FHG3 OMA:SKPGRRW
PhylomeDB:Q9FHG3 ProtClustDB:CLSN2681089 Genevestigator:Q9FHG3
Uniprot:Q9FHG3
Length = 653
Score = 1066 (380.3 bits), Expect = 8.1e-108, P = 8.1e-108
Identities = 215/368 (58%), Positives = 276/368 (75%)
Query: 12 ATQEIVETSA-SGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGR 70
AT E VETS+ SGLD V+VG++ VHGLQGEI +KP+TDFP+LRF+ PG RWL+QQ+LG+
Sbjct: 65 ATDEAVETSSNSGLDLVEVGFLSGVHGLQGEICIKPNTDFPDLRFSKPGRRWLKQQLLGQ 124
Query: 71 ETIREVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRD 130
+ I EV+L++GR HP QKSWIL F G+D V+Q R LVG+TLLA + DRPEL++GEFY+RD
Sbjct: 125 DKIDEVELVEGRPHPAQKSWILKFRGLDDVDQVRQLVGATLLAEDDDRPELDEGEFYSRD 184
Query: 131 LVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIXXXXXXXXXXXXXXXRLVW 190
LVGMRV++KETG+LVGTV N+F++G NDLLHV+ SS+ V +LVW
Sbjct: 185 LVGMRVLLKETGQLVGTVANIFDNGGNDLLHVLLDSSMEVCNGNAKTN--------QLVW 236
Query: 191 IPFVEEIVPIVDMNGREMQITPPKGLLELNLRTDERSKKERRQLEWKERKKFQKRLIAAK 250
IPFV+ IVP VD+ +EM ITPPKGLLE+N+R D+RSKKERRQLEWKERKK QKRLIAAK
Sbjct: 237 IPFVDAIVPDVDLERKEMYITPPKGLLEVNMRADDRSKKERRQLEWKERKKQQKRLIAAK 296
Query: 251 KKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNATELMNA 310
KKL EMEQ+HVF G RFGEK Q +LLA+HI+ +NS LLQ+ALQ+I+ SKRWN TE +NA
Sbjct: 297 KKLCEMEQKHVFDGLRFGEKSQRNLLADHILNVNSTLLQKALQSIDTSSKRWNVTEEINA 356
Query: 311 TKAELMISSLKISGEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEGNE 370
+A + +L +S E L A + + N S ++G +L SEGK ++ LV+++ E
Sbjct: 357 LRARVSECNLSVSRE-CLSFDASKENMGDNFSFLQQGQNLFSEGKVSICLVLNDHENEEP 415
Query: 371 CDPHSVVS 378
+ VVS
Sbjct: 416 EGENGVVS 423
Score = 998 (356.4 bits), Expect = 1.3e-100, P = 1.3e-100
Identities = 213/436 (48%), Positives = 288/436 (66%)
Query: 187 RLVWIPFVEEIVPIVDMNGREMQITPPKGLLELNLRTDERSKKERRQLEWKERKKFQKRL 246
+LVWIPFV+ IVP VD+ +EM ITPPKGLLE+N+R D+RSKKERRQLEWKERKK QKRL
Sbjct: 233 QLVWIPFVDAIVPDVDLERKEMYITPPKGLLEVNMRADDRSKKERRQLEWKERKKQQKRL 292
Query: 247 IAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNATE 306
IAAKKKL EMEQ+HVF G RFGEK Q +LLA+HI+ +NS LLQ+ALQ+I+ SKRWN TE
Sbjct: 293 IAAKKKLCEMEQKHVFDGLRFGEKSQRNLLADHILNVNSTLLQKALQSIDTSSKRWNVTE 352
Query: 307 LMNATKAELMISSLKISGEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSE 366
+NA +A + +L +S E L A + + N S ++G +L SEGK ++ LV+++ E
Sbjct: 353 EINALRARVSECNLSVSRE-CLSFDASKENMGDNFSFLQQGQNLFSEGKVSICLVLNDHE 411
Query: 367 EGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLF 426
NE +P N ++ L LL ++QRF+K E+RA +PLV+V P ++ L+KLF
Sbjct: 412 --NE-EPEG------ENGVVSYLHALLDEEQRFIKEEDRACVPLVIVSPEHTIEALQKLF 462
Query: 427 LDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPXXXXXXXXXXXX 486
DNDHF F+S+K+W L+EE LP+V SP E K KILMKSPWE L++P
Sbjct: 463 QDNDHFGFESEKIWILKEETLPVVCSSPEEPKKHKILMKSPWEILESPVGSGGVLSILAS 522
Query: 487 HNIIKNLDELGVEYIQICTAN----PRNAIGNSMFLGFVKSCGADIGFQISEYAKHSE-E 541
H +L LG+ Y+Q+ + P N M +GFV + GA+IG Q++E SE +
Sbjct: 523 HGTTDSLSTLGINYLQVHSIETKPQPSQHYINPMLVGFVSARGAEIGIQVTE---ESELK 579
Query: 542 RFNTMLSMNVMKKLTNHINKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYSC 601
SM +K+L K+EF A K+NSHV+ V+KE+++ +P+ PNS+E RS IY
Sbjct: 580 NLEMTFSMKFLKRLKG---KIEFEAVMKMNSHVQNVEKEWVESVPSEPNSFEFRSDIYRV 636
Query: 602 LNACSLD-KVCVMEIT 616
L+ CS K+C+M IT
Sbjct: 637 LSECSSSAKICLMNIT 652
>UNIPROTKB|Q81WJ5 [details] [associations]
symbol:rimM "Ribosome maturation factor RimM" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
HAMAP:MF_00014 InterPro:IPR002676 InterPro:IPR011961 Pfam:PF01782
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0005840
GO:GO:0043022 GO:GO:0006364 InterPro:IPR011033 SUPFAM:SSF50346
InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0806 KO:K02860
Gene3D:2.40.30.60 TIGRFAMs:TIGR02273 RefSeq:NP_846222.1
RefSeq:YP_020619.1 RefSeq:YP_029944.1 ProteinModelPortal:Q81WJ5
DNASU:1087540 EnsemblBacteria:EBBACT00000009834
EnsemblBacteria:EBBACT00000017053 EnsemblBacteria:EBBACT00000020722
GeneID:1087540 GeneID:2820019 GeneID:2849877 KEGG:ban:BA_3980
KEGG:bar:GBAA_3980 KEGG:bat:BAS3693 HOGENOM:HOG000220990
OMA:DEFYDHE ProtClustDB:PRK00122
BioCyc:BANT260799:GJAJ-3751-MONOMER
BioCyc:BANT261594:GJ7F-3868-MONOMER Uniprot:Q81WJ5
Length = 171
Score = 209 (78.6 bits), Expect = 5.7e-18, Sum P(2) = 5.7e-18
Identities = 50/133 (37%), Positives = 75/133 (56%)
Query: 28 DVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQ 87
+VG + + HG++GEI V TDFPE R+ T ++ + G E VK+ R+H
Sbjct: 6 NVGKIVNTHGVKGEIRVVSRTDFPEERYKVGNTLYISNEK-GGEPF-PVKITSHRQH--- 60
Query: 88 KSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 146
K++ +LTFEG V + GS L E EL +GE+Y +++G VV +E GE +G
Sbjct: 61 KTFDLLTFEGYGNVNEVEQFKGSLLKVPEDQLGELAEGEYYYHEIIGCNVVTEE-GEALG 119
Query: 147 TVVNVFNSGANDL 159
T+ V + GAND+
Sbjct: 120 TIKEVLSPGANDV 132
Score = 41 (19.5 bits), Expect = 5.7e-18, Sum P(2) = 5.7e-18
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 191 IPFVEEIVPIVDMNGREMQITPPKGLL 217
IP+++++V V++ + + I +GLL
Sbjct: 145 IPYIDDVVLQVNIENKLVTIHVTEGLL 171
>TIGR_CMR|BA_3980 [details] [associations]
symbol:BA_3980 "16S rRNA processing protein RimM"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0006396 "RNA processing"
evidence=ISS] HAMAP:MF_00014 InterPro:IPR002676 InterPro:IPR011961
Pfam:PF01782 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0005840 GO:GO:0043022 GO:GO:0006364
