Query 007119
Match_columns 617
No_of_seqs 410 out of 2768
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 17:38:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007119.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007119hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 1.5E-75 5.2E-80 640.9 46.4 469 76-611 19-508 (536)
2 3g7s_A Long-chain-fatty-acid-- 100.0 5.2E-75 1.8E-79 638.5 47.5 473 77-612 17-516 (549)
3 3rix_A Luciferase, luciferin 4 100.0 1.8E-75 6.1E-80 642.3 42.2 472 77-607 18-509 (550)
4 1v25_A Long-chain-fatty-acid-C 100.0 1E-74 3.5E-79 634.7 46.7 468 79-612 18-510 (541)
5 3etc_A AMP-binding protein; ad 100.0 2.1E-74 7.2E-79 636.1 48.4 474 76-612 53-553 (580)
6 2d1s_A Luciferase, luciferin 4 100.0 2.6E-74 8.9E-79 632.2 46.1 471 77-611 23-515 (548)
7 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1.5E-74 5.1E-79 633.2 41.2 463 78-612 24-505 (539)
8 3r44_A Fatty acyl COA syntheta 100.0 4.2E-74 1.5E-78 626.3 43.3 465 75-612 12-487 (517)
9 4fuq_A Malonyl COA synthetase; 100.0 4.4E-74 1.5E-78 624.1 40.9 460 83-612 4-474 (503)
10 3o83_A Peptide arylation enzym 100.0 3.2E-74 1.1E-78 631.2 40.2 469 77-613 28-515 (544)
11 3c5e_A Acyl-coenzyme A synthet 100.0 7.4E-73 2.5E-77 622.9 49.4 470 77-612 36-536 (570)
12 1pg4_A Acetyl-COA synthetase; 100.0 7.2E-73 2.5E-77 632.4 46.7 484 76-612 73-595 (652)
13 1t5h_X 4-chlorobenzoyl COA lig 100.0 7.5E-73 2.6E-77 615.1 44.9 455 78-612 1-478 (504)
14 1ry2_A Acetyl-coenzyme A synth 100.0 4.1E-72 1.4E-76 626.6 46.3 487 75-612 78-611 (663)
15 4gr5_A Non-ribosomal peptide s 100.0 4.5E-73 1.5E-77 625.6 36.5 449 76-613 72-546 (570)
16 1amu_A GRSA, gramicidin synthe 100.0 3.1E-72 1.1E-76 617.1 41.9 448 76-612 36-503 (563)
17 3ivr_A Putative long-chain-fat 100.0 1.2E-72 4E-77 614.5 38.1 459 77-612 4-475 (509)
18 2v7b_A Benzoate-coenzyme A lig 100.0 7.9E-72 2.7E-76 610.9 44.6 469 77-612 22-506 (529)
19 3fce_A D-alanine--poly(phospho 100.0 6.6E-72 2.3E-76 609.0 39.1 451 79-612 1-478 (512)
20 3e7w_A D-alanine--poly(phospho 100.0 3E-71 1E-75 603.5 44.0 450 79-612 1-477 (511)
21 4dg8_A PA1221; ANL superfamily 100.0 1.2E-71 4.2E-76 617.5 38.2 447 76-612 24-487 (620)
22 3rg2_A Enterobactin synthase c 100.0 1.3E-70 4.5E-75 611.3 44.4 466 77-612 25-508 (617)
23 3l8c_A D-alanine--poly(phospho 100.0 2.8E-71 9.6E-76 605.6 38.2 450 78-612 3-486 (521)
24 3tsy_A Fusion protein 4-coumar 100.0 2.8E-71 9.7E-76 648.0 40.8 476 76-612 58-556 (979)
25 3ipl_A 2-succinylbenzoate--COA 100.0 1.8E-70 6.3E-75 596.2 36.3 459 80-612 2-471 (501)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 7.3E-71 2.5E-75 598.8 31.0 449 77-612 20-482 (505)
27 3kxw_A Saframycin MX1 syntheta 100.0 9.3E-69 3.2E-73 594.9 37.4 456 77-603 9-528 (590)
28 3ite_A SIDN siderophore synthe 100.0 1.2E-68 4.2E-73 589.9 36.0 461 76-613 17-517 (562)
29 3gqw_A Fatty acid AMP ligase; 100.0 7.2E-67 2.5E-71 578.3 43.6 454 75-603 17-525 (576)
30 2vsq_A Surfactin synthetase su 100.0 7.1E-67 2.4E-71 625.8 45.4 450 78-612 463-934 (1304)
31 3t5a_A Long-chain-fatty-acid-- 100.0 8.7E-63 3E-67 533.3 32.6 400 77-543 22-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 6.5E-48 2.2E-52 399.0 18.2 281 255-612 36-328 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 1.8E-44 6.1E-49 384.6 27.5 309 232-603 64-400 (436)
34 2y27_A Phenylacetate-coenzyme 100.0 4.4E-44 1.5E-48 381.7 26.9 309 233-603 70-402 (437)
35 2y4o_A Phenylacetate-coenzyme 100.0 7.5E-44 2.6E-48 380.6 28.4 310 232-603 71-406 (443)
36 3hgu_A EHPF; phenazine, antibi 100.0 9.4E-31 3.2E-35 272.3 17.9 236 253-554 88-368 (369)
37 4b2g_A GH3-1 auxin conjugating 98.9 1.5E-07 5E-12 100.9 22.3 128 413-566 307-457 (609)
38 4eql_A 4-substituted benzoates 98.8 8.8E-08 3E-12 102.4 16.3 133 413-568 302-447 (581)
39 4epl_A Jasmonic acid-amido syn 98.7 2.3E-07 8E-12 98.9 16.5 164 411-600 302-500 (581)
40 3lax_A Phenylacetate-coenzyme 98.5 1.3E-07 4.5E-12 78.7 6.4 50 542-592 1-53 (109)
41 3gxs_A Phenylacetate-coenzyme 98.5 1.3E-07 4.4E-12 78.7 5.5 49 542-591 1-52 (109)
42 2y27_A Phenylacetate-coenzyme 93.3 0.96 3.3E-05 46.8 14.0 123 92-217 88-220 (437)
43 2y4o_A Phenylacetate-coenzyme 93.2 1 3.6E-05 46.5 14.0 123 92-217 90-222 (443)
44 3qov_A Phenylacetate-coenzyme 92.7 0.86 2.9E-05 47.1 12.6 121 94-217 86-216 (436)
45 1mdb_A 2,3-dihydroxybenzoate-A 82.3 23 0.00079 37.3 15.4 120 92-217 180-308 (539)
46 3ipl_A 2-succinylbenzoate--COA 81.8 23 0.00077 36.9 15.0 119 92-216 161-283 (501)
47 3hgu_A EHPF; phenazine, antibi 81.0 7.3 0.00025 38.9 10.4 105 92-200 89-220 (369)
48 2d1s_A Luciferase, luciferin 4 80.9 10 0.00034 40.3 11.9 119 94-216 192-318 (548)
49 3r44_A Fatty acyl COA syntheta 80.0 19 0.00066 37.7 13.7 118 93-217 169-294 (517)
50 3o83_A Peptide arylation enzym 79.5 19 0.00067 38.0 13.6 120 92-217 189-317 (544)
51 4gs5_A Acyl-COA synthetase (AM 77.8 11 0.00037 37.5 10.3 120 89-216 32-157 (358)
52 1t5h_X 4-chlorobenzoyl COA lig 76.3 14 0.00049 38.5 11.3 119 92-216 151-281 (504)
53 3rix_A Luciferase, luciferin 4 75.6 17 0.00058 38.5 11.7 122 93-217 189-317 (550)
54 3e7w_A D-alanine--poly(phospho 75.2 21 0.00071 37.4 12.2 120 92-216 141-269 (511)
55 3rg2_A Enterobactin synthase c 74.3 46 0.0016 35.7 15.0 119 93-217 183-312 (617)
56 3ivr_A Putative long-chain-fat 73.9 46 0.0016 34.6 14.5 118 92-216 158-281 (509)
57 3fce_A D-alanine--poly(phospho 73.9 16 0.00056 38.1 11.0 120 92-216 142-270 (512)
58 3c5e_A Acyl-coenzyme A synthet 72.3 22 0.00076 37.8 11.7 121 92-217 204-332 (570)
59 1pg4_A Acetyl-COA synthetase; 72.1 21 0.00072 38.8 11.6 122 92-217 254-388 (652)
60 1v25_A Long-chain-fatty-acid-C 71.2 21 0.00071 37.7 11.1 122 92-216 174-302 (541)
61 3kxw_A Saframycin MX1 syntheta 69.9 28 0.00097 37.0 11.9 120 92-216 165-298 (590)
62 2cvi_A 75AA long hypothetical 69.0 10 0.00035 28.4 5.9 45 558-603 15-59 (83)
63 3ni2_A 4-coumarate:COA ligase; 68.1 23 0.00079 37.2 10.6 123 92-217 176-307 (536)
64 3g7s_A Long-chain-fatty-acid-- 67.8 38 0.0013 35.7 12.3 118 94-217 180-306 (549)
65 1ry2_A Acetyl-coenzyme A synth 67.0 26 0.00088 38.2 10.9 122 92-217 260-394 (663)
66 3etc_A AMP-binding protein; ad 66.1 26 0.00088 37.4 10.5 121 92-217 223-351 (580)
67 4dg8_A PA1221; ANL superfamily 65.8 44 0.0015 36.0 12.3 120 92-217 162-286 (620)
68 3ite_A SIDN siderophore synthe 63.9 30 0.001 36.6 10.5 122 94-217 175-304 (562)
69 4gr5_A Non-ribosomal peptide s 61.9 34 0.0012 36.3 10.5 120 92-217 212-336 (570)
70 1amu_A GRSA, gramicidin synthe 60.6 33 0.0011 36.4 10.0 119 92-217 180-303 (563)
71 2zbc_A 83AA long hypothetical 58.1 15 0.00052 27.3 5.0 45 558-603 15-59 (83)
72 3nyq_A Malonyl-COA ligase; A/B 52.3 1E+02 0.0035 31.9 12.1 103 92-201 153-259 (505)
73 3tsy_A Fusion protein 4-coumar 51.2 51 0.0017 37.7 10.2 123 92-217 223-354 (979)
74 2v7b_A Benzoate-coenzyme A lig 50.5 31 0.0011 36.1 7.7 105 92-201 181-290 (529)
75 3gqw_A Fatty acid AMP ligase; 49.7 65 0.0022 33.9 10.2 120 93-216 175-308 (576)
76 4fuq_A Malonyl COA synthetase; 45.9 1E+02 0.0036 31.8 10.9 116 92-215 153-276 (503)
77 3l8c_A D-alanine--poly(phospho 44.4 1.5E+02 0.0053 30.5 12.0 121 93-216 144-273 (521)
78 2djw_A Probable transcriptiona 42.2 34 0.0012 26.0 4.8 44 558-602 15-58 (92)
79 3t5a_A Long-chain-fatty-acid-- 41.7 2.1E+02 0.0072 28.9 12.4 103 254-359 37-148 (480)
80 3tbh_A O-acetyl serine sulfhyd 39.0 1E+02 0.0035 30.0 8.8 66 129-194 61-127 (334)
81 2vsq_A Surfactin synthetase su 37.9 83 0.0028 37.3 9.4 120 92-217 605-730 (1304)
82 2cg4_A Regulatory protein ASNC 35.8 72 0.0024 26.8 6.3 45 558-603 82-126 (152)
83 3i4p_A Transcriptional regulat 32.7 69 0.0023 27.4 5.7 44 558-602 79-122 (162)
84 3ist_A Glutamate racemase; str 32.0 1.3E+02 0.0046 28.2 8.1 76 84-166 20-95 (269)
85 3ezx_A MMCP 1, monomethylamine 30.7 1.6E+02 0.0053 26.6 8.0 52 298-349 94-149 (215)
86 2p5v_A Transcriptional regulat 30.6 97 0.0033 26.3 6.4 45 558-603 85-129 (162)
87 3ju7_A Putative PLP-dependent 30.1 1.3E+02 0.0043 29.8 8.0 61 129-192 69-136 (377)
88 2dbb_A Putative HTH-type trans 29.9 1E+02 0.0034 25.8 6.3 44 558-602 82-126 (151)
89 3ffh_A Histidinol-phosphate am 29.1 3.9E+02 0.013 25.5 12.9 78 135-217 105-194 (363)
90 2cfx_A HTH-type transcriptiona 28.2 1.2E+02 0.0042 25.0 6.5 44 558-602 78-121 (144)
91 2jgn_A DBX, DDX3, ATP-dependen 26.9 3E+02 0.01 23.7 9.2 89 122-217 32-123 (185)
92 4h1h_A LMO1638 protein; MCCF-l 26.8 1.6E+02 0.0054 28.6 7.8 60 134-193 8-86 (327)
93 1t5i_A C_terminal domain of A 24.2 3.1E+02 0.01 23.2 8.6 87 123-217 19-108 (172)
94 3sr3_A Microcin immunity prote 23.8 2.1E+02 0.0071 27.9 8.0 60 134-193 9-87 (336)
95 2rb4_A ATP-dependent RNA helic 23.7 3.3E+02 0.011 23.0 10.0 88 122-217 21-111 (175)
96 3vc3_A Beta-cyanoalnine syntha 23.4 2E+02 0.0069 28.0 7.9 65 130-194 77-142 (344)
97 2cyy_A Putative HTH-type trans 23.1 1.1E+02 0.0038 25.5 5.3 42 558-600 80-121 (151)
98 2hjv_A ATP-dependent RNA helic 23.0 3.3E+02 0.011 22.7 9.0 86 124-217 24-112 (163)
99 3euc_A Histidinol-phosphate am 22.2 5.1E+02 0.018 24.6 12.9 55 135-192 106-164 (367)
100 2e1c_A Putative HTH-type trans 22.1 1.3E+02 0.0044 26.0 5.5 42 558-600 100-141 (171)
101 3tla_A MCCF; serine protease, 21.2 2.2E+02 0.0076 28.1 7.7 60 134-193 39-117 (371)
102 2r2n_A Kynurenine/alpha-aminoa 20.9 6E+02 0.021 24.9 11.5 55 135-192 129-197 (425)
103 4e5s_A MCCFLIKE protein (BA_56 20.6 2.3E+02 0.008 27.4 7.6 60 134-193 8-86 (331)
104 3b8x_A WBDK, pyridoxamine 5-ph 20.0 2.7E+02 0.0091 27.2 8.2 77 134-217 76-162 (390)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1.5e-75 Score=640.87 Aligned_cols=469 Identities=25% Similarity=0.364 Sum_probs=398.8
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
+...|+.++|.++++++||++|+.+. ++. +++||+||.++++++|++|.+.|+++||+|+|+++|+++|++++
T Consensus 19 p~~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 91 (536)
T 3ni2_A 19 PKNLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAF 91 (536)
T ss_dssp CSSCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence 34579999999999999999999753 221 46999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEee
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~ 235 (617)
+||+++|++++|+++.++.+++.+++++++++++|++....+.+.+..... .++ ++.++... .....
T Consensus 92 la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~-~~~~~~~~-----------~~~~~ 158 (536)
T 3ni2_A 92 LGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES-DVK-VMCVDSAP-----------DGCLH 158 (536)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH-TCE-EEESSCCC-----------TTCEE
T ss_pred HHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc-Cce-EEEecCCC-----------CCccC
Confidence 999999999999999999999999999999999999988777766554322 232 44444321 12356
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhc----CcccCCCcEEEEeCChHHHHH
Q 007119 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL----GTKFYPSDVYISYLPLAHIYE 311 (617)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~lPl~h~~~ 311 (617)
++++....... .+.....++|+++|+|||||||.||||++||+++++.+..... .+.+.++|++++.+|++|.++
T Consensus 159 ~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 237 (536)
T 3ni2_A 159 FSELTQADENE-APQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYA 237 (536)
T ss_dssp THHHHTSCGGG-CCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHH
T ss_pred HHHHhhccccc-cccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHH
Confidence 67776544332 2344567899999999999999999999999999988766543 356889999999999999999
Q ss_pred HHH-HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhc
Q 007119 312 RAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (617)
Q Consensus 312 ~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 389 (617)
+.. .+.++..|+++++.+ +++..+++.++++++|++.++|+++..+.+...
T Consensus 238 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------------- 290 (536)
T 3ni2_A 238 LNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD--------------------------- 290 (536)
T ss_dssp HHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSC---------------------------
T ss_pred HHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcc---------------------------
Confidence 966 567899999999987 799999999999999999999999998765200
Q ss_pred CCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccC-----CCCCCCCC
Q 007119 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQL-----DEGDNLSG 463 (617)
Q Consensus 390 ~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~-----~~~~~~~~ 463 (617)
......++||.+++||+++++++.+++++.| +++++++||+||++.+++.. .+.+...+
T Consensus 291 ---------------~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~ 355 (536)
T 3ni2_A 291 ---------------LDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPG 355 (536)
T ss_dssp ---------------GGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTT
T ss_pred ---------------cccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCC
Confidence 0111125899999999999999999999998 89999999999998655432 22345678
Q ss_pred CcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEec
Q 007119 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (617)
Q Consensus 464 ~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR 543 (617)
++|+|+++++++|+|++++..++.|+ .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||
T Consensus 356 ~~G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR 432 (536)
T 3ni2_A 356 ACGTVVRNAEMKIVDPETGASLPRNQ---PGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDR 432 (536)
T ss_dssp CCCEECSSCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEE
T ss_pred CeeEeCCCcEEEEEeCCCCcCCCCCC---ccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEec
Confidence 99999999999999987788888886 899999999999999999999999999999999999999999999999999
Q ss_pred CCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCCCCChhh
Q 007119 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGIQSLAPS 611 (617)
Q Consensus 544 ~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~~~~~~~~~~~~~~~~~ 611 (617)
+||+||+ +|++|+|.|||++|.+||+|.+++|+|.+++ +.++|+|++. .++++++++++...+++|.
