Query 007117
Match_columns 617
No_of_seqs 294 out of 1724
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 19:09:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007117.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007117hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02435 probable UDP-N-acetyl 100.0 2.9E-85 6.4E-90 714.5 31.8 336 244-616 20-411 (493)
2 PTZ00339 UDP-N-acetylglucosami 100.0 6.8E-78 1.5E-82 658.5 26.6 344 250-616 2-402 (482)
3 KOG2388 UDP-N-acetylglucosamin 100.0 1.1E-76 2.4E-81 631.2 18.5 340 247-616 4-393 (477)
4 cd04193 UDPGlcNAc_PPase UDPGlc 100.0 8.9E-68 1.9E-72 557.2 23.6 263 342-616 2-311 (323)
5 PLN02830 UDP-sugar pyrophospho 100.0 9.1E-62 2E-66 543.3 26.2 324 242-590 23-369 (615)
6 cd06424 UGGPase UGGPase cataly 100.0 4E-61 8.6E-66 501.0 18.2 243 356-616 1-303 (315)
7 cd00897 UGPase_euk Eukaryotic 100.0 2.8E-60 6E-65 493.1 22.5 233 354-616 2-277 (300)
8 COG4284 UDP-glucose pyrophosph 100.0 3.8E-56 8.3E-61 475.4 21.2 332 246-616 15-395 (472)
9 PF01704 UDPGP: UTP--glucose-1 100.0 1.2E-55 2.7E-60 478.0 18.0 244 345-616 46-335 (420)
10 PLN02474 UTP--glucose-1-phosph 100.0 1.8E-53 3.8E-58 462.7 23.7 232 350-616 76-352 (469)
11 cd04180 UGPase_euk_like Eukary 100.0 4E-44 8.7E-49 368.9 18.4 246 356-616 1-256 (266)
12 PRK00122 rimM 16S rRNA-process 100.0 9.8E-42 2.1E-46 330.0 20.5 172 20-218 1-172 (172)
13 COG0806 RimM RimM protein, req 100.0 1.1E-41 2.4E-46 327.4 18.2 174 20-218 1-174 (174)
14 PRK14590 rimM 16S rRNA-process 100.0 9.6E-41 2.1E-45 322.3 18.4 169 27-219 1-171 (171)
15 PRK14591 rimM 16S rRNA-process 100.0 1.4E-40 2.9E-45 320.9 19.3 167 24-216 3-169 (169)
16 PRK14592 rimM 16S rRNA-process 100.0 3.9E-40 8.4E-45 316.7 18.6 163 25-216 1-163 (165)
17 PRK14593 rimM 16S rRNA-process 100.0 7.4E-40 1.6E-44 319.9 17.8 176 24-219 2-183 (184)
18 TIGR02273 16S_RimM 16S rRNA pr 100.0 2E-39 4.4E-44 311.8 19.5 165 26-215 1-165 (165)
19 PRK14594 rimM 16S rRNA-process 100.0 2.8E-39 6.1E-44 310.9 19.1 163 26-214 1-163 (166)
20 PRK13829 rimM 16S rRNA-process 100.0 8.5E-38 1.8E-42 299.5 17.7 161 25-218 2-162 (162)
21 PRK13828 rimM 16S rRNA-process 100.0 2.5E-37 5.4E-42 296.1 17.7 156 38-221 1-156 (161)
22 KOG2638 UDP-glucose pyrophosph 100.0 1.3E-29 2.8E-34 264.7 23.6 322 231-615 14-377 (498)
23 PF01782 RimM: RimM N-terminal 99.7 7.1E-18 1.5E-22 144.4 10.8 84 28-117 1-84 (84)
24 PF05239 PRC: PRC-barrel domai 98.6 2.9E-07 6.3E-12 77.3 8.6 78 123-217 1-79 (79)
25 cd00226 PRCH Photosynthetic re 96.6 0.0059 1.3E-07 62.1 7.7 88 107-218 108-215 (246)
26 TIGR02092 glgD glucose-1-phosp 95.4 0.11 2.4E-06 56.1 11.1 139 354-529 1-145 (369)
27 cd02508 ADP_Glucose_PP ADP-glu 95.0 0.51 1.1E-05 46.3 13.4 154 358-555 1-162 (200)
28 COG1213 Predicted sugar nucleo 94.7 0.074 1.6E-06 54.1 6.5 66 356-431 4-70 (239)
29 PF01128 IspD: 2-C-methyl-D-er 94.3 0.12 2.6E-06 52.5 7.2 64 356-428 1-65 (221)
30 cd04197 eIF-2B_epsilon_N The N 94.3 0.6 1.3E-05 46.5 12.2 129 358-532 3-143 (217)
31 PF12804 NTP_transf_3: MobA-li 94.1 0.52 1.1E-05 44.2 10.6 139 358-557 1-143 (160)
32 cd02509 GDP-M1P_Guanylyltransf 94.0 0.11 2.4E-06 54.1 6.4 63 358-428 3-70 (274)
33 PRK05293 glgC glucose-1-phosph 93.9 0.92 2E-05 49.2 13.7 71 354-435 2-77 (380)
34 PRK13385 2-C-methyl-D-erythrit 93.9 0.21 4.4E-06 50.4 7.9 65 355-428 2-67 (230)
35 PRK00844 glgC glucose-1-phosph 93.4 1.4 2.9E-05 48.6 14.1 140 354-530 4-149 (407)
36 TIGR02623 G1P_cyt_trans glucos 93.3 1.6 3.5E-05 44.8 13.5 147 358-533 2-153 (254)
37 cd02503 MobA MobA catalyzes th 93.3 1.9 4E-05 41.3 13.2 137 357-557 2-141 (181)
38 cd04189 G1P_TT_long G1P_TT_lon 93.2 0.31 6.7E-06 48.8 7.9 67 357-434 2-72 (236)
39 COG0836 {ManC} Mannose-1-phosp 93.1 0.2 4.4E-06 53.2 6.5 86 356-452 2-95 (333)
40 cd02540 GT2_GlmU_N_bac N-termi 93.1 1.5 3.2E-05 43.6 12.5 60 358-428 1-61 (229)
41 cd02524 G1P_cytidylyltransfera 93.0 1 2.3E-05 45.9 11.5 139 358-533 1-153 (253)
42 cd06422 NTP_transferase_like_1 92.8 0.37 8E-06 47.9 7.8 126 358-535 2-136 (221)
43 PF00483 NTP_transferase: Nucl 92.7 0.17 3.7E-06 50.9 5.3 127 358-528 2-133 (248)
44 PLN02728 2-C-methyl-D-erythrit 92.6 0.31 6.7E-06 50.4 7.0 65 354-427 23-88 (252)
45 PRK15480 glucose-1-phosphate t 92.6 0.43 9.3E-06 50.4 8.2 76 356-444 4-83 (292)
46 PRK14359 glmU bifunctional N-a 92.5 2.5 5.4E-05 46.5 14.4 62 355-428 2-64 (430)
47 PLN02241 glucose-1-phosphate a 92.4 1.4 3.1E-05 49.0 12.5 147 355-530 3-154 (436)
48 cd04181 NTP_transferase NTP_tr 92.3 2.2 4.9E-05 41.7 12.6 127 358-534 1-132 (217)
49 TIGR01207 rmlA glucose-1-phosp 92.3 0.43 9.3E-06 50.2 7.8 74 358-444 2-79 (286)
50 PRK02862 glgC glucose-1-phosph 92.3 1.8 3.8E-05 48.2 13.0 139 355-530 3-148 (429)
51 PRK14356 glmU bifunctional N-a 92.0 2.5 5.4E-05 47.0 13.9 61 355-426 5-66 (456)
52 COG0746 MobA Molybdopterin-gua 91.8 2 4.4E-05 42.6 11.4 141 355-557 4-145 (192)
53 cd02538 G1P_TT_short G1P_TT_sh 91.4 0.75 1.6E-05 46.4 8.2 67 358-434 3-73 (240)
54 cd04198 eIF-2B_gamma_N The N-t 91.4 2.5 5.5E-05 42.0 11.8 130 358-534 3-137 (214)
55 TIGR00454 conserved hypothetic 91.2 0.5 1.1E-05 46.4 6.3 61 357-428 2-62 (183)
56 cd06425 M1P_guanylylT_B_like_N 91.1 4.1 8.9E-05 40.8 13.1 60 358-428 3-66 (233)
57 cd06426 NTP_transferase_like_2 91.0 0.63 1.4E-05 46.0 7.1 65 358-433 1-69 (220)
58 TIGR01208 rmlA_long glucose-1- 90.9 0.81 1.7E-05 49.1 8.3 67 358-434 2-72 (353)
59 PRK05450 3-deoxy-manno-octulos 90.8 4.3 9.3E-05 40.9 13.1 59 355-428 2-60 (245)
60 COG1208 GCD1 Nucleoside-diphos 90.8 0.68 1.5E-05 50.3 7.6 76 357-446 3-82 (358)
61 COG1209 RfbA dTDP-glucose pyro 90.7 0.64 1.4E-05 48.4 6.8 157 358-541 3-165 (286)
62 COG2266 GTP:adenosylcobinamide 90.6 0.56 1.2E-05 45.8 5.9 61 357-429 2-62 (177)
63 cd06915 NTP_transferase_WcbM_l 90.3 0.79 1.7E-05 45.0 7.0 61 358-429 1-65 (223)
64 KOG1322 GDP-mannose pyrophosph 90.0 3.8 8.2E-05 43.9 11.9 137 355-536 9-150 (371)
65 cd02517 CMP-KDO-Synthetase CMP 90.0 7.8 0.00017 38.9 14.0 60 355-428 1-60 (239)
66 PRK14489 putative bifunctional 89.7 5.8 0.00013 43.2 13.6 143 355-557 5-151 (366)
67 PRK15460 cpsB mannose-1-phosph 89.0 0.95 2.1E-05 51.1 7.1 85 355-451 5-96 (478)
68 TIGR01105 galF UTP-glucose-1-p 88.9 1.3 2.7E-05 47.0 7.6 62 356-428 4-69 (297)
69 cd04182 GT_2_like_f GT_2_like_ 88.5 0.96 2.1E-05 43.0 5.9 51 356-417 1-51 (186)
70 cd02513 CMP-NeuAc_Synthase CMP 87.7 16 0.00034 36.0 14.3 131 355-536 1-138 (223)
71 TIGR01479 GMP_PMI mannose-1-ph 87.6 1.5 3.3E-05 49.3 7.7 62 358-428 3-69 (468)
72 cd06428 M1P_guanylylT_A_like_N 87.5 9.1 0.0002 39.0 12.8 61 359-429 2-68 (257)
73 PRK00725 glgC glucose-1-phosph 86.8 7.3 0.00016 43.2 12.3 139 355-532 15-163 (425)
74 COG1873 Protein implicated in 86.4 2.4 5.2E-05 36.8 6.5 72 125-213 5-79 (87)
75 PRK00560 molybdopterin-guanine 85.9 0.9 1.9E-05 44.9 4.2 38 351-391 4-42 (196)
76 PRK10122 GalU regulator GalF; 85.2 3.1 6.7E-05 44.0 8.0 62 355-427 3-68 (297)
77 cd02516 CDP-ME_synthetase CDP- 85.2 1.8 3.9E-05 42.7 6.0 55 356-419 1-56 (218)
78 cd02523 PC_cytidylyltransferas 85.0 6.6 0.00014 39.1 10.0 60 358-428 1-64 (229)
79 TIGR00453 ispD 2-C-methyl-D-er 84.8 1.8 3.8E-05 42.9 5.7 61 357-426 1-62 (217)
80 TIGR03310 matur_ygfJ molybdenu 84.7 2.2 4.9E-05 40.8 6.2 142 358-557 2-147 (188)
81 PRK14355 glmU bifunctional N-a 84.2 15 0.00033 40.9 13.4 62 355-427 3-65 (459)
82 TIGR01173 glmU UDP-N-acetylglu 83.3 2 4.3E-05 47.4 5.9 60 358-428 3-63 (451)
83 PRK00155 ispD 2-C-methyl-D-ery 83.3 2.9 6.3E-05 41.8 6.6 54 355-417 3-57 (227)
84 PRK14360 glmU bifunctional N-a 82.9 3.4 7.4E-05 45.8 7.5 62 356-428 2-64 (450)
85 PRK14352 glmU bifunctional N-a 82.8 2.8 6E-05 47.2 6.9 63 355-428 4-67 (482)
86 COG0448 GlgC ADP-glucose pyrop 82.2 8.9 0.00019 42.1 10.0 144 354-533 4-154 (393)
87 PRK13368 3-deoxy-manno-octulos 81.3 29 0.00063 34.7 13.0 60 355-428 2-61 (238)
88 PRK14353 glmU bifunctional N-a 81.2 2.7 5.8E-05 46.5 5.9 62 355-427 5-67 (446)
89 COG1211 IspD 4-diphosphocytidy 81.1 3.4 7.3E-05 42.3 6.1 65 354-427 3-68 (230)
90 PRK09382 ispDF bifunctional 2- 81.1 2.8 6E-05 46.0 5.8 35 355-391 5-40 (378)
91 TIGR02665 molyb_mobA molybdopt 80.7 1.8 3.9E-05 41.6 3.9 56 497-557 87-146 (186)
92 TIGR03202 pucB xanthine dehydr 80.6 2.9 6.3E-05 40.6 5.3 68 478-557 82-153 (190)
93 COG2451 Ribosomal protein L35A 80.4 2.8 6E-05 36.7 4.4 27 88-114 26-52 (100)
94 PRK00317 mobA molybdopterin-gu 79.4 2.3 5E-05 41.4 4.1 35 355-391 3-37 (193)
95 PRK02726 molybdopterin-guanine 76.7 2.8 6E-05 41.5 3.9 34 355-391 7-40 (200)
96 PRK14358 glmU bifunctional N-a 75.7 5 0.00011 45.3 6.0 62 355-427 7-69 (481)
97 TIGR01099 galU UTP-glucose-1-p 75.0 6 0.00013 40.3 5.9 60 358-428 3-66 (260)
98 PRK04337 50S ribosomal protein 74.8 3.3 7.1E-05 36.0 3.2 29 87-115 19-48 (87)
99 TIGR00466 kdsB 3-deoxy-D-manno 74.1 9.2 0.0002 39.0 7.0 30 358-391 2-31 (238)
100 PRK14500 putative bifunctional 73.2 4 8.7E-05 44.3 4.3 35 354-391 159-193 (346)
101 cd02541 UGPase_prokaryotic Pro 73.1 7.1 0.00015 40.0 6.0 60 358-428 3-66 (267)
102 PRK14357 glmU bifunctional N-a 72.4 27 0.00059 38.6 10.8 58 357-426 2-60 (448)
103 PRK09451 glmU bifunctional N-a 72.1 8.2 0.00018 43.0 6.6 62 355-427 5-67 (456)
104 PRK14490 putative bifunctional 71.5 4 8.8E-05 44.4 3.9 35 354-391 173-207 (369)
105 TIGR01150 puhA photosynthetic 70.7 13 0.00028 38.2 6.8 82 107-213 111-212 (252)
106 PF14134 DUF4301: Domain of un 67.7 21 0.00046 40.4 8.3 91 403-511 198-296 (513)
107 cd02507 eIF-2B_gamma_N_like Th 66.7 15 0.00031 36.7 6.4 61 358-429 3-67 (216)
108 PTZ00041 60S ribosomal protein 65.3 6.3 0.00014 36.2 3.1 31 86-116 37-68 (120)
109 PF01247 Ribosomal_L35Ae: Ribo 65.0 8.5 0.00018 34.0 3.8 60 87-164 19-79 (95)
110 PRK13389 UTP--glucose-1-phosph 64.5 13 0.00028 39.4 5.8 62 356-428 9-74 (302)
111 TIGR02091 glgC glucose-1-phosp 63.3 6.5 0.00014 42.2 3.4 60 358-428 1-65 (361)
112 cd04183 GT2_BcE_like GT2_BcbE_ 61.9 6.5 0.00014 39.1 2.9 32 358-391 1-36 (231)
113 PRK14354 glmU bifunctional N-a 60.7 17 0.00037 40.3 6.2 61 355-426 2-63 (458)
114 KOG0887 60S ribosomal protein 60.6 12 0.00025 33.6 3.8 50 88-153 30-80 (111)
115 PTZ00041 60S ribosomal protein 60.3 9.5 0.00021 35.1 3.3 31 26-56 78-108 (120)
116 PLN02917 CMP-KDO synthetase 54.0 35 0.00076 36.1 6.9 33 355-391 47-79 (293)
117 PRK04337 50S ribosomal protein 53.9 14 0.00031 32.1 3.2 29 26-54 51-79 (87)
118 COG3881 PRC-barrel domain cont 53.1 9.9 0.00021 36.5 2.3 68 128-214 4-72 (176)
119 PF14969 DUF4508: Domain of un 47.2 15 0.00032 32.6 2.3 37 258-294 59-96 (98)
120 TIGR02888 spore_YlmC_YmxH spor 46.4 16 0.00035 30.9 2.4 36 127-162 1-41 (76)
121 PRK13149 H/ACA RNA-protein com 44.9 40 0.00086 28.3 4.5 33 132-165 26-58 (73)
122 PF01247 Ribosomal_L35Ae: Ribo 44.3 21 0.00046 31.6 2.8 32 24-55 57-88 (95)
123 PF13106 DUF3961: Domain of un 43.7 13 0.00028 27.6 1.1 15 429-443 4-21 (40)
124 cd02518 GT2_SpsF SpsF is a gly 40.3 90 0.0019 31.1 7.1 142 358-557 2-148 (233)
125 PF09939 DUF2171: Uncharacteri 39.3 1.5E+02 0.0032 24.7 6.8 56 133-212 5-60 (67)
126 PF11460 DUF3007: Protein of u 38.7 25 0.00054 31.6 2.4 35 248-282 70-104 (104)
127 COG2451 Ribosomal protein L35A 38.1 38 0.00082 29.9 3.3 31 25-55 57-87 (100)
128 COG3881 PRC-barrel domain cont 37.9 38 0.00082 32.7 3.6 68 89-162 50-120 (176)
129 COG4750 LicC CTP:phosphocholin 36.2 42 0.0009 33.7 3.7 28 358-391 3-30 (231)
130 KOG1460 GDP-mannose pyrophosph 35.3 6.1E+02 0.013 27.4 13.4 128 472-616 86-244 (407)
131 COG3277 GAR1 RNA-binding prote 33.1 78 0.0017 28.3 4.6 32 132-164 27-58 (98)
132 COG1210 GalU UDP-glucose pyrop 27.3 86 0.0019 33.2 4.5 62 489-554 145-217 (291)
133 COG1588 POP4 RNase P/RNase MRP 26.1 2.3E+02 0.0051 25.1 6.2 78 125-230 9-91 (95)
134 PRK10834 vancomycin high tempe 24.2 53 0.0012 33.9 2.3 82 345-434 71-162 (239)
135 COG1207 GlmU N-acetylglucosami 23.7 2E+02 0.0044 32.3 6.7 131 355-536 2-136 (460)
136 PRK11058 GTPase HflX; Provisio 23.0 3E+02 0.0064 30.8 8.1 50 244-294 61-113 (426)
137 PF03641 Lysine_decarbox: Poss 22.7 1.4E+02 0.0031 27.5 4.7 50 356-427 55-104 (133)
138 KOG0887 60S ribosomal protein 21.3 2.1E+02 0.0047 25.8 5.1 32 24-55 67-98 (111)
No 1
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=100.00 E-value=2.9e-85 Score=714.50 Aligned_cols=336 Identities=18% Similarity=0.292 Sum_probs=294.0
Q ss_pred HHHHHHHHHHHHcCccccccccCCCCHHHHHHHHHHHhcCCHHHHHHHHHhccCCccccchhhhhhhhhhhhhcccccCC
Q 007117 244 KRLIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKIS 323 (617)
Q Consensus 244 ~~~~~l~~~L~~~gQ~HLl~~~~~l~~~ek~~L~~ql~~iD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp 323 (617)
.+.++|+++|.++||+|||+||++|+++||++|++||.++|++++.+..+....... . ..+.++|+|
T Consensus 20 ~~~~~l~~~l~~~gQ~HLl~~w~~ls~~e~~~L~~qL~~iD~~~l~~~~~~~~~~~~-~------------~~~~i~P~p 86 (493)
T PLN02435 20 APPQALLERLKDYGQEDAFALWDELSPEERDLLVRDIESLDLPRIDRIIRCSLRSQG-L------------PVPAIEPVP 86 (493)
T ss_pred ccHHHHHHHHHHcChHHHHHhhhhCCHHHHHHHHHHHHhcCHHHHHHHHHHHhhccC-C------------chhccCCCC
Confidence 344678999999999999999999999999999999999999998887664332110 0 013467776
Q ss_pred CCCCCCCC--CchhhhccchhHHHhchhhhcCCceEEEEEccCCCCC-CCCCCCc-ccccCCCCcchHHHHHH-HHhhHH
Q 007117 324 GEGSLGPC--ARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEG-NECDPHS-VVSESTANKSLALLQTL-LSDDQR 398 (617)
Q Consensus 324 ~~~~~~~~--~~~~~~~~~~~~~~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK~-~~i~l~s~kslf~l~~~-i~~~~~ 398 (617)
.. .+... .+.+.. .+|+++|+++|++||||||+|||||||| |+..||| ++|++++++||||++++ |+++++
T Consensus 87 ~~-~~~~~~~~~~~~~---~~~~~~Gl~~I~~gkvavvlLAGGqGTRLG~~~PKg~~~Iglps~kslfql~~e~I~~lq~ 162 (493)
T PLN02435 87 EN-SVSTVEERTPEDR---ERWWKMGLKAISEGKLAVVLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQAERILCVQR 162 (493)
T ss_pred hh-hccchhccChHHH---HHHHHHHHHHHhcCCEEEEEeCCCcccccCCCCCccceecCCCCCCcHHHHHHHHHHHHHH
Confidence 65 33321 122222 4799999999999999999999999999 6667999 78999999999999997 888888
Q ss_pred HHhh------cCCCcccEEEeCCccchHHHHHHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccceecccCCCCccc
Q 007117 399 FVKI------ENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQ 472 (617)
Q Consensus 399 l~~~------~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FGl~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~ 472 (617)
+++. +..+.||||||||+.||++|++||++|+||||+++||+||+|+++||++.+ |+++|+++++++|
T Consensus 163 la~~~~~~~~~~~~~IPl~IMTS~~T~~~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~~d------g~i~l~~~~~i~~ 236 (493)
T PLN02435 163 LAAQASSEGPGRPVTIHWYIMTSPFTDEATRKFFESHKYFGLEADQVTFFQQGTLPCVSKD------GKFIMETPFKVAK 236 (493)
T ss_pred HHHhhcccccCCCCceeEEEeCCcchhHHHHHHHHhCCCCCCCccceEEEecCCcceECCC------CCcccCCCccccc
Confidence 7753 135789999999999999999999999999999999999999999999987 8999999999999
Q ss_pred ccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCcccc-cccHHHHHHHHHcCCcEEEEEeeccCCcccc---------
Q 007117 473 APVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNA-IGNSMFLGFVKSCGADIGFQISEYAKHSEER--------- 542 (617)
Q Consensus 473 ~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~-~~DP~flG~~~~~~~d~~~kvV~k~~~~~E~--------- 542 (617)
+|+||||+|.||++||+|++|.++|++|+|||||||+|+ ++||.|||||+.+++||++|||+|+ .|+|+
T Consensus 237 ~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~-~~~EkvG~i~~~~~ 315 (493)
T PLN02435 237 APDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKA-YPQEKVGVFVRRGK 315 (493)
T ss_pred CCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEecccccccccCHHHHHHHHhcCCceEEEeeecC-CCCCceeEEEEecC
Confidence 999999999999999999999999999999999999999 6999999999999999999999998 56653
Q ss_pred ----------------------------------ccceeeHHHHHHhhhhh-ccccccccccCCCcccccCCCcceecCC
Q 007117 543 ----------------------------------FNTMLSMNVMKKLTNHI-NKLEFYATPKLNSHVEKVDKEFIDVIPA 587 (617)
Q Consensus 543 ----------------------------------~~h~fs~~fl~~~~~~~-~~L~~H~a~Kkip~~~~~~~~g~~v~P~ 587 (617)
|+|+||++||+++++.+ .+||||+|+|||||+| .
T Consensus 316 ~g~~~vvEYsEl~~~~~~~~~~~~g~L~~~~gnI~~h~fs~~fL~~~~~~~~~~l~~H~A~Kkip~~~-----------~ 384 (493)
T PLN02435 316 GGPLTVVEYSELDQAMASAINQQTGRLRYCWSNVCLHMFTLDFLNQVANGLEKDSIYHLAEKKIPSIH-----------G 384 (493)
T ss_pred CCCEEEEEeccCCHHHHhccCccccccccchhhHHHhhccHHHHHHHHHhhhhcCCceeeccccCccC-----------C
Confidence 36999999999997643 4699999999999994 2
Q ss_pred CCCeeEEEEEEecccCCCCCCceEEEEec
Q 007117 588 APNSYELRSSIYSCLNACSLDKVCVMEIT 616 (617)
Q Consensus 588 ~pN~~K~E~fifD~f~~~~~~~~~~~ev~ 616 (617)
+|||||||+||||+||||+ +++++||+
T Consensus 385 ~~ngiK~E~FiFDvf~~a~--~~~~~eV~ 411 (493)
T PLN02435 385 YTMGLKLEQFIFDAFPYAP--STALFEVL 411 (493)
T ss_pred CcceEEeeeeeecchhhcC--ceEEEEEc
Confidence 4799999999999999998 99999995
No 2
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=100.00 E-value=6.8e-78 Score=658.51 Aligned_cols=344 Identities=15% Similarity=0.239 Sum_probs=286.3
Q ss_pred HHHHHHcCccccccccCCCCHHHHHHHHHHH-h---cCCHHHHHHHHHhccCCccccchhhhhhhhhhhhhcccccCCCC
Q 007117 250 KKKLREMEQQHVFHGFRFGEKYQTSLLANHI-V---GINSKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKISGE 325 (617)
Q Consensus 250 ~~~L~~~gQ~HLl~~~~~l~~~ek~~L~~ql-~---~iD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~ 325 (617)
.++|.++||+|||+||++|+++||++|.+|| . ++|++.+++.++...........+.. + ..+.....++|+|..
T Consensus 2 ~~~l~~~gQ~hl~~~~~~l~~~e~~~l~~ql~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~p~~~~ 79 (482)
T PTZ00339 2 LKVLTGDGQDHLREALKRRSEGEFTPLATQILSSLTNVDFKHRNAVLEPKLEEYNAEAPVGI-D-IDSIHNCNIEPPNNN 79 (482)
T ss_pred hhhhhhcCHHHHHHHHHhCCHHHHHHHHHHHHHHhhccCHHHHHHHHHHHhhhhhccccccc-c-cccccccccCCCCcc
Confidence 3579999999999999999999999999999 5 89999988887643311110000000 0 000122457888775
Q ss_pred CCCCCC-CchhhhccchhHHHhchhhhcCCceEEEEEccCCCCC-CCCCCCc-ccccCCCCcchHHHHHH-HHhhHHHHh
Q 007117 326 GSLGPC-ARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEG-NECDPHS-VVSESTANKSLALLQTL-LSDDQRFVK 401 (617)
Q Consensus 326 ~~~~~~-~~~~~~~~~~~~~~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK~-~~i~l~s~kslf~l~~~-i~~~~~l~~ 401 (617)
.+.+. .+++.+ .+|++.|+++|++||||+|+||||+||| |...||+ +++++++++||||++++ +++++++++
T Consensus 80 -~~~~~~~~~~~~---~~~~~~Gl~~i~~gkvavViLAGG~GTRLg~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~ 155 (482)
T PTZ00339 80 -TFIDIYEKEKER---KELKESGLEIIKKGEVAVLILAGGLGTRLGSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAV 155 (482)
T ss_pred -cccccccCHHHH---HHHHHhHHHHHhcCCeEEEEECCCCcCcCCCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhh
Confidence 44432 223333 5899999999999999999999999999 5555999 78888899999999996 665555543
Q ss_pred h----cCCCcccEEEeCCccchHHHHHHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCC
Q 007117 402 I----ENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGS 477 (617)
Q Consensus 402 ~----~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FGl~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~Gn 477 (617)
. +.++.||||||||..||+.|++||++|+|||++++||+||.|+++||++.+ + |+++|+++++++|+|+||
T Consensus 156 ~~~~~~~~~~Ip~~IMTS~~t~~~t~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~-~----g~ill~~~~~i~~~P~Gn 230 (482)
T PTZ00339 156 AVSGGGDDPTIYILVLTSSFNHDQTRQFLEENNFFGLDKEQVIFFKQSSLPCYDEN-T----GRFIMSSQGSLCTAPGGN 230 (482)
T ss_pred cccccccCCCCCEEEEeCcchHHHHHHHHHhccccCCCcccEEEEecCCcceEecC-C----CCcccCCCCceeeCCCCC
Confidence 1 124679999999999999999999999999999999999999999999876 3 799999999999999999
Q ss_pred chHHHHHhhCchhHHHHHcCceEEEEEeCCcccc-cccHHHHHHHHHcCC-cEEEEEeeccCCcccc-------------
Q 007117 478 GGVFSLLSSHNIIKNLDELGVEYIQICTANPRNA-IGNSMFLGFVKSCGA-DIGFQISEYAKHSEER------------- 542 (617)
Q Consensus 478 Ggv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~-~~DP~flG~~~~~~~-d~~~kvV~k~~~~~E~------------- 542 (617)
||+|.||+++|+|++|.++|++|+|||||||+|+ .+||+|||||+.+++ +|++||| |+ .|+|+
T Consensus 231 Ggiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~k~~DP~flG~~~~~~~~~~~~kvv-k~-~~~EkvG~~~~~~g~~~v 308 (482)
T PTZ00339 231 GDVFKALAKCSELMDIVRKGIKYVQVISIDNILAKVLDPEFIGLASSFPAHDVLNKCV-KR-EDDESVGVFCLKDYEWQV 308 (482)
T ss_pred cHHHHHHHHCCcHHHHHHcCCEEEEEEecCcccccccCHHHhHHHHHCCchhheeeee-cC-CCCCceeEEEEeCCcccE
Confidence 9999999999999999999999999999999999 599999999999999 9999999 55 35653
Q ss_pred ----------------------------ccceeeHHHHHHhhh--hhccccccccccCCCcccccCCCcceecCCCCCee
Q 007117 543 ----------------------------FNTMLSMNVMKKLTN--HINKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSY 592 (617)
Q Consensus 543 ----------------------------~~h~fs~~fl~~~~~--~~~~L~~H~a~Kkip~~~~~~~~g~~v~P~~pN~~ 592 (617)
|||+||++||++++. ...+||||+|+|||||+| +. . ++||||
T Consensus 309 vEYsEi~~~~~~~~~~~~g~l~f~~gnI~~h~fsl~fl~~~~~~~~~~~l~~H~a~Kkip~~~---~~--~---~~png~ 380 (482)
T PTZ00339 309 VEYTEINERILNNDELLTGELAFNYGNICSHIFSLDFLKKVAANRLYESTPYHAARKKIPYIN---GP--T---DKTMGI 380 (482)
T ss_pred EEEeccChhhhhcccccCCeecccccceEEEEEEHHHHHHHhhhhhhhcCCceeeccccCeeC---CC--C---CCccee
Confidence 369999999999864 345799999999999995 21 1 789999
Q ss_pred EEEEEEecccCCCCCCceEEEEec
Q 007117 593 ELRSSIYSCLNACSLDKVCVMEIT 616 (617)
Q Consensus 593 K~E~fifD~f~~~~~~~~~~~ev~ 616 (617)
|||+|||||||||+ +|+++||.
T Consensus 381 K~E~FiFDvf~~~~--~~~~~ev~ 402 (482)
T PTZ00339 381 KLEAFIFDIFRYAK--NVLILEVD 402 (482)
T ss_pred eehhhhhhHHHhcc--ccceeeec
Confidence 99999999999998 99999996
No 3
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=1.1e-76 Score=631.24 Aligned_cols=340 Identities=20% Similarity=0.267 Sum_probs=296.3
Q ss_pred HHHHHHHHHcCccccccccCCCCHHHHHHHHHHHhcCCHHHHHHHHHhccCCccccchhhhhhhhhhhhhcccccCCCCC
Q 007117 247 IAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKISGEG 326 (617)
Q Consensus 247 ~~l~~~L~~~gQ~HLl~~~~~l~~~ek~~L~~ql~~iD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~ 326 (617)
..++.+|.++||+|||++|++|+++++.+|+.|++.+|++++...+.. ... +.. .....+.|+|...
T Consensus 4 ~~~~~~l~~~Gq~~l~~~w~eL~~~~~~~l~~~ie~l~l~~~~~~~~~---~a~-----~~~-----~~~~~~~p~p~~~ 70 (477)
T KOG2388|consen 4 TKLHLILLEAGQSHLFTQWPELSEADKESLLDQIEVLNLSRIHGLQRI---SAN-----EDS-----KPVGEIRPVPESK 70 (477)
T ss_pred hHHHHHHHHcChHhHhhhchhcCHHHHHHHHHHHHhhcccccchhhhc---Chh-----hcc-----CcccccCCCCccc
Confidence 568889999999999999999999999999999999999987776651 111 000 1123466766642
Q ss_pred CCCC-CCchhhhccchhHHHhchhhhcCCceEEEEEccCCCCC-CCCCCCc-ccccCCCCcchHHHHHH-HHhhHHHHhh
Q 007117 327 SLGP-CARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEG-NECDPHS-VVSESTANKSLALLQTL-LSDDQRFVKI 402 (617)
Q Consensus 327 ~~~~-~~~~~~~~~~~~~~~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK~-~~i~l~s~kslf~l~~~-i~~~~~l~~~ 402 (617)
.... ....+.. +.|+..|+.+|++|++|+++|||||||| |...||| +++++++++||||+|++ |..++.+++.
T Consensus 71 ~~~~~~~~~~d~---d~~~~~G~~~i~~~~~a~~llaGgqgtRLg~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~ 147 (477)
T KOG2388|consen 71 SWPLKERGLDDV---DQWWKEGLRLIAEGKVAVVLLAGGQGTRLGSSGPKGCYPIGLPSGKSLFQIQAERILKLQELASM 147 (477)
T ss_pred cceecccCchhh---hHHHhcChhhhhcCcceEEEeccCceeeeccCCCcceeecCCccccchhhhhHHHHHHHHHHHhh
Confidence 2221 1122222 3599999999999999999999999999 5666999 89999999999999997 7767777654
Q ss_pred --cCCCcccEEEeCCccchHHHHHHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchH
Q 007117 403 --ENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGV 480 (617)
Q Consensus 403 --~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FGl~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv 480 (617)
.+++.||||||||+.|++.|.+||+.|+||||.++||+||+|+++||++.+ |+++|+.+.+++++|+||||+
T Consensus 148 ~~~~~~~I~w~ImtS~~T~e~T~~~f~~~~~FGl~~~qv~~f~Q~~l~c~~~~------gk~~le~k~~~a~ap~gngg~ 221 (477)
T KOG2388|consen 148 AVSDGVDIPWYIMTSAFTHEATLEYFESHKYFGLKPEQVTFFQQGKLPCLDLD------GKFILEQKNSLAAAPDGNGGL 221 (477)
T ss_pred hhccCCceEEEEecCCCccHHhHhHHhhcCCCCCChhHeeeeecccccccccC------CceeccCccchhcCCCCCcHH
Confidence 456899999999999999999999999999999999999999999999998 789999999999999999999
Q ss_pred HHHHhhCchhHHHHHcCceEEEEEeCCccccc-ccHHHHHHHHHcCCcEEEEEeeccCCcccc-----------------
Q 007117 481 FSLLSSHNIIKNLDELGVEYIQICTANPRNAI-GNSMFLGFVKSCGADIGFQISEYAKHSEER----------------- 542 (617)
Q Consensus 481 ~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~~-~DP~flG~~~~~~~d~~~kvV~k~~~~~E~----------------- 542 (617)
|+|+.++ |.+|.+||+.|+|||||||+|++ +||+|||||+.+++||++|+|+|. .|+|.
T Consensus 222 y~ai~~~--l~dm~~rgi~~~hiy~VdnvL~k~aDP~fiG~~it~~~d~~~k~V~k~-~p~E~vG~~~~~~~G~~~vvEY 298 (477)
T KOG2388|consen 222 YRAIKDQ--LEDMAARGIFYDHIYCVDNVLLKVADPVFIGFSITKEADVAAKVVPKI-NPGEVVGIVALKGQGTPLVVEY 298 (477)
T ss_pred HHHHHhh--hhHHHhhcccEEEEEEecceeeEecccceeeEEeechhhHhhhhcccc-CCCCceEEEEecCCCceeEEEe
Confidence 9999998 99999999999999999999995 999999999999999999999999 45653
Q ss_pred -------------------------ccceeeHHHHHHhhhhh-ccccccccccCCCcccccCCCcceecCCCCCeeEEEE
Q 007117 543 -------------------------FNTMLSMNVMKKLTNHI-NKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRS 596 (617)
Q Consensus 543 -------------------------~~h~fs~~fl~~~~~~~-~~L~~H~a~Kkip~~~~~~~~g~~v~P~~pN~~K~E~ 596 (617)
|||+|+++||+++++.+ ..||||+|.|||||+ |.+|++++|++|||||+|+
T Consensus 299 sEi~~~~a~~~~~d~g~l~~~agnI~nh~ft~dFLkk~~~~~~~~lp~H~a~kKip~~---~~~g~~~kP~kpnGik~E~ 375 (477)
T KOG2388|consen 299 SELDAELAKAKAPDGGRLLFNAGNICNHFFTLDFLKKVTRASVPLLPYHKAEKKIPYV---DSTGKLVKPTKPNGIKLEQ 375 (477)
T ss_pred cccCHHHHhhcccccCccccCCccHHHHHHhhHHHHHhhhcccccchhhhhhcccccc---ccCCcccCCCCCCceeEEe
Confidence 37999999999998875 469999999999999 5568999999999999999
Q ss_pred EEecccCCCCCCceEEEEec
Q 007117 597 SIYSCLNACSLDKVCVMEIT 616 (617)
Q Consensus 597 fifD~f~~~~~~~~~~~ev~ 616 (617)
||||+||+++ +|++|||.
