Query 007117
Match_columns 617
No_of_seqs 294 out of 1724
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 17:35:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007117.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007117hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yqc_A UDP-N-acetylglucosamine 100.0 5.7E-73 2E-77 625.0 27.5 347 246-616 6-412 (486)
2 1jv1_A Glcnac1P uridyltransfer 100.0 7.8E-69 2.7E-73 594.1 30.9 347 247-616 4-398 (505)
3 3oc9_A UDP-N-acetylglucosamine 100.0 3.4E-69 1.2E-73 578.6 24.6 262 341-616 21-328 (405)
4 3r3i_A UTP--glucose-1-phosphat 100.0 4.7E-63 1.6E-67 542.4 17.9 325 230-616 34-408 (528)
5 3ogz_A UDP-sugar pyrophosphory 100.0 2.2E-61 7.5E-66 536.8 25.6 328 244-616 7-426 (630)
6 3gue_A UTP-glucose-1-phosphate 100.0 1.2E-58 4.2E-63 504.3 18.2 245 346-616 69-368 (484)
7 2oeg_A UTP-glucose-1-phosphate 100.0 5.1E-49 1.7E-53 434.0 19.5 247 345-616 67-372 (505)
8 2i5k_A UTP--glucose-1-phosphat 100.0 2E-46 6.7E-51 413.6 21.3 321 235-616 3-369 (488)
9 2icy_A Probable UTP-glucose-1- 100.0 1.3E-46 4.5E-51 412.8 17.8 287 282-616 23-352 (469)
10 3h9n_A Ribosome maturation fac 100.0 3.5E-43 1.2E-47 339.9 22.1 173 26-220 2-175 (177)
11 2f1l_A 16S rRNA processing pro 100.0 2.9E-43 9.9E-48 342.9 21.1 167 23-216 17-187 (187)
12 2qgg_A 16S rRNA-processing pro 100.0 1.6E-42 5.3E-47 336.8 19.5 173 20-216 5-182 (182)
13 2dyi_A Probable 16S rRNA-proce 100.0 4.9E-40 1.7E-44 313.6 18.4 156 25-218 2-162 (162)
14 3st8_A Bifunctional protein GL 96.5 0.0078 2.7E-07 66.1 10.6 137 353-536 10-151 (501)
15 3oam_A 3-deoxy-manno-octuloson 96.0 0.045 1.5E-06 54.5 11.7 126 355-534 2-129 (252)
16 3k8d_A 3-deoxy-manno-octuloson 95.2 0.12 4E-06 52.2 11.6 125 355-533 18-144 (264)
17 4ecm_A Glucose-1-phosphate thy 95.0 0.3 1E-05 48.7 13.9 133 354-534 23-159 (269)
18 3tqd_A 3-deoxy-manno-octuloson 94.7 0.25 8.5E-06 49.6 12.1 123 355-533 9-136 (256)
19 1h7e_A 3-deoxy-manno-octuloson 94.6 0.32 1.1E-05 47.4 12.4 123 355-534 2-128 (245)
20 3f1c_A Putative 2-C-methyl-D-e 94.0 0.74 2.5E-05 45.2 13.8 128 355-529 3-138 (246)
21 3ngw_A Molybdopterin-guanine d 93.9 0.87 3E-05 44.0 13.7 132 357-557 2-140 (208)
22 1ezi_A CMP-N-acetylneuraminic 93.8 0.95 3.3E-05 43.5 14.0 127 355-536 4-137 (228)
23 2y6p_A 3-deoxy-manno-octuloson 93.6 0.44 1.5E-05 45.9 11.2 57 355-427 2-58 (234)
24 2waw_A MOBA relate protein; un 93.4 0.79 2.7E-05 42.7 12.2 143 355-556 5-150 (199)
25 3q80_A 2-C-methyl-D-erythritol 93.3 0.17 5.7E-06 50.0 7.6 130 354-536 6-139 (231)
26 2qh5_A PMI, ALGA, mannose-6-ph 93.2 0.15 5.2E-06 52.2 7.4 68 355-434 4-76 (308)
27 3pnn_A Conserved domain protei 93.2 0.21 7.1E-06 51.1 8.4 78 355-445 5-83 (303)
28 1qwj_A Cytidine monophospho-N- 92.8 1.1 3.8E-05 43.3 12.7 127 355-533 3-132 (229)
29 1eys_H Photosynthetic reaction 92.6 0.23 7.8E-06 50.1 7.4 82 107-210 111-211 (259)
30 1fxo_A Glucose-1-phosphate thy 92.0 0.24 8.4E-06 50.4 7.1 70 355-434 2-75 (293)
31 2xwl_A 2-C-methyl-D-erythritol 92.0 0.24 8.1E-06 47.4 6.5 63 355-426 2-65 (223)
32 1vic_A 3-deoxy-manno-octuloson 91.7 0.98 3.3E-05 44.6 10.9 128 355-536 2-131 (262)
33 3brk_X Glucose-1-phosphate ade 91.6 1.2 4.3E-05 47.1 12.3 141 355-532 12-160 (420)
34 3d5n_A Q97W15_sulso; NESG, SSR 91.6 0.1 3.4E-06 49.8 3.3 138 355-556 2-142 (197)
35 1lvw_A Glucose-1-phosphate thy 90.7 0.47 1.6E-05 48.4 7.5 69 356-434 4-76 (295)
36 3rsb_A Adenosylcobinamide-phos 90.3 0.33 1.1E-05 45.6 5.7 128 357-536 2-137 (196)
37 1mc3_A Glucose-1-phosphate thy 90.0 0.33 1.1E-05 49.6 5.8 69 356-434 4-76 (296)
38 3htr_A Uncharacterized PRC-bar 89.8 1.1 3.7E-05 39.8 8.2 72 125-214 14-88 (120)
39 1vgw_A 4-diphosphocytidyl-2C-m 89.2 0.41 1.4E-05 46.0 5.5 64 354-428 5-69 (231)
40 1tzf_A Glucose-1-phosphate cyt 89.0 0.59 2E-05 45.7 6.5 143 356-531 3-155 (259)
41 2vsh_A TARI, 2-C-methyl-D-eryt 88.9 0.65 2.2E-05 44.6 6.7 64 356-428 3-68 (236)
42 1yp2_A Glucose-1-phosphate ade 88.6 2.5 8.5E-05 45.1 11.6 143 356-530 21-168 (451)
43 2wee_A MOBA-related protein; u 88.1 0.7 2.4E-05 43.1 6.1 143 355-556 5-150 (197)
44 3juk_A UDP-glucose pyrophospho 88.1 0.57 2E-05 46.8 5.8 63 356-429 3-69 (281)
45 2yc3_A 2-C-methyl-D-erythritol 88.0 0.61 2.1E-05 44.8 5.7 55 355-418 4-59 (228)
46 1vpa_A 2-C-methyl-D-erythritol 87.5 0.48 1.6E-05 45.7 4.6 55 355-418 13-68 (234)
47 2x65_A Mannose-1-phosphate gua 86.7 0.49 1.7E-05 49.2 4.5 64 357-428 3-71 (336)
48 4fce_A Bifunctional protein GL 86.6 0.68 2.3E-05 49.4 5.7 63 355-428 8-71 (459)
49 2px7_A 2-C-methyl-D-erythritol 86.3 0.44 1.5E-05 46.6 3.6 34 355-391 25-59 (236)
50 2xme_A CTP-inositol-1-phosphat 86.2 1.5 5.3E-05 42.2 7.5 60 355-427 18-77 (232)
51 1i52_A 4-diphosphocytidyl-2-C- 86.2 0.53 1.8E-05 45.6 4.1 53 355-416 7-60 (236)
52 2cu2_A Putative mannose-1-phos 84.0 0.67 2.3E-05 48.2 3.9 54 356-417 3-61 (337)
53 1e5k_A Molybdopterin-guanine d 82.6 1.2 3.9E-05 42.5 4.7 52 355-417 6-57 (201)
54 1hm9_A GLMU, UDP-N-acetylgluco 81.4 5 0.00017 42.8 9.7 60 356-426 12-72 (468)
55 2v0h_A Bifunctional protein GL 80.5 1.3 4.4E-05 47.1 4.7 62 355-427 5-67 (456)
56 4evw_A Nucleoside-diphosphate- 80.2 0.75 2.5E-05 45.7 2.5 32 358-391 2-37 (255)
57 1pm3_A MTH1895; unknown functi 79.4 3.1 0.00011 35.4 5.8 38 125-163 20-61 (97)
58 1jyk_A LICC protein, CTP:phosp 77.9 1.3 4.6E-05 43.7 3.5 61 355-426 25-89 (254)
59 2ux8_A Glucose-1-phosphate uri 77.8 2.2 7.6E-05 42.9 5.2 63 355-428 14-80 (297)
60 1w55_A ISPD/ISPF bifunctional 77.0 2.5 8.7E-05 44.6 5.5 52 355-415 3-55 (371)
61 1rzh_H Reaction center protein 75.5 3.7 0.00013 41.2 5.8 58 129-211 146-206 (260)
62 2wjn_H Reaction center protein 75.2 4.3 0.00015 40.7 6.2 81 107-211 112-211 (258)
63 2e3d_A UTP--glucose-1-phosphat 74.6 3.6 0.00012 41.4 5.7 63 355-428 8-74 (302)
64 4fcu_A 3-deoxy-manno-octuloson 73.5 4.1 0.00014 40.5 5.7 32 356-391 2-33 (253)
65 2pa4_A UTP-glucose-1-phosphate 71.6 3.4 0.00011 42.3 4.7 61 356-427 13-77 (323)
66 2e8b_A Probable molybdopterin- 71.5 1.5 5E-05 41.7 1.8 51 355-417 14-64 (201)
67 3j21_c 50S ribosomal protein L 71.1 3.7 0.00013 34.5 3.9 27 87-113 19-45 (87)
68 1sqr_A 50S ribosomal protein L 71.0 3.9 0.00013 34.8 4.1 27 87-113 19-45 (95)
69 2ggo_A 401AA long hypothetical 65.4 6.8 0.00023 40.8 5.6 58 357-428 2-63 (401)
70 2dpw_A Hypothetical protein TT 64.1 7 0.00024 37.7 5.1 50 355-415 2-54 (232)
71 4a18_H RPL35A; ribosome, eukar 63.7 5.6 0.00019 34.9 3.7 58 88-164 33-91 (113)
72 3izc_j 60S ribosomal protein R 60.3 4.2 0.00014 35.4 2.3 30 87-116 25-55 (107)
73 3iz5_j 60S ribosomal protein L 56.9 6.2 0.00021 34.6 2.7 60 87-164 29-89 (111)
74 1sqr_A 50S ribosomal protein L 47.8 7.5 0.00026 33.1 1.8 30 26-55 51-80 (95)
75 4a18_H RPL35A; ribosome, eukar 46.8 8.6 0.00029 33.7 2.0 31 26-56 71-101 (113)
76 3j21_c 50S ribosomal protein L 46.8 11 0.00038 31.6 2.6 29 27-55 52-80 (87)
77 3iz5_j 60S ribosomal protein L 45.3 10 0.00034 33.2 2.2 33 25-57 68-100 (111)
78 3izc_j 60S ribosomal protein R 40.4 8.6 0.00029 33.4 1.0 32 26-57 65-96 (107)
79 2hvy_B GAR1, small nucleolar R 39.0 32 0.0011 29.7 4.4 32 132-164 33-64 (104)
80 2ey4_C Small nucleolar RNP sim 35.8 30 0.001 28.6 3.6 32 132-164 33-64 (82)
81 3u28_C H/ACA ribonucleoprotein 35.7 98 0.0033 27.1 7.0 33 132-165 53-85 (114)
No 1
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*
Probab=100.00 E-value=5.7e-73 Score=624.98 Aligned_cols=347 Identities=17% Similarity=0.281 Sum_probs=298.2
Q ss_pred HHHHHHHHHHcCccccccccCCCCHHHHHHHHHHHhcC-CHHHHHHHHHhccCCccccchhhhhhhhhhhhhcccccCCC
Q 007117 246 LIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGI-NSKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKISG 324 (617)
Q Consensus 246 ~~~l~~~L~~~gQ~HLl~~~~~l~~~ek~~L~~ql~~i-D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~ 324 (617)
.++|+++|+++||+|||+||++|+++||++|++||+++ |++.++++++.+...++ +. .....++|+|.
T Consensus 6 ~~~l~~~l~~~gQ~hl~~~~~~l~~~ek~~l~~ql~~~~d~~~l~~~~~~~~~~~~----~~-------~~~~~i~p~p~ 74 (486)
T 2yqc_A 6 QQQIIDSFKQANQDQLFQYYDSLTIDQQQEFIDQLSTIEEPAKLISTVEQAIQFSQ----TN-------STSRNFTQLPN 74 (486)
T ss_dssp HHHHHHHHHHTTCGGGGTTGGGSCHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTC---------------CCCEECCCG
T ss_pred HHHHHHHHHHcCcHHHhhhhccCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHhccc----cc-------cccccccCCCh
Confidence 47899999999999999999999999999999999999 99988887765432211 10 11234788887
Q ss_pred CCCCCC--CCchhhhccchhHHHhchhhhcCCceEEEEEccCCCCC-CCCCCCc-ccccCCCCcchHHHHHH-HHhhHHH
Q 007117 325 EGSLGP--CARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEG-NECDPHS-VVSESTANKSLALLQTL-LSDDQRF 399 (617)
Q Consensus 325 ~~~~~~--~~~~~~~~~~~~~~~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK~-~~i~l~s~kslf~l~~~-i~~~~~l 399 (617)
+ .+.+ ..+.+.+ .+|++.|+++|++||+|+|+||||+||| |+..||+ +++.+++++|||+++++ +++++++
T Consensus 75 ~-~~~~~~~~~~~~~---~~~~~~G~~~i~~gkvavvlLaGG~GTRLg~~~PK~l~~v~l~~gk~~l~~~~e~l~~~~~~ 150 (486)
T 2yqc_A 75 E-QTASTLDLSKDIL---QNWTELGLKAIGNGEVAVLLMAGGQGTRLGSSAPKGCFNIELPSQKSLFQIQAEKILKIEQL 150 (486)
T ss_dssp G-GEEETTTSCHHHH---HHHHHHHHHHHHTTCEEEEEEEESBCGGGTCSSBGGGCBCCCTTCCBHHHHHHHHHHHHHHH
T ss_pred h-hccccccCChHHH---HHHHHHHHHHHhhCCeEEEEEcCCccccCCCCCCCccceecCCCCCcHHHHHHHHHHHHHHH
Confidence 6 3321 1223344 4799999999999999999999999999 6666999 88999999999999986 6655555
Q ss_pred Hhh--c--CCCcccEEEeCCccchHHHHHHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccc-eecccCCCCccccc
Q 007117 400 VKI--E--NRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKF-KILMKSPWETLQAP 474 (617)
Q Consensus 400 ~~~--~--~~~~ip~~IMTS~~t~~~T~~ff~~~~~FGl~~~~v~~f~Q~~lP~~~~~~~g~~~g-kill~~~~~i~~~P 474 (617)
+.. + ..+.||||||||+.||+.|++||++|+|||++.++|+||+|+++||++.+ | ++++++++.++|+|
T Consensus 151 ~~~~~G~~~~~~ip~~ImtS~~t~~~t~~~~~~~~~fgl~~~~v~~f~Q~~~P~i~~d------g~~i~l~~~~~i~~~P 224 (486)
T 2yqc_A 151 AQQYLKSTKKPIINWYIMTSGPTRNATESFFIENNYFGLNSHQVIFFNQGTLPCFNLQ------GNKILLELKNSICQSP 224 (486)
T ss_dssp HHHHHTCSSCCCCEEEEEECGGGHHHHHHHHHHTGGGGSCGGGEEEEECCEEECBCTT------SSSBCEEETTEECEEE
T ss_pred hhhhcCCCcCCccCEEEEECCCCHHHHHHHHhhccccCCCcceEEEEecccceeEcCC------CCccccCCCCccccCc
Confidence 421 2 45789999999999999999999999999999999999999999999997 7 99999999999999
Q ss_pred CCCchHHHHHhhCchhHHHHHcCceEEEEEeCCcccc-cccHHHHHHHHHcCCcEEEEEeeccCCccc------------
Q 007117 475 VGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNA-IGNSMFLGFVKSCGADIGFQISEYAKHSEE------------ 541 (617)
Q Consensus 475 ~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~-~~DP~flG~~~~~~~d~~~kvV~k~~~~~E------------ 541 (617)
+||||+|.+|+++|+|++|.++|++|++|+|+||+|| .+||.|||||+.++++|+++||+|+. |+|
T Consensus 225 ~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~-~~e~~Gvl~~~~~dg 303 (486)
T 2yqc_A 225 DGNGGLYKALKDNGILDDLNSKGIKHIHMYCVDNCLVKVADPIFIGFAIAKKFDLATKVVRKRD-ANESVGLIVLDQDNQ 303 (486)
T ss_dssp CCGGGHHHHHHHTTHHHHHHHHTCCEEEEEETTBTTCCTTCHHHHHHHHHHTCSEEEEEEECCS-TTCCCCEEEEETTTT
T ss_pred CCchHHHHHHHHcCcHHHHHhcCCeEEEEECCCCceeeccCHHHHHHHHHcCCCEEEEEEEcCC-CCCceeEEEEEecCC
Confidence 9999999999999999999999999999999999999 69999999999999999999999962 321
Q ss_pred --------------------c------------ccceeeHHHHHH-hhhhhcc---ccccccccCCCcccccCCCcceec
Q 007117 542 --------------------R------------FNTMLSMNVMKK-LTNHINK---LEFYATPKLNSHVEKVDKEFIDVI 585 (617)
Q Consensus 542 --------------------~------------~~h~fs~~fl~~-~~~~~~~---L~~H~a~Kkip~~~~~~~~g~~v~ 585 (617)
. ++|+|+++||++ +.+.... ||||+|.|||||+|. ..|+.++
T Consensus 304 ~~~vvEy~E~~~~~~~~~~~~~~~~~~~~~~Ni~~~~~~l~~L~~~l~~~~~~~~~lp~~v~~Kki~~~d~--~~g~~~~ 381 (486)
T 2yqc_A 304 KPCVIEYSEISQELANKKDPQDSSKLFLRAANIVNHYYSVEFLNKMIPKWISSQKYLPFHIAKKKIPSLNL--ENGEFYK 381 (486)
T ss_dssp EEEEECGGGSCHHHHHCEETTEEEEESSCEEEEEEEEEEHHHHHHHHHHHTTCTTTSCCEEEEECCCEECT--TTCCEEC
T ss_pred CEEEEEEecCCHHHhhcccccccccccccceeEEEEEEeHHHHHHHHHhhcCcccCCcceEeccccCcccc--ccCeecc
Confidence 0 358999999999 5555456 999999999999853 3468999
Q ss_pred CCCCCeeEEEEEEecccCCCCCCceEEEEec
Q 007117 586 PAAPNSYELRSSIYSCLNACSLDKVCVMEIT 616 (617)
Q Consensus 586 P~~pN~~K~E~fifD~f~~~~~~~~~~~ev~ 616 (617)
|++|||+|||+||||+|+++++++++++||+
T Consensus 382 p~~pn~~klE~~~~d~~~~~~l~~~~~~~V~ 412 (486)
T 2yqc_A 382 PTEPNGIKLEQFIFDVFPSVELNKFGCLEVD 412 (486)
T ss_dssp CSSCCEEEEECCGGGGGGGSCGGGEEEEEEC
T ss_pred CCCCCeeeeeehHhhHHhhcccCceEEEEEC
Confidence 9999999999999999999988899999996
No 2
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*
Probab=100.00 E-value=7.8e-69 Score=594.11 Aligned_cols=347 Identities=19% Similarity=0.278 Sum_probs=295.5
Q ss_pred HHHHHHHHHcCccccccccCCCCHHHHHHHHHHHhcCCHHHHHHHHHhccCCccccchhhhhhhhhhhhhcccccCCCCC
Q 007117 247 IAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKISGEG 326 (617)
Q Consensus 247 ~~l~~~L~~~gQ~HLl~~~~~l~~~ek~~L~~ql~~iD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~ 326 (617)
++|+++|+++||+|||+||++|+++||++|++||.++|++.+.++++.+....+..+.+. ...+.++|+|.+
T Consensus 4 ~~l~~~l~~~gQ~hl~~~~~~l~~~ek~~l~~ql~~~d~~~~~~~~~~~~~~~~~s~~~~-------~~~~~i~p~p~~- 75 (505)
T 1jv1_A 4 NDLKLTLSKAGQEHLLRFWNELEEAQQVELYAELQAMNFEELNFFFQKAIEGFNQSSHQK-------NVDARMEPVPRE- 75 (505)
T ss_dssp HHHHHHHHHTTCGGGGTTGGGSCHHHHHHHHHHHHTCCHHHHHHHHHHHHHCC------------------CCBCCCGG-
T ss_pred HHHHHHHHHcCcHHHHhhhhcCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHhhhhccccC-------cccccccCCChH-
Confidence 569999999999999999999999999999999999999977777654332211100010 112457888876
Q ss_pred CCCCC-CchhhhccchhHHHhchhhhcCCceEEEEEccCCCCC-CCCCCCc-ccccCCCCcchHHHHHH-HHhhHHHHhh
Q 007117 327 SLGPC-ARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEG-NECDPHS-VVSESTANKSLALLQTL-LSDDQRFVKI 402 (617)
Q Consensus 327 ~~~~~-~~~~~~~~~~~~~~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK~-~~i~l~s~kslf~l~~~-i~~~~~l~~~ 402 (617)
.+.+. .+.+++ .+|++.|+++|+.||+|+|+||||+||| |+..||+ ++++++++++||+++++ ++++|++++.
T Consensus 76 ~~~~~~~~~~~~---~~~~~~Gl~~i~~~kvavViLAGG~GTRLg~~~PK~l~pv~~~~gk~~le~~~e~l~~lq~la~~ 152 (505)
T 1jv1_A 76 VLGSATRDQDQL---QAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEK 152 (505)
T ss_dssp GEEETTTTGGGH---HHHHHHHHHHHHTTCEEEEEECCCCCCTTSCSSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hcccccCChHHH---HHHHHHhHHhhccCceEEEEEcCCccccCCCCCCCccceeecCCCCcHHHHHHHHHHHHHHHHHH
Confidence 33321 123334 5899999999999999999999999999 5556999 78888999999999986 7767777532
Q ss_pred --cCCCcccEEEeCCccchHHHHHHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchH
Q 007117 403 --ENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGV 480 (617)
Q Consensus 403 --~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FGl~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv 480 (617)
+..+.||||||||+.||+.|++||++|+|||+++++|+||.|+++||++.+ |+++|++++.++++|+||||+
T Consensus 153 ~~G~~~~ip~vImtS~~t~e~t~~~f~~~~~fGl~~~~I~~f~Q~~~P~i~~~------g~~~l~~~~~~e~~P~GtGG~ 226 (505)
T 1jv1_A 153 YYGNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAMSFD------GKIILEEKNKVSMAPDGNGGL 226 (505)
T ss_dssp HHSSCCCCCEEEEECTTTHHHHHHHHHHTGGGGSCGGGEEEEECCEEECEETT------SCBCEEETTEECEEECCGGGH
T ss_pred hcCCCccceEEEEecCCCHHHHHHHHHhhhhcCCCcCceEEEEecceEEEcCC------CcccccCCcccccCCCCchHH
Confidence 334789999999999999999999999999999999999999999999987 799999999999999999999
Q ss_pred HHHHhhCchhHHHHHcCceEEEEEeCCcccc-cccHHHHHHHHHcCCcEEEEEeeccCCcccc-----------------
Q 007117 481 FSLLSSHNIIKNLDELGVEYIQICTANPRNA-IGNSMFLGFVKSCGADIGFQISEYAKHSEER----------------- 542 (617)
Q Consensus 481 ~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~-~~DP~flG~~~~~~~d~~~kvV~k~~~~~E~----------------- 542 (617)
|++|.++|+|++|.++|++|++|+|+||+|+ .+||.|+|||+.++++|+++|++|+. +.|+
T Consensus 227 ~~~L~~sg~L~~l~~~g~e~~~V~n~Dn~L~~~~d~~~lg~~~~~~~~~~~~v~~k~~-~~e~~Gvl~~~dg~~~vvEy~ 305 (505)
T 1jv1_A 227 YRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTN-PTEPVGVVCRVDGVYQVVEYS 305 (505)
T ss_dssp HHHHHHTTHHHHHHHTTCCEEEEEETTBTTCCTTCHHHHHHHHHTTCSEEEEEEECCS-TTCSCCEEEEETTEEEEECGG
T ss_pred HHHHHHcCcHHHHHhcCCCEEEEEECCccccccchHHHHHHHHHcCCCEEEEEEEccC-CccCcceEEEECCeEEEEEEe
Confidence 9999999999999999999999999999988 69999999999999999999998763 3321
Q ss_pred -----------------------ccceeeHHHHHHhhhh-hccccccccccCCCcccccCCCcceecCCCCCeeEEEEEE
Q 007117 543 -----------------------FNTMLSMNVMKKLTNH-INKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSI 598 (617)
Q Consensus 543 -----------------------~~h~fs~~fl~~~~~~-~~~L~~H~a~Kkip~~~~~~~~g~~v~P~~pN~~K~E~fi 598 (617)
++|+|+++||+++... ...||||+|.||+||+| ++|+.|+|++|||+|||+||
T Consensus 306 E~p~~~~~~~~~~g~~~~~~~N~~~~~f~l~~L~~i~~~~~~~l~~hv~~Kkip~~d---~~g~~v~P~~pn~~klE~~i 382 (505)
T 1jv1_A 306 EISLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVD---TQGQLIKPDKPNGIKMEKFV 382 (505)
T ss_dssp GSCHHHHHCBCTTSSBSSCEEEEEEEEEEHHHHHHHHHTTGGGCCCEEEEECCCEEC---TTSCEECCSSCCEEEEECCG
T ss_pred eCCHHHhhhcccccccccceeeEEEEEecHHHHHHHHHhhcccCCceeccccccccc---CCCCCcCCCCCCceeHHHHH
Confidence 2589999999999764 45799999999999984 55799999999999999999
Q ss_pred ecccCCCCCCceEEEEec
Q 007117 599 YSCLNACSLDKVCVMEIT 616 (617)
Q Consensus 599 fD~f~~~~~~~~~~~ev~ 616 (617)
||+|++++ +++++||+
T Consensus 383 ~d~~~~~~--~~~~~~V~ 398 (505)
T 1jv1_A 383 FDIFQFAK--KFVVYEVL 398 (505)
T ss_dssp GGGGGGCS--SEEEEEEC
T ss_pred HHHHhhcC--ceEEEEEC
Confidence 99999998 99999996
No 3
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}
Probab=100.00 E-value=3.4e-69 Score=578.61 Aligned_cols=262 Identities=19% Similarity=0.273 Sum_probs=243.7
Q ss_pred hhHHHhchhhhcCCceEEEEEccCCCCC-CCCCCCc-ccccCCCCcchHHHHHH-HHhhHHHHhh---cCCCcccEEEeC
Q 007117 341 SSLQKKGNHLVSEGKKAMVLVVHNSEEG-NECDPHS-VVSESTANKSLALLQTL-LSDDQRFVKI---ENRASMPLVLVL 414 (617)
Q Consensus 341 ~~~~~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK~-~~i~l~s~kslf~l~~~-i~~~~~l~~~---~~~~~ip~~IMT 414 (617)
++|+++|+++|++||||||+|||||||| |+..||+ ++++++++|||||++++ ++++|++++. +.++.|||||||
T Consensus 21 ~~~~~~Gl~~i~~gkvavvlLAGG~GTRLG~~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMt 100 (405)
T 3oc9_A 21 KEHYYRGLELISQGKTALITPAGGQGSRLGFEHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIHWFLMT 100 (405)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSBCTTTTCCSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEE
T ss_pred HHHHHHHHHHHhcCceEEEEecCCCcccccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEe
Confidence 5899999999999999999999999999 5666999 89999999999999997 8778888652 346889999999
Q ss_pred CccchHHHHHHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHH
Q 007117 415 PALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLD 494 (617)
Q Consensus 415 S~~t~~~T~~ff~~~~~FGl~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~ 494 (617)
|+.||+.|++||++|+|||++++||+||.|+++||++.+ |+++|+++++++|+|+||||+|.+|+++|+|++|.