InterPro:IPR011033 SUPFAM:SSF50346 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0806 KO:K02860 Gene3D:2.40.30.60
TIGRFAMs:TIGR02273 RefSeq:NP_846222.1 RefSeq:YP_020619.1
RefSeq:YP_029944.1 ProteinModelPortal:Q81WJ5 DNASU:1087540
EnsemblBacteria:EBBACT00000009834 EnsemblBacteria:EBBACT00000017053
EnsemblBacteria:EBBACT00000020722 GeneID:1087540 GeneID:2820019
GeneID:2849877 KEGG:ban:BA_3980 KEGG:bar:GBAA_3980 KEGG:bat:BAS3693
HOGENOM:HOG000220990 OMA:DEFYDHE ProtClustDB:PRK00122
BioCyc:BANT260799:GJAJ-3751-MONOMER
BioCyc:BANT261594:GJ7F-3868-MONOMER Uniprot:Q81WJ5
Length = 171
Score = 209 (78.6 bits), Expect = 5.7e-18, Sum P(2) = 5.7e-18
Identities = 50/133 (37%), Positives = 75/133 (56%)
Query: 28 DVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQ 87
+VG + + HG++GEI V TDFPE R+ T ++ + G E VK+ R+H
Sbjct: 6 NVGKIVNTHGVKGEIRVVSRTDFPEERYKVGNTLYISNEK-GGEPF-PVKITSHRQH--- 60
Query: 88 KSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 146
K++ +LTFEG V + GS L E EL +GE+Y +++G VV +E GE +G
Sbjct: 61 KTFDLLTFEGYGNVNEVEQFKGSLLKVPEDQLGELAEGEYYYHEIIGCNVVTEE-GEALG 119
Query: 147 TVVNVFNSGANDL 159
T+ V + GAND+
Sbjct: 120 TIKEVLSPGANDV 132
Score = 41 (19.5 bits), Expect = 5.7e-18, Sum P(2) = 5.7e-18
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 191 IPFVEEIVPIVDMNGREMQITPPKGLL 217
IP+++++V V++ + + I +GLL
Sbjct: 145 IPYIDDVVLQVNIENKLVTIHVTEGLL 171
>UNIPROTKB|Q71YM3 [details] [associations]
symbol:rimM "Ribosome maturation factor RimM"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0003674 "molecular_function" evidence=ND] HAMAP:MF_00014
InterPro:IPR002676 InterPro:IPR011961 Pfam:PF01782 GO:GO:0005840
GO:GO:0043022 EMBL:AE017262 GenomeReviews:AE017262_GR GO:GO:0006364
InterPro:IPR011033 SUPFAM:SSF50346 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0806 KO:K02860 Gene3D:2.40.30.60
TIGRFAMs:TIGR02273 HOGENOM:HOG000220990 ProtClustDB:PRK00122
RefSeq:YP_014414.1 ProteinModelPortal:Q71YM3 STRING:Q71YM3
GeneID:2799425 KEGG:lmf:LMOf2365_1820 PATRIC:20324933 OMA:NTHGLIG
Uniprot:Q71YM3
Length = 169
Score = 182 (69.1 bits), Expect = 5.3e-16, Sum P(2) = 5.3e-16
Identities = 46/133 (34%), Positives = 71/133 (53%)
Query: 28 DVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQ 87
+VG + + HGL GEI V +TDFPE RF T +L + + + + KLI R H
Sbjct: 3 NVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFE----KNSKKPEKLII-RSHRKH 57
Query: 88 KSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 146
K++ +L FEG + Q + L +E +LE+ EFY +++G VV + GE +G
Sbjct: 58 KNFDLLMFEGFTGIHQVERMKEGVLKIKEAQLTDLEENEFYFHEIIGCIVVTTD-GEELG 116
Query: 147 TVVNVFNSGANDL 159
+ + GAND+
Sbjct: 117 EITEILTPGANDV 129
Score = 50 (22.7 bits), Expect = 5.3e-16, Sum P(2) = 5.3e-16
Identities = 8/28 (28%), Positives = 20/28 (71%)
Query: 191 IPFVEEIVPIVDMNGREMQITPPKGLLE 218
IP++ ++V +++N +++ I +GLL+
Sbjct: 142 IPYIADVVKEININDKKITIEVMEGLLD 169
>UNIPROTKB|P66653 [details] [associations]
symbol:rimM "Ribosome maturation factor RimM" species:1773
"Mycobacterium tuberculosis" [GO:0040007 "growth" evidence=IMP]
HAMAP:MF_00014 InterPro:IPR002676 InterPro:IPR011961 Pfam:PF01782
GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0005840 GO:GO:0043022 EMBL:BX842581
GO:GO:0006364 InterPro:IPR011033 SUPFAM:SSF50346 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0806 KO:K02860 Gene3D:2.40.30.60
TIGRFAMs:TIGR02273 OMA:DEFYDHE ProtClustDB:PRK00122 PIR:F70927
RefSeq:NP_217423.1 RefSeq:NP_337487.1 RefSeq:YP_006516360.1
ProteinModelPortal:P66653 SMR:P66653 PRIDE:P66653
EnsemblBacteria:EBMYCT00000002416 EnsemblBacteria:EBMYCT00000072696
GeneID:13317700 GeneID:887188 GeneID:925303 KEGG:mtc:MT2975
KEGG:mtu:Rv2907c KEGG:mtv:RVBD_2907c PATRIC:18128310
TubercuList:Rv2907c HOGENOM:HOG000220991 Uniprot:P66653
Length = 176
Score = 141 (54.7 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 46/138 (33%), Positives = 69/138 (50%)
Query: 29 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL--GRETIREVKLIDG-REHP 85
VG V HG+ GE+ V+ TD P RF PGTR + G E +I+ R+H
Sbjct: 5 VGRVVKSHGVTGEVVVEIRTDDPADRFA-PGTRLRAKGPFDGGAEGSAVSYVIESVRQHG 63
Query: 86 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE-FYTRDLVGMRVVMKETGEL 144
G+ ++ G+ + A L GS + D P +++ + +Y LVG+ +V TGE
Sbjct: 64 GRL--LVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGL-MVQTATGEG 120
Query: 145 VGTVVNVFNSGANDLLHV 162
VG V V ++ A +LL V
Sbjct: 121 VGVVTEVVHTAAGELLAV 138
Score = 64 (27.6 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 189 VWIPFVEEIVPIVDMNGREMQITPPKGLLEL 219
V +PFV IV V ++ ++I PP GLL L
Sbjct: 145 VLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175
>UNIPROTKB|Q47WU9 [details] [associations]
symbol:rimM "Ribosome maturation factor RimM"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_00014 InterPro:IPR002676
InterPro:IPR011961 Pfam:PF01782 GO:GO:0005840 GO:GO:0043022
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0006364
InterPro:IPR011033 SUPFAM:SSF50346 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0806 HOGENOM:HOG000220989 KO:K02860
Gene3D:2.40.30.60 TIGRFAMs:TIGR02273 ProtClustDB:PRK00122
RefSeq:YP_270723.1 ProteinModelPortal:Q47WU9 STRING:Q47WU9
DNASU:3522124 GeneID:3522124 KEGG:cps:CPS_4068 PATRIC:21471011
OMA:RRIVVDW BioCyc:CPSY167879:GI48-4081-MONOMER Uniprot:Q47WU9
Length = 176
Score = 180 (68.4 bits), Expect = 6.5e-13, P = 6.5e-13