T Consensus 376 fifdvf~~~k--~f~~meV~ 393 (477)
T KOG2388|consen 376 FIFDVFPSAK--KFGLMEVP 393 (477)
T ss_pred eeeeeccccc--ceeEEecc
Confidence 9999999998 99999995
No 4
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=100.00 E-value=8.9e-68 Score=557.20 Aligned_cols=263 Identities=23% Similarity=0.372 Sum_probs=239.9
Q ss_pred hHHHhchhhhcCCceEEEEEccCCCCC-CCCCCCc-ccccCCCCcchHHHHHH-HHhhHHHHhh--cCCCcccEEEeCCc
Q 007117 342 SLQKKGNHLVSEGKKAMVLVVHNSEEG-NECDPHS-VVSESTANKSLALLQTL-LSDDQRFVKI--ENRASMPLVLVLPA 416 (617)
Q Consensus 342 ~~~~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK~-~~i~l~s~kslf~l~~~-i~~~~~l~~~--~~~~~ip~~IMTS~ 416 (617)
+|+++|+++|++|++|+|+||||+||| |...||+ +++++++++|+|+++++ ++.++.+... +.++.||||||||+
T Consensus 2 ~~~~~G~~~i~~~~va~viLaGG~GTRLg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~ 81 (323)
T cd04193 2 EWEEAGLKAIAEGKVAVLLLAGGQGTRLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSE 81 (323)
T ss_pred hHHHHhHHHHhcCCEEEEEECCCcccccCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcCh
Confidence 689999999999999999999999999 5566999 78888899999999885 5555544421 34578999999999
Q ss_pred cchHHHHHHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHc
Q 007117 417 LEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDEL 496 (617)
Q Consensus 417 ~t~~~T~~ff~~~~~FGl~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~ 496 (617)
.||+.|++||++|+|||+++++|+||.|+++||++.+ |+++++++++++|+|+||||+|.+|++||+|++|.++
T Consensus 82 ~t~~~t~~~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~------g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~ 155 (323)
T cd04193 82 ATHEETRKFFKENNYFGLDPEQVHFFQQGMLPCVDFD------GKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKR 155 (323)
T ss_pred hHhHHHHHHHHhCCcCCCCCceEEEEecCceeeEcCC------CccccCCCCccccCCCCchHHHHHHHHCChHHHHHhC
Confidence 9999999999999999999999999999999999987 8999999999999999999999999999999999999
Q ss_pred CceEEEEEeCCcccc-cccHHHHHHHHHcCCcEEEEEeeccCCcccc---------------------------------
Q 007117 497 GVEYIQICTANPRNA-IGNSMFLGFVKSCGADIGFQISEYAKHSEER--------------------------------- 542 (617)
Q Consensus 497 Gi~yi~v~~vDN~l~-~~DP~flG~~~~~~~d~~~kvV~k~~~~~E~--------------------------------- 542 (617)
|++|+||+||||+|+ .+||.|||||+++++||++|||+|+ .|+|+
T Consensus 156 G~~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~-~~~ekvG~l~~~~g~~~vvEysel~~~~~~~~~~~g~l 234 (323)
T cd04193 156 GIKYIHVYSVDNILVKVADPVFIGFCISKGADVGAKVVRKR-YPTEKVGVVVLVDGKPQVVEYSEISDELAEKRDADGEL 234 (323)
T ss_pred CCEEEEEEecCcccccccCHHHhHHHHHcCCceEEEEEECC-CCCCceeEEEEECCeEEEEEeecCCHHHHhccCcCCcE
Confidence 999999999999999 6999999999999999999999999 56664
Q ss_pred -------ccceeeHHHHHHhhhhh-ccccccccccCCCcccccCCCcceecCCCCCeeEEEEEEecccCCCCCCceEEEE
Q 007117 543 -------FNTMLSMNVMKKLTNHI-NKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYSCLNACSLDKVCVME 614 (617)
Q Consensus 543 -------~~h~fs~~fl~~~~~~~-~~L~~H~a~Kkip~~~~~~~~g~~v~P~~pN~~K~E~fifD~f~~~~~~~~~~~e 614 (617)
++|+||++||+++++.. ..||||+|+|||||+| ..|..|+|++|||||||+||||+||+|+ +++++|
T Consensus 235 ~f~~~ni~~~~fsl~fl~~~~~~~~~~l~~h~a~Kki~~~d---~~~~~~~p~~~n~~klE~fifd~~~~~~--~~~~~e 309 (323)
T cd04193 235 QYNAGNIANHFFSLDFLEKAAEMEEPSLPYHIAKKKIPYVD---LEGGLVKPDEPNGIKLELFIFDVFPFAK--NFVCLE 309 (323)
T ss_pred ecccchHhhheeCHHHHHHHHhhccccCCceEeccccCccc---CcCcEeccCCCcEEEeHHHHHHHHHhCC--ceEEEE
Confidence 25899999999997753 3699999999999984 4456999999999999999999999998 999999
Q ss_pred ec
Q 007117 615 IT 616 (617)
Q Consensus 615 v~ 616 (617)
|+
T Consensus 310 V~ 311 (323)
T cd04193 310 VD 311 (323)
T ss_pred EC
Confidence 96
No 5
>PLN02830 UDP-sugar pyrophosphorylase
Probab=100.00 E-value=9.1e-62 Score=543.35 Aligned_cols=324 Identities=16% Similarity=0.207 Sum_probs=256.0
Q ss_pred hhHHHHHHHHHHHHcCccccccccCCC--CHHHHHHHHHHHhcCCHH-------HHHHHHHhccCCccccchhhhhhhhh
Q 007117 242 FQKRLIAAKKKLREMEQQHVFHGFRFG--EKYQTSLLANHIVGINSK-------LLQQALQNIEIPSKRWNATELMNATK 312 (617)
Q Consensus 242 ~~~~~~~l~~~L~~~gQ~HLl~~~~~l--~~~ek~~L~~ql~~iD~~-------~l~~~~~~~~~~~~~~~~~~~~~~~~ 312 (617)
+..+.++|+++|.++||+|||+||+++ +++||++|++||..+|.. ++.++.+.+..+.. ..
T Consensus 23 ~~~~~~~l~~~L~~~gQ~HL~~~w~~l~~~~~e~~~L~~qL~~ld~~y~g~l~~~~~~~~~~l~~s~~--~~-------- 92 (615)
T PLN02830 23 LSPDQRALVRRLLELGQSHLFEHWPEPGVDDDDKRRLLEQVARLDESYPGGLAAYVSNAKELLADSKE--GV-------- 92 (615)
T ss_pred CChhHHHHHHHHHHcCcHHHHhhhhccCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhhccc--CC--------
Confidence 445567899999999999999999998 899999999999999988 45555544332111 00
Q ss_pred hhhhccccc-CCCCCCCCCCCchhhhccchhHHHhchhhhcCCceEEEEEccCCCCC-CCCCCCc-ccccCCCCcchHHH
Q 007117 313 AELMISSLK-ISGEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEG-NECDPHS-VVSESTANKSLALL 389 (617)
Q Consensus 313 ~~~~~~~~~-vp~~~~~~~~~~~~~~~~~~~~~~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK~-~~i~l~s~kslf~l 389 (617)
...+.++| +|.+ .+....+ .++ .+|++.|+++| ||||||+|||||||| |+.+||+ +++++++++||||+
T Consensus 93 -~~~~~i~P~vp~~-~~~~~~~-~~~---~~~~~~Gl~~l--~kvavllLaGGlGTRLG~~~pK~~lpv~~~~gkt~lql 164 (615)
T PLN02830 93 -NPFEGWTPSVPEG-EVLEYGS-EEF---VELEEAGLREA--GNAAFVLVAGGLGERLGYSGIKVALPTETATGTCYLQL 164 (615)
T ss_pred -CchhhcccCCCcc-ccccccc-hhh---hHHHHHHHHHh--CcEEEEEecCCcccccCCCCCCcceecccCCCCcHHHH
Confidence 01234677 4665 3332222 222 47999999999 799999999999999 6778999 78888999999999
Q ss_pred HHH-HHhhHHHHhh---cCCCcccEEEeCCccchHHHHHHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccceeccc
Q 007117 390 QTL-LSDDQRFVKI---ENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMK 465 (617)
Q Consensus 390 ~~~-i~~~~~l~~~---~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FGl~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~ 465 (617)
+++ |+.+|+++.. +.++.||||||||+.||++|++||++|+|||++++||+||+|+++||++.+ + |+++++
T Consensus 165 ~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~-~----g~~~l~ 239 (615)
T PLN02830 165 YIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKLLERNDYFGMDPDQVTLLKQEKVACLMDN-D----ARLALD 239 (615)
T ss_pred HHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHHHHHHCCccCCCccceEEEEcCcceeEecC-C----Cccccc
Confidence 997 7777777642 346889999999999999999999999999999999999999999999876 3 799999
Q ss_pred C--CCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCcccc-cccHHHHHHHHHcCCcEEEEEeeccCCcccc
Q 007117 466 S--PWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNA-IGNSMFLGFVKSCGADIGFQISEYAKHSEER 542 (617)
Q Consensus 466 ~--~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~-~~DP~flG~~~~~~~d~~~kvV~k~~~~~E~ 542 (617)
+ +++++|+|+||||+|+||+++|+|++|.++|++|+|||||||+|+ .+||.|||||+.++++|++|||+|. |.|+
T Consensus 240 ~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN~L~~~Adp~flG~~~~~~~d~~~kvv~K~--~~E~ 317 (615)
T PLN02830 240 PNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTNGLVFKAIPAALGVSATKGFDMNSLAVPRK--AKEA 317 (615)
T ss_pred CCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEeccchhhhcccHHHhHHHHhcCCceEEEEEECC--CCcc
Confidence 8 889999999999999999999999999999999999999999999 5999999999999999999999996 6899
Q ss_pred ccceeeHHHHH-H-h-hh-hhccccccccccCCCcccccCCCcceecCCCCC
Q 007117 543 FNTMLSMNVMK-K-L-TN-HINKLEFYATPKLNSHVEKVDKEFIDVIPAAPN 590 (617)
Q Consensus 543 ~~h~fs~~fl~-~-~-~~-~~~~L~~H~a~Kkip~~~~~~~~g~~v~P~~pN 590 (617)
+|.++.+.-.+ + + +. .|++++-..+..+.|--+..+..|-...|.+-|
T Consensus 318 vGvi~~~~~~dG~~l~~vVEYse~~~ll~~a~~p~g~l~~~~~~s~FPgNtN 369 (615)
T PLN02830 318 IGAIAKLTHKDGREMVINVEYNQLDPLLRATGHPDGDVNDETGYSPFPGNIN 369 (615)
T ss_pred cceEEEEecCCCCeeeEEEeecccCHHHHhccCCCcccccccccccCCCCce
Confidence 98777641111 1 1 11 234555555555554322223333334444444
No 6
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=100.00 E-value=4e-61 Score=501.00 Aligned_cols=243 Identities=16% Similarity=0.144 Sum_probs=216.0
Q ss_pred eEEEEEccCCCCC-CCCCCCc-ccccCCCCcchHHHHHH-HHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCC
Q 007117 356 KAMVLVVHNSEEG-NECDPHS-VVSESTANKSLALLQTL-LSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHF 432 (617)
Q Consensus 356 vavvllAGG~GtR-g~~~pK~-~~i~l~s~kslf~l~~~-i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~F 432 (617)
+|||+|||||||| |+..||| +++++++++||||++++ |++++++++.+.++.||||||||+.||++|++||++|+||
T Consensus 1 ~a~vllaGG~GTRLG~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n~yF 80 (315)
T cd06424 1 AVFVLVAGGLGERLGYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEENNYF 80 (315)
T ss_pred CEEEEecCCCccccCCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHCCcc
Confidence 5999999999999 6667999 88999999999999997 7777777654567899999999999999999999999999
Q ss_pred CCCCCcEEEEecCCcccccCCCCcccccee--cccCCCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCccc
Q 007117 433 AFDSKKVWFLEEEKLPIVSRSPTEQNKFKI--LMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRN 510 (617)
Q Consensus 433 Gl~~~~v~~f~Q~~lP~~~~~~~g~~~gki--ll~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l 510 (617)
|++++||+||+|+++||++.. + |++ +++++++++|+|+||||+|+||+++|+|++|.++|++|++|+||||+|
T Consensus 81 Gl~~~~V~fF~Q~~~P~l~~~-~----g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L 155 (315)
T cd06424 81 GLEKDQVHILKQEKVFCLIDN-D----AHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNAL 155 (315)
T ss_pred CCCcccEEEEecCceEEEecC-C----CCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhh
Confidence 999999999999999999743 2 688 689999999999999999999999999999999999999999999999
Q ss_pred c-cccHHHHHHHHHcCCcEEEEEeeccCCccccc----------------------------------------------
Q 007117 511 A-IGNSMFLGFVKSCGADIGFQISEYAKHSEERF---------------------------------------------- 543 (617)
Q Consensus 511 ~-~~DP~flG~~~~~~~d~~~kvV~k~~~~~E~~---------------------------------------------- 543 (617)
+ ++||+|||||+.+++||++|||+|. |.|++
T Consensus 156 ~~~adP~fiG~~~~~~~d~~~k~v~~~--~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~~~~~s~f 233 (315)
T cd06424 156 AFKAIPAVLGVSATKSLDMNSLTVPRK--PKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDDKTGFSPF 233 (315)
T ss_pred hhccChhhEEEEecCCCceEeEEEeCC--CCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCcccccccccC
Confidence 9 5999999999999999999999866 45531
Q ss_pred -----cceeeHHHHHHhhhhhccccccccccCCCcccccCCCcceecCCCCCeeEEEEEEecc---cCCCCCCceEEEEe
Q 007117 544 -----NTMLSMNVMKKLTNHINKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYSC---LNACSLDKVCVMEI 615 (617)
Q Consensus 544 -----~h~fs~~fl~~~~~~~~~L~~H~a~Kkip~~~~~~~~g~~v~P~~pN~~K~E~fifD~---f~~~~~~~~~~~ev 615 (617)
+|+|+++|+++..+. .+++|..++++||.| +..|..++| .|||.|+||+ |+.+. +|+++||
T Consensus 234 ~gNi~~~~f~l~~~~~~l~~--~~~~~~~~~n~ky~d--~~~~~~~~p-----~rlE~~m~D~~~~f~~~~--~~~~~~~ 302 (315)
T cd06424 234 PGNINQLVFSLGPYMDELEK--TKGAIPEFINPKYKD--ATKTAFKSP-----TRLECMMQDIPLLFEEDY--RVGFTVL 302 (315)
T ss_pred CCeeeeEEEeHHHHHHHHhh--ccccCeeeecCCccc--CCCCeecCc-----hHHHHHHHHHHHhhcccc--eeEEEEE
Confidence 499999999998764 467777777999984 234677888 4999999999 77787 9999998
Q ss_pred c
Q 007117 616 T 616 (617)
Q Consensus 616 ~ 616 (617)
+
T Consensus 303 ~ 303 (315)
T cd06424 303 D 303 (315)
T ss_pred c
Confidence 6
No 7
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=100.00 E-value=2.8e-60 Score=493.10 Aligned_cols=233 Identities=15% Similarity=0.201 Sum_probs=207.8
Q ss_pred CceEEEEEccCCCCC-CCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCC
Q 007117 354 GKKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHF 432 (617)
Q Consensus 354 gkvavvllAGG~GtR-g~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~F 432 (617)
+|||||+|||||||| |+..|||+ +++++++||||++++ +++++.+ ..++.||||||||+.||++|++||++|++
T Consensus 2 ~kvavl~LaGG~GTRLG~~~pKg~-~~v~~~~s~l~l~~~--~i~~l~~-~~~~~iPl~iMtS~~T~~~T~~~l~~~~~- 76 (300)
T cd00897 2 NKLVVLKLNGGLGTSMGCTGPKSL-IEVRDGKTFLDLTVQ--QIEHLNK-TYGVDVPLVLMNSFNTDEDTKKILKKYAG- 76 (300)
T ss_pred CcEEEEEecCCcccccCCCCCcee-eecCCCCcHHHHHHH--HHHHHHH-HcCCCceEEEECCCcchHHHHHHHHHcCC-
Confidence 589999999999999 66679994 455799999999984 3334433 35688999999999999999999999876
Q ss_pred CCCCCcEEEEecCCcccccCCCCccccceeccc---CCCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCcc
Q 007117 433 AFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMK---SPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPR 509 (617)
Q Consensus 433 Gl~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~---~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~ 509 (617)
+++||++|+|+++||++.+ |++.++ ++++++|+|+||||+|.||++||+|++|.++|++|++|+||||+
T Consensus 77 --~~~~v~~F~Q~~~P~~~~~------~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL 148 (300)
T cd00897 77 --VNVDIHTFNQSRYPRISKE------TLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNL 148 (300)
T ss_pred --CccCeEEEecCCcccCccc------cCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccc
Confidence 7889999999999999998 688887 88999999999999999999999999999999999999999996
Q ss_pred cccccHHHHHHHHHcCCcEEEEEeeccCCcccc--------------------------------------ccceeeHHH
Q 007117 510 NAIGNSMFLGFVKSCGADIGFQISEYAKHSEER--------------------------------------FNTMLSMNV 551 (617)
Q Consensus 510 l~~~DP~flG~~~~~~~d~~~kvV~k~~~~~E~--------------------------------------~~h~fs~~f 551 (617)
.+.+||.|||||+.++++|++|||+|+ .++|+ +||+|+++|
T Consensus 149 ~a~~Dp~~lg~~~~~~~~~~~evv~Kt-~~dek~G~l~~~~g~~~vvEyse~p~e~~~~~~~~~~~~~~nt~n~~~~l~~ 227 (300)
T cd00897 149 GATVDLRILNHMVDNKAEYIMEVTDKT-RADVKGGTLIQYEGKLRLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWVNLKA 227 (300)
T ss_pred cccCCHHHHHHHHhcCCceEEEEeecC-CCCCcccEEEEECCEEEEEEeccCCHHHHHhhcCcccceEEEEeEEEEEHHH
Confidence 557999999999999999999999999 57764 268999999
Q ss_pred HHHhhhhh-ccccccccccCCCcccccCCCcceecCCCCCeeEEEEEEecccCCCCCCceEEEEec
Q 007117 552 MKKLTNHI-NKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYSCLNACSLDKVCVMEIT 616 (617)
Q Consensus 552 l~~~~~~~-~~L~~H~a~Kkip~~~~~~~~g~~v~P~~pN~~K~E~fifD~f~~~~~~~~~~~ev~ 616 (617)
|+++++.. ..||||+|.|+|| |+ ||+||||+||||+||+++ ++.++||+
T Consensus 228 L~~~~~~~~~~lp~h~~~K~v~-------------p~-~~~~qlE~~i~da~~~~~--~~~~~eV~ 277 (300)
T cd00897 228 VKRVVEENALDLEIIVNPKTVD-------------GG-LNVIQLETAVGAAIKNFD--NALGVNVP 277 (300)
T ss_pred HHHHHHhccCCCCeeecccccC-------------CC-CCEEEeHhHhhhHHHhCC--CcEEEEEC
Confidence 99997653 3699999999973 33 999999999999999998 99999996
No 8
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.8e-56 Score=475.42 Aligned_cols=332 Identities=17% Similarity=0.204 Sum_probs=267.3
Q ss_pred HHHHHHHHHHcCccccccccCCCCHHHHHHHHHHHhcCC--HHHHHHHHHhccCCccccchhhhhhhhhhhhhcccccCC
Q 007117 246 LIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGIN--SKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKIS 323 (617)
Q Consensus 246 ~~~l~~~L~~~gQ~HLl~~~~~l~~~ek~~L~~ql~~iD--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp 323 (617)
+......+.+..|.|++..|..+++.+..+...++..+| +.++++++.. .+.... ....++.|..
T Consensus 15 f~~~~~~l~~~~~~h~l~~l~~~s~~~~~~~~~~~~~~d~~f~l~~~~ll~--~s~~s~-----------~~~~ki~~~~ 81 (472)
T COG4284 15 FNSDAVSLAASQQEHLLDKLKQSSEKQALKSFEKLLLLDIFFFLFSRYLLN--TSKAST-----------QEWDKIRPPN 81 (472)
T ss_pred hhcchhhhhHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHHHHHHHHhh--cCcccc-----------eeecccCCCC
Confidence 456777899999999999999999966667777755555 4566666543 111100 1112233332
Q ss_pred CCCCCCCCCchhhhccchhHHHhchhhhcCCceEEEEEccCCCCC-CCCCCCcccccCCCCcchHHHHHHHHhhHHHHhh
Q 007117 324 GEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKI 402 (617)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~ 402 (617)
.+ .+. ... ... .+++ |+..|..||+|||+|||||||| |+..|||+ +++..++|||+|++ ++++.+.+
T Consensus 82 ~d-~~~--~~~-~~~--~~~~--~l~~~~~~klAvl~LaGGqGtrlG~~gPKgl-~~V~~gks~~dl~~--~qIk~ln~- 149 (472)
T COG4284 82 PD-DVV--DYE-KKI--LEGW--GLLKIKLGKLAVLKLAGGQGTRLGCDGPKGL-FEVKDGKSLFDLQA--EQIKYLNR- 149 (472)
T ss_pred hh-hhc--cch-hhc--cchh--hhhhhhcCceEEEEecCCcccccccCCCcee-EEecCCCcHHHHHH--HHHHHHHH-
Confidence 22 222 111 111 1222 8888889999999999999999 77779994 45569999999998 44455555
Q ss_pred cCCCcccEEEeCCccchHHHHHHHHHCCCCCCCCCcEEEEecCCcc-cccCCCCccccceecccCCCC-cccccCCCchH
Q 007117 403 ENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLP-IVSRSPTEQNKFKILMKSPWE-TLQAPVGSGGV 480 (617)
Q Consensus 403 ~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FGl~~~~v~~f~Q~~lP-~~~~~~~g~~~gkill~~~~~-i~~~P~GnGgv 480 (617)
..+++|||||||| .|++.|..||+.|+|||+++++|+||.|+.+| |++.+ |+.++.+.++ ++|.|+||||+
T Consensus 150 ~~~~~vP~~iMtS-~nt~~t~s~f~~~~Y~~~~k~~I~fF~Q~~~P~~~~~s------g~~~~~~~~~~~~~~P~GnG~l 222 (472)
T COG4284 150 QYNVDVPLYIMTS-LNTEETDSYFKSNDYFGLDKEDIFFFVQSLFPRLLSDS------GLPFLESDDSNLAWYPPGNGDL 222 (472)
T ss_pred HhCCCCCEEEEec-CCcHHHHHHHhhhhhcCCCHHHeEEEecCCcceeeccc------CccccccCCcccccCCCCCccH
Confidence 4569999999999 99999999999999999999999999999999 45554 7888887777 99999999999
Q ss_pred HHHHhhCchhHHHHHcCceEEEEEeCCcccc-cccHHHHHHHHHcCCcEEEEEeeccCCccccc----------------
Q 007117 481 FSLLSSHNIIKNLDELGVEYIQICTANPRNA-IGNSMFLGFVKSCGADIGFQISEYAKHSEERF---------------- 543 (617)
Q Consensus 481 ~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~-~~DP~flG~~~~~~~d~~~kvV~k~~~~~E~~---------------- 543 (617)
|.||..||++++|.++|++|++|+|||| |+ .+||.|||+++.+++++++|++.|+ .++|++
T Consensus 223 f~aL~~SG~le~l~~~G~e~lfV~nIDN-L~~~vD~~~lg~~~~~~~e~~~e~t~Kt-~a~ekvG~Lv~~~g~~rllEys 300 (472)
T COG4284 223 FKALKSSGILEKLIAQGIEYLFVSNIDN-LGATVDLKFLGFMAETNYEYLMETTDKT-KADEKVGILVTYDGKLRLLEYS 300 (472)
T ss_pred HHHHHhcchHHHHHhcCceEEEEecccc-cccccCHHHHHHHHhcCcceeEEEeecc-cccccceEEEEeCCceEEEEEe
Confidence 9999999999999999999999999999 66 7999999999999999999999999 577642
Q ss_pred -------------------------cceeeHHHHHHhhhhhccccccccccCCCcccccCCCcceecCCCCCeeEEEE-E
Q 007117 544 -------------------------NTMLSMNVMKKLTNHINKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRS-S 597 (617)
Q Consensus 544 -------------------------~h~fs~~fl~~~~~~~~~L~~H~a~Kkip~~~~~~~~g~~v~P~~pN~~K~E~-f 597 (617)
.|+++++||.+... ..||+|.|+||||+.+ .-.+.-+|-.||++|||. |
T Consensus 301 ev~~~~~~~~~s~~~~~~~n~Nni~l~~~~~~~l~~~~~--l~Lpi~~a~Kki~~~~---~~~~~~t~i~~~i~kfe~~F 375 (472)
T COG4284 301 EVPNEHREEFTSDGKLKYFNTNNIWLHLFSVKFLKEAAY--LNLPIHKAIKKIPQLD---NIIQLTTAIGKNISKFENEF 375 (472)
T ss_pred cCChhHhhhhccccceeeeccccceeehhHHHHHHhhhc--cCCcchhhhcccCccc---cceeeccccccchhhccccc
Confidence 49999999988765 3799999999999984 334688999999999997 9
Q ss_pred E-ecccCCCCCCceEEEEec
Q 007117 598 I-YSCLNACSLDKVCVMEIT 616 (617)
Q Consensus 598 i-fD~f~~~~~~~~~~~ev~ 616 (617)
| ||+|.+.+.++++++.|+
T Consensus 376 I~fDlF~~~s~~~~~~~~vp 395 (472)
T COG4284 376 IPFDLFLYKSDENGGLLLVP 395 (472)
T ss_pred cceeeeEEEecCCCceEecc
Confidence 9 999999955699999875
No 9
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=100.00 E-value=1.2e-55 Score=477.98 Aligned_cols=244 Identities=18% Similarity=0.295 Sum_probs=203.3
Q ss_pred HhchhhhcCCceEEEEEccCCCCC-CCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHH
Q 007117 345 KKGNHLVSEGKKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLE 423 (617)
Q Consensus 345 ~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~ 423 (617)
..|+.+++.||||||+|||||||| |+.+|||+ +++.+++||+++++ ++++++.+ ..++.||||||||+.||++|+
T Consensus 46 ~~~~~~~~~~kvavl~LaGGlGTrlG~~~pK~~-~~v~~~~t~ldl~~--~qi~~l~~-~~~~~iPl~iMtS~~T~~~T~ 121 (420)
T PF01704_consen 46 DEGLEAIALGKVAVLKLAGGLGTRLGCSGPKGL-IPVREGKTFLDLIV--EQIEALNK-KYGVDIPLYIMTSFNTHEDTR 121 (420)
T ss_dssp HHHHHHHHTTCEEEEEEEESBSGCCTESSBGGG-SEEETTEEHHHHHH--HHHHHHHH-HHTTT-EEEEEEETTTHHHHH
T ss_pred ccchhHHhhCCEEEEEEcCcccCccCCCCCCcc-eecCCcccHHHHHH--HHHHHHhc-cccccceEEEecCcccHHHHH
Confidence 789999999999999999999999 67779994 56689999999976 44455544 346899999999999999999
Q ss_pred HHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccceecccCCCCc-----ccccCCCchHHHHHhhCchhHHHHHcCc
Q 007117 424 KLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWET-----LQAPVGSGGVFSLLSSHNIIKNLDELGV 498 (617)
Q Consensus 424 ~ff~~~~~FGl~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i-----~~~P~GnGgv~~aL~~~g~l~~l~~~Gi 498 (617)
+||++ |||++.+ |++|+|+++||++.+ |++.++++.+. .|+|+||||+|.||++||+|++|.++|+
T Consensus 122 ~~l~k--yfg~~~~-v~~F~Q~~~P~i~~d------~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~ 192 (420)
T PF01704_consen 122 KFLEK--YFGLDVD-VFFFKQSKLPAIDAD------GKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGI 192 (420)
T ss_dssp HHHHH--GCGSSCC-EEEEEE-EEEEEETT------TTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT-
T ss_pred HHHHH--hcCCCcc-eEEEeecCcceEeCC------CccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCC
Confidence 99999 9999888 999999999999998 68888876532 4789999999999999999999999999
Q ss_pred eEEEEEeCCcccc-cccHHHHHHHHHcCCcEEEEEeeccCCccccc----------------------------------
Q 007117 499 EYIQICTANPRNA-IGNSMFLGFVKSCGADIGFQISEYAKHSEERF---------------------------------- 543 (617)
Q Consensus 499 ~yi~v~~vDN~l~-~~DP~flG~~~~~~~d~~~kvV~k~~~~~E~~---------------------------------- 543 (617)
+|+||+|||| |+ .+||.|||||+.++++|++|||+|+ .|+|++
T Consensus 193 eyifv~nvDN-L~a~~Dp~~lG~~~~~~~~~~~evv~Kt-~~dek~Gvl~~~~G~~~vvEysqip~~~~~~~~~~~~~~~ 270 (420)
T PF01704_consen 193 EYIFVSNVDN-LGAVVDPVFLGYMIEKNADFGMEVVPKT-SPDEKGGVLCRYDGKLQVVEYSQIPKEHMAEFKDIKGFLL 270 (420)
T ss_dssp -EEEEEETTB-TT-TT-HHHHHHHHHTT-SEEEEEEE-C-STTTSSEEEEEETTEEEEEEGGGS-HHGHHHHTSTTTSBE
T ss_pred eEEEEEecCC-cccccCHHHHHHHHhccchhheeeeecC-CCCCceeEEEEeCCccEEEEeccCCHHHHHhhhccccceE
Confidence 9999999999 66 7999999999999999999999999 577752
Q ss_pred ----cceeeHHHHHHhhhh-hccccccccccCCCcccccCCCcceecCCCCCeeEEEEEEecccCCCCCCceEEEEec
Q 007117 544 ----NTMLSMNVMKKLTNH-INKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYSCLNACSLDKVCVMEIT 616 (617)
Q Consensus 544 ----~h~fs~~fl~~~~~~-~~~L~~H~a~Kkip~~~~~~~~g~~v~P~~pN~~K~E~fifD~f~~~~~~~~~~~ev~ 616 (617)
|++|+++||+++.+. ..+||||+|+|+|||+| ..+|++|||+|||+.+++.+ +..++||+
T Consensus 271 FntnNi~~~l~~l~~~~~~~~~~Lp~h~a~Kki~~~d-----------~~~~~~q~Et~i~~~i~~f~--~~~~v~V~ 335 (420)
T PF01704_consen 271 FNTNNIWFSLDFLKRLLERDELQLPIHVAKKKIPYVD-----------NGIKVIQFETAIGFAIFQFD--NSFAVEVP 335 (420)
T ss_dssp EEEEEEEEEHHHHHHHHHTTTCCS-EEEEEEESSEEC-----------TEEEEEEEECGGGGGGGGCT--SEEEEEE-
T ss_pred EEeceeeEEHHHHHHHHHhccccCccEEcchhccccc-----------CCccEEeehhhhhchHhhcc--CcEEEEEc
Confidence 578999999999765 34799999999999984 34689999999866655554 57777986
No 10
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=100.00 E-value=1.8e-53 Score=462.68 Aligned_cols=232 Identities=15% Similarity=0.159 Sum_probs=205.2
Q ss_pred hhcCCceEEEEEccCCCCC-CCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 007117 350 LVSEGKKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 428 (617)
Q Consensus 350 ~i~~gkvavvllAGG~GtR-g~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~ 428 (617)
+| +|+|||+|||||||| |+..|||+ +++++++||||+++ +|++++.+ ..++.||||||||+.||++|++||++
T Consensus 76 ~L--~k~avlkLnGGlGTrmG~~~PKs~-i~v~~~~sfldl~~--~qi~~l~~-~~g~~vPl~iMtS~~T~~~T~~~l~k 149 (469)
T PLN02474 76 LL--DKLVVLKLNGGLGTTMGCTGPKSV-IEVRNGLTFLDLIV--IQIENLNK-KYGCNVPLLLMNSFNTHDDTQKIVEK 149 (469)
T ss_pred HH--hcEEEEEecCCcccccCCCCCcee-EEcCCCCcHHHHHH--HHHHHHHH-HcCCCceEEEECCCchhHHHHHHHHH
Confidence 56 699999999999999 77779994 56789999999987 55566655 45789999999999999999999999
Q ss_pred CCCCCCCCCcEEEEecCCcccccCCCCccccceecccCCC---CcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEe
Q 007117 429 NDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPW---ETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICT 505 (617)
Q Consensus 429 ~~~FGl~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~---~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~ 505 (617)
|+||+ .+|++|.|+++||++.+ |++.++.++ +.+|+|+||||+|.+|++||+|++|.++|++|++|+|
T Consensus 150 ~~~~~---~~i~~F~Q~~~P~l~~~------~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~n 220 (469)
T PLN02474 150 YTNSN---IEIHTFNQSQYPRVVAD------DFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIAN 220 (469)
T ss_pred cCCCc---cceEEEecCceeeEecC------CCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEe
Confidence 99985 58999999999999998 688888776 4559999999999999999999999999999999999
Q ss_pred CCcccccccHHHHHHHHHcCCcEEEEEeeccCCcccc--------------------------------------cccee
Q 007117 506 ANPRNAIGNSMFLGFVKSCGADIGFQISEYAKHSEER--------------------------------------FNTML 547 (617)
Q Consensus 506 vDN~l~~~DP~flG~~~~~~~d~~~kvV~k~~~~~E~--------------------------------------~~h~f 547 (617)
|||+.+.+||.|||||+.+++++++||++|+ .++|+ +||+|
T Consensus 221 vDNLga~vDp~~lg~~~~~~~e~~~ev~~Kt-~~d~kgG~l~~~dgk~~lvEysqvp~e~~~~f~~~~kf~~fNtnn~w~ 299 (469)
T PLN02474 221 SDNLGAIVDLKILNHLIQNKNEYCMEVTPKT-LADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWV 299 (469)
T ss_pred cCccccccCHHHHHHHHhcCCceEEEEeecC-CCCCCccEEEEECCEEEEEEEecCCHHHHHhhcccccceeeeeeeEEE
Confidence 9997668999999999999999999999999 56763 26999
Q ss_pred eHHHHHHhhhhhccccccccccCCCcccccCCCcceecCCCCCeeEEEE---EEecccCCCCCCceEEEEec
Q 007117 548 SMNVMKKLTNHINKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRS---SIYSCLNACSLDKVCVMEIT 616 (617)
Q Consensus 548 s~~fl~~~~~~~~~L~~H~a~Kkip~~~~~~~~g~~v~P~~pN~~K~E~---fifD~f~~~~~~~~~~~ev~ 616 (617)
+++||+++.+. ..||+|+. ++|.++||+|+|+ ||||+|++.+ ++.++||+
T Consensus 300 ~L~~l~~~~~~-~~l~~~~I----------------~n~k~~~g~kv~q~Et~ig~ai~~f~--~~~~v~Vp 352 (469)
T PLN02474 300 NLKAIKRLVEA-DALKMEII----------------PNPKEVDGVKVLQLETAAGAAIRFFD--NAIGINVP 352 (469)
T ss_pred EHHHHHHHhhc-CCCCceee----------------cCCCCCCCeeEEEeHHHHHHHHHhCC--CceEEEEc
Confidence 99999998763 45999962 4577778888888 6999999998 99999996
No 11
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=100.00 E-value=4e-44 Score=368.94 Aligned_cols=246 Identities=13% Similarity=0.080 Sum_probs=198.2
Q ss_pred eEEEEEccCCCCC-CCCCCCc-ccccCCCCcchHHHHHH-HHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCC
Q 007117 356 KAMVLVVHNSEEG-NECDPHS-VVSESTANKSLALLQTL-LSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHF 432 (617)
Q Consensus 356 vavvllAGG~GtR-g~~~pK~-~~i~l~s~kslf~l~~~-i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~F 432 (617)
||+|+||||+||| |+..||+ +++.+++++|+|+++++ +++++.+.+ .++.|||+||||+.||+.|++||++|+
T Consensus 1 va~viLaGG~GtRLg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~--~~~~Ip~~imts~~t~~~t~~~l~~~~-- 76 (266)
T cd04180 1 VAVVLLAGGLGTRLGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDL--YSCKIPEQLMNSKYTHEKTQCYFEKIN-- 76 (266)
T ss_pred CEEEEECCCCccccCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhh--cCCCCCEEEEcCchhHHHHHHHHHHcC--
Confidence 6999999999999 5556999 78888999999999885 444444332 357899999999999999999999998
Q ss_pred CCCCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCccccc
Q 007117 433 AFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAI 512 (617)
Q Consensus 433 Gl~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~~ 512 (617)
+++++|++|+|+++||++.+ |.++++++++++|+|+||||+|.+|..+|+|++|+++|++|++|+|+||+|++
T Consensus 77 -~~~~~v~~f~Q~~~P~~~~~------~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~ 149 (266)
T cd04180 77 -QKNSYVITFMQGKLPLKNDD------DARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVK 149 (266)
T ss_pred -CCCCceEEEEeCCceEEeCC------CCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCcc
Confidence 66789999999999999998 67788999999999999999999999999999999999999999999999996
Q ss_pred -ccHHHHHHHHHcCCcEEEEEeeccCCccccccceeeHHHHHHhhh-hhccccccccccCCCcccccCCCcceecCCCCC
Q 007117 513 -GNSMFLGFVKSCGADIGFQISEYAKHSEERFNTMLSMNVMKKLTN-HINKLEFYATPKLNSHVEKVDKEFIDVIPAAPN 590 (617)
Q Consensus 513 -~DP~flG~~~~~~~d~~~kvV~k~~~~~E~~~h~fs~~fl~~~~~-~~~~L~~H~a~Kkip~~~~~~~~g~~v~P~~pN 590 (617)
+||.|+|+++.+++++++|||+|+ .++|++++++..+ -.++.. .|.++|--.+.++.+.-+..+..+....|...|
T Consensus 150 v~DP~~lG~~~~~~~~~~~kvv~K~-~~d~k~G~~~~~~-~g~~~~vEyse~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 227 (266)
T cd04180 150 VADPLFIGIAIQNRKAINQKVVPKT-RNEESGGYRIANI-NGRVQLLEYDQIKKLLKQKMVNNQIPKDIDDAPFFLFNTN 227 (266)
T ss_pred ccCHHHHHHHHHcCCCEEEEEEECC-CCCCeEEEEEEec-CCCEEEEEeccCCHHHHhccccccCcCCCCceeeccceEE
Confidence 799999999999999999999999 7899999988654 012222 245676555555433211112222345566666
Q ss_pred eeEEEE-EEe----cccCCCCCCceEEEEec
Q 007117 591 SYELRS-SIY----SCLNACSLDKVCVMEIT 616 (617)
Q Consensus 591 ~~K~E~-fif----D~f~~~~~~~~~~~ev~ 616 (617)
.+=|-. |+= |+||+++ ++.++||+
T Consensus 228 ~~~~~l~~l~~~~~d~~~~~~--~~~~~~v~ 256 (266)
T cd04180 228 NLINFLVEFKDRVDDIIEFTD--DIVGVMVH 256 (266)
T ss_pred EEEEEHHHHHHHHHHHHhccC--ceEEEEeC
Confidence 543321 111 8999998 99999996
No 12
>PRK00122 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=9.8e-42 Score=329.97 Aligned_cols=172 Identities=40% Similarity=0.652 Sum_probs=153.2
Q ss_pred CCCCCCeEEEEEEeccceeeeeEEEEeecCCccccccCCCceEEEEeecCcceeEEEEEEEeeeeCCCceEEEEecCCCC
Q 007117 20 SASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDT 99 (617)
Q Consensus 20 ~~~~~~~v~IG~I~~~hGlkGevkv~~~td~p~~~f~~~~~~~l~~~~~g~~~~~~~~v~~~r~~~~~~~~ivkfegid~ 99 (617)
|..+++++.||+|++||||||||||+++||+|+.+|. .+..|+ .. + ...+++++++.|.++ +.++++|+||+|
T Consensus 1 m~~~~~~v~iG~i~~~hGlkGevkv~~~td~p~~~~~-~~~~~~-~~--~-~~~~~~~v~~~~~~~--~~~lvkf~gi~~ 73 (172)
T PRK00122 1 MSKPEDLLVVGKIVSAHGIKGEVKVKSFTDFPERIFD-YGPWLL-GK--G-GEWQEVEIESGRFHK--GFLIVKFEGVDD 73 (172)
T ss_pred CCCccceEEEEEEECCCcccEEEEEEEecCCHHHHcC-cCcEEE-cc--C-CceEEEEEEEEEEEC--CEEEEEECCCCC
Confidence 4567899999999999999999999999999986554 556665 22 1 134678999999885 469999999999
Q ss_pred HHHHhcccCCeEEEeCCCCCCCCCCcccHhhccCcEEEEccCCeEeEEEEEeccCCCceEEEEEeccccccccCcccccc
Q 007117 100 VEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASS 179 (617)
Q Consensus 100 re~Ae~L~G~~l~v~~~~lp~L~e~EfY~~DLIG~~V~d~~~g~~lG~V~dV~~~ga~dllvV~~~~~~~~~~~~~~~~~ 179 (617)
||+|++|+|+.||++++++|+|++|||||+|||||+|+| ++|..+|+|++|+++||||+|+|+.