T Consensus 101 S~~t~e~t~~~f~~~~~fGl~~~~i~~f~Q~~~P~i~~d------g~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~ 174 (405)
T 3oc9_A 101 NEETIEEINNYFKEHQYFGLSSEQIHCFPQGMLPVVDFN------GKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMN 174 (405)
T ss_dssp CTTTHHHHHHHHHHTGGGGSCTTSEEEEECCEEECBCTT------SCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHH
T ss_pred CCccHHHHHHHHHhCcccCCCccceEEEeeCceeEEecC------CCeecCCCCccccccCCChHHHHHHHHCCcHHHHH
Confidence 999999999999999999999999999999999999987 79999999999999999999999999999999999
Q ss_pred HcCceEEEEEeCCcccc-cccHHHHHHHHHcCCcEEEEEeeccCCcccc-------------------------------
Q 007117 495 ELGVEYIQICTANPRNA-IGNSMFLGFVKSCGADIGFQISEYAKHSEER------------------------------- 542 (617)
Q Consensus 495 ~~Gi~yi~v~~vDN~l~-~~DP~flG~~~~~~~d~~~kvV~k~~~~~E~------------------------------- 542 (617)
++|++|+||+|+||+|+ .+||.|||||++++++|++|||+|+ .|+|+
T Consensus 175 ~~Gieyi~v~nvDN~L~~~~Dp~~lg~~~~~~~d~~~kvv~k~-~~dek~Gvl~~~dg~~~vvEysei~~e~e~~~~~g~ 253 (405)
T 3oc9_A 175 EKGIKYSVAHNVDNILCKDVDPNMIGYMDLLQSEICIKIVKKG-FKEEKVGVLVKEQERIKVVEYTELTDELNKQLSNGE 253 (405)
T ss_dssp HHTCCEEEEECTTBTTCCSSCHHHHHHHHHTTCSEEEEEEECC-STTCSCCEEEEETTEEEEECGGGCCTTTTCBCTTSC
T ss_pred hcCCEEEEEEeCCCcccccCCHHHHHHHHHcCCCEEEEEEECC-CCCCccceEEEECCeeEEEEEeeCCHHHhhcCCCCc
Confidence 99999999999999888 6999999999999999999999999 56543
Q ss_pred --------ccceeeHHHHHHhhhhhccccccccccCCCcccccCCCcceecCCCCCeeEEEEEEecccCCCCCCceEEEE
Q 007117 543 --------FNTMLSMNVMKKLTNHINKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYSCLNACSLDKVCVME 614 (617)
Q Consensus 543 --------~~h~fs~~fl~~~~~~~~~L~~H~a~Kkip~~~~~~~~g~~v~P~~pN~~K~E~fifD~f~~~~~~~~~~~e 614 (617)
++|+||++||++++ ..+||||+|+|||||+| .+|+.|+|++|||||||+||||+||+++ +++++|
T Consensus 254 l~fn~~Ni~~h~fs~~fL~~i~--~~~l~~h~a~Kkip~~d---~~g~~~~p~~~ngiklE~fifd~f~~~~--~~~~~e 326 (405)
T 3oc9_A 254 FIYNCGHISINGYSTSFLEKAA--EYQLPYHIAKKKVPFVN---EQGIVIHPSENNGIKKEIFFFDVFPLAT--KVSIFE 326 (405)
T ss_dssp BSSCEEEEEEEEEEHHHHHHHT--TCCCCCEEEEECCCEEC---TTSCEECCSSCCEEEEECCGGGGGGGCS--CEEEEE
T ss_pred eeeccceeEeeecCHHHHHHhh--hccCCcEEeccccCccC---CCCCCcccCCcceeehHHHHHHHHHhcc--ceEEEE
Confidence 25999999999998 34799999999999994 4678999999999999999999999998 999999
Q ss_pred ec
Q 007117 615 IT 616 (617)
Q Consensus 615 v~ 616 (617)
|+
T Consensus 327 V~ 328 (405)
T 3oc9_A 327 IQ 328 (405)
T ss_dssp CC
T ss_pred EC
Confidence 96
No 4
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A
Probab=100.00 E-value=4.7e-63 Score=542.42 Aligned_cols=325 Identities=12% Similarity=0.146 Sum_probs=258.1
Q ss_pred HHhhhhhHHhhhhhHHHHHHHHHHHHcCccccccccCCCCHHHHHHHHHHHhcCCHHHHHHHHHhccCCccccchhhhhh
Q 007117 230 ERRQLEWKERKKFQKRLIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNATELMN 309 (617)
Q Consensus 230 ~~~~~~~~~~~k~~~~~~~l~~~L~~~gQ~HLl~~~~~l~~~ek~~L~~ql~~iD~~~l~~~~~~~~~~~~~~~~~~~~~ 309 (617)
.....+|++..+..+. ..-|.||++||++|++++|+.|.+|++.+ ..+++++++... . .
T Consensus 34 ~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~l~~~~~~~~~~el~~f-~~lf~r~l~~~~---~--~------ 92 (528)
T 3r3i_A 34 QDGASQFQEVIRQELE---------LSVKKELEKILTTASSHEFEHTKKDLDGF-RKLFHRFLQEKG---P--S------ 92 (528)
T ss_dssp ----------CTTTTT---------STTTSSSTTTSSSCCTTTTHHHHHHHHHH-HHHHHHHHHC---------------
T ss_pred cchHHHHHHHhHHHHH---------HHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HHHHHHHHhhcc---C--C------
Confidence 3556777776665542 33489999999999999999999999999 577777775311 0 0
Q ss_pred hhhhhhhcccccCCCCCCCCCCCchhhhccchhHHHhchhhhcCCceEEEEEccCCCCC-CCCCCCcccccCCCCcchHH
Q 007117 310 ATKAELMISSLKISGEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEG-NECDPHSVVSESTANKSLAL 388 (617)
Q Consensus 310 ~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK~~~i~l~s~kslf~ 388 (617)
-.++.++|+|.+ .+. +.+.+. .|+..|...++.+|||||+|||||||| |+.+|||+ +++++++||||
T Consensus 93 ----~~~~~i~p~p~~-~~~---~~~~l~---~~~~~~~~~~~l~kvavvlLaGGlGTRLG~~~PK~~-i~V~sgktflq 160 (528)
T 3r3i_A 93 ----VDWGKIQRPPED-SIQ---PYEKIK---ARGLPDNISSVLNKLVVVKLNGGLGTSMGCKGPKSL-IGVRNENTFLD 160 (528)
T ss_dssp -------CCCCCCCTT-TSE---EHHHHT---TSCCCCSSCTTCTTEEEEEECCCBCTTTTCSSBGGG-SEEETTEEHHH
T ss_pred ----CCHHHCcCCCHH-Hcc---CHhhcC---CccccchhhhhcCceEEEEeCCCCccccCCCCCccc-eecCCCCcHHH
Confidence 012568998888 443 233342 355556567788999999999999999 67779994 46679999999
Q ss_pred HHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccceecccC--
Q 007117 389 LQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKS-- 466 (617)
Q Consensus 389 l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FGl~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~-- 466 (617)
++++ +++++.+ ..++.||||||||+.||++|++||++|+||| .||+||+|+++||++.+ |+++++.
T Consensus 161 l~~e--qI~~l~~-~~g~~IPl~IMTS~~T~~~T~~~f~k~~~fg---~~V~~F~Q~~~P~i~~d------g~l~l~~~~ 228 (528)
T 3r3i_A 161 LTVQ--QIEHLNK-TYNTDVPLVLMNSFNTDEDTKKILQKYNHCR---VKIYTFNQSRYPRINKE------SLLPVAKDV 228 (528)
T ss_dssp HHHH--HHHHHHH-HHTCCCCEEEEECTTTHHHHHSSCGGGTTSS---CCEEEEECCCBCCEETT------TCCCC----
T ss_pred HHHH--HHHHHHH-HhCCCCCEEEEeccchhHHHHHHHHhcCccC---CCeEEEEeCCeeeEecC------Cceeccccc
Confidence 9884 3344433 2358899999999999999999999999999 49999999999999998 7999987
Q ss_pred ----CCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCcccccccHHHHHHHHHc----CCcEEEEEeeccCC
Q 007117 467 ----PWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIGNSMFLGFVKSC----GADIGFQISEYAKH 538 (617)
Q Consensus 467 ----~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~~~DP~flG~~~~~----~~d~~~kvV~k~~~ 538 (617)
+++++|+|+||||+|.+|+++|+|++|.++|++|+||+||||++|++||.|||||+.+ ++||++|||+|+ .
T Consensus 229 ~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~v~nvDNlga~vDp~~Lg~~~~~~~~~~~d~~~kVv~Kt-~ 307 (528)
T 3r3i_A 229 SYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGATVDLYILNHLMNPPNGKRCEFVMEVTNKT-R 307 (528)
T ss_dssp ---------CBCCBTTTHHHHHHHHSHHHHHHHTTCCEEEEEETTBTTCCCCHHHHHHHSSCSSSCCCSEEEEECCCC-T
T ss_pred ccCCCcceeeCcCCChHHHHHHHHCChHHHHHhcCCEEEEEEccCCcccccCHHHHHHHHhcccccCCcEEEEEeEcc-c
Confidence 8899999999999999999999999999999999999999999998899999999998 999999999999 5
Q ss_pred cccc--------------------------------------ccceeeHHHHHHhhhhh-ccccccccccCCCcccccCC
Q 007117 539 SEER--------------------------------------FNTMLSMNVMKKLTNHI-NKLEFYATPKLNSHVEKVDK 579 (617)
Q Consensus 539 ~~E~--------------------------------------~~h~fs~~fl~~~~~~~-~~L~~H~a~Kkip~~~~~~~ 579 (617)
|+|+ +||+|+++||+++.+.. -.||+|++.|++|
T Consensus 308 ~dek~Gvl~~~dGk~~vvEyseip~e~~~~~~g~~~f~~~Ntnnlw~~L~~L~~v~~~~~l~Lp~ivn~K~vd------- 380 (528)
T 3r3i_A 308 ADVKGGTLTQYEGKLRLVEIAQVPKAHVDEFKSVSKFKIFNTNNLWISLAAVKRLQEQNAIDMEIIVNAKTLD------- 380 (528)
T ss_dssp TCCSSCEEECSSSSCEEECTTSSCGGGTTTSSCSSSCCCCEEEEEEEEHHHHHHHHHTTCCCCCCEEEEECCS-------
T ss_pred cCCcccEEEEECCeEEEEEecCCChhHhhccCCcccCCeEEEEEEEEEHHHHHHHHHhCCCCCCceecCcccC-------
Confidence 6663 26999999999997753 4699999999984
Q ss_pred CcceecCCCCCeeEEEEEEecccCCCCCCceEEEEec
Q 007117 580 EFIDVIPAAPNSYELRSSIYSCLNACSLDKVCVMEIT 616 (617)
Q Consensus 580 ~g~~v~P~~pN~~K~E~fifD~f~~~~~~~~~~~ev~ 616 (617)
..||++|+|+||||+|++.+ ++.++||+
T Consensus 381 -------~~~~viqlEt~igd~i~~f~--~~~~i~Vp 408 (528)
T 3r3i_A 381 -------GGLNVIQLETAVGAAIKSFE--NSLGINVP 408 (528)
T ss_dssp -------SSSCEEEEEBCSTTCSTTSS--SCCCEECC
T ss_pred -------CCCCEEEeHHHHHHHHHhcc--CcEEEEEe
Confidence 35899999999999999998 99999986
No 5
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*
Probab=100.00 E-value=2.2e-61 Score=536.77 Aligned_cols=328 Identities=14% Similarity=0.174 Sum_probs=262.3
Q ss_pred HHHHHHHHHHHH--cCccccccccCC-CC--HHHHHHHHHHHhcCCHHH-------HHHHHHhccCCccccchhhhhhhh
Q 007117 244 KRLIAAKKKLRE--MEQQHVFHGFRF-GE--KYQTSLLANHIVGINSKL-------LQQALQNIEIPSKRWNATELMNAT 311 (617)
Q Consensus 244 ~~~~~l~~~L~~--~gQ~HLl~~~~~-l~--~~ek~~L~~ql~~iD~~~-------l~~~~~~~~~~~~~~~~~~~~~~~ 311 (617)
..+++|+++|++ +||+|||+||++ |+ ++||++|++||..||+++ ++++.+.+. +.. +.
T Consensus 7 ~~~~~L~~~l~~~~~gQ~HLf~~w~~~l~~~~~e~~~L~~qL~~~d~~~~~gl~~~~~~a~~~l~-~~~--~~------- 76 (630)
T 3ogz_A 7 SNLQALREELCTPGLDQGHLFEGWPETVDECNERQIALLTDLYMFSNMYPGGVAQYIRNGHELLA-RES--EE------- 76 (630)
T ss_dssp HHHHHHHHHHTSTTTCCGGGGTTCCSSGGGCCHHHHHHHHHHHHGGGTSTTHHHHHHHHHHHHHH-HHT--SC-------
T ss_pred hhHHHHHHHhhhccCCchhhhhhcccccCCCHHHHHHHHHHHHhhChhhhhhHHHHHHHHHHHhh-ccc--cC-------
Confidence 557899999997 999999999999 99 999999999999999653 444444331 110 00
Q ss_pred hhhhhcccccCCCC--CCCCCCCchhhhccchhHHHhchhhhcCCceEEEEEccCCCCC-CCCCCCc-ccccCCCCcchH
Q 007117 312 KAELMISSLKISGE--GSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEG-NECDPHS-VVSESTANKSLA 387 (617)
Q Consensus 312 ~~~~~~~~~~vp~~--~~~~~~~~~~~~~~~~~~~~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK~-~~i~l~s~kslf 387 (617)
...+.++|+|.. +... ..+++++ .+|++.|+++|+ |||||+|||||||| |+.+||+ +++++++++|||
T Consensus 77 --~~~~~~~p~P~~~~~~~l-~~~~~~~---~~~~~~Gl~~i~--kvavvllaGGlGTRLG~~~pK~~lpv~~~s~ks~l 148 (630)
T 3ogz_A 77 --VDFAALEMPPLIFEAPSL-HRRTAER---TALENAGTAMLC--KTVFVLVAGGLGERLGYSSIKVSLPVETATNTTYL 148 (630)
T ss_dssp --CCCSEEECCSCEEECCCT-TCCCHHH---HHHHHHHHHHGG--GEEEEEECCCEEGGGTEEEEGGGSBSCTTTCCBHH
T ss_pred --CcccccccCCCCCccccc-cCCHHHH---HHHHHHhHHHHh--hceEEEecCCcccccCCCCCcccceecCCCCCcHH
Confidence 012345655532 1211 1233344 589999999998 99999999999999 6677999 889989999999
Q ss_pred HHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccceecccCC
Q 007117 388 LLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSP 467 (617)
Q Consensus 388 ~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FGl~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~ 467 (617)
|++++ +++ +. .++.||||||||+.||+.|++||++ ||++++||+||+|+++||++.+ + |+++|+++
T Consensus 149 ql~~e--~i~---~~-~g~~iPl~IMTS~~T~~~T~~~~~~---fgl~~~~V~~F~Q~~~P~i~~~-~----g~l~l~~~ 214 (630)
T 3ogz_A 149 AYYLR--WAQ---RV-GGKEVPFVIMTSDDTHDRTLQLLRE---LQLEVPNLHVLKQGQVFCFADS-A----AHLALDET 214 (630)
T ss_dssp HHHHH--HHH---HH-HCTTCCEEEEECTTTHHHHHHHHHH---TTCCCTTEEEEECCCEECBSST-T----CCBCBCTT
T ss_pred HHHHH--HHH---HH-hCCCCcEEEEecccchHHHHHHHHH---hCCCcccEEEEEcCCEEEEecC-C----CceeecCC
Confidence 99983 223 22 2488999999999999999999999 9999999999999999999744 2 79999999
Q ss_pred CCcccccCCCchHHHHHhhCc------------------hhHHHHHcCceEEEEEeCCcccc-cccHHHHHHHHHcCCcE
Q 007117 468 WETLQAPVGSGGVFSLLSSHN------------------IIKNLDELGVEYIQICTANPRNA-IGNSMFLGFVKSCGADI 528 (617)
Q Consensus 468 ~~i~~~P~GnGgv~~aL~~~g------------------~l~~l~~~Gi~yi~v~~vDN~l~-~~DP~flG~~~~~~~d~ 528 (617)
++++|+|+||||+|.+|+++| +|++|.++|++|+||+||||+|+ .+||.|||||+.+++||
T Consensus 215 ~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi~v~~vDN~L~~~~DP~~lG~~~~~~~d~ 294 (630)
T 3ogz_A 215 GKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIVFIQDTNAGATITIPISLALSAEHSLDM 294 (630)
T ss_dssp SSBCEECCCTTHHHHHHHHCBC--------------CCBHHHHHHHTTCCEEEEECTTBTTHHHHHHHHHHHHHHTTCSE
T ss_pred CcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHHHHHHHcCCEEEEEEccCCccccccCHHHhHHHHhcCCCE
Confidence 999999999999999999999 99999999999999999999998 69999999999999999
Q ss_pred EEEEeeccCCcccc-----------------------------------------------------ccceeeHH-HHHH
Q 007117 529 GFQISEYAKHSEER-----------------------------------------------------FNTMLSMN-VMKK 554 (617)
Q Consensus 529 ~~kvV~k~~~~~E~-----------------------------------------------------~~h~fs~~-fl~~ 554 (617)
++|||+|+ + .|+ +||+|+++ |++.
T Consensus 295 ~~kvv~r~-p-~E~vG~l~~~~~~dGk~~~v~vVEYsei~~~~~~~~~~~g~~~~~~~~~~~f~GNtNnl~~~L~a~~~~ 372 (630)
T 3ogz_A 295 NFTCIPRV-P-KEPIGLLCRTKKNSGDPWLVANVEYNVFAEVSRALNKDGGDEVSDPTGFSPFPGSVNTLVFKLSSYVDR 372 (630)
T ss_dssp EEEEECCC-S-SCSSCEEEEEESSTTSCCEEEEECHHHHHHHHHHC------------CCCSSCEEEEEEEEEHHHHHHH
T ss_pred EEEEEECC-C-CcceeeEEEEecCCCceeeeeEEEeccCCHhHhhccCCCccccccccccccccccceeeeEEHHHHHHH
Confidence 99999986 3 321 14778886 5666
Q ss_pred hhhhhccccccccccCCCcccccCCCcceecCCCCCeeEEEEEEec---ccCCCCCCceEEEEec
Q 007117 555 LTNHINKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYS---CLNACSLDKVCVMEIT 616 (617)
Q Consensus 555 ~~~~~~~L~~H~a~Kkip~~~~~~~~g~~v~P~~pN~~K~E~fifD---~f~~~~~~~~~~~ev~ 616 (617)
+......||.++..|. + |.. ++..+|++|||.|+|| +|++.. .++++++|+
T Consensus 373 l~~~~~~ip~~vNpK~---~---d~~----~~~~~~~~qLEt~m~d~~~~F~~~~-~~v~~~~V~ 426 (630)
T 3ogz_A 373 LRESHGIVPEFINPKY---S---DET----RRSFKKPARIESLMQDIALLFSEDD-YRVGGTVFE 426 (630)
T ss_dssp HHHHTTCCCCEECCCB---S---SSS----SCCBSSCBCEECCGGGGGGGCCTTT-CCEEEEECC
T ss_pred HHhccCccceecCCcc---c---CCc----ccccCcchhhhhHHHHHHHhccccC-cceeEEEEC
Confidence 6554446787776653 3 332 2455789999999999 787432 278999986
No 6
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}
Probab=100.00 E-value=1.2e-58 Score=504.34 Aligned_cols=245 Identities=13% Similarity=0.184 Sum_probs=215.5
Q ss_pred hchhhhcCCceEEEEEccCCCCC-CCCCCCc-ccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHH
Q 007117 346 KGNHLVSEGKKAMVLVVHNSEEG-NECDPHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLE 423 (617)
Q Consensus 346 ~Gl~~i~~gkvavvllAGG~GtR-g~~~pK~-~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~ 423 (617)
.|+++|+ |||||+|||||||| |+.+||| ++++ +++||||++++ +++++.+ ..++.||||||||+.||++|+
T Consensus 69 ~G~~~L~--kvavvlLaGGlGTRLG~~~pKg~~~v~--sgksflql~~e--qI~~l~~-~~~~~iPl~IMTS~~T~~~T~ 141 (484)
T 3gue_A 69 ENTALLR--QAVVLKLNGGLGTGMGLNGPKSLLQVK--NGQTFLDFTAL--QLEHFRQ-VRNCNVPFMLMNSFSTSGETK 141 (484)
T ss_dssp CCHHHHT--TEEEEEEECCCCGGGTCSSCGGGSEEE--TTEEHHHHHHH--HHHHHHH-HHTCCCCEEEEECTTTHHHHH
T ss_pred HHHHHHh--hcEEEEEcCCcccccCCCCCceeeecC--CCCcHHHHHHH--HHHHHHH-HcCCCceEEEECCcchhHHHH
Confidence 6999998 89999999999999 7778999 5554 99999999984 3333333 246889999999999999999
Q ss_pred HHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccce--ecccCCCCcccccCCCchHHHHHhhCchhHHHHHcCceEE
Q 007117 424 KLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFK--ILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYI 501 (617)
Q Consensus 424 ~ff~~~~~FGl~~~~v~~f~Q~~lP~~~~~~~g~~~gk--ill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi 501 (617)
+||++|+|||++++||+||+|+++||++.+ |+ ++++++++++|+|+||||+|.+|++||+|++|.++|++|+
T Consensus 142 ~~~~k~~~Fgl~~~~v~~F~Q~~~P~i~~d------g~~~i~~~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi 215 (484)
T 3gue_A 142 NFLRKYPTLYEVFDSDIELMQNRVPKIRQD------NFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYM 215 (484)
T ss_dssp HHGGGCHHHHTTCCCCCEEECCCEECEETT------TCCBCCCTTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEE
T ss_pred HHHHhCcccCCCccceEEEEeCceeeEecC------CCceeecCCCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEE
Confidence 999999999999999999999999999998 45 4568889999999999999999999999999999999999
Q ss_pred EEEeCCcccccccHHHHHHHHHcCCcEEEEEeeccCCccccc--------------------------------------
Q 007117 502 QICTANPRNAIGNSMFLGFVKSCGADIGFQISEYAKHSEERF-------------------------------------- 543 (617)
Q Consensus 502 ~v~~vDN~l~~~DP~flG~~~~~~~d~~~kvV~k~~~~~E~~-------------------------------------- 543 (617)
||+||||+.+.+||.|||||+.+++||++|||+|+ +++|++
T Consensus 216 ~v~~vDNL~a~~Dp~~lG~~~~~~~d~~~kvv~Kt-~~dekgG~l~~~~~~~~~~~~~dG~~~vvEyseip~e~~~~f~~ 294 (484)
T 3gue_A 216 FISNGDNLGATLDVRLLDYMHEKQLGFLMEVCRRT-ESDKKGGHLAYKDVIDETTGQTRRRFVLRESAQCPKEDEDSFQN 294 (484)
T ss_dssp EEEETTCTTCCCCHHHHHHHHHTTCSEEEEEEECC-TTCCSSEEEEEEC--------CCCEEEEEEGGGSCGGGHHHHTC
T ss_pred EEEcCCCcccccCHHHHHHHHhcCCCEEEEEEECC-CCCCceeEEEEEccccccccCCCCCEEEEEeccCCHHHHhhhcC
Confidence 99999994447999999999999999999999999 566532
Q ss_pred ----------cceeeHHHHHHhhhh---hccccccccccCCCcccccCCCcceecCCCCCeeEEEEEEecccCCCCCCce
Q 007117 544 ----------NTMLSMNVMKKLTNH---INKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYSCLNACSLDKV 610 (617)
Q Consensus 544 ----------~h~fs~~fl~~~~~~---~~~L~~H~a~Kkip~~~~~~~~g~~v~P~~pN~~K~E~fifD~f~~~~~~~~ 610 (617)
|+++++++|+++.+. ..+||+|+|+|+|. .++|+.||++|||+||||+|++++ ++
T Consensus 295 ~~g~~~FNtnNi~~~l~~l~~~l~~~~g~~~Lp~~vn~K~id----------~~k~~~~~~iqlE~~~~d~~~~~~--~~ 362 (484)
T 3gue_A 295 IAKHCFFNTNNIWINLMELKKMMDEQLGVLRLPVMRNPKTVN----------PQDSQSTKVYQLEVAMGAAISLFD--RS 362 (484)
T ss_dssp TTTSCEEEEEEEEEEHHHHHHHHHHTTTCCCCCCEEEEEESS----------TTCTTSCEEEEEECCGGGGGTTSS--SE
T ss_pred CCCceEeEeeeEEEEHHHHHHHHHhccCcCCCCcEeccceec----------CCCCCCCCEeehHHHHHHHHHhCC--cc
Confidence 355777888776543 23799999999982 357999999999999999999998 99
Q ss_pred EEEEec
Q 007117 611 CVMEIT 616 (617)
Q Consensus 611 ~~~ev~ 616 (617)
+++||+
T Consensus 363 ~~ieV~ 368 (484)
T 3gue_A 363 EAVVVP 368 (484)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 999996
No 7
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*
Probab=100.00 E-value=5.1e-49 Score=434.02 Aligned_cols=247 Identities=13% Similarity=0.179 Sum_probs=216.2
Q ss_pred HhchhhhcCCceEEEEEccCCCCC-CCCCCCc-ccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHH
Q 007117 345 KKGNHLVSEGKKAMVLVVHNSEEG-NECDPHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQML 422 (617)
Q Consensus 345 ~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK~-~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T 422 (617)
..|+++|+ ++|||+||||+||| |+..||+ ++++ +++|||+++++ ++.++.. ..++.||||||||+.||+.|
T Consensus 67 ~~g~~~l~--k~avViLAGGlGTRLg~~~PK~llpV~--~gk~fLe~~ie--~l~~~~~-~~g~~ip~viMtS~~t~e~t 139 (505)
T 2oeg_A 67 ECDNAVLQ--STVVLKLNGGLGTGMGLCDAKTLLEVK--DGKTFLDFTAL--QVQYLRQ-HCSEHLRFMLMDSFNTSAST 139 (505)
T ss_dssp CCCHHHHH--TEEEEEEECCCCGGGTCCSCGGGSEEE--TTEEHHHHHHH--HHHHHHH-HTCTTCEEEEEECHHHHHHH
T ss_pred hHHHHHHh--cceEEEEcCCcccccCCCCCCcccccC--CCCcHHHHHHH--HHHHHHH-hcCCCcCEEEEeCCCCHHHH
Confidence 37999999 99999999999999 5556999 5555 89999999873 2333322 23578999999999999999
Q ss_pred HHHHH-HCCCCCCCCCcEEEEecCCcccccCCCCccccceec-ccCCCCcccccCCCchHHHHHhhCchhHHHHHcCceE
Q 007117 423 EKLFL-DNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKIL-MKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEY 500 (617)
Q Consensus 423 ~~ff~-~~~~FGl~~~~v~~f~Q~~lP~~~~~~~g~~~gkil-l~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~y 500 (617)
++||+ +|+|||+++++|++|.|+++||++.+ + ++++ +++++.++++|+||||+|.+|+++|+|++|.++|++|
T Consensus 140 ~~~f~~~~~~fGl~~~~I~~f~Q~~~P~~~~~--~---~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~ 214 (505)
T 2oeg_A 140 KSFLKARYPWLYQVFDSEVELMQNQVPKILQD--T---LEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRY 214 (505)
T ss_dssp HHHHHHHCHHHHTTCCCCCEEECCCEECEETT--T---CCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCE
T ss_pred HHHHhhhhhccCCCccceEEEEEcCEEeEecC--C---CceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhcCCCE
Confidence 99999 99999999999999999999999998 3 5766 7888889999999999999999999999999999999
Q ss_pred EEEEeCCcccccccHHHHHHHHHcCCcEEEEEeeccCCccc-----------------c---------------------
Q 007117 501 IQICTANPRNAIGNSMFLGFVKSCGADIGFQISEYAKHSEE-----------------R--------------------- 542 (617)
Q Consensus 501 i~v~~vDN~l~~~DP~flG~~~~~~~d~~~kvV~k~~~~~E-----------------~--------------------- 542 (617)
++|+|+||+.+.+||.|||||+.++++++++|++|+. +++ +
T Consensus 215 i~V~N~DNL~~~~D~~llg~~~~~~ad~~~~v~~k~~-~d~~~Gvl~~~~~~~~~~dg~~nvEyn~~~llEyse~p~e~~ 293 (505)
T 2oeg_A 215 MFVSNGDNLGATIDKRVLAYMEKEKIDFLMEVCRRTE-SDKKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADM 293 (505)
T ss_dssp EEEECTTCTTCCCCHHHHHHHHHHTCSEEEEEEECCT-TCCSSEEEEEEEEEECCSSSCCCEEEEEEEEEEGGGSCGGGH
T ss_pred EEEEECCccccccCHHHHHHHHhcCCcEEEEEEEecC-CccceeEEEEecccccccCCccccccCceeEEEeccCChhhh
Confidence 9999999964479999999999999999999998883 321 1
Q ss_pred --------------ccceeeHHHHHHhhhh---hccccccccccCCCcccccCCCcceecCCCCCeeEEEEEEecccCCC
Q 007117 543 --------------FNTMLSMNVMKKLTNH---INKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYSCLNAC 605 (617)
Q Consensus 543 --------------~~h~fs~~fl~~~~~~---~~~L~~H~a~Kkip~~~~~~~~g~~v~P~~pN~~K~E~fifD~f~~~ 605 (617)
+||+|+++||+++... ...||+|++.|++|+.+ |+.||++|||+||||+|+++
T Consensus 294 ~~~~g~~~f~~~Ninn~~~~l~~l~~~~~~~~~~~~Lp~~vn~K~i~~~d----------~~~~~~~qlE~~~~d~~~~~ 363 (505)
T 2oeg_A 294 ESFQDINKYSFFNTNNLWIRLPVLLETMQEHGGTLPLPVIRNEKTVDSSN----------SASPKVYQLETAMGAAIAMF 363 (505)
T ss_dssp HHHHCTTTTCEEEEEEEEEEHHHHHHHHHHTTSSCCCCCEEEEEESSSSC----------TTSCEEEEEECCGGGGGGSC
T ss_pred hcccCccccCeeEEEEEEEEHHHHHHHHhhhcCccCCcceecccccCCCC----------CCCCCeEEEeEHHHHHHHhc
Confidence 2699999999998664 23689999999998862 78899999999999999999
Q ss_pred CCCceEEEEec
Q 007117 606 SLDKVCVMEIT 616 (617)
Q Consensus 606 ~~~~~~~~ev~ 616 (617)
+ +++++||+
T Consensus 364 ~--~~~~~~V~ 372 (505)
T 2oeg_A 364 E--SASAIVVP 372 (505)
T ss_dssp T--TCEEEECC
T ss_pred C--cceEEEec
Confidence 8 99999986
No 8
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-46 Score=413.56 Aligned_cols=321 Identities=11% Similarity=0.112 Sum_probs=238.2
Q ss_pred hhHHhhhhhHHHHHHHHHHHHcCccccccccCCCC--HHHHHHHHHHHhcCCHHHHHHHHHhccCCccccchhhhhhhhh
Q 007117 235 EWKERKKFQKRLIAAKKKLREMEQQHVFHGFRFGE--KYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNATELMNATK 312 (617)
Q Consensus 235 ~~~~~~k~~~~~~~l~~~L~~~gQ~HLl~~~~~l~--~~ek~~L~~ql~~iD~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 312 (617)
+|++..+.++. .++++. |-++|+++. ++||++|.+||..++ .+++++.+...+. . .
