BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007117
(617 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F1L|A Chain A, Crystal Structure Of A Putative 16s Ribosomal Rna
Processing Protein Rimm (Pa3744) From Pseudomonas
Aeruginosa At 2.46 A Resolution
Length = 187
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 14/138 (10%)
Query: 25 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRE-TIREVKLIDG 81
D V +G + SV+G++GE+ V FT P L R+ L R+ IR+ +L+ G
Sbjct: 19 DLVVIGKIVSVYGIRGEVKV--------YSFTDPLDNLLDYRRWTLRRDGEIRQAELVRG 70
Query: 82 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 141
R H K +G+D E+AR G + + P LE+GE+Y L G++V+ +
Sbjct: 71 RLH--GKVLAAKLKGLDDREEARTFTGYEICIPRSELPSLEEGEYYWHQLEGLKVI-DQG 127
Query: 142 GELVGTVVNVFNSGANDL 159
+L+G + ++ +GAND+
Sbjct: 128 RQLLGVIDHLLETGANDV 145
>pdb|3H9N|A Chain A, Crystal Structure Of The Ribosome Maturation Factor Rimm
(Hi0203) From H.Influenzae. Northeast Structural
Genomics Consortium Target Ir66
Length = 177
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 23/191 (12%)
Query: 29 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 88
VG + S +G++G + + ST+ E F W + + + ++L + R H
Sbjct: 5 VGKLGSTYGIRGWLRIYSSTEQAESIFDY--QPWFLKI---KGEWQSIELENWRYH--NH 57
Query: 89 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 148
I+ +G+D E A+ L + PELE+G++Y DL+G VV E G GTV
Sbjct: 58 EIIVKLKGVDDREAAQILANVEIGVDLSVFPELEEGDYYWHDLIGCTVVNLE-GYTXGTV 116
Query: 149 VNVFNSGANDLLHVMCYSSVNVIXXXXXXXXXXXXXXXRLVWIPFV-EEIVPIVDMNGRE 207
+G+ND+L V + RL IPF+ E++V VD+ +
Sbjct: 117 TEXXETGSNDVLVVKANTK------------DAFGKQERL--IPFLYEQVVKRVDLTTKT 162
Query: 208 MQITPPKGLLE 218
+++ G LE
Sbjct: 163 IEVDWDAGFLE 173
>pdb|2DYI|A Chain A, Crystal Structure Of 16s Ribosomal Rna Processing Protein
Rimm From Thermus Thermophilus Hb8
pdb|3A1P|A Chain A, Structure Of Ribosome Maturation Protein Rimm And
Ribosomal Protein S19
pdb|3A1P|C Chain C, Structure Of Ribosome Maturation Protein Rimm And
Ribosomal Protein S19
Length = 162
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 91 ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVN 150
++ G+ A LVG + A D P LE+G +Y L+G+ V ++ G VG VV+
Sbjct: 54 VVHLAGVTDRTLAEALVGLRVYAEVADLPPLEEGRYYYFALIGLPVYVE--GRQVGEVVD 111
Query: 151 VFNSGANDLL 160
+ ++GA D+L
Sbjct: 112 ILDAGAQDVL 121
>pdb|1JVD|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVD|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVG|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
pdb|1JVG|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
Length = 522
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 60/138 (43%), Gaps = 7/138 (5%)
Query: 404 NRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKIL 463
N+ +P ++ M+ ++ F + +F + V F ++ LP +S KI+
Sbjct: 156 NKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAMSFDG------KII 209
Query: 464 MKSPWETLQAPXXXXXXXXXXXXHNIIKNLDELGVEYIQI-CTANPRNAIGNSMFLGFVK 522
++ + AP NI++++++ G+ I + C N + + F+GF
Sbjct: 210 LEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCI 269
Query: 523 SCGADIGFQISEYAKHSE 540
GAD G ++ E +E
Sbjct: 270 QKGADCGAKVVEKTNPTE 287
>pdb|1JV1|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV1|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV3|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
pdb|1JV3|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