T Consensus 74 ~~~Ae~l~g~~l~i~~~~lp~l~~~e~y~~dLiG~~V~d-~~g~~lG~V~~v~~~~a~dll~I~~--------------- 137 (172)
T PRK00122 74 RNAAEALKGCELFVPRSQLPELEEDEYYWHDLIGLEVVD-EDGEELGKVTDILETGANDVLVVLK--------------- 137 (172)
T ss_pred HHHHHHhCCCEEEEEHHHCCCCCCCCEEHHHhCCcEEEe-CCCcEEEEEEEEccCCCceEEEEEC---------------
Confidence 999999999999999999999999999999999999997 5688899999999999999999962
Q ss_pred cCCCCCCcEEEEecccCccceeecCCCEEEEeCCCCccc
Q 007117 180 SASDASGRLVWIPFVEEIVPIVDMNGREMQITPPKGLLE 218 (617)
Q Consensus 180 ~~~~~~gke~LIPfv~~~V~~IDle~~~I~V~~peGLLe 218 (617)
++++++||||+++||++||+++++|+|++|+||||
T Consensus 138 ----~~~~e~liP~~~~~V~~iD~~~~~I~v~~p~gLld 172 (172)
T PRK00122 138 ----DKKEERLIPFVEEVVKEVDLEAKRITVDWPEGLLD 172 (172)
T ss_pred ----CCCCEEEEecChhhCCEEECCCCEEEEeCCCcccC
Confidence 14689999999999999999999999999999986
No 13
>COG0806 RimM RimM protein, required for 16S rRNA processing [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-41 Score=327.37 Aligned_cols=174 Identities=37% Similarity=0.651 Sum_probs=154.3
Q ss_pred CCCCCCeEEEEEEeccceeeeeEEEEeecCCccccccCCCceEEEEeecCcceeEEEEEEEeeeeCCCceEEEEecCCCC
Q 007117 20 SASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDT 99 (617)
Q Consensus 20 ~~~~~~~v~IG~I~~~hGlkGevkv~~~td~p~~~f~~~~~~~l~~~~~g~~~~~~~~v~~~r~~~~~~~~ivkfegid~ 99 (617)
|.+..+++.||+|+++|||||||||+|+||+|+.+|++ +..++..+ + ..+..+++.++|.|+ +.++++|+||+|
T Consensus 1 m~~~~~~~~vGkI~~t~Gi~GevrV~s~Td~~~~~~~~-~~~~~~~~--~-~~~~~~~v~~~r~~~--~~~i~kf~gi~d 74 (174)
T COG0806 1 MTKPENLLLVGKIVSTHGIRGEVRVKSFTDFPESLFDY-GPWLLLKP--G-GEWQELTVESVRKHK--NLLILKFKGIDD 74 (174)
T ss_pred CCCccceEEEEEEEecccccEEEEEEECCCCHHHhcCc-CcEEEecC--C-CceEEEEEEEeeecC--CEEEEEeCCCCC
Confidence 55667999999999999999999999999999988864 45454432 2 234678899998875 589999999999
Q ss_pred HHHHhcccCCeEEEeCCCCCCCCCCcccHhhccCcEEEEccCCeEeEEEEEeccCCCceEEEEEeccccccccCcccccc
Q 007117 100 VEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASS 179 (617)
Q Consensus 100 re~Ae~L~G~~l~v~~~~lp~L~e~EfY~~DLIG~~V~d~~~g~~lG~V~dV~~~ga~dllvV~~~~~~~~~~~~~~~~~ 179 (617)
|++|++|+|++|+++++++|+++||||||+|||||+|++ .+|+.+|+|++|+++||||+|+|+..
T Consensus 75 r~~ae~l~G~~i~v~~~~~p~l~EdEfY~~DLiG~~V~~-~~g~~lG~V~~i~~~Ga~Dvl~V~~~-------------- 139 (174)
T COG0806 75 RNAAEALKGYEIFVDRSELPELEEDEFYYHDLIGLEVVT-EDGELLGKVTEILETGANDVLVVKAK-------------- 139 (174)
T ss_pred HHHHHHhcCcEEEEEHHHCCCCCCCcEEeEeecCcEEEc-CCCcEEEEEEEEeeCCCccEEEEEec--------------
Confidence 999999999999999999999999999999999999996 56899999999999999999999841
Q ss_pred cCCCCCCcEEEEecccCccceeecCCCEEEEeCCCCccc
Q 007117 180 SASDASGRLVWIPFVEEIVPIVDMNGREMQITPPKGLLE 218 (617)
Q Consensus 180 ~~~~~~gke~LIPfv~~~V~~IDle~~~I~V~~peGLLe 218 (617)
..++++||||++++|++||+++++|.|++++||+|
T Consensus 140 ----~~~k~~LIPf~~~~V~~Vd~~~k~I~v~~~~~ll~ 174 (174)
T COG0806 140 ----GGKKERLIPFVDAVVKEVDLEAKKIEVDPDEGLLD 174 (174)
T ss_pred ----CCCcEEEecchHheeeEEecCCCEEEEeccchhcC
Confidence 13489999999999999999999999999999985
No 14
>PRK14590 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=9.6e-41 Score=322.28 Aligned_cols=169 Identities=26% Similarity=0.449 Sum_probs=148.8
Q ss_pred EEEEEEeccceeeeeEEEEeecCCccccccCCCceEEEEeecCcceeEEEEEEEeeeeCCCceEEEEecCCCCHHHHhcc
Q 007117 27 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQARPL 106 (617)
Q Consensus 27 v~IG~I~~~hGlkGevkv~~~td~p~~~f~~~~~~~l~~~~~g~~~~~~~~v~~~r~~~~~~~~ivkfegid~re~Ae~L 106 (617)
+.||+|++||||||||||+++||+|+ +|.....+|+..+ .+....++++++++|.|+ +.++++|+||+|||+|++|
T Consensus 1 ~~vG~I~~~hGlkGevkv~~~td~pe-~~~~~~~~~~~~~-~~~~~~~~~~v~~~r~~~--~~~lv~f~gi~~~e~Ae~L 76 (171)
T PRK14590 1 ISLGQLGKPFGIKGWLRVNVRGETLH-TLKAPATLKLGKE-DPQFPESEIALLEIRPHG--GKFLVRFEGYDTPEEAVKW 76 (171)
T ss_pred CeEEEEeCCEeeCeEEEEEEccCCHH-HhcCCCEEEEecC-CCCCCeeEEEEEEEEEEC--CEEEEEECCCCCHHHHHHh
Confidence 46999999999999999999999999 5666677776422 112234578999999985 3689999999999999999
Q ss_pred cCCeEEEeCCCCCCCC-CCcccHhhccCcEEEEccCCeEeE-EEEEeccCCCceEEEEEeccccccccCcccccccCCCC
Q 007117 107 VGSTLLAREGDRPELE-DGEFYTRDLVGMRVVMKETGELVG-TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDA 184 (617)
Q Consensus 107 ~G~~l~v~~~~lp~L~-e~EfY~~DLIG~~V~d~~~g~~lG-~V~dV~~~ga~dllvV~~~~~~~~~~~~~~~~~~~~~~ 184 (617)
+|++||++++++|+|+ +|||||+|||||+|+| ++|+.+| +|++|+++||||+|+|.. .
T Consensus 77 ~g~~l~i~~~~lp~l~~e~e~y~~dLiG~~V~d-~~g~~lGG~V~~v~~~~a~dllvV~~-------------------~ 136 (171)
T PRK14590 77 RGGSLFLPQELLPKIETKGEFYSEDLIGLQAID-ETGKPLNWKLTDVQDNPAHPILVFIK-------------------G 136 (171)
T ss_pred cCCEEEEEHHHCCCCCCCCCEEhHHccCcEEEe-CCCCEeeeEEEEEecCCCceEEEEEC-------------------C
Confidence 9999999999999985 9999999999999997 5677897 999999999999999973 1
Q ss_pred CCcEEEEecccCccceeecCCCEEEEeCCCCcccc
Q 007117 185 SGRLVWIPFVEEIVPIVDMNGREMQITPPKGLLEL 219 (617)
Q Consensus 185 ~gke~LIPfv~~~V~~IDle~~~I~V~~peGLLel 219 (617)
+++++||||+++||++||+++++|+|++|+||.+|
T Consensus 137 ~~ke~LiP~v~~~V~~iD~~~k~I~v~~pegl~~~ 171 (171)
T PRK14590 137 EGEEILIPFLNVFVGDLDLEKQTIVLIQPEQWNEL 171 (171)
T ss_pred CCCEEEEechHHhcceEecCCCEEEEECCchHhcC
Confidence 46899999999999999999999999999999875
No 15
>PRK14591 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=1.4e-40 Score=320.95 Aligned_cols=167 Identities=20% Similarity=0.345 Sum_probs=147.7
Q ss_pred CCeEEEEEEeccceeeeeEEEEeecCCccccccCCCceEEEEeecCcceeEEEEEEEeeeeCCCceEEEEecCCCCHHHH
Q 007117 24 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQA 103 (617)
Q Consensus 24 ~~~v~IG~I~~~hGlkGevkv~~~td~p~~~f~~~~~~~l~~~~~g~~~~~~~~v~~~r~~~~~~~~ivkfegid~re~A 103 (617)
.+++.||+|++||||||||||+|+||+|+ +|...+.+|+..+ +....+++++.+.|.|+ +.++++|+||+|||+|
T Consensus 3 ~~~v~vG~I~~~hGlkGevkv~~~td~p~-~~~~~~~~~l~~~--~~~~~~~~~v~~~~~~~--~~~lv~f~gi~dr~~A 77 (169)
T PRK14591 3 QDFVEIAKIGATYKLNGELNLYPLANSIE-TLLSYGDWYIQLP--ATNVWQQLKGESVLKRA--DKVYIKLANINNADTA 77 (169)
T ss_pred CcEEEEEEEeCCccccEEEEEEECCCCHH-HhcCCCeEEEEec--CCCceeEEEEEEEEEEC--CEEEEEEcCCCCHHHH
Confidence 34899999999999999999999999999 5655677776432 11224578889999885 4789999999999999
Q ss_pred hcccCCeEEEeCCCCCCCCCCcccHhhccCcEEEEccCCeEeEEEEEeccCCCceEEEEEeccccccccCcccccccCCC
Q 007117 104 RPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASD 183 (617)
Q Consensus 104 e~L~G~~l~v~~~~lp~L~e~EfY~~DLIG~~V~d~~~g~~lG~V~dV~~~ga~dllvV~~~~~~~~~~~~~~~~~~~~~ 183 (617)
++|+|+.||++++++|+|++|||||+|||||+|+| .+|..+|+|++|+++||||+|+|+.
T Consensus 78 e~l~g~~l~v~~~~lp~l~e~E~Y~~dLiG~~V~d-~~g~~lG~V~~v~~~ga~dll~I~~------------------- 137 (169)
T PRK14591 78 KKYVNALIGVPKRALPQLAEDEVYFKDLIGCSVKN-INNDSFGVVVDIIETGANEVLVCKE------------------- 137 (169)
T ss_pred HHhcCCEEEEEHHHCCCCCCCCEEeeeecCcEEEe-CCCCEEEEEEEEeecCCceEEEEEc-------------------
Confidence 99999999999999999999999999999999997 5688899999999999999999973
Q ss_pred CCCcEEEEecccCccceeecCCCEEEEeCCCCc
Q 007117 184 ASGRLVWIPFVEEIVPIVDMNGREMQITPPKGL 216 (617)
Q Consensus 184 ~~gke~LIPfv~~~V~~IDle~~~I~V~~peGL 216 (617)
+++++||||+++||++||+++++|+|+++.++
T Consensus 138 -~~ke~LIP~~~~~V~~iD~e~k~I~v~~~~~~ 169 (169)
T PRK14591 138 -DNSEYLIPYVKQYIVSEDLNSKKIVVDWEYDY 169 (169)
T ss_pred -CCeEEEEeChhheeeeEEcCCCEEEEecCCCC
Confidence 35899999999999999999999999998764
No 16
>PRK14592 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=3.9e-40 Score=316.69 Aligned_cols=163 Identities=26% Similarity=0.475 Sum_probs=142.1
Q ss_pred CeEEEEEEeccceeeeeEEEEeecCCccccccCCCceEEEEeecCcceeEEEEEEEeeeeCCCceEEEEecCCCCHHHHh
Q 007117 25 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQAR 104 (617)
Q Consensus 25 ~~v~IG~I~~~hGlkGevkv~~~td~p~~~f~~~~~~~l~~~~~g~~~~~~~~v~~~r~~~~~~~~ivkfegid~re~Ae 104 (617)
|++.||+|++||||||||||+++||+|+ +|.....+++ +. .++++...|.+. ++.++++|+||+|||+|+
T Consensus 1 ~~v~iG~I~~~hGlkGevkv~~~td~p~-~~~~~~~~~~-----~~---~~~~v~~~~~~~-~~~~lv~f~gi~~~~~Ae 70 (165)
T PRK14592 1 DLICLGVITSPHGIKGHVKIKTFTEDPE-NISAYGKLTD-----GS---NTYKISVVSVIG-ANLVIAKISGINSRTEAE 70 (165)
T ss_pred CEEEEEEEECCCccCEEEEEEECCCCHH-HhcCCceEEE-----CC---EEEEEEEEEEec-CCEEEEEEcCCCCHHHHH
Confidence 6899999999999999999999999999 4554444442 21 245666777653 457899999999999999
Q ss_pred cccCCeEEEeCCCCCCCCCCcccHhhccCcEEEEccCCeEeEEEEEeccCCCceEEEEEeccccccccCcccccccCCCC
Q 007117 105 PLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDA 184 (617)
Q Consensus 105 ~L~G~~l~v~~~~lp~L~e~EfY~~DLIG~~V~d~~~g~~lG~V~dV~~~ga~dllvV~~~~~~~~~~~~~~~~~~~~~~ 184 (617)
+|+|+.||++++++|+|++|||||+|||||+|+| ++|..+|+|++|+++||||+|+|+.. +
T Consensus 71 ~l~g~~l~v~~~~lp~l~e~e~y~~dLiG~~V~~-~~g~~lG~V~~v~~~ga~dvlvI~~~------------------~ 131 (165)
T PRK14592 71 LLRNKKLYVERSKLPNLNEDEFYQSDLIGMEVKL-EDNTIYGYIKKIYNFGSCDIIEISLT------------------S 131 (165)
T ss_pred HhcCCEEEEEHHHCCCCCCCCEEHHHcCCcEEEc-CCCCEEEEEEEEccCCCccEEEEEEC------------------C
Confidence 9999999999999999999999999999999996 56788999999999999999999821 1
Q ss_pred CCcEEEEecccCccceeecCCCEEEEeCCCCc
Q 007117 185 SGRLVWIPFVEEIVPIVDMNGREMQITPPKGL 216 (617)
Q Consensus 185 ~gke~LIPfv~~~V~~IDle~~~I~V~~peGL 216 (617)
.++++||||+++||++||+++++|+|++|+.+
T Consensus 132 ~~ke~LIP~v~~~V~~IDle~k~I~v~~pe~~ 163 (165)
T PRK14592 132 TKKSTMLPFTKEIFPHINVKERYIILVPPEII 163 (165)
T ss_pred CCcEEEEecchhcccEEECCCCEEEEECcccc
Confidence 46899999999999999999999999999864
No 17
>PRK14593 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=7.4e-40 Score=319.94 Aligned_cols=176 Identities=23% Similarity=0.378 Sum_probs=145.6
Q ss_pred CCeEEEEEEeccceeeeeEEEEeecCCccccccCCCceEEEEeecC---cceeEEEEEEEeeeeCCCceEEEEecCCCCH
Q 007117 24 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLG---RETIREVKLIDGREHPGQKSWILTFEGIDTV 100 (617)
Q Consensus 24 ~~~v~IG~I~~~hGlkGevkv~~~td~p~~~f~~~~~~~l~~~~~g---~~~~~~~~v~~~r~~~~~~~~ivkfegid~r 100 (617)
-+|+.||+|++||||||||||+++||+|+ +|......++ .+... ...++++++++.|.+++ +++|+||+||
T Consensus 2 ~~~i~iG~I~~~hGikGevkv~~~td~pe-~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~r~~~~----~v~f~gi~dr 75 (184)
T PRK14593 2 VSMLLVGRIGKSVGLNGGLKLHLESDFPE-CLKKGVKVSV-APLNAFSCASSFKDYVIHSYEHAKN----LLFLETIHTP 75 (184)
T ss_pred ccEEEEEEEECCEeeeEEEEEEECCCCHH-HhccCCEEEE-cccccccccCCceEEEEEEEEeeCC----EEEEcCCCCH
Confidence 35899999999999999999999999999 4654444444 22100 01245788999998752 5899999999
Q ss_pred HHHhcccCCeEEEeCCCCC---CCCCCcccHhhccCcEEEEccCCeEeEEEEEeccCCCceEEEEEeccccccccCcccc
Q 007117 101 EQARPLVGSTLLAREGDRP---ELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEA 177 (617)
Q Consensus 101 e~Ae~L~G~~l~v~~~~lp---~L~e~EfY~~DLIG~~V~d~~~g~~lG~V~dV~~~ga~dllvV~~~~~~~~~~~~~~~ 177 (617)
|+|++|+|+.||++++++| +|++|||||+|||||+|++ + |..||+|++|+++||||+|+|+..+. .
T Consensus 76 ~~Ae~l~g~~l~i~~~~l~~lp~l~edEyY~~dLiGl~V~~-~-g~~lG~V~~v~~~ga~dvlvV~~~~~---~------ 144 (184)
T PRK14593 76 EKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVVE-E-NEILGKVIEIQRISQTDYFMVETTLS---L------ 144 (184)
T ss_pred HHHHHhcCCEEEEEHHHccccCCCCCCcEEeehccCcEEEE-C-CEEeEEEEEEccCCCceEEEEEeccc---c------
Confidence 9999999999999999976 8999999999999999996 4 88999999999999999999984200 0
Q ss_pred cccCCCCCCcEEEEecccCccceeecCCCEEEEeCCCCcccc
Q 007117 178 SSSASDASGRLVWIPFVEEIVPIVDMNGREMQITPPKGLLEL 219 (617)
Q Consensus 178 ~~~~~~~~gke~LIPfv~~~V~~IDle~~~I~V~~peGLLel 219 (617)
.....++++||||+++||++||+++++|+|++|+||||-
T Consensus 145 ---~~~~~~ke~LIP~~~~~V~~VDle~k~I~v~~~~glle~ 183 (184)
T PRK14593 145 ---VEKGLAKIFLIPYRDFYIQEILLQDKKITTHNAKTLLEN 183 (184)
T ss_pred ---ccCCCCcEEEEeChhhhhceEecCCCEEEEeChHHHhhc
Confidence 000123899999999999999999999999999999974
No 18
>TIGR02273 16S_RimM 16S rRNA processing protein RimM. This family consists of the bacterial protein RimM (YfjA, 21K), a 30S ribosomal subunit-binding protein implicated in 16S ribsomal RNA processing. It has been partially characterized in Escherichia coli, is found with other translation-associated genes such as trmD. It is broadly distributed among bacteria, including some minimal genomes such the aphid endosymbiont Buchnera aphidicola. The protein contains a PRC-barrel domain that it shares with other protein families (pfam05239) and a unique domain (pfam01782). This model describes the full-length protein. A member from Arabidopsis (plant) has additional N-terminal sequence likely to represent a chloroplast transit peptide.
Probab=100.00 E-value=2e-39 Score=311.82 Aligned_cols=165 Identities=39% Similarity=0.624 Sum_probs=145.6
Q ss_pred eEEEEEEeccceeeeeEEEEeecCCccccccCCCceEEEEeecCcceeEEEEEEEeeeeCCCceEEEEecCCCCHHHHhc
Q 007117 26 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQARP 105 (617)
Q Consensus 26 ~v~IG~I~~~hGlkGevkv~~~td~p~~~f~~~~~~~l~~~~~g~~~~~~~~v~~~r~~~~~~~~ivkfegid~re~Ae~ 105 (617)
|+.||+|++|||+||||||+++||+|+.+|.. ...++... + ...+++++++.|.++ +.++++|+||+|||+|++
T Consensus 1 ~v~iG~I~~~hGlkGevkv~~~td~p~~~~~~-~~~~~~~~--~-~~~~~~~v~~~~~~~--~~~lv~f~gi~~~~~Ae~ 74 (165)
T TIGR02273 1 LLVVGKIGGPHGIKGEVKVKSFTDFPESLFDY-GPWLILKG--S-KQWQTVKVARVRKQN--NKLIVKFEGIDDREAAEA 74 (165)
T ss_pred CEEEEEEECCcccCEEEEEEEcCCCHHHHcCC-CcEEEEcC--C-CceEEEEEEEEEEEC--CEEEEEECCCCCHHHHHH
Confidence 58999999999999999999999999976654 44454432 2 134578899998884 478999999999999999
Q ss_pred ccCCeEEEeCCCCCCCCCCcccHhhccCcEEEEccCCeEeEEEEEeccCCCceEEEEEeccccccccCcccccccCCCCC
Q 007117 106 LVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDAS 185 (617)
Q Consensus 106 L~G~~l~v~~~~lp~L~e~EfY~~DLIG~~V~d~~~g~~lG~V~dV~~~ga~dllvV~~~~~~~~~~~~~~~~~~~~~~~ 185 (617)
|+|+.||++++++|+|++|||||+|||||+|+| .+|..+|+|++|+++||||+|+|+.. ++
T Consensus 75 L~g~~l~i~~~~lp~l~e~e~y~~dLiG~~V~d-~~~~~lG~V~~v~~~~a~dll~V~~~------------------~~ 135 (165)
T TIGR02273 75 LKGLELFVPREALPELEEDEYYWTDLIGLEVVT-EEGEELGKVVEILETGANDVLVVRSK------------------KG 135 (165)
T ss_pred hcCCEEEEEHHHCCCCCCCCEEhhHhCCcEEEc-CCCcEEEEEEEEecCCCccEEEEEEC------------------CC
Confidence 999999999999999999999999999999996 56788999999999999999999841 14
Q ss_pred CcEEEEecccCccceeecCCCEEEEeCCCC
Q 007117 186 GRLVWIPFVEEIVPIVDMNGREMQITPPKG 215 (617)
Q Consensus 186 gke~LIPfv~~~V~~IDle~~~I~V~~peG 215 (617)
++++||||+++||++||+++++|+|++|+|
T Consensus 136 ~ke~liP~~~~fv~~ID~~~~~I~v~~p~G 165 (165)
T TIGR02273 136 KKEVLIPFVEEIVKEIDLEKKIITVDWPEG 165 (165)
T ss_pred CcEEEEECchhhCCEEeCCCCEEEEECCCC
Confidence 689999999999999999999999999997
No 19
>PRK14594 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=2.8e-39 Score=310.88 Aligned_cols=163 Identities=23% Similarity=0.350 Sum_probs=142.1
Q ss_pred eEEEEEEeccceeeeeEEEEeecCCccccccCCCceEEEEeecCcceeEEEEEEEeeeeCCCceEEEEecCCCCHHHHhc
Q 007117 26 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQARP 105 (617)
Q Consensus 26 ~v~IG~I~~~hGlkGevkv~~~td~p~~~f~~~~~~~l~~~~~g~~~~~~~~v~~~r~~~~~~~~ivkfegid~re~Ae~ 105 (617)
++.||+|++|||+||||||+++||.|+.++......|+..+ .+ ...++++++++|.|+ +.++++|+||+|||+|++
T Consensus 1 ~~~iG~I~~~hGlkGevkV~~~td~~~~~~~~~~~~~~~~~-~~-~~~~~~~v~~~r~~~--~~~lvkf~gi~dr~~Ae~ 76 (166)
T PRK14594 1 MFVKGIILSSYGINGYAKVKSISNNFCDFINLKNNKLVLKK-SN-CSSIEVKVEDVSLKN--NSLLLKFEEFNAPEPIKP 76 (166)
T ss_pred CEEEEEEECceeeeEEEEEEEccCCHHHhhcccCcEEEEec-CC-CcEEEEEEEEEEEEC--CEEEEEEcCCCCHHHHHH
Confidence 47899999999999999999999977753333333333322 12 234678999999985 469999999999999999
Q ss_pred ccCCeEEEeCCCCCCCCCCcccHhhccCcEEEEccCCeEeEEEEEeccCCCceEEEEEeccccccccCcccccccCCCCC
Q 007117 106 LVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDAS 185 (617)
Q Consensus 106 L~G~~l~v~~~~lp~L~e~EfY~~DLIG~~V~d~~~g~~lG~V~dV~~~ga~dllvV~~~~~~~~~~~~~~~~~~~~~~~ 185 (617)
|+|+.||++++++|+|++|||||+|||||+|++ + |..+|+|++|+++||||+|+|+. +
T Consensus 77 L~g~~l~v~~~~lp~l~edE~Y~~dLiG~~V~~-~-g~~lG~V~~v~~~ga~dll~V~~--------------------~ 134 (166)
T PRK14594 77 LIGFELWVDDELASKLEEGEYYFGKLIGYAIVN-D-GKELGEVVSFFECLNSVLLEVKV--------------------G 134 (166)
T ss_pred hcCCEEEEEHHHCCCCCCCcEeHhHccCeEEEE-C-CEEEEEEEEEeeCCCcEEEEEEe--------------------C
Confidence 999999999999999999999999999999997 4 88899999999999999999973 4
Q ss_pred CcEEEEecccCccceeecCCCEEEEeCCC
Q 007117 186 GRLVWIPFVEEIVPIVDMNGREMQITPPK 214 (617)
Q Consensus 186 gke~LIPfv~~~V~~IDle~~~I~V~~pe 214 (617)
++++||||+++||++||+++++|+|++|+
T Consensus 135 ~ke~LIPfv~~~V~~VD~~~k~I~v~~~~ 163 (166)
T PRK14594 135 IKLFFVPFLSIYLGDINRELKTIELKVLD 163 (166)
T ss_pred CEEEEEeChHheeeeEEcCCCEEEEEeHH
Confidence 68999999999999999999999999987
No 20
>PRK13829 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=8.5e-38 Score=299.46 Aligned_cols=161 Identities=25% Similarity=0.382 Sum_probs=137.5
Q ss_pred CeEEEEEEeccceeeeeEEEEeecCCccccccCCCceEEEEeecCcceeEEEEEEEeeeeCCCceEEEEecCCCCHHHHh
Q 007117 25 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQAR 104 (617)
Q Consensus 25 ~~v~IG~I~~~hGlkGevkv~~~td~p~~~f~~~~~~~l~~~~~g~~~~~~~~v~~~r~~~~~~~~ivkfegid~re~Ae 104 (617)
|++.||+|++||||||||||+ |+|+ ++ ..+.+|+... + .++++++|.|+ +.++++|+||+|||+|+
T Consensus 2 ~~i~iG~I~~~hGikGevkv~---d~p~-~~-~~~~~~~~~~--~-----~~~v~~~r~~~--~~~l~~f~gi~~r~~Ae 67 (162)
T PRK13829 2 RRTEIGRFGGPYGVQGGLKFR---GEPV-VL-DLPRVYVEGL--G-----WRAIERAERVG--PELVLHLAGVTSREGAE 67 (162)
T ss_pred CEEEEEEEeCCeeecEEEEEe---cchH-hc-cCCEEEEcCC--C-----EEEEEEEEEEC--CEEEEEECCCCCHHHHH
Confidence 899999999999999999999 7888 44 4566665321 1 24688889885 46899999999999999
Q ss_pred cccCCeEEEeCCCCCCCCCCcccHhhccCcEEEEccCCeEeEEEEEeccCCCceEEEEEeccccccccCcccccccCCCC
Q 007117 105 PLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDA 184 (617)
Q Consensus 105 ~L~G~~l~v~~~~lp~L~e~EfY~~DLIG~~V~d~~~g~~lG~V~dV~~~ga~dllvV~~~~~~~~~~~~~~~~~~~~~~ 184 (617)
+|+|++||++++++|+|++|||||+|||||+|+ ++|+.+|+|++|+++||||+|+|+... + +..
T Consensus 68 ~l~g~~l~v~~~~lp~L~e~EyY~~dLiG~~V~--~~g~~lG~V~~v~~~ga~dvlvV~~~~--------~------~~~ 131 (162)
T PRK13829 68 ALVGLRVYADDADLPPLEEGSYYYHELRGLPVY--VDGEPLGEVVDVEDAGAQDLLVIRHVG--------G------SLR 131 (162)
T ss_pred HhcCCEEEEEHHHCCCCCCCCEEehhccCeEEE--ECCEeeEEEEEEecCCCceEEEEEeCC--------C------CCc
Confidence 999999999999999999999999999999999 468899999999999999999998520 0 000
Q ss_pred CCcEEEEecccCccceeecCCCEEEEeCCCCccc
Q 007117 185 SGRLVWIPFVEEIVPIVDMNGREMQITPPKGLLE 218 (617)
Q Consensus 185 ~gke~LIPfv~~~V~~IDle~~~I~V~~peGLLe 218 (617)
+.+++||||+++|| |+++++|+|++|+||||
T Consensus 132 ~~k~~LIP~v~~~V---~~~~~~I~v~~peGlld 162 (162)
T PRK13829 132 ARATYFVPLQAPYV---RVELDGITADAIPGLLD 162 (162)
T ss_pred cCceEEEccccceE---EccCCEEEEeCCccccC
Confidence 12799999999986 58999999999999985
No 21
>PRK13828 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=2.5e-37 Score=296.05 Aligned_cols=156 Identities=29% Similarity=0.466 Sum_probs=138.1
Q ss_pred eeeeEEEEeecCCccccccCCCceEEEEeecCcceeEEEEEEEeeeeCCCceEEEEecCCCCHHHHhcccCCeEEEeCCC
Q 007117 38 LQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGD 117 (617)
Q Consensus 38 lkGevkv~~~td~p~~~f~~~~~~~l~~~~~g~~~~~~~~v~~~r~~~~~~~~ivkfegid~re~Ae~L~G~~l~v~~~~ 117 (617)
|||||||+++||+|+ +|.....+|+ . .+ .++++++++|.|+ +.++++|+||+||++|++|+|+.||+++++
T Consensus 1 ikGevkv~~~td~p~-~~~~~~~~~~-~--~~---~~~~~v~~~r~~~--~~~lv~f~gi~dr~~Ae~L~g~~l~i~~~~ 71 (161)
T PRK13828 1 VRGEVRLKSFTEDPL-AIADYGPLTT-E--DG---ARSFTVALARPAK--DGLVARLKGVATREAAEALRGLELYVPRDR 71 (161)
T ss_pred CcEEEEEEEcCCCHH-HhccCCeEEE-C--CC---CEEEEEEEEEEEC--CEEEEEECCCCCHHHHHHhcCCEEEEEHHH
Confidence 699999999999999 5665554443 2 12 2478999999985 469999999999999999999999999999
Q ss_pred CCCCCCCcccHhhccCcEEEEccCCeEeEEEEEeccCCCceEEEEEeccccccccCcccccccCCCCCCcEEEEecccCc
Q 007117 118 RPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEI 197 (617)
Q Consensus 118 lp~L~e~EfY~~DLIG~~V~d~~~g~~lG~V~dV~~~ga~dllvV~~~~~~~~~~~~~~~~~~~~~~~gke~LIPfv~~~ 197 (617)
+|+|++|||||+|||||+|+| .+|..+|+|++|+++||||+|+|+.. ++++++||||+++|
T Consensus 72 lp~l~e~e~y~~dLiG~~V~d-~~g~~lG~V~~V~~~ga~dvlvV~~~------------------~~~ke~LIP~v~~~ 132 (161)
T PRK13828 72 LPELDDDEFYHADLIGLAAVD-TGGALLGRVKAVHNFGAGDILEIAPP------------------GGGPTLLLPFTRAV 132 (161)
T ss_pred CCCCCCCCEEhhhccCCEEEe-CCCCEEEEEEEEccCCCccEEEEEEC------------------CCCcEEEEeccccc
Confidence 999999999999999999996 56888999999999999999999831 14689999999999
Q ss_pred cceeecCCCEEEEeCCCCcccccC
Q 007117 198 VPIVDMNGREMQITPPKGLLELNL 221 (617)
Q Consensus 198 V~~IDle~~~I~V~~peGLLel~~ 221 (617)
|++||+++++|+|++|+||||+..
T Consensus 133 V~~VDl~~~~I~v~~peGLl~~~~ 156 (161)
T PRK13828 133 VPTVDLAAGRVVADPPAEIEGDEP 156 (161)
T ss_pred cCeEECCCCEEEEeCCccccCCCC
Confidence 999999999999999999999864
No 22
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.3e-29 Score=264.69 Aligned_cols=322 Identities=14% Similarity=0.180 Sum_probs=240.0
Q ss_pred HhhhhhHHhhhhhHHHHHHHHHHHHcCccccccccCCCCHHHHHHHHHHHhcCCHHHHHHHHHhccCCccccchhhhhhh
Q 007117 231 RRQLEWKERKKFQKRLIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNATELMNA 310 (617)
Q Consensus 231 ~~~~~~~~~~k~~~~~~~l~~~L~~~gQ~HLl~~~~~l~~~ek~~L~~ql~~iD~~~l~~~~~~~~~~~~~~~~~~~~~~ 310 (617)
.++.+|.++.+.... ..+++.|. ||+ ++-..++|+.+-.++..+ +..++|+++.-. +.-.