Identities = 49/134 (36%), Positives = 75/134 (55%)
Query: 29 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 88
+G V +V+G++G + + TD E W + LG T + V++ D R+H K
Sbjct: 10 LGKVGAVYGIKGWLKIHSFTD--ETEAILDYFPWSLK--LGNNT-QTVEITDWRKH--NK 62
Query: 89 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 148
I+ GID ++A+ LVGS +L E PEL + +FY RDL+GM VV + +L G V
Sbjct: 63 VLIVKVAGIDDRDEAQALVGSEILTNEAALPELSEDDFYWRDLIGMSVVTNKGYDL-GVV 121
Query: 149 VNVFNSGANDLLHV 162
++ +GAND+L V
Sbjct: 122 TDMMETGANDVLVV 135
>TIGR_CMR|CPS_4068 [details] [associations]
symbol:CPS_4068 "16S rRNA processing protein RimM"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0006364 "rRNA processing"
evidence=ISS] HAMAP:MF_00014 InterPro:IPR002676 InterPro:IPR011961
Pfam:PF01782 GO:GO:0005840 GO:GO:0043022 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0006364 InterPro:IPR011033
SUPFAM:SSF50346 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0806
HOGENOM:HOG000220989 KO:K02860 Gene3D:2.40.30.60 TIGRFAMs:TIGR02273
ProtClustDB:PRK00122 RefSeq:YP_270723.1 ProteinModelPortal:Q47WU9
STRING:Q47WU9 DNASU:3522124 GeneID:3522124 KEGG:cps:CPS_4068
PATRIC:21471011 OMA:RRIVVDW BioCyc:CPSY167879:GI48-4081-MONOMER
Uniprot:Q47WU9
Length = 176
Score = 180 (68.4 bits), Expect = 6.5e-13, P = 6.5e-13
Identities = 49/134 (36%), Positives = 75/134 (55%)
Query: 29 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 88
+G V +V+G++G + + TD E W + LG T + V++ D R+H K
Sbjct: 10 LGKVGAVYGIKGWLKIHSFTD--ETEAILDYFPWSLK--LGNNT-QTVEITDWRKH--NK 62
Query: 89 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 148
I+ GID ++A+ LVGS +L E PEL + +FY RDL+GM VV + +L G V
Sbjct: 63 VLIVKVAGIDDRDEAQALVGSEILTNEAALPELSEDDFYWRDLIGMSVVTNKGYDL-GVV 121
Query: 149 VNVFNSGANDLLHV 162
++ +GAND+L V
Sbjct: 122 TDMMETGANDVLVV 135
>UNIPROTKB|Q5LNF0 [details] [associations]
symbol:rimM "Ribosome maturation factor RimM"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_00014 InterPro:IPR002676
InterPro:IPR011961 Pfam:PF01782 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0005840 GO:GO:0043022 GO:GO:0006364
InterPro:IPR011033 SUPFAM:SSF50346 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0806 HOGENOM:HOG000220989 KO:K02860
OMA:DEFYHAD Gene3D:2.40.30.60 TIGRFAMs:TIGR02273 RefSeq:YP_168458.1
ProteinModelPortal:Q5LNF0 GeneID:3194913 KEGG:sil:SPO3255
PATRIC:23379955 ProtClustDB:PRK13828 Uniprot:Q5LNF0
Length = 167
Score = 130 (50.8 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
Identities = 43/139 (30%), Positives = 64/139 (46%)
Query: 25 DFVDVGYVYSVHGLQGEISVKPSTDFPE-LRFTTPGTRWLRQQVLGRETIREVKLIDGRE 83
D + VG V G++GE+ +K PE + +P T + R I + I
Sbjct: 3 DLICVGSVAGSFGVRGEVRLKSFCAVPEDIEMYSPLTD---ESGTARYPIVLTRAI---- 55
Query: 84 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 143
+ + G++T E+A L G L + P L D EFY DL+G+ V G
Sbjct: 56 ---KNGFAAHLGGVETKEEADALKGLRLYTQRDRLPSLPDDEFYHTDLIGLEV-FDTGGT 111
Query: 144 LVGTVVNVFNSGANDLLHV 162
L+G V++V N GA DLL +
Sbjct: 112 LLGKVISVQNHGAADLLEI 130
Score = 64 (27.6 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 189 VWIPFVEEIVPIVDMNGREMQITPPKGL 216
V +PF + VP VD+ R + PP+GL
Sbjct: 139 VLLPFTQAAVPTVDLEQRRIVADPPEGL 166
>TIGR_CMR|SPO_3255 [details] [associations]
symbol:SPO_3255 "16S rRNA processing protein RimM"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003674
"molecular_function" evidence=ND] [GO:0006364 "rRNA processing"
evidence=ISS] HAMAP:MF_00014 InterPro:IPR002676 InterPro:IPR011961
Pfam:PF01782 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0005840
GO:GO:0043022 GO:GO:0006364 InterPro:IPR011033 SUPFAM:SSF50346
InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0806
HOGENOM:HOG000220989 KO:K02860 OMA:DEFYHAD Gene3D:2.40.30.60
TIGRFAMs:TIGR02273 RefSeq:YP_168458.1 ProteinModelPortal:Q5LNF0
GeneID:3194913 KEGG:sil:SPO3255 PATRIC:23379955
ProtClustDB:PRK13828 Uniprot:Q5LNF0
Length = 167
Score = 130 (50.8 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
Identities = 43/139 (30%), Positives = 64/139 (46%)
Query: 25 DFVDVGYVYSVHGLQGEISVKPSTDFPE-LRFTTPGTRWLRQQVLGRETIREVKLIDGRE 83
D + VG V G++GE+ +K PE + +P T + R I + I
Sbjct: 3 DLICVGSVAGSFGVRGEVRLKSFCAVPEDIEMYSPLTD---ESGTARYPIVLTRAI---- 55
Query: 84 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 143
+ + G++T E+A L G L + P L D EFY DL+G+ V G
Sbjct: 56 ---KNGFAAHLGGVETKEEADALKGLRLYTQRDRLPSLPDDEFYHTDLIGLEV-FDTGGT 111
Query: 144 LVGTVVNVFNSGANDLLHV 162
L+G V++V N GA DLL +
Sbjct: 112 LLGKVISVQNHGAADLLEI 130
Score = 64 (27.6 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 189 VWIPFVEEIVPIVDMNGREMQITPPKGL 216
V +PF + VP VD+ R + PP+GL
Sbjct: 139 VLLPFTQAAVPTVDLEQRRIVADPPEGL 166
>UNIPROTKB|Q60BS2 [details] [associations]
symbol:rimM "Ribosome maturation factor RimM"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_00014 InterPro:IPR002676
InterPro:IPR011961 Pfam:PF01782 GO:GO:0005840 GO:GO:0043022
EMBL:AE017282 GenomeReviews:AE017282_GR GO:GO:0006364
InterPro:IPR011033 SUPFAM:SSF50346 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0806 HOGENOM:HOG000220989 KO:K02860
Gene3D:2.40.30.60 TIGRFAMs:TIGR02273 OMA:RRIVVDW RefSeq:YP_112924.1
ProteinModelPortal:Q60BS2 GeneID:3102757 KEGG:mca:MCA0393
PATRIC:22604533 Uniprot:Q60BS2
Length = 172