T Consensus 3 ~~~~~~~~~~~-~~~~~~--------l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~---~-------- 60 (488)
T 2i5k_A 3 AFESNTNSVAA-SQMRNA--------LNKLADSSKLDDAARAKFENELDSFF-TLFRRYLVEKSSR-T---T-------- 60 (488)
T ss_dssp --------CHH-HHHHHH--------TTCCC--------CCSCTHHHHHHHH-HHHHHHHHHHHSC-C---S--------
T ss_pred chhhhhHHHHH-HHHHHH--------HHHHHhhcCCCHHHHHHHHHHHHHHH-HHHHHHHhccccc-C---C--------
Confidence 56666666654 345444 556678876 788899999998664 3344444321100 0 0
Q ss_pred hhhhcccccCCCCCCCCCCCchhhhccchhHHHhchhhhcCCceEEEEEccCCCCC-CCCCCCcccccCCCCcchHHHHH
Q 007117 313 AELMISSLKISGEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQT 391 (617)
Q Consensus 313 ~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK~~~i~l~s~kslf~l~~ 391 (617)
-.++.++|+|.+ .+. +.+.+. .|+ .|+ ++.||+|||+||||+||| |+..||++ +++++++||+++++
T Consensus 61 -~~~~~i~p~~~~-~~~---~~~~~~---~~~-~~~--~~~~k~avViLAGG~GTRmgs~~PK~l-~~V~~gk~~Le~~i 128 (488)
T 2i5k_A 61 -LEWDKIKSPNPD-EVV---KYEIIS---QQP-ENV--SNLSKLAVLKLNGGLGTSMGCVGPKSV-IEVREGNTFLDLSV 128 (488)
T ss_dssp -CCGGGEECCCTT-TEE---EHHHHH---SSC-CCS--TTGGGEEEEEECCCBSGGGTCCSBSTT-SCCBTTBCHHHHHH
T ss_pred -CcccccccCChh-ccc---Chhhcc---cch-hhh--hhcCCceEEEEcCCCcccCCCCCCccc-cccCCCCcHHHHHH
Confidence 012347888766 333 122221 111 244 446799999999999999 66669994 45678999999977
Q ss_pred HHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccceecccCCC---
Q 007117 392 LLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPW--- 468 (617)
Q Consensus 392 ~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FGl~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~--- 468 (617)
. +++++.. ..++.||||||||+.||+.|++||+++++||+ +|.||.|+++||++.+ |+++|+.++
T Consensus 129 ~--~i~~l~~-~~G~~Ip~vImts~~t~e~t~~~~~~~~~fg~---~i~~f~Q~~~P~i~~d------~~~~l~~~~~~~ 196 (488)
T 2i5k_A 129 R--QIEYLNR-QYDSDVPLLLMNSFNTDKDTEHLIKKYSANRI---RIRSFNQSRFPRVYKD------SLLPVPTEYDSP 196 (488)
T ss_dssp H--HHHHHHH-HHTCCCEEEEECCTTTHHHHHHHHGGGCSSSC---EEEEECCCCEECEETT------TCCBSCSSSSSC
T ss_pred H--HHHHhHH-hcCCCccEEEEECCCCHHHHHHHHHhccccCc---eEEEEEeCccceEccc------cceeeccCCCCC
Confidence 3 3334422 23578999999999999999999999999998 7999999999999998 799998775
Q ss_pred CcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCcccc-cccHHHHHHHHHcCCcEEEEEeeccCCcccc-----
Q 007117 469 ETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNA-IGNSMFLGFVKSCGADIGFQISEYAKHSEER----- 542 (617)
Q Consensus 469 ~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~-~~DP~flG~~~~~~~d~~~kvV~k~~~~~E~----- 542 (617)
+++++|+||||+|.+|..+|++++|.++|++|++|+|+|| |+ .+||.+||||..++++++++|+++. +|.++
T Consensus 197 ~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDn-L~~~~d~~~L~~~~~~~a~~t~~v~~~~-~p~~~yG~Iv 274 (488)
T 2i5k_A 197 LDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDN-LGATVDLKILNHMIETGAEYIMELTDKT-RADVKGGTLI 274 (488)
T ss_dssp TTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTB-SSCCCCHHHHHHHHHSCCSEEEEEEECC-GGGSSSCEEE
T ss_pred ceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCc-CCCcccHHHHHHHHhcCCcEEEEEEEec-CCCCceeEEE
Confidence 6999999999999999999999999999999999999999 67 5999999999999999999999987 34431
Q ss_pred ---------------------------------ccceeeHHHHHHhhhh-hccccccccccCCCcccccCCCcceecCCC
Q 007117 543 ---------------------------------FNTMLSMNVMKKLTNH-INKLEFYATPKLNSHVEKVDKEFIDVIPAA 588 (617)
Q Consensus 543 ---------------------------------~~h~fs~~fl~~~~~~-~~~L~~H~a~Kkip~~~~~~~~g~~v~P~~ 588 (617)
++|+|+.+||+++... ...||+|+|.|++|| + + +.
T Consensus 275 ~~dG~~~iVE~~e~~~e~~~~~~~~~~~~~~Ntgi~~f~~~~L~~~l~~~~~~lp~~v~~K~i~~-~--~--------~~ 343 (488)
T 2i5k_A 275 SYDGQVRLLEVAQVPKEHIDEFKNIRKFTNFNTNNLWINLKAVKRLIESSNLEMEIIPNQKTITR-D--G--------HE 343 (488)
T ss_dssp EETTEEEEECGGGSCTTSHHHHTCTTTCCEEEEEEEEEEHHHHHHHHHTTCCCCCCBCCEECCCC---------------
T ss_pred EECCcEEEEEeccCCHHHHhhcccccccCEEEEEEEEEeHHHHHHHHhhccCCCcceecCccccC-C--C--------CC
Confidence 2588999999998664 457999999999988 3 1 23
Q ss_pred CCeeEEEEEEecccCCCCCCceEEEEec
Q 007117 589 PNSYELRSSIYSCLNACSLDKVCVMEIT 616 (617)
Q Consensus 589 pN~~K~E~fifD~f~~~~~~~~~~~ev~ 616 (617)
+|++|||+||||+|++++ +++++||+
T Consensus 344 ~~~~qlE~~~~d~~~~~~--~~~~~~V~ 369 (488)
T 2i5k_A 344 INVLQLETACGAAIRHFD--GAHGVVVP 369 (488)
T ss_dssp -CEECCBCCGGGGGGGSS--SCEEEEEC
T ss_pred CceEEeeehhhhHHhhcc--CceEEEec
Confidence 589999999999999998 99999995
No 9
>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250, UDP, putative UDP-glucose pyrophosphorylase; HET: UPG U5P; 1.64A {Arabidopsis thaliana} SCOP: b.81.1.4 c.68.1.5 PDB: 2icx_A* 1z90_A 2q4j_A
Probab=100.00 E-value=1.3e-46 Score=412.80 Aligned_cols=287 Identities=14% Similarity=0.132 Sum_probs=229.7
Q ss_pred cCCHHHHHHHHHhccCCccccchhhhhhhhhhhhhcccccCCCCCCCCCCCchhhhccchhHHHhchhhhcCCceEEEEE
Q 007117 282 GINSKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKISGEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLV 361 (617)
Q Consensus 282 ~iD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~~Gl~~i~~gkvavvll 361 (617)
.+|+..+.++++.+...... . -..+.++|+|.+ .+.+..+ +..+.++++.|++++ |++|+|+|
T Consensus 23 ~~~~~~f~~~~~~~~~~~~~--~---------~~~~~i~p~~~~-~~~~~~~---~~~~~~~~~~g~~~l--~k~~vviL 85 (469)
T 2icy_A 23 ESEKSGFISLVSRYLSGEAQ--H---------IEWSKIQTPTDE-IVVPYEK---MTPVSQDVAETKNLL--DKLVVLKL 85 (469)
T ss_dssp HHHHHHHHHHHHHHC-----------------CCGGGCBCCCTT-TEEEGGG---SCCCCSCHHHHHHHH--TTEEEEEE
T ss_pred hhhHHHHHHHHHHHHhccCC--C---------CcccccccCCcc-cccChhh---cccchhhHHHHHHhh--ccceEEEE
Confidence 45666677777654322110 0 012357888776 3332221 111124678899998 79999999
Q ss_pred ccCCCCC-CCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCCCCCcEE
Q 007117 362 VHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVW 440 (617)
Q Consensus 362 AGG~GtR-g~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FGl~~~~v~ 440 (617)
|||+||| |+..||++ ++++++++|+|++++ +++++.+ ..++.||||||||..||+.|++||++|+|||+ +|+
T Consensus 86 AGGlGTRLg~~~PK~l-lpv~~gkp~Le~~i~--~l~~~~~-~~G~~ip~vimts~~t~e~t~~~f~~~~~fG~---~I~ 158 (469)
T 2icy_A 86 NGGLGTTMGCTGPKSV-IEVRDGLTFLDLIVI--QIENLNN-KYGCKVPLVLMNSFNTHDDTHKIVEKYTNSNV---DIH 158 (469)
T ss_dssp ECCBSGGGTCCSBGGG-SEEETTEEHHHHHHH--HHHHHHH-HHSCCCCEEEEECTTTHHHHHHHHGGGTTSSS---CEE
T ss_pred cCCccccCCCCCCccc-cccCCCCCHHHHHHH--HHHHHHH-hcCCCccEEEEeCCCCHHHHHHHHHhcccCCc---eEE
Confidence 9999999 55569994 556789999999873 2333322 22577999999999999999999999999998 899
Q ss_pred EEecCCcccccCCCCccccceecccCC---CCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCcccccccHHH
Q 007117 441 FLEEEKLPIVSRSPTEQNKFKILMKSP---WETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIGNSMF 517 (617)
Q Consensus 441 ~f~Q~~lP~~~~~~~g~~~gkill~~~---~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~~~DP~f 517 (617)
||.|+++||++.+ |+++|+++ ++++++|+||||+|++|+++|++++|.++|++|++|+|+||+.+.+||.|
T Consensus 159 ~f~Q~~~P~i~~e------~~~~l~~~~~~~~~e~~P~GtGG~~~~L~~sGll~~l~~~G~e~~~V~n~DnL~~~~d~~l 232 (469)
T 2icy_A 159 TFNQSKYPRVVAD------EFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTI 232 (469)
T ss_dssp EEECCCEECEETT------TTEEGGGGTCCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTCCCCHHH
T ss_pred EEEecceeeEccc------cCccccCCCCCccccCCcCCchHHHHHHHhcCcHHHHHhcCCCEEEEEECCcCCcccCHHH
Confidence 9999999999998 79999877 78999999999999999999999999999999999999999655799999
Q ss_pred HHHHHHcCCcEEEEEeeccCCcccc--------------------------------------ccceeeHHHHHHhhhh-
Q 007117 518 LGFVKSCGADIGFQISEYAKHSEER--------------------------------------FNTMLSMNVMKKLTNH- 558 (617)
Q Consensus 518 lG~~~~~~~d~~~kvV~k~~~~~E~--------------------------------------~~h~fs~~fl~~~~~~- 558 (617)
+|||.+++++++++|++|+ .|+++ ++|+|+++||+++...
T Consensus 233 l~~~~~~~a~~t~~v~~k~-~~~~~~Gvl~~~dg~~~vvE~~e~p~~~~~e~k~~~~~~~~N~g~y~~~~~~L~~i~~~~ 311 (469)
T 2icy_A 233 LKHLIQNKNEYCMEVTPKT-LADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKKLVEAD 311 (469)
T ss_dssp HHHHHHHTCSEEEEEEECC-TTCCSSCEEEEETTEEEEECGGGSCGGGHHHHHSSSSCCEEEEEEEEEEHHHHHHHHHTT
T ss_pred HHHHHHcCCCeeEEEEEec-cCCCceeEEEEECCEEEEEEEeccChhhhhhhccccccceeeEEEEEEcHHHHHHHHhcc
Confidence 9999999999999999998 44431 2488999999999764
Q ss_pred hccccccccccCCCcccccCCCcceecCCCCCeeEEEEEEecccCCCCCCceEEEEec
Q 007117 559 INKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYSCLNACSLDKVCVMEIT 616 (617)
Q Consensus 559 ~~~L~~H~a~Kkip~~~~~~~~g~~v~P~~pN~~K~E~fifD~f~~~~~~~~~~~ev~ 616 (617)
...||+|++.|++ | .+|++|||+|+||+|++++ +++++||+
T Consensus 312 ~~~lp~~v~~K~i------d---------~~~~~klE~~~~D~~~~~~--~~~~~~V~ 352 (469)
T 2icy_A 312 ALKMEIIPNPKEV------D---------GVKVLQLETAAGAAIRFFD--NAIGVNVP 352 (469)
T ss_dssp CCCCCCBCCEEEE------T---------TEEEECCBCCGGGGGGGST--TCEEEECC
T ss_pred cCCchhhccceec------C---------CCceEeehHhhHHHHHhcC--CeEEEEec
Confidence 3579999999997 2 2579999999999999998 99999985
No 10
>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae}
Probab=100.00 E-value=3.5e-43 Score=339.94 Aligned_cols=173 Identities=29% Similarity=0.432 Sum_probs=152.5
Q ss_pred eEEEEEEeccceeeeeEEEEeecCCccccccCCCceEEEEeecCcceeEEEEEEEeeeeCCCceEEEEecCCCCHHHHhc
Q 007117 26 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQARP 105 (617)
Q Consensus 26 ~v~IG~I~~~hGlkGevkv~~~td~p~~~f~~~~~~~l~~~~~g~~~~~~~~v~~~r~~~~~~~~ivkfegid~re~Ae~ 105 (617)
++.||+|++|||+||||||.++||+|+.+|. .+.+|+.. .| .+++++++++|.|+ +.++++|+||+|||+|++
T Consensus 2 ~v~vG~I~~~hGikGevkv~~~Td~pe~~~~-~~~~~l~~--~~--~~~~~~v~~~r~~~--~~~lvkf~gi~dr~~Ae~ 74 (177)
T 3h9n_A 2 IEVVGKLGSTYGIRGWLRIYSSTEQAESIFD-YQPWFLKI--KG--EWQSIELENWRYHN--HEIIVKLKGVDDREAAQI 74 (177)
T ss_dssp EEEEEEEEEECSSSSCEEEEECSSSSGGGGG-CCSEEEEE--TT--EEEEECEEEEEESS--SCEEEEESSCCSHHHHHT
T ss_pred EEEEEEEeCCCccCEEEEEEECCCCHHHhcC-CCEEEEec--CC--eEEEEEEEEEEEeC--CEEEEEEcCCCCHHHHHH
Confidence 6899999999999999999999999997665 56666643 22 35789999999985 579999999999999999
Q ss_pred ccCCeEEEeCCCCCCCCCCcccHhhccCcEEEEccCCeEeEEEEEeccCCCceEEEEEeccccccccCcccccccCCCCC
Q 007117 106 LVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDAS 185 (617)
Q Consensus 106 L~G~~l~v~~~~lp~L~e~EfY~~DLIG~~V~d~~~g~~lG~V~dV~~~ga~dllvV~~~~~~~~~~~~~~~~~~~~~~~ 185 (617)
|+|+.||++++++|+|++|||||+|||||+|++ .+|+.+|+|++|+++||||||+|+.... . ..+
T Consensus 75 L~G~~l~v~~~~lp~l~edE~Y~~dLiGl~V~~-~~g~~lG~V~~v~~~gandvl~V~~~~~-------------~-~~~ 139 (177)
T 3h9n_A 75 LANVEIGVDLSVFPELEEGDYYWHDLIGCTVVN-LEGYTMGTVTEMMETGSNDVLVVKANTK-------------D-AFG 139 (177)
T ss_dssp TTTCEEEEECCCCCCCSSSCGGGGGTTTCEEEE-TTCCEEEEEEEEEESSSCEEEEEECCTT-------------C-TTC
T ss_pred hcCCEEEEEHHHCCCCCCCCCCHHHhcCCEEEe-CCCCEEEEEEEEeeCCCcEEEEEEeccc-------------c-CCC
Confidence 999999999999999999999999999999997 5688999999999999999999985210 0 014
Q ss_pred CcEEEEecc-cCccceeecCCCEEEEeCCCCccccc
Q 007117 186 GRLVWIPFV-EEIVPIVDMNGREMQITPPKGLLELN 220 (617)
Q Consensus 186 gke~LIPfv-~~~V~~IDle~~~I~V~~peGLLel~ 220 (617)
++++||||+ ++||++||+++++|+|++|+||||..
T Consensus 140 ~~e~LIP~v~~~~V~~VDl~~~~I~v~~p~glle~~ 175 (177)
T 3h9n_A 140 KQERLIPFLYEQVVKRVDLTTKTIEVDWDAGFLEHH 175 (177)
T ss_dssp CSEEEEECCBTTTEEEEEGGGTEEEECCCSSTTCCC
T ss_pred CcEEEeeccchheEEEEeCCCCEEEEECCcchhhcc
Confidence 689999998 99999999999999999999999863
No 11
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=100.00 E-value=2.9e-43 Score=342.87 Aligned_cols=167 Identities=30% Similarity=0.501 Sum_probs=143.6
Q ss_pred CCCeEEEEEEeccceeeeeEEEEeecCCccccccCCCceEEEEeecCcceeEEEEEEEeeeeCCCceEEEEecCCCCHHH
Q 007117 23 GLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQ 102 (617)
Q Consensus 23 ~~~~v~IG~I~~~hGlkGevkv~~~td~p~~~f~~~~~~~l~~~~~g~~~~~~~~v~~~r~~~~~~~~ivkfegid~re~ 102 (617)
+++++.||+|++||||||||||.++||+|+ +|.....+|+.. .+ ..++++++++|.|+ +.++++|+||+|||+
T Consensus 17 ~~~~v~VG~I~~~hGikGeVkV~~~Td~pe-~~~~~~~~~l~~--~~--~~~~~~v~~~r~~~--~~~ivkf~gi~dr~~ 89 (187)
T 2f1l_A 17 ADDLVVIGKIVSVYGIRGEVKVYSFTDPLD-NLLDYRRWTLRR--DG--EIRQAELVRGRLHG--KVLAAKLKGLDDREE 89 (187)
T ss_dssp --CEEEEEEEEEEETTTTEEEEEECSSSGG-GGGGCCEEEEEE--TT--EEEEEEEEEEEEET--TEEEEEETTCCSHHH
T ss_pred CCCEEEEEEEeCCEeeCEEEEEEECCCCHH-HhccCCEEEEec--CC--cEEEEEEEEEEEEC--CEEEEEEeCCCCHHH
Confidence 377899999999999999999999999997 566566666532 12 35689999999885 579999999999999
Q ss_pred HhcccCCeEEEeCCCCCCCCCCcccHhhccCcEEEEccCCeEeEEEEEeccCCCceEEEEEeccccccccCcccccccCC
Q 007117 103 ARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSAS 182 (617)
Q Consensus 103 Ae~L~G~~l~v~~~~lp~L~e~EfY~~DLIG~~V~d~~~g~~lG~V~dV~~~ga~dllvV~~~~~~~~~~~~~~~~~~~~ 182 (617)
|++|+|+.|||+++++|+|++|||||+|||||+|++ .+|+.||+|++|+++||||||+|+..