T Consensus 14 ~~~~~F~~~~~~~~~-s~mk~~l~-----~l~---~~~~~~~k~~~~~e~~~F-~~Lf~RyL~~~~-~~~~--------- 73 (498)
T KOG2638|consen 14 ESSEEFDSVTKDEAL-SQMKNELD-----KLL---STSEPEDKNHFKTELSGF-FNLFSRYLREKA-PTID--------- 73 (498)
T ss_pred ccHHHHHHHHHHHHH-HHHHHHHH-----hcc---ccCchhhhhcchhhHHHH-HHHHHHHHhccC-Cccc---------
Confidence 347789998887764 67777776 443 233346677776666654 234555554211 1111
Q ss_pred hhhhhhcccccCCCCCCCCCCCchhhhccchhHHHhchhhhcCCceEEEEEccCCCCC-CCCCCCcccccCCCCcchHHH
Q 007117 311 TKAELMISSLKISGEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALL 389 (617)
Q Consensus 311 ~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK~~~i~l~s~kslf~l 389 (617)
.+.+.+.|.+ .+.+ .+.+. .. ..+-..++ |.||+.|+||+||. ||.+||++ |++..+.||++|
T Consensus 74 -----wdkI~~p~~d-~vv~---y~~i~---~~-~~~~~~L~--KLavlKLNGGlGttmGc~gPKS~-ieVR~g~tFLDL 137 (498)
T KOG2638|consen 74 -----WDKIRPPPED-AVVP---YDDIK---NV-ELSKSLLN--KLAVLKLNGGLGTTMGCKGPKSV-IEVRDGLTFLDL 137 (498)
T ss_pred -----hhhccCCChh-hccc---ccccc---ch-hhHHHhhh--heEEEEecCCcCCccccCCCcee-EEEcCCCchhHH
Confidence 2346665555 3221 22232 22 45666676 89999999999999 99999996 789999999888
Q ss_pred HHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccceecc-cCC-
Q 007117 390 QTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILM-KSP- 467 (617)
Q Consensus 390 ~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FGl~~~~v~~f~Q~~lP~~~~~~~g~~~gkill-~~~- 467 (617)
. ++|++.|.+ .+.+.+|+++|+|+.|+++|.++++++.++- -+|..|.|++.|.++.++-. .+-. +.+
T Consensus 138 ~--V~QIe~LN~-~Y~~dVPlvLMNSfnTdedT~kil~ky~~~k---v~i~TF~QS~~PRi~~etlL----Pv~~~~~d~ 207 (498)
T KOG2638|consen 138 T--VRQIENLNK-TYNVDVPLVLMNSFNTDEDTQKILKKYAGSK---VDIKTFNQSKYPRIDKETLL----PVPKLEADS 207 (498)
T ss_pred H--HHHHHHHHh-hcCCCCCEEEecccccchHHHHHHHHhcCCc---eeEEEeccccCCcccccccc----CCCcccCCC
Confidence 4 477888887 6789999999999999999999999987764 48999999999999988211 1111 222
Q ss_pred CCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCcccccccHHHHHHHHHcCCcEEEEEeeccCCcccc-----
Q 007117 468 WETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIGNSMFLGFVKSCGADIGFQISEYAKHSEER----- 542 (617)
Q Consensus 468 ~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~~~DP~flG~~~~~~~d~~~kvV~k~~~~~E~----- 542 (617)
..=+|.|+|||++|.+|+.||+||++.+.|.+|++|.|+||++|.+|--.|-+.+.++++..++|.+|+ .++-+
T Consensus 208 ~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL~ILn~~i~~~~ey~MEvTdKT-~aDvKgGtLi 286 (498)
T KOG2638|consen 208 DNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDLNILNHVINNNIEYLMEVTDKT-RADVKGGTLI 286 (498)
T ss_pred CcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeHHHHHHHhcCCCceEEEecccc-hhhcccceEE
Confidence 446899999999999999999999999999999999999999999999999999999999999999999 44421
Q ss_pred ---------------------------------ccceeeHHHHHHhhhh-hccccccccccCCCcccccCCCcceecCCC
Q 007117 543 ---------------------------------FNTMLSMNVMKKLTNH-INKLEFYATPKLNSHVEKVDKEFIDVIPAA 588 (617)
Q Consensus 543 ---------------------------------~~h~fs~~fl~~~~~~-~~~L~~H~a~Kkip~~~~~~~~g~~v~P~~ 588 (617)
-|-++.+.-++++... .-+|+.|...|+|-+ +
T Consensus 287 ~y~G~lrlLEiaQVP~ehv~eFkS~kkFkifNTNNlWinLkavKrlve~~~l~meIi~N~kti~~-----~--------- 352 (498)
T KOG2638|consen 287 QYEGKLRLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWINLKAVKKLVEENALNMEIIVNPKTIDR-----G--------- 352 (498)
T ss_pred eecCEEEEEEeccCChhHhhhhccceeEEEeccCCeEEehHHHHHHhhcCcccceeecChhhccC-----C---------
Confidence 1567888888888664 246899999999843 1
Q ss_pred CCeeEEEEEEecccCCCCCCceEEEEe
Q 007117 589 PNSYELRSSIYSCLNACSLDKVCVMEI 615 (617)
Q Consensus 589 pN~~K~E~fifD~f~~~~~~~~~~~ev 615 (617)
-|.+.||.=|=++..+=+ +..++-|
T Consensus 353 ~~viQleTa~GaaIk~F~--na~gv~V 377 (498)
T KOG2638|consen 353 IEVIQLETAAGAAIKFFD--NAIGVNV 377 (498)
T ss_pred ceEEEEhhhhhHHHHhCC--Cceeeec
Confidence 246777777766666655 5555544
No 23
>PF01782 RimM: RimM N-terminal domain; InterPro: IPR002676 The RimM protein is essential for efficient processing of 16S rRNA []. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes [].; GO: 0006364 rRNA processing; PDB: 2QGG_A 3A1P_C 2DOG_A 2DYI_A 3H9N_A 2F1L_A.
Probab=99.75 E-value=7.1e-18 Score=144.38 Aligned_cols=84 Identities=39% Similarity=0.574 Sum_probs=68.6
Q ss_pred EEEEEeccceeeeeEEEEeecCCccccccCCCceEEEEeecCcceeEEEEEEEeeeeCCCceEEEEecCCCCHHHHhccc
Q 007117 28 DVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQARPLV 107 (617)
Q Consensus 28 ~IG~I~~~hGlkGevkv~~~td~p~~~f~~~~~~~l~~~~~g~~~~~~~~v~~~r~~~~~~~~ivkfegid~re~Ae~L~ 107 (617)
+||+|++||||||||||.++||+|+. |...+.+|+... ...+++++++++|.|+ +.++++|+||+|||+|++|+
T Consensus 1 ~vG~I~~~hGlkG~vkv~~~td~~~~-~~~~~~~~~~~~---~~~~~~~~v~~~~~~~--~~~i~~~~gi~~r~~Ae~l~ 74 (84)
T PF01782_consen 1 VVGRIGKPHGLKGEVKVRPFTDFPER-LFNLKQVYLEKR---NGEWRPLKVESVRPHG--KSLIVKFEGIDDREAAEALR 74 (84)
T ss_dssp EEEEEEEEETTTTEEEEEE-SSSGGG-GGGSSCEEEE-E---TTEEEEEEEEEEEEET--TEEEEEETT--SHHHHHTTT
T ss_pred CEEEECCCEecCEEEEEEEecCCHHH-HcCCCeEEEEEc---CCceEEEEEEEEEEeC--CEEEEEEcCCCCHHHHHhhC
Confidence 58999999999999999999999996 555677777622 2346789999999883 68999999999999999999
Q ss_pred CCeEEEeCCC
Q 007117 108 GSTLLAREGD 117 (617)
Q Consensus 108 G~~l~v~~~~ 117 (617)
|+.|||+++|
T Consensus 75 g~~l~v~r~~ 84 (84)
T PF01782_consen 75 GCELYVPRDD 84 (84)
T ss_dssp T-EEEEEGCG
T ss_pred CCEEEEECCC
Confidence 9999999985
No 24
>PF05239 PRC: PRC-barrel domain; InterPro: IPR007903 The PRC-barrel is an all beta barrel domain found in photosynthetic reaction centre subunit H of the purple bacteria. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the C terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [].; PDB: 2QGG_A 3H9N_A 2WJN_H 2PRC_H 5PRC_H 2X5V_H 1DXR_H 1R2C_H 3G7F_H 1PRC_H ....
Probab=98.56 E-value=2.9e-07 Score=77.34 Aligned_cols=78 Identities=28% Similarity=0.517 Sum_probs=58.7
Q ss_pred CCcccHhhccCcEEEEccCCeEeEEEEEe-ccCCCceEEEEEeccccccccCcccccccCCCCCCcEEEEecccCcccee
Q 007117 123 DGEFYTRDLVGMRVVMKETGELVGTVVNV-FNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 201 (617)
Q Consensus 123 e~EfY~~DLIG~~V~d~~~g~~lG~V~dV-~~~ga~dllvV~~~~~~~~~~~~~~~~~~~~~~~gke~LIPfv~~~V~~I 201 (617)
+++||++||+|++|++ .+|+.+|+|.|| ++..++.+..+.... .+. ....++.++||+. ..+
T Consensus 1 ~~~~~~s~l~g~~V~~-~~G~~iG~V~di~id~~~~~i~~i~v~~-------~~~-----~~~~~~~~~iP~~----~~v 63 (79)
T PF05239_consen 1 MDEFRLSELIGKEVID-RDGEKIGKVKDIVIDPKTGKIVGIVVSS-------GGF-----FGIGGKKVLIPWD----QIV 63 (79)
T ss_dssp -CHGCHHHHTTSEEEE-TTSCEEEEEEEEEEETTTTEEEEEEEEE-------TTS-----TCSSSEEEEEEGG----EEE
T ss_pred CCeEEhHHccCCEEEc-CCCCEEEEEEEEEEeCCCCCEEEEEEcC-------CCc-----cCcCCcEEEEcCe----EeE
Confidence 5799999999999997 569999999999 787777776554311 000 0013488999999 678
Q ss_pred ecCCCEEEEeCCCCcc
Q 007117 202 DMNGREMQITPPKGLL 217 (617)
Q Consensus 202 Dle~~~I~V~~peGLL 217 (617)
+..+++|.|++++++|
T Consensus 64 ~~~~~~i~v~~~~~~~ 79 (79)
T PF05239_consen 64 DIGGDRIIVDPPKEQL 79 (79)
T ss_dssp EECTTEEEESSSTG--
T ss_pred EecCCEEEEcCCCCCC
Confidence 9999999999999876
No 25
>cd00226 PRCH Photosynthetic reaction center (RC) complex, subunit H; RC is an integral membrane protein-pigment complex which catalyzes light-induced reduction of ubiquinone to ubiquinol, generating a transmembrane electrochemical gradient of protons used to produce ATP by ATP synthase. Subunit H is positioned mainly in the cytoplasm with one transmembrane alpha helix. Provides proton transfer pathway (water channels) connecting the terminal quinone electron acceptor of RC, to the aqueous phase. Found in photosynthetic bacteria: alpha, beta, and gamma proteobacteria.
Probab=96.62 E-value=0.0059 Score=62.13 Aligned_cols=88 Identities=25% Similarity=0.342 Sum_probs=62.1
Q ss_pred cCCeEEEeCCCCCCCCC------------CcccH----hhccCcEEEEccCCeEeEEEEEecc---CCCceEEEEEeccc
Q 007117 107 VGSTLLAREGDRPELED------------GEFYT----RDLVGMRVVMKETGELVGTVVNVFN---SGANDLLHVMCYSS 167 (617)
Q Consensus 107 ~G~~l~v~~~~lp~L~e------------~EfY~----~DLIG~~V~d~~~g~~lG~V~dV~~---~ga~dllvV~~~~~ 167 (617)
+|---|++|.|.|+|.- .+|-+ .|++|++|+. .+|+.+|+|+|++- .+.-..|+|+..
T Consensus 108 vGpas~a~R~d~pdl~~~g~~~IvPlr~~~~f~v~~~~~DprGl~V~g-~DGevvGtV~Dv~vD~~e~~iRYLeVdtg-- 184 (246)
T cd00226 108 VGPASWAERRDLPDLDVHGHPKIVPMRVATGFSVAAGDVDPRGLPVVG-ADGEVAGKVTDLWVDRPEQLFRYLEVELA-- 184 (246)
T ss_pred cCcccccccCCCCccCCCCCeeEEeeeccCCceecCCCCCCCCCEeEc-CCCcEeEEEEEEEEcCCcceEEEEEEEcC--
Confidence 45556777777776641 22332 5899999996 57999999999954 447799999741
Q ss_pred cccccCcccccccCCCCCCcEEEEecccCccceeecCCCEEEEe-CCCCccc
Q 007117 168 VNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREMQIT-PPKGLLE 218 (617)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~gke~LIPfv~~~V~~IDle~~~I~V~-~peGLLe 218 (617)
..++.+|||+.- ++++.++|.|+ +..+.++
T Consensus 185 ----------------~~gkkVLLPi~~-----~rId~~~V~V~~Lt~~Q~~ 215 (246)
T cd00226 185 ----------------GGGRTVLLPMGF-----AKVKSDRVKVTAILSEHFA 215 (246)
T ss_pred ----------------CCCCEEEEEeEE-----EEecCCEEEEecccHHHHh
Confidence 026899999664 34458999998 5566654
No 26
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=95.40 E-value=0.11 Score=56.08 Aligned_cols=139 Identities=14% Similarity=0.158 Sum_probs=77.7
Q ss_pred CceEEEEEccCCCCCC--CC-C-CCcccccCCCCc-chHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 007117 354 GKKAMVLVVHNSEEGN--EC-D-PHSVVSESTANK-SLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 428 (617)
Q Consensus 354 gkvavvllAGG~GtRg--~~-~-pK~~~i~l~s~k-slf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~ 428 (617)
+++.+|+||||.|||+ .+ + ||.+ +++ .+| ++.+... +.|.+.+ .. -.+|.|+..-.+..++||.+
T Consensus 1 ~~~~avila~g~gtRL~PLT~~~PKpL-lpV-~gk~PlIe~~l-----~~L~~~G--i~-~I~iv~~~~~~~~I~~~l~~ 70 (369)
T TIGR02092 1 NKMSAIINLTESSKNLSPLTKVRPLAS-LPF-GGRYRLIDFPL-----SNMVNAG--IR-NVFIFFKNKERQSLFDHLGS 70 (369)
T ss_pred CcEEEEEECCCCCccccccccCCcccc-ccc-CCeeeEEEEEh-----hhhhccC--CC-EEEEEeCCCcHHHHHHHHhC
Confidence 3678899999999994 23 3 9984 344 466 7877654 4444422 21 45677776544589999988
Q ss_pred CCCCCCCCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCc
Q 007117 429 NDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANP 508 (617)
Q Consensus 429 ~~~FGl~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN 508 (617)
...||++..+. .+..+ ...+ ..|-|.||.+..... ++.+...+-+++.+.+-|+
T Consensus 71 ~~~~~~~~~~~------~~~~~------------~~~e-----~~~l~tg~~~a~~~a---~~~l~~~~~~~~lvlnGD~ 124 (369)
T TIGR02092 71 GREWDLHRKRD------GLFVF------------PYND-----RDDLSEGGKRYFSQN---LEFLKRSTSEYTVVLNSHM 124 (369)
T ss_pred CCCCCcccccC------cEEEE------------eccC-----CCCcccChHHHHHHH---HHHHHhCCCCEEEEECCCE
Confidence 77787643211 00000 0000 123344554432222 2223222236888888887
Q ss_pred cccc-ccHHHHHHHHHcCCcEE
Q 007117 509 RNAI-GNSMFLGFVKSCGADIG 529 (617)
Q Consensus 509 ~l~~-~DP~flG~~~~~~~d~~ 529 (617)
+.-. +.+ ++-+|.+++++++
T Consensus 125 l~~~dl~~-ll~~h~~~~a~~t 145 (369)
T TIGR02092 125 VCNIDLKA-VLKYHEETGKDIT 145 (369)
T ss_pred EEecCHHH-HHHHHHHcCCCEE
Confidence 4332 333 4667777788764
No 27
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=94.96 E-value=0.51 Score=46.33 Aligned_cols=154 Identities=12% Similarity=0.104 Sum_probs=88.5
Q ss_pred EEEEccCCCCCCC----CCCCcccccCCCCc-chHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCC
Q 007117 358 MVLVVHNSEEGNE----CDPHSVVSESTANK-SLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHF 432 (617)
Q Consensus 358 vvllAGG~GtRg~----~~pK~~~i~l~s~k-slf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~F 432 (617)
+|+||||.|||.. ..||.+ +++ -++ ++++... +.+.+. +. =.++|.|+.. .+...++|.+...|
T Consensus 1 avILAaG~gtRl~plt~~~pK~l-lpv-~g~~pli~~~l-----~~l~~~--gi-~~iivv~~~~-~~~i~~~~~~~~~~ 69 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPA-VPF-GGRYRLIDFPL-----SNMVNS--GI-RNVGVLTQYK-SRSLNDHLGSGKEW 69 (200)
T ss_pred CEEeCCCCCcccchhhcCCccee-eEE-CCeeeeHHHHH-----HHHHHC--CC-CEEEEEeCCC-hHHHHHHHhCCCcc
Confidence 3789999999953 349983 344 345 7866654 444432 22 2467777755 67888899876667
Q ss_pred CCCCC--cEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCccc
Q 007117 433 AFDSK--KVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRN 510 (617)
Q Consensus 433 Gl~~~--~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l 510 (617)
|++.. .+.+.. .. ...-.-.|-|.|+-..+-.. .+...+-+++.|.+-|++.
T Consensus 70 ~~~~~~~~~~~~~--------~~-------------~~~~~~~~~Gta~al~~a~~-----~i~~~~~~~~lv~~gD~v~ 123 (200)
T cd02508 70 DLDRKNGGLFILP--------PQ-------------QRKGGDWYRGTADAIYQNLD-----YIERSDPEYVLILSGDHIY 123 (200)
T ss_pred cCCCCCCCEEEeC--------cc-------------cCCCCCcccCcHHHHHHHHH-----HHHhCCCCEEEEecCCEEE
Confidence 76411 121110 00 00012346677775443322 2333334778888889854
Q ss_pred cc-ccHHHHHHHHHcCCcEEEEEeeccCCccccccceeeHHHHHHh
Q 007117 511 AI-GNSMFLGFVKSCGADIGFQISEYAKHSEERFNTMLSMNVMKKL 555 (617)
Q Consensus 511 ~~-~DP~flG~~~~~~~d~~~kvV~k~~~~~E~~~h~fs~~fl~~~ 555 (617)
.. +. .++-++..++.+++.-+. . -...++|+.+++..+
T Consensus 124 ~~~~~-~~l~~~~~~~~~~t~~~~--~----~~g~yi~~~~~~~~~ 162 (200)
T cd02508 124 NMDYR-EMLDFHIESGADITVVYK--A----SMGIYIFSKDLLIEL 162 (200)
T ss_pred ecCHH-HHHHHHHHcCCCEEEEEh--h----cCEEEEEEHHHHHHH
Confidence 33 43 356778888888765443 1 112478998887654
No 28
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=94.66 E-value=0.074 Score=54.10 Aligned_cols=66 Identities=11% Similarity=0.134 Sum_probs=49.1
Q ss_pred eEEEEEccCCCCCCCC-CCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCC
Q 007117 356 KAMVLVVHNSEEGNEC-DPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDH 431 (617)
Q Consensus 356 vavvllAGG~GtRg~~-~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~ 431 (617)
...|+||.|.|+|++. .||.+ +++. ++++...+. ++|++.+ .--++|.|+....+....|+.++++
T Consensus 4 ~kavILAAG~GsRlg~~~PK~L-vev~-gr~ii~~~i-----~~L~~~g---i~e~vvV~~g~~~~lve~~l~~~~~ 70 (239)
T COG1213 4 MKAVILAAGFGSRLGPDIPKAL-VEVG-GREIIYRTI-----ENLAKAG---ITEFVVVTNGYRADLVEEFLKKYPF 70 (239)
T ss_pred eeEEEEecccccccCCCCCchh-hhcC-CeEeHHHHH-----HHHHHcC---CceEEEEeccchHHHHHHHHhcCCc
Confidence 3578999999999554 59995 5654 888865554 6666532 1246899999999999999998764
No 29
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=94.32 E-value=0.12 Score=52.51 Aligned_cols=64 Identities=17% Similarity=0.261 Sum_probs=42.1
Q ss_pred eEEEEEccCCCCC-CCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 007117 356 KAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 428 (617)
Q Consensus 356 vavvllAGG~GtR-g~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~ 428 (617)
|++|+||||.|+| |...||-+ +.+ .++++++... +.+.+. ... =-++|.+++...+.+++.+.+
T Consensus 1 V~aIilAaG~G~R~g~~~pKQf-~~l-~Gkpvl~~tl-----~~f~~~-~~i-~~Ivvv~~~~~~~~~~~~~~~ 65 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGSGIPKQF-LEL-GGKPVLEYTL-----EAFLAS-PEI-DEIVVVVPPEDIDYVEELLSK 65 (221)
T ss_dssp EEEEEEESS-STCCTSSS-GGG-SEE-TTEEHHHHHH-----HHHHTT-TTE-SEEEEEESGGGHHHHHHHHHH
T ss_pred CEEEEeCCccchhcCcCCCCee-eEE-CCeEeHHHHH-----HHHhcC-CCC-CeEEEEecchhHHHHHHhhcC
Confidence 6899999999999 66669983 344 6899877544 444331 111 136666777777888888776
No 30
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=94.30 E-value=0.6 Score=46.53 Aligned_cols=129 Identities=11% Similarity=0.028 Sum_probs=74.6
Q ss_pred EEEEccCCCCCCC----CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCC
Q 007117 358 MVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 433 (617)
Q Consensus 358 vvllAGG~GtRg~----~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FG 433 (617)
+|+||||.|||+. ..||.+ +++ .++++.+... +.+.+.+ . =-++|.|.. ..+.++++|.+...++
T Consensus 3 aiIla~G~g~Rl~plt~~~pK~l-lpi-~g~piI~~~l-----~~l~~~G--i-~~I~iv~~~-~~~~i~~~l~~~~~~~ 71 (217)
T cd04197 3 AVVLADSFNRRFRPLTKEKPRCL-LPL-ANVPLIDYTL-----EFLALNG--V-EEVFVFCCS-HSDQIKEYIEKSKWSK 71 (217)
T ss_pred EEEEcCCCcccccccccCCCcee-eEE-CCEehHHHHH-----HHHHHCC--C-CeEEEEeCC-CHHHHHHHHhhccccc
Confidence 5899999999943 239983 333 4668876654 4554422 2 135677775 6788999999866665
Q ss_pred CCCC--cEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCcccc
Q 007117 434 FDSK--KVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNA 511 (617)
Q Consensus 434 l~~~--~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~ 511 (617)
+... .+.+. . + ..+.|-|+.++.+...+.+ -+++.+.+-|++.-
T Consensus 72 ~~~~~~~i~~~--------~-~------------------~~~~~~~~al~~~~~~~~~-------~~~flv~~gD~i~~ 117 (217)
T cd04197 72 PKSSLMIVIII--------M-S------------------EDCRSLGDALRDLDAKGLI-------RGDFILVSGDVVSN 117 (217)
T ss_pred cccCcceEEEE--------e-C------------------CCcCccchHHHHHhhcccc-------CCCEEEEeCCeeec
Confidence 4321 11111 0 0 1234556766665443322 23456777777654
Q ss_pred -cccHHHHHHHHHc-----CCcEEEEE
Q 007117 512 -IGNSMFLGFVKSC-----GADIGFQI 532 (617)
Q Consensus 512 -~~DP~flG~~~~~-----~~d~~~kv 532 (617)
.... ++-+|... ++++..-+
T Consensus 118 ~dl~~-~l~~h~~~~~~~~~a~~t~~~ 143 (217)
T cd04197 118 IDLKE-ILEEHKERRKKDKNAIMTMVL 143 (217)
T ss_pred cCHHH-HHHHHHHhhccccCceEEEEE
Confidence 2434 56788773 67776433
No 31
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=94.06 E-value=0.52 Score=44.20 Aligned_cols=139 Identities=14% Similarity=0.150 Sum_probs=79.2
Q ss_pred EEEEccCCCCC-CCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCCCC
Q 007117 358 MVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDS 436 (617)
Q Consensus 358 vvllAGG~GtR-g~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FGl~~ 436 (617)
+|+||||.|+| |. ||.+ +++ .++++++... +.+.+.+ + =+++|.|.. ++..+.+... +
T Consensus 1 ~vILa~G~s~Rmg~--~K~l-~~i-~g~~li~~~l-----~~l~~~~--~-~~Ivvv~~~---~~~~~~~~~~---~--- 59 (160)
T PF12804_consen 1 AVILAAGKSSRMGG--PKAL-LPI-GGKPLIERVL-----EALREAG--V-DDIVVVTGE---EEIYEYLERY---G--- 59 (160)
T ss_dssp EEEEESSSCGGGTS--CGGG-SEE-TTEEHHHHHH-----HHHHHHT--E-SEEEEEEST---HHHHHHHTTT---T---
T ss_pred CEEECCcCcccCCC--Cccc-eeE-CCccHHHHHH-----HHhhccC--C-ceEEEecCh---HHHHHHHhcc---C---
Confidence 58999999999 54 8884 455 7889977654 3333321 1 267787776 3344444211 1
Q ss_pred CcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHc-CceEEEEEeCCcccc-c-c
Q 007117 437 KKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDEL-GVEYIQICTANPRNA-I-G 513 (617)
Q Consensus 437 ~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~-Gi~yi~v~~vDN~l~-~-~ 513 (617)
+ +++.+ |+-+.|...+|.. -+..- +.+++.+..+|-++. . .
T Consensus 60 ----------~-------------~~v~~--------~~~~~G~~~sl~~-----a~~~~~~~~~vlv~~~D~p~~~~~~ 103 (160)
T PF12804_consen 60 ----------I-------------KVVVD--------PEPGQGPLASLLA-----ALSQLPSSEPVLVLPCDQPFLSPEL 103 (160)
T ss_dssp ----------S-------------EEEE---------STSSCSHHHHHHH-----HHHTSTTSSEEEEEETTETTS-HHH
T ss_pred ----------c-------------eEEEe--------ccccCChHHHHHH-----HHHhcccCCCcEEEeCCccccCHHH
Confidence 1 22111 1111233333332 12222 789999999999887 2 3
Q ss_pred cHHHHHHHHHcCCcEEEEEeeccCCccccccceeeHHHHHHhhh
Q 007117 514 NSMFLGFVKSCGADIGFQISEYAKHSEERFNTMLSMNVMKKLTN 557 (617)
Q Consensus 514 DP~flG~~~~~~~d~~~kvV~k~~~~~E~~~h~fs~~fl~~~~~ 557 (617)
-..++..+...+.++..-+.... ..+.+ +|+...+..+..
T Consensus 104 l~~l~~~~~~~~~~i~~~~~~~~--~~~P~--~~~~~~~~~l~~ 143 (160)
T PF12804_consen 104 LRRLLEALEKSPADIVVPVFRGG--RGHPL--IYSRSALPELEA 143 (160)
T ss_dssp HHHHHHHHHHTTTSEEEEEETTE--EEEEE--EEEGGGHHHHHH
T ss_pred HHHHHHHHhccCCcEEEEEECCc--cceeE--EEeHHHHHHHHH
Confidence 34456666667888877555433 34555 667766665543
No 32
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=93.96 E-value=0.11 Score=54.12 Aligned_cols=63 Identities=13% Similarity=0.060 Sum_probs=44.1
Q ss_pred EEEEccCCCCCCC-----CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 007117 358 MVLVVHNSEEGNE-----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 428 (617)
Q Consensus 358 vvllAGG~GtRg~-----~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~ 428 (617)
+|+||||.|||+. ..||-+ +++..+++++|... +++...+ . .=.++|.|+...++.+++++.+
T Consensus 3 ~vILAgG~GtRl~PlS~~~~PK~l-l~l~g~~~li~~~l-----~~l~~~~-~-~~~i~vvt~~~~~~~v~~~l~~ 70 (274)
T cd02509 3 PVILAGGSGTRLWPLSRESYPKQF-LKLFGDKSLLQQTL-----DRLKGLV-P-PDRILVVTNEEYRFLVREQLPE 70 (274)
T ss_pred EEEEcccccccCCcCCCCCCCceE-eEcCCCCcHHHHHH-----HHHhcCC-C-CCcEEEEechHHHHHHHHHHhh
Confidence 6899999999952 349983 45555699988765 4554321 1 1278899998777778888865
No 33
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=93.93 E-value=0.92 Score=49.17 Aligned_cols=71 Identities=4% Similarity=-0.040 Sum_probs=48.0
Q ss_pred CceEEEEEccCCCCCCC----CCCCcccccCCCCc-chHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 007117 354 GKKAMVLVVHNSEEGNE----CDPHSVVSESTANK-SLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 428 (617)
Q Consensus 354 gkvavvllAGG~GtRg~----~~pK~~~i~l~s~k-slf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~ 428 (617)
+++-+|+||||.|||+. .-||.+ +++ .++ ++++... +.+.+. +.. -++|.|. ...+.++++|.+
T Consensus 2 ~~m~avILAaG~GtRl~plT~~~PK~l-lpv-~gk~pli~~~l-----~~l~~~--Gi~-~i~iv~~-~~~~~i~~~~~~ 70 (380)
T PRK05293 2 KEMLAMILAGGQGTRLGKLTKNIAKPA-VPF-GGKYRIIDFTL-----SNCANS--GID-TVGVLTQ-YQPLELNNHIGI 70 (380)
T ss_pred CcEEEEEECCCCCcccchhhcCCccce-eee-CCceeehhHHH-----HHHHhC--CCC-EEEEEec-CCHHHHHHHHhC
Confidence 36788999999999943 239983 344 456 7877755 455442 222 3567775 467889999987
Q ss_pred CCCCCCC
Q 007117 429 NDHFAFD 435 (617)
Q Consensus 429 ~~~FGl~ 435 (617)
...||+.
T Consensus 71 ~~~~~~~ 77 (380)
T PRK05293 71 GSPWDLD 77 (380)
T ss_pred CCccccc
Confidence 7777764
No 34
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=93.87 E-value=0.21 Score=50.41 Aligned_cols=65 Identities=9% Similarity=0.133 Sum_probs=41.6
Q ss_pred ceEEEEEccCCCCC-CCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 007117 355 KKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 428 (617)
Q Consensus 355 kvavvllAGG~GtR-g~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~ 428 (617)
.+++|+||||.|+| |+..||.+ +++ .++++++... +++.+. ..--.++|.|++.......+++++
T Consensus 2 ~~~~iIlAaG~g~R~g~~~~K~l-~~l-~gkpll~~~i-----~~~~~~--~~~~~ivVv~~~~~~~~~~~~~~~ 67 (230)
T PRK13385 2 NYELIFLAAGQGKRMNAPLNKMW-LDL-VGEPIFIHAL-----RPFLAD--NRCSKIIIVTQAQERKHVQDLMKQ 67 (230)
T ss_pred ceEEEEECCeeccccCCCCCcce-eEE-CCeEHHHHHH-----HHHHcC--CCCCEEEEEeChhhHHHHHHHHHh
Confidence 37899999999999 65568983 233 5788876544 344321 111256777777665656666654
No 35
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=93.43 E-value=1.4 Score=48.61 Aligned_cols=140 Identities=10% Similarity=0.137 Sum_probs=75.3
Q ss_pred CceEEEEEccCCCCCCC---CC-CCcccccCCCCc-chHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 007117 354 GKKAMVLVVHNSEEGNE---CD-PHSVVSESTANK-SLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 428 (617)
Q Consensus 354 gkvavvllAGG~GtRg~---~~-pK~~~i~l~s~k-slf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~ 428 (617)
.++.+|+||||.|||+. .. ||.+ +++ .++ ++.+... +.+.+.+ -. -++|.|. ...+.+.++|..
T Consensus 4 ~~~~avILAaG~GtRl~PLT~~~PK~l-lPv-~gk~plI~~~L-----~~l~~~G-i~--~i~iv~~-~~~~~i~~~~~~ 72 (407)
T PRK00844 4 PKVLAIVLAGGEGKRLMPLTADRAKPA-VPF-GGSYRLIDFVL-----SNLVNSG-YL--RIYVLTQ-YKSHSLDRHISQ 72 (407)
T ss_pred CceEEEEECCCCCCccchhhcCCcccc-eee-CCcceEhHHHH-----HHHHHCC-CC--EEEEEec-cCHHHHHHHHHh
Confidence 47889999999999943 33 9983 344 344 7766644 4554422 11 2455565 568889999974
Q ss_pred CCCCCCCCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCc
Q 007117 429 NDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANP 508 (617)
Q Consensus 429 ~~~FGl~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN 508 (617)
. +++..-.+.++.. .|.-... -...|-|.||-+... ++.+....-+++.+.+-|+
T Consensus 73 ~--~~~~~~~~~~~~~--~~~~~~~----------------~~~~~lGta~al~~a-----~~~i~~~~~~~~lv~~gD~ 127 (407)
T PRK00844 73 T--WRLSGLLGNYITP--VPAQQRL----------------GKRWYLGSADAIYQS-----LNLIEDEDPDYVVVFGADH 127 (407)
T ss_pred C--cCccccCCCeEEE--CCcccCC----------------CCCcccCCHHHHHHH-----HHHHHhcCCCEEEEecCCE
Confidence 2 3332111121110 0110000 012255776654322 2234333446778888888
Q ss_pred cccc-ccHHHHHHHHHcCCcEEE
Q 007117 509 RNAI-GNSMFLGFVKSCGADIGF 530 (617)
Q Consensus 509 ~l~~-~DP~flG~~~~~~~d~~~ 530 (617)
+.-. +. -++-+|..+++++..
T Consensus 128 v~~~dl~-~l~~~h~~~~~~~ti 149 (407)
T PRK00844 128 VYRMDPR-QMVDFHIESGAGVTV 149 (407)
T ss_pred EEcCCHH-HHHHHHHhcCCcEEE
Confidence 5432 32 356788888887543
No 36
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=93.29 E-value=1.6 Score=44.76 Aligned_cols=147 Identities=10% Similarity=0.141 Sum_probs=74.5
Q ss_pred EEEEccCCCCCC-C-C--CCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCC
Q 007117 358 MVLVVHNSEEGN-E-C--DPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 433 (617)
Q Consensus 358 vvllAGG~GtRg-~-~--~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FG 433 (617)
+|+||||.|||. . + -||.+ +++ .++++++... +.+.+. .|.-+++......+.+.++|.+...+|
T Consensus 2 avilaaG~gtRl~~~t~~~pK~l-lpv-~g~pii~~~l-----~~l~~~----gi~~i~iv~~~~~~~i~~~~~~~~~~~ 70 (254)
T TIGR02623 2 AVILAGGLGTRISEETHLRPKPM-VEI-GGKPILWHIM-----KIYSHH----GINDFIICCGYKGYVIKEYFANYFLHM 70 (254)
T ss_pred EEEEcCccccccCccccCCCcce-eEE-CCEEHHHHHH-----HHHHHC----CCCEEEEEcCCCHHHHHHHHHhhhhcc
Confidence 478999999994 2 2 39983 333 4677765433 444432 233344444456788889997643332
Q ss_pred CCCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCccccc-
Q 007117 434 FDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAI- 512 (617)
Q Consensus 434 l~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~~- 512 (617)
.+ -++. ++++.+...... .+. ..+-... .-.|.|+||-+.+... .+ +-+++.+.+-|++.-.
T Consensus 71 ~~-~~~~-~~~~~~~~~~~~--~~~-~~~~~~~----~~~~~gt~~al~~~~~-----~i---~~e~flv~~gD~i~~~d 133 (254)
T TIGR02623 71 SD-VTFH-MADNTMEVHHKR--VEP-WRVTLVD----TGESTQTGGRLKRVRE-----YL---DDEAFCFTYGDGVADID 133 (254)
T ss_pred cC-eeEE-eccccccccccc--CCc-cceeeee----cCCcCCcHHHHHHHHH-----hc---CCCeEEEEeCCeEecCC
Confidence 21 1222 233333332111 000 0111110 1246788775543322 12 1245668888885432
Q ss_pred ccHHHHHHHHHcCCcEEEEEe
Q 007117 513 GNSMFLGFVKSCGADIGFQIS 533 (617)
Q Consensus 513 ~DP~flG~~~~~~~d~~~kvV 533 (617)
.. -++-+|...++++...++
T Consensus 134 l~-~~~~~h~~~~~d~tl~~~ 153 (254)
T TIGR02623 134 IK-ALIAFHRKHGKKATVTAV 153 (254)
T ss_pred HH-HHHHHHHHcCCCEEEEEe
Confidence 33 345677788888765444
No 37
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=93.26 E-value=1.9 Score=41.34 Aligned_cols=137 Identities=11% Similarity=0.109 Sum_probs=74.2
Q ss_pred EEEEEccCCCCCCCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCCCC
Q 007117 357 AMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDS 436 (617)
Q Consensus 357 avvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FGl~~ 436 (617)
+.|+||||.|+|.+. +|.+ +++ .++++++... +++.+. + -+++|.|+..... + .. ++.
T Consensus 2 ~~iILAgG~s~Rmg~-~K~l-l~~-~g~~ll~~~i-----~~l~~~---~-~~iivv~~~~~~~----~-~~---~~~-- 59 (181)
T cd02503 2 TGVILAGGKSRRMGG-DKAL-LEL-GGKPLLEHVL-----ERLKPL---V-DEVVISANRDQER----Y-AL---LGV-- 59 (181)
T ss_pred cEEEECCCccccCCC-Ccee-eEE-CCEEHHHHHH-----HHHHhh---c-CEEEEECCCChHH----H-hh---cCC--
Confidence 579999999999433 8873 233 4788877654 333321 1 2567777655433 1 11 121
Q ss_pred CcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCcccccccHH
Q 007117 437 KKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIGNSM 516 (617)
Q Consensus 437 ~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~~~DP~ 516 (617)
.+ +..+ .+ ...| -++++.+|... ..+++.|...|.++. +|-
T Consensus 60 ---~~--------v~~~-------------~~--~~G~--~~si~~~l~~~---------~~~~vlv~~~D~P~i--~~~ 100 (181)
T cd02503 60 ---PV--------IPDE-------------PP--GKGP--LAGILAALRAA---------PADWVLVLACDMPFL--PPE 100 (181)
T ss_pred ---cE--------eeCC-------------CC--CCCC--HHHHHHHHHhc---------CCCeEEEEeCCcCCC--CHH
Confidence 11 1111 00 0011 13677766542 267999999999988 666
Q ss_pred HHHHHHH---cCCcEEEEEeeccCCccccccceeeHHHHHHhhh
Q 007117 517 FLGFVKS---CGADIGFQISEYAKHSEERFNTMLSMNVMKKLTN 557 (617)
Q Consensus 517 flG~~~~---~~~d~~~kvV~k~~~~~E~~~h~fs~~fl~~~~~ 557 (617)
.+-...+ ++.++. ++......+.+--+|+.+++..+..