T Consensus 433 ~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~ 508 (536)
T 3ni2_A 433 LKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIK 508 (536)
T ss_dssp CSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGCCS
T ss_pred ccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCCCHHHHHHHHHHhccCCcccc
Confidence 9999997 8999999999999999999999999997643 4788999863 4789999998866666654
No 2
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=5.2e-75 Score=638.47 Aligned_cols=473 Identities=23% Similarity=0.317 Sum_probs=389.8
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCc--cCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGT--VGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~--~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 154 (617)
...|+.++|.++++++||++|+.+. ++. .+..+++||+||.++++++|++|.+.|+++||+|+|+++|+++|+++
T Consensus 17 ~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~ 93 (549)
T 3g7s_A 17 PKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMT 93 (549)
T ss_dssp CCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHH
Confidence 3579999999999999999999886 421 23346799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEe
Q 007119 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (617)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~ 234 (617)
++||+++|+++|||++.++.+++.+++++++++++|++....+.+.......+ ++.++..+.. ..
T Consensus 94 ~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------------~~ 158 (549)
T 3g7s_A 94 IYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG-VERVFVVGGE--------------VN 158 (549)
T ss_dssp HHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC-CCEEEEETCS--------------SS
T ss_pred HHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC-CcEEEEeCCC--------------Cc
Confidence 99999999999999999999999999999999999999988877776665544 5556665431 24
Q ss_pred eHHHHHhcCccCCCCCCCCCC-CCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHH
Q 007119 235 TYSNLLSQGRSNLQPFSPPKP-DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERA 313 (617)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~-~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~ 313 (617)
++.++...+.... +.....+ +|+++|+|||||||.||||++||+++++.+......+++.++|++++.+|++|.+++.
T Consensus 159 ~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~ 237 (549)
T 3g7s_A 159 SLSEVMDSGSEDF-ENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFG 237 (549)
T ss_dssp CHHHHHHHSCSCC-CCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHH
T ss_pred CHHHHHhcCcccc-ccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHH
Confidence 5777766544322 2223334 8999999999999999999999999999988887778899999999999999999988
Q ss_pred HHHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCC
Q 007119 314 NQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (617)
Q Consensus 314 ~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (617)
..+.++..|+++++.+ +++..+++.++++++|+++++|+++..+.+.......
T Consensus 238 ~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------------- 291 (549)
T 3g7s_A 238 LVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK-------------------------- 291 (549)
T ss_dssp HHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC--------------------------
T ss_pred HHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc--------------------------
Confidence 8778899999999987 8999999999999999999999999998774321100
Q ss_pred CCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHh----hC---CceeccccccccccccccCCCCC-CCCCC
Q 007119 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC----FG---GRVTEGYGMTETSCLISQLDEGD-NLSGH 464 (617)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~----~~---~~v~~~YG~TE~~~~~~~~~~~~-~~~~~ 464 (617)
....+++|.+++||+++++++.+.+.+. ++ ++++++||+||++.+++...... ...++
T Consensus 292 --------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~ 357 (549)
T 3g7s_A 292 --------------TYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTT 357 (549)
T ss_dssp --------------CCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTS
T ss_pred --------------cCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccccCcCCC
Confidence 0011589999999999999999999887 56 88999999999998776654433 56789
Q ss_pred cCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccC--CCC--eeeecceEEEecCCcEEE
Q 007119 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID--EDG--WFHTGDIGMWIPGGRLKI 540 (617)
Q Consensus 465 vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~--~~g--w~~TGDlg~~~~dG~l~i 540 (617)
+|.|+++++++|+|+++++.++.|+ .|||+|+|+++++|||++|+.|++.|. .+| ||+|||+|++|+||+|+|
T Consensus 358 ~G~p~~~~~~~i~d~~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~ 434 (549)
T 3g7s_A 358 QGVPMSDIELKVISLEDGRELGVGE---SGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHF 434 (549)
T ss_dssp CCEECTTCEEEEECSSSCCEECTTC---CEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEE
T ss_pred ccccCCCCEEEEEeCCCCcCCCCCC---ceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEE
Confidence 9999999999999988888888887 899999999999999999999999983 677 999999999999999999
Q ss_pred EecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC--------HHHHHHHHHHcCCCCCh
Q 007119 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD--------QDALKAWAASEGIQSLA 609 (617)
Q Consensus 541 ~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~--------~~~~~~~~~~~~~~~~~ 609 (617)
+||+||+||+ +|++|+|.|||++|.+||+|.+++|+|.+++ +.++|+|+++ .+++.+|++++...+++
T Consensus 435 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~ 513 (549)
T 3g7s_A 435 QDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKR 513 (549)
T ss_dssp EEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTTSCCHHHHHHHHHTTCC----
T ss_pred eccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCcCCHHHHHHHHHHhccCccc
Confidence 9999999997 8999999999999999999999999998754 4788999864 46899999988776777
Q ss_pred hhh
Q 007119 610 PSD 612 (617)
Q Consensus 610 ~~~ 612 (617)
|..
T Consensus 514 P~~ 516 (549)
T 3g7s_A 514 VRE 516 (549)
T ss_dssp -CC
T ss_pred ceE
Confidence 764
No 3
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.8e-75 Score=642.33 Aligned_cols=472 Identities=22% Similarity=0.323 Sum_probs=344.2
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
...|+.++|.++++++||++|++... ++.. .+.+||+||.++++++|++|++.|+++||+|+|+++|+++|+++++
T Consensus 18 ~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 93 (550)
T 3rix_A 18 EDGTAGEQLHKAMKRYALVPGTIAFT--DAHI--EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVL 93 (550)
T ss_dssp CCSCHHHHHHHHHHHHHTSTTCEEEE--ETTT--CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCCceEEEee--ecCC--CcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHH
Confidence 34799999999999999999986321 2211 2569999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeH
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~ 236 (617)
||+++|+++||+++.++.+++.+++++++++++|++.+..+.+......++.++.++.++..... ....++
T Consensus 94 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 164 (550)
T 3rix_A 94 GALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY---------QGFQSM 164 (550)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCB---------TTBCBH
T ss_pred HHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccc---------cCcccH
Confidence 99999999999999999999999999999999999999888888877777878888876653211 123456
Q ss_pred HHHHhcCccCC------CCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcC---cccCCCcEEEEeCChH
Q 007119 237 SNLLSQGRSNL------QPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG---TKFYPSDVYISYLPLA 307 (617)
Q Consensus 237 ~~l~~~~~~~~------~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~lPl~ 307 (617)
.++........ .+.....++|+++|+|||||||.||||++||++++..+...... ..+.++|++++++|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 244 (550)
T 3rix_A 165 YTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFH 244 (550)
T ss_dssp HHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTT
T ss_pred HHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHH
Confidence 66654332211 11122346889999999999999999999999999887766554 5678999999999999
Q ss_pred HHHHHHHHHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 007119 308 HIYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (617)
Q Consensus 308 h~~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 386 (617)
|.+++...+.+++.|+++++.+ +++..+++.++++++|+++++|+++..+.+...
T Consensus 245 ~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------ 300 (550)
T 3rix_A 245 HGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL------------------------ 300 (550)
T ss_dssp SHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCG------------------------
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcc------------------------
Confidence 9999988888999999999987 799999999999999999999999998866210
Q ss_pred HhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCc-eeccccccccccccccCCCCCCCCCCc
Q 007119 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR-VTEGYGMTETSCLISQLDEGDNLSGHV 465 (617)
Q Consensus 387 ~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~-v~~~YG~TE~~~~~~~~~~~~~~~~~v 465 (617)
......++||.+++||+++++++.+++++.+++. ++++||+||+++.++.....+...+++
T Consensus 301 ------------------~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~v 362 (550)
T 3rix_A 301 ------------------IDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAV 362 (550)
T ss_dssp ------------------GGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTEE
T ss_pred ------------------ccccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCCCCCCCc
Confidence 0011125899999999999999999999999875 899999999998877776666778999
Q ss_pred CCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCC
Q 007119 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKK 545 (617)
Q Consensus 466 G~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~ 545 (617)
|+|+++++++|+|++++..++.|+ .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||+|
T Consensus 363 G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~d 439 (550)
T 3rix_A 363 GKVVPFFEAKVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLK 439 (550)
T ss_dssp EEECTTCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC----
T ss_pred ccccCCcEEEEEeCCCCcCCCCCC---CeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecch
Confidence 999999999999987788888776 99999999999999999999999999999999999999999999999999999
Q ss_pred CeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCCCC
Q 007119 546 NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGIQS 607 (617)
Q Consensus 546 d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~~~~~~~~~~~~~ 607 (617)
|+||+ +|++|+|.|||++|.+||+|.+++|+|.++. +.++|+|++. .+++.+|++++...+
T Consensus 440 d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~ 509 (550)
T 3rix_A 440 SLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTA 509 (550)
T ss_dssp -----------------------------------------------------------------------
T ss_pred heeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCCCHHHHHHHHHHhcccc
Confidence 99997 8999999999999999999999999998754 5778888864 357888888776554
No 4
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=1e-74 Score=634.69 Aligned_cols=468 Identities=24% Similarity=0.311 Sum_probs=376.4
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007119 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (617)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (617)
.|+.++|.++++++||++|+.+. +. +..+++||+||.++++++|++|+++|+++||+|+|+++|+++|+++++||
T Consensus 18 ~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 92 (541)
T 1v25_A 18 LNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAV 92 (541)
T ss_dssp CCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 58999999999999999999864 22 23467999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHHH
Q 007119 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (617)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (617)
+++|+++||+++.++.+++.+++++++++++|++.+..+.+......++.++.++.++.... . ....|++
T Consensus 93 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--~~~~~~~ 162 (541)
T 1v25_A 93 PGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAP--------E--GYLAYEE 162 (541)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCC--------T--TCEEHHH
T ss_pred HhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCC--------c--ccccHHH
Confidence 99999999999999999999999999999999998887777776666677777776654221 0 1246776
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhh--hcCcccCCCcEEEEeCChHHHHHHHHHH
Q 007119 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA--TLGTKFYPSDVYISYLPLAHIYERANQV 316 (617)
Q Consensus 239 l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~d~~l~~lPl~h~~~~~~~~ 316 (617)
+...... .....++|+++|+|||||||.||||++||++++...... ...+.+.++|++++++|++|.+++...+
T Consensus 163 ~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~ 238 (541)
T 1v25_A 163 ALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPY 238 (541)
T ss_dssp HCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHH
T ss_pred HhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHH
Confidence 6543221 134567899999999999999999999999998776653 3446788999999999999999987777
Q ss_pred HHHHhCcEEEEec--CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCC
Q 007119 317 MTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPS 394 (617)
Q Consensus 317 ~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 394 (617)
.+++.|+++++.+ +++..+++.++++++|+++++|+++..+.+.....
T Consensus 239 ~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------------ 288 (541)
T 1v25_A 239 AATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLEST------------------------------ 288 (541)
T ss_dssp HHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHH------------------------------
T ss_pred HHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhcc------------------------------
Confidence 8899999999986 59999999999999999999999999987743211
Q ss_pred chhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCC-----------CCCC
Q 007119 395 PMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-----------NLSG 463 (617)
Q Consensus 395 ~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-----------~~~~ 463 (617)
....++||.+++||+++++++.+++ +.+|++++++||+||++.+++...... ...+
T Consensus 289 ------------~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (541)
T 1v25_A 289 ------------GHRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKA 355 (541)
T ss_dssp ------------TCCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHT
T ss_pred ------------CCcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccCccccccccC
Confidence 0011589999999999999999999 567999999999999987766543321 1347
Q ss_pred CcCCCCcCeEEEEeecCCCCCCCC-CCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEe
Q 007119 464 HVGSPNAACEIKLVDVPEMNYTSE-DQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542 (617)
Q Consensus 464 ~vG~p~~~~~v~ivd~~~~~~~~~-~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~g 542 (617)
++|+|+++++++|+| ++++.++. +. +.|||+|+||+++.|||++|+.|++.|..+|||+|||+|++|+||+|+|+|
T Consensus 356 ~~G~p~~~~~~~i~d-~~g~~~~~~~~--~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~G 432 (541)
T 1v25_A 356 KTGLPIPLVRLRVAD-EEGRPVPKDGK--ALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKD 432 (541)
T ss_dssp SCBEECTTCEEEEEC-TTSCBCCSSSC--CCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEE
T ss_pred CCCCcCCCcEEEEEC-CCCCCCCCCCC--cceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEee
Confidence 899999999999999 55666553 21 279999999999999999999999999879999999999999999999999
Q ss_pred cCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC-----HHHHHHHHHH-cCCCCChhhh
Q 007119 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD-----QDALKAWAAS-EGIQSLAPSD 612 (617)
Q Consensus 543 R~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-----~~~~~~~~~~-~~~~~~~~~~ 612 (617)
|+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.+++ +.++|+|+++ .+++.+++++ +...+++|..
T Consensus 433 R~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~l~~~~~~~~L~~~~~P~~ 510 (541)
T 1v25_A 433 RLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDA 510 (541)
T ss_dssp ESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-------------------CCCTTTSCSB
T ss_pred cccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCCCCHHHHHHHHHhccCccccCCcE
Confidence 99999996 9999999999999999999999999998754 5788998863 4678888887 5545666653
No 5
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=2.1e-74 Score=636.14 Aligned_cols=474 Identities=18% Similarity=0.245 Sum_probs=401.6
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
..++..+++|+++++++||++|+.+. +.. +..+++||+||.++++++|++|+++|+++||+|+|+++|++||++++
T Consensus 53 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~~-g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~ 128 (580)
T 3etc_A 53 ENFNFAYDVVDVYARDSPEKLAMIWC---DDY-GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCM 128 (580)
T ss_dssp SSCCHHHHTHHHHHHHCTTCEEEEEE---ESS-SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHH
T ss_pred ccchHHHHHHHHHHhhCCCCEEEEEE---cCC-CCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 34566679999999999999999975 332 44578999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccch--HHHHhhccCCCCc-eEEEEECCCCCCCCCCCccCCce
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL--NSLLSCLSEVPTV-RLIVVIGGIDDQIPSLPITTGVQ 232 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~--~~l~~~~~~~~~~-~~iv~~~~~~~~~~~~~~~~~~~ 232 (617)
+||+++|+++||+++.++.+++.+++++++++++|++.+.. +.+.+....++.+ ..++.++... ...
T Consensus 129 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 198 (580)
T 3etc_A 129 LGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDV----------LEG 198 (580)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSC----------CTT
T ss_pred HHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCcc----------ccc
Confidence 99999999999999999999999999999999999987764 5555555444544 4555555321 112
Q ss_pred EeeHHHHHhcCccCCCCC---CCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHH
Q 007119 233 ILTYSNLLSQGRSNLQPF---SPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHI 309 (617)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~---~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~ 309 (617)
+.++.+.+.........+ ....++|+++|+|||||||.||||+++|.+++..+........+.+++++++.+|+.|.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (580)
T 3etc_A 199 WIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWG 278 (580)
T ss_dssp CEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTST
T ss_pred cccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHH
Confidence 466777765443321111 24678999999999999999999999999998887776666788999999999999999
Q ss_pred HHHHH-HHHHHHhCcEEEEec---CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q 007119 310 YERAN-QVMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQ 385 (617)
Q Consensus 310 ~~~~~-~~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 385 (617)
.+.+. .+.++..|+++++++ +++..+++.|+++++|+++++|++++.|.+..
T Consensus 279 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~------------------------ 334 (580)
T 3etc_A 279 KCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED------------------------ 334 (580)
T ss_dssp HHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC------------------------
T ss_pred HHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc------------------------
Confidence 88776 567899999998873 79999999999999999999999998876510
Q ss_pred HHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCCc
Q 007119 386 AMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHV 465 (617)
Q Consensus 386 ~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~v 465 (617)
......++||.+++||+++++++.++|.+.+|++++++||+||++..++.........+++
T Consensus 335 -------------------~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~ 395 (580)
T 3etc_A 335 -------------------LSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSI 395 (580)
T ss_dssp -------------------C---CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTSCCCTTCC
T ss_pred -------------------cccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCCCCCCCCCcc
Confidence 0011125899999999999999999999999999999999999987766655556778999
Q ss_pred CCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeC-----ccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEE
Q 007119 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG-----PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKI 540 (617)
Q Consensus 466 G~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g-----~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i 540 (617)
|+|+++++++|+| ++++.++.|+ .|||+|+| +++++|||++|+.|++.| .+|||+|||+|++|+||+|+|
T Consensus 396 G~p~~~~~v~ivd-~~g~~~~~g~---~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~ 470 (580)
T 3etc_A 396 GKPTPGYKIELMD-RDGRLCEVGE---EGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWF 470 (580)
T ss_dssp BEECTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTCCCTTCCCEETTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEE
T ss_pred ccCCCCCEEEEEC-CCCCCCCCCC---ceEEEEecCCCCCCeeeccccCCHhHHHhhc-CCCEEecCcEEEECCCCcEEE
Confidence 9999999999999 5677787776 89999997 789999999999999999 699999999999999999999
Q ss_pred EecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH---------HHHHHHHHHcCCCCC
Q 007119 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ---------DALKAWAASEGIQSL 608 (617)
Q Consensus 541 ~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~~~~~~~~~~~~~~ 608 (617)
+||+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.+++ +.++|+|++.+ ++++++++++...++
T Consensus 471 ~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~ 549 (580)
T 3etc_A 471 VGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYK 549 (580)
T ss_dssp EEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGG
T ss_pred EecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCcc
Confidence 9999999997 7999999999999999999999999998754 47889998743 478899998876666
Q ss_pred hhhh
Q 007119 609 APSD 612 (617)
Q Consensus 609 ~~~~ 612 (617)
+|..