T Consensus 90 Ae~L~G~~l~v~r~~lp~l~edEfY~~DLIGl~V~~-~~g~~lG~V~~v~~~ganDvlvV~~~----------------- 151 (187)
T 2f1l_A 90 ARTFTGYEICIPRSELPSLEEGEYYWHQLEGLKVID-QGRQLLGVIDHLLETGANDVMVVKPC----------------- 151 (187)
T ss_dssp HHTTTTCEEEEEGGGSCC-----CCHHHHTTCEEEE-TTSCEEEEEEEEECCSSSCEEEEECC-----------------
T ss_pred HHHhCCCEEEEEHHHCCCCCCCCEeHHHcCCeEEEe-CCCCEEEEEEEEccCCCcEEEEEEeC-----------------
Confidence 999999999999999999999999999999999997 56888999999999999999999841
Q ss_pred CCCC----cEEEEecccCccceeecCCCEEEEeCCCCc
Q 007117 183 DASG----RLVWIPFVEEIVPIVDMNGREMQITPPKGL 216 (617)
Q Consensus 183 ~~~g----ke~LIPfv~~~V~~IDle~~~I~V~~peGL 216 (617)
++ +++||||+++||++||+++++|+|++|+||
T Consensus 152 --~g~~~~ke~LIPfv~~~V~~VDle~~~I~V~~p~GL 187 (187)
T 2f1l_A 152 --AGSLDDRERLLPYTGQCVLSIDLAAGEMRVDWDADF 187 (187)
T ss_dssp --TTSSSSCCEEEECSTTTEEEEETTTTEEEECCCTTC
T ss_pred --CCCCCCcEEEEechHHhcCEEeCCCCEEEEeCCCCC
Confidence 34 799999999999999999999999999997
No 12
>2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural genomics, PSI-2, protein structure initiative; 2.40A {Acinetobacter calcoaceticus}
Probab=100.00 E-value=1.6e-42 Score=336.84 Aligned_cols=173 Identities=21% Similarity=0.315 Sum_probs=150.5
Q ss_pred CCCCCCeEEEEEEeccceeeeeEEEEeecCCccccccCCCceEEEEeecCcceeEEEEEEEeeeeCCCceEEEEecCCCC
Q 007117 20 SASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDT 99 (617)
Q Consensus 20 ~~~~~~~v~IG~I~~~hGlkGevkv~~~td~p~~~f~~~~~~~l~~~~~g~~~~~~~~v~~~r~~~~~~~~ivkfegid~ 99 (617)
|+.+++++.||+|++||||||||||+++||+|+ +|.....+|+.. .+ ..++++++++|.|+ +.++++|+||+|
T Consensus 5 ~~~~~~~v~vG~I~~~hGikGevkv~~~td~pe-~~~~~~~~~l~~--~~--~~~~~~v~~~r~~~--~~~ivkf~gi~d 77 (182)
T 2qgg_A 5 QNVPEDRIQIGQLRSAYGLNGWLWVYSNTEPMS-NMFDYLPWYIET--KA--GWQTVDVKRWKPHG--KGLVVSLKGVSD 77 (182)
T ss_dssp -CCCSSEEEEEEEEEEETTTTEEEEEECSSSGG-GGGGSSSEEEEE--TT--EEEEECEEEEEEET--TEEEEEETTCCS
T ss_pred cCCCCCEEEEEEEeCCcccCEEEEEEECCCCHH-HhccCCEEEEec--CC--cEEEEEEEEEEEcC--CEEEEEECCCCC
Confidence 555678999999999999999999999999998 566566666632 12 35689999999985 479999999999
Q ss_pred HHHHhcccCCeEEEeCCCCCCCCCCcccHhhccCcEEEEcc---CCeEeEEEEEeccCCCceEEEEEeccccccccCccc
Q 007117 100 VEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKE---TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEE 176 (617)
Q Consensus 100 re~Ae~L~G~~l~v~~~~lp~L~e~EfY~~DLIG~~V~d~~---~g~~lG~V~dV~~~ga~dllvV~~~~~~~~~~~~~~ 176 (617)
||+|++|+|+.|||+++++|+|++|||||+|||||+|++.. +|+.||+|++|+++||||||+|+...
T Consensus 78 r~~Ae~L~G~~l~v~~~~lp~l~ede~Y~~dLiGl~V~~~~~~~~g~~lG~V~~v~~~gandvl~V~~~~---------- 147 (182)
T 2qgg_A 78 RTGAESLVASNIWIAKSQLPKADVDEYYWSDLKGLTVLGLDDEEQEVNLGQIHELFETGANDVMVVRATP---------- 147 (182)
T ss_dssp HHHHHTTTTCEEEEETTCCCCCHHHHCCHHHHTTCEEEEECTTSCEEEEEEEEEEEECSSCEEEEEECCS----------
T ss_pred HHHHHHhCCCEEEEEHHHCCCCCCCcEeHHHhCCcEEEEcccCCCCcEEEEEEEEccCCCcEEEEEEecc----------
Confidence 99999999999999999999999999999999999999741 68899999999999999999998410
Q ss_pred ccccCCCCCC-cEEEEeccc-CccceeecCCCEEEEeCCCCc
Q 007117 177 ASSSASDASG-RLVWIPFVE-EIVPIVDMNGREMQITPPKGL 216 (617)
Q Consensus 177 ~~~~~~~~~g-ke~LIPfv~-~~V~~IDle~~~I~V~~peGL 216 (617)
.+++ +++|||| + +||++||+++++|+|++|+||
T Consensus 148 ------~~~g~ke~LIPf-~~~~V~~VDl~~~~I~v~~p~gl 182 (182)
T 2qgg_A 148 ------DSIDSEERMIPW-HKDVVQRVDLEAGRIYVNWGVDY 182 (182)
T ss_dssp ------SSSSSCCEEEEC-CTTTEEEEETTTTEEEESCCCC-
T ss_pred ------CCCCCeEEEeec-ChhhEeEEECCCCEEEEeCCCCC
Confidence 0135 7999999 9 999999999999999999997
No 13
>2dyi_A Probable 16S rRNA-processing protein RIMM; ribosomal protein S19, PRC-barrel, STRU genomics, NPPSFA; 2.00A {Thermus thermophilus} PDB: 3a1p_A 2dog_A
Probab=100.00 E-value=4.9e-40 Score=313.59 Aligned_cols=156 Identities=23% Similarity=0.380 Sum_probs=137.7
Q ss_pred CeEEEEEEeccceeeeeEEEEeecCCccccccCCCceEEEEeecCcceeEEEEEEEeeeeCCCceEEEEecCCCCHHHHh
Q 007117 25 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQAR 104 (617)
Q Consensus 25 ~~v~IG~I~~~hGlkGevkv~~~td~p~~~f~~~~~~~l~~~~~g~~~~~~~~v~~~r~~~~~~~~ivkfegid~re~Ae 104 (617)
+++.||+|++|||+|||||| +||+ +|.....+|+. .+ .++ +++++|.|+ +.+++||+||+|||+|+
T Consensus 2 ~~v~vG~I~~~hGikGevkv--~td~---~~~~~~~~~~~---~~--~~~--~v~~~r~~~--~~~ivkf~gi~~r~~Ae 67 (162)
T 2dyi_A 2 RLVEIGRFGAPYALKGGLRF--RGEP---VVLHLERVYVE---GH--GWR--AIEDLYRVG--EELVVHLAGVTDRTLAE 67 (162)
T ss_dssp CEEEEEEEEEECSSSSCEEE--EECG---GGGGCSEEEET---TT--EEE--EEEEEEEET--TEEEEEETTCCSHHHHH
T ss_pred CEEEEEEEeCCCccCeEEEE--EEch---HhcCCCEEEEe---CC--CEE--EEEEEEEEC--CEEEEEEcCCCCHHHHH
Confidence 78999999999999999999 8887 56655544432 12 222 899999884 58999999999999999
Q ss_pred cccCCeEEEeCCCCCCCCCCcccHhhccCcEEEEccCCeEeEEEEEeccCCCceEEEEEeccccccccCcccccccCCCC
Q 007117 105 PLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDA 184 (617)
Q Consensus 105 ~L~G~~l~v~~~~lp~L~e~EfY~~DLIG~~V~d~~~g~~lG~V~dV~~~ga~dllvV~~~~~~~~~~~~~~~~~~~~~~ 184 (617)
+|+|+.||++++++|+|++|||||+|||||+|+ .+|+.+|+|++|+++||||+|+|+..
T Consensus 68 ~L~G~~l~v~~~~lp~l~e~e~y~~dLiGl~V~--~~g~~lG~V~~v~~~ga~dvl~V~~~------------------- 126 (162)
T 2dyi_A 68 ALVGLRVYAEVADLPPLEEGRYYYFALIGLPVY--VEGRQVGEVVDILDAGAQDVLIIRGV------------------- 126 (162)
T ss_dssp TTTTCEEEEEGGGSCCCCTTCCCHHHHTTCEEE--ETTEEEEEEEEEEEETTEEEEEEEEC-------------------
T ss_pred HhCCCEEEEEHHHCCCCCCCcEeHHHhCCeEEE--ECCeEEEEEEEEccCCCceEEEEEeC-------------------
Confidence 999999999999999999999999999999999 46889999999999999999999852
Q ss_pred CC-----cEEEEecccCccceeecCCCEEEEeCCCCccc
Q 007117 185 SG-----RLVWIPFVEEIVPIVDMNGREMQITPPKGLLE 218 (617)
Q Consensus 185 ~g-----ke~LIPfv~~~V~~IDle~~~I~V~~peGLLe 218 (617)
++ +++||||+++||+ || +++|+|+||+||||
T Consensus 127 ~g~~~~~~e~LIPfv~~~V~-VD--~~~I~v~~p~glld 162 (162)
T 2dyi_A 127 GERLRDRAERLVPLQAPYVR-VE--EGSIHVDPIPGLFD 162 (162)
T ss_dssp CSSGGGSTTEEEETTCTTEE-EC--SSCEEECCCTTTCC
T ss_pred CCCcCcCcEEEEeccccEEE-EE--CCEEEEeCCchhcC
Confidence 34 7899999999999 99 99999999999985
No 14
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Probab=96.55 E-value=0.0078 Score=66.12 Aligned_cols=137 Identities=15% Similarity=0.210 Sum_probs=83.4
Q ss_pred CCceEEEEEccCCCCCCCCC-CCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH-CC
Q 007117 353 EGKKAMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD-ND 430 (617)
Q Consensus 353 ~gkvavvllAGG~GtRg~~~-pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~-~~ 430 (617)
.+.+|||+||||.|||+... ||-+ +++ .+|++++... +.+.+.+- . -++|.|+. ..+..+++|.+ .+
T Consensus 10 ~~~~~vvILAaG~GtRm~~~~pK~l-~pv-~gkp~i~~~l-----~~~~~~g~-~--~i~vv~~~-~~~~i~~~~~~~~~ 78 (501)
T 3st8_A 10 PGDTAVLVLAAGPGTRMRSDTPKVL-HTL-AGRSMLSHVL-----HAIAKLAP-Q--RLIVVLGH-DHQRIAPLVGELAD 78 (501)
T ss_dssp --CEEEEEEECSCCGGGCCSSCGGG-CEE-TTEEHHHHHH-----HHHHHHCC-S--EEEEEECT-THHHHHHHHHHHHH
T ss_pred CCCceEEEECCcCcccCCCCCCHHH-eEE-CChhHHHHHH-----HHHHhCCC-C--EEEEEeCC-CHHHHHHHHHHHHH
Confidence 36799999999999996544 9973 333 5788866644 34444321 1 35666764 56788999976 34
Q ss_pred CCCCCCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchH-HHHHhhCchhHHHHHcCceEEEEEeCCcc
Q 007117 431 HFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGV-FSLLSSHNIIKNLDELGVEYIQICTANPR 509 (617)
Q Consensus 431 ~FGl~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv-~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~ 509 (617)
.||. +|.+..|. .|-|-|+- +.++. .+...-..++.+.+-|..
T Consensus 79 ~~~~---~i~~~~q~---------------------------~~lGTa~Av~~a~~------~l~~~~~~~~lvl~gd~~ 122 (501)
T 3st8_A 79 TLGR---TIDVALQD---------------------------RPLGTGHAVLCGLS------ALPDDYAGNVVVTSGDTP 122 (501)
T ss_dssp HHTS---CCEEEECS---------------------------SCCCHHHHHHHHHT------TSCTTCCSEEEEEETTCT
T ss_pred hcCC---cEEEEEcC---------------------------CCCCcHHHHHHHHH------HhccccccceeeecCcce
Confidence 4564 45555442 13365553 22222 232333457777777877
Q ss_pred ccccc--HHHHHHHHHcCCcEEEEEeecc
Q 007117 510 NAIGN--SMFLGFVKSCGADIGFQISEYA 536 (617)
Q Consensus 510 l~~~D--P~flG~~~~~~~d~~~kvV~k~ 536 (617)
|...+ -.++-++...+++++.-+.+..
T Consensus 123 l~~~~~~~~l~~~h~~~~~~~ti~~~~~~ 151 (501)
T 3st8_A 123 LLDADTLADLIATHRAVSAAVTVLTTTLD 151 (501)
T ss_dssp TCCHHHHHHHHHHHHHTTCSEEEEEEECS
T ss_pred eecHHHHHHHHHHHhhccccceEeeeccC
Confidence 77432 3467788888988877665544
No 15
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=95.98 E-value=0.045 Score=54.50 Aligned_cols=126 Identities=8% Similarity=0.052 Sum_probs=77.7
Q ss_pred ceEEEEEccCCCCCCCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCC
Q 007117 355 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAF 434 (617)
Q Consensus 355 kvavvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FGl 434 (617)
++.+|+||||.|||.. +|.+ +++ .+|++++... +.+.+.+ + =.++|.|. ++.+.+++++ ||.
T Consensus 2 ~~~aiIlA~G~stRlp--~K~L-~~i-~GkPli~~~l-----~~l~~~~--~-~~ivVv~~---~~~i~~~~~~---~g~ 63 (252)
T 3oam_A 2 SFTVVIPARYQSTRLP--GKPL-ADI-GGKPMIQWVY-----EQAMQAG--A-DRVIIATD---DERVEQAVQA---FGG 63 (252)
T ss_dssp CEEEEEECCCCCSSST--TGGG-CEE-TTEEHHHHHH-----HHHHHTT--C-SEEEEEES---CHHHHHHHHH---TTC
T ss_pred ceEEEEecCcCCCCCC--Ccce-eeE-CCEEHHHHHH-----HHHHhCC--C-CeEEEECC---HHHHHHHHHH---cCC
Confidence 5889999999999963 6873 233 6889877655 4444322 2 14566663 5888899875 453
Q ss_pred CCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCccccc--
Q 007117 435 DSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAI-- 512 (617)
Q Consensus 435 ~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~~-- 512 (617)
++. +..+ -.|.|.|+++.++.. +...+-+++.+.+-|+++..
T Consensus 64 ---~v~---------~~~~------------------~~~~Gt~~~~~~~~~------l~~~~~d~vlv~~gD~Pli~~~ 107 (252)
T 3oam_A 64 ---VVC---------MTSP------------------NHQSGTERLAEVVAK------MAIPADHIVVNVQGDEPLIPPA 107 (252)
T ss_dssp ---EEE---------ECCT------------------TCCSHHHHHHHHHHH------TTCCTTSEEEECCTTCTTCCHH
T ss_pred ---EEE---------EcCC------------------CCCCcHHHHHHHHHh------cCcCCCCEEEEEeCCeeecCHH
Confidence 221 1111 134566777666542 21124679999999998872
Q ss_pred ccHHHHHHHHHcCCcEEEEEee
Q 007117 513 GNSMFLGFVKSCGADIGFQISE 534 (617)
Q Consensus 513 ~DP~flG~~~~~~~d~~~kvV~ 534 (617)
.--.++-.+...++++++-+++
T Consensus 108 ~i~~l~~~~~~~~~~~~~~~~~ 129 (252)
T 3oam_A 108 IIRQVADNLAACSAPMATLAVE 129 (252)
T ss_dssp HHHHHHHHHHHSSCSEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEeee
Confidence 1123456666678888766544
No 16
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=95.24 E-value=0.12 Score=52.21 Aligned_cols=125 Identities=6% Similarity=-0.031 Sum_probs=75.1
Q ss_pred ceEEEEEccCCCCCCCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCC
Q 007117 355 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAF 434 (617)
Q Consensus 355 kvavvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FGl 434 (617)
++.+|+||||.|||.. .|.+ +++ .+|++++... +++.+.+ + =.++|.|. ++.+.+++++ ||.
T Consensus 18 ~~~aIIlA~G~stRlp--~K~L-~~i-~GkPmi~~~l-----~~l~~~~--i-~~IvV~t~---~~~i~~~~~~---~g~ 79 (264)
T 3k8d_A 18 SFVVIIPARYASTRLP--GKPL-VDI-NGKPMIVHVL-----ERARESG--A-ERIIVATD---HEDVARAVEA---AGG 79 (264)
T ss_dssp CCEEEEECCSCCSSST--TGGG-CEE-TTEEHHHHHH-----HHHHHTT--C-SEEEEEES---CHHHHHHHHH---TTC
T ss_pred ceEEEEEcCCCCCCCC--Ccce-eeE-CCeEHHHHHH-----HHHHhCC--C-CEEEEECC---HHHHHHHHHH---cCC
Confidence 5899999999999962 4763 233 6888876654 4443322 2 14566663 5778888875 453
Q ss_pred CCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCccccc--
Q 007117 435 DSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAI-- 512 (617)
Q Consensus 435 ~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~~-- 512 (617)
++. +... ..|.|.|++..++.. +...+-+++.+.+-|+++..
T Consensus 80 ---~v~---------~~~~------------------~~~~Gt~~i~~~~~~------l~~~~~d~vlv~~gD~Pli~~~ 123 (264)
T 3k8d_A 80 ---EVC---------MTRA------------------DHQSGTERLAEVVEK------CAFSDDTVIVNVQGDEPMIPAT 123 (264)
T ss_dssp ---EEE---------ECCT------------------TCCSHHHHHHHHHHH------HTCCTTCEEEEECTTCTTCCHH
T ss_pred ---EEE---------EecC------------------CCCCCHHHHHHHHHH------hccCCCCEEEEEcCCcccCCHH
Confidence 111 1111 124566666665532 32235689999999999982
Q ss_pred ccHHHHHHHHHcCCcEEEEEe
Q 007117 513 GNSMFLGFVKSCGADIGFQIS 533 (617)
Q Consensus 513 ~DP~flG~~~~~~~d~~~kvV 533 (617)
.--.++-.+...++++++-++
T Consensus 124 ~i~~li~~~~~~~~~~~~~~~ 144 (264)
T 3k8d_A 124 IIRQVADNLAQRQVGMATLAV 144 (264)
T ss_dssp HHHHHHHHHHTSSCSEEEEEE
T ss_pred HHHHHHHHHhhcCCCEEEEEE
Confidence 112345555567888776554
No 17
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*
Probab=95.04 E-value=0.3 Score=48.72 Aligned_cols=133 Identities=3% Similarity=-0.007 Sum_probs=77.8
Q ss_pred CceEEEEEccCCCCCCC----CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHC
Q 007117 354 GKKAMVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN 429 (617)
Q Consensus 354 gkvavvllAGG~GtRg~----~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~ 429 (617)
..+.+|+||||.|||.. ..||.+ +++ .++++++... +.+.+.+ . =.++|.|.....+.+.+++...
T Consensus 23 ~~m~aiIlAaG~g~Rl~~lt~~~pK~l-l~i-~g~pli~~~l-----~~l~~~g--~-~~iivv~~~~~~~~~~~~~~~~ 92 (269)
T 4ecm_A 23 NAMKGIILAGGTGSRLYPITKVTNKHL-LPV-GRYPMIYHAV-----YKLKQCD--I-TDIMIITGKEHMGDVVSFLGSG 92 (269)
T ss_dssp -CEEEEEECCSCCGGGTTTTSSSCGGG-SEE-TTEEHHHHHH-----HHHHHTT--C-CEEEEEECTTTHHHHHHHHTTS
T ss_pred cCcEEEEECCCCccccccccCCCCcee-cEE-CCEEHHHHHH-----HHHHHCC--C-CEEEEECChhhHHHHHHHHhhc
Confidence 46788999999999932 349983 334 5899987765 4444422 2 2467777765557788888765
Q ss_pred CCCCCCCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCcc
Q 007117 430 DHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPR 509 (617)
Q Consensus 430 ~~FGl~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~ 509 (617)
..||+ ++.+..| . .+.|.|+. |.. .++.+. -+++.|.+.|++
T Consensus 93 ~~~~~---~i~~~~~--------~-------------------~~~G~~~a---l~~--a~~~~~---~~~~lv~~~D~~ 134 (269)
T 4ecm_A 93 QEFGV---SFTYRVQ--------D-------------------KAGGIAQA---LGL--CEDFVG---NDRMVVILGDNI 134 (269)
T ss_dssp GGGTC---EEEEEEC--------S-------------------SCCCHHHH---HHT--THHHHT---TSEEEEEETTEE
T ss_pred cccCc---eEEEeeC--------C-------------------ccCcHHHH---HHH--HHHhcC---CCcEEEEeCCcc
Confidence 55665 2322111 1 12344332 221 122221 468888888886
Q ss_pred cccccHHHHHHHHHcCCcEEEEEee
Q 007117 510 NAIGNSMFLGFVKSCGADIGFQISE 534 (617)
Q Consensus 510 l~~~DP~flG~~~~~~~d~~~kvV~ 534 (617)
+...--.++-.+..++++++.-+.+
T Consensus 135 ~~~~l~~l~~~~~~~~~~~~~~~~~ 159 (269)
T 4ecm_A 135 FSDDIRPYVEEFTNQKEGAKVLLQS 159 (269)
T ss_dssp ESSCSHHHHHHHHTSSSSEEEEEEE
T ss_pred CccCHHHHHHHHHhcCCCeEEEEEE
Confidence 6532233567777778887665543
No 18
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=94.67 E-value=0.25 Score=49.58 Aligned_cols=123 Identities=11% Similarity=0.044 Sum_probs=69.9
Q ss_pred ceEEEEEccCCCCCCCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCC
Q 007117 355 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAF 434 (617)
Q Consensus 355 kvavvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FGl 434 (617)
++.+|+||||.|||.. +|.+ +++ .+|++++... +++.+.+ . =.++|.|. ++.+.+++++ ||.
T Consensus 9 ~~~aIIlA~G~stRl~--~K~L-~~i-~GkPli~~~l-----~~l~~~~--i-~~VvVvt~---~~~i~~~~~~---~g~ 70 (256)
T 3tqd_A 9 EFRVIIPARFDSTRLP--GKAL-VDI-AGKPMIQHVY-----ESAIKSG--A-EEVVIATD---DKRIRQVAED---FGA 70 (256)
T ss_dssp CCEEEEECCCC---CT--TGGG-CEE-TTEEHHHHHH-----HHHHHTT--C-SEEEEEES---CHHHHHHHHH---TTC
T ss_pred CceEEEEcCCCCCCCC--CCCe-eeE-CCchHHHHHH-----HHHHhCC--C-CEEEEECC---HHHHHHHHHH---cCC
Confidence 6899999999999964 7873 233 6888876654 4443322 2 13456664 5788888875 453
Q ss_pred CCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCccccccc
Q 007117 435 DSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIGN 514 (617)
Q Consensus 435 ~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~~~D 514 (617)
++. +..+ -.|.|.++++.++.. +...+-+++.+.+-|+++. +
T Consensus 71 ---~v~---------~~~~------------------~~~~Gt~~i~~a~~~------l~~~~~d~vlv~~gD~Pli--~ 112 (256)
T 3tqd_A 71 ---VVC---------MTSS------------------DHQSGTERIAEAAVA------LGFEDDEIIVCLQGDEPLI--P 112 (256)
T ss_dssp ---EEE---------ECCT------------------TCCSHHHHHHHHHHH------TTCCTTCEEEEECTTCCCC--C
T ss_pred ---eEE---------EeCC------------------CCCCcHHHHHHHHHH------hCcCCCCEEEEEeCCcccC--C
Confidence 221 1111 124566666666532 2123568999999999998 3
Q ss_pred HH----HHHHHHHc-CCcEEEEEe
Q 007117 515 SM----FLGFVKSC-GADIGFQIS 533 (617)
Q Consensus 515 P~----flG~~~~~-~~d~~~kvV 533 (617)
|. ++-.+... ++++++-++
T Consensus 113 ~~~i~~li~~~~~~~~~~~a~l~~ 136 (256)
T 3tqd_A 113 PDAIRKLAEDLDEHDNVKVASLCT 136 (256)
T ss_dssp HHHHHHHHHHHHHCC--CEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCEEEEee
Confidence 33 34445443 567665554
No 19
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*
Probab=94.57 E-value=0.32 Score=47.40 Aligned_cols=123 Identities=7% Similarity=0.028 Sum_probs=71.8
Q ss_pred ceEEEEEccCCCCCCCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCC
Q 007117 355 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAF 434 (617)
Q Consensus 355 kvavvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FGl 434 (617)
++.+|+||||.|||.+ ||.+ +++ .++++++... +++.+. +..=.++|.|+. +.+.+++++. |.
T Consensus 2 ~~~aiIlA~G~~~R~~--~K~l-~~i-~g~pli~~~i-----~~~~~~--~~~~~ivvv~~~---~~i~~~~~~~---~~ 64 (245)
T 1h7e_A 2 KAVIVIPARYGSSRLP--GKPL-LDI-VGKPMIQHVY-----ERALQV--AGVAEVWVATDD---PRVEQAVQAF---GG 64 (245)
T ss_dssp CEEEEEECCSCCSSST--TGGG-CEE-TTEEHHHHHH-----HHHHTC--TTCCEEEEEESC---HHHHHHHHHT---TC
T ss_pred CeEEEEEcCCcCCCCC--CCcc-ccc-CCchHHHHHH-----HHHHhC--CCCCeEEEECCc---HHHHHHHHHc---CC
Confidence 5788999999999963 8973 233 5889877654 444332 111256777753 6777887753 32
Q ss_pred CCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCccccc--
Q 007117 435 DSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAI-- 512 (617)
Q Consensus 435 ~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~~-- 512 (617)
.+ +... . -.+.|.++++.++.. + +-+++.+.+.|+++..
T Consensus 65 ---~~----------~~~~-------------~----~~~~g~~~~~~~~~~------~---~~~~~lv~~~D~P~~~~~ 105 (245)
T 1h7e_A 65 ---KA----------IMTR-------------N----DHESGTDRLVEVMHK------V---EADIYINLQGDEPMIRPR 105 (245)
T ss_dssp ---EE----------EECC-------------S----CCSSHHHHHHHHHHH------S---CCSEEEECCTTCTTCCHH
T ss_pred ---eE----------EeCC-------------C----ccCCcHHHHHHHHHh------C---CCCEEEEEcCCcCcCCHH
Confidence 11 1110 0 012344566655542 1 4578999999998872
Q ss_pred -ccHHHHHHHHHc-CCcEEEEEee
Q 007117 513 -GNSMFLGFVKSC-GADIGFQISE 534 (617)
Q Consensus 513 -~DP~flG~~~~~-~~d~~~kvV~ 534 (617)
.+ .++-.+... +++++.-+++
T Consensus 106 ~i~-~l~~~~~~~~~~~~~~~~~~ 128 (245)
T 1h7e_A 106 DVE-TLLQGMRDDPALPVATLCHA 128 (245)
T ss_dssp HHH-HHHHHHHHCTTCCEEEEEEE
T ss_pred HHH-HHHHHHHhCCCCCEEEEeec
Confidence 22 244555556 7776554433
No 20
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0
Probab=94.00 E-value=0.74 Score=45.25 Aligned_cols=128 Identities=9% Similarity=0.000 Sum_probs=66.9
Q ss_pred ceEEEEEccCCCCC-CC-CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCC
Q 007117 355 KKAMVLVVHNSEEG-NE-CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHF 432 (617)
Q Consensus 355 kvavvllAGG~GtR-g~-~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~F 432 (617)
++.+|+||||.||| |. ..||.+ +++ .++++++... +.+.+. ..-=.++|.|+....+...+.+++..