Score = 167 (63.8 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 55/144 (38%), Positives = 76/144 (52%)
Query: 22 SGLD-FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTR-WLRQQVLGRETIREVKLI 79
SG D V VG V G++G + TD P + G R W ++ G + R ++
Sbjct: 5 SGNDRSVVVGRVSGAFGVRGWVKAVSFTD-PPVNLV--GYRPWTLRR--G-DAERRADVL 58
Query: 80 DGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMK 139
+GREH G + I+ +G+DT EQA L G + R P GE+Y DLVG++VV
Sbjct: 59 EGREH-GN-AVIVRLQGVDTREQAEALKGFEVTVRRSQLPPPAPGEYYRVDLVGLKVV-- 114
Query: 140 ETGELV-GTVVNVFNSGANDLLHV 162
GE V G VV+V +GAND+L V
Sbjct: 115 NLGETVLGEVVDVMETGANDVLVV 138
>UNIPROTKB|Q9KUF9 [details] [associations]
symbol:rimM "Ribosome maturation factor RimM"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0006396 "RNA
processing" evidence=ISS] HAMAP:MF_00014 InterPro:IPR002676
InterPro:IPR011961 Pfam:PF01782 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0043022 GO:GO:0006396
GO:GO:0006364 InterPro:IPR011033 SUPFAM:SSF50346 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0806 KO:K02860 Gene3D:2.40.30.60
TIGRFAMs:TIGR02273 ProtClustDB:PRK00122 OMA:RRIVVDW PIR:B82307
RefSeq:NP_230213.1 ProteinModelPortal:Q9KUF9 DNASU:2615239
GeneID:2615239 KEGG:vch:VC0562 PATRIC:20080242 Uniprot:Q9KUF9
Length = 182
Score = 156 (60.0 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 57/194 (29%), Positives = 92/194 (47%)
Query: 18 ETSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVK 77
ET + + + VG + S +G++G + V TD PE F + W Q G E + E K
Sbjct: 5 ETMSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFDY--SPWYIDQK-G-EWV-EYK 59
Query: 78 LIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVV 137
+ + H K W++ +G+D E A L + PEL + EFY R+L GM+VV
Sbjct: 60 VEGWKRH--NKGWVVKLQGLDVREDAHLLTNFEIAIDPASLPELSEDEFYWRELFGMQVV 117
Query: 138 MKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIXXXXXXXXXXXXXXXRLVWIPFVEE- 196
+L G V ++ +G+ND+L V N+ RL IPF+EE
Sbjct: 118 TTNGYDL-GVVTDMMETGSNDVLVV----KANL--------KDAFGQKERL--IPFLEEQ 162
Query: 197 IVPIVDMNGREMQI 210
++ +VD + +++
Sbjct: 163 VIKVVDRQAQRIEV 176
>TIGR_CMR|VC_0562 [details] [associations]
symbol:VC_0562 "16S rRNA processing protein RimM"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003674
"molecular_function" evidence=ND] [GO:0006396 "RNA processing"
evidence=ISS] HAMAP:MF_00014 InterPro:IPR002676 InterPro:IPR011961
Pfam:PF01782 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840
GO:GO:0043022 GO:GO:0006396 GO:GO:0006364 InterPro:IPR011033
SUPFAM:SSF50346 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0806
KO:K02860 Gene3D:2.40.30.60 TIGRFAMs:TIGR02273 ProtClustDB:PRK00122
OMA:RRIVVDW PIR:B82307 RefSeq:NP_230213.1 ProteinModelPortal:Q9KUF9
DNASU:2615239 GeneID:2615239 KEGG:vch:VC0562 PATRIC:20080242
Uniprot:Q9KUF9
Length = 182
Score = 156 (60.0 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 57/194 (29%), Positives = 92/194 (47%)
Query: 18 ETSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVK 77
ET + + + VG + S +G++G + V TD PE F + W Q G E + E K
Sbjct: 5 ETMSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFDY--SPWYIDQK-G-EWV-EYK 59
Query: 78 LIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVV 137
+ + H K W++ +G+D E A L + PEL + EFY R+L GM+VV
Sbjct: 60 VEGWKRH--NKGWVVKLQGLDVREDAHLLTNFEIAIDPASLPELSEDEFYWRELFGMQVV 117
Query: 138 MKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIXXXXXXXXXXXXXXXRLVWIPFVEE- 196
+L G V ++ +G+ND+L V N+ RL IPF+EE
Sbjct: 118 TTNGYDL-GVVTDMMETGSNDVLVV----KANL--------KDAFGQKERL--IPFLEEQ 162
Query: 197 IVPIVDMNGREMQI 210
++ +VD + +++
Sbjct: 163 VIKVVDRQAQRIEV 176
>UNIPROTKB|P0A7X6 [details] [associations]
symbol:rimM species:83333 "Escherichia coli K-12"
[GO:0030490 "maturation of SSU-rRNA" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0000028 "ribosomal small
subunit assembly" evidence=IMP] [GO:0043022 "ribosome binding"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] HAMAP:MF_00014 InterPro:IPR002676
InterPro:IPR011961 Pfam:PF01782 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0005840
GO:GO:0043022 GO:GO:0030490 InterPro:IPR011033 SUPFAM:SSF50346
InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0806
HOGENOM:HOG000220989 KO:K02860 Gene3D:2.40.30.60 TIGRFAMs:TIGR02273
ProtClustDB:PRK00122 OMA:RRIVVDW EMBL:X01818 PIR:C65039
RefSeq:NP_417099.4 RefSeq:YP_490831.1 ProteinModelPortal:P0A7X6
SMR:P0A7X6 SWISS-2DPAGE:P0A7X6 PRIDE:P0A7X6
EnsemblBacteria:EBESCT00000002494 EnsemblBacteria:EBESCT00000014623
GeneID:12934077 GeneID:947101 KEGG:ecj:Y75_p2556 KEGG:eco:b2608
PATRIC:32120615 EchoBASE:EB1142 EcoGene:EG11153
BioCyc:EcoCyc:EG11153-MONOMER BioCyc:ECOL316407:JW5413-MONOMER
Genevestigator:P0A7X6 Uniprot:P0A7X6
Length = 182
Score = 145 (56.1 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 41/142 (28%), Positives = 78/142 (54%)
Query: 19 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKL 78
T+ + +D + +G + S +G++G + V ST+ E F W Q+ G+ ++V+L
Sbjct: 6 TAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQP--WFIQKA-GQW--QQVQL 60
Query: 79 IDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVM 138
+ H + I+ +G+D + A L ++ P+LE+G++Y +DL+G +VV
Sbjct: 61 ESWKHH--NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVT 118
Query: 139 KETGELVGTVVNVFNSGANDLL 160
E +L G VV++ +G+ND+L
Sbjct: 119 TEGYDL-GKVVDMMETGSNDVL 139