Length = 505
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 60/138 (43%), Gaps = 7/138 (5%)
Query: 404 NRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKIL 463
N+ +P ++ M+ ++ F + +F + V F ++ LP +S KI+
Sbjct: 156 NKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAMSFDG------KII 209
Query: 464 MKSPWETLQAPXXXXXXXXXXXXHNIIKNLDELGVEYIQI-CTANPRNAIGNSMFLGFVK 522
++ + AP NI++++++ G+ I + C N + + F+GF
Sbjct: 210 LEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCI 269
Query: 523 SCGADIGFQISEYAKHSE 540
GAD G ++ E +E
Sbjct: 270 QKGADCGAKVVEKTNPTE 287
>pdb|1VM8|A Chain A, Crystal Structure Of Udp-N-Acetylglucosamine
Pyrophosphorylase (Agx2) From Mus Musculus At 2.50 A
Resolution
pdb|1VM8|B Chain B, Crystal Structure Of Udp-N-Acetylglucosamine
Pyrophosphorylase (Agx2) From Mus Musculus At 2.50 A
Resolution
Length = 534
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/138 (20%), Positives = 56/138 (40%), Gaps = 7/138 (5%)
Query: 404 NRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKIL 463
N+ ++P + + ++ F + F + V F ++ LP S KI+
Sbjct: 168 NKCTIPWYIXTSGRTXESTKEFFTKHKFFGLKKENVVFFQQGXLPAXSFDG------KII 221
Query: 464 MKSPWETLQAPXXXXXXXXXXXXHNIIKNLDELGVEYIQI-CTANPRNAIGNSMFLGFVK 522
++ + AP NI+++ ++ G+ I + C N + + F+GF
Sbjct: 222 LEEKNKVSXAPDGNGGLYRALAAQNIVEDXEQRGICSIHVYCVDNILVKVADPRFIGFCI 281
Query: 523 SCGADIGFQISEYAKHSE 540
GAD G ++ E +E
Sbjct: 282 QKGADCGAKVVEKTNPTE 299
>pdb|3T2L|A Chain A, Crystal Structure Of A Putative Cell Adhesion Protein
(Bf1858) From Bacteroides Fragilis Nctc 9343 At 2.33 A
Resolution
Length = 308
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 15/78 (19%)
Query: 320 LKISGEGSLGPCARAKKVVTNSSLQKKGN-HLVSEGKKAMVLVVHNSEEGN-------EC 371
LKIS E PC +K + NS+L KKG ++ +G +H+SE GN +
Sbjct: 156 LKISRENYFXPCEISKITLKNSNLIKKGTINIAVDGS------IHSSETGNYDLTTVTDA 209
Query: 372 DPHSV-VSESTANKSLAL 388
PH++ V ES + L +
Sbjct: 210 SPHTLSVGESYVCRVLXI 227
>pdb|3GLJ|A Chain A, A Polymorph Of Carboxypeptidase B Zymogen Structure
Length = 401
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 19/89 (21%)
Query: 502 QICTANP----RNAIG-----NSMFLGFVKSCGA-------DIGFQISEYAKHSEERF-- 543
Q+ + NP R AIG N+++L V G D GF E+ H+ ++
Sbjct: 116 QVTSENPDLISRTAIGTTFLGNNIYLLKVGKPGPNKPAIFMDCGFHAREWISHAFCQWFV 175
Query: 544 -NTMLSMNVMKKLTNHINKLEFYATPKLN 571
+L+ +T +NKL+FY P LN
Sbjct: 176 REAVLTYGYESHMTEFLNKLDFYVLPVLN 204
>pdb|1Z5R|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
pdb|1Z5R|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
pdb|1Z5R|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
pdb|1ZG7|A Chain A, Crystal Structure Of 2-(5-{[amino(Imino)methyl]amino}-2-
Chlorophenyl)-3-Sulfanylpropanoic Acid Bound To
Activated Porcine Pancreatic Carboxypeptidase B
pdb|1ZG7|B Chain B, Crystal Structure Of 2-(5-{[amino(Imino)methyl]amino}-2-
Chlorophenyl)-3-Sulfanylpropanoic Acid Bound To
Activated Porcine Pancreatic Carboxypeptidase B
pdb|1ZG7|C Chain C, Crystal Structure Of 2-(5-{[amino(Imino)methyl]amino}-2-
Chlorophenyl)-3-Sulfanylpropanoic Acid Bound To
Activated Porcine Pancreatic Carboxypeptidase B
pdb|1ZG8|A Chain A, Crystal Structure Of (R)-2-(3-{[amino(Imino)
Methyl]amino}phenyl)-3-Sulfanylpropanoic Acid Bound To
Activated Porcine Pancreatic Carboxypeptidase B
pdb|1ZG8|B Chain B, Crystal Structure Of (R)-2-(3-{[amino(Imino)