T Consensus 550 ~P~~ 553 (580)
T 3etc_A 550 YPRI 553 (580)
T ss_dssp CCSE
T ss_pred CCeE
Confidence 6654
No 6
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=2.6e-74 Score=632.20 Aligned_cols=471 Identities=23% Similarity=0.301 Sum_probs=396.7
Q ss_pred CCCCHHH-HHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 77 EIGTTHD-NFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 77 ~~~tl~~-~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
...|+.+ +|.++++++ |++|+.+. ++ .+++||+||.++++++|++|.+.|+++||+|+|+++|+++|++++
T Consensus 23 ~~~~l~~~~l~~~~~~~-~~~A~~~~---~~----~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 94 (548)
T 2d1s_A 23 GSAGTQLRKYMERYAKL-GAIAFTNA---VT----GVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPV 94 (548)
T ss_dssp SCHHHHHHHHHHHHHHH-TCEEEEET---TT----CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHH
T ss_pred CcCcHHHHHHHhhhccc-CCceEEEc---CC----CCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Confidence 3468999 899999999 99999752 21 146999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEee
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~ 235 (617)
+||+++|+++||+++.++.+++.+++++++++++|++....+.+......++....++.++.... .. .+..
T Consensus 95 la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~ 165 (548)
T 2d1s_A 95 IAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVD-------YR--GYQC 165 (548)
T ss_dssp HHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSC-------BT--TBCB
T ss_pred HHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCccc-------cc--cccc
Confidence 99999999999999999999999999999999999999887777665545554555666543210 00 1245
Q ss_pred HHHHHhcCccCCCCCCCCC-----C-CCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcC---cccCCCcEEEEeCCh
Q 007119 236 YSNLLSQGRSNLQPFSPPK-----P-DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG---TKFYPSDVYISYLPL 306 (617)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~-----~-~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~lPl 306 (617)
|+++...+.....+..... + +|+++|+|||||||.||||++||+++++.+...... +++.++|++++++|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 245 (548)
T 2d1s_A 166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPF 245 (548)
T ss_dssp HHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCT
T ss_pred HHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccH
Confidence 7777654321101111122 4 899999999999999999999999999988777665 678899999999999
Q ss_pred HHHHHHHHH-HHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q 007119 307 AHIYERANQ-VMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (617)
Q Consensus 307 ~h~~~~~~~-~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 384 (617)
+|.+++... +.++ .|+++++.+ +++..+++.|+++++|+++++|+++..+.+...
T Consensus 246 ~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------- 302 (548)
T 2d1s_A 246 HHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSEL---------------------- 302 (548)
T ss_dssp TSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC----------------------
T ss_pred HHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc----------------------
Confidence 999998874 4556 999999987 799999999999999999999999998865200
Q ss_pred HHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCCCCCCCCC
Q 007119 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGDNLSG 463 (617)
Q Consensus 385 ~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~~ 463 (617)
. .....++||.+++||+++++++.+++++.| +++++++||+||++..++.........+
T Consensus 303 ------------~--------~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 362 (548)
T 2d1s_A 303 ------------L--------NKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPG 362 (548)
T ss_dssp ------------G--------GGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTT
T ss_pred ------------c--------ccccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcccCCCC
Confidence 0 001125899999999999999999999998 6889999999999877666544446778
Q ss_pred CcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEec
Q 007119 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (617)
Q Consensus 464 ~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR 543 (617)
++|+|+++++++|+|+++++.++.|+ .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||
T Consensus 363 ~~G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR 439 (548)
T 2d1s_A 363 ASGKVVPLFKAKVIDLDTKKSLGPNR---RGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDR 439 (548)
T ss_dssp CCBEECTTCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEE
T ss_pred CCCccCCCceEEEEeCCcCccCCCCC---CeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEecc
Confidence 99999999999999977788888776 899999999999999999999999998899999999999999999999999
Q ss_pred CCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCCCCChhh
Q 007119 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGIQSLAPS 611 (617)
Q Consensus 544 ~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~~~~~~~~~~~~~~~~~ 611 (617)
+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.+++ +.++|+|+++ .+++.+|++++...++.|.
T Consensus 440 ~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~ 515 (548)
T 2d1s_A 440 LKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLR 515 (548)
T ss_dssp GGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGSCT
T ss_pred ccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCCHHHHHHHHHHhcccccccc
Confidence 9999997 9999999999999999999999999998754 4788999864 4789999998766566555
No 7
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1.5e-74 Score=633.18 Aligned_cols=463 Identities=21% Similarity=0.256 Sum_probs=387.6
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007119 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (617)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (617)
..|+.++|.++++++||++|+.+. + +++||+||+++++++|++|.++|+++||+|+|+++|+++|+++++|
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 469999999999999999999753 2 4699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccch-----HHHHhhccCCCCceEEEEECCCCCCCCCCCccCCce
Q 007119 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (617)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~ 232 (617)
|+++|+++||+++.++.+++.+++++++++++|++.... ..+......++.++.++..+...
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 161 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------- 161 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence 999999999999999999999999999999999987532 22233333455566566544311
Q ss_pred EeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHH
Q 007119 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (617)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~ 312 (617)
.+.++...... +.+.....++|+++|+|||||||.||||++||+++++.+......+++.++|++++.+|++|.+++
T Consensus 162 --~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 238 (539)
T 1mdb_A 162 --EFLPLEDLHTE-PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPL 238 (539)
T ss_dssp --TSEEGGGCCCC-CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHH
T ss_pred --chhhhhhcccc-ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchh
Confidence 01112111111 112334578999999999999999999999999999988877777888999999999999999998
Q ss_pred HH--HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhc
Q 007119 313 AN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (617)
Q Consensus 313 ~~--~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 389 (617)
.. .+.+++.|+++++.+ +++..+++.++++++|++.++|+++..+.+.....
T Consensus 239 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------- 293 (539)
T 1mdb_A 239 SSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR------------------------- 293 (539)
T ss_dssp HSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC-------------------------
T ss_pred hHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc-------------------------
Confidence 75 677899999999987 79999999999999999999999999987642110
Q ss_pred CCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCC-CCCCCCcCCC
Q 007119 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSP 468 (617)
Q Consensus 390 ~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p 468 (617)
....++||.+++||+++++++.+++++.+|++++++||+||++..++..... ....+++|+|
T Consensus 294 -----------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p 356 (539)
T 1mdb_A 294 -----------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKP 356 (539)
T ss_dssp -----------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEE
T ss_pred -----------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHhcCCCCCcc
Confidence 0011589999999999999999999999999999999999976433321111 1234789999
Q ss_pred CcC-eEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCe
Q 007119 469 NAA-CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547 (617)
Q Consensus 469 ~~~-~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ 547 (617)
+++ .+++|+| ++++.++.|+ .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||+||+
T Consensus 357 ~~~~~~~~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ 432 (539)
T 1mdb_A 357 MSPYDESRVWD-DHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQ 432 (539)
T ss_dssp SSTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGC
T ss_pred cCCCceEEEEC-CCCCCCcCCC---cceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccce
Confidence 975 5899999 6677777776 8999999999999999999999999988999999999999999999999999999
Q ss_pred eecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC-----HHHHHHHHHHcCC-CCChhhh
Q 007119 548 FKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD-----QDALKAWAASEGI-QSLAPSD 612 (617)
Q Consensus 548 ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-----~~~~~~~~~~~~~-~~~~~~~ 612 (617)
||+ +|++|+|.|||++|.+||+|.+|+|+|.+++ +.++|+|+++ .+++.++++++++ .+++|..
T Consensus 433 ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~l~~~~L~~~~~P~~ 505 (539)
T 1mdb_A 433 INR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIPDR 505 (539)
T ss_dssp EEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCCCHHHHHHHHHHTTCCGGGSCSE
T ss_pred EEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCCCCHHHHHHHHHhCCCCcccCCCE
Confidence 995 9999999999999999999999999998754 4788999864 5789999999744 4666653
No 8
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=4.2e-74 Score=626.33 Aligned_cols=465 Identities=19% Similarity=0.245 Sum_probs=388.6
Q ss_pred CCCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHH
Q 007119 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (617)
Q Consensus 75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 154 (617)
.+...|+.++|.++++++||++|+.+. +. .+++||+||.++++++|++|.+.|+++||+|+|+++|+++|+++
T Consensus 12 ~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~ 84 (517)
T 3r44_A 12 DDKMKNIGWMLRQRATVSPRLQAYVEP---ST----DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCL 84 (517)
T ss_dssp CGGGGCHHHHHHHHHHHSTTSEEEEEG---GG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred cccccCHHHHHHHHHHhCCCCeEEEeC---Cc----CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHH
Confidence 456789999999999999999999864 22 24699999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEe
Q 007119 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (617)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~ 234 (617)
++||+++|+++|||++.++.+++.+++++++++++|++....+.+.......+....++.+.. ..
T Consensus 85 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~ 149 (517)
T 3r44_A 85 FYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIG---------------AD 149 (517)
T ss_dssp HHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEE---------------HH
T ss_pred HHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccC---------------cc
Confidence 999999999999999999999999999999999999998887776665543332211111100 01
Q ss_pred eHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH
Q 007119 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314 (617)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~ 314 (617)
.+.+....... ..+.....++|+++|+|||||||.||||++||+++.+.+......+++.++|++++.+|++|.+++..
T Consensus 150 ~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~ 228 (517)
T 3r44_A 150 SLAERLRSAAA-DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTT 228 (517)
T ss_dssp HHHHHHHHCCC-CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHH
T ss_pred cHHHHhhccCc-CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHH
Confidence 23444432222 22344567899999999999999999999999999999988888889999999999999999999988
Q ss_pred HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCC
Q 007119 315 QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (617)
Q Consensus 315 ~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (617)
.+.++..|+++++.+ +++..+++.++++++|++.++|++++.+.+...
T Consensus 229 ~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------------- 277 (517)
T 3r44_A 229 VIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPE------------------------------- 277 (517)
T ss_dssp HHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHH-------------------------------
T ss_pred HHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc-------------------------------
Confidence 666666999999887 799999999999999999999999998876211
Q ss_pred CchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCC--CCCCCCcCCCCcC
Q 007119 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--DNLSGHVGSPNAA 471 (617)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~ 471 (617)
......++||.+++||+++++++.+.+... +++++++||+||+++.++..... ....+++|+|.++
T Consensus 278 -----------~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~ 345 (517)
T 3r44_A 278 -----------FAELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMF 345 (517)
T ss_dssp -----------HHHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTT
T ss_pred -----------cccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCCCCCcCCCC
Confidence 111122589999999999999999999987 99999999999998766554332 3567899999999
Q ss_pred eEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecC
Q 007119 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLA 551 (617)
Q Consensus 472 ~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~ 551 (617)
++++|+| +++..++.+ .|||+|+|++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||+||+||+
T Consensus 346 ~~~~i~d-~~~~~~~~g----~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~- 418 (517)
T 3r44_A 346 TDVAVRG-DDGVIREHG----EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMIIS- 418 (517)
T ss_dssp EEEEEEC-TTSCEESSE----EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEECGGGCEEE-
T ss_pred eEEEEEC-CCCCCCCCC----CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEcCCeeEEEecCCcCEEEE-
Confidence 9999999 444444433 69999999999999999999999999 7999999999999999999999999999996
Q ss_pred CeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe-----CHHHHHHHHHHcCCCCChhhh
Q 007119 552 QGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV-----DQDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 552 ~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~-----~~~~~~~~~~~~~~~~~~~~~ 612 (617)
+|++|+|.|||++|.+||+|.+++|+|.+++ +.++|+|+. ++++++++++++...+++|..
T Consensus 419 ~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~~~~~~l~~~l~~~L~~~~~P~~ 487 (517)
T 3r44_A 419 GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNEVSEQQIVEYCGTRLARYKLPKK 487 (517)
T ss_dssp TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTTCCHHHHHHHHHHHSCGGGSCSE
T ss_pred CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCCCCHHHHHHHHHHhCCCCCCCCE
Confidence 8999999999999999999999999997654 356677753 457899999998776776653
No 9
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=4.4e-74 Score=624.08 Aligned_cols=460 Identities=26% Similarity=0.342 Sum_probs=385.0
Q ss_pred HHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcC
Q 007119 83 DNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYS 162 (617)
Q Consensus 83 ~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G 162 (617)
++|.+.++++||++++... +.. -+++||+||.++++++|++|.++|+++||+|+|+++|+++|+++++||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~---~~~---~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIE---TAA---GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEE---ETT---CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEe---cCC---CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 4688999999999999864 211 1469999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHHHHHhc
Q 007119 163 FISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQ 242 (617)
Q Consensus 163 ~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (617)
+++||+++.++.+++.+++++++++++|++.+..+.+......... .++.++.... ..+.+....
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------------~~~~~~~~~ 142 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGA--TVETLGPDGR-------------GSLTDAAAG 142 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTC--EEEECCTTSC-------------SHHHHHHHT
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCc--eEEEecCCcc-------------cccchhhhc
Confidence 9999999999999999999999999999998765544443332221 2333332110 122222222
Q ss_pred CccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH-HHHHHHh
Q 007119 243 GRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-QVMTVYS 321 (617)
Q Consensus 243 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~ 321 (617)
. ....+.....++|+++|+|||||||.||||++||+++.+.+......+++.++|++++.+|++|.+++.. .+.+++.
T Consensus 143 ~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~ 221 (503)
T 4fuq_A 143 A-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFA 221 (503)
T ss_dssp S-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHT
T ss_pred C-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHh
Confidence 1 1122334567899999999999999999999999999999888888889999999999999999998765 5678999
Q ss_pred CcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchhhHH
Q 007119 322 GVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL 400 (617)
Q Consensus 322 G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~l 400 (617)
|+++++.+ +++..+++.++ ++|+++++|+++..+.+...
T Consensus 222 g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~-------------------------------------- 261 (503)
T 4fuq_A 222 RGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR-------------------------------------- 261 (503)
T ss_dssp TCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------------
T ss_pred CCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------------
Confidence 99999887 79999999998 89999999999998865210
Q ss_pred hHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCCcCCCCcCeEEEEeecC
Q 007119 401 VFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVP 480 (617)
Q Consensus 401 ~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~ 480 (617)
......+++|.+++||+++++++.+.+.+.+++++++.||+||++..++.....+...+++|+|+++++++|+|++
T Consensus 262 ----~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 337 (503)
T 4fuq_A 262 ----LTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPE 337 (503)
T ss_dssp ----CSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCSSSCCCTTEEEEBCTTCEEEEECTT
T ss_pred ----ccccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCCCCCCcCCccccCCCCeEEEEEECC
Confidence 0011125899999999999999999999999999999999999987765444445677899999999999999988
Q ss_pred CCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecCCeeeechHH
Q 007119 481 EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEK 560 (617)
Q Consensus 481 ~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~ 560 (617)
+++.++.|+ .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|
T Consensus 338 ~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~e 413 (503)
T 4fuq_A 338 TGKELPRGD---IGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT-GGFNVYPKE 413 (503)
T ss_dssp TCCBCCTTC---CEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE-TTEEECHHH
T ss_pred CCCCCcCCC---ceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE-CCEEECHHH
Confidence 888888887 9999999999999999999999999988999999999999999999999999999997 899999999
Q ss_pred HHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCCCCChhhh
Q 007119 561 IENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 561 IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~~~~~~~~~~~~~~~~~~ 612 (617)
||++|.+||+|.+++|+|.++. +.++|+|+++ .+++.++++++...+++|..
T Consensus 414 IE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~ 474 (503)
T 4fuq_A 414 IESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKMPKK 474 (503)
T ss_dssp HHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBTTBCGGGCCSE
T ss_pred HHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHhhcccCCCCCE
Confidence 9999999999999999997654 4688999864 46889999887666666653
No 10
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=3.2e-74 Score=631.20 Aligned_cols=469 Identities=18% Similarity=0.208 Sum_probs=340.0
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
...|+.++|.++++++||++|+.+. + +.+||+||.++++++|++|++.|+++||+|+|+++|+++|+++++
T Consensus 28 ~~~tl~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 98 (544)
T 3o83_A 28 IDQPLTRILTVGVQSHPHSLAIICG---E------RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFF 98 (544)
T ss_dssp CCCCTTHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEcC---C------CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH
Confidence 3478999999999999999999853 2 469999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccch-----HHHHhhccCCCCceEEEEECCCCCCCCCCCccCCc
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~ 231 (617)
||+++|++++|+++.++.+++.+++++++++++|++.... ..+.......+....++.++....
T Consensus 99 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 167 (544)
T 3o83_A 99 ALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT----------- 167 (544)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT-----------
T ss_pred HHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc-----------
Confidence 9999999999999999999999999999999999987653 333333334455566666654211
Q ss_pred eEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHH
Q 007119 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE 311 (617)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~ 311 (617)
...+.++.........+.....++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.++
T Consensus 168 -~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 246 (544)
T 3o83_A 168 -DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFM 246 (544)
T ss_dssp -SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHH
T ss_pred -ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEee
Confidence 1345555554433323334567899999999999999999999999999999988888889999999999999999999
Q ss_pred HHH--HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHh
Q 007119 312 RAN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388 (617)
Q Consensus 312 ~~~--~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 388 (617)
+.. .+.++..|+++++.+ +++..+++.++++++|++.++|+++..+.+.....