>UNIPROTKB|Q8EH71 [details] [associations]
symbol:rimM "Ribosome maturation factor RimM"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_00014 InterPro:IPR002676
InterPro:IPR011961 Pfam:PF01782 GO:GO:0005840 GO:GO:0043022
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0006364
InterPro:IPR011033 SUPFAM:SSF50346 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0806 HOGENOM:HOG000220989 KO:K02860
Gene3D:2.40.30.60 TIGRFAMs:TIGR02273 ProtClustDB:PRK00122
OMA:RRIVVDW RefSeq:NP_716978.2 ProteinModelPortal:Q8EH71
GeneID:1169179 KEGG:son:SO_1358 PATRIC:23522370 Uniprot:Q8EH71
Length = 177
Score = 135 (52.6 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 45/136 (33%), Positives = 70/136 (51%)
Query: 27 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 86
V +G + S HG++G + + TD E F + WL ++ E REVK+I R + G
Sbjct: 9 VVLGKLGSCHGIKGWLKITAYTDSVEGIFDY--SPWLIKE--NGEW-REVKVIQWR-YQG 62
Query: 87 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 146
K+ + EG+ T E+A+ L + L + EFY RDL+G V+ TG +G
Sbjct: 63 -KAVVAELEGVTTRERAQMLTNCEIGILPQQMNALPEDEFYWRDLIGCEVI-NTTGYNMG 120
Query: 147 TVVNVFNSGANDLLHV 162
V + +G+ND+L V
Sbjct: 121 IVDQIVETGSNDVLLV 136
>TIGR_CMR|SO_1358 [details] [associations]
symbol:SO_1358 "16S rRNA processing protein RimM"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0006364 "rRNA processing"
evidence=ISS] HAMAP:MF_00014 InterPro:IPR002676 InterPro:IPR011961
Pfam:PF01782 GO:GO:0005840 GO:GO:0043022 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006364 InterPro:IPR011033
SUPFAM:SSF50346 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0806
HOGENOM:HOG000220989 KO:K02860 Gene3D:2.40.30.60 TIGRFAMs:TIGR02273
ProtClustDB:PRK00122 OMA:RRIVVDW RefSeq:NP_716978.2
ProteinModelPortal:Q8EH71 GeneID:1169179 KEGG:son:SO_1358
PATRIC:23522370 Uniprot:Q8EH71
Length = 177
Score = 135 (52.6 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 45/136 (33%), Positives = 70/136 (51%)
Query: 27 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 86
V +G + S HG++G + + TD E F + WL ++ E REVK+I R + G
Sbjct: 9 VVLGKLGSCHGIKGWLKITAYTDSVEGIFDY--SPWLIKE--NGEW-REVKVIQWR-YQG 62
Query: 87 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 146
K+ + EG+ T E+A+ L + L + EFY RDL+G V+ TG +G
Sbjct: 63 -KAVVAELEGVTTRERAQMLTNCEIGILPQQMNALPEDEFYWRDLIGCEVI-NTTGYNMG 120
Query: 147 TVVNVFNSGANDLLHV 162
V + +G+ND+L V
Sbjct: 121 IVDQIVETGSNDVLLV 136
>UNIPROTKB|Q3AC71 [details] [associations]
symbol:rimM "Ribosome maturation factor RimM"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] HAMAP:MF_00014
InterPro:IPR002676 InterPro:IPR011961 Pfam:PF01782 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005840 GO:GO:0043022 GO:GO:0006364
InterPro:IPR011033 SUPFAM:SSF50346 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0806 KO:K02860 Gene3D:2.40.30.60
TIGRFAMs:TIGR02273 HOGENOM:HOG000220990 RefSeq:YP_360263.1
ProteinModelPortal:Q3AC71 STRING:Q3AC71 GeneID:3727919
KEGG:chy:CHY_1431 PATRIC:21275993 OMA:ENIREHN
BioCyc:CHYD246194:GJCN-1430-MONOMER Uniprot:Q3AC71
Length = 172
Score = 128 (50.1 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 39/137 (28%), Positives = 65/137 (47%)
Query: 25 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 84
+ + +GYV G++G + V+P TD P+ T W ++ + I EV+L
Sbjct: 3 NLIAIGYVLGTFGIEGWVKVEPLTDHPQRFLNTERVFWEKEDEIFPLRIEEVQL------ 56
Query: 85 PGQKSWILT-FEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 143
Q IL F I+ +++A L+ L + + +L++ EFY L G+ V +
Sbjct: 57 --QAERILVKFMEINDIKEANKLIFGYLKIPKNEIVQLKENEFYLFQLKGL-TVYDLNYQ 113
Query: 144 LVGTVVNVFNSGANDLL 160
+G V V + ANDLL
Sbjct: 114 KIGVVRTVLKNPANDLL 130
>TIGR_CMR|CHY_1431 [details] [associations]
symbol:CHY_1431 "16S rRNA processing protein RimM"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0006364 "rRNA
processing" evidence=ISS] HAMAP:MF_00014 InterPro:IPR002676
InterPro:IPR011961 Pfam:PF01782 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005840 GO:GO:0043022 GO:GO:0006364
InterPro:IPR011033 SUPFAM:SSF50346 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0806 KO:K02860 Gene3D:2.40.30.60
TIGRFAMs:TIGR02273 HOGENOM:HOG000220990 RefSeq:YP_360263.1
ProteinModelPortal:Q3AC71 STRING:Q3AC71 GeneID:3727919
KEGG:chy:CHY_1431 PATRIC:21275993 OMA:ENIREHN
BioCyc:CHYD246194:GJCN-1430-MONOMER Uniprot:Q3AC71
Length = 172
Score = 128 (50.1 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 39/137 (28%), Positives = 65/137 (47%)
Query: 25 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 84
+ + +GYV G++G + V+P TD P+ T W ++ + I EV+L
Sbjct: 3 NLIAIGYVLGTFGIEGWVKVEPLTDHPQRFLNTERVFWEKEDEIFPLRIEEVQL------ 56
Query: 85 PGQKSWILT-FEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 143
Q IL F I+ +++A L+ L + + +L++ EFY L G+ V +
Sbjct: 57 --QAERILVKFMEINDIKEANKLIFGYLKIPKNEIVQLKENEFYLFQLKGL-TVYDLNYQ 113
Query: 144 LVGTVVNVFNSGANDLL 160
+G V V + ANDLL
Sbjct: 114 KIGVVRTVLKNPANDLL 130
>UNIPROTKB|Q2GI96 [details] [associations]
symbol:rimM "Ribosome maturation factor RimM"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_00014 InterPro:IPR002676
InterPro:IPR011961 Pfam:PF01782 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0005840 GO:GO:0043022 GO:GO:0006364
InterPro:IPR011033 SUPFAM:SSF50346 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0806 HOGENOM:HOG000220989 KO:K02860