Methyl]amino}phenyl)-3-Sulfanylpropanoic Acid Bound To
Activated Porcine Pancreatic Carboxypeptidase B
pdb|1ZG8|C Chain C, Crystal Structure Of (R)-2-(3-{[amino(Imino)
Methyl]amino}phenyl)-3-Sulfanylpropanoic Acid Bound To
Activated Porcine Pancreatic Carboxypeptidase B
pdb|1ZG9|A Chain A, Crystal Structure Of 5-{[amino(Imino)methyl]amino}-2-
(Sulfanylmethyl)pentanoic Acid Bound To Activated
Porcine Pancreatic Carboxypeptidase B
pdb|1ZG9|B Chain B, Crystal Structure Of 5-{[amino(Imino)methyl]amino}-2-
(Sulfanylmethyl)pentanoic Acid Bound To Activated
Porcine Pancreatic Carboxypeptidase B
pdb|1ZG9|C Chain C, Crystal Structure Of 5-{[amino(Imino)methyl]amino}-2-
(Sulfanylmethyl)pentanoic Acid Bound To Activated
Porcine Pancreatic Carboxypeptidase B
pdb|2JEW|A Chain A, Crystal Structure Of ( (2s)-5-Amino-2-((1-N-Propyl-1h-
Imidazol-4-Yl)methyl)pentanoic Acid) Uk396,082 A Tafia
Inhibitor, Bound To Activated Porcine Pancreatic
Carboxypeptidaseb
pdb|2PIY|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
(S)-2-(3-Aminomethyl-Phenyl)-3-{hydroxy-
[(R)-2-Methyl-1-(3-Phenyl-Propane-1-Sulfonylamino)-
Propyl]- Phosphinoyl}-Propionic Acid {zk 528} Complex
pdb|2PIY|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
(S)-2-(3-Aminomethyl-Phenyl)-3-{hydroxy-
[(R)-2-Methyl-1-(3-Phenyl-Propane-1-Sulfonylamino)-
Propyl]- Phosphinoyl}-Propionic Acid {zk 528} Complex
pdb|2PIY|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
(S)-2-(3-Aminomethyl-Phenyl)-3-{hydroxy-
[(R)-2-Methyl-1-(3-Phenyl-Propane-1-Sulfonylamino)-
Propyl]- Phosphinoyl}-Propionic Acid {zk 528} Complex
pdb|2PIZ|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Guanidino-Phenyl)-3-[hydroxy-(3-
Phenyl-Propyl)-Phosphinoyl]-Propionic Acid Complex
pdb|2PIZ|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Guanidino-Phenyl)-3-[hydroxy-(3-
Phenyl-Propyl)-Phosphinoyl]-Propionic Acid Complex
pdb|2PIZ|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Guanidino-Phenyl)-3-[hydroxy-(3-
Phenyl-Propyl)-Phosphinoyl]-Propionic Acid Complex
pdb|2PJ0|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-1-Benzyloxycarbonylamino-2-Methyl-
Propyl)-Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-
Acetic Acid Complex
pdb|2PJ0|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-1-Benzyloxycarbonylamino-2-Methyl-
Propyl)-Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-
Acetic Acid Complex
pdb|2PJ0|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-1-Benzyloxycarbonylamino-2-Methyl-
Propyl)-Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-
Acetic Acid Complex
pdb|2PJ1|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B (3-aminomethyl-phenyl)-[((r)-1-
Benzyloxycarbonylamino-2-methyl-propyl)-hydroxy-
Phosphinoyloxy]-acetic Acid Complex
pdb|2PJ1|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B (3-aminomethyl-phenyl)-[((r)-1-
Benzyloxycarbonylamino-2-methyl-propyl)-hydroxy-
Phosphinoyloxy]-acetic Acid Complex
pdb|2PJ1|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B (3-aminomethyl-phenyl)-[((r)-1-
Benzyloxycarbonylamino-2-methyl-propyl)-hydroxy-
Phosphinoyloxy]-acetic Acid Complex
pdb|2PJ2|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-[((R)-1-
Benzyloxycarbonylamino-2-Methyl-Propyl)-Hydroxy-
Phosphinoyl]-Propionic Acid Complex
pdb|2PJ2|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-[((R)-1-