T Consensus 247 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------ 302 (544)
T 3o83_A 247 LSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQY------------------------ 302 (544)
T ss_dssp HHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTT------------------------
T ss_pred cchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhc------------------------
Confidence 875 667899999999987 79999999999999999999999999887642110
Q ss_pred cCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCC-CCCCCcCC
Q 007119 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGS 467 (617)
Q Consensus 389 ~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~ 467 (617)
....++||.+++||+++++++.+++++.++++++++||+||++..++.....+ ...+++|+
T Consensus 303 ------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~ 364 (544)
T 3o83_A 303 ------------------KDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGR 364 (544)
T ss_dssp ------------------HHHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCE
T ss_pred ------------------cccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhhccCCCce
Confidence 00014899999999999999999999999999999999999876544332221 23468999
Q ss_pred CC-cCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCC
Q 007119 468 PN-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546 (617)
Q Consensus 468 p~-~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d 546 (617)
|+ ++++++|+| ++++.++.|+ .|||+|+|++++.|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||+||
T Consensus 365 p~~~~~~~~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd 440 (544)
T 3o83_A 365 PISSDDEIKIVD-EQYREVPEGE---IGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKD 440 (544)
T ss_dssp ESCTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC-
T ss_pred ecCCCcEEEEEC-CCCCCCCCCC---eeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCC
Confidence 96 899999999 7778888886 899999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC-----HHHHHHHHHHc-CCCCChhhhh
Q 007119 547 IFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD-----QDALKAWAASE-GIQSLAPSDC 613 (617)
Q Consensus 547 ~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-----~~~~~~~~~~~-~~~~~~~~~~ 613 (617)
+||+ +|++|+|.|||++|.+||+|.+++|++.+++ +.++|+|++. .++++++++++ ...+++|..+
T Consensus 441 ~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~~~~~~l~~~~~P~~i 515 (544)
T 3o83_A 441 QINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLMELGIAQYKLPDQI 515 (544)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred EEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCCCCHHHHHHHHHhCCCCcccCCcEE
Confidence 9995 9999999999999999999999999997754 5788998864 35677888774 4446666543
No 11
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=7.4e-73 Score=622.92 Aligned_cols=470 Identities=18% Similarity=0.226 Sum_probs=399.0
Q ss_pred CCCCHHHHHHHHHHh-----cCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCHh
Q 007119 77 EIGTTHDNFVRAVDT-----FRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPE 150 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~-----~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-Gv~~gd~V~i~~~n~~e 150 (617)
..+++.++|.+.+++ +||++|+.+. ++. ++.+++||+||.++++++|++|.+. |+++||+|+|+++|+++
T Consensus 36 ~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~~-g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e 111 (570)
T 3c5e_A 36 KFNFASDVLDHWADMEKAGKRPPSPALWWV---NGK-GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPE 111 (570)
T ss_dssp BCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CSS-SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHH
T ss_pred cccHHHHHHHHHHhhccccCCCCceEEEEE---cCC-CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHH
Confidence 456778999999999 9999999875 422 2346799999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCC
Q 007119 151 WLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTG 230 (617)
Q Consensus 151 ~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~ 230 (617)
|+++++||+++|+++||+++.++.+++.+++++++++++|++.+..+.+......++.++.++.++.... .
T Consensus 112 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~- 182 (570)
T 3c5e_A 112 WWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSC--------D- 182 (570)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCC--------T-
T ss_pred HHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCc--------c-
Confidence 9999999999999999999999999999999999999999999888877776666777777777654210 0
Q ss_pred ceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHH--HHHhhhcCcccCCCcEEEEeCChHH
Q 007119 231 VQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA--SVAGATLGTKFYPSDVYISYLPLAH 308 (617)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~--~~~~~~~~~~~~~~d~~l~~lPl~h 308 (617)
....++++....... .+.....++|+++|+|||||||.||||++||+ ++. ..... ..+++.++|++++.+|++|
T Consensus 183 -~~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~ 258 (570)
T 3c5e_A 183 -GWLNFKKLLNEASTT-HHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGW 258 (570)
T ss_dssp -TSEEHHHHHHHSCSC-CCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTS
T ss_pred -ccccHHHHhhccccc-ccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHH
Confidence 134677776543321 22234678999999999999999999999999 544 34433 5678899999999999999
Q ss_pred HHHHHH-HHHHHHhCcEEEEec---CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q 007119 309 IYERAN-QVMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (617)
Q Consensus 309 ~~~~~~-~~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 384 (617)
.+++.. .+.++..|+++++.+ +++..+++.|+++++|+++++|++++.+.+.-
T Consensus 259 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----------------------- 315 (570)
T 3c5e_A 259 ILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD----------------------- 315 (570)
T ss_dssp HHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-----------------------
T ss_pred HHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-----------------------
Confidence 999875 677899999999985 69999999999999999999999999886520
Q ss_pred HHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCC
Q 007119 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGH 464 (617)
Q Consensus 385 ~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~ 464 (617)
......++||.+++||+++++++.+.+++.+|++++++||+||++..++.........++
T Consensus 316 --------------------~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~ 375 (570)
T 3c5e_A 316 --------------------LSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGY 375 (570)
T ss_dssp --------------------TTTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTC
T ss_pred --------------------ccccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCcccccCCCc
Confidence 000012589999999999999999999998999999999999998766655444567789
Q ss_pred cCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEe-----CccccccccCChhhhhcccCCCCeeeecceEEEecCCcEE
Q 007119 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVR-----GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLK 539 (617)
Q Consensus 465 vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~-----g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~ 539 (617)
+|+|+++++++|+| ++++.++.|+ .|||+|+ |++++.|||++|+.|++.| .+|||+|||+|++|+||+|+
T Consensus 376 vG~p~~~~~v~i~d-~~g~~~~~G~---~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~ 450 (570)
T 3c5e_A 376 MGTAASCYDVQIID-DKGNVLPPGT---EGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQ 450 (570)
T ss_dssp CCEECTTCCEEEEC-TTSCBCCTTC---CEEEEEECSSBCCTTCCCEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEE
T ss_pred ccccCCCceEEEEC-CCCCCCCCCC---CCeeEEeccCCCCchhhccccCChhHhhhhh-cCCccccceeEEEcCCceEE
Confidence 99999999999999 6678888776 8999999 9999999999999999999 68999999999999999999
Q ss_pred EEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH-----------HHHHHHHHHcCC
Q 007119 540 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ-----------DALKAWAASEGI 605 (617)
Q Consensus 540 i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-----------~~~~~~~~~~~~ 605 (617)
|+||+||+||+ +|++|+|.|||++|.+||+|.+++|++.+++ +.++|+|++++ +++.++++++..
T Consensus 451 ~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~ 529 (570)
T 3c5e_A 451 FMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTA 529 (570)
T ss_dssp EEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSC
T ss_pred EEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCc
Confidence 99999999996 8999999999999999999999999998654 47889998743 467888888766
Q ss_pred CCChhhh
Q 007119 606 QSLAPSD 612 (617)
Q Consensus 606 ~~~~~~~ 612 (617)
.+++|..
T Consensus 530 ~~~~P~~ 536 (570)
T 3c5e_A 530 PYKYPRK 536 (570)
T ss_dssp GGGSCSE
T ss_pred cccCCcE
Confidence 5666543
No 12
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=7.2e-73 Score=632.42 Aligned_cols=484 Identities=17% Similarity=0.253 Sum_probs=397.5
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
...++++++|.++++++||++|+.+. +...+..+.+||+||.++++++|++|+++|+++||+|+|+++|++||++++
T Consensus 73 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~ 149 (652)
T 1pg4_A 73 GTLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAM 149 (652)
T ss_dssp CEECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHH
T ss_pred CChhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34578899999999999999999875 332344578999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccch---------HHHHhhccCC--CCceEEEEECCCCCCCCC
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL---------NSLLSCLSEV--PTVRLIVVIGGIDDQIPS 224 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~l~~~~~~~--~~~~~iv~~~~~~~~~~~ 224 (617)
|||+++|++++|+++.++++++.+++++++++++|++.... +.+.+..... +.++.++.++.......
T Consensus 150 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~- 228 (652)
T 1pg4_A 150 LACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID- 228 (652)
T ss_dssp HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC-
T ss_pred HHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCccc-
Confidence 99999999999999999999999999999999999987542 2333333333 24567777754321110
Q ss_pred CCccCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHH-hhhcCcccCCCcEEEEe
Q 007119 225 LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA-GATLGTKFYPSDVYISY 303 (617)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~ 303 (617)
. .......|++++..... ..+.....++|+++|+|||||||.||||++||++++..+. .....+++.++|+++++
T Consensus 229 ~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~ 304 (652)
T 1pg4_A 229 W---QEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCT 304 (652)
T ss_dssp C---CBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEEC
T ss_pred c---cCCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEc
Confidence 0 01123578888764332 1223345689999999999999999999999999887654 33445788999999999
Q ss_pred CChHHHHHHHH-HHHHHHhCcEEEEec-----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHH
Q 007119 304 LPLAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN 377 (617)
Q Consensus 304 lPl~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~ 377 (617)
+|++|+++... .+.+|+.|+++++++ .++..+++.|+++++|+++++|++++.+.+....
T Consensus 305 ~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-------------- 370 (652)
T 1pg4_A 305 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK-------------- 370 (652)
T ss_dssp SCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG--------------
T ss_pred cCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcc--------------
Confidence 99999999854 678999999999987 3889999999999999999999999988652100
Q ss_pred HHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhC---Cceecccccccccccccc
Q 007119 378 AAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQ 454 (617)
Q Consensus 378 ~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~---~~v~~~YG~TE~~~~~~~ 454 (617)
..+....++||.+++||+++++++.+++.+.+| +++++.||+||+++.++.
T Consensus 371 --------------------------~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~ 424 (652)
T 1pg4_A 371 --------------------------AIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT 424 (652)
T ss_dssp --------------------------GTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBC
T ss_pred --------------------------ccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceec
Confidence 000111258999999999999999999999888 899999999999876665
Q ss_pred CCCC--CCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeC--ccccccccCChhhhhcccC--CCCeeeecc
Q 007119 455 LDEG--DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVID--EDGWFHTGD 528 (617)
Q Consensus 455 ~~~~--~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g--~~v~~GY~~~~~~t~~~~~--~~gw~~TGD 528 (617)
..+. ....+++|+|++|++++|+| ++++.++.|+ .|||+|+| |++++|||++|+.+.+.|. .+|||+|||
T Consensus 425 ~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~---~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGD 500 (652)
T 1pg4_A 425 PLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGAT---EGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGD 500 (652)
T ss_dssp CCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSE---EEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEE
T ss_pred CCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCc---eEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCc
Confidence 4432 35678999999999999999 5667776665 89999999 7999999999999988762 489999999
Q ss_pred eEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH---------HHH
Q 007119 529 IGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ---------DAL 596 (617)
Q Consensus 529 lg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~~ 596 (617)
+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.+++ +.++|+|++++ +++
T Consensus 501 lg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l 579 (652)
T 1pg4_A 501 GARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEV 579 (652)
T ss_dssp EEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHH
T ss_pred EEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHHH
Confidence 9999999999999999999997 8999999999999999999999999997643 47999999743 578
Q ss_pred HHHHHHcCCCCChhhh
Q 007119 597 KAWAASEGIQSLAPSD 612 (617)
Q Consensus 597 ~~~~~~~~~~~~~~~~ 612 (617)
+++++++..+++.|+.
T Consensus 580 ~~~l~~~l~~~~~P~~ 595 (652)
T 1pg4_A 580 RNWVRKEIGPLATPDV 595 (652)
T ss_dssp HHHHHHHTCGGGCCSE
T ss_pred HHHHHHhCCCCcCCeE
Confidence 8899887665665543
No 13
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=7.5e-73 Score=615.06 Aligned_cols=455 Identities=20% Similarity=0.251 Sum_probs=375.4
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007119 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (617)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (617)
++|+.++|.++++++||++|+.+. +.. +++||+||.++++++|++|++.|+++||+|+|+++|+++|+++++|
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 468999999999999999999753 211 5699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccccEEEe--cccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEee
Q 007119 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC--VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (617)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~--~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~ 235 (617)
|+++|+++||+++.++.+++.+++++++++++|+ +....+.+.... +.++ ++ .
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~-~~---------------------~ 128 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG---SGAR-II---------------------F 128 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC---CCCE-EE---------------------E
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc---ccce-eE---------------------E
Confidence 9999999999999999999999999999999999 665544441211 2222 22 2
Q ss_pred HHHHHhcCc----cCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCccc--CCCcEEEEeCChHHH
Q 007119 236 YSNLLSQGR----SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKF--YPSDVYISYLPLAHI 309 (617)
Q Consensus 236 ~~~l~~~~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~--~~~d~~l~~lPl~h~ 309 (617)
++++...+. ....+.....++|+++|+|||||||.||||++||+++.+.+......+++ .++|++++.+|++|.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 208 (504)
T 1t5h_X 129 LGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHV 208 (504)
T ss_dssp GGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSH
T ss_pred ecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhc
Confidence 222222110 11111234568999999999999999999999999999988877766777 889999999999999
Q ss_pred HHHHH-HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHH
Q 007119 310 YERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM 387 (617)
Q Consensus 310 ~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 387 (617)
+++.. .+.+++.|+++++.+ +++..+++.|+++++|+++++|++++.+.+......
T Consensus 209 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------- 266 (504)
T 1t5h_X 209 VGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG---------------------- 266 (504)
T ss_dssp HHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT----------------------
T ss_pred chHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc----------------------
Confidence 99854 677899999999987 799999999999999999999999999876310000
Q ss_pred hcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCCcCC
Q 007119 388 LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGS 467 (617)
Q Consensus 388 ~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~ 467 (617)
.....++||.+++||+++++++.+++++.+++.++++||+||++. +.... ....+++|.
T Consensus 267 ------------------~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~-~~~~~--~~~~~~~g~ 325 (504)
T 1t5h_X 267 ------------------SSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMN-SLYMR--QPKTGTEMA 325 (504)
T ss_dssp ------------------CCCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEE-EEEEE--SCSSSSEEB
T ss_pred ------------------ccccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccc-ccccc--CCCCCcccc
Confidence 000115899999999999999999999999999999999999943 22221 345688999
Q ss_pred CCcCeEEEEeecCCC--CCCCCCCCCCcceEEEe-CccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecC
Q 007119 468 PNAACEIKLVDVPEM--NYTSEDQPCPRGEICVR-GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK 544 (617)
Q Consensus 468 p~~~~~v~ivd~~~~--~~~~~~~~~~~GEl~v~-g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~ 544 (617)
|.++++++|+|.++. +.++.|+ .|||+|+ |++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||+
T Consensus 326 p~~~~~~~i~~~~~~~~~~~~~g~---~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~dG~l~~~GR~ 401 (504)
T 1t5h_X 326 PGFFSEVRIVRIGGGVDEIVANGE---EGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRV 401 (504)
T ss_dssp CCTTCCEEEECTTSCTTCBCCTTC---CEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEG
T ss_pred CCCCCceeEEeccCCCCCcCCCCC---cceEEEeCCceeeceecCCchhhhhhh-cCCccccCcEEEECCCceEEEeCcc
Confidence 999999999994432 5666665 8999999 9999999999999999999 7999999999999999999999999
Q ss_pred CCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHH-cCCCCChhhh
Q 007119 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAAS-EGIQSLAPSD 612 (617)
Q Consensus 545 ~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~~~~~~~~-~~~~~~~~~~ 612 (617)
||+||+ +|++|+|.|||++|.+||+|.+|+|+|.+++ +.++|+|+++ .+++.+|+++ +...+++|..
T Consensus 402 dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~~L~~~~~P~~ 478 (504)
T 1t5h_X 402 DDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKR 478 (504)
T ss_dssp GGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHHHHHHHHHTSSCCGGGSCSE
T ss_pred cCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHHHHHHHHhhccCcccccceE
Confidence 999996 9999999999999999999999999998764 4799999964 4789999998 5555666653
No 14
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=4.1e-72 Score=626.58 Aligned_cols=487 Identities=18% Similarity=0.213 Sum_probs=399.1
Q ss_pred CCCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHhHHH
Q 007119 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLI-YHGISKGSCIGLYFVNRPEWLI 153 (617)
Q Consensus 75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~e~~~ 153 (617)
....++++++|.++++++||++|+++. +...+..+++||+||.++++++|++|+ ++|+++||+|+|+++|++||++
T Consensus 78 ~~~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~ 154 (663)
T 1ry2_A 78 NGQLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAII 154 (663)
T ss_dssp TCEECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHH
T ss_pred CCCccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHH
Confidence 345688999999999999999999975 333344578999999999999999999 9999999999999999999999
Q ss_pred HHHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccch---------HHHHhhccCCCCceEEEEECCCCCCCCC
Q 007119 154 VDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL---------NSLLSCLSEVPTVRLIVVIGGIDDQIPS 224 (617)
Q Consensus 154 ~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~l~~~~~~~~~~~~iv~~~~~~~~~~~ 224 (617)
++|||+++|++++|+++.++.+++.++|++++++++|++.... +.+.+....++.++.+++++........
T Consensus 155 a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~ 234 (663)
T 1ry2_A 155 TLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVA 234 (663)
T ss_dssp HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCC
T ss_pred HHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccc
Confidence 9999999999999999999999999999999999999987642 2344555556667778877643210000
Q ss_pred CCccCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHh-hhcCcccCCCcEEEEe
Q 007119 225 LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG-ATLGTKFYPSDVYISY 303 (617)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~~d~~l~~ 303 (617)
. .......|.++...... ..+..+..++|+++|+|||||||.||||++||++++..... ....+++.++|+++++
T Consensus 235 ~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~ 310 (663)
T 1ry2_A 235 F---HAPRDLDWATEKKKYKT-YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTA 310 (663)
T ss_dssp C---CSSSEEEHHHHHTTSCS-CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEEC
T ss_pred c---CCCccccHHHHHhhcCC-CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEc
Confidence 0 01124578887754322 12334557899999999999999999999999998866543 3445788999999999
Q ss_pred CChHHHHHHHH-HHHHHHhCcEEEEec-----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHH
Q 007119 304 LPLAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN 377 (617)
Q Consensus 304 lPl~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~ 377 (617)
+|++|+++... .+.+|+.|+++++++ .++..+++.|+++++|+++++|++++.+.+...
T Consensus 311 ~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--------------- 375 (663)
T 1ry2_A 311 GDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD--------------- 375 (663)
T ss_dssp SCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCT---------------
T ss_pred CCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCc---------------
Confidence 99999999854 678999999999987 378999999999999999999999988754100
Q ss_pred HHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhC---Cceecccccccccccccc
Q 007119 378 AAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQ 454 (617)
Q Consensus 378 ~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~---~~v~~~YG~TE~~~~~~~ 454 (617)
.. .+....++||.+++||+++++++.+++.+.+| +++++.||+||+++.++.