T Consensus 101 ~i~~l~~~~~~~~~~~---~~~~~g~~~Pl~~~~~~~~~~~l~~ 141 (181)
T cd02503 101 LLERLLAAAEEGADAV---VPKSGGRLQPLHALYHKSLLPALEE 141 (181)
T ss_pred HHHHHHHhhccCCCEE---EEeeCCceeeEEEEEeHhHHHHHHH
Confidence 6655554 344443 3333111222333799888887754
No 38
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=93.19 E-value=0.31 Score=48.84 Aligned_cols=67 Identities=9% Similarity=0.134 Sum_probs=44.4
Q ss_pred EEEEEccCCCCCCC----CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCC
Q 007117 357 AMVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHF 432 (617)
Q Consensus 357 avvllAGG~GtRg~----~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~F 432 (617)
.+|+||||.|||.. ..||.+ +++ .++++++... +.+.+. +.. .++|+|+. ..+.+++++.+...+
T Consensus 2 ~avIlAaG~g~Rl~plt~~~pK~l-~~i-~g~~li~~~l-----~~l~~~--~~~-~i~vv~~~-~~~~~~~~~~~~~~~ 70 (236)
T cd04189 2 KGLILAGGKGTRLRPLTYTRPKQL-IPV-AGKPIIQYAI-----EDLREA--GIE-DIGIVVGP-TGEEIKEALGDGSRF 70 (236)
T ss_pred eEEEECCCccccccccccCCCcee-eEE-CCcchHHHHH-----HHHHHC--CCC-EEEEEcCC-CHHHHHHHhcchhhc
Confidence 47899999999942 349983 333 4678877654 444432 221 46778877 778888888875556
Q ss_pred CC
Q 007117 433 AF 434 (617)
Q Consensus 433 Gl 434 (617)
|+
T Consensus 71 ~~ 72 (236)
T cd04189 71 GV 72 (236)
T ss_pred CC
Confidence 65
No 39
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=93.11 E-value=0.2 Score=53.16 Aligned_cols=86 Identities=12% Similarity=0.041 Sum_probs=55.2
Q ss_pred eEEEEEccCCCCCC---CC--CCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCC
Q 007117 356 KAMVLVVHNSEEGN---EC--DPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDND 430 (617)
Q Consensus 356 vavvllAGG~GtRg---~~--~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~ 430 (617)
..-|+||||.|||+ +- .||=+ +.+.+++|+||-.. .|++.+.. .-.+++.|+..-...+++=|.+-+
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQF-l~L~~~~Sllq~T~-----~R~~~l~~--~~~~~vVtne~~~f~v~eql~e~~ 73 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQF-LKLFGDLSLLQQTV-----KRLAFLGD--IEEPLVVTNEKYRFIVKEQLPEID 73 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccc-eeeCCCCcHHHHHH-----HHHhhcCC--ccCeEEEeCHHHHHHHHHHHhhhh
Confidence 34689999999995 32 39973 56778999988776 45544221 235677899888888888887622
Q ss_pred CCCCCCCcEEEE---ecCCcccccC
Q 007117 431 HFAFDSKKVWFL---EEEKLPIVSR 452 (617)
Q Consensus 431 ~FGl~~~~v~~f---~Q~~lP~~~~ 452 (617)
.=.. .. .++ .-++-||+-.
T Consensus 74 ~~~~--~~-illEP~gRnTApAIA~ 95 (333)
T COG0836 74 IENA--AG-IILEPEGRNTAPAIAL 95 (333)
T ss_pred hccc--cc-eEeccCCCCcHHHHHH
Confidence 1111 12 223 4567888743
No 40
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=93.08 E-value=1.5 Score=43.58 Aligned_cols=60 Identities=12% Similarity=0.080 Sum_probs=37.8
Q ss_pred EEEEccCCCCC-CCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 007117 358 MVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 428 (617)
Q Consensus 358 vvllAGG~GtR-g~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~ 428 (617)
+|+||||.||| +...||.+ +++ .++++++... +.+.+. +. -..+|.|+.. ++.+.+++.+
T Consensus 1 aiIlaaG~g~R~~~~~pK~l-~~v-~gkpli~~~i-----~~l~~~--~i-~~i~iv~~~~-~~~i~~~~~~ 61 (229)
T cd02540 1 AVILAAGKGTRMKSDLPKVL-HPL-AGKPMLEHVL-----DAARAL--GP-DRIVVVVGHG-AEQVKKALAN 61 (229)
T ss_pred CEEEeCCCCccCCCCCChhc-cee-CCccHHHHHH-----HHHHhC--CC-CeEEEEECCC-HHHHHHHhCC
Confidence 47899999999 44459983 334 4678876544 444442 22 2456666655 6777777754
No 41
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=92.96 E-value=1 Score=45.92 Aligned_cols=139 Identities=13% Similarity=0.158 Sum_probs=75.5
Q ss_pred EEEEccCCCCCCC---C-CCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCC
Q 007117 358 MVLVVHNSEEGNE---C-DPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 433 (617)
Q Consensus 358 vvllAGG~GtRg~---~-~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FG 433 (617)
+|+||||.|||.. . .||.+ +++ .++++.+... ..+.+. +.. .++|.++ ...+.+++|+.+...||
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~l-lpv-~~~p~i~~~~-----~~~~~~--gi~-~i~iv~~-~~~~~i~~~~~~~~~~~ 69 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPM-VEI-GGRPILWHIM-----KIYSHY--GHN-DFILCLG-YKGHVIKEYFLNYFLHN 69 (253)
T ss_pred CEEEecCCccccCCccCCCCceE-EEE-CCEEHHHHHH-----HHHHhC--CCc-eEEEECC-CCHHHHHHHHHhhhhhc
Confidence 4789999999942 2 39983 344 4577765433 344332 111 3445555 56788999998755455
Q ss_pred CCCCcEEEEecCCcccccCCCCccccceecc-c---CCCCcc----cccCCCchHH-HHHhhCchhHHHHHcCceEEEEE
Q 007117 434 FDSKKVWFLEEEKLPIVSRSPTEQNKFKILM-K---SPWETL----QAPVGSGGVF-SLLSSHNIIKNLDELGVEYIQIC 504 (617)
Q Consensus 434 l~~~~v~~f~Q~~lP~~~~~~~g~~~gkill-~---~~~~i~----~~P~GnGgv~-~aL~~~g~l~~l~~~Gi~yi~v~ 504 (617)
. ++.+-.|. +++.. . +++.+. ..|.|+||-+ .++. .+ ..+ +++.+.
T Consensus 70 ~---~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~------~~-~~~-~~~lv~ 124 (253)
T cd02524 70 S---DVTIDLGT--------------NRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRR------YL-GDD-ETFMLT 124 (253)
T ss_pred C---ceeEeecc--------------cceeeecccccccceeecccCcccccHHHHHHHHH------hc-CCC-CeEEEE
Confidence 3 23321110 11111 0 011111 2356666543 3331 12 111 789999
Q ss_pred eCCccccc-ccHHHHHHHHHcCCcEEEEEe
Q 007117 505 TANPRNAI-GNSMFLGFVKSCGADIGFQIS 533 (617)
Q Consensus 505 ~vDN~l~~-~DP~flG~~~~~~~d~~~kvV 533 (617)
+-|++.-. +.. ++=++...++++...++
T Consensus 125 ~gD~i~~~dl~~-ll~~h~~~~~~~tl~~~ 153 (253)
T cd02524 125 YGDGVSDVNINA-LIEFHRSHGKLATVTAV 153 (253)
T ss_pred cCCEEECCCHHH-HHHHHHHcCCCEEEEEe
Confidence 99987653 644 56677888888876554
No 42
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=92.80 E-value=0.37 Score=47.87 Aligned_cols=126 Identities=13% Similarity=0.108 Sum_probs=70.4
Q ss_pred EEEEccCCCCCCC----CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCccc-EEEeCCccchHHHHHHHHHCCCC
Q 007117 358 MVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMP-LVLVLPALEMQMLEKLFLDNDHF 432 (617)
Q Consensus 358 vvllAGG~GtRg~----~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip-~~IMTS~~t~~~T~~ff~~~~~F 432 (617)
.|+||||.|||.. ..||.+ +++ .++++++... +.+.+.+ +. ++|.| ....+.+.+++.. .++
T Consensus 2 aiIlaaG~g~Rl~plt~~~pK~l-lpi-~g~~li~~~l-----~~l~~~g----i~~i~iv~-~~~~~~i~~~~~~-~~~ 68 (221)
T cd06422 2 AMILAAGLGTRMRPLTDTRPKPL-VPV-AGKPLIDHAL-----DRLAAAG----IRRIVVNT-HHLADQIEAHLGD-SRF 68 (221)
T ss_pred EEEEcCCCCCccccccCCCCCce-eeE-CCEEHHHHHH-----HHHHHCC----CCEEEEEc-cCCHHHHHHHHhc-ccC
Confidence 4889999999942 238983 333 4678877655 4444422 22 34444 5678888999876 455
Q ss_pred CCCCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCch-HHHHHhhCchhHHHHHcCceEEEEEeCCcccc
Q 007117 433 AFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGG-VFSLLSSHNIIKNLDELGVEYIQICTANPRNA 511 (617)
Q Consensus 433 Gl~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGg-v~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~ 511 (617)
|+ ++.+.. + + ..+-|.|+ ++.++.. + . -+++.|.+-|++.-
T Consensus 69 ~~---~i~~~~---------~-------------~----~~~~g~~~~l~~~~~~------~-~--~~~~lv~~~D~i~~ 110 (221)
T cd06422 69 GL---RITISD---------E-------------P----DELLETGGGIKKALPL------L-G--DEPFLVVNGDILWD 110 (221)
T ss_pred Cc---eEEEec---------C-------------C----CcccccHHHHHHHHHh------c-C--CCCEEEEeCCeeeC
Confidence 64 232211 1 0 02334433 4444431 2 1 16888889998654
Q ss_pred c-ccHHHHHHHH--HcCCcEEEEEeec
Q 007117 512 I-GNSMFLGFVK--SCGADIGFQISEY 535 (617)
Q Consensus 512 ~-~DP~flG~~~--~~~~d~~~kvV~k 535 (617)
. ... ++=.|. ..+++++..+++.
T Consensus 111 ~~~~~-~~~~~~~~~~~~~~~~~~~~~ 136 (221)
T cd06422 111 GDLAP-LLLLHAWRMDALLLLLPLVRN 136 (221)
T ss_pred CCHHH-HHHHHHhccCCCceEEEEEEc
Confidence 2 333 334455 4566666655543
No 43
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=92.70 E-value=0.17 Score=50.91 Aligned_cols=127 Identities=13% Similarity=0.139 Sum_probs=69.0
Q ss_pred EEEEccCCCCCC---CC-CCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCC
Q 007117 358 MVLVVHNSEEGN---EC-DPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 433 (617)
Q Consensus 358 vvllAGG~GtRg---~~-~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FG 433 (617)
.|+||||.|||+ .. .||.+ +++..++++++... +.+.+.+ .. -+++.+.....+...++|.+...++
T Consensus 2 avIla~G~GtRl~plt~~~pK~l-l~i~g~~pli~~~l-----~~l~~~g--~~-~ii~V~~~~~~~~i~~~~~~~~~~~ 72 (248)
T PF00483_consen 2 AVILAGGKGTRLRPLTDTIPKPL-LPIGGKYPLIDYVL-----ENLANAG--IK-EIIVVVNGYKEEQIEEHLGSGYKFG 72 (248)
T ss_dssp EEEEEESCCGGGTTTTTTSSGGG-SEETTEEEHHHHHH-----HHHHHTT--CS-EEEEEEETTTHHHHHHHHTTSGGGT
T ss_pred EEEECCCCCccCchhhhcccccc-ceecCCCcchhhhh-----hhhcccC--Cc-eEEEEEeeccccccccccccccccc
Confidence 367799999994 22 38873 34434448877654 4554422 22 2345555556678999998876566
Q ss_pred CCCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHcC-ceEEEEEeCCccccc
Q 007117 434 FDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELG-VEYIQICTANPRNAI 512 (617)
Q Consensus 434 l~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~G-i~yi~v~~vDN~l~~ 512 (617)
+ +|.+..|. .|.|.|+...... +.+.... -+++.+.+.|++.-.
T Consensus 73 ~---~i~~i~~~---------------------------~~~Gta~al~~a~-----~~i~~~~~~~~~lv~~gD~i~~~ 117 (248)
T PF00483_consen 73 V---KIEYIVQP---------------------------EPLGTAGALLQAL-----DFIEEEDDDEDFLVLNGDIIFDD 117 (248)
T ss_dssp E---EEEEEEES---------------------------SSSCHHHHHHHTH-----HHHTTSEE-SEEEEETTEEEEST
T ss_pred c---cceeeecc---------------------------cccchhHHHHHHH-----HHhhhccccceEEEEeccccccc
Confidence 2 33322221 1115555444332 2232222 246777777775553
Q ss_pred ccHHHHHHHHHcCCcE
Q 007117 513 GNSMFLGFVKSCGADI 528 (617)
Q Consensus 513 ~DP~flG~~~~~~~d~ 528 (617)
--.-++-.|..++.++
T Consensus 118 ~~~~~l~~~~~~~~~~ 133 (248)
T PF00483_consen 118 DLQDMLEFHRESNADG 133 (248)
T ss_dssp THHHHHHHHHHHSSCE
T ss_pred hhhhHHHhhhcccccc
Confidence 1145667777777744
No 44
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=92.60 E-value=0.31 Score=50.42 Aligned_cols=65 Identities=12% Similarity=0.157 Sum_probs=40.4
Q ss_pred CceEEEEEccCCCCC-CCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHH
Q 007117 354 GKKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 427 (617)
Q Consensus 354 gkvavvllAGG~GtR-g~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~ 427 (617)
.++++|+||||.|+| |...||.+ +++ .++++++... +++.+. ..+ =.++|.++....+.....++
T Consensus 23 ~~i~aIILAAG~gsRmg~~~pKql-l~l-~Gkpll~~tl-----~~~~~~-~~i-~~IvVV~~~~~~~~~~~~~~ 88 (252)
T PLN02728 23 KSVSVILLAGGVGKRMGANMPKQY-LPL-LGQPIALYSL-----YTFARM-PEV-KEIVVVCDPSYRDVFEEAVE 88 (252)
T ss_pred CceEEEEEcccccccCCCCCCcce-eEE-CCeEHHHHHH-----HHHHhC-CCC-CeEEEEeCHHHHHHHHHHHH
Confidence 368999999999999 65569983 333 5788876544 444331 111 14556666555555555554
No 45
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=92.58 E-value=0.43 Score=50.42 Aligned_cols=76 Identities=5% Similarity=0.127 Sum_probs=48.1
Q ss_pred eEEEEEccCCCCCCC----CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCC
Q 007117 356 KAMVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDH 431 (617)
Q Consensus 356 vavvllAGG~GtRg~----~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~ 431 (617)
.-+|+||||.|||+. ..||-+ +++ -+|++.+... +.+...+ .. -++|++.....+..+++|.....
T Consensus 4 ~kaIILAgG~GtRL~PlT~~~pK~L-lpv-~gkPmI~~~l-----~~l~~aG--i~-~I~ii~~~~~~~~~~~~l~~g~~ 73 (292)
T PRK15480 4 RKGIILAGGSGTRLYPVTMAVSKQL-LPI-YDKPMIYYPL-----STLMLAG--IR-DILIISTPQDTPRFQQLLGDGSQ 73 (292)
T ss_pred eEEEEECCCcccccCcccCCCCceE-eEE-CCEEHHHHHH-----HHHHHCC--CC-EEEEEecCCchHHHHHHHcCccc
Confidence 567999999999953 238873 333 4678866644 4554422 21 34555555555678889887777
Q ss_pred CCCCCCcEEEEec
Q 007117 432 FAFDSKKVWFLEE 444 (617)
Q Consensus 432 FGl~~~~v~~f~Q 444 (617)
||+ ++.+..|
T Consensus 74 ~g~---~i~y~~q 83 (292)
T PRK15480 74 WGL---NLQYKVQ 83 (292)
T ss_pred cCc---eeEEEEC
Confidence 887 4554444
No 46
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=92.46 E-value=2.5 Score=46.49 Aligned_cols=62 Identities=11% Similarity=0.191 Sum_probs=39.8
Q ss_pred ceEEEEEccCCCCCC-CCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 007117 355 KKAMVLVVHNSEEGN-ECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 428 (617)
Q Consensus 355 kvavvllAGG~GtRg-~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~ 428 (617)
+..+|+||||.|||. ...||.+ +++ -++++++... +.+.+. . -..+|+++. ..+..++++.+
T Consensus 2 ~~~aiIlAaG~GtRl~~~~pK~L-lpi-~gkPli~~~i-----~~l~~~---~-~~i~Ivv~~-~~~~i~~~~~~ 64 (430)
T PRK14359 2 KLSIIILAAGKGTRMKSSLPKVL-HTI-CGKPMLFYIL-----KEAFAI---S-DDVHVVLHH-QKERIKEAVLE 64 (430)
T ss_pred CccEEEEcCCCCccCCCCCCcee-CEE-CCccHHHHHH-----HHHHHc---C-CcEEEEECC-CHHHHHHHHHh
Confidence 356899999999995 4449983 233 5788876654 333331 1 245666764 46777888865
No 47
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=92.42 E-value=1.4 Score=49.00 Aligned_cols=147 Identities=10% Similarity=0.099 Sum_probs=80.2
Q ss_pred ceEEEEEccCCCCCCC----CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCC
Q 007117 355 KKAMVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDND 430 (617)
Q Consensus 355 kvavvllAGG~GtRg~----~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~ 430 (617)
++.+|+||||.|||+. .-||.+ +++..++.+.++.. +.+++.+- . -++|.|+ ...+...++|++..
T Consensus 3 ~~~aIIlA~G~gtRl~PlT~~~PK~l-lpv~g~~plId~~L-----~~l~~~Gi-~--~i~iv~~-~~~~~i~~~l~~~~ 72 (436)
T PLN02241 3 SVAAIILGGGAGTRLFPLTKRRAKPA-VPIGGNYRLIDIPM-----SNCINSGI-N--KIYVLTQ-FNSASLNRHLSRAY 72 (436)
T ss_pred ceEEEEEeCCCCCcchhhhcCCcccc-eEeCCcceEehHHH-----HHHHhCCC-C--EEEEEec-cCHHHHHHHHhccC
Confidence 6788999999999953 239983 44544457877655 45544221 1 2355555 46688899998532
Q ss_pred CCCCCCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCccc
Q 007117 431 HFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRN 510 (617)
Q Consensus 431 ~FGl~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l 510 (617)
.|+.... +.++.+..+... .+.. -...|.|.||-+..... .+++...++-+++.+.+-|++.
T Consensus 73 ~~~~~~~----~~~~~~~i~~~~-----------q~~~-~~~~~lGt~~al~~~~~--~~~~~~~~~~~~~lv~~gD~v~ 134 (436)
T PLN02241 73 NFGNGGN----FGDGFVEVLAAT-----------QTPG-EKGWFQGTADAVRQFLW--LFEDAKNKNVEEVLILSGDHLY 134 (436)
T ss_pred CCCCCcc----cCCCCEEEcCCc-----------ccCC-CCccccCcHHHHHHHHH--HHHhcccCCCCEEEEecCCeEE
Confidence 3443111 011111111000 0000 01258898886654332 2332222235788899999864
Q ss_pred cc-ccHHHHHHHHHcCCcEEE
Q 007117 511 AI-GNSMFLGFVKSCGADIGF 530 (617)
Q Consensus 511 ~~-~DP~flG~~~~~~~d~~~ 530 (617)
-. ... ++-+|.++++++..
T Consensus 135 ~~dl~~-ll~~h~~~~a~~ti 154 (436)
T PLN02241 135 RMDYMD-FVQKHRESGADITI 154 (436)
T ss_pred ccCHHH-HHHHHHHcCCCEEE
Confidence 32 333 46788888898654
No 48
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=92.33 E-value=2.2 Score=41.65 Aligned_cols=127 Identities=17% Similarity=0.290 Sum_probs=71.3
Q ss_pred EEEEccCCCCCCC----CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCC
Q 007117 358 MVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 433 (617)
Q Consensus 358 vvllAGG~GtRg~----~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FG 433 (617)
+|+||||.|||.. ..||.+ +++ .++++++... +.+.+.+ . -.++|.|.. ..+.+.+++.+...+|
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~l-l~v-~g~pli~~~l-----~~l~~~g--~-~~i~vv~~~-~~~~i~~~~~~~~~~~ 69 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPL-LPI-AGKPILEYII-----ERLARAG--I-DEIILVVGY-LGEQIEEYFGDGSKFG 69 (217)
T ss_pred CEEecCCccccccccccCCCccc-cEE-CCeeHHHHHH-----HHHHHCC--C-CEEEEEecc-CHHHHHHHHcChhhcC
Confidence 3789999999932 238983 333 5678877655 4444422 1 245667765 4567788877644344
Q ss_pred CCCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCccccc-
Q 007117 434 FDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAI- 512 (617)
Q Consensus 434 l~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~~- 512 (617)
+ .|.+..| ..|.|.|+.+.+... .+ .-+++.|.+-|++.-.
T Consensus 70 ~---~i~~~~~---------------------------~~~~g~~~al~~~~~-----~~---~~~~~lv~~~D~~~~~~ 111 (217)
T cd04181 70 V---NIEYVVQ---------------------------EEPLGTAGAVRNAED-----FL---GDDDFLVVNGDVLTDLD 111 (217)
T ss_pred c---eEEEEeC---------------------------CCCCccHHHHHHhhh-----hc---CCCCEEEEECCeecCcC
Confidence 3 2222111 023555443332221 12 3467888888886443
Q ss_pred ccHHHHHHHHHcCCcEEEEEee
Q 007117 513 GNSMFLGFVKSCGADIGFQISE 534 (617)
Q Consensus 513 ~DP~flG~~~~~~~d~~~kvV~ 534 (617)
... ++-++..+++++..-+.+
T Consensus 112 ~~~-~~~~~~~~~~~~~~~~~~ 132 (217)
T cd04181 112 LSE-LLRFHREKGADATIAVKE 132 (217)
T ss_pred HHH-HHHHHHhcCCCEEEEEEE
Confidence 444 456777788887655543
No 49
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=92.30 E-value=0.43 Score=50.23 Aligned_cols=74 Identities=5% Similarity=0.106 Sum_probs=47.3
Q ss_pred EEEEccCCCCCCC----CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCC
Q 007117 358 MVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 433 (617)
Q Consensus 358 vvllAGG~GtRg~----~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FG 433 (617)
.|+||||.|||+. ..||.+ +++ -+|++.+... +.+...+ . =.++|.|.....+..+++|.....||
T Consensus 2 aIILAgG~GtRL~plT~~~pK~L-lpv-~gkPmI~~~L-----~~l~~aG--i-~~I~iv~~~~~~~~~~~~lg~g~~~g 71 (286)
T TIGR01207 2 GIILAGGSGTRLYPITRAVSKQL-LPI-YDKPMIYYPL-----STLMLAG--I-RDILIISTPQDTPRFQQLLGDGSQWG 71 (286)
T ss_pred EEEECCCCCccCCcccCCCCcee-eEE-CCEEhHHHHH-----HHHHHCC--C-CEEEEEecCCcHHHHHHHhccccccC
Confidence 4889999999953 239983 333 4568866644 4444322 1 14556676666778888888767788
Q ss_pred CCCCcEEEEec
Q 007117 434 FDSKKVWFLEE 444 (617)
Q Consensus 434 l~~~~v~~f~Q 444 (617)
+ ++.+..|
T Consensus 72 ~---~i~~~~q 79 (286)
T TIGR01207 72 V---NLSYAVQ 79 (286)
T ss_pred c---eEEEEEc
Confidence 7 4555445
No 50
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=92.28 E-value=1.8 Score=48.15 Aligned_cols=139 Identities=12% Similarity=0.087 Sum_probs=75.3
Q ss_pred ceEEEEEccCCCCCCC----CCCCcccccCCCCc-chHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHC
Q 007117 355 KKAMVLVVHNSEEGNE----CDPHSVVSESTANK-SLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN 429 (617)
Q Consensus 355 kvavvllAGG~GtRg~----~~pK~~~i~l~s~k-slf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~ 429 (617)
++.+|+||||.|||+. .-||.+ +++ -++ ++++... +.+.+.+ .. .++|.|+. ..+.++++|.++
T Consensus 3 ~~~AVILAaG~GtRL~PLT~~~PK~L-lpi-~gk~plI~~~L-----~~l~~~G--i~-~vivv~~~-~~~~i~~~l~~~ 71 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPLTKLRAKPA-VPL-AGKYRLIDIPI-----SNCINSG--IN-KIYVLTQF-NSASLNRHISQT 71 (429)
T ss_pred cEEEEEECCCCCCcchhhhcCCccee-eEE-CCeeEEeHHHH-----HHHHHCC--CC-EEEEEecC-CHHHHHHHHhcC
Confidence 6889999999999953 349983 344 355 7877655 4444422 21 45677774 778899999764
Q ss_pred CCCCC-CCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCc
Q 007117 430 DHFAF-DSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANP 508 (617)
Q Consensus 430 ~~FGl-~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN 508 (617)
..|+. ...-+. .+... + ...-...+-|.||-..... +.+....-+++.|.+-|+
T Consensus 72 ~~~~~~~~g~~~--------i~~~~-------~-----~~~~~~~~lGTa~al~~a~-----~~l~~~~~~~~lVl~gD~ 126 (429)
T PRK02862 72 YNFDGFSGGFVE--------VLAAQ-------Q-----TPENPSWFQGTADAVRKYL-----WHFQEWDVDEYLILSGDQ 126 (429)
T ss_pred cCccccCCCEEE--------EeCCc-------c-----cCCCCccccCcHHHHHHHH-----HHHHhcCCCEEEEecCCE
Confidence 22221 001011 01000 0 0000011257776554332 223333346788888888
Q ss_pred cccc-ccHHHHHHHHHcCCcEEE
Q 007117 509 RNAI-GNSMFLGFVKSCGADIGF 530 (617)
Q Consensus 509 ~l~~-~DP~flG~~~~~~~d~~~ 530 (617)
+.-. .. .++-+|...+++++.
T Consensus 127 l~~~dl~-~ll~~h~~~~a~~tl 148 (429)
T PRK02862 127 LYRMDYR-LFVQHHRETGADITL 148 (429)
T ss_pred EEeCCHH-HHHHHHHHcCCCEEE
Confidence 4432 33 356778888887644
No 51
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=92.03 E-value=2.5 Score=46.96 Aligned_cols=61 Identities=7% Similarity=0.087 Sum_probs=37.6
Q ss_pred ceEEEEEccCCCCCCC-CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHH
Q 007117 355 KKAMVLVVHNSEEGNE-CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLF 426 (617)
Q Consensus 355 kvavvllAGG~GtRg~-~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff 426 (617)
.+++|+||||.|||.. ..||.+ +++ .++++++... +.+.+.+ .. .++|.|+.. .+...++|
T Consensus 5 ~~~aiILAaG~gtR~~~~~pK~l-~~i-~gkpli~~~l-----~~l~~~~--~~-~iivv~~~~-~~~i~~~~ 66 (456)
T PRK14356 5 TTGALILAAGKGTRMHSDKPKVL-QTL-LGEPMLRFVY-----RALRPLF--GD-NVWTVVGHR-ADMVRAAF 66 (456)
T ss_pred ceeEEEEcCCCCccCCCCCCcee-ccc-CCCcHHHHHH-----HHHHhcC--CC-cEEEEECCC-HHHHHHhc
Confidence 5788999999999944 459983 333 5789977755 3443321 11 355666643 34444544
No 52
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=91.78 E-value=2 Score=42.65 Aligned_cols=141 Identities=13% Similarity=0.166 Sum_probs=80.3
Q ss_pred ceEEEEEccCCCCCCCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCC
Q 007117 355 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAF 434 (617)
Q Consensus 355 kvavvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FGl 434 (617)
....|+||||+|+|- ..|++ +.+ .++++++... ++|.. .+. ..+|... .+.+. |. .||
T Consensus 4 ~~~~vILAGG~srRm--~dK~l-~~~-~g~~lie~v~-----~~L~~---~~~-~vvi~~~-~~~~~---~~----~~g- 61 (192)
T COG0746 4 PMTGVILAGGKSRRM--RDKAL-LPL-NGRPLIEHVI-----DRLRP---QVD-VVVISAN-RNQGR---YA----EFG- 61 (192)
T ss_pred CceEEEecCCccccc--ccccc-cee-CCeEHHHHHH-----HHhcc---cCC-EEEEeCC-Cchhh---hh----ccC-
Confidence 567899999999998 77773 233 5689988766 44432 333 4555433 33331 22 234
Q ss_pred CCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCccccccc
Q 007117 435 DSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIGN 514 (617)
Q Consensus 435 ~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~~~D 514 (617)
+|.+.+. . ++. .|= +|+|.+|..- +-+|+.|..+|.+.+ .
T Consensus 62 ------------~~vv~D~--~----------~~~---GPL--~Gi~~al~~~---------~~~~~~v~~~D~P~i--~ 101 (192)
T COG0746 62 ------------LPVVPDE--L----------PGF---GPL--AGILAALRHF---------GTEWVLVLPCDMPFI--P 101 (192)
T ss_pred ------------CceeecC--C----------CCC---CCH--HHHHHHHHhC---------CCCeEEEEecCCCCC--C
Confidence 3444333 0 010 222 2777777653 478999999999999 5
Q ss_pred HHHHHHHHHcCCcEEEEEeeccCCc-cccccceeeHHHHHHhhh
Q 007117 515 SMFLGFVKSCGADIGFQISEYAKHS-EERFNTMLSMNVMKKLTN 557 (617)
Q Consensus 515 P~flG~~~~~~~d~~~kvV~k~~~~-~E~~~h~fs~~fl~~~~~ 557 (617)
|-++=+..+....-...++.+..+. .|...-+++.+.+..+..
T Consensus 102 ~~lv~~l~~~~~~~~~~~~~~~~~g~~~Pl~aly~~~l~~~l~~ 145 (192)
T COG0746 102 PELVERLLSAFKQTGAAIVPAHDDGRLEPLFALYHRALLPALEE 145 (192)
T ss_pred HHHHHHHHHhhcccCCcEEEeCCCCceeeEEEEehHHHHHHHHH
Confidence 5555555544332224455444221 245555567777666544
No 53
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=91.38 E-value=0.75 Score=46.39 Aligned_cols=67 Identities=6% Similarity=0.128 Sum_probs=43.8
Q ss_pred EEEEccCCCCCCC----CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCC
Q 007117 358 MVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 433 (617)
Q Consensus 358 vvllAGG~GtRg~----~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FG 433 (617)
+|+||||.|||.. .-||.+ +++. ++++.+... +.+.+.+ . =.++|.|+....+...++|.....+|
T Consensus 3 ~iIlAaG~gtRl~plt~~~pK~l-lpv~-~~pli~~~l-----~~l~~~g--i-~~i~vv~~~~~~~~~~~~l~~~~~~~ 72 (240)
T cd02538 3 GIILAGGSGTRLYPLTKVVSKQL-LPVY-DKPMIYYPL-----STLMLAG--I-REILIISTPEDLPLFKELLGDGSDLG 72 (240)
T ss_pred EEEEcCcCcccCCccccCCCcee-eEEC-CEEhHHHHH-----HHHHHCC--C-CEEEEEeCcchHHHHHHHHhcccccC
Confidence 6899999999942 239983 3443 788877654 4444322 2 14667777666678888888765666
Q ss_pred C
Q 007117 434 F 434 (617)
Q Consensus 434 l 434 (617)
+
T Consensus 73 ~ 73 (240)
T cd02538 73 I 73 (240)
T ss_pred c
Confidence 4
No 54
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=91.36 E-value=2.5 Score=42.02 Aligned_cols=130 Identities=11% Similarity=0.137 Sum_probs=72.6
Q ss_pred EEEEccCCCCCCC----CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCC
Q 007117 358 MVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 433 (617)
Q Consensus 358 vvllAGG~GtRg~----~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FG 433 (617)
+|+||||.|+|.. ..||.+ +++ .++++++... +.+.+. +. =.++|.++....+.+++++++.. ..
T Consensus 3 aVILAgG~g~R~~plt~~~pK~L-lpv-~g~pli~~~l-----~~l~~~--g~-~~iivv~~~~~~~~i~~~l~~~~-~~ 71 (214)
T cd04198 3 AVILAGGGGSRLYPLTDNIPKAL-LPV-ANKPMIWYPL-----DWLEKA--GF-EDVIVVVPEEEQAEISTYLRSFP-LN 71 (214)
T ss_pred EEEEeCCCCCcCCccccCCCccc-CEE-CCeeHHHHHH-----HHHHHC--CC-CeEEEEECHHHHHHHHHHHHhcc-cc
Confidence 4679999999942 349983 233 4678877654 444442 11 14567777655567888887532 00
Q ss_pred CCCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCccccc-
Q 007117 434 FDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAI- 512 (617)
Q Consensus 434 l~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~~- 512 (617)
.... ..+.... ...+.|.|+........ + -+.+.+.+-|.+...