T Consensus 3 ~~~aIIlAaG~g~Rm~~~~~pK~l-~~l-~Gkpll~~~l-----~~~~~~--~~~~~ivvv~~~~~~~~~~~~~~~~~-- 71 (246)
T 3f1c_A 3 LIYAQILAGGKGTRMGNVSMPKQF-LPL-NGKPIIVHTV-----EKFILN--TRFDKILISSPKEWMNHAEDNIKKYI-- 71 (246)
T ss_dssp CEEEEEECC-----C-CSSCCGGG-SEE-TTEEHHHHHH-----HHHHTC--TTCSEEEEEECGGGHHHHHHHHHHHC--
T ss_pred ccEEEEECCccccccCCCCCCCeE-EEE-CCeeHHHHHH-----HHHHcC--CCCCEEEEEeCHHHHHHHHHHHHHhC--
Confidence 57899999999999 55 349983 333 5789877654 444331 11125677777665555666666532
Q ss_pred CCCCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHH----cCceEEEEEeCCc
Q 007117 433 AFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDE----LGVEYIQICTANP 508 (617)
Q Consensus 433 Gl~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~----~Gi~yi~v~~vDN 508 (617)
.+ ..+.+. ++ .. ++ .++++.+|. .+.. .+-+++.|.+.|.
T Consensus 72 -~~-~~~~~~-~~------~~------~~---------------~~sv~~al~------~l~~~~~~~~~~~vlv~~~d~ 115 (246)
T 3f1c_A 72 -SD-DRIVVI-EG------GE------DR---------------NETIMNGIR------FVEKTYGLTDDDIIVTHDAVR 115 (246)
T ss_dssp -CC-TTEEEE-EC------CS------SH---------------HHHHHHHHH------HHHHHTCCCTTCEEEEEETTC
T ss_pred -CC-CCEEEE-CC------CC------ch---------------HHHHHHHHH------HHhhhhcCCCCCEEEEecCcc
Confidence 11 112211 00 00 11 125666554 3433 2468999999999
Q ss_pred cccc--ccHHHHHHHHHcCCcEE
Q 007117 509 RNAI--GNSMFLGFVKSCGADIG 529 (617)
Q Consensus 509 ~l~~--~DP~flG~~~~~~~d~~ 529 (617)
+++. .--.++-.+...++.+.
T Consensus 116 Pli~~~~i~~li~~~~~~~a~i~ 138 (246)
T 3f1c_A 116 PFLTHRIIEENIDAALETGAVDT 138 (246)
T ss_dssp TTCCHHHHHHHHHHHHHTSEEEE
T ss_pred cCCCHHHHHHHHHHHHhcCCEEE
Confidence 9882 22234566666665544
No 21
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}
Probab=93.85 E-value=0.87 Score=43.96 Aligned_cols=132 Identities=12% Similarity=0.102 Sum_probs=74.7
Q ss_pred EEEEEccCCCCCCCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCCCC
Q 007117 357 AMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDS 436 (617)
Q Consensus 357 avvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FGl~~ 436 (617)
.+|+||||.|+|.+ .+|.+ +++ .++++++... +.+.. . +++|.|.. .+.... +.+. +|+
T Consensus 2 ~aiILAgG~s~Rmg-~~K~l-l~~-~G~pli~~~~-----~~l~~----~--~vvvv~~~--~~~~~~-~~~~--~~~-- 60 (208)
T 3ngw_A 2 KVAVLVGGVGRRIG-MEKTE-VML-CGKKLIEWVL-----EKYSP----F--QTVFVCRD--EKQAEK-LSSR--YEA-- 60 (208)
T ss_dssp EEEEECCCCCTTTT-SCGGG-CEE-TTEEHHHHHH-----HHHTT----S--EEEEECSS--HHHHHH-HHTT--SCS--
T ss_pred EEEEECCCchhhCC-CCCcc-cEE-CCeeHHHHHH-----HHhcC----C--CEEEEECC--HHHHHH-HHHh--cCC--
Confidence 57899999999943 78883 233 6888866654 33332 2 77888853 233333 3321 232
Q ss_pred CcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCc---hHHHHHhhCchhHHHHHcCceEEEEEeCCcccccc
Q 007117 437 KKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSG---GVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIG 513 (617)
Q Consensus 437 ~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnG---gv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~~~ 513 (617)
+++... +.|.| +++.+|.. + -+++ |...|.+++
T Consensus 61 -----------~~v~d~--------------------~~~~G~~~si~~gl~~------~----~~~v-v~~~D~P~i-- 96 (208)
T 3ngw_A 61 -----------EFIWDL--------------------HKGVGSIAGIHAALRH------F----GSCV-VAAIDMPFV-- 96 (208)
T ss_dssp -----------CEECCT--------------------TCCCSHHHHHHHHHHH------H----SSEE-EEETTCTTC--
T ss_pred -----------eEEecC--------------------CCCCChHHHHHHHHHH------c----CCCE-EEECCccCC--
Confidence 222111 12333 56666543 2 3689 999999988
Q ss_pred cHHHH----HHHHHcCCcEEEEEeeccCCccccccceeeHHHHHHhhh
Q 007117 514 NSMFL----GFVKSCGADIGFQISEYAKHSEERFNTMLSMNVMKKLTN 557 (617)
Q Consensus 514 DP~fl----G~~~~~~~d~~~kvV~k~~~~~E~~~h~fs~~fl~~~~~ 557 (617)
+|-.+ ..+...+.++..-+ . ...+.+--+|+.+++..+..
T Consensus 97 ~~~~i~~l~~~~~~~~~~~v~~~---~-g~~~Pl~al~~~~~~~~l~~ 140 (208)
T 3ngw_A 97 KPEVLEHLYKEGEKAGCDALIPK---H-DYPEPLLAYYAESAADELER 140 (208)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEE---S-SSBCTTEEEECGGGHHHHHH
T ss_pred CHHHHHHHHHHhhcCCCCEEEEc---C-CCeeEEEEEEcHHHHHHHHH
Confidence 34333 43333477765433 3 23455555688877776543
No 22
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=93.79 E-value=0.95 Score=43.53 Aligned_cols=127 Identities=9% Similarity=0.040 Sum_probs=71.2
Q ss_pred ceEEEEEccCCCCCCCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCC
Q 007117 355 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAF 434 (617)
Q Consensus 355 kvavvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FGl 434 (617)
++++|+||||.|||.+ ||.+ +++ .++++++... +++.+.+ .. =.++|.|. ++.+.+++++ +|.
T Consensus 4 ~~~aiIlA~G~g~R~~--~K~l-~~i-~gkpll~~~l-----~~~~~~~-~~-~~ivvv~~---~~~i~~~~~~---~~~ 66 (228)
T 1ezi_A 4 QNIAVILARQNSKGLP--LKNL-RKM-NGISLLGHTI-----NAAISSK-CF-DRIIVSTD---GGLIAEEAKN---FGV 66 (228)
T ss_dssp EEEEEEECCSSCSSST--TTTT-CEE-TTEEHHHHHH-----HHHHHHC-CC-SEEEEEES---CHHHHHHHHH---TTC
T ss_pred ceEEEEecCCCCCCCC--Cccc-cee-CCcCHHHHHH-----HHHHhCC-CC-CEEEEECC---CHHHHHHHHH---cCC
Confidence 5788999999999954 8873 233 5889977654 4443322 11 15667664 4566777765 343
Q ss_pred CCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCc---hHHHHHhhCchhHHHHHcCceEEEEEeCCcccc
Q 007117 435 DSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSG---GVFSLLSSHNIIKNLDELGVEYIQICTANPRNA 511 (617)
Q Consensus 435 ~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnG---gv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~ 511 (617)
++ +. .. .. +...|.| +++.+|. .+ ..+.+++.+.+.|+++.
T Consensus 67 ---~~--~~--------~~--------------~~--~~~~~~g~~~sv~~~l~------~~-~~~~d~vlv~~~D~P~~ 110 (228)
T 1ezi_A 67 ---EV--VL--------RP--------------AE--LASDTASSISGVIHALE------TI-GSNSGTVTLLQPTSPLR 110 (228)
T ss_dssp ---EE--EE--------CC--------------C--------CHHHHHHHHHHH------HH-TCCSEEEEECCTTCTTC
T ss_pred ---EE--Ee--------Cc--------------hH--HcCCCCChHHHHHHHHH------Hh-CCCCCEEEEEcCCCCcC
Confidence 22 11 11 00 1112222 3444433 23 23568999999999988
Q ss_pred cccHHHHHHHH----HcCCcEEEEEeecc
Q 007117 512 IGNSMFLGFVK----SCGADIGFQISEYA 536 (617)
Q Consensus 512 ~~DP~flG~~~----~~~~d~~~kvV~k~ 536 (617)
+|..+-..+ ..++++..-+++..
T Consensus 111 --~~~~i~~l~~~~~~~~~~~~~~~~~~~ 137 (228)
T 1ezi_A 111 --TGAHIREAFSLFDEKIKGSVVSACPME 137 (228)
T ss_dssp --CHHHHHHHHTTCCTTTCCCEEEEEECS
T ss_pred --CHHHHHHHHHHHHhcCCCEEEEEEecC
Confidence 444444333 44667777666655
No 23
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}
Probab=93.61 E-value=0.44 Score=45.93 Aligned_cols=57 Identities=11% Similarity=0.174 Sum_probs=37.2
Q ss_pred ceEEEEEccCCCCCCCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHH
Q 007117 355 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 427 (617)
Q Consensus 355 kvavvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~ 427 (617)
++.+|+||||.|||.+ ||.+ +++ .++++++... +++.+. . -.++|.|.. +.+.++++
T Consensus 2 ~~~aiIlA~G~g~R~~--~K~l-~~i-~g~pli~~~l-----~~~~~~---~-~~i~v~~~~---~~i~~~~~ 58 (234)
T 2y6p_A 2 RRAVIIPARLGSTRLK--EKPL-KNL-LGKPLIRWVV-----EGLVKT---G-ERVILATDS---ERVKEVVE 58 (234)
T ss_dssp CEEEEEECCSCCTTTT--TGGG-CEE-TTEEHHHHHH-----HHHHTT---T-SCEEEEESC---HHHHHHHT
T ss_pred ceEEEEEcCCCCCCCC--CCcc-eeE-CCEEHHHHHH-----HHHHHh---C-CEEEEECCh---HHHHHHHH
Confidence 4778999999999954 8983 233 5789977654 344331 2 145676654 56667665
No 24
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}
Probab=93.38 E-value=0.79 Score=42.67 Aligned_cols=143 Identities=13% Similarity=0.039 Sum_probs=78.6
Q ss_pred ceEEEEEccCCCCCCCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCC
Q 007117 355 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAF 434 (617)
Q Consensus 355 kvavvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FGl 434 (617)
++.+|+||||.|||.+ .||.+ +++ .++++++... +.+... +. =.++|.|+.. ++...+++.+ +|+
T Consensus 5 ~~~~iIlA~G~~~R~g-~~K~l-~~~-~g~pli~~~l-----~~l~~~--~~-~~i~vv~~~~-~~~~~~~~~~---~~~ 69 (199)
T 2waw_A 5 RVTGVVLAAGYSRRLG-TPKQL-LPL-GDTTLLGATL-----AMARRC--PF-DQLIVTLGGA-ADEVLEKVEL---DGL 69 (199)
T ss_dssp CEEEEEEESSCCTTTT-SCGGG-CEE-TTEEHHHHHH-----HHHHTS--SC-SEEEEEECTT-HHHHHHHSCC---TTS
T ss_pred ceEEEEECCCCCCCCC-CCEEe-CEe-CccCHHHHHH-----HHHHhC--CC-CcEEEEeCCC-HHHHHHHhcc---CCC
Confidence 5788999999999953 68873 233 5788877654 444332 11 2567777643 3455554432 232
Q ss_pred CCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCC-CchHHHHHhhCchhHHHHHcCceEEEEEeCCcccccc
Q 007117 435 DSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVG-SGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIG 513 (617)
Q Consensus 435 ~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~G-nGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~~~ 513 (617)
.+ +... . .+.| .++++.+|... ..+.+++.+...|.++.
T Consensus 70 ---~~----------~~~~-------------~-----~~~g~~~~i~~al~~~-------~~~~~~vlv~~~D~P~~-- 109 (199)
T 2waw_A 70 ---DI----------VLVD-------------D-----AGLGCSSSLKSALTWV-------DPTAEGIVLMLGDQPGI-- 109 (199)
T ss_dssp ---EE----------EECC-------------C-----CCTTCCCHHHHHHHTS-------CTTCSEEEEEETTCTTC--
T ss_pred ---EE----------EECC-------------C-----cccCHHHHHHHHHHhh-------hccCCeEEEEeCCcccC--
Confidence 11 1111 0 1123 45778777542 12568999999999987
Q ss_pred cHHHHHHHH--HcCCcEEEEEeeccCCccccccceeeHHHHHHhh
Q 007117 514 NSMFLGFVK--SCGADIGFQISEYAKHSEERFNTMLSMNVMKKLT 556 (617)
Q Consensus 514 DP~flG~~~--~~~~d~~~kvV~k~~~~~E~~~h~fs~~fl~~~~ 556 (617)
+|..+-... ..++++..-+..-. +.. -.+|+.+.+..+.
T Consensus 110 ~~~~i~~l~~~~~~~~~~~~~~~g~--~~~--P~~~~~~~l~~~~ 150 (199)
T 2waw_A 110 TASAVASLIAGGRGATIAVCEYANG--IGH--PFWVSRGVFGDLA 150 (199)
T ss_dssp CHHHHHHHHHHHTTCSEEEEEETTE--EEE--EEEEEGGGHHHHH
T ss_pred CHHHHHHHHhhcCCCCEEEEecCCc--ccC--CEEEcHHHHHHHH
Confidence 333332222 45666654332111 111 1378888777654
No 25
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=93.29 E-value=0.17 Score=50.04 Aligned_cols=130 Identities=11% Similarity=0.088 Sum_probs=73.0
Q ss_pred CceEEEEEccCCCCC-CCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCC
Q 007117 354 GKKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHF 432 (617)
Q Consensus 354 gkvavvllAGG~GtR-g~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~F 432 (617)
|++++|+||||.||| |+..||.+ +++ .++++++... +.+.+.. .+ =.++|.|+....+...+++..
T Consensus 6 ~~~~aIIlAaG~g~Rmg~~~~K~l-~~l-~Gkpll~~~l-----~~~~~~~-~~-~~ivVv~~~~~~~~~~~~~~~---- 72 (231)
T 3q80_A 6 GEVVAIVPAAGSGERLAVGVPKAF-YQL-DGQTLIERAV-----DGLLDSG-VV-DTVVVAVPADRTDEARQILGH---- 72 (231)
T ss_dssp CCEEEEEECCCCCTTTCSSSCGGG-CEE-TTEEHHHHHH-----HHHHHTS-CC-CEEEEEECGGGHHHHHHHHGG----
T ss_pred CceEEEEECCCCCccCCCCCCceE-EEE-CCeEHHHHHH-----HHHHhCC-CC-CeEEEECChHHHHHHHHHhcC----
Confidence 368999999999999 55559983 333 6899976654 4443311 11 256777776655666665532
Q ss_pred CCCCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCccccc
Q 007117 433 AFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAI 512 (617)
Q Consensus 433 Gl~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~~ 512 (617)
.+.+. . . |. .. ..+++.+|.. +..- .+.+|+.|+..|-+++
T Consensus 73 -----~v~~v--------~-g------g~------~r-------~~sv~~gl~~---~~~~--~~~d~Vlv~~~d~Pli- 113 (231)
T 3q80_A 73 -----RAMIV--------A-G------GS------NR-------TDTVNLALTV---LSGT--AEPEFVLVHDAARALT- 113 (231)
T ss_dssp -----GCEEE--------E-C------CS------SH-------HHHHHHHHGG---GC-----CCSEEEECCTTCTTC-
T ss_pred -----CeEEE--------c-C------CC------ch-------HHHHHHHHHH---hhhc--CCCCEEEEEcCCcCCC-
Confidence 11111 1 1 10 00 1356666653 1110 1367999999999998
Q ss_pred ccHHHHHHHHH---cCCcEEEEEeecc
Q 007117 513 GNSMFLGFVKS---CGADIGFQISEYA 536 (617)
Q Consensus 513 ~DP~flG~~~~---~~~d~~~kvV~k~ 536 (617)
+|-.|-.++. .+.+.+.-+++-.
T Consensus 114 -~~~~i~~li~~~~~~~~~~i~~~p~~ 139 (231)
T 3q80_A 114 -PPALVARVVEALRDGYAAVVPVLPLS 139 (231)
T ss_dssp -CHHHHHHHHHHHHTTCSEEEEEECCS
T ss_pred -CHHHHHHHHHHHhhcCCeEEEEEecc
Confidence 4444443332 2356666555433
No 26
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}
Probab=93.20 E-value=0.15 Score=52.16 Aligned_cols=68 Identities=15% Similarity=0.049 Sum_probs=39.4
Q ss_pred ceEEEEEccCCCCCC---C--CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHC
Q 007117 355 KKAMVLVVHNSEEGN---E--CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN 429 (617)
Q Consensus 355 kvavvllAGG~GtRg---~--~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~ 429 (617)
++.+|+||||.|||. . ..||.+ +++..++++++... +++.+. . -.++|.|+....+.+.+++.+.
T Consensus 4 ~~~avIlAgG~gtRl~plt~~~~pK~l-l~i~gg~pli~~~l-----~~l~~~---~-~~i~vv~~~~~~~~i~~~~~~~ 73 (308)
T 2qh5_A 4 KIKNILLSGGSGKRLWPLSRSLYPKQF-LKLFDHKSLFELSF-----KRNASL---V-DETLIVCNEKHYFLALEEIKNE 73 (308)
T ss_dssp CEEEEEECC-------------CCGGG-CTTBTTBCHHHHHH-----HHHHTT---C-SEEEEEEEGGGHHHHHHHTTTT
T ss_pred ccEEEEEcCCCCccCCccCCCCCCCEE-EECCCCCCHHHHHH-----HHHHcc---C-CCEEEEEChhHHHHHHHHHHHh
Confidence 467889999999995 3 349984 34445899987655 444331 1 2567888776556778888653
Q ss_pred CCCCC
Q 007117 430 DHFAF 434 (617)
Q Consensus 430 ~~FGl 434 (617)
||+
T Consensus 74 --~~~ 76 (308)
T 2qh5_A 74 --IKN 76 (308)
T ss_dssp --CSS
T ss_pred --hCC
Confidence 454
No 27
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}
Probab=93.18 E-value=0.21 Score=51.11 Aligned_cols=78 Identities=9% Similarity=0.024 Sum_probs=51.7
Q ss_pred ceEEEEEccCCCCCCCCCCCcccccCC-CCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCC
Q 007117 355 KKAMVLVVHNSEEGNECDPHSVVSEST-ANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 433 (617)
Q Consensus 355 kvavvllAGG~GtRg~~~pK~~~i~l~-s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FG 433 (617)
++.+|+||||.|||... ||.+ +++. .++++++... +++.+.+ . -.++|.|.....+..+++|.....++
T Consensus 5 ~~~~vIlAaG~g~R~~~-~K~l-~~ig~~g~pli~~~l-----~~~~~~~--~-~~i~vv~~~~~~~~~~~~~~~~~~~~ 74 (303)
T 3pnn_A 5 KPTLFVLAAGMGSRYGS-LKQL-DGIGPGGDTIMDYSV-----YDAIRAG--F-GRLVFVIRHSFEKEFREKILTKYEGR 74 (303)
T ss_dssp CCEEEEECTTCBCTTSS-BCCC-CCCSTTSCCHHHHHH-----HHHHHHT--C-CEEEEEECGGGHHHHHHHTHHHHTTT
T ss_pred ceEEEEECCCCcccCCC-CceE-eEcCCCCeeHHHHHH-----HHHHHCC--C-CeEEEEcCchHHHHHHHHHHHHhccC
Confidence 46789999999999543 7873 3453 5889877655 3443322 1 24677777665688888887643344
Q ss_pred CCCCcEEEEecC
Q 007117 434 FDSKKVWFLEEE 445 (617)
Q Consensus 434 l~~~~v~~f~Q~ 445 (617)
+ +|.+..|.
T Consensus 75 ~---~i~~~~~~ 83 (303)
T 3pnn_A 75 I---PVELVFQE 83 (303)
T ss_dssp S---CEEEEECC
T ss_pred C---cEEEEecc
Confidence 3 57777776
No 28
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=92.81 E-value=1.1 Score=43.30 Aligned_cols=127 Identities=12% Similarity=0.105 Sum_probs=70.5
Q ss_pred ceEEEEEccCCCCCCCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCC
Q 007117 355 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAF 434 (617)
Q Consensus 355 kvavvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FGl 434 (617)
++++|+||||.|||.. +|.+ +++ .++++++... +.+.+.+. . -.++|.| .++.+.+++++ +|.
T Consensus 3 ~~~aiIlA~G~s~R~~--~K~l-~~i-~Gkpli~~~i-----~~~~~~~~-~-~~ivv~~---~~~~i~~~~~~---~g~ 65 (229)
T 1qwj_A 3 HLAALVLARGGSKGIP--LKNI-KRL-AGVPLIGWVL-----RAALDAGV-F-QSVWVST---DHDEIENVAKQ---FGA 65 (229)
T ss_dssp CEEEEEECCSCCSSSS--CTTT-SEE-TTEEHHHHHH-----HHHHHHTC-C-SEEEEEE---SCHHHHHHHHH---TTC
T ss_pred cEEEEEEcCCCCCCCC--Cccc-ceE-CCEEHHHHHH-----HHHHhCCC-c-CEEEEEC---ChHHHHHHHHH---cCC
Confidence 5888999999999953 3763 233 5888877654 34433221 1 1456666 35677788765 353
Q ss_pred CCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCccccc--
Q 007117 435 DSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAI-- 512 (617)
Q Consensus 435 ~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~~-- 512 (617)
++ +.+ .+ .+. .-.+.|.+.+..+|..- .+-+++.+.+.|+++..
T Consensus 66 ---~~--~~~-------~~-------~~~-------~~~~~~~~~v~~al~~~--------~~~d~vlv~~~D~Pli~~~ 111 (229)
T 1qwj_A 66 ---QV--HRR-------SS-------ETS-------KDSSTSLDAIVEFLNYH--------NEVDIVGNIQATSPCLHPT 111 (229)
T ss_dssp ---EE--EEC-------CG-------GGS-------STTCCHHHHHHHHHTTC--------TTCSEEEEECTTCTTCCHH
T ss_pred ---EE--EeC-------hh-------hhc-------CCCCcHHHHHHHHHHhc--------CCCCEEEEecCCCCcCCHH
Confidence 22 211 10 000 00112223455555431 24678999999999982
Q ss_pred -ccHHHHHHHHHcCCcEEEEEe
Q 007117 513 -GNSMFLGFVKSCGADIGFQIS 533 (617)
Q Consensus 513 -~DP~flG~~~~~~~d~~~kvV 533 (617)
++ .++..+...++++..-++
T Consensus 112 ~i~-~l~~~~~~~~~~~~~~~~ 132 (229)
T 1qwj_A 112 DLQ-KVAEMIREEGYDSVFSVV 132 (229)
T ss_dssp HHH-HHHHHHHSSCCSEEEEEE
T ss_pred HHH-HHHHHHHhCCCCEEEEEe
Confidence 22 245555566777655444
No 29
>1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1
Probab=92.59 E-value=0.23 Score=50.05 Aligned_cols=82 Identities=27% Similarity=0.372 Sum_probs=58.6
Q ss_pred cCCeEEEeCCCCCCCC-CCc-----------cc----HhhccCcEEEEccCCeEeEEEEEec---cCCCceEEEEEeccc
Q 007117 107 VGSTLLAREGDRPELE-DGE-----------FY----TRDLVGMRVVMKETGELVGTVVNVF---NSGANDLLHVMCYSS 167 (617)
Q Consensus 107 ~G~~l~v~~~~lp~L~-e~E-----------fY----~~DLIG~~V~d~~~g~~lG~V~dV~---~~ga~dllvV~~~~~ 167 (617)
+|---|++|.+.|+|. +|+ |. -.||+|++|++ .+|+.||+|.+++ .++.--.++|.+.
T Consensus 111 vgp~~~a~r~d~p~~~~~g~~~i~pL~~~~d~~~~~~~~dl~G~~Vya-~DGekIG~V~Dv~vD~~sG~VrYlVVdtG-- 187 (259)
T 1eys_H 111 FGPAASPDRPKHCDLTFEGLPKIVPMRVAKEFSIAEGDPDPRGMTVVG-LDGEVAGTVSDVWVDRSEPQIRYLEVEVA-- 187 (259)
T ss_dssp CGGGCCCCCCSSCCBCSSCSBSSEETTTSTTCEECTTSCCCTTCEEEC-SSSCEEEEEEEEEEETTTTEEEEEEEEET--
T ss_pred cCchhccccCCCcccCCCCCeEEEEEEecCCcccccCCCCCcCCEEEe-CCCCeeEEEEEEEEECCCCeEEEEEEEcC--
Confidence 3455677777777773 332 32 35699999995 5798999999997 3555567778752
Q ss_pred cccccCcccccccCCCCCCcEEEEecccCccceeecCCCEEEE
Q 007117 168 VNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREMQI 210 (617)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~gke~LIPfv~~~V~~IDle~~~I~V 210 (617)
..++++|||.- +..||-+++++.|
T Consensus 188 ----------------~ggkkVLiPi~---~~~Id~d~~~V~V 211 (259)
T 1eys_H 188 ----------------ANKKKVLLPIG---FSRFDKKARKVKV 211 (259)
T ss_dssp ----------------TTCCEEEEEGG---GCEEEGGGTEEEC
T ss_pred ----------------CCCCcEEEecC---hhhccccCCEEEE
Confidence 14688999953 5688888888888
No 30
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...
Probab=92.04 E-value=0.24 Score=50.40 Aligned_cols=70 Identities=7% Similarity=0.155 Sum_probs=44.4
Q ss_pred ceEEEEEccCCCCCCC----CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCC
Q 007117 355 KKAMVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDND 430 (617)
Q Consensus 355 kvavvllAGG~GtRg~----~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~ 430 (617)
++.+|+||||.|||.. ..||.+ +++ .+|++++... +.+...+ .. .++|.|+....+..++++....