T Consensus 376 --------------~~-----------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~ 430 (663)
T 1ry2_A 376 --------------SY-----------IENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVT 430 (663)
T ss_dssp --------------TS-----------SSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEE
T ss_pred --------------cc-----------cccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeec
Confidence 00 00111258999999999999999999999888 899999999999876655
Q ss_pred CCC---CCCCCCCcCCCCcCeEEEEeecCCCCCCCC-CCCCCcceEEEeC--ccccccccCChhhhhcccC--CCCeeee
Q 007119 455 LDE---GDNLSGHVGSPNAACEIKLVDVPEMNYTSE-DQPCPRGEICVRG--PLIFKGYYKDEIQTKEVID--EDGWFHT 526 (617)
Q Consensus 455 ~~~---~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~-~~~~~~GEl~v~g--~~v~~GY~~~~~~t~~~~~--~~gw~~T 526 (617)
..+ .....+++|.|++|++++|+|.++++.++. ++ .|||+|+| |+++.|||++|+.|.+.|. .+|||+|
T Consensus 431 ~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~---~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~T 507 (663)
T 1ry2_A 431 PLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHA---EGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFT 507 (663)
T ss_dssp CCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSC---EEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEE
T ss_pred cCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCc---ceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEc
Confidence 433 235678999999999999999546776665 54 89999999 5899999999999988874 3899999
Q ss_pred cceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH----------
Q 007119 527 GDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ---------- 593 (617)
Q Consensus 527 GDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------- 593 (617)
||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|+|.+++ +.++|+|++++
T Consensus 508 GDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~ 586 (663)
T 1ry2_A 508 GDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDD 586 (663)
T ss_dssp EEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC-----------
T ss_pred CCEEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccch
Confidence 999999999999999999999997 8999999999999999999999999998753 57999998642
Q ss_pred ------HHHHHHHHHcCCCCChhhh
Q 007119 594 ------DALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 594 ------~~~~~~~~~~~~~~~~~~~ 612 (617)
+++.++++++..+++.|+.
T Consensus 587 ~~~~l~~~l~~~l~~~L~~~~~P~~ 611 (663)
T 1ry2_A 587 ELQDIKKHLVFTVRKDIGPFAAPKL 611 (663)
T ss_dssp -CCSHHHHHHHHHHHHTCTTTSCSE
T ss_pred hHHHHHHHHHHHHHHhCCCCcCCeE
Confidence 4577788877665666653
No 15
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=4.5e-73 Score=625.64 Aligned_cols=449 Identities=18% Similarity=0.220 Sum_probs=319.3
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
+...++.++|+++++++||++|+.+. + +.+||+||.++++++|++|.++|+++||+|+|+++|+++|++++
T Consensus 72 ~~~~~l~~~l~~~a~~~pd~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 142 (570)
T 4gr5_A 72 PAGACVHELFEAQAARAPDAVALLHE---A------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVAL 142 (570)
T ss_dssp CCSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CccCCHHHHHHHHHHHCCCCeEEECC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 45679999999999999999999863 2 35999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEee
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~ 235 (617)
+||+++|+++||+++.++.+++.+++++++++++|++...... +.....++..+...
T Consensus 143 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~~---------------- 199 (570)
T 4gr5_A 143 LAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGR-------LTGTTTLYVEDEAA---------------- 199 (570)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTS-------SCSSEEEECCC-------------------
T ss_pred HHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhc-------ccCCcceeeecccc----------------
Confidence 9999999999999999999999999999999999998764332 22222222211100
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHH
Q 007119 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (617)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~ 315 (617)
.............++|+++|+|||||||.||||++||+++.+.+.. .....+.++|++++++|++|..+....
T Consensus 200 ------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~ 272 (570)
T 4gr5_A 200 ------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLEL 272 (570)
T ss_dssp ----------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHH
T ss_pred ------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHH
Confidence 0001112233467899999999999999999999999999877654 445678899999999999998777777
Q ss_pred HHHHHhCcEEEEec---CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCC
Q 007119 316 VMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (617)
Q Consensus 316 ~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (617)
+.+++.|+++++.+ .++..+++.|+++++|++.++|++++.+.+....
T Consensus 273 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----------------------------- 323 (570)
T 4gr5_A 273 FGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE----------------------------- 323 (570)
T ss_dssp HHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG-----------------------------
T ss_pred HHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh-----------------------------
Confidence 88999999999976 6899999999999999999999999988763110
Q ss_pred CCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCCCC----CCCCCCcCC
Q 007119 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG----DNLSGHVGS 467 (617)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~----~~~~~~vG~ 467 (617)
..++||.+++||+++++++.+.+.+.+ +++++++||+||+++.++..... .....++|+
T Consensus 324 ----------------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~ 387 (570)
T 4gr5_A 324 ----------------AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGV 387 (570)
T ss_dssp ----------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBE
T ss_pred ----------------hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccce
Confidence 014899999999999999999888877 78999999999998766543221 234567999
Q ss_pred CCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCC--------CeeeecceEEEecCCcEE
Q 007119 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED--------GWFHTGDIGMWIPGGRLK 539 (617)
Q Consensus 468 p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~--------gw~~TGDlg~~~~dG~l~ 539 (617)
|+++++++|+| +++..++.|+ .|||+|+|+++++|||++|+.|++.|..+ |||+|||+|++|+||+|+
T Consensus 388 p~~~~~v~i~d-~~~~~~~~G~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~ 463 (570)
T 4gr5_A 388 PLAGKRAYVLD-DDLKPAANGA---LGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLE 463 (570)
T ss_dssp ECTTEEEEEEC-TTSCBCCTTC---EEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEE
T ss_pred eeCCCEEEEEC-CCCCCCCCCC---cEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEE
Confidence 99999999999 6677788776 99999999999999999999999998543 799999999999999999
Q ss_pred EEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC-------HHHHHHHHHHcCCCCCh
Q 007119 540 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD-------QDALKAWAASEGIQSLA 609 (617)
Q Consensus 540 i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-------~~~~~~~~~~~~~~~~~ 609 (617)
|+||+||+||+ +|++|+|.|||++|.+||+|.+++|+|.+++ +.++|+|++. .++++++++++...+++
T Consensus 464 ~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~l~~~l~~~l~~~~~ 542 (570)
T 4gr5_A 464 YVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAELRRHVAEALPAYMV 542 (570)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred EEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCcCHHHHHHHHHhhCccccC
Confidence 99999999997 9999999999999999999999999997643 5788988863 35788899887666777
Q ss_pred hhhh
Q 007119 610 PSDC 613 (617)
Q Consensus 610 ~~~~ 613 (617)
|..+
T Consensus 543 P~~i 546 (570)
T 4gr5_A 543 PVEC 546 (570)
T ss_dssp ----
T ss_pred CcEE
Confidence 7543
No 16
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=3.1e-72 Score=617.06 Aligned_cols=448 Identities=19% Similarity=0.258 Sum_probs=374.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
+...|+.++|.+.++++||++|+.+. + +++||+||.++++++|++|.+.|+++||+|+|+++|+++|++++
T Consensus 36 ~~~~~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 106 (563)
T 1amu_A 36 PRDKTIHQLFEEQVSKRPNNVAIVCE---N------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI 106 (563)
T ss_dssp CTTCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHCCCCeEEEeC---C------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34579999999999999999999753 2 46999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEee
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~ 235 (617)
+||+++|+++||+++.++.+++.+++++++++++|++......+.... ....++.++...
T Consensus 107 lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~----~~~~~~~~~~~~---------------- 166 (563)
T 1amu_A 107 LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ----FNGQVEIFEEDT---------------- 166 (563)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC----CCSEEEECCCST----------------
T ss_pred HHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc----ccCceeeecchh----------------
Confidence 999999999999999999999999999999999999987655443221 111233222110
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHH
Q 007119 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (617)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~ 315 (617)
+ ... .......+..++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++...
T Consensus 167 ---~-~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~ 241 (563)
T 1amu_A 167 ---I-KIR-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEM 241 (563)
T ss_dssp ---T-TTS-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHH
T ss_pred ---h-ccc-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHH
Confidence 0 000 00112234568899999999999999999999999999888877777889999999999999999998878
Q ss_pred HHHHHhCcEEEEec----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCC
Q 007119 316 VMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (617)
Q Consensus 316 ~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (617)
+.+++.|+++++.+ .++..+++.++++++|++.++|+++..+...
T Consensus 242 ~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------------------- 290 (563)
T 1amu_A 242 FMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------------------------------- 290 (563)
T ss_dssp HHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT-------------------------------
T ss_pred HHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc-------------------------------
Confidence 88999999999876 5899999999999999999999988755320
Q ss_pred CCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCC---CCCCCcCCC
Q 007119 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD---NLSGHVGSP 468 (617)
Q Consensus 392 ~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~---~~~~~vG~p 468 (617)
...++|.+++||+++++++.+.+++. ++++++||+||++..++...... ...+++|+|
T Consensus 291 -----------------~~~~lr~~~~gG~~l~~~~~~~~~~~--~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p 351 (563)
T 1amu_A 291 -----------------RILSIQTLITAGSATSPSLVNKWKEK--VTYINAYGPTETTICATTWVATKETIGHSVPIGAP 351 (563)
T ss_dssp -----------------TCCSCSEEEEESSCCCHHHHHHHTTT--SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEE
T ss_pred -----------------ccccccEEEEEEecCCHHHHHHHHhC--CeEEEEECcCHHhHhheeeecccccCCCCCcccce
Confidence 01489999999999999999999774 78999999999987665433222 355789999
Q ss_pred CcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCC------CCeeeecceEEEecCCcEEEEe
Q 007119 469 NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE------DGWFHTGDIGMWIPGGRLKIID 542 (617)
Q Consensus 469 ~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~------~gw~~TGDlg~~~~dG~l~i~g 542 (617)
+++++++|+| ++++.++.|+ .|||+|+|+++++|||++|+.|++.|.. +|||+|||+|++|+||+|+|+|
T Consensus 352 ~~~~~v~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~G 427 (563)
T 1amu_A 352 IQNTQIYIVD-ENLQLKSVGE---AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLG 427 (563)
T ss_dssp CTTEEEEEEC-TTSCBCCTTC---EEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEE
T ss_pred eCCCEEEEEC-CCcCCCCCCC---cEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEec
Confidence 9999999999 6677777776 8999999999999999999999999843 4699999999999999999999
Q ss_pred cCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe----CHHHHHHHHHHcCCCCChhhh
Q 007119 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV----DQDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 543 R~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~----~~~~~~~~~~~~~~~~~~~~~ 612 (617)
|+||+||+ +|++|+|.|||++|.+||+|.+++|++.++. +.++|+|++ +.+++++|++++...+++|..
T Consensus 428 R~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~l~~~l~~~L~~y~~P~~ 503 (563)
T 1amu_A 428 RIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQLRQFSSEELPTYMIPSY 503 (563)
T ss_dssp EGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCCCHHHHHHHHHHHSCGGGSCSE
T ss_pred cccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCCCHHHHHHHHHhhCchhhCCcE
Confidence 99999997 9999999999999999999999999998754 478899986 457899999988766666653
No 17
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.2e-72 Score=614.50 Aligned_cols=459 Identities=21% Similarity=0.275 Sum_probs=331.2
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
...|+.++|.++++++||++|+.+. + +++||+||.++++++|++|++.|+++||+|+|+++|+++|+++++
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 74 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVD---G------VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG 74 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHCCCceEEEEC---C------cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 3479999999999999999999863 2 469999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeH
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~ 236 (617)
||+++|+++|||++.++.+++.+++++++++++|++.+....+......++.++.++.++.... .+
T Consensus 75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~ 140 (509)
T 3ivr_A 75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSG--------------PF 140 (509)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCS--------------SC
T ss_pred HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCc--------------Ch
Confidence 9999999999999999999999999999999999999888776666666777777777654211 11
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHH
Q 007119 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (617)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~ 316 (617)
.++.........+.....++|+++|+|||||||.||||++||+++++.+.+....+++.++|++++.+|++|.+++...+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~ 220 (509)
T 3ivr_A 141 APFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLML 220 (509)
T ss_dssp EEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHH
T ss_pred hhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHH
Confidence 22222111222334456789999999999999999999999999999998888888999999999999999999998877
Q ss_pred HHHHhCcEE-EEecCChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCc
Q 007119 317 MTVYSGVAV-GFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395 (617)
Q Consensus 317 ~~l~~G~~~-~~~~~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 395 (617)
.++..|++. ++..+++..+++.++++++|++.++|+++..+++...
T Consensus 221 ~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--------------------------------- 267 (509)
T 3ivr_A 221 TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA--------------------------------- 267 (509)
T ss_dssp HHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC---------------------------------
T ss_pred HHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc---------------------------------
Confidence 655555444 4444899999999999999999999999999876310
Q ss_pred hhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCCCCCCCCCCcCCCCcCeEE
Q 007119 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEI 474 (617)
Q Consensus 396 ~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v 474 (617)
....+++|.++.||++ ++.+.+.+.+ ++++++.||+||++++++..... ....++|+|++++++
T Consensus 268 -----------~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~-~~~~~~G~p~~~~~~ 332 (509)
T 3ivr_A 268 -----------PAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYR-DRPKSAGRPLFWRTV 332 (509)
T ss_dssp -----------GGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGG-GSTTSCCEECTTCEE
T ss_pred -----------ccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccc-cCCCcccccCCCcEE
Confidence 0011489999999988 8888888888 89999999999999876654332 234569999999999
Q ss_pred EEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecC--CCeeecCC
Q 007119 475 KLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK--KNIFKLAQ 552 (617)
Q Consensus 475 ~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~--~d~ikl~~ 552 (617)
+|+| ++++.++.|+ .|||+|+|++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||+ ||+||+ +
T Consensus 333 ~i~d-~~~~~~~~g~---~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~-~ 406 (509)
T 3ivr_A 333 AVVD-AEDRPLPPGE---VGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKT-G 406 (509)
T ss_dssp EEEC-TTSCBCCTTC---CEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEEEEEECTTSCEEEEEEC----------
T ss_pred EEEC-CCCCCCCCCC---ceEEEEecCCccccccCCHHHhHHHh-hcCCcccccEEEECCCceEEEeCCCCcceeEEE-C
Confidence 9999 5677777776 89999999999999999999999999 5999999999999999999999999 999996 9
Q ss_pred eeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCCCCChhhh
Q 007119 553 GEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 553 G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~~~~~~~~~~~~~~~~~~ 612 (617)
|++|+|.+||++|.+||+|.+++|+|.++. +.++|+|++. .++++++++++...+++|..
T Consensus 407 G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~ 475 (509)
T 3ivr_A 407 GENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASLIARYKKPKH 475 (509)
T ss_dssp ---------------------------------------------------------------------
T ss_pred CEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHHHHHhhCcccCCCcE
Confidence 999999999999999999999999998754 4688888864 35788888887666776654
No 18
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=7.9e-72 Score=610.87 Aligned_cols=469 Identities=20% Similarity=0.263 Sum_probs=381.6
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
.++++.++|+++++ +||++|+.+. + +.+||+||.++++++|++|++.|+++||+|+|+++|+++|+++++
T Consensus 22 ~~~~~~~~l~~~~~-~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 91 (529)
T 2v7b_A 22 LFNFAAYLFRLNET-RAGKTAYIDD---T------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFL 91 (529)
T ss_dssp CCCHHHHHHHHTGG-GTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHH
T ss_pred ceeHHHHHHHhhhc-cCCceEEEeC---C------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 45569999999999 9999999743 2 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCc-eEEEEECCCCCCCCCCCccCCceEee
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTV-RLIVVIGGIDDQIPSLPITTGVQILT 235 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~-~~iv~~~~~~~~~~~~~~~~~~~~~~ 235 (617)
||+++|+++||+++.++.+++.+++++++++++|++....+.+.......+.+ ..++.++.... .......
T Consensus 92 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 163 (529)
T 2v7b_A 92 GALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRES--------EPRLAPL 163 (529)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC--------------CCCB
T ss_pred HHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEeccccc--------ccccccc
Confidence 99999999999999999999999999999999999988777666554444444 45555543211 0011235
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHH-HHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH
Q 007119 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL-IASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314 (617)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l-~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~ 314 (617)
++++...... ..+.....++|+++|+|||||||.||||++||+++ ..........+++.++|++++.+|++|.+++..
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~ 242 (529)
T 2v7b_A 164 FEELIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGN 242 (529)
T ss_dssp HHHHHHTSCC-CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHH
T ss_pred hhhhhccCCC-cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHH
Confidence 6776653322 12233467899999999999999999999999999 666665555678899999999999999999876
Q ss_pred -HHHHHHhCcEEEEec--CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCC
Q 007119 315 -QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (617)
Q Consensus 315 -~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (617)
.+.+++.|+++++.+ +++..+++.++++++|+++++|+++..+....
T Consensus 243 ~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------------------------------ 292 (529)
T 2v7b_A 243 GLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSP------------------------------ 292 (529)
T ss_dssp HTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCT------------------------------
T ss_pred HHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCc------------------------------
Confidence 456899999999873 79999999999999999999999998876410
Q ss_pred CCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCCcCCCCcC
Q 007119 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAA 471 (617)
Q Consensus 392 ~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~ 471 (617)
.... ....++|.+++||+++++++.+++++.+|++++++||+||++.+++.....+...+++|+|+++
T Consensus 293 ~~~~------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~ 360 (529)
T 2v7b_A 293 NLPA------------RADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPG 360 (529)
T ss_dssp TCCC------------GGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTCCCTTSCCEECTT
T ss_pred cccc------------ccCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCCCccCCcccCCCC
Confidence 0000 0003799999999999999999999999999999999999976665555555677899999999
Q ss_pred eEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecC
Q 007119 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLA 551 (617)
Q Consensus 472 ~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~ 551 (617)
++++|+| ++++.++.|+ .|||+|+|++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||+||+||+
T Consensus 361 ~~~~i~d-~~g~~~~~g~---~GEl~v~g~~~~~gY~~~~~~t~~~f-~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~- 434 (529)
T 2v7b_A 361 YEIELRD-EAGHAVPDGE---VGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSGDKYCRLPNGCYVYAGRSDDMLKV- 434 (529)
T ss_dssp CEEEEEC-TTSCBCCTTS---CEEEEEECTTCCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCBC--
T ss_pred CEEEEEC-CCCCCCCCCC---ccEEEEecCCcccccCCChHHHHHhh-hcCCcccCceEEECCCccEEEeCccCCeEEE-
Confidence 9999999 6678888776 89999999999999999999999999 5899999999999999999999999999997
Q ss_pred CeeeechHHHHHHHhcCCCcceEEEEeeCC--CCeEEEEEEeCH---------HHHHHHHHHcCCCCChhhh
Q 007119 552 QGEYIAAEKIENVYAKCKFVGQCFVYGDSF--NSALVAIVSVDQ---------DALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 552 ~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~--~~~~va~vv~~~---------~~~~~~~~~~~~~~~~~~~ 612 (617)
+|++|+|.|||++|.+||+|.+++|++... .+.++|+|++.+ ++++++++++...+++|..