OMA:DEFYHAD ProtClustDB:PRK14592 Gene3D:2.40.30.60
TIGRFAMs:TIGR02273 RefSeq:YP_506837.1 ProteinModelPortal:Q2GI96
STRING:Q2GI96 GeneID:3927144 KEGG:ech:ECH_0002 PATRIC:20575577
BioCyc:ECHA205920:GJNR-2-MONOMER Uniprot:Q2GI96
Length = 175
Score = 123 (48.4 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 42/144 (29%), Positives = 66/144 (45%)
Query: 25 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 84
D + +G + S HG+ G + +K T+ PE FT+ GT L G T EV++I
Sbjct: 4 DLICLGVITSSHGISGHVKIKTFTENPE-DFTSYGT--LTD---GINTY-EVEIIS---I 53
Query: 85 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPE-LEDGEFYTRDLVGMRVVMKETGE 143
Q I +GI + A L + P D EFY DL+G+ VV+ E
Sbjct: 54 ISQNIIIAQIKGIVSRTDADLLRNKKFFVEKNKLPNPTNDDEFYYSDLIGLNVVL-ENNN 112
Query: 144 LVGTVVNVFNSGANDLLHVMCYSS 167
+ G + + N G+ D++ + +S
Sbjct: 113 VYGNIKKIHNFGSCDIIEIRLSNS 136
Score = 43 (20.2 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 191 IPFVEEIVPIVDMNGREMQITPPK 214
+PF ++I P V++ + + IT P+
Sbjct: 142 LPFTKDIFPYVNVKEKYIIITLPE 165
>TIGR_CMR|ECH_0002 [details] [associations]
symbol:ECH_0002 "16S rRNA processing protein RimM"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003674
"molecular_function" evidence=ND] [GO:0006364 "rRNA processing"
evidence=ISS] HAMAP:MF_00014 InterPro:IPR002676 InterPro:IPR011961
Pfam:PF01782 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0005840
GO:GO:0043022 GO:GO:0006364 InterPro:IPR011033 SUPFAM:SSF50346
InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0806
HOGENOM:HOG000220989 KO:K02860 OMA:DEFYHAD ProtClustDB:PRK14592
Gene3D:2.40.30.60 TIGRFAMs:TIGR02273 RefSeq:YP_506837.1
ProteinModelPortal:Q2GI96 STRING:Q2GI96 GeneID:3927144
KEGG:ech:ECH_0002 PATRIC:20575577 BioCyc:ECHA205920:GJNR-2-MONOMER
Uniprot:Q2GI96
Length = 175
Score = 123 (48.4 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 42/144 (29%), Positives = 66/144 (45%)
Query: 25 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 84
D + +G + S HG+ G + +K T+ PE FT+ GT L G T EV++I
Sbjct: 4 DLICLGVITSSHGISGHVKIKTFTENPE-DFTSYGT--LTD---GINTY-EVEIIS---I 53
Query: 85 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPE-LEDGEFYTRDLVGMRVVMKETGE 143
Q I +GI + A L + P D EFY DL+G+ VV+ E
Sbjct: 54 ISQNIIIAQIKGIVSRTDADLLRNKKFFVEKNKLPNPTNDDEFYYSDLIGLNVVL-ENNN 112
Query: 144 LVGTVVNVFNSGANDLLHVMCYSS 167
+ G + + N G+ D++ + +S
Sbjct: 113 VYGNIKKIHNFGSCDIIEIRLSNS 136
Score = 43 (20.2 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 191 IPFVEEIVPIVDMNGREMQITPPK 214
+PF ++I P V++ + + IT P+
Sbjct: 142 LPFTKDIFPYVNVKEKYIIITLPE 165
>UNIPROTKB|Q2GIL4 [details] [associations]
symbol:rimM "Ribosome maturation factor RimM"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_00014 InterPro:IPR002676
InterPro:IPR011961 Pfam:PF01782 GO:GO:0005840 GO:GO:0043022
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0006364
InterPro:IPR011033 SUPFAM:SSF50346 InterPro:IPR009000
SUPFAM:SSF50447 RefSeq:YP_505787.1 ProteinModelPortal:Q2GIL4
STRING:Q2GIL4 GeneID:3930185 KEGG:aph:APH_1268 PATRIC:20951326
eggNOG:COG0806 HOGENOM:HOG000220989 KO:K02860 OMA:DEFYHAD
ProtClustDB:PRK14592 BioCyc:APHA212042:GHPM-1271-MONOMER
Gene3D:2.40.30.60 TIGRFAMs:TIGR02273 Uniprot:Q2GIL4
Length = 171
Score = 111 (44.1 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 37/138 (26%), Positives = 67/138 (48%)
Query: 26 FVDVGYVYSVHGLQGEISVKPSTDFP-ELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 84
F+ +G +Y+ HG++G + +K T P ++ P T G E+++ V ++ ++
Sbjct: 7 FILLGVIYAAHGVRGCVKIKTFTHDPSDIAAYGPLTD-------GSESLK-VSVMSVIKN 58
Query: 85 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 144
G I GID A L L P+L++ EFY +L+G+ V + + +
Sbjct: 59 -G--CVIAKISGIDDRCSAEALKNKKLYVSSSCLPKLKNDEFYKDELIGLSVKLPDD-TI 114
Query: 145 VGTVVNVFNSGANDLLHV 162
G V VFN G+ D++ +
Sbjct: 115 FGIVTEVFNFGSGDIVEI 132
Score = 59 (25.8 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 193 FVEEIVPIVDMNGREMQITPPK 214
F I P +DM REM I PP+
Sbjct: 144 FTSNIFPSIDMKTREMTIVPPE 165
>TIGR_CMR|APH_1268 [details] [associations]
symbol:APH_1268 "16S rRNA processing protein RimM"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003674
"molecular_function" evidence=ND] [GO:0006396 "RNA processing"
evidence=ISS] HAMAP:MF_00014 InterPro:IPR002676 InterPro:IPR011961
Pfam:PF01782 GO:GO:0005840 GO:GO:0043022 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0006364 InterPro:IPR011033
SUPFAM:SSF50346 InterPro:IPR009000 SUPFAM:SSF50447
RefSeq:YP_505787.1 ProteinModelPortal:Q2GIL4 STRING:Q2GIL4
GeneID:3930185 KEGG:aph:APH_1268 PATRIC:20951326 eggNOG:COG0806
HOGENOM:HOG000220989 KO:K02860 OMA:DEFYHAD ProtClustDB:PRK14592
BioCyc:APHA212042:GHPM-1271-MONOMER Gene3D:2.40.30.60
TIGRFAMs:TIGR02273 Uniprot:Q2GIL4
Length = 171
Score = 111 (44.1 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 37/138 (26%), Positives = 67/138 (48%)
Query: 26 FVDVGYVYSVHGLQGEISVKPSTDFP-ELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 84
F+ +G +Y+ HG++G + +K T P ++ P T G E+++ V ++ ++
Sbjct: 7 FILLGVIYAAHGVRGCVKIKTFTHDPSDIAAYGPLTD-------GSESLK-VSVMSVIKN 58
Query: 85 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 144
G I GID A L L P+L++ EFY +L+G+ V + + +
Sbjct: 59 -G--CVIAKISGIDDRCSAEALKNKKLYVSSSCLPKLKNDEFYKDELIGLSVKLPDD-TI 114
Query: 145 VGTVVNVFNSGANDLLHV 162