T Consensus 2 ~~~aIILAgG~gtRl~plT~~~pK~l-lpi-~gkpli~~~l-----~~l~~~g--i~-~I~vv~~~~~~~~i~~~l~~g~ 71 (293)
T 1fxo_A 2 KRKGIILAGGSGTRLHPATLAISKQL-LPV-YDKPMIYYPL-----STLMLAG--IR-EILIISTPQDTPRFQQLLGDGS 71 (293)
T ss_dssp CEEEEEECCCCCTTTTTHHHHSCGGG-SEE-TTEETTHHHH-----HHHHHTT--CC-EEEEEECTTTHHHHHHHHTTSG
T ss_pred CceEEEECCCCCCcCccccCCCCcee-CeE-CCEeHHHHHH-----HHHHHCC--CC-EEEEEeccccHHHHHHHHhccc
Confidence 3567889999999964 248973 233 4688877655 4443322 21 3456666666677888887644
Q ss_pred CCCC
Q 007117 431 HFAF 434 (617)
Q Consensus 431 ~FGl 434 (617)
.||+
T Consensus 72 ~~g~ 75 (293)
T 1fxo_A 72 NWGL 75 (293)
T ss_dssp GGTC
T ss_pred ccCc
Confidence 4564
No 31
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*
Probab=91.96 E-value=0.24 Score=47.41 Aligned_cols=63 Identities=13% Similarity=0.091 Sum_probs=38.6
Q ss_pred ceEEEEEccCCCCC-CCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHH
Q 007117 355 KKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLF 426 (617)
Q Consensus 355 kvavvllAGG~GtR-g~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff 426 (617)
++.+|+||||.||| +...||.+ +++ .++++++... +++.+.+ .. =.++|.|+....+...+++
T Consensus 2 ~~~~vIlA~G~g~R~~~~~~K~l-~~~-~g~pli~~~l-----~~l~~~~-~~-~~i~vv~~~~~~~~~~~~~ 65 (223)
T 2xwl_A 2 ATVAVVPAAGSGERLRAGRPKAF-VTL-GGTPLLEHAL-----SGLRASG-VI-DRIVIAVPPALTDESKLVF 65 (223)
T ss_dssp CEEEEEECCCCCGGGTSSSCGGG-SEE-TTEEHHHHHH-----HHHHHHS-CC-SEEEEEECGGGHHHHHHHT
T ss_pred ceEEEEECCccCcccCCCCCCee-eEE-CCeEHHHHHH-----HHHhcCC-CC-CeEEEEEcccHHHHHHHHh
Confidence 47789999999999 54359983 233 4789977654 3443322 11 1467777765444444443
No 32
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*
Probab=91.66 E-value=0.98 Score=44.63 Aligned_cols=128 Identities=5% Similarity=-0.005 Sum_probs=70.7
Q ss_pred ceEEEEEccCCCCCCCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCC
Q 007117 355 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAF 434 (617)
Q Consensus 355 kvavvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FGl 434 (617)
++.+|+||||.|||.+ +|.+ +++ .++++++... +.+.+.+ . -.++|.|.. +.+.+++++ +|.
T Consensus 2 ~~~aiIlA~G~g~R~~--~K~l-~~~-~gkpli~~~l-----~~l~~~~--~-~~ivvv~~~---~~i~~~~~~---~~~ 63 (262)
T 1vic_A 2 SFTVIIPARFASSRLP--GKPL-ADI-KGKPMIQHVF-----EKALQSG--A-SRVIIATDN---ENVADVAKS---FGA 63 (262)
T ss_dssp CCEEEEECCCCCSSST--TGGG-CEE-TTEEHHHHHH-----HHHHHTT--C-SEEEEEESC---HHHHHHHHH---TTC
T ss_pred CcEEEEEcCCCCCCCC--CCcc-ccC-CCeEHHHHHH-----HHHHhCC--C-ceEEEECCc---HHHHHHHHh---cCC
Confidence 4678999999999953 4873 333 5789977654 4444422 2 246676753 567777765 242
Q ss_pred CCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCccccc--
Q 007117 435 DSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAI-- 512 (617)
Q Consensus 435 ~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~~-- 512 (617)
.++. ..+ ..|.|.|.+..+ +..+...+-+++.+.+.|+++..
T Consensus 64 -----~~~~-------~~~------------------~~~~g~~~~~~~------~~~l~~~~~~~vlv~~~D~P~i~~~ 107 (262)
T 1vic_A 64 -----EVCM-------TSV------------------NHNSGTERLAEV------VEKLAIPDNEIIVNIQGDEPLIPPV 107 (262)
T ss_dssp -----EEEE-------CCC------------------SSCCHHHHHHHH------HHHTTCCTTCEEEECCTTCTTCCHH
T ss_pred -----EEEE-------CCc------------------cccCChHHHHHH------HHHhccCCCCEEEEEeCCcCccCHH
Confidence 1111 100 012233322222 22222234578999999998872
Q ss_pred ccHHHHHHHHHcCCcEEEEEeecc
Q 007117 513 GNSMFLGFVKSCGADIGFQISEYA 536 (617)
Q Consensus 513 ~DP~flG~~~~~~~d~~~kvV~k~ 536 (617)
.--.++-.+...+++++.-+++..
T Consensus 108 ~i~~l~~~~~~~~~~~~~~~~~~~ 131 (262)
T 1vic_A 108 IVRQVADNLAKFNVNMASLAVKIH 131 (262)
T ss_dssp HHHHHHHHHHHHTCSEEEEEEECC
T ss_pred HHHHHHHHHHhcCCCEEEEEEecC
Confidence 112345566666778765555443
No 33
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}
Probab=91.57 E-value=1.2 Score=47.12 Aligned_cols=141 Identities=11% Similarity=0.107 Sum_probs=74.8
Q ss_pred ceEEEEEccCCCCCCC----CCCCcccccCCCCc-chHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHC
Q 007117 355 KKAMVLVVHNSEEGNE----CDPHSVVSESTANK-SLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN 429 (617)
Q Consensus 355 kvavvllAGG~GtRg~----~~pK~~~i~l~s~k-slf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~ 429 (617)
++.+|+||||.|||.. ..||.+ +++ .++ ++++... +++.+.+ .. .++|.|+. .++.+.+++.+.
T Consensus 12 ~~~avILAaG~gtRl~plT~~~pK~l-lpi-~gk~pli~~~l-----~~l~~~g--i~-~i~vv~~~-~~~~i~~~~~~~ 80 (420)
T 3brk_X 12 DAMAYVLAGGRGSRLKELTDRRAKPA-VYF-GGKARIIDFAL-----SNALNSG--IR-RIGVATQY-KAHSLIRHLQRG 80 (420)
T ss_dssp GEEEEEEECCCCGGGGGGGSSSCGGG-SEE-TTTEETHHHHH-----HHHHHTT--CC-EEEEEECT-TCHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCccchhhcCCcccc-ccc-CCCCcHHHHHH-----HHHHhCC--CC-eEEEEeCC-ChHHHHHHHhhh
Confidence 4778999999999943 339983 344 466 8877655 4444422 21 45677765 457888888874
Q ss_pred CCCCCCCCcEEEEecCCcccccCCCCccccceecccCCCCccccc---CCCchHHHHHhhCchhHHHHHcCceEEEEEeC
Q 007117 430 DHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAP---VGSGGVFSLLSSHNIIKNLDELGVEYIQICTA 506 (617)
Q Consensus 430 ~~FGl~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P---~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~v 506 (617)
||+... +.+..++.+... .-...| .|.++ +|+. .++.+...+-+++.+.+-
T Consensus 81 --~~~~~~----~~~~~v~i~~~~---------------~~~~~~~~~~Gt~~---al~~--a~~~l~~~~~~~~lv~~~ 134 (420)
T 3brk_X 81 --WDFFRP----ERNESFDILPAS---------------QRVSETQWYEGTAD---AVYQ--NIDIIEPYAPEYMVILAG 134 (420)
T ss_dssp --SCCCCG----GGTCEEEEECCC----------------------CCCCHHH---HHHT--THHHHHHHCCSEEEEEES
T ss_pred --hccccc----cccCCEEEeCcc---------------ccccCCccccCCHH---HHHH--HHHHHHhcCCCEEEEecc
Confidence 565321 000011111100 000012 34433 2222 133444435578888888
Q ss_pred CcccccccHHHHHHHHHcCCcEEEEE
Q 007117 507 NPRNAIGNSMFLGFVKSCGADIGFQI 532 (617)
Q Consensus 507 DN~l~~~DP~flG~~~~~~~d~~~kv 532 (617)
|.+....--.++-++...+++++.-+
T Consensus 135 D~~~~~~l~~l~~~~~~~~~~~tl~~ 160 (420)
T 3brk_X 135 DHIYKMDYEYMLQQHVDSGADVTIGC 160 (420)
T ss_dssp SCEECBCTHHHHHHHHHTTCSEEEEE
T ss_pred cEEEchHHHHHHHHHHHcCCeEEEEE
Confidence 98432222346777888888875443
No 34
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}
Probab=91.55 E-value=0.1 Score=49.80 Aligned_cols=138 Identities=4% Similarity=0.036 Sum_probs=75.4
Q ss_pred ceEEEEEccCCCCCCCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCC
Q 007117 355 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAF 434 (617)
Q Consensus 355 kvavvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FGl 434 (617)
++++|+||||.|||.+. ||.+ +++ .++++++... +++.+ . ..+|.|+.. .+.+.+++ +
T Consensus 2 ~~~~iIlAgG~g~Rmg~-~K~l-~~i-~g~pll~~~l-----~~l~~----~--~ivvv~~~~-~~~~~~~~------~- 59 (197)
T 3d5n_A 2 NIGVIILAAGEGKRFGG-DKLL-AKI-DNTPIIMRTI-----RIYGD----L--EKIIIVGKY-VNEMLPLL------M- 59 (197)
T ss_dssp CEEEEEECSCCTTCCCS-SGGG-SBS-SSSBHHHHHH-----HHTTT----S--BCCEEECTT-HHHHGGGC------T-
T ss_pred ceEEEEECCcCcccCCC-Ceee-CEe-CceEHHHHHH-----HHHHh----C--CEEEEECCC-HHHHHHHh------c-
Confidence 46789999999999433 8873 333 5789877654 33322 1 566777764 23333322 1
Q ss_pred CCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCccccccc
Q 007117 435 DSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIGN 514 (617)
Q Consensus 435 ~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~~~D 514 (617)
..+ + +... . ....+.++++.+|... . +.+++.+...|.++. +
T Consensus 60 --~~~-~--------v~~~--------------~---~~~G~~~si~~al~~~------~--~~~~vlv~~~D~P~i--~ 101 (197)
T 3d5n_A 60 --DQI-V--------IYNP--------------F---WNEGISTSLKLGLRFF------K--DYDAVLVALGDMPFV--T 101 (197)
T ss_dssp --TSC-E--------EECT--------------T---GGGCHHHHHHHHHHHT------T--TSSEEEEEETTCCCS--C
T ss_pred --CCE-E--------EECC--------------C---CCCCHHHHHHHHHHhh------c--cCCcEEEEeCCcccc--C
Confidence 012 1 1111 0 0001125677666542 1 247899999999887 4
Q ss_pred HHHHHHHHH---cCCcEEEEEeeccCCccccccceeeHHHHHHhh
Q 007117 515 SMFLGFVKS---CGADIGFQISEYAKHSEERFNTMLSMNVMKKLT 556 (617)
Q Consensus 515 P~flG~~~~---~~~d~~~kvV~k~~~~~E~~~h~fs~~fl~~~~ 556 (617)
|..+-..+. .++++..-+..-. .... .+|+.+.+..+.
T Consensus 102 ~~~i~~l~~~~~~~~~~~~~~~~g~--~~~P--~~~~~~~l~~l~ 142 (197)
T 3d5n_A 102 KEDVNKIINTFKPNCKAVIPTHKGE--RGNP--VLISKSLFNEIE 142 (197)
T ss_dssp HHHHHHHHHTCCTTCSEEEEEETTE--ECSC--EEEEHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcEEEEEeCCc--ccCC--EEECHHHHHHHH
Confidence 544444443 3556544433111 1112 389988887764
No 35
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6
Probab=90.68 E-value=0.47 Score=48.43 Aligned_cols=69 Identities=7% Similarity=0.115 Sum_probs=43.2
Q ss_pred eEEEEEccCCCCCCC----CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCC
Q 007117 356 KAMVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDH 431 (617)
Q Consensus 356 vavvllAGG~GtRg~----~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~ 431 (617)
+.+|+||||.|||.. ..||.+ +++ .+|++++... +.+...+ .. .++|.|++...+..++++.....
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~l-lpi-~gkpli~~~l-----~~l~~~g--i~-~Iivv~~~~~~~~i~~~l~~g~~ 73 (295)
T 1lvw_A 4 MKGIVLAGGSGTRLYPITRAVSKQL-LPI-YDKPMIYYPL-----SVLMLAG--IR-DILIISTPRDLPLYRDLLGDGSQ 73 (295)
T ss_dssp CEEEEECCCCCSTTTTTTTSSCGGG-SEE-TTEETTHHHH-----HHHHHTT--CC-EEEEEECTTTHHHHHHHHTTSGG
T ss_pred eEEEEECCCCCCccccccCCCCcee-cEE-CCeeHHHHHH-----HHHHHCC--CC-eEEEEeccchHHHHHHHhhhccc
Confidence 457889999999953 238873 233 4688877654 3443322 21 35666665666778888876444
Q ss_pred CCC
Q 007117 432 FAF 434 (617)
Q Consensus 432 FGl 434 (617)
||+
T Consensus 74 ~g~ 76 (295)
T 1lvw_A 74 FGV 76 (295)
T ss_dssp GTS
T ss_pred cCc
Confidence 564
No 36
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}
Probab=90.33 E-value=0.33 Score=45.60 Aligned_cols=128 Identities=5% Similarity=-0.003 Sum_probs=67.4
Q ss_pred EEEEEccCCCCCCCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCCCC
Q 007117 357 AMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDS 436 (617)
Q Consensus 357 avvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FGl~~ 436 (617)
.+|+||||.|||.+..||.+ +++ .++++++... +++.+. +. =.++|.|+.. ++.+.+++.+. ++..
T Consensus 2 ~aiIlA~G~s~R~~~~~K~l-~~~-~g~pli~~~l-----~~l~~~--~~-~~v~vv~~~~-~~~i~~~~~~~--~~~~- 67 (196)
T 3rsb_A 2 DALIMAGGKGTRMGGVEKPL-IKL-CGRCLIDYVV-----SPLLKS--KV-NNIFIATSPN-TPKTKEYINSA--YKDY- 67 (196)
T ss_dssp EEEEEC----CGGGGSCGGG-CEE-TTEEHHHHHH-----HHHHSS--SC-CCEEEECCTT-CHHHHHHHHHH--TTTT-
T ss_pred EEEEECCCCCCcCCCCCccE-EEE-CCEEHHHHHH-----HHHHHC--CC-CEEEEEeCCC-hHHHHHHHHhh--ccCC-
Confidence 46899999999943378873 233 5789877655 444332 11 2577888765 67888888873 2211
Q ss_pred CcEEEEecCCcccccCCCCccccceecccCCCCcccccCCC-chHHHHHhhCchhHHHHHcCceEEEEEeCCccccc--c
Q 007117 437 KKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGS-GGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAI--G 513 (617)
Q Consensus 437 ~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~Gn-Ggv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~~--~ 513 (617)
..+.++. .. ..|. ++++.++... -+++.+.+.|.+++. .
T Consensus 68 ~~~~~~~--------~~--------------------~~g~~~si~~al~~~----------~~~vlv~~~D~P~i~~~~ 109 (196)
T 3rsb_A 68 KNIVVID--------TS--------------------GKGYIEDLNECIGYF----------SEPFLVVSSDLINLKSKI 109 (196)
T ss_dssp TEEEE------------------------------------CCCCCTTTTTC----------SSCEEEEETTEESCCHHH
T ss_pred CCEEEEE--------CC--------------------CCCcHHHHHHHHHhC----------CCCEEEEeCCcccCCHHH
Confidence 1222221 11 0111 1233333321 467899999998872 1
Q ss_pred cHHHHHHHHH-----cCCcEEEEEeecc
Q 007117 514 NSMFLGFVKS-----CGADIGFQISEYA 536 (617)
Q Consensus 514 DP~flG~~~~-----~~~d~~~kvV~k~ 536 (617)
--.++-.+.. .+.+...-+++..
T Consensus 110 i~~l~~~~~~~~~~~~~~~~~~~~~p~~ 137 (196)
T 3rsb_A 110 INSIVDYFYCIKAKTPDVEALAVMIPKE 137 (196)
T ss_dssp HHHHHHHHHHHHTTCC--CEEEEEEETT
T ss_pred HHHHHHHHHhhhcccCCCceEEEEEEcc
Confidence 1224455555 5677777777766
No 37
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6
Probab=90.04 E-value=0.33 Score=49.57 Aligned_cols=69 Identities=7% Similarity=0.113 Sum_probs=43.5
Q ss_pred eEEEEEccCCCCCCC----CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCC
Q 007117 356 KAMVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDH 431 (617)
Q Consensus 356 vavvllAGG~GtRg~----~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~ 431 (617)
+.+|+||||.|||.. ..||.+ +++ .+|++++... +.+...+ .. .++|.|++...+..++++.....
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~l-lpi-~gkpli~~~l-----~~l~~~g--i~-~I~vv~~~~~~~~i~~~l~~g~~ 73 (296)
T 1mc3_A 4 MKGIILAGGSGTRLHPITRGVSKQL-LPI-YDKPMIYYPL-----SVLMLAG--IR-EILIITTPEDKGYFQRLLGDGSE 73 (296)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGGG-SEE-TTEETTHHHH-----HHHHHTT--CC-EEEEEECTTTHHHHHHHHTTSGG
T ss_pred cEEEEECCCCCCcCCcccCCCCcee-eEE-CCeeHHHHHH-----HHHHhCC--CC-cEEEEechhHHHHHHHHHhcccc
Confidence 457889999999953 348973 233 4688877654 3443322 11 35666666666778888876444
Q ss_pred CCC
Q 007117 432 FAF 434 (617)
Q Consensus 432 FGl 434 (617)
||+
T Consensus 74 ~g~ 76 (296)
T 1mc3_A 74 FGI 76 (296)
T ss_dssp GTC
T ss_pred cCc
Confidence 564
No 38
>3htr_A Uncharacterized PRC-barrel domain protein; beta-barrel, photo-reaction-center domain, structural genomics, PSI-2; HET: MSE; 2.06A {Rhodopseudomonas palustris}
Probab=89.84 E-value=1.1 Score=39.84 Aligned_cols=72 Identities=14% Similarity=0.074 Sum_probs=49.1
Q ss_pred cccHhhccCcEEEEccCCeEeEEEEEec-c--CCCceEEEEEeccccccccCcccccccCCCCCCcEEEEecccCcccee
Q 007117 125 EFYTRDLVGMRVVMKETGELVGTVVNVF-N--SGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 201 (617)
Q Consensus 125 EfY~~DLIG~~V~d~~~g~~lG~V~dV~-~--~ga~dllvV~~~~~~~~~~~~~~~~~~~~~~~gke~LIPfv~~~V~~I 201 (617)
-+=..+|+|.+|++ .+|+.||+|.||+ + +|.-.-++|.... .-| ..++.++||+-.- .+
T Consensus 14 l~~~~~l~G~~V~~-~dG~~iG~V~dv~iD~~~G~i~~~vv~~Gg------flG--------~g~~~v~ip~~~l---~~ 75 (120)
T 3htr_A 14 LIGSDKVQGTAVYG-PDGEKIGSIERVMIEKVSGRVSYAVLSFGG------FLG--------IGDDHYPLPWPAL---KY 75 (120)
T ss_dssp EEEHHHHTTCEEEC-TTSCEEEEEEEEEEETTTCBEEEEEEEESS------BTT--------BSCEEEEECGGGC---EE
T ss_pred eEehhhccCCEEEc-CCCCEEEEEEEEEEECCCCcEEEEEEECCC------ccC--------cCCEEEEeCHHHe---EE
Confidence 35578999999996 5898999999987 3 4444456775421 001 1246899999852 48
Q ss_pred ecCCCEEEEeCCC
Q 007117 202 DMNGREMQITPPK 214 (617)
Q Consensus 202 Dle~~~I~V~~pe 214 (617)
|.+++.+++.+..
T Consensus 76 ~~~~~~~~v~~tk 88 (120)
T 3htr_A 76 NVELGGYQVMVTV 88 (120)
T ss_dssp ETTTTEEECCCCH
T ss_pred ecCCCEEEeCCCH
Confidence 8888887765543
No 39
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A
Probab=89.23 E-value=0.41 Score=46.04 Aligned_cols=64 Identities=14% Similarity=0.096 Sum_probs=32.8
Q ss_pred CceEEEEEccCCCCC-CCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 007117 354 GKKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 428 (617)
Q Consensus 354 gkvavvllAGG~GtR-g~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~ 428 (617)
.++.+|+||||.||| |...||.+ +++ .++++++... +++.+.+ .. =.++|.|+... +.+.+ +.+
T Consensus 5 ~~~~aiIlA~G~g~R~~~~~~K~l-~~~-~gkpli~~~l-----~~l~~~~-~~-~~ivvv~~~~~-~~~~~-~~~ 69 (231)
T 1vgw_A 5 RKNIALIPAAGIGVRFGADKPKQY-VEI-GSKTVLEHVL-----GIFERHE-AV-DLTVVVVSPED-TFADK-VQT 69 (231)
T ss_dssp CCEEEEEECC----------CCSC-CEE-TTEEHHHHHH-----HHHHTCT-TC-CEEEEECCTTC-STHHH-HHH
T ss_pred CceEEEEEcccccccCCCCCCceE-eEE-CCeEHHHHHH-----HHHHcCC-CC-CeEEEEECccH-HHHHH-HHh
Confidence 468899999999999 44348983 333 4899977654 4443311 11 25677776543 34455 443
No 40
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Probab=89.01 E-value=0.59 Score=45.75 Aligned_cols=143 Identities=12% Similarity=0.151 Sum_probs=72.8
Q ss_pred eEEEEEccCCCCCCC----CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCC
Q 007117 356 KAMVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDH 431 (617)
Q Consensus 356 vavvllAGG~GtRg~----~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~ 431 (617)
+.+|+||||.|||.. ..||.+ +++ .++++++... +++.+.+ . -.++|.|+.. ++.+++++.+...
T Consensus 3 ~~avIlAaG~gtRl~~lt~~~pK~l-~~i-~gkpli~~~l-----~~l~~~g--~-~~i~vv~~~~-~~~i~~~~~~~~~ 71 (259)
T 1tzf_A 3 SKAVILAGGLGTRLSEETIVKPKPM-VEI-GGKPILWHIM-----KMYSVHG--I-KDFIICCGYK-GYVIKEYFANYFL 71 (259)
T ss_dssp CEEEEEECSCC--------CCCGGG-CEE-TTEEHHHHHH-----HHHHHTT--C-CEEEEEECTT-HHHHHHHHHTHHH
T ss_pred cEEEEECCCCcccCCCccCCCCccc-cEE-CCEEHHHHHH-----HHHHHCC--C-CEEEEEcccC-HHHHHHHHhhccc
Confidence 467889999999943 238983 333 4888877654 4444422 2 2567778754 4788888875321
Q ss_pred CCCCCCcEEEEecCCcccccCCCCccccceecc--cCCCCcc----cccCCCchHHHHHhhCchhHHHHHcCceEEEEEe
Q 007117 432 FAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILM--KSPWETL----QAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICT 505 (617)
Q Consensus 432 FGl~~~~v~~f~Q~~lP~~~~~~~g~~~gkill--~~~~~i~----~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~ 505 (617)
++ .++.+..|+. -+ .++- ..++.+. -.+.|.|+...+... .++ +-+++.+.+
T Consensus 72 ~~---~~~~~~~~~~--~~----------~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~--~~~-----~~~~~lv~~ 129 (259)
T 1tzf_A 72 HM---SDVTFHMAEN--RM----------EVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAE--YVK-----DDEAFLFTY 129 (259)
T ss_dssp HH---SCEEEEGGGT--EE----------EETTCCCCCCEEEEEECCSSCCHHHHHHHTGG--GTT-----TSSCEEEEE
T ss_pred cc---cccccccccc--ce----------eeeeccccccceeeeecccccCcHHHHHHHHH--hcC-----CCCcEEEEE
Confidence 11 1234333332 00 0100 0122221 125676665443222 121 236777888
Q ss_pred CCcccccccHHHHHHHHHcCCcEEEE
Q 007117 506 ANPRNAIGNSMFLGFVKSCGADIGFQ 531 (617)
Q Consensus 506 vDN~l~~~DP~flG~~~~~~~d~~~k 531 (617)
-|++....--.++-++...+++++..
T Consensus 130 ~D~~~~~~~~~~~~~~~~~~~~~t~~ 155 (259)
T 1tzf_A 130 GDGVADLDIKATIDFHKAHGKKATLT 155 (259)
T ss_dssp TTEEECCCHHHHHHHHHHHCCSEEEE
T ss_pred CCEecccCHHHHHHHHHHhCCeEEEE
Confidence 88853321124567777778776543
No 41
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*
Probab=88.94 E-value=0.65 Score=44.62 Aligned_cols=64 Identities=11% Similarity=0.054 Sum_probs=35.1
Q ss_pred eEEEEEccCCCCC-CC-CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 007117 356 KAMVLVVHNSEEG-NE-CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 428 (617)
Q Consensus 356 vavvllAGG~GtR-g~-~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~ 428 (617)
+.+|+||||.||| |. ..||.+ +++ .++++++... +++.+.+ .. =.++|.|+....+.+.+++++
T Consensus 3 ~~~iIlA~G~g~R~~~~~~~K~l-~~i-~g~pli~~~l-----~~l~~~~-~~-~~i~vv~~~~~~~~~~~~~~~ 68 (236)
T 2vsh_A 3 IYAGILAGGTGTRMGISNLPKQF-LEL-GDRPILIHTI-----EKFVLEP-SI-EKIVVGVHGDWVSHAEDLVDK 68 (236)
T ss_dssp EEEEEEEC-----------CGGG-SEE-TTEEHHHHHH-----HHHHTCT-TC-CCEEEEECGGGHHHHHHHHHH
T ss_pred eEEEEeCCccccccCCCCCCCee-eee-CCccHHHHHH-----HHHHcCC-CC-CeEEEEeCHHHHHHHHHHHHh
Confidence 5678999999999 44 238983 333 4789877654 4443311 11 256777877665677787765
No 42
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*
Probab=88.56 E-value=2.5 Score=45.12 Aligned_cols=143 Identities=10% Similarity=0.058 Sum_probs=66.7
Q ss_pred eEEEEEccCCCCCCC---C-CCCcccccCCCCc-chHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCC
Q 007117 356 KAMVLVVHNSEEGNE---C-DPHSVVSESTANK-SLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDND 430 (617)
Q Consensus 356 vavvllAGG~GtRg~---~-~pK~~~i~l~s~k-slf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~ 430 (617)
+.+|+||||.|||.. . .||.+ +++ .++ ++++... +++.+.+ .. .++|.|+. .++.+.++|.+.