T Consensus 435 ~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~ 506 (529)
T 2v7b_A 435 SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRD 506 (529)
T ss_dssp ---CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSCSE
T ss_pred CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCCeE
Confidence 899999999999999999999999999732 247889998632 4588899877666666653
No 19
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=6.6e-72 Score=609.00 Aligned_cols=451 Identities=19% Similarity=0.231 Sum_probs=375.7
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007119 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (617)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (617)
.|+.++|+++++++||++|+.+. + +++||+||.++++++|++|.+.|+++||+|+|+++|++||+++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 47899999999999999999864 3 35999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHHH
Q 007119 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (617)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (617)
+++|+++||+++.++.+++.+++++++++++|++...... ..+ . .++. ...+.+
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~------~~~-~-~~~~------------------~~~~~~ 125 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVT------DLP-V-RIVS------------------EDNLKD 125 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS------CCS-S-EEEE------------------THHHHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccc------ccc-c-ceec------------------hhhhhh
Confidence 9999999999999999999999999999999997543110 000 0 0110 011222
Q ss_pred HHhcCc-cCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHH
Q 007119 239 LLSQGR-SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (617)
Q Consensus 239 l~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~ 317 (617)
+..... ..+.+.....++|+++|+|||||||.||||++||+++++.+......+++.++|++++++|++|.+++...+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 205 (512)
T 3fce_A 126 IFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYP 205 (512)
T ss_dssp HHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHH
T ss_pred hcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHH
Confidence 222111 1122234567899999999999999999999999999999888887889999999999999999999888888
Q ss_pred HHHhCcEEEEec----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCC
Q 007119 318 TVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (617)
Q Consensus 318 ~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (617)
+++.|+++++.+ .++..+++.++++++|++.++|+++..+....
T Consensus 206 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------------------------------- 253 (512)
T 3fce_A 206 SLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEA-------------------------------- 253 (512)
T ss_dssp HHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTST--------------------------------
T ss_pred HHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhc--------------------------------
Confidence 999999999987 58999999999999999999999998775410
Q ss_pred CchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCCCCC-----CCCCCcCC
Q 007119 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD-----NLSGHVGS 467 (617)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~-----~~~~~vG~ 467 (617)
.......+++|.+++||+++++++.+.+.+.| +++++++||+||+++.++...... ....++|.
T Consensus 254 ----------~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~ 323 (512)
T 3fce_A 254 ----------SFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGY 323 (512)
T ss_dssp ----------TCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEE
T ss_pred ----------cccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCcccc
Confidence 00111225899999999999999999999998 889999999999987665433221 35678999
Q ss_pred CCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhccc---CCCCeeeecceEEEecCCcEEEEecC
Q 007119 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI---DEDGWFHTGDIGMWIPGGRLKIIDRK 544 (617)
Q Consensus 468 p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~---~~~gw~~TGDlg~~~~dG~l~i~gR~ 544 (617)
|.++++++|+| +++..++.|+ .|||+|+||+++.|||++|+.|++.| +.+|||+|||+|++ +||+|+|+||+
T Consensus 324 ~~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~ 398 (512)
T 3fce_A 324 CKSDCRLLIMK-EDGTIAPDGE---KGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRL 398 (512)
T ss_dssp ECTTCEEEEEC-SSSCBCCTTS---CEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEG
T ss_pred ccCCcEEEEEC-CCCCCCCCCC---eEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEeccc
Confidence 99999999999 6777777776 89999999999999999999999998 45779999999999 79999999999
Q ss_pred CCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH----------HHHHHHHHHcCCCCChhh
Q 007119 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ----------DALKAWAASEGIQSLAPS 611 (617)
Q Consensus 545 ~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~----------~~~~~~~~~~~~~~~~~~ 611 (617)
||+||+ +|++|+|.+||++|.+||+|.+++|++.+++ +.++|+|++++ ++++++++++...+++|.
T Consensus 399 ~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~ 477 (512)
T 3fce_A 399 DFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPR 477 (512)
T ss_dssp GGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCS
T ss_pred CCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcCCe
Confidence 999997 9999999999999999999999999987644 46899999853 368888888765566664
Q ss_pred h
Q 007119 612 D 612 (617)
Q Consensus 612 ~ 612 (617)
.
T Consensus 478 ~ 478 (512)
T 3fce_A 478 K 478 (512)
T ss_dssp E
T ss_pred E
Confidence 3
No 20
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=3e-71 Score=603.52 Aligned_cols=450 Identities=18% Similarity=0.209 Sum_probs=382.2
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCHhHHHHHHH
Q 007119 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVDHA 157 (617)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-Gv~~gd~V~i~~~n~~e~~~~~lA 157 (617)
.|+.++|+++++++||++|+.+. + +++||+||.++++++|++|.+. |.++|++|+|+++|+++|+++++|
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ---G------QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 47899999999999999999753 2 4699999999999999999885 888999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHH
Q 007119 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (617)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~ 237 (617)
|+++|++++|+++.++.+++.+++++++++++|++...... .. ........++
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~~---------------------~~~~~~~~~~ 124 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSID------AV---------------------GQQIQTVSAE 124 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------CC---------------------CCSSCEEEHH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccch------hc---------------------ccccceecHh
Confidence 99999999999999999999999999999999997543110 00 0112345677
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHH
Q 007119 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (617)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~ 317 (617)
++...............++|+++|+|||||||.||||++||+++.+.+.+....+++.++|++++++|++|.+++...+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 204 (511)
T 3e7w_A 125 ELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYP 204 (511)
T ss_dssp HHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHH
T ss_pred hhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHH
Confidence 77654433323334467899999999999999999999999999999988877788999999999999999999888888
Q ss_pred HHHhCcEEEEec----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCC
Q 007119 318 TVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (617)
Q Consensus 318 ~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (617)
+++.|+++++.+ .++..+++.++++++|++.++|+++..+....
T Consensus 205 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------------------------------- 252 (511)
T 3e7w_A 205 CLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDP-------------------------------- 252 (511)
T ss_dssp HHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTST--------------------------------
T ss_pred HHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcc--------------------------------
Confidence 999999999986 58999999999999999999999998876420
Q ss_pred CchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCCCC-----CCCCCCcCC
Q 007119 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG-----DNLSGHVGS 467 (617)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~-----~~~~~~vG~ 467 (617)
.......+++|.+++||+++++++.+.+.+.| +++++++||+||+++.++..... .....++|.
T Consensus 253 ----------~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~ 322 (511)
T 3e7w_A 253 ----------GFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGF 322 (511)
T ss_dssp ----------TCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBE
T ss_pred ----------ccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcc
Confidence 00011225899999999999999999999998 89999999999998766543221 235568999
Q ss_pred CCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccC-CCC--eeeecceEEEecCCcEEEEecC
Q 007119 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID-EDG--WFHTGDIGMWIPGGRLKIIDRK 544 (617)
Q Consensus 468 p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~-~~g--w~~TGDlg~~~~dG~l~i~gR~ 544 (617)
|+++++++|+| ++++.++.|+ .|||+|+|+++++|||++|+.|++.|. .+| ||+|||+|++ +||+|+|+||+
T Consensus 323 ~~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~ 397 (511)
T 3e7w_A 323 AKPDMNIFIMD-EEGQPLPEGE---KGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRL 397 (511)
T ss_dssp ECTTCEEEEEC-TTSCBCCTTC---CEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEES
T ss_pred eeCCCEEEEEC-CCCCCCCCCC---ceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccc
Confidence 99999999999 5677888776 899999999999999999999999983 233 7999999999 59999999999
Q ss_pred CCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH----------HHHHHHHHHcCCCCChhh
Q 007119 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ----------DALKAWAASEGIQSLAPS 611 (617)
Q Consensus 545 ~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~----------~~~~~~~~~~~~~~~~~~ 611 (617)
||+||+ +|++|+|.|||++|.+||+|.+++|+|.+++ +.++|+|++++ ++++++++++...+++|.
T Consensus 398 ~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~ 476 (511)
T 3e7w_A 398 DFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPR 476 (511)
T ss_dssp SSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCS
T ss_pred cCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCCe
Confidence 999997 9999999999999999999999999997643 57999999753 468888988766666664
Q ss_pred h
Q 007119 612 D 612 (617)
Q Consensus 612 ~ 612 (617)
.
T Consensus 477 ~ 477 (511)
T 3e7w_A 477 K 477 (511)
T ss_dssp E
T ss_pred e
Confidence 3
No 21
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.2e-71 Score=617.50 Aligned_cols=447 Identities=17% Similarity=0.137 Sum_probs=371.8
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
....|+.++|++.++++||++|+.+. + +.+||+||.++++++|++|++.|+++||+|+|+++|+++|++++
T Consensus 24 ~~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~ 94 (620)
T 4dg8_A 24 YAHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCL 94 (620)
T ss_dssp GGSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34679999999999999999999864 3 35999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEee
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~ 235 (617)
+||+++|+++|||++.++.+++.++++++++++++++....... ..... ..
T Consensus 95 lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~-------~~~~~----------------------~~ 145 (620)
T 4dg8_A 95 LAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA-------NGLPC----------------------VP 145 (620)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC-------TTSCE----------------------EE
T ss_pred HHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc-------cCCce----------------------ee
Confidence 99999999999999999999999999999999999765432110 01110 11
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHH
Q 007119 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (617)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~ 315 (617)
+.... ............++|+++|+|||||||.||||+++|+++.+.+.. ...+.+.++|++++++|++|.+++...
T Consensus 146 ~~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~ 222 (620)
T 4dg8_A 146 VRHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEI 222 (620)
T ss_dssp GGGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHH
T ss_pred eccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHH
Confidence 11100 001111223456899999999999999999999999999887765 445778999999999999999999888
Q ss_pred HHHHHhCcEEEEec---CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCC
Q 007119 316 VMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (617)
Q Consensus 316 ~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (617)
+.+++.|+++++.+ .++..+++.++++++|++.++|++++.+.+..
T Consensus 223 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~------------------------------- 271 (620)
T 4dg8_A 223 WGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD------------------------------- 271 (620)
T ss_dssp HHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC-------------------------------
T ss_pred HHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC-------------------------------
Confidence 89999999999864 68999999999999999999999999886520
Q ss_pred CCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCCCC----CCCCCCcCC
Q 007119 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG----DNLSGHVGS 467 (617)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~----~~~~~~vG~ 467 (617)
....++||.+++||++++++..+.+...+ +++++|+||+||++..++..... .....++|+
T Consensus 272 --------------~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~ 337 (620)
T 4dg8_A 272 --------------PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGK 337 (620)
T ss_dssp --------------GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBE
T ss_pred --------------hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCcee
Confidence 00114899999999999988888777665 78999999999998766543221 245678999
Q ss_pred CCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCC-------CeeeecceEEEecCCcEEE
Q 007119 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED-------GWFHTGDIGMWIPGGRLKI 540 (617)
Q Consensus 468 p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~-------gw~~TGDlg~~~~dG~l~i 540 (617)
|+++++++|+|.+....++.|. .|||||+|+++++|||++|+.|++.|..+ +||+|||+|++++||+|+|
T Consensus 338 p~~~~~~~i~d~~~~~~~~~g~---~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~ 414 (620)
T 4dg8_A 338 AIAGTAVLLLDEHGQEIAEPDR---AGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRF 414 (620)
T ss_dssp ECTTEEEEEECTTSCBCCSSSC---CEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEE
T ss_pred cccCcEEEEECccCCCCCCCCC---ceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEE
Confidence 9999999999944333356665 89999999999999999999999999543 7999999999999999999
Q ss_pred EecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC--CeEEEEEEeCHHHHHHHHHHcCCCCChhhh
Q 007119 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN--SALVAIVSVDQDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 541 ~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~--~~~va~vv~~~~~~~~~~~~~~~~~~~~~~ 612 (617)
+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++. ..++++++.+.+.+.++++++...+++|..
T Consensus 415 ~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~~~~~~~l~~~Lp~y~~P~~ 487 (620)
T 4dg8_A 415 IGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADASPQALLRQLPTWQRPHA 487 (620)
T ss_dssp EECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECTTCCCHHHHHHSCGGGSCSE
T ss_pred EccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecChHHHHHHHHHhChhhcCCcE
Confidence 9999999998 8999999999999999999999999987654 467777777777777888877666666653
No 22
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=1.3e-70 Score=611.34 Aligned_cols=466 Identities=20% Similarity=0.248 Sum_probs=391.6
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
...|+.++|.++++ ||++|+.+. + +.+||+||.++++++|++|++.|+++||+|+|+++|+++|+++++
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l 93 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF 93 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcCCHHHHHHHhhC--CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 45789999999887 999999853 2 459999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccch-----HHHHhhccCCCCceEEEEECCCCCCCCCCCccCCc
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~ 231 (617)
||+++|+++||+++.++.+++.++++++++++++++.... ..+.......+.++.+...+....
T Consensus 94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 162 (617)
T 3rg2_A 94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE----------- 162 (617)
T ss_dssp HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-----------
T ss_pred HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-----------
Confidence 9999999999999999999999999999999999987654 223333334455666665544211
Q ss_pred eEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHH
Q 007119 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE 311 (617)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~ 311 (617)
..+.+....... .....+..++|+++|+|||||||.||||+++|+++++.+......+++.++|++++++|++|.++
T Consensus 163 --~~~~~~~~~~~~-~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 239 (617)
T 3rg2_A 163 --HNLQDAINHPAE-DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYA 239 (617)
T ss_dssp --TBHHHHHHSCCS-SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHH
T ss_pred --cchhhhhccccc-ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhh
Confidence 234444443322 12334567899999999999999999999999999999988888888999999999999999999
Q ss_pred HHH--HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHh
Q 007119 312 RAN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388 (617)
Q Consensus 312 ~~~--~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 388 (617)
+.. .+.+++.|+++++.+ .++..+++.++++++|++.++|+++..+.+.......
T Consensus 240 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---------------------- 297 (617)
T 3rg2_A 240 MSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGES---------------------- 297 (617)
T ss_dssp HHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCC----------------------
T ss_pred hhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccc----------------------
Confidence 875 677899999999987 7899999999999999999999999988764321100
Q ss_pred cCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCC-CCCCCcCC
Q 007119 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGS 467 (617)
Q Consensus 389 ~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~ 467 (617)
....++||.+++||+++++++.+++.+.+++++++.||+||++..++...... ....++|.
T Consensus 298 ------------------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~ 359 (617)
T 3rg2_A 298 ------------------RAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGY 359 (617)
T ss_dssp ------------------TTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHHHHHCCCE
T ss_pred ------------------cccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccccccCCCc
Confidence 00114899999999999999999999999999999999999986554332211 23457899
Q ss_pred CC-cCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCC
Q 007119 468 PN-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546 (617)
Q Consensus 468 p~-~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d 546 (617)
|+ ++++++|+| ++++.++.|. .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++++||+|+|+||+||
T Consensus 360 p~~~~~~~~i~d-~~~~~~p~G~---~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd 435 (617)
T 3rg2_A 360 PMCPDDEVWVAD-AEGNPLPQGE---VGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKD 435 (617)
T ss_dssp ESCTTCEEEEEC-TTSCBCCTTC---CEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSS
T ss_pred cCCCCceEEEEC-CCCCCCCCCC---ceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCC
Confidence 97 788999999 6778888887 899999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe----CHHHHHHHHHHcCC-CCChhhh
Q 007119 547 IFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV----DQDALKAWAASEGI-QSLAPSD 612 (617)
Q Consensus 547 ~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~----~~~~~~~~~~~~~~-~~~~~~~ 612 (617)
+||+ +|++|+|.|||++|.+||+|.+++|++.+++ +.++|+|++ +.++++++++++.+ .+++|..
T Consensus 436 ~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~l~~~l~~~~lp~~~vP~~ 508 (617)
T 3rg2_A 436 QINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLREQGIAEFKLPDR 508 (617)
T ss_dssp EEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCCHHHHHHHHHTTTCCGGGSCSE
T ss_pred EEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCCCHHHHHHHHHhCCCccccCCcE
Confidence 9997 8999999999999999999999999987643 578899886 45789999998544 4666653
No 23
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=2.8e-71 Score=605.56 Aligned_cols=450 Identities=19% Similarity=0.218 Sum_probs=370.8
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007119 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (617)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (617)
+.|+.++|++.++++||++|+.+. + +++||+||.++++++|++|.+.|+++||+|+|+++|+++|+++++|
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 73 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA 73 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 578999999999999999999753 2 4599999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHH
Q 007119 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (617)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~ 237 (617)
|+++|+++||+++.++.+++.+++++++++++|++.+....+ .+.....+.