G V VFN G+ D++ +
Sbjct: 115 FGIVTEVFNFGSGDIVEI 132
Score = 59 (25.8 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 193 FVEEIVPIVDMNGREMQITPPK 214
F I P +DM REM I PP+
Sbjct: 144 FTSNIFPSIDMKTREMTIVPPE 165
>UNIPROTKB|Q2GES2 [details] [associations]
symbol:rimM "Ribosome maturation factor RimM"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_00014 InterPro:IPR011961
GO:GO:0005840 GO:GO:0043022 EMBL:CP000237 GenomeReviews:CP000237_GR
GO:GO:0006364 InterPro:IPR011033 SUPFAM:SSF50346 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0806 HOGENOM:HOG000220989 KO:K02860
TIGRFAMs:TIGR02273 RefSeq:YP_506024.1 ProteinModelPortal:Q2GES2
STRING:Q2GES2 GeneID:3931756 KEGG:nse:NSE_0124 PATRIC:22680353
OMA:GSACEAE ProtClustDB:CLSK2527767
BioCyc:NSEN222891:GHFU-160-MONOMER Uniprot:Q2GES2
Length = 163
Score = 107 (42.7 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 41/148 (27%), Positives = 68/148 (45%)
Query: 25 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 84
D V G V S HG++G + + + + F PG +G + + G
Sbjct: 3 DMVCAGRVTSTHGVRGCVRFR---SYMSVDFKFPGI----DVSIGGVSYT----VCGAFS 51
Query: 85 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 144
G ++LT + + +A LVG + E P L+ GE+Y +DLVG+ V E E
Sbjct: 52 RGFPMFVLTLSRVGSACEAEKLVGFDVFLSESLLPPLQVGEYYCKDLVGLAVYDLE--EC 109
Query: 145 VGTVVNVFNSGAN-DLLHVMCYSSVNVI 171
VG V +++ GA ++L ++ S V+
Sbjct: 110 VGHVSMLYDFGAAAEVLEIVLLSGKKVM 137
Score = 46 (21.3 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 189 VWIPFVEEIVPIVDMNGREMQIT-PPK 214
V IPF V +D+N + + + PP+
Sbjct: 136 VMIPFTSAFVADIDLNKKRLAVVFPPE 162
>TIGR_CMR|NSE_0124 [details] [associations]
symbol:NSE_0124 "putative 16S rRNA processing protein
RimM" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003674 "molecular_function" evidence=ND] [GO:0006364 "rRNA
processing" evidence=ISS] HAMAP:MF_00014 InterPro:IPR011961
GO:GO:0005840 GO:GO:0043022 EMBL:CP000237 GenomeReviews:CP000237_GR
GO:GO:0006364 InterPro:IPR011033 SUPFAM:SSF50346 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0806 HOGENOM:HOG000220989 KO:K02860
TIGRFAMs:TIGR02273 RefSeq:YP_506024.1 ProteinModelPortal:Q2GES2
STRING:Q2GES2 GeneID:3931756 KEGG:nse:NSE_0124 PATRIC:22680353
OMA:GSACEAE ProtClustDB:CLSK2527767
BioCyc:NSEN222891:GHFU-160-MONOMER Uniprot:Q2GES2
Length = 163
Score = 107 (42.7 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 41/148 (27%), Positives = 68/148 (45%)
Query: 25 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 84
D V G V S HG++G + + + + F PG +G + + G
Sbjct: 3 DMVCAGRVTSTHGVRGCVRFR---SYMSVDFKFPGI----DVSIGGVSYT----VCGAFS 51
Query: 85 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 144
G ++LT + + +A LVG + E P L+ GE+Y +DLVG+ V E E
Sbjct: 52 RGFPMFVLTLSRVGSACEAEKLVGFDVFLSESLLPPLQVGEYYCKDLVGLAVYDLE--EC 109
Query: 145 VGTVVNVFNSGAN-DLLHVMCYSSVNVI 171
VG V +++ GA ++L ++ S V+
Sbjct: 110 VGHVSMLYDFGAAAEVLEIVLLSGKKVM 137
Score = 46 (21.3 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 189 VWIPFVEEIVPIVDMNGREMQIT-PPK 214
V IPF V +D+N + + + PP+
Sbjct: 136 VMIPFTSAFVADIDLNKKRLAVVFPPE 162
>TIGR_CMR|CBU_0444 [details] [associations]
symbol:CBU_0444 "16S rRNA processing protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
HAMAP:MF_00014 InterPro:IPR002676 InterPro:IPR011961 Pfam:PF01782
GO:GO:0005840 GO:GO:0043022 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0006364 InterPro:IPR011033 SUPFAM:SSF50346 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0806 HOGENOM:HOG000220989 KO:K02860
Gene3D:2.40.30.60 TIGRFAMs:TIGR02273 ProtClustDB:PRK00122
OMA:RRIVVDW RefSeq:NP_819481.1 ProteinModelPortal:Q83E84
GeneID:1208328 KEGG:cbu:CBU_0444 PATRIC:17929579
BioCyc:CBUR227377:GJ7S-442-MONOMER Uniprot:Q83E84
Length = 168
Score = 116 (45.9 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 40/138 (28%), Positives = 65/138 (47%)
Query: 25 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 84
D V +G + +GL+G I V T + P W Q+ + +KL G+ H
Sbjct: 5 DKVIIGRLARPYGLRGWIKVVSFTHPIDNLLNHP--TW---QIQHNNEWQPLKLQAGKLH 59
Query: 85 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 144
+ ++ E ID E A+ + G L++G++Y DL+G+ VV EL
Sbjct: 60 --EPFLVVKLENIDDPETAKHYTNDLIAIERGALGALKEGDYYWTDLIGLAVVNTHGIEL 117
Query: 145 VGTVVNVFNSGANDLLHV 162
GTV ++ +G+ND+L V
Sbjct: 118 -GTVDSLIETGSNDVLVV 134
>UNIPROTKB|Q74FG4 [details] [associations]
symbol:rimM "Ribosome maturation factor RimM"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_00014 InterPro:IPR002676
InterPro:IPR011961 Pfam:PF01782 GO:GO:0005840 GO:GO:0043022
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0006364
InterPro:IPR011033 SUPFAM:SSF50346 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0806 KO:K02860 Gene3D:2.40.30.60
TIGRFAMs:TIGR02273 HOGENOM:HOG000220990 RefSeq:NP_951702.1
ProteinModelPortal:Q74FG4 GeneID:2687183 KEGG:gsu:GSU0645
PATRIC:22024037 OMA:TIRECDA ProtClustDB:CLSK827971
BioCyc:GSUL243231:GH27-655-MONOMER Uniprot:Q74FG4
Length = 172
Score = 86 (35.3 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 30/132 (22%), Positives = 62/132 (46%)
Query: 29 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL-GRETIREVKLIDGREHPGQ 87
+G + + HG++G++ V + F T + L VL G++ E + R
Sbjct: 9 LGKIVTTHGIRGQLKVASFSG----EFDTILS--LETVVLKGKDGRMETFPV-ARATVHH 61
Query: 88 KSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGT 147