T Consensus 21 ~~avILAaG~gtRl~plT~~~pK~l-lpi-~g~~pli~~~l-----~~l~~~g--~~-~i~vv~~~-~~~~i~~~~~~~- 88 (451)
T 1yp2_A 21 VLGIILGGGAGTRLYPLTKKRAKPA-VPL-GANYRLIDIPV-----SNCLNSN--IS-KIYVLTQF-NSASLNRHLSRA- 88 (451)
T ss_dssp EEEEEC------CCTTTTTTSCGGG-CEE-TTTEETTHHHH-----HHHHHTT--CC-EEEEEESC-CCHHHHHHHHHH-
T ss_pred eEEEEECCCCCCcccchhcCCccee-eEE-CCcceeHHHHH-----HHHHHCC--CC-EEEEEecc-CHHHHHHHHhhh-
Confidence 678999999999943 2 39983 344 366 8877655 4444422 11 46677765 456788888752
Q ss_pred CCCCCCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCCCchHHHHHhhCchhHHHHHcCceEEEEEeCCccc
Q 007117 431 HFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRN 510 (617)
Q Consensus 431 ~FGl~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~GnGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l 510 (617)
+|.+-. .++.++.+.++... . .+. -.-.+.|.|+-. +. .++.+...+-+++.+.+-|++.
T Consensus 89 -~~~~~~--~~~~~~~v~i~~~~-~----------~~~-~~~~~~Gt~~al---~~--a~~~~~~~~~~~~lv~~~D~~~ 148 (451)
T 1yp2_A 89 -YASNMG--GYKNEGFVEVLAAQ-Q----------SPE-NPDWFQGTADAV---RQ--YLWLFEEHTVLEYLILAGDHLY 148 (451)
T ss_dssp -CC----------CCEEEEEESC-S----------STT-SCCCCCSHHHHH---HH--THHHHTTSCCSEEEEECSCEEC
T ss_pred -hhcccc--cccccCcEEEeccc-c----------ccc-ccccccCcHHHH---HH--HHHHHHhcCCCeEEEecCcEEE
Confidence 221000 01111112222111 0 000 001123544322 22 1233333346789999999943
Q ss_pred ccccHHHHHHHHHcCCcEEE
Q 007117 511 AIGNSMFLGFVKSCGADIGF 530 (617)
Q Consensus 511 ~~~DP~flG~~~~~~~d~~~ 530 (617)
...-..++-++...+++++.
T Consensus 149 ~~~l~~l~~~~~~~~~~~tl 168 (451)
T 1yp2_A 149 RMDYEKFIQAHRETDADITV 168 (451)
T ss_dssp CCCHHHHHHHHHHTTCSEEE
T ss_pred cCCHHHHHHHHHHcCCcEEE
Confidence 22113467788888888754
No 43
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A
Probab=88.11 E-value=0.7 Score=43.05 Aligned_cols=143 Identities=10% Similarity=-0.027 Sum_probs=76.3
Q ss_pred ceEEEEEccCCCCCCCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCC
Q 007117 355 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAF 434 (617)
Q Consensus 355 kvavvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~~~FGl 434 (617)
++.+|+||||.|||.+ .||.+ +++ .++++++... +++.+.+ + =.++|.|+.. .+...+++.. +|+
T Consensus 5 ~~~~iIlA~G~~~R~g-~~K~l-~~~-~g~pll~~~l-----~~l~~~~--~-~~i~vv~~~~-~~~~~~~~~~---~~~ 69 (197)
T 2wee_A 5 QITGVVLAAGRSNRLG-TPKQL-LPY-RDTTVLGATL-----DVARQAG--F-DQLILTLGGA-ASAVRAAMAL---DGT 69 (197)
T ss_dssp EEEEEEEECCCCTTTS-SCGGG-SEE-TTEEHHHHHH-----HHHHHTT--C-SEEEEEECTT-HHHHHHHSCC---TTS
T ss_pred ceEEEEECCCCcccCC-CCeEc-Cee-CCccHHHHHH-----HHHHhcC--C-CcEEEEeCCC-HHHHHHHhcc---CCC
Confidence 5788999999999953 68873 333 5789877654 4444322 1 1566777654 3445544432 222
Q ss_pred CCCcEEEEecCCcccccCCCCccccceecccCCCCcccccCC-CchHHHHHhhCchhHHHHHcCceEEEEEeCCcccccc
Q 007117 435 DSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVG-SGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIG 513 (617)
Q Consensus 435 ~~~~v~~f~Q~~lP~~~~~~~g~~~gkill~~~~~i~~~P~G-nGgv~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~l~~~ 513 (617)
.+ +... .+ +.| .++++.++..- ..+-+++.+...|.++.
T Consensus 70 -----~~--------~~~~-------------~~-----~~g~~~~i~~al~~~-------~~~~~~vlv~~~D~P~~-- 109 (197)
T 2wee_A 70 -----DV--------VVVE-------------DV-----ERGCAASLRVALARV-------HPRATGIVLMLGDQPQV-- 109 (197)
T ss_dssp -----EE--------EECC----------------------CCHHHHHHHHTTS-------CTTEEEEEEEETTCTTC--
T ss_pred -----EE--------EECC-------------Cc-----ccCHHHHHHHHHHHh-------cccCCeEEEEeCCcCCC--
Confidence 11 1111 00 113 24566666442 12568999999999887
Q ss_pred cHHHHHHHH--HcCCcEEEEEeeccCCccccccceeeHHHHHHhh
Q 007117 514 NSMFLGFVK--SCGADIGFQISEYAKHSEERFNTMLSMNVMKKLT 556 (617)
Q Consensus 514 DP~flG~~~--~~~~d~~~kvV~k~~~~~E~~~h~fs~~fl~~~~ 556 (617)
+|..+-... ..++++..-+..-. +... .+|+.+.+..+.
T Consensus 110 ~~~~i~~l~~~~~~~~i~~~~~~g~--~~~P--~~~~~~~l~~l~ 150 (197)
T 2wee_A 110 APATLRRIIDVGPATEIMVCRYADG--VGHP--FWFSRTVFGELA 150 (197)
T ss_dssp CHHHHHHHHHHGGGSSEEEEEETTE--EEEE--EEEEGGGHHHHH
T ss_pred CHHHHHHHHhhcCCCCEEEEecCCC--cCCC--EEECHHHHHHHH
Confidence 333333333 34555543222100 1111 278887777664
No 44
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*
Probab=88.08 E-value=0.57 Score=46.80 Aligned_cols=63 Identities=13% Similarity=0.086 Sum_probs=40.2
Q ss_pred eEEEEEccCCCCCCC----CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHC
Q 007117 356 KAMVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN 429 (617)
Q Consensus 356 vavvllAGG~GtRg~----~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~~ 429 (617)
..+|+||||.|||.. ..||.+ +++ .++++++... +++.+.+ . -.++|.|+ ...+.+.++|...
T Consensus 3 ~~avIlAaG~gtRl~plt~~~pK~l-l~i-~gkpli~~~l-----~~l~~~g--i-~~i~vv~~-~~~~~i~~~~~~~ 69 (281)
T 3juk_A 3 KKCLFPAAGYGTRFLPITKTIPKEM-LPI-VDKPLIQYAV-----EEAMEAG--C-EVMAIVTG-RNKRSLEDYFDTS 69 (281)
T ss_dssp CEEEEECCSCCGGGTTGGGTSCGGG-CBS-SSSBHHHHHH-----HHHHHHT--C-CEEEEEEC-TTHHHHHHHTSCC
T ss_pred eEEEEECCcCCcccCccccCCCccc-ceE-CCEEHHHHHH-----HHHHhCC--C-CEEEEEec-CCHHHHHHHHhcc
Confidence 457899999999943 349983 344 4779977755 4444422 1 14566666 4457888888653
No 45
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*
Probab=88.01 E-value=0.61 Score=44.79 Aligned_cols=55 Identities=13% Similarity=0.181 Sum_probs=30.9
Q ss_pred ceEEEEEccCCCCC-CCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccc
Q 007117 355 KKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALE 418 (617)
Q Consensus 355 kvavvllAGG~GtR-g~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t 418 (617)
++.+|+||||.||| |...||.+ +++ .++++++... +.+.+. ... =.++|.|+...
T Consensus 4 ~~~aiIlAaG~g~R~~~~~~K~l-~~i-~g~pli~~~l-----~~l~~~-~~~-~~ivvv~~~~~ 59 (228)
T 2yc3_A 4 SVSVILLAGGQGKRMKMSMPKQY-IPL-LGQPIALYSF-----FTFSRM-PEV-KEIVVVCDPFF 59 (228)
T ss_dssp CEEEEEECCCCC-------CGGG-SEE-TTEEHHHHHH-----HHHHHC-TTE-EEEEEECCGGG
T ss_pred ceEEEEECCccccccCCCCCccE-eEE-CCEEHHHHHH-----HHHHcC-CCC-CeEEEEEChHH
Confidence 57889999999999 53349983 233 5788877654 444331 111 14677776543
No 46
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13
Probab=87.47 E-value=0.48 Score=45.74 Aligned_cols=55 Identities=20% Similarity=0.158 Sum_probs=34.9
Q ss_pred ceEEEEEccCCCCC-CCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccc
Q 007117 355 KKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALE 418 (617)
Q Consensus 355 kvavvllAGG~GtR-g~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t 418 (617)
-..+|+||||.||| |...||.+ +++ .++++++... +.+.+.+ .. =.++|.|+...
T Consensus 13 ~~~aiILAaG~s~Rm~~~~~K~l-~~i-~Gkpli~~~i-----~~l~~~~-~~-~~ivVv~~~~~ 68 (234)
T 1vpa_A 13 MNVAILLAAGKGERMSENVPKQF-LEI-EGRMLFEYPL-----STFLKSE-AI-DGVVIVTRREW 68 (234)
T ss_dssp CEEEEEEECCCCGGGCCSSCGGG-CEE-TTEETTHHHH-----HHHHHCT-TC-SEEEEEECGGG
T ss_pred cCeEEEEcCcchhhcCCCCCceE-EEE-CCeEHHHHHH-----HHHHcCC-CC-CeEEEEEChHH
Confidence 47789999999999 54448973 233 5889977655 4443311 12 25677776543
No 47
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*
Probab=86.69 E-value=0.49 Score=49.21 Aligned_cols=64 Identities=16% Similarity=0.089 Sum_probs=39.1
Q ss_pred EEEEEccCCCCCCC-----CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 007117 357 AMVLVVHNSEEGNE-----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 428 (617)
Q Consensus 357 avvllAGG~GtRg~-----~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~ 428 (617)
..|+||||.|||+. ..||.+ +++...++++|... +++... .+. =..+|.|+......+.+++.+
T Consensus 3 ~~VILAgG~GtRl~Pls~~~~pK~l-l~l~g~~pli~~~l-----~~l~~~-~~~-~~iivvt~~~~~~~i~~~l~~ 71 (336)
T 2x65_A 3 KALILAGGSGERFWPLSTPETPKQF-LKLFGNKSLMRWTF-----ERVLEE-MDP-KDVIVVTHKDYVERTKKELPE 71 (336)
T ss_dssp EEEEECCCBCGGGTTTSCTTCBGGG-CCCBTTBCHHHHHH-----HHHHTT-CCG-GGEEEEEEGGGHHHHHHHCTT
T ss_pred EEEEECCCCCccCCCCcCCCCCceE-EECCCCCcHHHHHH-----HHHhcc-CCC-CcEEEEcChHHHHHHHHHhhc
Confidence 46889999999942 249973 34534499988755 454432 112 145677766545556666543
No 48
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Probab=86.61 E-value=0.68 Score=49.39 Aligned_cols=63 Identities=17% Similarity=0.150 Sum_probs=41.2
Q ss_pred ceEEEEEccCCCCC-CCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 007117 355 KKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 428 (617)
Q Consensus 355 kvavvllAGG~GtR-g~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~ 428 (617)
++.+|+||||.||| +...||.+ +++ .++++++... +.+.+.+ . -.++|.|+.. ++.+++++.+
T Consensus 8 ~~~aiIlA~G~g~Rl~~~~pK~l-~~i-~g~pli~~~l-----~~l~~~~--~-~~i~vv~~~~-~~~i~~~~~~ 71 (459)
T 4fce_A 8 SMSVVILAAGKGTRMYSDLPKVL-HPL-AGKPMVQHVI-----DAAMKLG--A-QHVHLVYGHG-GELLKKTLAD 71 (459)
T ss_dssp CEEEEEEECCCCGGGCCSSCGGG-SEE-TTEEHHHHHH-----HHHHHHT--C-SCEEEEESSC-HHHHHHHC--
T ss_pred cceEEEECCCCCccCCCCCCccc-Cee-CCeeHHHHHH-----HHHHhCC--C-CcEEEEeCCC-HHHHHHHhcc
Confidence 68999999999999 54459983 333 5789977655 4443322 1 2467777655 5677777653
No 49
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=86.31 E-value=0.44 Score=46.62 Aligned_cols=34 Identities=6% Similarity=0.109 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCCC-CCCCCCcccccCCCCcchHHHHH
Q 007117 355 KKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQT 391 (617)
Q Consensus 355 kvavvllAGG~GtR-g~~~pK~~~i~l~s~kslf~l~~ 391 (617)
++++|+||||.||| |.. ||.+ +++ .++++++...
T Consensus 25 ~~~aiILAgG~s~Rm~~~-~K~l-~~i-~gkpli~~~l 59 (236)
T 2px7_A 25 EVSVLIPAAGNGLRLGRG-PKAF-LQV-GGRTLLEWTL 59 (236)
T ss_dssp CCEEEEECCC-------C-CGGG-CBC-SSSBHHHHHH
T ss_pred ceEEEEEcCCCCccCCCC-CCeE-EEE-CCEEHHHHHH
Confidence 57889999999999 544 8983 334 5889877644
No 50
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*
Probab=86.16 E-value=1.5 Score=42.21 Aligned_cols=60 Identities=10% Similarity=0.030 Sum_probs=32.3
Q ss_pred ceEEEEEccCCCCCCCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHH
Q 007117 355 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 427 (617)
Q Consensus 355 kvavvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~ 427 (617)
++.+|+||||.|||.+..||.+ +++ .++++++... +++.+. + -.++|.| ..++...+++.
T Consensus 18 ~~~~iIlA~G~g~R~~~~~K~l-~~i-~g~pli~~~l-----~~l~~~---~-~~i~vv~--~~~~~~~~~~~ 77 (232)
T 2xme_A 18 LMKAVILAAGLGTRLGGVPKPL-VRV-GGCEIILRTM-----KLLSPH---V-SEFIIVA--SRYADDIDAFL 77 (232)
T ss_dssp CEEEEEEECC------CCCGGG-CEE-TTEEHHHHHH-----HHHGGG---E-EEEEEEE--STTHHHHHHHH
T ss_pred cceEEEECCcCcCcCCCCCcEE-eEE-CCEEHHHHHH-----HHHHHh---C-CEEEEEe--CChHHHHHHHH
Confidence 4788999999999953338983 233 4788877654 344331 1 2456666 34555656553
No 51
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A
Probab=86.16 E-value=0.53 Score=45.64 Aligned_cols=53 Identities=8% Similarity=0.056 Sum_probs=33.7
Q ss_pred ceEEEEEccCCCCC-CCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCc
Q 007117 355 KKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPA 416 (617)
Q Consensus 355 kvavvllAGG~GtR-g~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~ 416 (617)
++.+|+||||.||| |...||.+ +++ .++++++... +++.+. ..--.++|.|+.
T Consensus 7 ~~~~iIlA~G~g~R~~~~~~K~l-~~i-~g~pll~~~i-----~~l~~~--~~~~~ivvv~~~ 60 (236)
T 1i52_A 7 DVCAVVPAAGFGRRMQTECPKQY-LSI-GNQTILEHSV-----HALLAH--PRVKRVVIAISP 60 (236)
T ss_dssp CEEEEEEECCCCGGGCCSSCGGG-SEE-TTEEHHHHHH-----HHHHTS--TTEEEEEEEECT
T ss_pred ceeEEEECCcCccccCCCCCcce-eeE-CCEEHHHHHH-----HHHHhC--CCCCeEEEEeCc
Confidence 57889999999999 54459983 233 5899977654 444321 111256666654
No 52
>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20
Probab=84.01 E-value=0.67 Score=48.22 Aligned_cols=54 Identities=11% Similarity=0.034 Sum_probs=33.5
Q ss_pred eEEEEEccCCCCCCC-----CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCcc
Q 007117 356 KAMVLVVHNSEEGNE-----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPAL 417 (617)
Q Consensus 356 vavvllAGG~GtRg~-----~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~ 417 (617)
+..|+||||.|||+. ..||.+ +++..+++++|... +++.... +.. .++|.|+..
T Consensus 3 m~~VILAgG~GtRl~Pls~~~~pK~l-l~l~G~~pli~~~l-----~~l~~~~-~~~-~iiVvt~~~ 61 (337)
T 2cu2_A 3 TYALVMAGGRGERLWPLSREDRPKPF-LPLFEGKTLLEATL-----ERLAPLV-PPE-RTLLAVRRD 61 (337)
T ss_dssp EEEEEECCCCCGGGTTTCBTTBCGGG-CBCGGGCBHHHHHH-----HHHTTTS-CGG-GEEEEEEGG
T ss_pred eEEEEEcCCCcccCCccCCCCCCceE-EEcCCCChHHHHHH-----HHHhCcC-CCC-CEEEEcChH
Confidence 568999999999952 349983 34433489988755 4443320 122 456666654
No 53
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*
Probab=82.60 E-value=1.2 Score=42.51 Aligned_cols=52 Identities=10% Similarity=-0.022 Sum_probs=33.7
Q ss_pred ceEEEEEccCCCCCCCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCcc
Q 007117 355 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPAL 417 (617)
Q Consensus 355 kvavvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~ 417 (617)
++.+|+||||.|+|.+..||.+ +++ .++++++... +.+.. . + -.++|.|+..
T Consensus 6 ~~~~iILAgG~s~Rmg~~~K~l-l~i-~G~pli~~~l-----~~l~~-~--~-~~ivvv~~~~ 57 (201)
T 1e5k_A 6 TITGVVLAGGKARRMGGVDKGL-LEL-NGKPLWQHVA-----DALMT-Q--L-SHVVVNANRH 57 (201)
T ss_dssp SEEEEEECCCCCSSSCSSCGGG-SEE-TTEEHHHHHH-----HHHHH-H--C-SCEEEECSSS
T ss_pred cceEEEEcCCCCCcCCCCCCce-eeE-CceeHHHHHH-----HHHHh-h--C-CEEEEEcCCc
Confidence 5889999999999954468873 233 5789877654 33322 1 1 2567777654
No 54
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*
Probab=81.40 E-value=5 Score=42.80 Aligned_cols=60 Identities=12% Similarity=0.096 Sum_probs=35.8
Q ss_pred eEEEEEccCCCCCCC-CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHH
Q 007117 356 KAMVLVVHNSEEGNE-CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLF 426 (617)
Q Consensus 356 vavvllAGG~GtRg~-~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff 426 (617)
--+|+||||.|||.. ..||.+ +++ .++++++... +.+.+. +. -.++|.|+.. .+...+++
T Consensus 12 ~~~vIlAaG~g~R~~~~~pK~l-~~i-~gkpli~~~l-----~~l~~~--g~-~~iivv~~~~-~~~i~~~~ 72 (468)
T 1hm9_A 12 NFAIILAAGKGTRMKSDLPKVL-HKV-AGISMLEHVF-----RSVGAI--QP-EKTVTVVGHK-AELVEEVL 72 (468)
T ss_dssp EEEEEECCCCCGGGCCSSCGGG-SEE-TTEEHHHHHH-----HHHHTT--CC-SEEEEEECTT-HHHHHHSS
T ss_pred CcEEEEcCCCCccCCCCCCcEe-eEE-CCccHHHHHH-----HHHHhc--CC-CCEEEEECCC-HHHHHHHh
Confidence 346889999999944 448983 333 5789877655 444432 11 2456666654 34444443
No 55
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Probab=80.47 E-value=1.3 Score=47.13 Aligned_cols=62 Identities=8% Similarity=0.021 Sum_probs=39.7
Q ss_pred ceEEEEEccCCCCCCC-CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHH
Q 007117 355 KKAMVLVVHNSEEGNE-CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 427 (617)
Q Consensus 355 kvavvllAGG~GtRg~-~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~ 427 (617)
++.+|+||||.|||.. ..||.+ +++ .++++++... +++.+.+ . -.++|.|+.. .+.+.+++.
T Consensus 5 ~~~aiIlA~G~g~Rl~~~~pK~l-~~i-~gkpli~~~l-----~~l~~~~--~-~~iivv~~~~-~~~i~~~~~ 67 (456)
T 2v0h_A 5 ALSAVILAAGKGTRMYSDLPKVL-HTI-AGKPMVKHVI-----DTAHQLG--S-ENIHLIYGHG-GDLMRTHLA 67 (456)
T ss_dssp CEEEEEECCCCCGGGCSSSCGGG-SEE-TTEEHHHHHH-----HHHHHTT--C-SCEEEEECTT-HHHHHHHTT
T ss_pred cceEEEECCCCCcccCCCCCccc-cEE-CCccHHHHHH-----HHHHhCC--C-CcEEEEeCCC-HHHHHHHhh
Confidence 6788999999999944 459983 333 5789977655 4444422 1 1456777653 455666654
No 56
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}
Probab=80.23 E-value=0.75 Score=45.73 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=22.9
Q ss_pred EEEEccCCCCCC---CCC-CCcccccCCCCcchHHHHH
Q 007117 358 MVLVVHNSEEGN---ECD-PHSVVSESTANKSLALLQT 391 (617)
Q Consensus 358 vvllAGG~GtRg---~~~-pK~~~i~l~s~kslf~l~~ 391 (617)
+|+||||.|||. ... ||.+ +++ .+|++++...
T Consensus 2 ~iIlAaG~GtRl~plt~~~PK~l-lpv-~gkpli~~~l 37 (255)
T 4evw_A 2 IVIPMAGMSSRFFKAGYTQPKYM-LEA-HGQTLFEHSV 37 (255)
T ss_dssp EEEECCSCCHHHHHTTCCSCGGG-CEE-TTEEHHHHHH
T ss_pred EEEEcCCCCcccccCCCCCCccc-cEE-CCeEHHHHHH
Confidence 689999999993 223 9983 334 5789977654
No 57
>1pm3_A MTH1895; unknown function, structural genomics, PSI, protein structure initiative; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.41.1.2
Probab=79.41 E-value=3.1 Score=35.42 Aligned_cols=38 Identities=24% Similarity=0.332 Sum_probs=27.9
Q ss_pred cccH-hhccCcEEEEccCCeEeEEEEEec---cCCCceEEEEE
Q 007117 125 EFYT-RDLVGMRVVMKETGELVGTVVNVF---NSGANDLLHVM 163 (617)
Q Consensus 125 EfY~-~DLIG~~V~d~~~g~~lG~V~dV~---~~ga~dllvV~ 163 (617)
.... .+|.|.+|++ .+|+.||+|.|+. ++|.=.-++|.
T Consensus 20 ~Mr~~seL~Gk~Vin-~dG~~LG~V~Dv~iD~~~G~I~~lvl~ 61 (97)
T 1pm3_A 20 HMRIVEEMVGKEVLD-SSAKVIGKVKDVEVDIESQAIESLVLG 61 (97)
T ss_dssp CEETTTTSSSCEEEC-TTSCEEEEEEEEEEETTTTEEEEEEEE
T ss_pred EEEeehhCCCCEeEC-CCCCEEeEEEEEEEECCCCEEEEEEEc
Confidence 3445 7999999997 7899999999985 34443444553
No 58
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Probab=77.93 E-value=1.3 Score=43.68 Aligned_cols=61 Identities=10% Similarity=0.161 Sum_probs=37.2
Q ss_pred ceEEEEEccCCCCCCC----CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHH
Q 007117 355 KKAMVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLF 426 (617)
Q Consensus 355 kvavvllAGG~GtRg~----~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff 426 (617)
++.+|+||||.|||.. ..||.+ +++ .++++++... +++.+.+ .. .++|.|... .+....+.
T Consensus 25 ~~~aiIlAaG~gtRl~plt~~~pK~l-~~i-~gkpli~~~l-----~~l~~~g--~~-~i~vv~~~~-~~~i~~~~ 89 (254)
T 1jyk_A 25 RVKAIILAAGLGTRLRPLTENTPKAL-VQV-NQKPLIEYQI-----EFLKEKG--IN-DIIIIVGYL-KEQFDYLK 89 (254)
T ss_dssp CCEEEEEECSCCGGGTTTTSSSCGGG-CEE-TTEEHHHHHH-----HHHHHTT--CC-CEEEEECTT-GGGGTHHH
T ss_pred CceEEEECCCCcccCCcccCCCCCEE-eeE-CCEEHHHHHH-----HHHHHCC--CC-eEEEEeCCc-HHHHHHHH
Confidence 5778999999999943 349983 344 5889977755 4444422 21 456666643 23344444
No 59
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}
Probab=77.81 E-value=2.2 Score=42.89 Aligned_cols=63 Identities=14% Similarity=0.082 Sum_probs=39.9
Q ss_pred ceEEEEEccCCCCCCC----CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 007117 355 KKAMVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 428 (617)
Q Consensus 355 kvavvllAGG~GtRg~----~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~ 428 (617)
.+.+|+||||.|||.. ..||.+ +++ .++++++... +++.+.+ .. .++|.|+.. .+.++++|..