T Consensus 74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~-----------------------------~~~~~~~~~ 124 (521)
T 3l8c_A 74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI-----------------------------EGISLVSLS 124 (521)
T ss_dssp HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC-----------------------------TTSEEEEHH
T ss_pred HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccc-----------------------------ccCcccchh
Confidence 999999999999999999999999999999999986542111 112234444
Q ss_pred HHHhcCc--cCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcC--cccCCCcEEEEeCChHHHHHHH
Q 007119 238 NLLSQGR--SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG--TKFYPSDVYISYLPLAHIYERA 313 (617)
Q Consensus 238 ~l~~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~d~~l~~lPl~h~~~~~ 313 (617)
++..... ..........++|+++|+|||||||.||||++||+++++.+.+.... +.+..++++++.+|++|.+++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 204 (521)
T 3l8c_A 125 EIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVM 204 (521)
T ss_dssp HHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHH
T ss_pred hhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHH
Confidence 4432211 11122345678999999999999999999999999999887766554 6778999999999999999988
Q ss_pred HHHHHHHhCcEEEEec----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhc
Q 007119 314 NQVMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (617)
Q Consensus 314 ~~~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 389 (617)
..+.++..|+++++.+ .++..+++.+.++++|++.++|+++..+....
T Consensus 205 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---------------------------- 256 (521)
T 3l8c_A 205 YWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSD---------------------------- 256 (521)
T ss_dssp HHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTST----------------------------
T ss_pred HHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhh----------------------------
Confidence 8888999999999876 38999999999999999999999998765410
Q ss_pred CCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCCCC-----CCCCC
Q 007119 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG-----DNLSG 463 (617)
Q Consensus 390 ~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~-----~~~~~ 463 (617)
.......+++|.+++||+++++++.+.+.+.+ +++++++||+||+++.++..... ....+
T Consensus 257 --------------~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~ 322 (521)
T 3l8c_A 257 --------------DFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRL 322 (521)
T ss_dssp --------------TCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSC
T ss_pred --------------ccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCcc
Confidence 00001125899999999999999999999988 89999999999998766543221 13567
Q ss_pred CcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhccc---CCCCeeeecceEEEecCCcEEE
Q 007119 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI---DEDGWFHTGDIGMWIPGGRLKI 540 (617)
Q Consensus 464 ~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~---~~~gw~~TGDlg~~~~dG~l~i 540 (617)
++|+|+++++++|+| +++..++.|+ .|||+|+||+++.|||++|+.|++.| +.+|||+|||+|++|+||+|+|
T Consensus 323 ~vG~p~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~ 398 (521)
T 3l8c_A 323 PIGYPKPDSPTYIID-EDGKELSSGE---QGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLY 398 (521)
T ss_dssp EEEEECTTSCEEEEC-TTSCBCCTTC---CEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEE
T ss_pred ccccccCCCEEEEEC-CCcCCCCCCC---ceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEE
Confidence 899999999999999 6677777776 89999999999999999999999998 5678999999999999999999
Q ss_pred EecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC----CeEEEEEEeCH-------------HHHHHHHHHc
Q 007119 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN----SALVAIVSVDQ-------------DALKAWAASE 603 (617)
Q Consensus 541 ~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~----~~~va~vv~~~-------------~~~~~~~~~~ 603 (617)
+||+||+||+ +|++|+|.+||++|.+||+|.+++|++.++. +.++|+|++++ ++++++++++
T Consensus 399 ~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~ 477 (521)
T 3l8c_A 399 GGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDH 477 (521)
T ss_dssp EEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGG
T ss_pred eCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhh
Confidence 9999999997 8999999999999999999999999986532 46889999753 4678888877
Q ss_pred CCCCChhhh
Q 007119 604 GIQSLAPSD 612 (617)
Q Consensus 604 ~~~~~~~~~ 612 (617)
...+++|..
T Consensus 478 l~~~~~P~~ 486 (521)
T 3l8c_A 478 MMSYMMPSK 486 (521)
T ss_dssp SCGGGSCSE
T ss_pred CccccCCeE
Confidence 655666643
No 24
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=2.8e-71 Score=648.00 Aligned_cols=476 Identities=25% Similarity=0.349 Sum_probs=343.8
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
+...|+.++|.++++++||++|+++. +.. +++||+||.++++++|++|+++|+++||+|+|+++|+++|++++
T Consensus 58 p~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~ 130 (979)
T 3tsy_A 58 PNHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSF 130 (979)
T ss_dssp CTTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHH
Confidence 46689999999999999999999853 211 56999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEee
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~ 235 (617)
+||+++|+++||++|.++++++.+++++++++++|++....+.+....... .+ .++.++..... ........
T Consensus 131 lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~------~~~~~~~~ 202 (979)
T 3tsy_A 131 LAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD-GV-VIVCIDDNESV------PIPEGCLR 202 (979)
T ss_dssp HHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS-CC-EEEECCCCTTS------CCCTTEEE
T ss_pred HHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC-Cc-eEEEeCCcccc------cCCccccc
Confidence 999999999999999999999999999999999999988766655544332 22 34444432110 00112355
Q ss_pred HHHHHhcCcc--CCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhc----CcccCCCcEEEEeCChHHH
Q 007119 236 YSNLLSQGRS--NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL----GTKFYPSDVYISYLPLAHI 309 (617)
Q Consensus 236 ~~~l~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~lPl~h~ 309 (617)
|.++...... ...+.....++|+++|+|||||||.||||++||+++++.+..... .+.+.++|++++++|++|.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~ 282 (979)
T 3tsy_A 203 FTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHI 282 (979)
T ss_dssp GGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSH
T ss_pred HHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHH
Confidence 6665443322 112334567899999999999999999999999999988766543 3568899999999999999
Q ss_pred HHHHH-HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHH
Q 007119 310 YERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM 387 (617)
Q Consensus 310 ~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 387 (617)
+++.. .+.++..|+++++.+ +++..+++.++++++|++.++|+++..+.+...
T Consensus 283 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 337 (979)
T 3tsy_A 283 YALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE------------------------- 337 (979)
T ss_dssp HHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGG-------------------------
T ss_pred HHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcc-------------------------
Confidence 99966 567899999999987 799999999999999999999999988866210
Q ss_pred hcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccC-----CCCCCC
Q 007119 388 LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQL-----DEGDNL 461 (617)
Q Consensus 388 ~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~-----~~~~~~ 461 (617)
......++||.+++||+++++++.+++++.| +++++++||+||++.+++.. .+....
T Consensus 338 -----------------~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~ 400 (979)
T 3tsy_A 338 -----------------TEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVK 400 (979)
T ss_dssp -----------------GGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCC
T ss_pred -----------------ccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccC
Confidence 0011125899999999999999999999998 89999999999998765433 223356
Q ss_pred CCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEE
Q 007119 462 SGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKII 541 (617)
Q Consensus 462 ~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~ 541 (617)
.+++|+|+++++++|+|++++..++.|+ .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+
T Consensus 401 ~~~~G~p~~~~~~~i~d~~~~~~~~~g~---~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~ 477 (979)
T 3tsy_A 401 SGACGTVVRNAEMKIVDPDTGDSLSRNQ---PGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIV 477 (979)
T ss_dssp TTCCCEECSSCEEEEECTTSCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEE
T ss_pred CCCcCcccCCcEEEEEeCCCCCCCCCCC---ccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEe
Confidence 7899999999999999987788888887 8999999999999999999999999999999999999999999999999
Q ss_pred ecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCCCCChhhh
Q 007119 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 542 gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~~~~~~~~~~~~~~~~~~ 612 (617)
||+||+||+ +|++|+|.|||++|.+||+|.+++|++.+++ +.++|+|++. ++++++|++++...++.|..
T Consensus 478 GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~ 556 (979)
T 3tsy_A 478 DRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINK 556 (979)
T ss_dssp EESCC---------------------------------------------------------------------------
T ss_pred cCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCCCCHHHHHHHHHHhcccccCCeE
Confidence 999999997 8999999999999999999999999997653 5789999863 46788999887666666643
No 25
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.8e-70 Score=596.20 Aligned_cols=459 Identities=20% Similarity=0.235 Sum_probs=368.4
Q ss_pred CHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 007119 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACS 159 (617)
Q Consensus 80 tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 159 (617)
|+.++|+++++++||++|+.+. + +++||+||.++++++|++|.+. +||+|+|+++|+++|+++++||+
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~ 69 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW 69 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence 6778999999999999999753 2 3599999999999999999987 89999999999999999999999
Q ss_pred hcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEe-eHHH
Q 007119 160 AYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL-TYSN 238 (617)
Q Consensus 160 ~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~-~~~~ 238 (617)
++|++++|+++.++.+++.+++++++++++|++............ ...+..+........... ........ ..+.
T Consensus 70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 145 (501)
T 3ipl_A 70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS-LDDIEFAGRDITTNGLLD---NTMGIQYDTSNET 145 (501)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE-TTC-------------------------------
T ss_pred HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc-cccceeeeeecccccccc---cccccccccchhh
Confidence 999999999999999999999999999999999765443322111 111111111100000000 00000000 0111
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHH
Q 007119 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMT 318 (617)
Q Consensus 239 l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~ 318 (617)
+...............++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++...+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~ 225 (501)
T 3ipl_A 146 VVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRA 225 (501)
T ss_dssp ----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHH
T ss_pred ccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHH
Confidence 11111100112234578999999999999999999999999999998888878899999999999999999999888889
Q ss_pred HHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchh
Q 007119 319 VYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMW 397 (617)
Q Consensus 319 l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 397 (617)
++.|+++++.+ +++..+++.++++++|++.++|+++..+.+...
T Consensus 226 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------------------- 270 (501)
T 3ipl_A 226 VIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGL----------------------------------- 270 (501)
T ss_dssp HHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTC-----------------------------------
T ss_pred HHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCC-----------------------------------
Confidence 99999999987 799999999999999999999999998876310
Q ss_pred hHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCC--CCCCCCcCCCCcCeEEE
Q 007119 398 DRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--DNLSGHVGSPNAACEIK 475 (617)
Q Consensus 398 d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~v~ 475 (617)
....+||.+++||+++++++.+.+.+ +++++++.||+||+++.++...+. ....+++|.|+++++++
T Consensus 271 ----------~~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 339 (501)
T 3ipl_A 271 ----------HEPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVK 339 (501)
T ss_dssp ----------CSCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEE
T ss_pred ----------CCcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCCCCCCCcEEE
Confidence 00027999999999999999999987 599999999999998755543332 24668899999999999
Q ss_pred EeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecCCeee
Q 007119 476 LVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEY 555 (617)
Q Consensus 476 ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~ 555 (617)
|+|.+ .+ +.|||+|+|+++++|||++|+.|.+ | .+|||+|||+|++|+||+|+|+||+||+||+ +|++
T Consensus 340 i~d~~------~~---~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~~ 407 (501)
T 3ipl_A 340 IKNPN------KE---GHGELMIKGANVMNGYLYPTDLTGT-F-ENGYFNTGDIAEIDHEGYVMIYDRRKDLIIS-GGEN 407 (501)
T ss_dssp EESCC------SS---CCEEEEEESTTSCSCCSBSTTCCCS-E-ETTEEEEEEEEEECTTSCEEEEEECCCCEEC-SSCE
T ss_pred EecCC------CC---CccEEEEeccchhhhhCcChhhcch-h-cCCceecCCEEEEcCCCeEEEEccccceEEE-CCEE
Confidence 99943 23 3799999999999999999999988 6 7899999999999999999999999999995 9999
Q ss_pred echHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe----CHHHHHHHHHHcCCCCChhhh
Q 007119 556 IAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV----DQDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 556 i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~----~~~~~~~~~~~~~~~~~~~~~ 612 (617)
|+|.|||+++.+||+|.+++|+|.+++ +.++|+|++ +++++.++++++...+++|..
T Consensus 408 v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~l~~~l~~~L~~~~~P~~ 471 (501)
T 3ipl_A 408 IYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISKAQLIAYLSKHLAKYKVPKH 471 (501)
T ss_dssp ECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCCHHHHHHHHHHHSCGGGSCSE
T ss_pred ECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCCCHHHHHHHHHhhCccccCCCE
Confidence 999999999999999999999998754 467888886 468999999998766776653
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=7.3e-71 Score=598.80 Aligned_cols=449 Identities=24% Similarity=0.289 Sum_probs=367.6
Q ss_pred CCCCHHHHHHHHHHhcCC-CccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRD-YKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd-~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
++.|+.+.|.++++++|+ ++|+.+. + +.+||+||.++++++|++|. .|++|+|+++|+++|++++
T Consensus 20 ~~~tl~~~l~~~a~~~p~d~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~ 85 (505)
T 3nyq_A 20 HMSSLFPALSPAPTGAPADRPALRFG---E------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAV 85 (505)
T ss_dssp ----CCTTTSSCCCSGGGGSEEEEET---T------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHH
T ss_pred ccchhHHHHHHHHHhCCCCCeEEEEC---C------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHH
Confidence 567888889999999987 9999863 2 46999999999999999885 3889999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEee
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~ 235 (617)
+||+++|+++|||++.++.+++.+++++++++++|++.+... ......+..+. ++..
T Consensus 86 la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~~~~~~~~~~~-~~~~----------------- 142 (505)
T 3nyq_A 86 VAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL-----PPALGALERVD-VDVR----------------- 142 (505)
T ss_dssp HHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC-----CGGGTTSEEEE-CCTT-----------------
T ss_pred HHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc-----chhhccccccc-cccc-----------------
Confidence 999999999999999999999999999999999999865210 00111222211 1110
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH-
Q 007119 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN- 314 (617)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~- 314 (617)
.....+.....++|+++|+|||||||.||||++||+++.+.+......+++.++|++++.+|++|.+++..
T Consensus 143 --------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~ 214 (505)
T 3nyq_A 143 --------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLG 214 (505)
T ss_dssp --------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTT
T ss_pred --------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHH
Confidence 00112233457899999999999999999999999999999988888888999999999999999999876
Q ss_pred HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCC
Q 007119 315 QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (617)
Q Consensus 315 ~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (617)
.+.++..|+++++.+ +++..+++.+ ++++|+++++|+++..+.+.+.....
T Consensus 215 ~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~--------------------------- 266 (505)
T 3nyq_A 215 ILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE--------------------------- 266 (505)
T ss_dssp THHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH---------------------------
T ss_pred HHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch---------------------------
Confidence 677899999999887 7899999999 88999999999999998764211000
Q ss_pred CchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCCcCCCCcCeE
Q 007119 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACE 473 (617)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~ 473 (617)
.....+++|.+++||+++++++.+++.+.+++++++.||+||++..++.........+++|+|+++++
T Consensus 267 ------------~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~ 334 (505)
T 3nyq_A 267 ------------LAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVE 334 (505)
T ss_dssp ------------HHHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCE
T ss_pred ------------hhcccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCCCCCCCcccCCCCCE
Confidence 00001378999999999999999999999999999999999999877766555667789999999999
Q ss_pred EEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecC-CCeeecCC
Q 007119 474 IKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK-KNIFKLAQ 552 (617)
Q Consensus 474 v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~-~d~ikl~~ 552 (617)
++|+| +++..++...+++.|||+|+|++++.|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||+ ||+||+ +
T Consensus 335 ~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~-~ 412 (505)
T 3nyq_A 335 LRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKS-G 412 (505)
T ss_dssp EEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEE-T
T ss_pred EEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEe-C
Confidence 99999 45555554111238999999999999999999999999988999999999999999999999998 599996 8
Q ss_pred eeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH-------HHHHHHHHHcCCCCChhhh
Q 007119 553 GEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ-------DALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 553 G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-------~~~~~~~~~~~~~~~~~~~ 612 (617)
|++|+|.|||++|.+||+|.+++|+|.+++ +.++|+|++.+ ++++++++++...+++|..
T Consensus 413 G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l~~~L~~~~~P~~ 482 (505)
T 3nyq_A 413 GYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRV 482 (505)
T ss_dssp TEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHHHHHHHHHTCGGGSCSE
T ss_pred CEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHHHHHHHhhCCCCcCccE
Confidence 999999999999999999999999997754 57999999753 6899999998776777764
No 27
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=9.3e-69 Score=594.94 Aligned_cols=456 Identities=19% Similarity=0.223 Sum_probs=371.3
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
...|+.++|.++++++||++|+.+. ++ +..+++||+||.++++++|++|.+.|+++||+|+|+++|+++|+++++
T Consensus 9 ~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~l 83 (590)
T 3kxw_A 9 QCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFL 83 (590)
T ss_dssp TCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHH
Confidence 5679999999999999999999876 42 234679999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCC---HHHHHHHHHhccccEEEecccchHHHHhhc-cCCCCceEEEEECCCCCCCCCCCccCCce
Q 007119 157 ACSAYSFISVPLYDTLG---PDAVKYIVNHASVQAVFCVPQTLNSLLSCL-SEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~---~~~l~~il~~~~~~~vi~~~~~~~~l~~~~-~~~~~~~~iv~~~~~~~~~~~~~~~~~~~ 232 (617)
||+++|+++||+++.++ .+++.++++++++++++++.+....+.... ...+....+ .
T Consensus 84 A~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~-------------------~ 144 (590)
T 3kxw_A 84 GCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKI-------------------P 144 (590)
T ss_dssp HHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTE-------------------E
T ss_pred HHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccc-------------------c
Confidence 99999999999999884 578999999999999999987665544322 111211111 1
Q ss_pred EeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHH
Q 007119 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (617)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~ 312 (617)
+..++++.... ..........++|+++|+|||||||.||||++||+++++.+.+....+++.++|++++++|++|.+++
T Consensus 145 ~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~ 223 (590)
T 3kxw_A 145 AIALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGL 223 (590)
T ss_dssp EEEGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHH
T ss_pred eeechhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhh
Confidence 11222211111 11123345678999999999999999999999999999999888888899999999999999999999
Q ss_pred HH-HHHHHHhCcEEEEec-C----ChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 007119 313 AN-QVMTVYSGVAVGFYQ-G----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (617)
Q Consensus 313 ~~-~~~~l~~G~~~~~~~-~----~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 386 (617)
.. .+.+++.|+++++.+ + ++..+++.|+++++|++.++|.++..+.+.+....