Benzyloxycarbonylamino-2-Methyl-Propyl)-Hydroxy-
Phosphinoyl]-Propionic Acid Complex
pdb|2PJ2|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-[((R)-1-
Benzyloxycarbonylamino-2-Methyl-Propyl)-Hydroxy-
Phosphinoyl]-Propionic Acid Complex
pdb|2PJ3|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B (3-Guanidino-Phenyl)-{hydroxy-[(R)-2-
Methyl-1-(3-Phenyl-Propionylamino)-Propyl]-
Phosphinoyloxy}- Acetic Acid Complex
pdb|2PJ3|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B (3-Guanidino-Phenyl)-{hydroxy-[(R)-2-
Methyl-1-(3-Phenyl-Propionylamino)-Propyl]-
Phosphinoyloxy}- Acetic Acid Complex
pdb|2PJ3|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B (3-Guanidino-Phenyl)-{hydroxy-[(R)-2-
Methyl-1-(3-Phenyl-Propionylamino)-Propyl]-
Phosphinoyloxy}- Acetic Acid Complex
pdb|2PJ4|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-Benzyloxycarbonylamino-Cyclohexyl-
Methyl)-Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-
Acetic Acid Complex
pdb|2PJ4|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-Benzyloxycarbonylamino-Cyclohexyl-
Methyl)-Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-
Acetic Acid Complex
pdb|2PJ5|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-1-Benzyloxycarbonylamino-Hexyl)-
Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-Acetic Acid
Complex
pdb|2PJ5|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-1-Benzyloxycarbonylamino-Hexyl)-
Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-Acetic Acid
Complex
pdb|2PJ5|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-1-Benzyloxycarbonylamino-Hexyl)-
Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-Acetic Acid
Complex
pdb|2PJ6|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-{hydroxy-
[(R)-2-Methyl-1-(2-Phenyl-Ethanesulfonylamino)-Propyl]-
Phosphinoyl}-Propionic Acid Complex
pdb|2PJ7|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-[((R)-1-
Benzenesulfonylamino-2-Methyl-Propyl)-Hydroxy-
Phosphinoyl]- Propionic Acid Complex
pdb|2PJ7|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-[((R)-1-
Benzenesulfonylamino-2-Methyl-Propyl)-Hydroxy-
Phosphinoyl]- Propionic Acid Complex
pdb|2PJ7|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-[((R)-1-
Benzenesulfonylamino-2-Methyl-Propyl)-Hydroxy-
Phosphinoyl]- Propionic Acid Complex
pdb|2PJ8|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-{[(R)-1-
(Biphenyl-4-Sulfonylamino)-2-Methyl-Propyl]-Hydroxy-
Phosphinoyl}-Propionic Acid Complex
pdb|2PJ8|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-{[(R)-1-
(Biphenyl-4-Sulfonylamino)-2-Methyl-Propyl]-Hydroxy-
Phosphinoyl}-Propionic Acid Complex
pdb|2PJ8|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-{[(R)-1-
(Biphenyl-4-Sulfonylamino)-2-Methyl-Propyl]-Hydroxy-
Phosphinoyl}-Propionic Acid Complex
pdb|2PJ9|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-{[(R)-1-
(Benzo[1,2,
5]thiadiazole-4-Sulfonylamino)-2-Methyl-Propyl]-
Hydroxy-Phosphinoyl}-Propionic Acid Complex
pdb|2PJA|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
3-{[(R)-1-((S)-2-Benzyloxycarbonylamino-
3-Phenyl-Propionylamino)-2-Methyl-Propyl]-Hydroxy-
Phosphinoyl}-2-(3-Guanidino-Phenyl)-Propionic Acid
Complex
pdb|2PJA|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
3-{[(R)-1-((S)-2-Benzyloxycarbonylamino-
3-Phenyl-Propionylamino)-2-Methyl-Propyl]-Hydroxy-