T Consensus 72 ~~~~----------------------~~~~~~~----~~~~~gt~~al~~~~~~-----i----~~d~lv~~~D~i~~~~ 116 (214)
T cd04198 72 LKQK----------------------LDEVTIV----LDEDMGTADSLRHIRKK-----I----KKDFLVLSCDLITDLP 116 (214)
T ss_pred cCcc----------------------eeEEEec----CCCCcChHHHHHHHHhh-----c----CCCEEEEeCccccccC
Confidence 0000 0111110 13467888877766552 1 234666666754332
Q ss_pred ccHHHHHHHHHcCCcEEEEEee
Q 007117 513 GNSMFLGFVKSCGADIGFQISE 534 (617)
Q Consensus 513 ~DP~flG~~~~~~~d~~~kvV~ 534 (617)
... ++-.+...++.++.-+.+
T Consensus 117 l~~-~l~~h~~~~~~~t~~~~~ 137 (214)
T cd04198 117 LIE-LVDLHRSHDASLTVLLYP 137 (214)
T ss_pred HHH-HHHHHhccCCcEEEEEec
Confidence 444 456777788887765444
No 55
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=91.16 E-value=0.5 Score=46.40 Aligned_cols=61 Identities=7% Similarity=0.045 Sum_probs=39.8
Q ss_pred EEEEEccCCCCCCCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 007117 357 AMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 428 (617)
Q Consensus 357 avvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~ 428 (617)
..++||||.|||.+..+|.+ +++ .++++++... +.+... .. =.++|.||. +++.|+.++++
T Consensus 2 ~aIILAgG~gsRmg~~~K~L-l~i-~GkplI~~vi-----~~l~~~--~i-~~I~Vv~~~-~~~~~~~~l~~ 62 (183)
T TIGR00454 2 DALIMAGGKGTRLGGVEKPL-IEV-CGRCLIDHVL-----SPLLKS--KV-NNIIIATSP-HTPKTEEYINS 62 (183)
T ss_pred eEEEECCccCccCCCCCceE-eEE-CCEEHHHHHH-----HHHHhC--CC-CEEEEEeCC-CHHHHHHHHhh
Confidence 46899999999954478873 233 4788877755 344331 11 246777776 56678888864
No 56
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=91.09 E-value=4.1 Score=40.84 Aligned_cols=60 Identities=13% Similarity=0.164 Sum_probs=37.1
Q ss_pred EEEEccCCCCCCC----CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 007117 358 MVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 428 (617)
Q Consensus 358 vvllAGG~GtRg~----~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~ 428 (617)
+|+||||.|||.. ..||.+ +++ .++++++... +.+...+ . -..+|.|+. .++.+++++.+
T Consensus 3 ~iIlAaG~g~R~~~lt~~~pK~l-lpv-~g~pli~~~l-----~~l~~~g--~-~~v~iv~~~-~~~~~~~~l~~ 66 (233)
T cd06425 3 ALILVGGYGTRLRPLTLTVPKPL-VEF-CNKPMIEHQI-----EALAKAG--V-KEIILAVNY-RPEDMVPFLKE 66 (233)
T ss_pred EEEecCCCccccCccccCCCCcc-CeE-CCcchHHHHH-----HHHHHCC--C-cEEEEEeee-CHHHHHHHHhc
Confidence 5889999999942 249983 334 4567765544 4444322 1 135666664 55678888874
No 57
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=91.05 E-value=0.63 Score=46.00 Aligned_cols=65 Identities=15% Similarity=0.239 Sum_probs=39.0
Q ss_pred EEEEccCCCCCCC----CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCC
Q 007117 358 MVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 433 (617)
Q Consensus 358 vvllAGG~GtRg~----~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FG 433 (617)
+|+||||.|+|.. ..||.+ +++ .++++++... +.+... +.. .++|.|+. ..+.+++++.....+|
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~l-l~~-~g~pli~~~l-----~~l~~~--~~~-~iivv~~~-~~~~i~~~~~~~~~~~ 69 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPM-LKV-GGKPILETII-----DRFIAQ--GFR-NFYISVNY-LAEMIEDYFGDGSKFG 69 (220)
T ss_pred CEEecCCCccccCcccCCCCCcc-CeE-CCcchHHHHH-----HHHHHC--CCc-EEEEECcc-CHHHHHHHHCCccccC
Confidence 5899999999942 349983 334 4677766654 444442 221 34566664 4566777776543334
No 58
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=90.91 E-value=0.81 Score=49.14 Aligned_cols=67 Identities=9% Similarity=0.183 Sum_probs=45.7
Q ss_pred EEEEccCCCCCCC----CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCC
Q 007117 358 MVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 433 (617)
Q Consensus 358 vvllAGG~GtRg~----~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FG 433 (617)
+|+||||.|||.. ..||.+ +++ .++++++... +.+.+. +. -.++|+|+....+..+++|.+...||
T Consensus 2 aiIlAaG~gtRl~plt~~~pK~l-~pv-~g~pli~~~l-----~~l~~~--gi-~~i~vv~~~~~~~~i~~~~~~~~~~~ 71 (353)
T TIGR01208 2 ALILAAGKGTRLRPLTFTRPKQL-IPV-ANKPILQYAI-----EDLAEA--GI-TDIGIVVGPVTGEEIKEIVGEGERFG 71 (353)
T ss_pred EEEECCcCcCccCccccCCCccc-cEE-CCEeHHHHHH-----HHHHHC--CC-CEEEEEeCCCCHHHHHHHHhcccccC
Confidence 5889999999942 339983 333 4678877655 444442 11 25678888878889999998766666
Q ss_pred C
Q 007117 434 F 434 (617)
Q Consensus 434 l 434 (617)
+
T Consensus 72 ~ 72 (353)
T TIGR01208 72 A 72 (353)
T ss_pred c
Confidence 5
No 59
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=90.84 E-value=4.3 Score=40.91 Aligned_cols=59 Identities=10% Similarity=0.067 Sum_probs=36.9
Q ss_pred ceEEEEEccCCCCCCCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 007117 355 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 428 (617)
Q Consensus 355 kvavvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~ 428 (617)
+++++++|||.++|.. +|.+ +++ .++++++... +.+.+. +. -.++|-|. ++.+.+++.+
T Consensus 2 ~~~~iIlA~g~S~R~~--~K~L-l~i-~Gkpll~~~l-----~~l~~~--~i-~~ivvv~~---~~~i~~~~~~ 60 (245)
T PRK05450 2 KFLIIIPARYASTRLP--GKPL-ADI-GGKPMIVRVY-----ERASKA--GA-DRVVVATD---DERIADAVEA 60 (245)
T ss_pred ceEEEEecCCCCCCCC--CCcc-ccc-CCcCHHHHHH-----HHHHhc--CC-CeEEEECC---cHHHHHHHHH
Confidence 5789999999999952 5873 233 5789977765 344332 11 13345443 4677777754
No 60
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=90.78 E-value=0.68 Score=50.30 Aligned_cols=76 Identities=13% Similarity=0.198 Sum_probs=48.7
Q ss_pred EEEEEccCCCCCCC---CC-CCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCC
Q 007117 357 AMVLVVHNSEEGNE---CD-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHF 432 (617)
Q Consensus 357 avvllAGG~GtRg~---~~-pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~F 432 (617)
-.|+||||.|||+. .. ||-+ +++ -+|.+.+.+. +.|.+.+ +-=++++-....+.++++|.....+
T Consensus 3 kavILagG~GtRLrPlT~~~PKPl-lpI-~gkPii~~~l-----~~L~~~G----v~eivi~~~y~~~~i~~~~~d~~~~ 71 (358)
T COG1208 3 KAVILAGGYGTRLRPLTDDRPKPL-LPI-AGKPLIEYVL-----EALAAAG----VEEIVLVVGYLGEQIEEYFGDGEGL 71 (358)
T ss_pred eEEEEeCCccccccccccCCCccc-cee-CCccHHHHHH-----HHHHHCC----CcEEEEEeccchHHHHHHHhccccc
Confidence 46889999999952 23 9973 344 3888877665 4454422 3334455666778899999987666
Q ss_pred CCCCCcEEEEecCC
Q 007117 433 AFDSKKVWFLEEEK 446 (617)
Q Consensus 433 Gl~~~~v~~f~Q~~ 446 (617)
|+ +|.+..|..
T Consensus 72 ~~---~I~y~~e~~ 82 (358)
T COG1208 72 GV---RITYVVEKE 82 (358)
T ss_pred CC---ceEEEecCC
Confidence 65 555444433
No 61
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=90.72 E-value=0.64 Score=48.45 Aligned_cols=157 Identities=11% Similarity=0.158 Sum_probs=82.3
Q ss_pred EEEEccCCCCCCC----CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCC
Q 007117 358 MVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 433 (617)
Q Consensus 358 vvllAGG~GtRg~----~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FG 433 (617)
-|+||||+|||+. ..||-+ +++ -.|...+.- + ++|...+- . -++|.+++.+-...++++-.-..||
T Consensus 3 giILAgG~GTRL~PlT~~~~KqL-lpV-~~KPmi~y~--l---~~L~~aGI-~--dI~II~~~~~~~~~~~llGdgs~~g 72 (286)
T COG1209 3 GVILAGGSGTRLRPLTRVVPKQL-LPV-YDKPMIYYP--L---ETLMLAGI-R--DILIVVGPEDKPTFKELLGDGSDFG 72 (286)
T ss_pred cEEecCcCccccccccccCCccc-cee-cCcchhHhH--H---HHHHHcCC-c--eEEEEecCCchhhhhhhhcCccccC
Confidence 3789999999952 237862 233 456664332 2 44443221 1 3567777777788888888889999
Q ss_pred CCCCcEEEEecCCcccccCCCCccccceeccc-CCCCcccccCCCchHHHHHhhCchhHHHHHcC-ceEEEEEeCCcccc
Q 007117 434 FDSKKVWFLEEEKLPIVSRSPTEQNKFKILMK-SPWETLQAPVGSGGVFSLLSSHNIIKNLDELG-VEYIQICTANPRNA 511 (617)
Q Consensus 434 l~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~-~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~G-i~yi~v~~vDN~l~ 511 (617)
+ ++++-.|..===+...- ..|+=.+. ++.-+. -|-+ +|.. --+..+.++.+++ =-.+..+.|+
T Consensus 73 v---~itY~~Q~~p~GlA~Av---~~a~~fv~~~~f~l~---LGDN-i~~~-~l~~~~~~~~~~~~ga~i~~~~V~---- 137 (286)
T COG1209 73 V---DITYAVQPEPDGLAHAV---LIAEDFVGDDDFVLY---LGDN-IFQD-GLSELLEHFAEEGSGATILLYEVD---- 137 (286)
T ss_pred c---ceEEEecCCCCcHHHHH---HHHHhhcCCCceEEE---ecCc-eecc-ChHHHHHHHhccCCCcEEEEEEcC----
Confidence 8 78888887532221000 00011111 111111 1111 1111 1122444455432 2367788877
Q ss_pred cccHHHHHHHHHcCCcEEEEEeeccCCccc
Q 007117 512 IGNSMFLGFVKSCGADIGFQISEYAKHSEE 541 (617)
Q Consensus 512 ~~DP~flG~~~~~~~d~~~kvV~k~~~~~E 541 (617)
||.=.|++.-.+-.-...+++|-+.|..
T Consensus 138 --dP~rfGV~e~d~~~~v~~l~EKP~~P~S 165 (286)
T COG1209 138 --DPSRYGVVEFDEDGKVIGLEEKPKEPKS 165 (286)
T ss_pred --CcccceEEEEcCCCcEEEeEECCCCCCC
Confidence 5655777775522256666777644444
No 62
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=90.55 E-value=0.56 Score=45.79 Aligned_cols=61 Identities=7% Similarity=0.022 Sum_probs=36.7
Q ss_pred EEEEEccCCCCCCCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHC
Q 007117 357 AMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN 429 (617)
Q Consensus 357 avvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~ 429 (617)
.+|+||||+|||.+..-|-+ +++ .+|.+...-. +.+.+ .+ =-.++-||+.| ..|+.|+++-
T Consensus 2 ~~iiMAGGrGtRmg~~EKPl-leV-~GkpLI~~v~-----~al~~---~~-d~i~v~isp~t-p~t~~~~~~~ 62 (177)
T COG2266 2 MAIIMAGGRGTRMGRPEKPL-LEV-CGKPLIDRVL-----EALRK---IV-DEIIVAISPHT-PKTKEYLESV 62 (177)
T ss_pred ceEEecCCcccccCCCcCcc-hhh-CCccHHHHHH-----HHHHh---hc-CcEEEEeCCCC-HhHHHHHHhc
Confidence 57899999999943344431 222 5676644333 22222 11 14677788655 7789999874
No 63
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=90.32 E-value=0.79 Score=45.01 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=37.2
Q ss_pred EEEEccCCCCC-CC---CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHC
Q 007117 358 MVLVVHNSEEG-NE---CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN 429 (617)
Q Consensus 358 vvllAGG~GtR-g~---~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~ 429 (617)
+|+||||.|+| +. ..||.+ +++ .++++++... +.+.+. +.. .++|.|+ ...+.+++++...
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~l-l~i-~g~pli~~~l-----~~l~~~--g~~-~v~vv~~-~~~~~i~~~~~~~ 65 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPL-APV-AGRPFLEYLL-----EYLARQ--GIS-RIVLSVG-YLAEQIEEYFGDG 65 (223)
T ss_pred CEEecCCcccccCcccCCCCccc-cEE-CCcchHHHHH-----HHHHHC--CCC-EEEEEcc-cCHHHHHHHHcCc
Confidence 47899999999 32 249983 333 3678866644 344332 211 3556665 4567788888753
No 64
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=90.04 E-value=3.8 Score=43.91 Aligned_cols=137 Identities=13% Similarity=0.190 Sum_probs=80.8
Q ss_pred ceEEEEEccCCCCCC----CCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHC-
Q 007117 355 KKAMVLVVHNSEEGN----ECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN- 429 (617)
Q Consensus 355 kvavvllAGG~GtRg----~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~- 429 (617)
.|+.++|.||-|||+ ..-||.+ +++. ++.+...|. +.++..+ ---+|+.|+...-+-.+.+.+..
T Consensus 9 ~vkaiILvGG~GTRLrPLT~t~pKPl-Vpfg-n~pmI~hqi-----eal~nsG---i~~I~la~~y~s~sl~~~~~k~y~ 78 (371)
T KOG1322|consen 9 SVKAIILVGGYGTRLRPLTLTRPKPL-VPFG-NKPMILHQI-----EALINSG---ITKIVLATQYNSESLNRHLSKAYG 78 (371)
T ss_pred ceeEEEEecCCCceeeceeccCCCcc-cccC-cchhhHHHH-----HHHHhCC---CcEEEEEEecCcHHHHHHHHHHhh
Confidence 688999999999995 2348873 4555 777766665 5555422 22567788876655666666654
Q ss_pred CCCCCCCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCcc
Q 007117 430 DHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPR 509 (617)
Q Consensus 430 ~~FGl~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~ 509 (617)
..||. .|. |.|.+- |-|--|-..|-++ .|...... -++|.+-|-+
T Consensus 79 ~~lgV---ei~-~s~ete--------------------------plgtaGpl~laR~--~L~~~~~~---~ffVLnsDvi 123 (371)
T KOG1322|consen 79 KELGV---EIL-ASTETE--------------------------PLGTAGPLALARD--FLWVFEDA---PFFVLNSDVI 123 (371)
T ss_pred hccce---EEE-EEeccC--------------------------CCcccchHHHHHH--HhhhcCCC---cEEEecCCee
Confidence 34552 222 222111 5565565555443 22222211 4566665543
Q ss_pred cccccHHHHHHHHHcCCcEEEEEeecc
Q 007117 510 NAIGNSMFLGFVKSCGADIGFQISEYA 536 (617)
Q Consensus 510 l~~~DP~flG~~~~~~~d~~~kvV~k~ 536 (617)
--.-=--|+-+|..+|+|...-|.+-.
T Consensus 124 ~~~p~~~~vqfH~~~gae~TI~~t~vd 150 (371)
T KOG1322|consen 124 CRMPYKEMVQFHRAHGAEITIVVTKVD 150 (371)
T ss_pred ecCCHHHHHHHHHhcCCceEEEEEecc
Confidence 322224589999999999987765544
No 65
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=89.97 E-value=7.8 Score=38.87 Aligned_cols=60 Identities=12% Similarity=0.077 Sum_probs=36.8
Q ss_pred ceEEEEEccCCCCCCCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 007117 355 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 428 (617)
Q Consensus 355 kvavvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~ 428 (617)
++.++++|||.|+|.. +|.+ +++ .++++++... +.+.+.. ++. -.+|-|. ++.+.+++.+
T Consensus 1 ~~~~iIlA~g~s~R~~--~K~l-~~i-~gkpll~~~l-----~~l~~~~-~i~-~ivvv~~---~~~i~~~~~~ 60 (239)
T cd02517 1 KVIVVIPARYASSRLP--GKPL-ADI-AGKPMIQHVY-----ERAKKAK-GLD-EVVVATD---DERIADAVES 60 (239)
T ss_pred CEEEEEecCCCCCCCC--CCCC-ccc-CCcCHHHHHH-----HHHHhCC-CCC-EEEEECC---cHHHHHHHHH
Confidence 4678999999999953 5873 233 5799977765 4444320 111 2344342 4778888764
No 66
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=89.65 E-value=5.8 Score=43.22 Aligned_cols=143 Identities=15% Similarity=0.146 Sum_probs=76.1
Q ss_pred ceEEEEEccCCCCCCCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCC
Q 007117 355 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAF 434 (617)
Q Consensus 355 kvavvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FGl 434 (617)
++++|+||||+|+|.+..+|.+ +++ .++++++... +.+.. .+ -+++|.++.. ++....++ .+
T Consensus 5 ~i~~VILAgG~s~Rmgg~~K~l-l~i-~Gkpll~~~i-----~~l~~---~~-~~iivvv~~~-~~~~~~~~-----~~- 66 (366)
T PRK14489 5 QIAGVILAGGLSRRMNGRDKAL-ILL-GGKPLIERVV-----DRLRP---QF-ARIHLNINRD-PARYQDLF-----PG- 66 (366)
T ss_pred CceEEEEcCCcccCCCCCCCce-eEE-CCeeHHHHHH-----HHHHh---hC-CEEEEEcCCC-HHHHHhhc-----cC-
Confidence 6889999999999943468873 233 4788876654 33322 11 1345545532 22222211 01
Q ss_pred CCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCccccccc
Q 007117 435 DSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIGN 514 (617)
Q Consensus 435 ~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~~~D 514 (617)
++++..... | + ..| -+|++.+|.. -+.+++.|...|-+++ +
T Consensus 67 ------------~~~i~d~~~----g-------~---~G~--~~si~~gl~~---------~~~~~vlv~~~D~P~i--~ 107 (366)
T PRK14489 67 ------------LPVYPDILP----G-------F---QGP--LSGILAGLEH---------ADSEYLFVVACDTPFL--P 107 (366)
T ss_pred ------------CcEEecCCC----C-------C---CCh--HHHHHHHHHh---------cCCCcEEEeeCCcCCC--C
Confidence 111111100 0 0 011 1456666653 2467899999999888 5
Q ss_pred HHHHHHHHH----cCCcEEEEEeeccCCccccccceeeHHHHHHhhh
Q 007117 515 SMFLGFVKS----CGADIGFQISEYAKHSEERFNTMLSMNVMKKLTN 557 (617)
Q Consensus 515 P~flG~~~~----~~~d~~~kvV~k~~~~~E~~~h~fs~~fl~~~~~ 557 (617)
|-.+-.... .++++.. ++.....+.+--+|+.+++..+..
T Consensus 108 ~~~i~~L~~~~~~~~~~~v~---~~~g~~g~Pl~aiy~~~~~~~l~~ 151 (366)
T PRK14489 108 ENLVKRLSKALAIEGADIAV---PHDGERAHPLFALYHRSCLPALRR 151 (366)
T ss_pred HHHHHHHHHHhhccCCeEEE---EecCCCceeeEEEEcHHHHHHHHH
Confidence 555555544 4555432 333223455555788888877754
No 67
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=89.01 E-value=0.95 Score=51.14 Aligned_cols=85 Identities=9% Similarity=0.106 Sum_probs=53.7
Q ss_pred ceEEEEEccCCCCCC---CC--CCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHC
Q 007117 355 KKAMVLVVHNSEEGN---EC--DPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN 429 (617)
Q Consensus 355 kvavvllAGG~GtRg---~~--~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~ 429 (617)
+.-.|+||||.|||+ .. .||-+ +++..++|++|... +++.+.+ +.=++ |.|+......+++-+.+.
T Consensus 5 ~~~~vIlaGG~GtRlwPlS~~~~PKq~-l~l~~~~sllq~t~-----~r~~~~~--~~~~i-ivt~~~~~~~v~~ql~~~ 75 (478)
T PRK15460 5 KLYPVVMAGGSGSRLWPLSRVLYPKQF-LCLKGDLTMLQTTI-----CRLNGVE--CESPV-VICNEQHRFIVAEQLRQL 75 (478)
T ss_pred ceEEEEECCCCccccccCCCCCCCcce-eECCCCCCHHHHHH-----HHHHhCC--CCCcE-EEeCHHHHHHHHHHHHhc
Confidence 457799999999994 22 28984 45556789988755 4554432 22245 668888888888888764
Q ss_pred CCCCCCCCcEEE--EecCCccccc
Q 007117 430 DHFAFDSKKVWF--LEEEKLPIVS 451 (617)
Q Consensus 430 ~~FGl~~~~v~~--f~Q~~lP~~~ 451 (617)
.. .+.++.+ ..=++-||+.
T Consensus 76 ~~---~~~~ii~EP~~rnTApaia 96 (478)
T PRK15460 76 NK---LTENIILEPAGRNTAPAIA 96 (478)
T ss_pred CC---ccccEEecCCCCChHHHHH
Confidence 32 1234332 2345777764
No 68
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=88.91 E-value=1.3 Score=47.03 Aligned_cols=62 Identities=18% Similarity=0.133 Sum_probs=40.6
Q ss_pred eEEEEEccCCCCCCC--C-C-CCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 007117 356 KAMVLVVHNSEEGNE--C-D-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 428 (617)
Q Consensus 356 vavvllAGG~GtRg~--~-~-pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~ 428 (617)
.-+|+||||.|||+. + . ||-+ +++ -++++.+... +++...+ .. -++|.|+. ..+...+||..
T Consensus 4 mkavILAaG~GTRL~PlT~~~PKpL-vpV-~gkPiI~~vl-----~~l~~~G--i~-~ivivv~~-~~~~i~~~~~~ 69 (297)
T TIGR01105 4 LKAVIPVAGLGMHMLPATKAIPKEM-LPI-VDKPMIQYIV-----DEIVAAG--IK-EIVLVTHA-SKNAVENHFDT 69 (297)
T ss_pred eEEEEECCCCCcccCcccCCCCcee-eEE-CCEEHHHHHH-----HHHHHCC--CC-EEEEEecC-ChHHHHHHHhc
Confidence 567999999999953 2 3 9973 233 4688866654 4554422 21 35666765 67788999864
No 69
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=88.46 E-value=0.96 Score=43.04 Aligned_cols=51 Identities=12% Similarity=0.022 Sum_probs=32.0
Q ss_pred eEEEEEccCCCCCCCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCcc
Q 007117 356 KAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPAL 417 (617)
Q Consensus 356 vavvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~ 417 (617)
+++|+||||.|+|.+. +|.+ +++ .++++++... +++.+. ++ -.++|.|+..
T Consensus 1 ~~~vIlAgG~s~R~g~-~K~l-~~~-~g~~li~~~i-----~~l~~~--~~-~~i~vv~~~~ 51 (186)
T cd04182 1 IAAIILAAGRSSRMGG-NKLL-LPL-DGKPLLRHAL-----DAALAA--GL-SRVIVVLGAE 51 (186)
T ss_pred CeEEEECCCCCCCCCC-Ccee-Cee-CCeeHHHHHH-----HHHHhC--CC-CcEEEECCCc
Confidence 4689999999999433 8873 233 5789877655 444331 11 2566666653
No 70
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=87.71 E-value=16 Score=35.96 Aligned_cols=131 Identities=14% Similarity=0.164 Sum_probs=67.7
Q ss_pred ceEEEEEccCCCCCCCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCC
Q 007117 355 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAF 434 (617)
Q Consensus 355 kvavvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FGl 434 (617)
++++|++|||.|+|.. .|.+ .++ .++++++... +.+.+.+ ... .++|-| +++.+.+++.++ |.
T Consensus 1 ~~~~iIlA~G~s~R~~--~K~l-~~l-~Gkpll~~~l-----~~l~~~~-~~~-~IvV~~---~~~~i~~~~~~~---~~ 63 (223)
T cd02513 1 KILAIIPARGGSKGIP--GKNI-RPL-GGKPLIAWTI-----EAALESK-LFD-RVVVST---DDEEIAEVARKY---GA 63 (223)
T ss_pred CeEEEEecCCCCCCCC--Cccc-chh-CCccHHHHHH-----HHHHhCC-CCC-EEEEEC---CcHHHHHHHHHh---CC
Confidence 4789999999999952 3652 222 5788877654 3433311 111 234433 346666666542 32
Q ss_pred CCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCc-hHHHHHhhCchhHHHHHc--CceEEEEEeCCcccc
Q 007117 435 DSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSG-GVFSLLSSHNIIKNLDEL--GVEYIQICTANPRNA 511 (617)
Q Consensus 435 ~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnG-gv~~aL~~~g~l~~l~~~--Gi~yi~v~~vDN~l~ 511 (617)
.+. + +. + ..++....|.+ ++..+|. .+... +.+++.+.+.|.++.
T Consensus 64 ---~~~-~-------~~-~--------------~~~~~~~~~~~~~i~~~l~------~l~~~~~~~d~vlv~~~D~P~i 111 (223)
T cd02513 64 ---EVP-F-------LR-P--------------AELATDTASSIDVILHALD------QLEELGRDFDIVVLLQPTSPLR 111 (223)
T ss_pred ---Cce-e-------eC-C--------------hHHCCCCCCcHHHHHHHHH------HHHHhCCCCCEEEEeCCCCCcC
Confidence 011 0 10 1 01111111222 3333332 33332 367999999999999
Q ss_pred cccHH----HHHHHHHcCCcEEEEEeecc
Q 007117 512 IGNSM----FLGFVKSCGADIGFQISEYA 536 (617)
Q Consensus 512 ~~DP~----flG~~~~~~~d~~~kvV~k~ 536 (617)
+|. ++-.+...++++..-+++..
T Consensus 112 --~~~~i~~~i~~~~~~~~~~~~~~~~~~ 138 (223)
T cd02513 112 --SAEDIDEAIELLLSEGADSVFSVTEFH 138 (223)
T ss_pred --CHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 333 34444456778766665543
No 71
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=87.64 E-value=1.5 Score=49.32 Aligned_cols=62 Identities=8% Similarity=0.055 Sum_probs=39.2
Q ss_pred EEEEccCCCCCCC----C-CCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 007117 358 MVLVVHNSEEGNE----C-DPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 428 (617)
Q Consensus 358 vvllAGG~GtRg~----~-~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~ 428 (617)
.|+||||.|||.. . .||-+ +++..++++++... +++.+.+ .. ..+|.|+..-.....+.+++
T Consensus 3 ~vILAgG~GtRl~PlS~~~~PK~~-l~l~g~~~ll~~tl-----~~l~~~~--~~-~iviv~~~~~~~~~~~~l~~ 69 (468)
T TIGR01479 3 PVILAGGSGTRLWPLSRELYPKQF-LALVGDLTMLQQTL-----KRLAGLP--CS-SPLVICNEEHRFIVAEQLRE 69 (468)
T ss_pred EEEecCcccccCCccccCCCCCce-eEcCCCCcHHHHHH-----HHHhcCC--Cc-CcEEecCHHHHHHHHHHHHH
Confidence 5899999999953 3 39984 45545689877654 4554422 22 34577776544555666654
No 72
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=87.51 E-value=9.1 Score=39.02 Aligned_cols=61 Identities=13% Similarity=0.126 Sum_probs=36.9
Q ss_pred EEEccC--CCCCCC----CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHC
Q 007117 359 VLVVHN--SEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN 429 (617)
Q Consensus 359 vllAGG--~GtRg~----~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~ 429 (617)
|+|||| .|||.. ..||.+ +++ .++++++... +.+.+. .+.. -++|.|.. ..+.+.++|.+.
T Consensus 2 iIla~G~~~GtRl~plt~~~PK~l-lpv-~g~plI~~~l-----~~l~~~-~gi~-~i~iv~~~-~~~~i~~~l~~~ 68 (257)
T cd06428 2 VILVGGPQKGTRFRPLSLDVPKPL-FPV-AGKPMIHHHI-----EACAKV-PDLK-EVLLIGFY-PESVFSDFISDA 68 (257)
T ss_pred EEEccCCCCCcccCCccCCCCccc-CeE-CCeeHHHHHH-----HHHHhc-CCCc-EEEEEecC-CHHHHHHHHHhc
Confidence 678888 899942 239983 344 4568877654 444431 1121 23455554 677888998763
No 73
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=86.76 E-value=7.3 Score=43.24 Aligned_cols=139 Identities=9% Similarity=0.026 Sum_probs=75.9
Q ss_pred ceEEEEEccCCCCCCC----CCCCcccccCCCCcc-hHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHC
Q 007117 355 KKAMVLVVHNSEEGNE----CDPHSVVSESTANKS-LALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN 429 (617)
Q Consensus 355 kvavvllAGG~GtRg~----~~pK~~~i~l~s~ks-lf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~ 429 (617)
++.+|+||||.|||+. .-||.+ +++ -++. +.++.. +.+.+. +.. .++|.|+ ...+..+++|.+.
T Consensus 15 ~~~aVILAaG~GtRl~pLT~~~PK~l-lpv-~gkp~lI~~~l-----~~l~~~--Gi~-~i~vv~~-~~~~~i~~~~~~~ 83 (425)
T PRK00725 15 DTLALILAGGRGSRLKELTDKRAKPA-VYF-GGKFRIIDFAL-----SNCINS--GIR-RIGVLTQ-YKAHSLIRHIQRG 83 (425)
T ss_pred ceEEEEECCCCCCcchhhhCCCccee-EEE-CCEEEEhHHHH-----HHHHHC--CCC-eEEEEec-CCHHHHHHHHHhh
Confidence 6899999999999953 239983 334 4564 766644 444442 221 3567776 4677888888753
Q ss_pred CCCCCCCC----cEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEe
Q 007117 430 DHFAFDSK----KVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICT 505 (617)
Q Consensus 430 ~~FGl~~~----~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~ 505 (617)
+++.+. .+.++.+ . ........|-|.||-...-. +.+.+..-+++.|.+
T Consensus 84 --~~~~~~~~~~~i~i~~~--------~------------~~~~~e~~~lGTa~al~~a~-----~~l~~~~~d~~lVl~ 136 (425)
T PRK00725 84 --WSFFREELGEFVDLLPA--------Q------------QRVDEENWYRGTADAVYQNL-----DIIRRYDPKYVVILA 136 (425)
T ss_pred --hcccccCCCCeEEEeCC--------c------------ccCCCCccccCcHHHHHHHH-----HHHHhcCCCEEEEec
Confidence 333111 1111110 0 00001134567766443222 233333346788888
Q ss_pred CCccccc-ccHHHHHHHHHcCCcEEEEE
Q 007117 506 ANPRNAI-GNSMFLGFVKSCGADIGFQI 532 (617)
Q Consensus 506 vDN~l~~-~DP~flG~~~~~~~d~~~kv 532 (617)
-|++... +.. ++-+|..+++++..-+
T Consensus 137 gD~l~~~dl~~-ll~~h~~~~~~~tl~~ 163 (425)
T PRK00725 137 GDHIYKMDYSR-MLADHVESGADCTVAC 163 (425)
T ss_pred CCeEeccCHHH-HHHHHHHcCCCEEEEE
Confidence 8885432 333 4667778888775543
No 74
>COG1873 Protein implicated in RNA metabolism, contains PRC-barrel domain [General function prediction only]
Probab=86.36 E-value=2.4 Score=36.82 Aligned_cols=72 Identities=25% Similarity=0.355 Sum_probs=44.6
Q ss_pred cccHhhccCcEEEEccCCeEeEEEEEec---cCCCceEEEEEeccccccccCcccccccCCCCCCcEEEEecccCcccee
Q 007117 125 EFYTRDLVGMRVVMKETGELVGTVVNVF---NSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 201 (617)
Q Consensus 125 EfY~~DLIG~~V~d~~~g~~lG~V~dV~---~~ga~dllvV~~~~~~~~~~~~~~~~~~~~~~~gke~LIPfv~~~V~~I 201 (617)
.+++.+|.|..|++. +|..+|+|.|+. ++|.-.-|.|... +.... .. ..++.+.|||- .|..|
T Consensus 5 ~~~~s~l~gk~V~~~-~G~~vG~V~dv~ld~~~g~i~~l~v~~~-~~~l~-~~---------~k~~~v~IP~~--~V~aI 70 (87)
T COG1873 5 MMRLSELLGKEVITN-DGKYVGTVSDVVLDIKEGKITGLLVIPT-NKGLF-LF---------GKGKEVIVPYE--YVKAI 70 (87)
T ss_pred hheHHHhcCcEEEcC-CCeEEEEEEeEEEEccCCcEEEEEEecC-Ccccc-cc---------CCCcEEEEehh--HeEEe
Confidence 468999999999975 899999999984 4454444445421 11111 00 02258999996 34444
Q ss_pred ecCCCEEEEeCC
Q 007117 202 DMNGREMQITPP 213 (617)
Q Consensus 202 Dle~~~I~V~~p 213 (617)
...|.|..+
T Consensus 71 ---Gd~III~~~ 79 (87)
T COG1873 71 ---GDIIIIKDV 79 (87)
T ss_pred ---cCEEEEech
Confidence 455665543
No 75
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=85.91 E-value=0.9 Score=44.85 Aligned_cols=38 Identities=11% Similarity=0.005 Sum_probs=27.0
Q ss_pred hcCCceEEEEEccCCCCCCCCCCCcccccCCCC-cchHHHHH
Q 007117 351 VSEGKKAMVLVVHNSEEGNECDPHSVVSESTAN-KSLALLQT 391 (617)
Q Consensus 351 i~~gkvavvllAGG~GtRg~~~pK~~~i~l~s~-kslf~l~~ 391 (617)
+...+++.|+||||+++|.+ .+|.+ +++ .+ +++++...
T Consensus 4 ~~~~~i~~vILAgG~s~RmG-~~K~l-l~~-~g~~~ll~~~i 42 (196)
T PRK00560 4 PMIDNIPCVILAGGKSSRMG-ENKAL-LPF-GSYSSLLEYQY 42 (196)
T ss_pred ccccCceEEEECCcccccCC-CCceE-EEe-CCCCcHHHHHH
Confidence 34457999999999999943 47773 234 45 99977654
No 76
>PRK10122 GalU regulator GalF; Provisional
Probab=85.22 E-value=3.1 Score=44.01 Aligned_cols=62 Identities=16% Similarity=0.105 Sum_probs=40.9
Q ss_pred ceEEEEEccCCCCCCC---CC-CCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHH
Q 007117 355 KKAMVLVVHNSEEGNE---CD-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 427 (617)
Q Consensus 355 kvavvllAGG~GtRg~---~~-pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~ 427 (617)
++.+|++|||.|||.. .. ||.+ +++ -+|++.+... +.+.+.+ .. .++|+|. ...+.+.+||.
T Consensus 3 ~mkavIlAaG~GtRl~PlT~~~PK~l-lpi-~gkpiI~~~l-----~~l~~~G--i~-~i~iv~~-~~~~~i~~~~~ 68 (297)
T PRK10122 3 NLKAVIPVAGLGMHMLPATKAIPKEM-LPI-VDKPMIQYIV-----DEIVAAG--IK-EIVLVTH-ASKNAVENHFD 68 (297)
T ss_pred ceEEEEECCcCCcccCcccCCCCcee-eEE-CCEEHHHHHH-----HHHHHCC--CC-EEEEEcC-CChHHHHHHHh
Confidence 5778999999999942 33 9983 333 4578877654 5555432 21 3566665 47788888886
No 77
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=85.21 E-value=1.8 Score=42.72 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=33.8
Q ss_pred eEEEEEccCCCCC-CCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccch
Q 007117 356 KAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEM 419 (617)
Q Consensus 356 vavvllAGG~GtR-g~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~ 419 (617)
|++|+||||.|+| |...||.+ +++ .++++++... +++.+.+ .+ =.++|.|+....
T Consensus 1 ~~~vILAaG~s~R~~~~~~K~l-~~i-~Gkpll~~~i-----~~l~~~~-~~-~~ivVv~~~~~~ 56 (218)
T cd02516 1 VAAIILAAGSGSRMGADIPKQF-LEL-GGKPVLEHTL-----EAFLAHP-AI-DEIVVVVPPDDI 56 (218)
T ss_pred CEEEEECCcccccCCCCCCcce-eEE-CCeEHHHHHH-----HHHhcCC-CC-CEEEEEeChhHH
Confidence 4679999999999 54468883 233 5789877654 3443311 11 145666765443
No 78
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=85.00 E-value=6.6 Score=39.08 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=37.3
Q ss_pred EEEEccCCCCCCC--C--CCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 007117 358 MVLVVHNSEEGNE--C--DPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 428 (617)
Q Consensus 358 vvllAGG~GtRg~--~--~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~ 428 (617)
+|+||||.|||.. + .||.+ +++ .++++++... +.+.+. +.. .++|.|+. ..+...+++..
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l-~~~-~g~~li~~~l-----~~l~~~--gi~-~i~vv~~~-~~~~~~~~~~~ 64 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCL-LEI-NGKPLLERQI-----ETLKEA--GID-DIVIVTGY-KKEQIEELLKK 64 (229)
T ss_pred CEEEeccCccccchhhCCCCcee-eeE-CCEEHHHHHH-----HHHHHC--CCc-eEEEEecc-CHHHHHHHHhc
Confidence 3789999999942 2 38983 334 4578877654 444442 221 45666665 56677777764
No 79
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=84.78 E-value=1.8 Score=42.93 Aligned_cols=61 Identities=13% Similarity=0.168 Sum_probs=35.3
Q ss_pred EEEEEccCCCCC-CCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHH
Q 007117 357 AMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLF 426 (617)
Q Consensus 357 avvllAGG~GtR-g~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff 426 (617)
++|+||||.|+| |...||.+ +++ .++++++... +++.+. ..+ =.++|.|+....+.....+
T Consensus 1 ~aiIlAaG~s~R~~~~~~K~l-~~l-~gkpll~~~l-----~~l~~~-~~~-~~ivVv~~~~~~~~~~~~~ 62 (217)
T TIGR00453 1 SAVIPAAGRGTRFGSGVPKQY-LEL-GGRPLLEHTL-----DAFLAH-PAI-DEVVVVVSPEDQEFFQKYL 62 (217)
T ss_pred CEEEEcCcccccCCCCCCccE-eEE-CCeEHHHHHH-----HHHhcC-CCC-CEEEEEEChHHHHHHHHHh
Confidence 368999999999 55458983 233 4788877654 444331 112 1456666554444444433
No 80
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=84.67 E-value=2.2 Score=40.85 Aligned_cols=142 Identities=8% Similarity=0.042 Sum_probs=73.5
Q ss_pred EEEEccCCCCCCCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCCCCC
Q 007117 358 MVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSK 437 (617)
Q Consensus 358 vvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FGl~~~ 437 (617)
+|+||||.|+|.+ .+|.+ +++ .++++++... +.+.+. .+ -.++|.|+...++....+ .. .+|
T Consensus 2 ~iIla~G~s~R~g-~~K~l-l~~-~g~pll~~~i-----~~l~~~--~~-~~iivv~~~~~~~~~~~~-~~--~~~---- 63 (188)
T TIGR03310 2 AIILAAGLSSRMG-QNKLL-LPY-KGKTILEHVV-----DNALRL--FF-DEVILVLGHEADELVALL-AN--HSN---- 63 (188)
T ss_pred eEEECCCCcccCC-CCcee-ccc-CCeeHHHHHH-----HHHHHc--CC-CcEEEEeCCcHHHHHHHh-cc--CCC----
Confidence 6899999999943 47873 233 5788877654 344332 12 256777776544322222 11 122
Q ss_pred cEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCcccccccHHH
Q 007117 438 KVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIGNSMF 517 (617)
Q Consensus 438 ~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~~~DP~f 517 (617)
+. .+... . ......++++.++. . ...-+++.+...|+++. +|..
T Consensus 64 -v~--------~v~~~-------------~----~~~g~~~si~~~l~-~-------~~~~~~vlv~~~D~P~i--~~~~ 107 (188)
T TIGR03310 64 -IT--------LVHNP-------------Q----YAEGQSSSIKLGLE-L-------PVQSDGYLFLLGDQPFV--TPDI 107 (188)
T ss_pred -eE--------EEECc-------------C----hhcCHHHHHHHHhc-C-------CCCCCEEEEEeCCcCCC--CHHH
Confidence 11 11111 0 00011245666654 1 12357999999999987 3333
Q ss_pred H----HHHHHcCCcEEEEEeeccCCccccccceeeHHHHHHhhh
Q 007117 518 L----GFVKSCGADIGFQISEYAKHSEERFNTMLSMNVMKKLTN 557 (617)
Q Consensus 518 l----G~~~~~~~d~~~kvV~k~~~~~E~~~h~fs~~fl~~~~~ 557 (617)
+ -.+...+.++..-+.. . ...+.+ +|+.+.+..+..