+L+ + + L+ + A P LE+GE+Y DL+G++VV G ++G
Sbjct: 62 DRVLLSLTPFTNINEVLHLISAVSYAHRDQFPPLEEGEYYWCDLIGLQVVTA-AGTVIGR 120
Query: 148 VVNVFNSGANDL 159
+ ++ + ++D+
Sbjct: 121 LDSILPTESHDV 132
Score = 74 (31.1 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 191 IPFVEEIVPIVDMNGREMQITPPKGLLEL 219
IP VE++V VD+ M ++PP+GLL+L
Sbjct: 144 IPAVEDVVVQVDLEAGTMTVSPPEGLLDL 172
>TIGR_CMR|GSU_0645 [details] [associations]
symbol:GSU_0645 "16S rRNA processing protein RimM"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0006364 "rRNA processing"
evidence=ISS] HAMAP:MF_00014 InterPro:IPR002676 InterPro:IPR011961
Pfam:PF01782 GO:GO:0005840 GO:GO:0043022 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0006364 InterPro:IPR011033
SUPFAM:SSF50346 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0806
KO:K02860 Gene3D:2.40.30.60 TIGRFAMs:TIGR02273 HOGENOM:HOG000220990
RefSeq:NP_951702.1 ProteinModelPortal:Q74FG4 GeneID:2687183
KEGG:gsu:GSU0645 PATRIC:22024037 OMA:TIRECDA ProtClustDB:CLSK827971
BioCyc:GSUL243231:GH27-655-MONOMER Uniprot:Q74FG4
Length = 172
Score = 86 (35.3 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 30/132 (22%), Positives = 62/132 (46%)
Query: 29 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL-GRETIREVKLIDGREHPGQ 87
+G + + HG++G++ V + F T + L VL G++ E + R
Sbjct: 9 LGKIVTTHGIRGQLKVASFSG----EFDTILS--LETVVLKGKDGRMETFPV-ARATVHH 61
Query: 88 KSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGT 147
+L+ + + L+ + A P LE+GE+Y DL+G++VV G ++G
Sbjct: 62 DRVLLSLTPFTNINEVLHLISAVSYAHRDQFPPLEEGEYYWCDLIGLQVVTA-AGTVIGR 120
Query: 148 VVNVFNSGANDL 159
+ ++ + ++D+
Sbjct: 121 LDSILPTESHDV 132
Score = 74 (31.1 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 191 IPFVEEIVPIVDMNGREMQITPPKGLLEL 219
IP VE++V VD+ M ++PP+GLL+L
Sbjct: 144 IPAVEDVVVQVDLEAGTMTVSPPEGLLDL 172
>ZFIN|ZDB-GENE-030131-1233 [details] [associations]
symbol:uap1 "UDP-N-acteylglucosamine
pyrophosphorylase 1" species:7955 "Danio rerio" [GO:0008152
"metabolic process" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR002618 Pfam:PF01704
ZFIN:ZDB-GENE-030131-1233 GO:GO:0016779 HSSP:Q16222 eggNOG:COG4284
HOGENOM:HOG000186273 HOVERGEN:HBG018024 KO:K00972 OrthoDB:EOG4PG60V
PANTHER:PTHR11952 CTD:6675 EMBL:BC044137 IPI:IPI00485236
RefSeq:NP_997786.1 UniGene:Dr.77112 ProteinModelPortal:Q803Z1
SMR:Q803Z1 PRIDE:Q803Z1 GeneID:322513 KEGG:dre:322513
InParanoid:Q803Z1 NextBio:20807830 ArrayExpress:Q803Z1 Bgee:Q803Z1
Uniprot:Q803Z1
Length = 504
Score = 123 (48.4 bits), Expect = 0.00029, P = 0.00029
Identities = 47/221 (21%), Positives = 94/221 (42%)
Query: 328 LGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEGNECD---PHSVVSEST-AN 383
LG R ++ + +K+G ++E K A++L+ +G P + ++
Sbjct: 76 LGSVTRDRECL--KEWEKEGLRCIAENKVAVLLLAGG--QGTRLGVSFPKGMYDVGLPSH 131
Query: 384 KSLALLQT--LLSDDQRFVKIENR-ASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVW 440
K+L +Q + +Q K +R +P ++ M M + F+ + +F + V
Sbjct: 132 KTLFQIQAERIRKLEQLAEKQHSRKCCIPWYIMTSGRTMDMTKDFFIQHKYFGLKEENVV 191
Query: 441 FLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPXXXXXXXXXXXXHNIIKNLDELGVEY 500
F ++ LP + + KI+++ + AP NI+K+++ G+ Y
Sbjct: 192 FFQQGMLPAMDFNG------KIILEGKCKLAMAPDGNGGLYRALGTQNIVKDMETRGISY 245
Query: 501 IQI-CTANPRNAIGNSMFLGFVKSCGADIGFQISEYAKHSE 540
I + C N + + F+GF GAD G ++ E +E
Sbjct: 246 IHVYCVDNILVKVADPAFIGFCTLKGADCGAKVVEKTNPTE 286
>UNIPROTKB|G3N337 [details] [associations]
symbol:UAP1L1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
InterPro:IPR002618 Pfam:PF01704 GO:GO:0016779 PANTHER:PTHR11952
GeneTree:ENSGT00390000010072 OMA:GTHCTVP EMBL:DAAA02032432
Ensembl:ENSBTAT00000065653 Uniprot:G3N337
Length = 510
Score = 122 (48.0 bits), Expect = 0.00072, Sum P(3) = 0.00072
Identities = 38/141 (26%), Positives = 65/141 (46%)
Query: 405 RASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVS---RSPTEQNKFK 461
R ++P ++ ++ K F ++D F D V E+ LP VS R+ E+ K K
Sbjct: 166 RCTVPWYIMTSEFTLEPTAKFFKEHDFFHLDPNNVIMFEQRMLPAVSFDGRAILER-KDK 224
Query: 462 ILMKSPWETLQAPXXXXXXXXXXXXHNIIKNLDELGVEYIQI-CTANPRNAIGNSMFLGF 520
+ M AP H I+++++ GVE++ + C N + + +F+GF
Sbjct: 225 VAM--------APDGNGGLYSALEDHQILEDMERRGVEFVHVYCVDNILVRLADPLFIGF 276
Query: 521 VKSCGADIGFQISEYAKHSEE 541
GAD G ++ E A + EE
Sbjct: 277 CVLRGADCGAKVVEKA-YPEE 296
Score = 44 (20.5 bits), Expect = 0.00072, Sum P(3) = 0.00072
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 576 KVDKEFIDVIPAAPN--SYE-LRSSIYSCL-NACSLDK 609
K++K DV+P A N +++ LR +S L NA S D+
Sbjct: 386 KMEKFVFDVLPFAKNFMAFQVLREEEFSPLKNADSADR 423
Score = 37 (18.1 bits), Expect = 0.00072, Sum P(3) = 0.00072
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 205 GREMQITPPKGLLELNL---RTDERSKKER-RQLEWKERKKFQKR 245
G + +T PKG+ ++ L +T + + ER R++E +++ R
Sbjct: 122 GTRLGVTYPKGMYQVGLPSQKTLYQLQAERIRRVEQLAGERYGTR 166
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.133 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 617 590 0.00083 120 3 11 22 0.40 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 28
No. of states in DFA: 617 (66 KB)
Total size of DFA: 324 KB (2166 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 52.93u 0.41s 53.34t Elapsed: 00:00:04
Total cpu time: 52.93u 0.41s 53.34t Elapsed: 00:00:04
Start: Tue May 21 02:20:30 2013 End: Tue May 21 02:20:34 2013