T Consensus 14 ~~~avIlAaG~gtRl~plt~~~pK~l-l~i-~gkpli~~~l-----~~l~~~g--~~-~i~vv~~~~-~~~i~~~~~~ 80 (297)
T 2ux8_A 14 LRKAVFPVAGLGTRFLPATKAMPKEM-LPV-VDRPLIQYAV-----DEAVEAG--IE-QMIFVTGRG-KSALEDHFDI 80 (297)
T ss_dssp CCEEEEEECCCCGGGTTTTSSSCGGG-CEE-TTEEHHHHHH-----HHHHHTT--CC-EEEEEECTT-CHHHHHHTSC
T ss_pred ccEEEEECCCCccccCccccCCCcee-eeE-CCeEHHHHHH-----HHHHhCC--CC-EEEEEeCCC-HHHHHHHHhh
Confidence 4677899999999943 338973 333 4789977655 4444422 21 456666653 6777777653
No 60
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*
Probab=76.97 E-value=2.5 Score=44.61 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=33.5
Q ss_pred ceEEEEEccCCCCC-CCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCC
Q 007117 355 KKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLP 415 (617)
Q Consensus 355 kvavvllAGG~GtR-g~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS 415 (617)
++++|+||||.||| |...||.+ +++ .++++++... +++.+. ... =.++|.|+
T Consensus 3 ki~aIILAaG~ssRmg~~~pK~l-l~l-~GkPLi~~~l-----~~l~~~-~~~-~~IvVvt~ 55 (371)
T 1w55_A 3 EMSLIMLAAGNSTRFNTKVKKQF-LRL-GNDPLWLYAT-----KNLSSF-YPF-KKIVVTSS 55 (371)
T ss_dssp CEEEEEECCSCCTTTCSSSCGGG-CEE-BTEEHHHHHH-----HHHHTT-SCC-SCEEEEES
T ss_pred ccEEEEECCCCCccCCCCCCcce-EEE-CCeEHHHHHH-----HHHHcc-CCC-CeEEEEcC
Confidence 57889999999999 54458983 233 5889977654 444331 111 25677776
No 61
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Probab=75.51 E-value=3.7 Score=41.15 Aligned_cols=58 Identities=19% Similarity=0.320 Sum_probs=42.2
Q ss_pred hhccCcEEEEccCCeEeEEEEEec-c--CCCceEEEEEeccccccccCcccccccCCCCCCcEEEEecccCccceeecCC
Q 007117 129 RDLVGMRVVMKETGELVGTVVNVF-N--SGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 205 (617)
Q Consensus 129 ~DLIG~~V~d~~~g~~lG~V~dV~-~--~ga~dllvV~~~~~~~~~~~~~~~~~~~~~~~gke~LIPfv~~~V~~IDle~ 205 (617)
.|+.|+.|+. .+|+.+|+|.|++ + ++---.|||... .++.+|||+.- ..||-
T Consensus 146 ~d~~G~~Vyg-~DGe~iGsV~Dl~VD~~eg~VRYLVVdtG-------------------ggrkVLLP~~~---~riD~-- 200 (260)
T 1rzh_H 146 KNPIGLPVRG-CDLEIAGKVVDIWVDIPEQMARFLEVELK-------------------DGSTRLLPMQM---VKVQS-- 200 (260)
T ss_dssp CCCTTCEEEE-TTSCEEEEEEEEEEETTTTEEEEEEEECT-------------------TSCEEEEEGGG---CEECS--
T ss_pred CCCCCCEeEc-CCCCeeEEEEEEEEECCCCEEEEEEEEeC-------------------CCCEEEeeeEE---EEEcC--
Confidence 5899999996 5899999999986 3 343356777641 36789999874 45665
Q ss_pred CEEEEe
Q 007117 206 REMQIT 211 (617)
Q Consensus 206 ~~I~V~ 211 (617)
+.+.|+
T Consensus 201 ~~VyV~ 206 (260)
T 1rzh_H 201 NRVHVN 206 (260)
T ss_dssp SCEEES
T ss_pred CeEEEe
Confidence 677773
No 62
>2wjn_H Reaction center protein H chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_H* 1r2c_H* 1vrn_H* 1dxr_H* 2jbl_H* 2prc_H* 2i5n_H* 2wjm_H* 2x5u_H* 2x5v_H* 3d38_H* 3prc_H* 3t6e_H* 4ac5_H* 5prc_H* 6prc_H* 7prc_H* 3t6d_H* 3g7f_H*
Probab=75.19 E-value=4.3 Score=40.70 Aligned_cols=81 Identities=25% Similarity=0.302 Sum_probs=53.8
Q ss_pred cCCeEEEeCCCCCCCC-C-----------Cccc----HhhccCcEEEEccCCeEeEEEEEec-c--CCCceEEEEEeccc
Q 007117 107 VGSTLLAREGDRPELE-D-----------GEFY----TRDLVGMRVVMKETGELVGTVVNVF-N--SGANDLLHVMCYSS 167 (617)
Q Consensus 107 ~G~~l~v~~~~lp~L~-e-----------~EfY----~~DLIG~~V~d~~~g~~lG~V~dV~-~--~ga~dllvV~~~~~ 167 (617)
+|---|++|.|.|+|. + .+|+ -.|+.|+.|+. .+|+.+|+|.|++ + ++---.|||...
T Consensus 112 vGp~s~a~R~d~pdl~~~g~~~IvpL~~~~df~v~~~~~D~~G~~Vyg-~DGe~iGsV~Dl~VD~~eg~VRYLVVdtG-- 188 (258)
T 2wjn_H 112 VGPASYAERAEVVDATVDGKAKIVPLRVATDFSIAEGDVDPRGLPVVA-ADGVEAGTVTDLWVDRSEHYFRYLELSVA-- 188 (258)
T ss_dssp CGGGCCCCCCSSBCBCTTSSBSEEETTTCTTCEECTTSCCCTTCEEEC-TTSCEEEEEEEEEEETTTTEEEEEEEEET--
T ss_pred cCcccccccCCCcccCCCCCeeEEEeeecCCccccCCCCCCCCCEeEc-CCCCeeEEEEEEEEECCCCEEEEEEEEcC--
Confidence 3444566677766662 1 1342 35899999995 5899999999986 3 343356788752
Q ss_pred cccccCcccccccCCCCCCcEEEEecccCccceeecCCCEEEEe
Q 007117 168 VNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREMQIT 211 (617)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~gke~LIPfv~~~V~~IDle~~~I~V~ 211 (617)
..++.+|||+.- ..||- +.+.|+
T Consensus 189 ----------------gggrkVLLP~~~---~riD~--~~VyV~ 211 (258)
T 2wjn_H 189 ----------------GSARTALIPLGF---CDVKK--DKIVVT 211 (258)
T ss_dssp ----------------TTTEEEEEEGGG---CEECS--SCEECC
T ss_pred ----------------CCCCEEEeeeEE---EEEcC--CeEEEe
Confidence 136789999874 45665 667773
No 63
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}
Probab=74.62 E-value=3.6 Score=41.40 Aligned_cols=63 Identities=17% Similarity=0.133 Sum_probs=40.4
Q ss_pred ceEEEEEccCCCCCCC----CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 007117 355 KKAMVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 428 (617)
Q Consensus 355 kvavvllAGG~GtRg~----~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~ 428 (617)
.+.+|+||||.|||.. ..||.+ +++ .++++++... +++.+.+ .. .++|.|+.. .+.++++|..
T Consensus 8 ~~~avIlAaG~gtRl~plt~~~pK~l-l~i-~gkpli~~~l-----~~l~~~g--i~-~i~vv~~~~-~~~i~~~~~~ 74 (302)
T 2e3d_A 8 VKKAVIPVAGLGTRMLPATKAIPKEM-LPL-VDKPLIQYVV-----NECIAAG--IT-EIVLVTHSS-KNSIENHFDT 74 (302)
T ss_dssp CCEEEEECCSCCGGGTTTTSSSCGGG-CEE-TTEEHHHHHH-----HHHHHTT--CC-EEEEEECGG-GHHHHHHHSC
T ss_pred ccEEEEECCcCcccCCccccCCCcee-eEE-CCeEHHHHHH-----HHHHHCC--CC-EEEEEeCCC-HHHHHHHHhc
Confidence 3567899999999943 238973 333 4689977655 4444422 21 456777654 6778888764
No 64
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=73.51 E-value=4.1 Score=40.50 Aligned_cols=32 Identities=13% Similarity=0.068 Sum_probs=22.2
Q ss_pred eEEEEEccCCCCCCCCCCCcccccCCCCcchHHHHH
Q 007117 356 KAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQT 391 (617)
Q Consensus 356 vavvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~ 391 (617)
..+|++|||.|||.. .|.+ .++ .+|++++...
T Consensus 2 ~~aiIlA~G~stR~~--~K~L-~~i-~GkPli~~~i 33 (253)
T 4fcu_A 2 KHIVIPARFSSSRLP--GKPL-LLI-HDRPMILRVV 33 (253)
T ss_dssp EEEEEECCSCCTTST--TGGG-SEE-TTEEHHHHHH
T ss_pred eEEEEEeCCCCCCCC--CCce-eeE-CCeEhHHHHH
Confidence 467899999999953 3763 233 6888866533
No 65
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=71.56 E-value=3.4 Score=42.28 Aligned_cols=61 Identities=11% Similarity=0.033 Sum_probs=37.4
Q ss_pred eEEEEEccCCCCCCC----CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHH
Q 007117 356 KAMVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 427 (617)
Q Consensus 356 vavvllAGG~GtRg~----~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~ 427 (617)
..+|+||||.|||.. ..||.+ +++ .++++++... +++...+ .. .++|.|+.. .+.+.++|.
T Consensus 13 ~~aVIlAaG~gtRl~plt~~~pK~l-l~i-~gkpli~~~l-----~~l~~~g--i~-~iivv~~~~-~~~i~~~~~ 77 (323)
T 2pa4_A 13 KTVVVPAAGLGTRFLPATKTVPKEL-LPV-VDTPGIELIA-----AEAAELG--AT-RLAIITAPN-KAGVLAHFE 77 (323)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGGG-CEE-TTEEHHHHHH-----HHHHHTT--CC-EEEEEECTT-CHHHHHTTS
T ss_pred eEEEEECCCCccccCccccCCCcee-eeE-CCEEHHHHHH-----HHHHhCC--CC-EEEEEecCc-HHHHHHHHh
Confidence 557899999999943 248973 333 3789977655 4444322 21 456666653 456666553
No 66
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}
Probab=71.45 E-value=1.5 Score=41.68 Aligned_cols=51 Identities=6% Similarity=-0.035 Sum_probs=31.4
Q ss_pred ceEEEEEccCCCCCCCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCcc
Q 007117 355 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPAL 417 (617)
Q Consensus 355 kvavvllAGG~GtRg~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~ 417 (617)
++++|+||||.|||.+ .||.+ +++ .++++++... +.+.+. + -.++|.|+..
T Consensus 14 ~~~~iILA~G~g~Rmg-~~K~l-l~i-~g~pll~~~l-----~~l~~~---~-~~i~vv~~~~ 64 (201)
T 2e8b_A 14 VNTCYVLAGGKSKRFG-EDKLL-YEI-KGKKVIERVY-----ETAKSV---F-KEVYIVAKDR 64 (201)
T ss_dssp CCEEEEEEESSCCCCS-TTHHH-HHH-HHHHHHHHHH-----HHHHTT---C-SEEEEEESCS
T ss_pred CceEEEECCCCCccCC-CCccc-ceE-CceEHHHHHH-----HHHHHh---C-CEEEEEeCcH
Confidence 4788999999999953 67872 222 4677766544 333321 2 2566777654
No 67
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A
Probab=71.07 E-value=3.7 Score=34.48 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=24.3
Q ss_pred CceEEEEecCCCCHHHHhcccCCeEEE
Q 007117 87 QKSWILTFEGIDTVEQARPLVGSTLLA 113 (617)
Q Consensus 87 ~~~~ivkfegid~re~Ae~L~G~~l~v 113 (617)
.+..|+|++||+|+++|+-|.|..+..
T Consensus 19 ~~taLlkieGV~~~~~a~fylGKrvay 45 (87)
T 3j21_c 19 NNVMIIKPLDVNSREEASKLIGRLVLW 45 (87)
T ss_dssp TTCEEEEESSCCSHHHHGGGTTCEEEE
T ss_pred CCeEEEEEcCcCCHHHHHhhcCceEEE
Confidence 357899999999999999999998766
No 68
>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} SCOP: b.43.3.3 PDB: 2lp6_A
Probab=71.02 E-value=3.9 Score=34.83 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=24.2
Q ss_pred CceEEEEecCCCCHHHHhcccCCeEEE
Q 007117 87 QKSWILTFEGIDTVEQARPLVGSTLLA 113 (617)
Q Consensus 87 ~~~~ivkfegid~re~Ae~L~G~~l~v 113 (617)
.+..|+|++||+|+++|+-|.|..+..
T Consensus 19 ~~~aLlkIegV~~k~~a~fYlGKrvay 45 (95)
T 1sqr_A 19 NNVMIIKPLDVNSREEASKLIGRLVLW 45 (95)
T ss_dssp CCEEEEEESCCCCHHHHHHHTTCEEEE
T ss_pred CceEEEEEcCCCCHHHHHhhcCCeEEE
Confidence 467899999999999999999998755
No 69
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Probab=65.42 E-value=6.8 Score=40.79 Aligned_cols=58 Identities=16% Similarity=0.183 Sum_probs=37.3
Q ss_pred EEEEEccCCCCCCC----CCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 007117 357 AMVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 428 (617)
Q Consensus 357 avvllAGG~GtRg~----~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS~~t~~~T~~ff~~ 428 (617)
.+|+||||.|+|.. ..||.+ +++ .++++++... +++.+.+ .. .++|.|+.. +.+++.+
T Consensus 2 ~aiIlA~G~g~R~~plt~~~~K~l-l~i-~g~pli~~~l-----~~l~~~~--~~-~i~vv~~~~----i~~~~~~ 63 (401)
T 2ggo_A 2 KAFILAAGSGERLEPITHTRPKAF-VPI-LSKPLIEYQI-----EYLRKCG--IR-DITVIVSSK----NKEYFEK 63 (401)
T ss_dssp EEEEECCCCCGGGTTGGGTSCGGG-CEE-TTEEHHHHHH-----HHHHHTT--CC-EEEEEECGG----GHHHHHH
T ss_pred eEEEEcCcCccccCcccCCCCcce-eeE-CCEeHHHHHH-----HHHHHCC--CC-EEEEEeCHH----HHHHhhc
Confidence 36899999999953 448983 333 5788877655 4444422 21 467777765 6677765
No 70
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19
Probab=64.09 E-value=7 Score=37.65 Aligned_cols=50 Identities=6% Similarity=0.042 Sum_probs=30.8
Q ss_pred ceEEEEEccCC---CCCCCCCCCcccccCCCCcchHHHHHHHHhhHHHHhhcCCCcccEEEeCC
Q 007117 355 KKAMVLVVHNS---EEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLP 415 (617)
Q Consensus 355 kvavvllAGG~---GtRg~~~pK~~~i~l~s~kslf~l~~~i~~~~~l~~~~~~~~ip~~IMTS 415 (617)
++.+|+||||. |+|-+..||.+ +++ .++++++... +++.+.+ . .++|.|.
T Consensus 2 ~~~~vIlAaG~tRl~~r~~~~~K~l-~~i-~g~pll~~~l-----~~l~~~~--~--~ivvv~~ 54 (232)
T 2dpw_A 2 RPSAIVLAGGKEAWAERFGVGSKAL-VPY-RGRPMVEWVL-----EALYAAG--L--SPVYVGE 54 (232)
T ss_dssp CCEEEEECCCBCSGGGTTTCSBGGG-SEE-TTEETHHHHH-----HHHHHTT--C--EEEEESC
T ss_pred ceeEEEECCCCCccccccCCCCcee-eEE-CCEEHHHHHH-----HHHHhcC--C--EEEEEeC
Confidence 36788999999 66633358873 233 5789877654 4444322 2 5666654
No 71
>4a18_H RPL35A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_H 4a1b_H 4a1d_H
Probab=63.67 E-value=5.6 Score=34.91 Aligned_cols=58 Identities=14% Similarity=0.225 Sum_probs=39.1
Q ss_pred ceEEEEecCCCCHHHHhcccCCeEEE-eCCCCCCCCCCcccHhhccCcEEEEccCCeEeEEEEEeccCCCceEEEEEe
Q 007117 88 KSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMC 164 (617)
Q Consensus 88 ~~~ivkfegid~re~Ae~L~G~~l~v-~~~~lp~L~e~EfY~~DLIG~~V~d~~~g~~lG~V~dV~~~ga~dllvV~~ 164 (617)
+..|+|++||+|+++|+-+.|..+.. .+..-. -|-++. .+.|+|+...-+ .-+...+.
T Consensus 33 ~taLlKIeGV~~~~~a~fylGKrvayvykak~~------------~g~k~R-----viwGKVtR~HGn--sGvVrAkF 91 (113)
T 4a18_H 33 NQALLKLQNVNTKEDVAFYQGKRVVYIYKGQKK------------NGSNYR-----TIWGRIGKAHGN--NGVAVARF 91 (113)
T ss_dssp EEEEEEETTCCSHHHHHTTTTCEEEEEEEEEEE------------TTEEEE-----EEEEEEEEEETT--TTEEEEEE
T ss_pred CeEEEEEcCcCCHHHHHhhcCCeEEEEEecCCC------------CCCeEE-----EEEEEEEeeeCC--CCeEEEEe
Confidence 47899999999999999999997653 333210 132221 367999988654 34555554
No 72
>3izc_j 60S ribosomal protein RPL33 (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_j 3u5e_f 3u5i_f 4b6a_f
Probab=60.34 E-value=4.2 Score=35.38 Aligned_cols=30 Identities=17% Similarity=0.331 Sum_probs=24.8
Q ss_pred CceEEEEecCCCCHHHHhcccCCeE-EEeCC
Q 007117 87 QKSWILTFEGIDTVEQARPLVGSTL-LAREG 116 (617)
Q Consensus 87 ~~~~ivkfegid~re~Ae~L~G~~l-~v~~~ 116 (617)
.+..|+|++||+|+++|+-+.|..+ ||.+.
T Consensus 25 ~~taLlKIeGV~~~~~a~fylGKrvayvyka 55 (107)
T 3izc_j 25 PNVSLIKIEGVATPQDAQFYLGKRIAYVYRA 55 (107)
T ss_dssp CCEEEEEESSCSTTHHHHTTCCCCCCCCCCC
T ss_pred CCeEEEEEcCcCCHHHHHhhcCCEEEEEEec
Confidence 4678999999999999999999865 44444
No 73
>3iz5_j 60S ribosomal protein L35A (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_j
Probab=56.89 E-value=6.2 Score=34.57 Aligned_cols=60 Identities=13% Similarity=0.245 Sum_probs=40.2
Q ss_pred CceEEEEecCCCCHHHHhcccCCeE-EEeCCCCCCCCCCcccHhhccCcEEEEccCCeEeEEEEEeccCCCceEEEEEe
Q 007117 87 QKSWILTFEGIDTVEQARPLVGSTL-LAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMC 164 (617)
Q Consensus 87 ~~~~ivkfegid~re~Ae~L~G~~l-~v~~~~lp~L~e~EfY~~DLIG~~V~d~~~g~~lG~V~dV~~~ga~dllvV~~ 164 (617)
.+..|+|++||+|+++|+-+.|..+ ||.+..-+. . | ...-...|+|+...-+. -+...+.
T Consensus 29 ~~taLlKIeGV~~~~~a~fylGKrvayvykak~~~--~---------g-----~k~R~iwGKVtR~HGns--GvVrAkF 89 (111)
T 3iz5_j 29 ENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKTKS--N---------D-----STIRCIWGKVTRPHGNS--GVVRAKF 89 (111)
T ss_dssp CCEEEEEESSCSTTHHHHTTSCCCCEECCCCCSSS--C---------C-----CCSCCEECEEEEESSSS--SCEEEEC
T ss_pred CCeEEEEEcCcCCHHHHHhhcCcEEEEEEeccccC--C---------C-----ceEEEEEEEEEeeeCCC--CEEEEEe
Confidence 4688999999999999999999976 566654321 1 1 11124678888886543 3444443
No 74
>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} SCOP: b.43.3.3 PDB: 2lp6_A
Probab=47.76 E-value=7.5 Score=33.12 Aligned_cols=30 Identities=20% Similarity=0.380 Sum_probs=26.1
Q ss_pred eEEEEEEeccceeeeeEEEEeecCCccccc
Q 007117 26 FVDVGYVYSVHGLQGEISVKPSTDFPELRF 55 (617)
Q Consensus 26 ~v~IG~I~~~hGlkGevkv~~~td~p~~~f 55 (617)
.+..|+|.+|||-.|.|+.+.....|...+
T Consensus 51 rviwGKVtR~HGnsGvVrAkF~~nLP~kA~ 80 (95)
T 1sqr_A 51 KILKGKIVRVHGTKGAVRARFEKGLPGQAL 80 (95)
T ss_dssp CCEEEEEEEESSSSSCEEEECSSCCSSSCT
T ss_pred CEEEEEEEeeeCCCCEEEEEeCCCCChHHc
Confidence 678999999999999999998888776544
No 75
>4a18_H RPL35A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_H 4a1b_H 4a1d_H
Probab=46.83 E-value=8.6 Score=33.73 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=26.9
Q ss_pred eEEEEEEeccceeeeeEEEEeecCCcccccc
Q 007117 26 FVDVGYVYSVHGLQGEISVKPSTDFPELRFT 56 (617)
Q Consensus 26 ~v~IG~I~~~hGlkGevkv~~~td~p~~~f~ 56 (617)
.+.-|+|.++||-.|.|+.+.-+..|...+.
T Consensus 71 RviwGKVtR~HGnsGvVrAkF~~nLP~kA~G 101 (113)
T 4a18_H 71 RTIWGRIGKAHGNNGVAVARFAHNLPPQAIG 101 (113)
T ss_dssp EEEEEEEEEEETTTTEEEEEESSCCCGGGGG
T ss_pred EEEEEEEEeeeCCCCeEEEEeCCCCChHHcC
Confidence 4788999999999999999998888876553
No 76
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A
Probab=46.79 E-value=11 Score=31.57 Aligned_cols=29 Identities=21% Similarity=0.431 Sum_probs=24.9
Q ss_pred EEEEEEeccceeeeeEEEEeecCCccccc
Q 007117 27 VDVGYVYSVHGLQGEISVKPSTDFPELRF 55 (617)
Q Consensus 27 v~IG~I~~~hGlkGevkv~~~td~p~~~f 55 (617)
+.-|+|.++||-.|.|+.+..+..|...+
T Consensus 52 ~iwGKVtr~HGnsGvVrAkF~~nLP~~a~ 80 (87)
T 3j21_c 52 ILKGKIVRVHGTKGAVRARFEKGLPGQAL 80 (87)
T ss_dssp CEEEEEEEECCSSSCEEEEESSCCCSSCS
T ss_pred EEEEEEEeeeCCCCeEEEEeCCCCChHHc
Confidence 57899999999999999998887776533
No 77
>3iz5_j 60S ribosomal protein L35A (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_j
Probab=45.30 E-value=10 Score=33.22 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=27.9
Q ss_pred CeEEEEEEeccceeeeeEEEEeecCCccccccC
Q 007117 25 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTT 57 (617)
Q Consensus 25 ~~v~IG~I~~~hGlkGevkv~~~td~p~~~f~~ 57 (617)
-.+.-|+|.++||-.|.|+.+.-+..|...+..
T Consensus 68 ~R~iwGKVtR~HGnsGvVrAkF~~nLP~kA~G~ 100 (111)
T 3iz5_j 68 IRCIWGKVTRPHGNSGVVRAKFRSNLPPTSMGK 100 (111)
T ss_dssp SCCEECEEEEESSSSSCEEEECSSCCSTTCCSS
T ss_pred EEEEEEEEEeeeCCCCEEEEEeCCCCChHHcCC
Confidence 347889999999999999999988888765543
No 78
>3izc_j 60S ribosomal protein RPL33 (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_j 3u5e_f 3u5i_f 4b6a_f
Probab=40.41 E-value=8.6 Score=33.43 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=27.1
Q ss_pred eEEEEEEeccceeeeeEEEEeecCCccccccC
Q 007117 26 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTT 57 (617)
Q Consensus 26 ~v~IG~I~~~hGlkGevkv~~~td~p~~~f~~ 57 (617)
.+.-|+|.++||-.|.|+.+.-+..|...+..
T Consensus 65 RviwGKVtR~HGnsGvVrAkF~~nLP~kA~G~ 96 (107)
T 3izc_j 65 RVMWGKVTRTHGNSGVVRATFRNNLPAKTFGA 96 (107)
T ss_dssp CCCCCCEEECSSSSSCEEECCCSCCSTTCCSS
T ss_pred EEEEEEEEeeeCCCCeEEEEeCCCCChHHcCC
Confidence 47789999999999999999988888765543
No 79
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP, pseudouridine synthase, guide RNA, isomerase biosynthetic protein-RNA complex; HET: ATP; 2.30A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Probab=39.02 E-value=32 Score=29.71 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=27.2
Q ss_pred cCcEEEEccCCeEeEEEEEeccCCCceEEEEEe
Q 007117 132 VGMRVVMKETGELVGTVVNVFNSGANDLLHVMC 164 (617)
Q Consensus 132 IG~~V~d~~~g~~lG~V~dV~~~ga~dllvV~~ 164 (617)
+|..||| ++.+.+|+|.||+-.-.+..+.|+.
T Consensus 33 ~na~Vy~-enk~~IGKV~DIfGPV~~pY~sVKp 64 (104)
T 2hvy_B 33 LNDRVVD-KRLQFVGIVKDVFGPVKMPYVAIKP 64 (104)
T ss_dssp TTCEEEC-TTCCEEEEEEEEEEESSSCEEEEEE
T ss_pred CCCEeEc-CCCCEeEEEEEEECCCCCcEEEEEe
Confidence 5889996 6788999999999877778888875
No 80
>2ey4_C Small nucleolar RNP similar to GAR1; trimeric complex, structural genomics, PSI, protein structur initiative; 2.11A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3mqk_C 2rfk_C
Probab=35.79 E-value=30 Score=28.58 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=27.6
Q ss_pred cCcEEEEccCCeEeEEEEEeccCCCceEEEEEe
Q 007117 132 VGMRVVMKETGELVGTVVNVFNSGANDLLHVMC 164 (617)
Q Consensus 132 IG~~V~d~~~g~~lG~V~dV~~~ga~dllvV~~ 164 (617)
+|..||| ++.+.+|+|.||+-.-.+..+.|+.
T Consensus 33 ~na~Vy~-e~~~~IGkV~dIfGPv~~pY~sVk~ 64 (82)
T 2ey4_C 33 LNDRVVD-KRLQFVGIVKDVFGPVKMPYVAIKP 64 (82)
T ss_dssp TTCEEEC-TTCCCCEEEEEEEEESSSCEEEEEE
T ss_pred CCCEeEc-CCCCEeEEEEEEECCCCCcEEEEEe
Confidence 5889996 6788899999999888888888986
No 81
>3u28_C H/ACA ribonucleoprotein complex subunit 1; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_C
Probab=35.71 E-value=98 Score=27.12 Aligned_cols=33 Identities=15% Similarity=0.290 Sum_probs=26.7
Q ss_pred cCcEEEEccCCeEeEEEEEeccCCCceEEEEEec
Q 007117 132 VGMRVVMKETGELVGTVVNVFNSGANDLLHVMCY 165 (617)
Q Consensus 132 IG~~V~d~~~g~~lG~V~dV~~~ga~dllvV~~~ 165 (617)
.+..||+ ++.+.||+|.||+-.-.+..+.|+..
T Consensus 53 fNapVy~-enK~~IGKVdEIFGPin~~YfsVK~~ 85 (114)
T 3u28_C 53 FNAPIYL-ENKTQVGKVDEILGPLNEVFFTIKCG 85 (114)
T ss_dssp TTCEEEC-TTCCEEEEEEEEESBTTSCEEEEEEC
T ss_pred CCCEeEc-cCCccceeEeEEeCCCCccEEEEEec
Confidence 3778995 67888999999998777777788863
Done!