T Consensus 108 i~~l~~~~~~~~~~~~~~~~~-~-~~~~Pl--~~~~~~~~~l~~ 147 (188)
T TIGR03310 108 IQLLLEAFALKNDEIVVPLYK-G-KRGHPV--LFPRKLFPELLA 147 (188)
T ss_pred HHHHHHHHHhCCCcEEEeecC-C-ccCCCE--EECHHHHHHHHh
Confidence 3 3334455544333222 1 123333 588877777643
No 81
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=84.17 E-value=15 Score=40.88 Aligned_cols=62 Identities=11% Similarity=0.060 Sum_probs=39.1
Q ss_pred ceEEEEEccCCCCCCC-CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHH
Q 007117 355 KKAMVLVVHNSEEGNE-CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 427 (617)
Q Consensus 355 kvavvllAGG~GtRg~-~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~ 427 (617)
++..|+||||.|||.. ..||.+ +++ -++++++... +.+.+. +. -.++|.|+.. .+.+.++|.
T Consensus 3 ~~~avIlAaG~g~Rl~~~~pK~l-~pi-~g~pli~~~l-----~~l~~~--gi-~~iiiv~~~~-~~~i~~~~~ 65 (459)
T PRK14355 3 NLAAIILAAGKGTRMKSDLVKVM-HPL-AGRPMVSWPV-----AAAREA--GA-GRIVLVVGHQ-AEKVREHFA 65 (459)
T ss_pred cceEEEEcCCCCcccCCCCCcee-cee-CCccHHHHHH-----HHHHhc--CC-CeEEEEECCC-HHHHHHHhc
Confidence 4678999999999954 458983 334 3568876644 444442 11 2566777644 556667764
No 82
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=83.32 E-value=2 Score=47.44 Aligned_cols=60 Identities=10% Similarity=0.049 Sum_probs=38.3
Q ss_pred EEEEccCCCCCC-CCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 007117 358 MVLVVHNSEEGN-ECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 428 (617)
Q Consensus 358 vvllAGG~GtRg-~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~ 428 (617)
+|+||||.|||. ...||.+ +++ .++++++... +.+.+.+ . -.++|.++.. .+.+.+++.+
T Consensus 3 aiIlAaG~g~R~~~~~pK~l-~~i-~gkpli~~~l-----~~l~~~g--~-~~iiiv~~~~-~~~i~~~~~~ 63 (451)
T TIGR01173 3 VVILAAGKGTRMKSDLPKVL-HPL-AGKPMLEHVI-----DAARALG--P-QKIHVVYGHG-AEQVRKALAN 63 (451)
T ss_pred EEEEcCCCCcccCCCCchhh-cee-CCccHHHHHH-----HHHHhCC--C-CeEEEEECCC-HHHHHHHhcC
Confidence 688999999994 4449983 334 5678877654 4444422 1 2456777754 5567777654
No 83
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=83.26 E-value=2.9 Score=41.78 Aligned_cols=54 Identities=11% Similarity=0.125 Sum_probs=34.1
Q ss_pred ceEEEEEccCCCCC-CCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCcc
Q 007117 355 KKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPAL 417 (617)
Q Consensus 355 kvavvllAGG~GtR-g~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~ 417 (617)
++++|+||||.|+| |+..||.+ +++ .++++++... +++.+.+ .+ =.++|.|+..
T Consensus 3 ~~~~iILAaG~s~R~g~~~~K~l-~~~-~g~pli~~~l-----~~l~~~~-~~-~~ivvv~~~~ 57 (227)
T PRK00155 3 MVYAIIPAAGKGSRMGADRPKQY-LPL-GGKPILEHTL-----EAFLAHP-RI-DEIIVVVPPD 57 (227)
T ss_pred ceEEEEEcCccccccCCCCCcee-eEE-CCEEHHHHHH-----HHHHcCC-CC-CEEEEEeChH
Confidence 57889999999999 65568983 233 4788877654 4443311 11 1456666644
No 84
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=82.89 E-value=3.4 Score=45.76 Aligned_cols=62 Identities=10% Similarity=0.079 Sum_probs=38.2
Q ss_pred eEEEEEccCCCCCC-CCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 007117 356 KAMVLVVHNSEEGN-ECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 428 (617)
Q Consensus 356 vavvllAGG~GtRg-~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~ 428 (617)
+++|+||||.|||. ...||.+ +++ .++++++... +++.+.+ . ...+|.+... .+.+.+++.+
T Consensus 2 ~~~iIlAaG~gsR~~~~~pK~l-l~v-~gkpli~~~l-----~~l~~~g--~-~~iivvv~~~-~~~i~~~~~~ 64 (450)
T PRK14360 2 LAVAILAAGKGTRMKSSLPKVL-HPL-GGKSLVERVL-----DSCEELK--P-DRRLVIVGHQ-AEEVEQSLAH 64 (450)
T ss_pred ceEEEEeCCCCccCCCCCChhc-CEE-CChhHHHHHH-----HHHHhCC--C-CeEEEEECCC-HHHHHHHhcc
Confidence 67899999999994 4459983 344 5678877654 4444422 1 2455555543 3456666653
No 85
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=82.82 E-value=2.8 Score=47.17 Aligned_cols=63 Identities=11% Similarity=0.092 Sum_probs=41.1
Q ss_pred ceEEEEEccCCCCCC-CCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 007117 355 KKAMVLVVHNSEEGN-ECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 428 (617)
Q Consensus 355 kvavvllAGG~GtRg-~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~ 428 (617)
.++.|+||||.|||. ...||.+ +++ .++++++... +++.+.+ . -.++|.++.. .+.+.++|..
T Consensus 4 ~~~avILAaG~gtRm~~~~pK~l-lpi-~gkpli~~~l-----~~l~~~g--~-~~iivvv~~~-~~~i~~~~~~ 67 (482)
T PRK14352 4 PTAVIVLAAGAGTRMRSDTPKVL-HTL-AGRSMLGHVL-----HAAAGLA--P-QHLVVVVGHD-RERVAPAVAE 67 (482)
T ss_pred CceEEEEcCCCCCcCCCCCCcee-cee-CCccHHHHHH-----HHHHhcC--C-CcEEEEECCC-HHHHHHHhhc
Confidence 578899999999995 4459983 334 4788877654 4444321 1 2677777754 4567777753
No 86
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=82.25 E-value=8.9 Score=42.12 Aligned_cols=144 Identities=12% Similarity=0.099 Sum_probs=86.0
Q ss_pred CceEEEEEccCCCCCCC--CC--CCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHC
Q 007117 354 GKKAMVLVVHNSEEGNE--CD--PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN 429 (617)
Q Consensus 354 gkvavvllAGG~GtRg~--~~--pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~ 429 (617)
.++-.++||||+|+|+. ++ +|. .+++.-+.-+.++-. .++.. ..---++|.|-...| ...+++..-
T Consensus 4 ~~~laiILaGg~G~rL~~LT~~Rakp-AVpFgGkYRiIDF~L-----SN~vN---SGi~~I~VltQy~~~-SL~~Hi~~G 73 (393)
T COG0448 4 KNVLAIILAGGRGSRLSPLTKDRAKP-AVPFGGKYRIIDFAL-----SNCVN---SGIRRIGVLTQYKSH-SLNDHIGRG 73 (393)
T ss_pred cceEEEEEcCCCCCccchhhhCcccc-ccccCceeEEEeEEc-----ccccc---cCCCeEEEEeccchh-HHHHHhhCC
Confidence 36788999999999953 33 565 234444444444422 33322 112357888988888 777788887
Q ss_pred CCCCCCCC--cEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCC
Q 007117 430 DHFAFDSK--KVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTAN 507 (617)
Q Consensus 430 ~~FGl~~~--~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vD 507 (617)
..|+++.. .|+++. +-... + ++.. . -|.. .|++++ +..+.+.+.+|+.|.+-|
T Consensus 74 ~~w~l~~~~~~v~ilp-----~~~~~--~---~~~w---------y-~Gta---dai~Qn--l~~i~~~~~eyvlIlsgD 128 (393)
T COG0448 74 WPWDLDRKNGGVFILP-----AQQRE--G---GERW---------Y-EGTA---DAIYQN--LLIIRRSDPEYVLILSGD 128 (393)
T ss_pred CccccccccCcEEEeC-----chhcc--C---CCcc---------e-eccH---HHHHHh--HHHHHhcCCCEEEEecCC
Confidence 78877644 344432 21111 0 1111 1 1211 233332 445667899999999888
Q ss_pred ccccccc-HHHHHHHHHcCCcEEEEEe
Q 007117 508 PRNAIGN-SMFLGFVKSCGADIGFQIS 533 (617)
Q Consensus 508 N~l~~~D-P~flG~~~~~~~d~~~kvV 533 (617)
=+-- .| -.+|=+|++.|+||..-|.
T Consensus 129 hIYk-mDy~~ml~~H~~~gadiTv~~~ 154 (393)
T COG0448 129 HIYK-MDYSDMLDFHIESGADVTVAVK 154 (393)
T ss_pred EEEe-cCHHHHHHHHHHcCCCEEEEEE
Confidence 6544 33 3478999999999977664
No 87
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=81.25 E-value=29 Score=34.67 Aligned_cols=60 Identities=10% Similarity=0.024 Sum_probs=36.8
Q ss_pred ceEEEEEccCCCCCCCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 007117 355 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 428 (617)
Q Consensus 355 kvavvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~ 428 (617)
++++|++|+|.++|.. .|-+ +++ .++++++... +.+.+.+ .+ -.++|.|. ++.+.+++++
T Consensus 2 ~~~aiIlA~g~s~R~~--~K~l-~~i-~GkPli~~~i-----~~l~~~~-~~-~~ivv~t~---~~~i~~~~~~ 61 (238)
T PRK13368 2 KVVVVIPARYGSSRLP--GKPL-LDI-LGKPMIQHVY-----ERAAQAA-GV-EEVYVATD---DQRIEDAVEA 61 (238)
T ss_pred cEEEEEecCCCCCCCC--CCcc-Ccc-CCcCHHHHHH-----HHHHhcC-CC-CeEEEECC---hHHHHHHHHH
Confidence 4788999999999953 3652 233 5788877644 3443321 11 13455553 4778888874
No 88
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=81.20 E-value=2.7 Score=46.54 Aligned_cols=62 Identities=5% Similarity=0.028 Sum_probs=39.5
Q ss_pred ceEEEEEccCCCCCC-CCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHH
Q 007117 355 KKAMVLVVHNSEEGN-ECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 427 (617)
Q Consensus 355 kvavvllAGG~GtRg-~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~ 427 (617)
++.+|+||||.|||. ...||.+ +++ .++++++... +.+.+. +. -..+|.|+. .++.+.+++.
T Consensus 5 ~~~aiILAaG~gsR~~~~~pK~l-l~v-~gkpli~~~l-----~~l~~~--gi-~~ivvv~~~-~~~~i~~~~~ 67 (446)
T PRK14353 5 TCLAIILAAGEGTRMKSSLPKVL-HPV-AGRPMLAHVL-----AAAASL--GP-SRVAVVVGP-GAEAVAAAAA 67 (446)
T ss_pred cceEEEEcCCCCCccCCCCCccc-CEE-CCchHHHHHH-----HHHHhC--CC-CcEEEEECC-CHHHHHHHhh
Confidence 578899999999995 4459983 333 4678877655 444432 11 245566665 4566667664
No 89
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=81.07 E-value=3.4 Score=42.31 Aligned_cols=65 Identities=17% Similarity=0.119 Sum_probs=42.2
Q ss_pred CceEEEEEccCCCCC-CCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHH
Q 007117 354 GKKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 427 (617)
Q Consensus 354 gkvavvllAGG~GtR-g~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~ 427 (617)
.++.+|++|+|.||| |...||-+ +.+ .+++++.... +.+... ..-=.++|.++..-+....++.+
T Consensus 3 ~~~~~vilAaG~G~R~~~~~pKq~-l~l-~g~pll~~tl-----~~f~~~--~~i~~Ivvv~~~~~~~~~~~~~~ 68 (230)
T COG1211 3 MMVSAVILAAGFGSRMGNPVPKQY-LEL-GGRPLLEHTL-----EAFLES--PAIDEIVVVVSPEDDPYFEKLPK 68 (230)
T ss_pred ceEEEEEEcCccccccCCCCCceE-EEE-CCEEehHHHH-----HHHHhC--cCCCeEEEEEChhhhHHHHHhhh
Confidence 468999999999999 66569973 222 6788876544 333331 11114567777667777777665
No 90
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=81.06 E-value=2.8 Score=46.04 Aligned_cols=35 Identities=14% Similarity=0.039 Sum_probs=26.5
Q ss_pred ceEEEEEccCCCCC-CCCCCCcccccCCCCcchHHHHH
Q 007117 355 KKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQT 391 (617)
Q Consensus 355 kvavvllAGG~GtR-g~~~pK~~~i~l~s~kslf~l~~ 391 (617)
++++|+||||.|+| |...||.+ +++ .++++++...
T Consensus 5 ~v~aIILAAG~GsRmg~~~pKql-l~l-~GkPll~~tl 40 (378)
T PRK09382 5 DISLVIVAAGRSTRFSAEVKKQW-LRI-GGKPLWLHVL 40 (378)
T ss_pred cceEEEECCCCCccCCCCCCeeE-EEE-CCeeHHHHHH
Confidence 58899999999999 55569983 333 5788877544
No 91
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=80.75 E-value=1.8 Score=41.64 Aligned_cols=56 Identities=9% Similarity=0.115 Sum_probs=33.7
Q ss_pred CceEEEEEeCCcccccccHHHHHHHHH----cCCcEEEEEeeccCCccccccceeeHHHHHHhhh
Q 007117 497 GVEYIQICTANPRNAIGNSMFLGFVKS----CGADIGFQISEYAKHSEERFNTMLSMNVMKKLTN 557 (617)
Q Consensus 497 Gi~yi~v~~vDN~l~~~DP~flG~~~~----~~~d~~~kvV~k~~~~~E~~~h~fs~~fl~~~~~ 557 (617)
+.+++.|...|.+++ +|..+-.... .+.++.. + ......+.+--+|+.+++..+..
T Consensus 87 ~~~~vlv~~~D~P~i--~~~~i~~l~~~~~~~~~~~~~-~--~~~~~~~P~~~~~~~~~~~~l~~ 146 (186)
T TIGR02665 87 GTDWVLTVPCDTPFL--PEDLVARLAAALEASDADIAV-A--HDGGRWHPVFALWPVALAPDLEA 146 (186)
T ss_pred CCCeEEEEecCCCcC--CHHHHHHHHHHhhccCCcEEE-E--ecCCcccCEEEEEhHHHHHHHHH
Confidence 467999999999988 4444544433 2444443 2 22123444444788888777754
No 92
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=80.63 E-value=2.9 Score=40.59 Aligned_cols=68 Identities=13% Similarity=0.064 Sum_probs=37.7
Q ss_pred chHHHHHhhCchhHHHHHcCceEEEEEeCCcccccccHHHHHHHH----HcCCcEEEEEeeccCCccccccceeeHHHHH
Q 007117 478 GGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIGNSMFLGFVK----SCGADIGFQISEYAKHSEERFNTMLSMNVMK 553 (617)
Q Consensus 478 Ggv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~~~DP~flG~~~----~~~~d~~~kvV~k~~~~~E~~~h~fs~~fl~ 553 (617)
.+++.+|.. ....+.+|+.|...|-+++ .|-.+-..+ ....++.. .....-.+.. .+|+.+.+.
T Consensus 82 ~si~~gl~~------~~~~~~d~vlv~~~D~P~v--~~~~i~~L~~~~~~~~~~~~~---~~~~g~~~~p-~~~~~~~~~ 149 (190)
T TIGR03202 82 HSLKCGLRK------AEAMGADAVVILLADQPFL--TADVINALLALAKRRPDDYVA---ASFKGKPRPP-ILFSKSLFP 149 (190)
T ss_pred HHHHHHHHH------hccCCCCeEEEEeCCCCCC--CHHHHHHHHHHHhhCCCCEEE---EecCCCCCCC-eEEcHHHHH
Confidence 467776653 2234678999999999999 333333332 22333322 2211111222 478888887
Q ss_pred Hhhh
Q 007117 554 KLTN 557 (617)
Q Consensus 554 ~~~~ 557 (617)
.+..
T Consensus 150 ~l~~ 153 (190)
T TIGR03202 150 KLKA 153 (190)
T ss_pred HHHh
Confidence 7754
No 93
>COG2451 Ribosomal protein L35AE/L33A [Translation, ribosomal structure and biogenesis]
Probab=80.40 E-value=2.8 Score=36.72 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=23.9
Q ss_pred ceEEEEecCCCCHHHHhcccCCeEEEe
Q 007117 88 KSWILTFEGIDTVEQARPLVGSTLLAR 114 (617)
Q Consensus 88 ~~~ivkfegid~re~Ae~L~G~~l~v~ 114 (617)
+..|+|++|+||+++|..|.|..++..
T Consensus 26 ~~~liKi~gv~s~~eA~~y~gk~v~yk 52 (100)
T COG2451 26 NVSLIKIEGVDSPEEAQFYLGKRVCYK 52 (100)
T ss_pred ceEEEEEecCCCHHHHHhhhccEEEEE
Confidence 578999999999999999999977653
No 94
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=79.40 E-value=2.3 Score=41.40 Aligned_cols=35 Identities=11% Similarity=-0.015 Sum_probs=26.0
Q ss_pred ceEEEEEccCCCCCCCCCCCcccccCCCCcchHHHHH
Q 007117 355 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQT 391 (617)
Q Consensus 355 kvavvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~ 391 (617)
++.+|+||||.|+|.+..+|.+ +++ .++++++...
T Consensus 3 ~~~~vILA~G~s~Rm~~~~K~l-l~~-~g~~ll~~~i 37 (193)
T PRK00317 3 PITGVILAGGRSRRMGGVDKGL-QEL-NGKPLIQHVI 37 (193)
T ss_pred CceEEEEcCCCcccCCCCCCce-eEE-CCEEHHHHHH
Confidence 6889999999999953468873 233 5789877655
No 95
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=76.66 E-value=2.8 Score=41.46 Aligned_cols=34 Identities=3% Similarity=-0.079 Sum_probs=24.4
Q ss_pred ceEEEEEccCCCCCCCCCCCcccccCCCCcchHHHHH
Q 007117 355 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQT 391 (617)
Q Consensus 355 kvavvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~ 391 (617)
+++.|+||||+|+|-+. +|.+ +++ .++++++...
T Consensus 7 ~~~~vILAgG~s~Rmg~-~K~l-l~~-~g~~ll~~~i 40 (200)
T PRK02726 7 NLVALILAGGKSSRMGQ-DKAL-LPW-QGVPLLQRVA 40 (200)
T ss_pred CceEEEEcCCCcccCCC-Ccee-eEE-CCEeHHHHHH
Confidence 58899999999999322 6772 233 4788877654
No 96
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=75.73 E-value=5 Score=45.28 Aligned_cols=62 Identities=11% Similarity=0.128 Sum_probs=39.3
Q ss_pred ceEEEEEccCCCCCC-CCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHH
Q 007117 355 KKAMVLVVHNSEEGN-ECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 427 (617)
Q Consensus 355 kvavvllAGG~GtRg-~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~ 427 (617)
++.+|+||||.|||. ..-||.+ +++ .++++++... +++.+.+ . -.++|.|+. ..+..+++|.
T Consensus 7 ~~~avILAaG~gtRl~~~~pK~l-lpi-~gkpli~~~l-----~~l~~~g--i-~~ivvv~~~-~~~~i~~~~~ 69 (481)
T PRK14358 7 PLDVVILAAGQGTRMKSALPKVL-HPV-AGRPMVAWAV-----KAARDLG--A-RKIVVVTGH-GAEQVEAALQ 69 (481)
T ss_pred CceEEEECCCCCCcCCCCCCcee-cEE-CCeeHHHHHH-----HHHHhCC--C-CeEEEEeCC-CHHHHHHHhc
Confidence 578899999999995 4459983 233 4678877644 4444422 2 145666664 4566777764
No 97
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=75.02 E-value=6 Score=40.28 Aligned_cols=60 Identities=13% Similarity=0.077 Sum_probs=38.4
Q ss_pred EEEEccCCCCCCC----CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 007117 358 MVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 428 (617)
Q Consensus 358 vvllAGG~GtRg~----~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~ 428 (617)
+|+||||.|||.. .-||.+ +++ .+++++++.. +.+... +.. ..+|+|+.. .+.+.++|..
T Consensus 3 avIlAaG~gtRl~plt~~~pK~l-lpi-~g~pli~~~l-----~~l~~~--gi~-~v~iv~~~~-~~~i~~~~~~ 66 (260)
T TIGR01099 3 AVIPAAGLGTRFLPATKAIPKEM-LPI-VDKPLIQYVV-----EEAVEA--GIE-DILIVTGRG-KRAIEDHFDT 66 (260)
T ss_pred EEEEcccCcccCCCcccCCCcee-EEE-CCEEHHHHHH-----HHHHhC--CCC-EEEEEeCCc-HHHHHHHhcc
Confidence 6899999999943 238873 333 3578877654 444432 221 466777755 5668888863
No 98
>PRK04337 50S ribosomal protein L35Ae; Validated
Probab=74.76 E-value=3.3 Score=35.96 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=24.8
Q ss_pred CceEEEEecCCCCHHHHhcccCCeEE-EeC
Q 007117 87 QKSWILTFEGIDTVEQARPLVGSTLL-ARE 115 (617)
Q Consensus 87 ~~~~ivkfegid~re~Ae~L~G~~l~-v~~ 115 (617)
.+..|+|++||+|+++|+-|.|..+. +.+
T Consensus 19 ~~~aLlkiegv~~~~~a~fylGKrv~yvyk 48 (87)
T PRK04337 19 NRQVIIKPLGVDDREEAAKLIGRKVIWKDP 48 (87)
T ss_pred CceEEEEEcCcCCHHHHHhhcCceEEEEeC
Confidence 45789999999999999999999874 443
No 99
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=74.10 E-value=9.2 Score=38.97 Aligned_cols=30 Identities=3% Similarity=0.062 Sum_probs=21.3
Q ss_pred EEEEccCCCCCCCCCCCcccccCCCCcchHHHHH
Q 007117 358 MVLVVHNSEEGNECDPHSVVSESTANKSLALLQT 391 (617)
Q Consensus 358 vvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~ 391 (617)
+|++|+|.|||.. +|.+ +++ .++++++...
T Consensus 2 ~iIpA~g~s~R~~--~K~L-~~l-~GkPli~~~l 31 (238)
T TIGR00466 2 VIIPARLASSRLP--GKPL-EDI-FGKPMIVHVA 31 (238)
T ss_pred EEEecCCCCCCCC--CCee-ccc-CCcCHHHHHH
Confidence 5889999999962 5763 233 5788877554
No 100
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=73.20 E-value=4 Score=44.28 Aligned_cols=35 Identities=3% Similarity=-0.099 Sum_probs=25.7
Q ss_pred CceEEEEEccCCCCCCCCCCCcccccCCCCcchHHHHH
Q 007117 354 GKKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQT 391 (617)
Q Consensus 354 gkvavvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~ 391 (617)
+.+..|+||||+|+|-+ .+|.+ +++ .++++++...
T Consensus 159 ~~i~~IILAGGkSsRMG-~dKaL-L~~-~GkpLl~~~i 193 (346)
T PRK14500 159 TPLYGLVLTGGKSRRMG-KDKAL-LNY-QGQPHAQYLY 193 (346)
T ss_pred CCceEEEEeccccccCC-CCccc-cee-CCccHHHHHH
Confidence 36889999999999943 47773 233 4789987754
No 101
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=73.12 E-value=7.1 Score=39.96 Aligned_cols=60 Identities=12% Similarity=0.079 Sum_probs=37.9
Q ss_pred EEEEccCCCCCCC----CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 007117 358 MVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 428 (617)
Q Consensus 358 vvllAGG~GtRg~----~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~ 428 (617)
+|+||||.|||.. .-||.+ +++ .++++++... +.+.+. +.. .++|+|.. ..+.+.++|..
T Consensus 3 aiIlAaG~gtRl~plt~~~pK~l-lpv-~gkpli~~~l-----~~l~~~--gi~-~i~iv~~~-~~~~i~~~~~~ 66 (267)
T cd02541 3 AVIPAAGLGTRFLPATKAIPKEM-LPI-VDKPVIQYIV-----EEAVAA--GIE-DIIIVTGR-GKRAIEDHFDR 66 (267)
T ss_pred EEEEcCCCCccCCCcccCCCcee-eEE-CCEEHHHHHH-----HHHHHC--CCC-EEEEEeCC-chHHHHHHhCC
Confidence 5899999999943 239983 333 3678877755 444442 221 45666665 55668888854
No 102
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=72.43 E-value=27 Score=38.63 Aligned_cols=58 Identities=12% Similarity=0.139 Sum_probs=34.5
Q ss_pred EEEEEccCCCCCCC-CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHH
Q 007117 357 AMVLVVHNSEEGNE-CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLF 426 (617)
Q Consensus 357 avvllAGG~GtRg~-~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff 426 (617)
.+|+||||.|||.. .-||.+ +++ .++++++... +.+.+.. -..+|.|+.. .+.+.+++
T Consensus 2 ~avIlA~G~gtRl~~~~pK~l-~~v-~gkpli~~~l-----~~l~~~~----~~i~vv~~~~-~~~i~~~~ 60 (448)
T PRK14357 2 RALVLAAGKGTRMKSKIPKVL-HKI-SGKPMINWVI-----DTAKKVA----QKVGVVLGHE-AELVKKLL 60 (448)
T ss_pred eEEEECCCCCccCCCCCCcee-eEE-CCeeHHHHHH-----HHHHhcC----CcEEEEeCCC-HHHHHHhc
Confidence 36899999999954 348873 344 4678877654 3443321 1356666643 34555554
No 103
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=72.11 E-value=8.2 Score=42.98 Aligned_cols=62 Identities=13% Similarity=0.080 Sum_probs=38.3
Q ss_pred ceEEEEEccCCCCCCC-CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHH
Q 007117 355 KKAMVLVVHNSEEGNE-CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 427 (617)
Q Consensus 355 kvavvllAGG~GtRg~-~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~ 427 (617)
++.+|+||||.|||.. ..||.+ +++ .++++++... +.+.+. .. -..+|.|+. ..+.+++++.
T Consensus 5 ~~~aiIlAaG~gtRl~~~~pK~l-~~i-~gkpli~~~i-----~~l~~~--gi-~~i~vv~~~-~~~~i~~~~~ 67 (456)
T PRK09451 5 AMSVVILAAGKGTRMYSDLPKVL-HTL-AGKPMVQHVI-----DAANEL--GA-QHVHLVYGH-GGDLLKQTLA 67 (456)
T ss_pred CceEEEEcCCCCCcCCCCCChhc-cee-CChhHHHHHH-----HHHHhc--CC-CcEEEEECC-CHHHHHHhhc
Confidence 5788999999999954 459973 333 5688866544 344332 11 145666664 4455666664
No 104
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=71.49 E-value=4 Score=44.44 Aligned_cols=35 Identities=0% Similarity=-0.087 Sum_probs=24.8
Q ss_pred CceEEEEEccCCCCCCCCCCCcccccCCCCcchHHHHH
Q 007117 354 GKKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQT 391 (617)
Q Consensus 354 gkvavvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~ 391 (617)
-+++.|+||||+|+|-+ .+|.+ +++ .++++++...
T Consensus 173 ~~i~~iILAGG~SsRmG-~~K~l-l~~-~Gk~ll~~~l 207 (369)
T PRK14490 173 VPLSGLVLAGGRSSRMG-SDKAL-LSY-HESNQLVHTA 207 (369)
T ss_pred CCceEEEEcCCccccCC-CCcEE-EEE-CCccHHHHHH
Confidence 45789999999999933 37873 233 4788876544
No 105
>TIGR01150 puhA photosynthetic reaction center, subunit H, bacterial. This model describes the photosynthetic reaction center H subunit in non-oxygenic photosynthetic bacteria. The reaction center is an integral membrane pigment-protein that carries out light-driven electron transfer reactions. At the core of reaction center is a collection light-harvesting cofactors and closely associated polypeptides. The core protein complex is made of L, M and H subunits. The common cofactors include bacterichlorophyll, bacteriopheophytins, ubiquinone and no-heme ferrous iron. The net result of electron tranfer reactions is the establishment of proton electrochemical gradient and production of reducing equivalents in the form of NADH. Ultimately, the process results in the reduction of C02 to carbohydrates(C6H12O6) In non-oxygenic organisms, the electron donor is an organic acid rather than water. Much of our current functional understanding of photosynthesis comes from the structural determination
Probab=70.70 E-value=13 Score=38.17 Aligned_cols=82 Identities=24% Similarity=0.379 Sum_probs=54.8
Q ss_pred cCCeEEEeCCCCCCCCC------------CcccH----hhccCcEEEEccCCeEeEEEEEec-cCCCc--eEEEEEeccc
Q 007117 107 VGSTLLAREGDRPELED------------GEFYT----RDLVGMRVVMKETGELVGTVVNVF-NSGAN--DLLHVMCYSS 167 (617)
Q Consensus 107 ~G~~l~v~~~~lp~L~e------------~EfY~----~DLIG~~V~d~~~g~~lG~V~dV~-~~ga~--dllvV~~~~~ 167 (617)
+|---|++|.|.|+|.- .+|-+ -|-.||.|+- -+|+..|+|+|++ +.+.+ -.|+|+..
T Consensus 111 VGPaswa~R~D~Pdlt~~G~pkIvPlrva~~f~v~~~d~DPrG~pV~g-~Dg~v~GtV~D~WVDr~E~~iRYlEVel~-- 187 (252)
T TIGR01150 111 VGPASYAERRELPDLTVHGHNKIVPLRVATDFSVAAGDVDPRGLPVVA-ADGEVAGKVTDLWVDRPEQYFRYLEVELA-- 187 (252)
T ss_pred cCcccccccCCCCccCCCCCeeEEeeeccCCceecCCCCCCCCCeeEc-CCCceeeEEEEEEEcCccceeeEEEEEec--
Confidence 45555677777666641 13333 3679999995 5799999999996 45555 46677641
Q ss_pred cccccCcccccccCCCCCC-cEEEEecccCccceeecCCCEEEEeCC
Q 007117 168 VNVIEGSEEASSSASDASG-RLVWIPFVEEIVPIVDMNGREMQITPP 213 (617)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~g-ke~LIPfv~~~V~~IDle~~~I~V~~p 213 (617)
.+ +.+|+|+.=. .| ..+++.|+-.
T Consensus 188 -----------------~~~~~vLlP~~f~---~i--~~~~V~v~ai 212 (252)
T TIGR01150 188 -----------------GGARTALLPMGMC---KV--KSDRVVVNSI 212 (252)
T ss_pred -----------------CCCceEEecccce---ec--cCCcEEEEEe
Confidence 34 6899999832 23 6778888653
No 106
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=67.73 E-value=21 Score=40.37 Aligned_cols=91 Identities=14% Similarity=0.222 Sum_probs=61.6
Q ss_pred cCCCcccEEEeCCccchHHHHHHHHH-----CCCCCCCCCcEEEEecCC---cccccCCCCccccceecccCCCCccccc
Q 007117 403 ENRASMPLVLVLPALEMQMLEKLFLD-----NDHFAFDSKKVWFLEEEK---LPIVSRSPTEQNKFKILMKSPWETLQAP 474 (617)
Q Consensus 403 ~~~~~ip~~IMTS~~t~~~T~~ff~~-----~~~FGl~~~~v~~f~Q~~---lP~~~~~~~g~~~gkill~~~~~i~~~P 474 (617)
+..+.+++-| |....+.-.+.+++ .+-||.. =+|.|=.|.. -.|++.+ +..+.++.+++..-|
T Consensus 198 ~g~~~lHFTV--S~eH~~~F~~~~~~~~~~~e~~~~v~-f~IsfS~Qk~sTDTIAv~~d------N~pFR~~dG~LlFRP 268 (513)
T PF14134_consen 198 NGKANLHFTV--SPEHLDLFKKEVEEVKPKYEKKYGVK-FEISFSEQKPSTDTIAVDPD------NTPFRNEDGSLLFRP 268 (513)
T ss_pred CCeEEEEEee--CHHHHHHHHHHHHHHHHHHHHhhCce-EEEEecccCCCCCeeEECCC------CCccCCCCCCEEeCC
Confidence 3346676655 77655555554444 1234542 2566666763 3456666 588888899999999
Q ss_pred CCCchHHHHHhhCchhHHHHHcCceEEEEEeCCcccc
Q 007117 475 VGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNA 511 (617)
Q Consensus 475 ~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~ 511 (617)
.|||.+..- |.+-.-.-|+|=||||+..
T Consensus 269 gGHGALieN---------LN~ldaDiIFIKNIDNVvp 296 (513)
T PF14134_consen 269 GGHGALIEN---------LNDLDADIIFIKNIDNVVP 296 (513)
T ss_pred CcchHHHhh---------hccccCCEEEEeCccccCC
Confidence 999976544 4455678899999999987
No 107
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=66.72 E-value=15 Score=36.67 Aligned_cols=61 Identities=15% Similarity=0.064 Sum_probs=36.6
Q ss_pred EEEEccCCCCCCC----CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHC
Q 007117 358 MVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN 429 (617)
Q Consensus 358 vvllAGG~GtRg~----~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~ 429 (617)
+|+||||.|+|.. ..||.+ +++ .+++++.... +.+.+. +.. -.+|+|+... +.+.+++.+.
T Consensus 3 avIlagg~g~rl~plt~~~pK~l-lpv-~g~pli~~~l-----~~l~~~--gi~-~i~vv~~~~~-~~~~~~~~~~ 67 (216)
T cd02507 3 AVVLADGFGSRFLPLTSDIPKAL-LPV-ANVPLIDYTL-----EWLEKA--GVE-EVFVVCCEHS-QAIIEHLLKS 67 (216)
T ss_pred EEEEeCCCccccCccccCCCccc-ceE-CCEEHHHHHH-----HHHHHC--CCC-eEEEEeCCcH-HHHHHHHHhc
Confidence 4679999999942 239983 333 4678877644 444432 221 3667777554 4556666654
No 108
>PTZ00041 60S ribosomal protein L35a; Provisional
Probab=65.32 E-value=6.3 Score=36.17 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=25.8
Q ss_pred CCceEEEEecCCCCHHHHhcccCCeE-EEeCC
Q 007117 86 GQKSWILTFEGIDTVEQARPLVGSTL-LAREG 116 (617)
Q Consensus 86 ~~~~~ivkfegid~re~Ae~L~G~~l-~v~~~ 116 (617)
..+..|+|++||+|+++|+-|.|..+ ||.+.
T Consensus 37 ~~~~aLlKieGV~~~~~a~fYlGKrvayvyka 68 (120)
T PTZ00041 37 YPNVALLKIEGVNTREDARFYLGKRVAYVYKA 68 (120)
T ss_pred CCceEEEEecCcCChhhhHhhccceEEEEEcC
Confidence 34688999999999999999999987 44444
No 109
>PF01247 Ribosomal_L35Ae: Ribosomal protein L35Ae; InterPro: IPR001780 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The ribosomal L35A eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of: Vertebrate L35A. Caenorhabditis elegans L35A (F10E7.7). Saccharomyces cerevisiae L37A/L37B (Rp47). Plant L35A. Pyrococcus woesei L35A homologue []. These proteins have 87 to 110 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_j 2LP6_A 1SQR_A 4A18_H 4A1D_H 4A19_H 4A1B_H 3IZS_j.
Probab=64.98 E-value=8.5 Score=34.04 Aligned_cols=60 Identities=17% Similarity=0.315 Sum_probs=37.9
Q ss_pred CceEEEEecCCCCHHHHhcccCCeE-EEeCCCCCCCCCCcccHhhccCcEEEEccCCeEeEEEEEeccCCCceEEEEEe
Q 007117 87 QKSWILTFEGIDTVEQARPLVGSTL-LAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMC 164 (617)
Q Consensus 87 ~~~~ivkfegid~re~Ae~L~G~~l-~v~~~~lp~L~e~EfY~~DLIG~~V~d~~~g~~lG~V~dV~~~ga~dllvV~~ 164 (617)
.+..|+|++||+|+++|+.|.|..+ |+.+..-.. . |- ..-...|+|+...-+.. +...+.
T Consensus 19 ~~~aLlKiegV~~~~~a~fylGKrv~yvyk~~~~~--~---------~~-----k~r~iwGkV~r~HGnsG--vVrAkF 79 (95)
T PF01247_consen 19 PNTALLKIEGVNTKEDAQFYLGKRVAYVYKAKNKK--N---------GS-----KGRVIWGKVTRPHGNSG--VVRAKF 79 (95)
T ss_dssp EEEEEEEESS-STCHHHHTTTT-EEEEEECE-SSS--T---------TE-----CSEEEEEEEEEESTTTT--EEEEEE
T ss_pred CCeeEEeecCccCHHHHHhhcCcEEEEEEeccccc--C---------CC-----cEeEEEEEEEeEEcCCC--EEEEEe
Confidence 3578999999999999999999886 445533211 1 11 11246899999865533 555554
No 110
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=64.46 E-value=13 Score=39.43 Aligned_cols=62 Identities=18% Similarity=0.143 Sum_probs=38.1
Q ss_pred eEEEEEccCCCCCC--C--CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 007117 356 KAMVLVVHNSEEGN--E--CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 428 (617)
Q Consensus 356 vavvllAGG~GtRg--~--~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~ 428 (617)
..+|++|||.|||. . .-||.+ +++ .++++++... +.+.+.+ . -.++|.++ ...+.+.++|..