Phosphinoyl}-2-(3-Guanidino-Phenyl)-Propionic Acid
Complex
pdb|2PJA|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
3-{[(R)-1-((S)-2-Benzyloxycarbonylamino-
3-Phenyl-Propionylamino)-2-Methyl-Propyl]-Hydroxy-
Phosphinoyl}-2-(3-Guanidino-Phenyl)-Propionic Acid
Complex
pdb|2PJB|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
2-(3-aminomethyl-phenyl)-3-{[1-((s)-2-
Benzyloxycarbonylamino-3-phenyl-propane-1-
sulfonylamino)-2-
Methyl-propyl]-hydroxy-phosphinoyl}-propionic Acid
Complex
pdb|2PJB|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
2-(3-aminomethyl-phenyl)-3-{[1-((s)-2-
Benzyloxycarbonylamino-3-phenyl-propane-1-
sulfonylamino)-2-
Methyl-propyl]-hydroxy-phosphinoyl}-propionic Acid
Complex
pdb|2PJB|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
2-(3-aminomethyl-phenyl)-3-{[1-((s)-2-
Benzyloxycarbonylamino-3-phenyl-propane-1-
sulfonylamino)-2-
Methyl-propyl]-hydroxy-phosphinoyl}-propionic Acid
Complex
pdb|2PJC|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
({(R)-1-[(S)-2-Benzyloxycarbonylamino-3-
(4-Hydroxy-Phenyl)-Propionylamino]-2-Methyl-Propyl}-
Hydroxy-Phosphinoyloxy)-(3-Guanidino-Phenyl)-Acetic Acid
Complex
pdb|2PJC|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
({(R)-1-[(S)-2-Benzyloxycarbonylamino-3-
(4-Hydroxy-Phenyl)-Propionylamino]-2-Methyl-Propyl}-
Hydroxy-Phosphinoyloxy)-(3-Guanidino-Phenyl)-Acetic Acid
Complex
pdb|2PJC|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
({(R)-1-[(S)-2-Benzyloxycarbonylamino-3-
(4-Hydroxy-Phenyl)-Propionylamino]-2-Methyl-Propyl}-
Hydroxy-Phosphinoyloxy)-(3-Guanidino-Phenyl)-Acetic Acid
Complex
Length = 306
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 19/89 (21%)
Query: 502 QICTANP----RNAIG-----NSMFLGFVKSCGA-------DIGFQISEYAKHSEERF-- 543
Q+ + NP R AIG N+++L V G D GF E+ H+ ++
Sbjct: 21 QVTSENPDLISRTAIGTTFLGNNIYLLKVGKPGPNKPAIFMDCGFHAREWISHAFCQWFV 80
Query: 544 -NTMLSMNVMKKLTNHINKLEFYATPKLN 571
+L+ +T +NKL+FY P LN
Sbjct: 81 REAVLTYGYESHMTEFLNKLDFYVLPVLN 109
>pdb|2VR2|A Chain A, Human Dihydropyrimidinase
Length = 541
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 295 IEIPSKRWNATELMNATKAELMISSLKISGEGSLGPCARAKKVVTNSSLQKKGNHLVSEG 354
I + K N+ ++ A K M++ L++ S R K++ + + + L++EG
Sbjct: 170 ILVQDKGVNSFKMFMAYKDLYMVTDLELYEAFS-----RCKEIGAIAQVHAENGDLIAEG 224
Query: 355 KKAMVLVVHNSEEGNE-CDPHSVVSEST 381
K M+ + EG+E C P +V +E+T
Sbjct: 225 AKKMLALGITGPEGHELCRPEAVEAEAT 252
>pdb|3C5W|A Chain A, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 232
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 541 ERFNTMLSMNVMKKLTNHINKLEFYATPKLNSHVEKVDKEF--IDVIPAA------PNSY 592
E F+ L+ M L +H+ + AT L VEK KE+ +IP PN Y
Sbjct: 80 EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPN-Y 138
Query: 593 ELRSSIYSCLNACSLDKVCVMEIT 616
R + C+N L +VC +IT
Sbjct: 139 LHRMTTLFCINV--LSEVCGQDIT 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,829,261
Number of Sequences: 62578
Number of extensions: 656705
Number of successful extensions: 1825
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1817
Number of HSP's gapped (non-prelim): 17
length of query: 617
length of database: 14,973,337
effective HSP length: 105
effective length of query: 512
effective length of database: 8,402,647
effective search space: 4302155264
effective search space used: 4302155264
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)