T Consensus 9 ~~aiIlaaG~g~Rl~~~t~~~pK~l-~pv-~g~pii~~~l-----~~l~~~g--i-~~i~vv~~-~~~~~i~~~~~~ 74 (302)
T PRK13389 9 KKAVIPVAGLGTRMLPATKAIPKEM-LPL-VDKPLIQYVV-----NECIAAG--I-TEIVLVTH-SSKNSIENHFDT 74 (302)
T ss_pred eEEEEECCcCCccCCCccCCCCcee-eEE-CCEEHHHHHH-----HHHHHCC--C-CEEEEEeC-CCHHHHHHHHcc
Confidence 34688899999994 2 238873 333 4678876654 4554422 1 12445555 456788999964
No 111
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=63.31 E-value=6.5 Score=42.23 Aligned_cols=60 Identities=3% Similarity=-0.007 Sum_probs=36.6
Q ss_pred EEEEccCCCCCCC---C-CCCcccccCCCCc-chHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 007117 358 MVLVVHNSEEGNE---C-DPHSVVSESTANK-SLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 428 (617)
Q Consensus 358 vvllAGG~GtRg~---~-~pK~~~i~l~s~k-slf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~ 428 (617)
+|+||||.|||+. . -||.+ +++ -++ ++++... +.+.+.+ .. .++|.|.. ..+...++|.+
T Consensus 1 aiILAaG~gtRl~plt~~~pK~l-lpv-~g~~pli~~~l-----~~l~~~g--i~-~i~iv~~~-~~~~i~~~~~~ 65 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPA-VPF-GGKYRIIDFPL-----SNCINSG--IR-RIGVLTQY-KSHSLNRHIQR 65 (361)
T ss_pred CEEeCCCCCCccchhhhCCcccc-cee-cceeeEeeehh-----hhhhhcC--Cc-eEEEEecc-ChHHHHHHHHh
Confidence 3899999999943 2 39983 344 345 6766544 4444322 11 35666664 44568888875
No 112
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=61.87 E-value=6.5 Score=39.14 Aligned_cols=32 Identities=9% Similarity=0.093 Sum_probs=22.2
Q ss_pred EEEEccCCCCCCC--C--CCCcccccCCCCcchHHHHH
Q 007117 358 MVLVVHNSEEGNE--C--DPHSVVSESTANKSLALLQT 391 (617)
Q Consensus 358 vvllAGG~GtRg~--~--~pK~~~i~l~s~kslf~l~~ 391 (617)
+|+||||.|||.. + -||.+ +++ .++++++...
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~l-l~i-~g~pli~~~l 36 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPL-IEV-DGKPMIEWVI 36 (231)
T ss_pred CEEECCcCCccccccCCCCCcee-eEE-CCEEHHHHHH
Confidence 5899999999942 2 38983 233 4678877655
No 113
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=60.69 E-value=17 Score=40.29 Aligned_cols=61 Identities=8% Similarity=0.085 Sum_probs=36.0
Q ss_pred ceEEEEEccCCCCCCC-CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHH
Q 007117 355 KKAMVLVVHNSEEGNE-CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLF 426 (617)
Q Consensus 355 kvavvllAGG~GtRg~-~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff 426 (617)
+..+|+||||.|||.. ..||.+ +++ .++++++... +++.+.+ . -.++|.++.. .+.+.+++
T Consensus 2 ~~~avIlAaG~g~Rl~~~~pK~l-l~i-~Gkpli~~~l-----~~l~~~g--i-~~iivvv~~~-~~~i~~~~ 63 (458)
T PRK14354 2 NRYAIILAAGKGTRMKSKLPKVL-HKV-CGKPMVEHVV-----DSVKKAG--I-DKIVTVVGHG-AEEVKEVL 63 (458)
T ss_pred CceEEEEeCCCCcccCCCCChhh-CEe-CCccHHHHHH-----HHHHhCC--C-CeEEEEeCCC-HHHHHHHh
Confidence 3568999999999954 459983 344 4678876654 4444321 1 1345555543 34455554
No 114
>KOG0887 consensus 60S ribosomal protein L35A/L37 [Translation, ribosomal structure and biogenesis]
Probab=60.58 E-value=12 Score=33.65 Aligned_cols=50 Identities=22% Similarity=0.388 Sum_probs=37.4
Q ss_pred ceEEEEecCCCCHHHHhcccCCe-EEEeCCCCCCCCCCcccHhhccCcEEEEccCCeEeEEEEEecc
Q 007117 88 KSWILTFEGIDTVEQARPLVGST-LLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFN 153 (617)
Q Consensus 88 ~~~ivkfegid~re~Ae~L~G~~-l~v~~~~lp~L~e~EfY~~DLIG~~V~d~~~g~~lG~V~dV~~ 153 (617)
+..|||++|++++|+|+-+.|.. +||-++. |+-. |-+.+ .+.|+|+-..-
T Consensus 30 ~t~llkIEGv~skeEa~fYlGkR~~yvYKa~-~~~~----------~~k~R-----vIWGkVTr~HG 80 (111)
T KOG0887|consen 30 NTSLLKIEGVYSKEEASFYLGKRCVYVYKAK-PEVR----------GSKTR-----VIWGKVTRPHG 80 (111)
T ss_pred CcEEEEEecccchhhhheeecCcEEEEEecC-CCCC----------CceEE-----EEEEEEecccC
Confidence 46799999999999999999998 8888887 2222 33332 35788887754
No 115
>PTZ00041 60S ribosomal protein L35a; Provisional
Probab=60.33 E-value=9.5 Score=35.05 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=26.6
Q ss_pred eEEEEEEeccceeeeeEEEEeecCCcccccc
Q 007117 26 FVDVGYVYSVHGLQGEISVKPSTDFPELRFT 56 (617)
Q Consensus 26 ~v~IG~I~~~hGlkGevkv~~~td~p~~~f~ 56 (617)
.+..|+|.++||-.|.|+.+.-...|...+.
T Consensus 78 RviwGKVtR~HGnsGvVrAkF~~nLPp~A~G 108 (120)
T PTZ00041 78 RAIWGKITRPHGNSGVVRARFNKNLPPKAIG 108 (120)
T ss_pred eEEEEEEEcccCCCcEEEEEeCCCCChHHcC
Confidence 5889999999999999999988887775543
No 116
>PLN02917 CMP-KDO synthetase
Probab=53.96 E-value=35 Score=36.06 Aligned_cols=33 Identities=6% Similarity=-0.032 Sum_probs=24.2
Q ss_pred ceEEEEEccCCCCCCCCCCCcccccCCCCcchHHHHH
Q 007117 355 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQT 391 (617)
Q Consensus 355 kvavvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~ 391 (617)
++++|++|+|.++|.. .|.+ .++ .++++++...
T Consensus 47 ~i~aIIpA~G~SsR~~--~K~L-~~i-~GkPLL~~vi 79 (293)
T PLN02917 47 RVVGIIPARFASSRFE--GKPL-VHI-LGKPMIQRTW 79 (293)
T ss_pred cEEEEEecCCCCCCCC--CCCe-eeE-CCEEHHHHHH
Confidence 7899999999999953 3652 233 4788877655
No 117
>PRK04337 50S ribosomal protein L35Ae; Validated
Probab=53.92 E-value=14 Score=32.10 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=24.8
Q ss_pred eEEEEEEeccceeeeeEEEEeecCCcccc
Q 007117 26 FVDVGYVYSVHGLQGEISVKPSTDFPELR 54 (617)
Q Consensus 26 ~v~IG~I~~~hGlkGevkv~~~td~p~~~ 54 (617)
.+..|+|.++||-.|.|+.+.....|...
T Consensus 51 rviwGKItR~HGnsGvVrAkF~~nLP~~a 79 (87)
T PRK04337 51 NKYVGKIVRVHGNRGEVRARFKPGLPGQA 79 (87)
T ss_pred CEEEEEEEeeeCCCceEEEEECCCCChHH
Confidence 48899999999999999999877776643
No 118
>COG3881 PRC-barrel domain containing protein [General function prediction only]
Probab=53.12 E-value=9.9 Score=36.53 Aligned_cols=68 Identities=24% Similarity=0.324 Sum_probs=45.1
Q ss_pred HhhccCcEEEEccCCeEeEEEEEeccCCC-ceEEEEEeccccccccCcccccccCCCCCCcEEEEecccCccceeecCCC
Q 007117 128 TRDLVGMRVVMKETGELVGTVVNVFNSGA-NDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 206 (617)
Q Consensus 128 ~~DLIG~~V~d~~~g~~lG~V~dV~~~ga-~dllvV~~~~~~~~~~~~~~~~~~~~~~~gke~LIPfv~~~V~~IDle~~ 206 (617)
.++|+|+.||+..+|+.||.|.||+=+.. +-++-+... +.+ --.+..++|+=+ -+.+-.+
T Consensus 4 ~~EleG~pVys~~tg~~lg~V~Dvif~~~gdrvl~flvn-------kgg--------wfh~h~~lp~~~----i~Sig~k 64 (176)
T COG3881 4 SRELEGAPVYSTKTGEKLGAVDDVIFNFSGDRVLGFLVN-------KGG--------WFHKHCCLPVKN----IVSIGSK 64 (176)
T ss_pred chhhcCCceEEecccccccceeeEEEecCCCeEEEEEEe-------cCc--------EEeeeeeeeecc----eeeeccc
Confidence 36899999999888999999999975544 445544321 010 013568899754 2444567
Q ss_pred EEEEeCCC
Q 007117 207 EMQITPPK 214 (617)
Q Consensus 207 ~I~V~~pe 214 (617)
.|.+..|.
T Consensus 65 ~Imi~vp~ 72 (176)
T COG3881 65 MIMIYVPY 72 (176)
T ss_pred eEEEeccc
Confidence 77777765
No 119
>PF14969 DUF4508: Domain of unknown function (DUF4508)
Probab=47.21 E-value=15 Score=32.64 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=28.9
Q ss_pred ccccccccC-CCCHHHHHHHHHHHhcCCHHHHHHHHHh
Q 007117 258 QQHVFHGFR-FGEKYQTSLLANHIVGINSKLLQQALQN 294 (617)
Q Consensus 258 Q~HLl~~~~-~l~~~ek~~L~~ql~~iD~~~l~~~~~~ 294 (617)
|-+||+-|- .=++++|+.|+++|+.+|.....++++.
T Consensus 59 qlkLf~qWf~~W~~~ern~fl~~Lee~D~~f~~k~~~~ 96 (98)
T PF14969_consen 59 QLKLFRQWFPKWSEEERNKFLEQLEEIDPDFVAKFYQE 96 (98)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHhChHHHHHHHHh
Confidence 445665554 3579999999999999999888887764
No 120
>TIGR02888 spore_YlmC_YmxH sporulation protein, YlmC/YmxH family. Members of this family belong to the broader family of PRC-barrel domain proteins (see Pfam model pfam05239), but are found only in endospore-forming bacteria of the Firmicutes lineage. Most such species have exactly two members of this family and all have at least one; the function is unknown. One of two members from Bacillus subtilis, YmxH, is strongly induced by the mother cell-specific sigma-E factor.
Probab=46.38 E-value=16 Score=30.90 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=26.7
Q ss_pred cHhhccCcEEEEccCCeEeEEE--EEec-c--CCCceEEEE
Q 007117 127 YTRDLVGMRVVMKETGELVGTV--VNVF-N--SGANDLLHV 162 (617)
Q Consensus 127 Y~~DLIG~~V~d~~~g~~lG~V--~dV~-~--~ga~dllvV 162 (617)
.++||.|.+|++-.+|+.+|.| .|+. + +|.---++|
T Consensus 1 r~seL~~keVIni~~G~~lG~v~~~Dl~iD~~~G~I~aiIi 41 (76)
T TIGR02888 1 RLSDLRGKEIINVNDGERLGVIGNIDLEIDEEDGRILSLII 41 (76)
T ss_pred CHHHccCCCEEECCCCcEeeccccceEEEECCCCEEEEEEE
Confidence 3689999999998899999999 6763 3 444334444
No 121
>PRK13149 H/ACA RNA-protein complex component Gar1; Reviewed
Probab=44.95 E-value=40 Score=28.25 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=27.6
Q ss_pred cCcEEEEccCCeEeEEEEEeccCCCceEEEEEec
Q 007117 132 VGMRVVMKETGELVGTVVNVFNSGANDLLHVMCY 165 (617)
Q Consensus 132 IG~~V~d~~~g~~lG~V~dV~~~ga~dllvV~~~ 165 (617)
+|..|+| ++.+.+|+|.||+-.-.+..+.|+..
T Consensus 26 ~n~~V~~-~~~~~IGkV~dIfGPV~~pY~~Vk~~ 58 (73)
T PRK13149 26 IGSVVYD-KKLKKIGKVVDVFGPVKEPYVLVKPD 58 (73)
T ss_pred CCCEeEC-CCCCEeEEEEEEECCCCCcEEEEEeC
Confidence 4789996 67889999999998877888888863
No 122
>PF01247 Ribosomal_L35Ae: Ribosomal protein L35Ae; InterPro: IPR001780 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The ribosomal L35A eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of: Vertebrate L35A. Caenorhabditis elegans L35A (F10E7.7). Saccharomyces cerevisiae L37A/L37B (Rp47). Plant L35A. Pyrococcus woesei L35A homologue []. These proteins have 87 to 110 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_j 2LP6_A 1SQR_A 4A18_H 4A1D_H 4A19_H 4A1B_H 3IZS_j.
Probab=44.25 E-value=21 Score=31.61 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=25.4
Q ss_pred CCeEEEEEEeccceeeeeEEEEeecCCccccc
Q 007117 24 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRF 55 (617)
Q Consensus 24 ~~~v~IG~I~~~hGlkGevkv~~~td~p~~~f 55 (617)
.-.+..|+|.++||-.|-|+.+.....|...+
T Consensus 57 k~r~iwGkV~r~HGnsGvVrAkF~~nLP~~a~ 88 (95)
T PF01247_consen 57 KGRVIWGKVTRPHGNSGVVRAKFKKNLPPQAI 88 (95)
T ss_dssp CSEEEEEEEEEESTTTTEEEEEESS--STTGC
T ss_pred cEeEEEEEEEeEEcCCCEEEEEeCCCCChHHc
Confidence 45688999999999999999998877776543
No 123
>PF13106 DUF3961: Domain of unknown function (DUF3961)
Probab=43.65 E-value=13 Score=27.63 Aligned_cols=15 Identities=33% Similarity=0.990 Sum_probs=12.6
Q ss_pred CCCCCCC---CCcEEEEe
Q 007117 429 NDHFAFD---SKKVWFLE 443 (617)
Q Consensus 429 ~~~FGl~---~~~v~~f~ 443 (617)
|+|||++ .+||+||.
T Consensus 4 n~~FGie~~~sdqIWFYG 21 (40)
T PF13106_consen 4 NEWFGIEECKSDQIWFYG 21 (40)
T ss_pred hhhcCccccccccEEEee
Confidence 6899997 67999884
No 124
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=40.31 E-value=90 Score=31.14 Aligned_cols=142 Identities=11% Similarity=0.066 Sum_probs=75.1
Q ss_pred EEEEccCCCCCCCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccc-hHHHHHHHHHCCCCCCCC
Q 007117 358 MVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALE-MQMLEKLFLDNDHFAFDS 436 (617)
Q Consensus 358 vvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t-~~~T~~ff~~~~~FGl~~ 436 (617)
+|+||||.++|.+ .|.+ .++ .++++++... +.+.+.+ .+ -.++|-|+..- ++...+++... |.
T Consensus 2 aiIlA~G~S~R~~--~K~l-l~l-~Gkpli~~~i-----~~l~~~~-~~-~~ivVv~~~~~~~~~i~~~~~~~---~v-- 65 (233)
T cd02518 2 AIIQARMGSTRLP--GKVL-KPL-GGKPLLEHLL-----DRLKRSK-LI-DEIVIATSTNEEDDPLEALAKKL---GV-- 65 (233)
T ss_pred EEEeeCCCCCCCC--CCcc-ccc-CCccHHHHHH-----HHHHhCC-CC-CeEEEECCCCcccHHHHHHHHHc---CC--
Confidence 4789999999963 4763 233 5788876544 3333211 12 24667676543 25666666532 21
Q ss_pred CcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCcccccccHH
Q 007117 437 KKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIGNSM 516 (617)
Q Consensus 437 ~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~~~DP~ 516 (617)
. ++... . . +....+ +..+...+.+++.+...|.+++ +|-
T Consensus 66 ---~--------~v~~~-------~---------------~-~~l~~~-----~~~~~~~~~d~vli~~~D~P~i--~~~ 104 (233)
T cd02518 66 ---K--------VFRGS-------E---------------E-DVLGRY-----YQAAEEYNADVVVRITGDCPLI--DPE 104 (233)
T ss_pred ---e--------EEECC-------c---------------h-hHHHHH-----HHHHHHcCCCEEEEeCCCCCCC--CHH
Confidence 1 11111 0 0 111111 1122334678999999999999 555
Q ss_pred HHHHHH----HcCCcEEEEEeeccCCccccccceeeHHHHHHhhh
Q 007117 517 FLGFVK----SCGADIGFQISEYAKHSEERFNTMLSMNVMKKLTN 557 (617)
Q Consensus 517 flG~~~----~~~~d~~~kvV~k~~~~~E~~~h~fs~~fl~~~~~ 557 (617)
.+-.++ .++.++..-...+. .|---...+|+..++.++..
T Consensus 105 ~i~~li~~~~~~~~~~~~~~~~~g-~Pv~~~~~~~~~~~~~~l~~ 148 (233)
T cd02518 105 IIDAVIRLFLKSGADYTSNTLPRT-YPDGLDVEVFTRDALERAAA 148 (233)
T ss_pred HHHHHHHHHHhCCCCEEecCCCCC-CCCceEEEEEEHHHHHHHHH
Confidence 444333 45666664111122 22222246798888887754
No 125
>PF09939 DUF2171: Uncharacterized protein conserved in bacteria (DUF2171); InterPro: IPR018684 This family of various hypothetical prokaryotic proteins has no known function.
Probab=39.29 E-value=1.5e+02 Score=24.68 Aligned_cols=56 Identities=30% Similarity=0.408 Sum_probs=37.5
Q ss_pred CcEEEEccCCeEeEEEEEeccCCCceEEEEEeccccccccCcccccccCCCCCCcEEEEecccCccceeecCCCEEEEeC
Q 007117 133 GMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREMQITP 212 (617)
Q Consensus 133 G~~V~d~~~g~~lG~V~dV~~~ga~dllvV~~~~~~~~~~~~~~~~~~~~~~~gke~LIPfv~~~V~~IDle~~~I~V~~ 212 (617)
+|+|+. .+|..+|+|..+. | |-+.+... ++...|..-+||.- +|.+|| +.++.+..
T Consensus 5 hmeVi~-sdG~~vGtVDhve--G--d~IKLtk~---------------d~~~~g~HH~IPls--~V~~Vd--~~~V~L~~ 60 (67)
T PF09939_consen 5 HMEVIG-SDGVHVGTVDHVE--G--DRIKLTKD---------------DSGHDGQHHYIPLS--WVDSVD--DDKVHLSK 60 (67)
T ss_pred CCEEEe-CCCCEEEEEeeEe--C--CEEEEecc---------------CCCCCCcceEEehh--HheeEc--CCEEEEcC
Confidence 789995 6899999999984 4 44333311 12236788999985 677776 55666544
No 126
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=38.68 E-value=25 Score=31.59 Aligned_cols=35 Identities=6% Similarity=0.027 Sum_probs=25.1
Q ss_pred HHHHHHHHcCccccccccCCCCHHHHHHHHHHHhc
Q 007117 248 AAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVG 282 (617)
Q Consensus 248 ~l~~~L~~~gQ~HLl~~~~~l~~~ek~~L~~ql~~ 282 (617)
.-++.+.+.-++.+-+-+++|+++|+++|.++|+.
T Consensus 70 ~Ye~a~~~~~~~~lqkRle~l~~eE~~~L~~eiee 104 (104)
T PF11460_consen 70 DYEEAVDQLTNEELQKRLEELSPEELEALQAEIEE 104 (104)
T ss_pred HHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence 33444444445566667789999999999999863
No 127
>COG2451 Ribosomal protein L35AE/L33A [Translation, ribosomal structure and biogenesis]
Probab=38.13 E-value=38 Score=29.88 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=25.2
Q ss_pred CeEEEEEEeccceeeeeEEEEeecCCccccc
Q 007117 25 DFVDVGYVYSVHGLQGEISVKPSTDFPELRF 55 (617)
Q Consensus 25 ~~v~IG~I~~~hGlkGevkv~~~td~p~~~f 55 (617)
..+.=|+|+++||-.|-|+++..-..|...|
T Consensus 57 G~Vi~G~V~R~HGnsGaVrarF~~~LP~qa~ 87 (100)
T COG2451 57 GRVIKGKVVRTHGNSGAVRARFERNLPGQAL 87 (100)
T ss_pred CcEEEEEEEEecCCcceEEEEecCCCCchhc
Confidence 4788999999999999999987666655433
No 128
>COG3881 PRC-barrel domain containing protein [General function prediction only]
Probab=37.92 E-value=38 Score=32.70 Aligned_cols=68 Identities=16% Similarity=0.235 Sum_probs=46.5
Q ss_pred eEEEEecCCCCHHHHhcccCCeEEEeCCCCCCCCCCcccHhhccCcEEEEccCCeEeEEEEEec---cCCCceEEEE
Q 007117 89 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVF---NSGANDLLHV 162 (617)
Q Consensus 89 ~~ivkfegid~re~Ae~L~G~~l~v~~~~lp~L~e~EfY~~DLIG~~V~d~~~g~~lG~V~dV~---~~ga~dllvV 162 (617)
...+.+..|-++-+ .+.-+++|.+..-...+. +..++..+++..+.+|+.||.|+||+ .+|--.=|++
T Consensus 50 h~~lp~~~i~Sig~----k~Imi~vp~~~~~~~~ns--~~ye~m~mk~~lt~dG~iLGmveDVyFdek~gkIvgyev 120 (176)
T COG3881 50 HCCLPVKNIVSIGS----KMIMIYVPYKGSFIRFNS--FTYEIMNMKVILTYDGTILGMVEDVYFDEKTGKIVGYEV 120 (176)
T ss_pred eeeeeecceeeecc----ceEEEeccccceecccCc--hhhHhhcCceEeccCCcEeeeeeEEEEeccCCcEEEEEe
Confidence 34677887777655 345677887776555555 55677788887778899999999996 3443334444
No 129
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=36.21 E-value=42 Score=33.72 Aligned_cols=28 Identities=11% Similarity=0.037 Sum_probs=17.7
Q ss_pred EEEEccCCCCCCCCCCCcccccCCCCcchHHHHH
Q 007117 358 MVLVVHNSEEGNECDPHSVVSESTANKSLALLQT 391 (617)
Q Consensus 358 vvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~ 391 (617)
.++||.|.|||.. |+...++|+|+++..
T Consensus 3 AIIlAAG~gsR~~------plT~~tpK~LlkV~g 30 (231)
T COG4750 3 AIILAAGLGSRFV------PLTQSTPKSLLKVNG 30 (231)
T ss_pred eEEEecccccccc------cccccCChHHHHhcC
Confidence 5788999999952 333344555555443
No 130
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=35.28 E-value=6.1e+02 Score=27.44 Aligned_cols=128 Identities=11% Similarity=0.135 Sum_probs=75.9
Q ss_pred cccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCcccccccHHHHHHHHHcCCcEEEEEeeccCC-----------cc
Q 007117 472 QAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIGNSMFLGFVKSCGADIGFQISEYAKH-----------SE 540 (617)
Q Consensus 472 ~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~~~DP~flG~~~~~~~d~~~kvV~k~~~-----------~~ 540 (617)
-+|.|.||-.-.+++ ...+---..+++.|-|-+-.---+-++-.|...+..+...+.+-+.. |.
T Consensus 86 ~~plGtaGgLyhFrd-----qIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~ 160 (407)
T KOG1460|consen 86 DNPLGTAGGLYHFRD-----QILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPS 160 (407)
T ss_pred CCCCCcccceeehhh-----HHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeeeecCC
Confidence 578998776554543 45555677999999998776444678899988888887666543310 11
Q ss_pred --c----------------ccc-ceeeHHHHHHhhhhhccccc-cccccCCCcccccCCCcceecCCCCCeeEEEEEEec
Q 007117 541 --E----------------RFN-TMLSMNVMKKLTNHINKLEF-YATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYS 600 (617)
Q Consensus 541 --E----------------~~~-h~fs~~fl~~~~~~~~~L~~-H~a~Kkip~~~~~~~~g~~v~P~~pN~~K~E~fifD 600 (617)
| +|+ ++|+-+-++.+.+.+++-.- --..|..|-+ .|.-..-+.||+=||.
T Consensus 161 t~evlHYveKPsTfvSd~InCGvYlF~~eif~~i~~v~~q~~~~~~~~~~~~~l----------~~g~~d~irLeqDvls 230 (407)
T KOG1460|consen 161 TGEVLHYVEKPSTFVSDIINCGVYLFTPEIFNAIAEVYRQRQDLLEVEKDLPLL----------QPGPADFIRLEQDVLS 230 (407)
T ss_pred cCceEEeecCcchhhhcccceeEEEecHHHHHHHHHHHHHHHhhhhhhhccccc----------CCCccceEEeechhhh
Confidence 1 122 66898888887765432100 1122333322 2222235899987775
Q ss_pred ccCCCCCCceEEEEec
Q 007117 601 CLNACSLDKVCVMEIT 616 (617)
Q Consensus 601 ~f~~~~~~~~~~~ev~ 616 (617)
-+ |...+....|..
T Consensus 231 pL--ag~k~lY~y~t~ 244 (407)
T KOG1460|consen 231 PL--AGSKQLYAYETT 244 (407)
T ss_pred hh--cCCCceEEEecc
Confidence 44 443466666543
No 131
>COG3277 GAR1 RNA-binding protein involved in rRNA processing [Translation, ribosomal structure and biogenesis]
Probab=33.07 E-value=78 Score=28.26 Aligned_cols=32 Identities=22% Similarity=0.225 Sum_probs=26.5
Q ss_pred cCcEEEEccCCeEeEEEEEeccCCCceEEEEEe
Q 007117 132 VGMRVVMKETGELVGTVVNVFNSGANDLLHVMC 164 (617)
Q Consensus 132 IG~~V~d~~~g~~lG~V~dV~~~ga~dllvV~~ 164 (617)
+|..|+| .+++.+|.|.||+---.+..+.|+.
T Consensus 27 l~~~V~~-~~~k~IG~V~dVfGPv~~PY~~Vkp 58 (98)
T COG3277 27 LNAPVYD-ANLKRIGKVVDVFGPVDEPYILVKP 58 (98)
T ss_pred CCCeeEe-cCCCEEEEEEEEEccCCCCEEEEec
Confidence 3889996 6778899999999877777778875
No 132
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=27.27 E-value=86 Score=33.16 Aligned_cols=62 Identities=18% Similarity=0.168 Sum_probs=32.7
Q ss_pred hhHHHHHcCceEEEEEeCCcccc----cccHHHHHHHHHcCCcEEEEEeeccCCccccc-------cceeeHHHHHH
Q 007117 489 IIKNLDELGVEYIQICTANPRNA----IGNSMFLGFVKSCGADIGFQISEYAKHSEERF-------NTMLSMNVMKK 554 (617)
Q Consensus 489 ~l~~l~~~Gi~yi~v~~vDN~l~----~~DP~flG~~~~~~~d~~~kvV~k~~~~~E~~-------~h~fs~~fl~~ 554 (617)
+++...+-|-.-|-+-.|..--+ .+|| |-....+.-.....|+|- .+++.- -++|+-+....
T Consensus 145 mi~~ye~~g~svi~v~ev~~e~v~kYGvi~~---g~~~~~~~~~v~~~VEKP-~~~~APSnlai~GRYil~p~IFd~ 217 (291)
T COG1210 145 MIELYEETGGSVIGVEEVPPEDVSKYGVIDP---GEPVEKGVYKVKGMVEKP-KPEEAPSNLAIVGRYVLTPEIFDI 217 (291)
T ss_pred HHHHHHHhCCcEEEEEECCHHHCcccceEec---CccccCCeEEEEEEEECC-CCCCCCcceeeeeeeecCHHHHHH
Confidence 34455555776666666643222 1332 445556655566778887 355431 25566644433
No 133
>COG1588 POP4 RNase P/RNase MRP subunit p29 [Translation, ribosomal structure and biogenesis]
Probab=26.09 E-value=2.3e+02 Score=25.11 Aligned_cols=78 Identities=21% Similarity=0.235 Sum_probs=43.3
Q ss_pred cccHhhccCcEEEEcc--CCe---EeEEEEEeccCCCceEEEEEeccccccccCcccccccCCCCCCcEEEEecccCccc
Q 007117 125 EFYTRDLVGMRVVMKE--TGE---LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVP 199 (617)
Q Consensus 125 EfY~~DLIG~~V~d~~--~g~---~lG~V~dV~~~ga~dllvV~~~~~~~~~~~~~~~~~~~~~~~gke~LIPfv~~~V~ 199 (617)
..|+++|||+.|.--. +-. .=|.|++= .. ..|+|.. ++++..||---.. =
T Consensus 9 ~i~~hEliGl~vrVv~s~~~s~vGI~G~VVdE---Tk-NtLvi~t--------------------~~~~~~VpK~~~v-f 63 (95)
T COG1588 9 NIIRHELIGLEVRVVRSTNPSYVGIEGRVVDE---TK-NTLVIDT--------------------GSREKVVPKDGAV-F 63 (95)
T ss_pred CcChHHhcCcEEEEEecCCCCccceeEEEEee---ec-cEEEEEC--------------------CCceEEEecCcEE-E
Confidence 5899999999986321 212 34666553 23 3567763 2257777754333 2
Q ss_pred eeecCCCEEEEeCCCCcccccCCcchhhhhH
Q 007117 200 IVDMNGREMQITPPKGLLELNLRTDERSKKE 230 (617)
Q Consensus 200 ~IDle~~~I~V~~peGLLel~~~~~~~~k~~ 230 (617)
++...++.. |+.+..+| +.+-+++.|+.
T Consensus 64 ef~~~~G~~-vkVdG~lL--~~rPE~Rlk~~ 91 (95)
T COG1588 64 EFEGPDGEK-VKVDGRLL--LGRPEDRLKKR 91 (95)
T ss_pred EEEcCCCcE-EEEcchhh--hcCHHHHHhhh
Confidence 556554433 33334444 45667777764
No 134
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=24.22 E-value=53 Score=33.90 Aligned_cols=82 Identities=6% Similarity=0.111 Sum_probs=49.7
Q ss_pred HhchhhhcCCceEEEEEccCCCCCCCCCCCc-----ccccCCCCcchHHHHH----H-HHhhHHHHhhcCCCcccEEEeC
Q 007117 345 KKGNHLVSEGKKAMVLVVHNSEEGNECDPHS-----VVSESTANKSLALLQT----L-LSDDQRFVKIENRASMPLVLVL 414 (617)
Q Consensus 345 ~~Gl~~i~~gkvavvllAGG~GtRg~~~pK~-----~~i~l~s~kslf~l~~----~-i~~~~~l~~~~~~~~ip~~IMT 414 (617)
..+.++-++|++..+++.||.++.+...+.. ...++|...-+.+-.. + +.+..++.. .=+++|.|
T Consensus 71 ~~A~~LYk~gk~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp~e~Ii~e~~s~nT~en~~~a~~i~~-----~~~~iIVT 145 (239)
T PRK10834 71 QGAINAYNSGKVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVFD-----TNDFIIIT 145 (239)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHHHHHHcCCCHHHEEecCCCCCHHHHHHHHHHHhC-----CCCEEEEC
Confidence 4588889999999999999987554444432 1223333221111110 0 111122222 12689999
Q ss_pred CccchHHHHHHHHHCCCCCC
Q 007117 415 PALEMQMLEKLFLDNDHFAF 434 (617)
Q Consensus 415 S~~t~~~T~~ff~~~~~FGl 434 (617)
|........-.|++ +|+
T Consensus 146 q~fHm~RA~~ia~~---~Gi 162 (239)
T PRK10834 146 QRFHCERALFIALH---MGI 162 (239)
T ss_pred CHHHHHHHHHHHHH---cCC
Confidence 99999999999986 476
No 135
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=23.75 E-value=2e+02 Score=32.25 Aligned_cols=131 Identities=12% Similarity=0.137 Sum_probs=69.6
Q ss_pred ceEEEEEccCCCCCCCCC-CCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCC
Q 007117 355 KKAMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 433 (617)
Q Consensus 355 kvavvllAGG~GtRg~~~-pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FG 433 (617)
...+|+||-|+|||=-++ ||.+ =+ ..+|++++.-. ....+++ .-.+-+++ ..-.+..++-+.+..
T Consensus 2 ~~~~vILAAGkGTRMkS~lPKVL-H~-vaGkpMl~hVi-----~~a~~l~-~~~i~vVv---Gh~ae~V~~~~~~~~--- 67 (460)
T COG1207 2 SLSAVILAAGKGTRMKSDLPKVL-HP-VAGKPMLEHVI-----DAARALG-PDDIVVVV---GHGAEQVREALAERD--- 67 (460)
T ss_pred CceEEEEecCCCccccCCCcccc-hh-ccCccHHHHHH-----HHHhhcC-cceEEEEE---cCCHHHHHHHhcccc---
Confidence 467899999999995444 9984 11 26788755432 2222211 11222222 344566666665431
Q ss_pred CCCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHcCce-EEEEEeCCccccc
Q 007117 434 FDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVE-YIQICTANPRNAI 512 (617)
Q Consensus 434 l~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~-yi~v~~vDN~l~~ 512 (617)
++.|+.|.. |-|.|.-..+. + +...++.+ .+.|.+=|-+|..
T Consensus 68 ----~v~~v~Q~e---------------------------qlGTgHAV~~a-----~-~~l~~~~~g~vLVl~GD~PLit 110 (460)
T COG1207 68 ----DVEFVLQEE---------------------------QLGTGHAVLQA-----L-PALADDYDGDVLVLYGDVPLIT 110 (460)
T ss_pred ----CceEEEecc---------------------------cCChHHHHHhh-----h-hhhhcCCCCcEEEEeCCcccCC
Confidence 567777754 12222222111 1 22233444 5566666666663
Q ss_pred ccH--HHHHHHHHcCCcEEEEEeecc
Q 007117 513 GNS--MFLGFVKSCGADIGFQISEYA 536 (617)
Q Consensus 513 ~DP--~flG~~~~~~~d~~~kvV~k~ 536 (617)
.+. .++.++...++.++.-+..-.
T Consensus 111 ~~TL~~L~~~~~~~~~~~tvLt~~~~ 136 (460)
T COG1207 111 AETLEELLAAHPAHGAAATVLTAELD 136 (460)
T ss_pred HHHHHHHHHhhhhcCCceEEEEEEcC
Confidence 222 467777777777776665554
No 136
>PRK11058 GTPase HflX; Provisional
Probab=22.98 E-value=3e+02 Score=30.84 Aligned_cols=50 Identities=10% Similarity=-0.005 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHcCccccccccCCCCHHHHHHHHHHHhc--CCH-HHHHHHHHh
Q 007117 244 KRLIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVG--INS-KLLQQALQN 294 (617)
Q Consensus 244 ~~~~~l~~~L~~~gQ~HLl~~~~~l~~~ek~~L~~ql~~--iD~-~~l~~~~~~ 294 (617)
..+++|++...+.+-. ++=|-++||+.|..+|-+.+.- +|- ..+-..|..
T Consensus 61 gk~~e~~~~~~~~~~~-~vi~~~~lsp~q~~nle~~~~~~v~DR~~lil~IF~~ 113 (426)
T PRK11058 61 GKAVEIAEAVKATGAS-VVLFDHALSPAQERNLERLCECRVIDRTGLILDIFAQ 113 (426)
T ss_pred cHHHHHHHHHHhcCCC-EEEECCCCCHHHHHHHHHHHCCeEecchhHHHHHHHH
Confidence 4556777766665544 5556689999999999988753 452 245555553
No 137
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=22.73 E-value=1.4e+02 Score=27.50 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=29.6
Q ss_pred eEEEEEccCCCCCCCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHH
Q 007117 356 KAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 427 (617)
Q Consensus 356 vavvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~ 427 (617)
-|+|.|.||.|| + -++.. + -.+.+.+...++|++++.-..--+...++++
T Consensus 55 da~I~lPGG~GT--------l----------~El~~-~---~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~ 104 (133)
T PF03641_consen 55 DAFIALPGGIGT--------L----------DELFE-A---LTLMQLGRHNKVPIILLNIDGFWDPLLEFLD 104 (133)
T ss_dssp SEEEEES-SHHH--------H----------HHHHH-H---HHHHHTTSSTS-EEEEEECGGCCHHHHHHHH
T ss_pred CEEEEEecCCch--------H----------HHHHH-H---HHHHhhccccCCCEEEeCCcchHHHHHHHHH
Confidence 689999999998 1 12211 1 1222334445679999997766666777773
No 138
>KOG0887 consensus 60S ribosomal protein L35A/L37 [Translation, ribosomal structure and biogenesis]
Probab=21.28 E-value=2.1e+02 Score=25.82 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=26.4
Q ss_pred CCeEEEEEEeccceeeeeEEEEeecCCccccc
Q 007117 24 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRF 55 (617)
Q Consensus 24 ~~~v~IG~I~~~hGlkGevkv~~~td~p~~~f 55 (617)
.-.+.=|+|.++||--|-|+.+.....|...|
T Consensus 67 k~RvIWGkVTr~HGNsG~VrAkF~~Nlp~Ka~ 98 (111)
T KOG0887|consen 67 KTRVIWGKVTRPHGNSGVVRAKFTSNLPPKAM 98 (111)
T ss_pred eEEEEEEEEecccCCcceEEEEeccCCChhHc
Confidence 55788999999999999999998777665433
Done!