T Consensus 224 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--------------------- 282 (590)
T 3kxw_A 224 IGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEK--------------------- 282 (590)
T ss_dssp HTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGG---------------------
T ss_pred HHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhh---------------------
Confidence 87 678899999999987 2 89999999999999999999999988876321100
Q ss_pred HhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhC------CceeccccccccccccccCCCC--
Q 007119 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG------GRVTEGYGMTETSCLISQLDEG-- 458 (617)
Q Consensus 387 ~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~------~~v~~~YG~TE~~~~~~~~~~~-- 458 (617)
......++||.+++||+++++++.+.+.+.|+ ++++++||+||++++++...+.
T Consensus 283 ------------------~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~ 344 (590)
T 3kxw_A 283 ------------------KEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSS 344 (590)
T ss_dssp ------------------GTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSC
T ss_pred ------------------ccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCC
Confidence 01111258999999999999999999999873 3799999999999876643221
Q ss_pred -------------------------CCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhh
Q 007119 459 -------------------------DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQ 513 (617)
Q Consensus 459 -------------------------~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~ 513 (617)
....+++|.|+++ ++|+|.+++..++.|+ .|||+|+||++++|||++|+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~ 419 (590)
T 3kxw_A 345 YKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQ---VGEIWVQSNSVAKGYWNQPEE 419 (590)
T ss_dssp CCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTB---CEEEEEESTTSCCCBTTCHHH
T ss_pred ceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCC---EEEEEEeCCcccccccCChhH
Confidence 1234678999998 8899976677787776 899999999999999999999
Q ss_pred hhcccCC------CC--eeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHH-hcCCCcc--eEEEEeeCCC
Q 007119 514 TKEVIDE------DG--WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVY-AKCKFVG--QCFVYGDSFN 582 (617)
Q Consensus 514 t~~~~~~------~g--w~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l-~~~p~V~--~~~V~g~~~~ 582 (617)
|++.|.. +| ||+|||+|++| ||+|+|+||+||+||+ +|++|+|.|||++| ..+|.|. +|+|++.+++
T Consensus 420 t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~ 497 (590)
T 3kxw_A 420 TRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEE 497 (590)
T ss_dssp HHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEET
T ss_pred HHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCccEEEEEecCC
Confidence 9999953 24 99999999999 9999999999999997 89999999999999 8899998 7888886543
Q ss_pred --CeEEEEEEeC--------HHHHHHHHHHc
Q 007119 583 --SALVAIVSVD--------QDALKAWAASE 603 (617)
Q Consensus 583 --~~~va~vv~~--------~~~~~~~~~~~ 603 (617)
+.++++|++. .+++.++++++
T Consensus 498 ~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~ 528 (590)
T 3kxw_A 498 HEYKLTVMCEVKNRFMDDVAQDNLFNEIFEL 528 (590)
T ss_dssp TEEEEEEEEEESCTTCCHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEeccccccchhHHHHHHHHHHH
Confidence 5777888753 24566676654
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.2e-68 Score=589.94 Aligned_cols=461 Identities=16% Similarity=0.145 Sum_probs=317.1
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecC----ccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH
Q 007119 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDG----TVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW 151 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~----~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~ 151 (617)
....|+.++|+++++++||++|+.+. ++ .....+.+||+||.++++++|++|.+.|+ +||+|+|+++|+++|
T Consensus 17 ~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~ 92 (562)
T 3ite_A 17 TSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA 92 (562)
T ss_dssp -CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH
T ss_pred cccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH
Confidence 35578999999999999999999875 32 12234679999999999999999999999 799999999999999
Q ss_pred HHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCc
Q 007119 152 LIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231 (617)
Q Consensus 152 ~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~ 231 (617)
+++++||+++|+++|||++.++.+++.+++++++++++|++......+ ..+....++..+.
T Consensus 93 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~-------------- 153 (562)
T 3ite_A 93 FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLDTKN-------------- 153 (562)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEETTC--------------
T ss_pred HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeecccc--------------
Confidence 999999999999999999999999999999999999999986654321 1111112221110
Q ss_pred eEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhc--------CcccCCCcEEEEe
Q 007119 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL--------GTKFYPSDVYISY 303 (617)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~--------~~~~~~~d~~l~~ 303 (617)
..+.+....... ........++++++|+|||||||.||||++||+++.+.+..+.. ...+...+++++.
T Consensus 154 --~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (562)
T 3ite_A 154 --QSFIENLSTQDT-SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCL 230 (562)
T ss_dssp --HHHHHHHHHSCC-SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECC
T ss_pred --hhhhhhcccccc-cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEe
Confidence 123333222211 12223456789999999999999999999999999887765433 2457788999999
Q ss_pred CChHHHHHHHHHHHHHHhCcEEEEec--CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 007119 304 LPLAHIYERANQVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYN 381 (617)
Q Consensus 304 lPl~h~~~~~~~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 381 (617)
.|++|.+++...+.++..|+++++.+ ..+..+.+.++++++|++.++|++++.+...
T Consensus 231 ~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~--------------------- 289 (562)
T 3ite_A 231 ASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV--------------------- 289 (562)
T ss_dssp SCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC---------------------
T ss_pred cCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC---------------------
Confidence 99999998887888999999999866 3457788999999999999999987654210
Q ss_pred HHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCC-CCC
Q 007119 382 AKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDE-GDN 460 (617)
Q Consensus 382 ~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~-~~~ 460 (617)
....++||.+++||+++++++.+++++.++++++++||+||++..++.... .+.
T Consensus 290 -------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 344 (562)
T 3ite_A 290 -------------------------PEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDS 344 (562)
T ss_dssp -------------------------GGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTTS
T ss_pred -------------------------ccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCCC
Confidence 001258999999999999999999999889999999999999876655432 335
Q ss_pred CCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCC--eeeecceEEEecCCcE
Q 007119 461 LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDG--WFHTGDIGMWIPGGRL 538 (617)
Q Consensus 461 ~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g--w~~TGDlg~~~~dG~l 538 (617)
..+++|+|+++++++|+|.+++..++.|+ .|||+|+|+++++|||++|+.|+..+ .+| ||+|||+|++|+||+|
T Consensus 345 ~~~~~G~p~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~t~~~~-~~g~~w~~TGDlg~~d~dG~l 420 (562)
T 3ite_A 345 DTRCIGHPLGDSVAHVLAPGSNEHVKKGM---AGELVIEGSLVANGYLNRPDAKGFCD-INGRKMYRTGDIVRMDADSSI 420 (562)
T ss_dssp CTTEEEEECTTCEEEEECTTSSCBCCTTS---CEEEEEESTTSCCEESSCTTCCSEEE-ETTEEEEEEEEEEEECTTSCE
T ss_pred CCccccccCCCCeEEEEeCCCCCCCCCCC---ceEEEEeccccchhhCCCcccccccc-CCCCEEEecCCEEEEcCCCeE
Confidence 66789999999999999977777777776 89999999999999999999998876 455 9999999999999999
Q ss_pred EEEecCCCeeecCCeeeechHHHHHHHhcC-CCcceEEEEeeCCC---C-eEEEEEEeCH------------------HH
Q 007119 539 KIIDRKKNIFKLAQGEYIAAEKIENVYAKC-KFVGQCFVYGDSFN---S-ALVAIVSVDQ------------------DA 595 (617)
Q Consensus 539 ~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~-p~V~~~~V~g~~~~---~-~~va~vv~~~------------------~~ 595 (617)
+|+||+||+||+ +|++|+|.|||++|.+| |.|.+++|++.++. + .++++|+... ++
T Consensus 421 ~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 499 (562)
T 3ite_A 421 LFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNS 499 (562)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred EEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchhhHHHH
Confidence 999999999996 99999999999999998 88889998886643 2 3445554321 37
Q ss_pred HHHHHHHcCCCCChhhhh
Q 007119 596 LKAWAASEGIQSLAPSDC 613 (617)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~ 613 (617)
+++||+++...+++|..+
T Consensus 500 l~~~~~~~L~~y~~P~~i 517 (562)
T 3ite_A 500 LRQACEQTLPAYMVPDFI 517 (562)
T ss_dssp ------------------
T ss_pred HHHHHHhhCCcccCCcEE
Confidence 888998887667777643
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=7.2e-67 Score=578.26 Aligned_cols=454 Identities=20% Similarity=0.305 Sum_probs=370.5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHH
Q 007119 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (617)
Q Consensus 75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 154 (617)
.++..|+.++|+++++++|+.+++. ...+..+++||+||.++++++|++|+++|+++||+|+|+++|+++|+++
T Consensus 17 ~~~~~tl~~~l~~~a~~~p~~~~~~------~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~ 90 (576)
T 3gqw_A 17 YADFPTLVDALDYAALSSAGMNFYD------RRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEA 90 (576)
T ss_dssp CSCCSSHHHHHHHHTTSSCEEEEEC------TTSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHH
T ss_pred cCCCCcHHHHHHHHhhCCCCeEEeC------CCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHH
Confidence 4577899999999999999987763 2223346799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCC-------HHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCc
Q 007119 155 DHACSAYSFISVPLYDTLG-------PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPI 227 (617)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~-------~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~ 227 (617)
++||+++|+++||+++.++ .+++.+++++++++++|++.+....+.......+.+..
T Consensus 91 ~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~---------------- 154 (576)
T 3gqw_A 91 FFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHV---------------- 154 (576)
T ss_dssp HHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEE----------------
T ss_pred HHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCccee----------------
Confidence 9999999999999999999 79999999999999999998887777665544433221
Q ss_pred cCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcC-cccCCCcEEEEeCCh
Q 007119 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG-TKFYPSDVYISYLPL 306 (617)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~-~~~~~~d~~l~~lPl 306 (617)
......... ...........++|+++|+|||||||.||||++||+++++.+...... +.+.++|++++++|+
T Consensus 155 ------~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 227 (576)
T 3gqw_A 155 ------LSHAWFKAL-PEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPF 227 (576)
T ss_dssp ------EEHHHHHTS-CCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCT
T ss_pred ------cchhhhhcc-cccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCc
Confidence 122222111 111223344578999999999999999999999999999888776554 789999999999999
Q ss_pred HHHHHHHH-HHHHHHhCcEEEEec-----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Q 007119 307 AHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAY 380 (617)
Q Consensus 307 ~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~ 380 (617)
+|.+++.. .+.++..|+++++.+ .++..+++.++++++|+++++|.++..+.+.+..
T Consensus 228 ~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~----------------- 290 (576)
T 3gqw_A 228 YHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNE----------------- 290 (576)
T ss_dssp TSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCH-----------------
T ss_pred cccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcc-----------------
Confidence 99999877 456788999998876 4899999999999999999999999877552111
Q ss_pred HHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh------CCceecccccccccccccc
Q 007119 381 NAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF------GGRVTEGYGMTETSCLISQ 454 (617)
Q Consensus 381 ~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~------~~~v~~~YG~TE~~~~~~~ 454 (617)
........+++|.+++||+++++++.+++.+.+ ++.+++.||+||++..++.
T Consensus 291 ----------------------~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~ 348 (576)
T 3gqw_A 291 ----------------------KDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSF 348 (576)
T ss_dssp ----------------------HHHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEE
T ss_pred ----------------------cccccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeec
Confidence 011111235899999999999999999999988 6789999999999987665
Q ss_pred CCCCCC----------------------------CCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCcccccc
Q 007119 455 LDEGDN----------------------------LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKG 506 (617)
Q Consensus 455 ~~~~~~----------------------------~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~G 506 (617)
...... ...++|+|+++++++|+| +++..++.|+ .|||+|+|+++++|
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~~~~g 424 (576)
T 3gqw_A 349 SDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGMPVAERV---VGHICISGPSLMSG 424 (576)
T ss_dssp CCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSCBCCTTB---CEEEEEESTTSCCC
T ss_pred ccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCCCCCCCC---eEEEEEeCcccccc
Confidence 432210 112799999999999999 7778888776 89999999999999
Q ss_pred ccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC-CeE
Q 007119 507 YYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN-SAL 585 (617)
Q Consensus 507 Y~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~-~~~ 585 (617)
||++|+.|.+.+ .+|||+|||+|++ +||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+++|++.... ...
T Consensus 425 Y~~~~~~~~~~~-~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~ 501 (576)
T 3gqw_A 425 YFGDQVSQDEIA-ATGWLDTGDLGYL-LDGYLYVTGRIKDLIII-RGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQEKI 501 (576)
T ss_dssp BTTCHHHHHHHH-HHSCEEEEEEEEE-ETTEEEEEEETTTCEEE-TTEEECHHHHHHHHTTSSSCCTTSEEEEECTTSCE
T ss_pred ccCCcccccccc-CCCeeeccceEEE-ECCEEEEEecCcceEEE-CCEEECHHHHHHHHHhCcccccccEEEEEcCCccE
Confidence 999999998877 8999999999999 79999999999999997 9999999999999999999998777765433 344
Q ss_pred EEEEEe--C----HHHHHHHHHHc
Q 007119 586 VAIVSV--D----QDALKAWAASE 603 (617)
Q Consensus 586 va~vv~--~----~~~~~~~~~~~ 603 (617)
+++++. + .+++.++++++
T Consensus 502 ~~~~~~~~~~~~~~~~l~~~l~~~ 525 (576)
T 3gqw_A 502 ILQIQCRISDEERRGQLIHALAAR 525 (576)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHH
T ss_pred EEEEEEecCchhHHHHHHHHHHHH
Confidence 444443 2 13455555543
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=7.1e-67 Score=625.78 Aligned_cols=450 Identities=21% Similarity=0.270 Sum_probs=380.1
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007119 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (617)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (617)
..++.++|++.++++||++|+.+. + +.+||+||.++++++|++|.+.|+++|++|+|+++|+++|+++++|
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 378999999999999999999753 3 3599999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHH
Q 007119 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (617)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~ 237 (617)
|+++|+++|||+|.++.+++.++++++++++++++......+. .++.....+.+++..
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~~~~~~~~~~~~------------------ 591 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAA----ELPYTGTTLFIDDQT------------------ 591 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTST----TCCCCSEEEESSCGG------------------
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhh----ccCCCCcEEEecccc------------------
Confidence 9999999999999999999999999999999999876543321 122222233322210
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHH
Q 007119 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (617)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~ 317 (617)
.. .. ....+.....++|+++|+|||||||.||||+++|+++.+. ......+.+.++|+++.+.|++|..+....+.
T Consensus 592 ~~-~~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~ 667 (1304)
T 2vsq_A 592 RF-EE--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYA 667 (1304)
T ss_dssp GG-GS--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHH
T ss_pred cc-cc--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHH
Confidence 00 00 1112233467899999999999999999999999999876 44555678899999999999999998888889
Q ss_pred HHHhCcEEEEec----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCC
Q 007119 318 TVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (617)
Q Consensus 318 ~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (617)
+++.|+++++.+ .++..+.+.|+++++|++.++|++++.+.+....
T Consensus 668 ~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~------------------------------ 717 (1304)
T 2vsq_A 668 SMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGED------------------------------ 717 (1304)
T ss_dssp HHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH------------------------------
T ss_pred HHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh------------------------------
Confidence 999999999986 5899999999999999999999999988652000
Q ss_pred CchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhC-CceeccccccccccccccCCCC----CCCCCCcCCC
Q 007119 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDEG----DNLSGHVGSP 468 (617)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~-~~v~~~YG~TE~~~~~~~~~~~----~~~~~~vG~p 468 (617)
.+ ++||.+++||+++++++.+.+.+.++ ++++|+||+||++..++..... .....++|+|
T Consensus 718 -------~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p 782 (1304)
T 2vsq_A 718 -------WM--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKP 782 (1304)
T ss_dssp -------HH--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEE
T ss_pred -------cC--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCcee
Confidence 00 37999999999999999999988774 6899999999998766543222 2345689999
Q ss_pred CcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccC------CCCeeeecceEEEecCCcEEEEe
Q 007119 469 NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID------EDGWFHTGDIGMWIPGGRLKIID 542 (617)
Q Consensus 469 ~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~------~~gw~~TGDlg~~~~dG~l~i~g 542 (617)
+++++++|+| ++++.++.|. .|||||+|+++++||+|+|+.|++.|. .++||+|||+|++++||.|+|+|
T Consensus 783 ~~~~~~~i~d-~~~~~~p~G~---~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~G 858 (1304)
T 2vsq_A 783 ISNASVYILN-EQSQLQPFGA---VGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAG 858 (1304)
T ss_dssp CTTEEEEEEC-TTSCBCCTTC---CEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEE
T ss_pred eCCCEEEEEC-CCcCCCCCCC---ceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEc
Confidence 9999999999 6677888886 899999999999999999999999983 24599999999999999999999
Q ss_pred cCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCC---CCeEEEEEEe----CHHHHHHHHHHcCCCCChhhh
Q 007119 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSV----DQDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 543 R~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~----~~~~~~~~~~~~~~~~~~~~~ 612 (617)
|+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ...++|+|++ +.++++++++++...+++|..
T Consensus 859 R~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~~~~~l~~~l~~~Lp~ymvP~~ 934 (1304)
T 2vsq_A 859 RIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLSAEDVKAHLKKQLPAYMVPQT 934 (1304)
T ss_dssp EGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSSCHHHHHHHHHHHSCGGGSCSE
T ss_pred CCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCCCHHHHHHHHHHhChHhhhccE
Confidence 99999998 899999999999999999999999999764 3589999996 458899999998776777654
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=8.7e-63 Score=533.28 Aligned_cols=400 Identities=18% Similarity=0.218 Sum_probs=318.9
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
...|+.++|.++++++||++|+.+....++..++.+++||+||.++++++|++|++.|+ +||+|+|+++|+++|+++++
T Consensus 22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l 100 (480)
T 3t5a_A 22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL 100 (480)
T ss_dssp --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence 35799999999999999999999861111233456789999999999999999999996 99999999999999999999
Q ss_pred HHHhcCCeEEecCC---CCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCc--eEEEEECCCCCCCCCCCccCCc
Q 007119 157 ACSAYSFISVPLYD---TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTV--RLIVVIGGIDDQIPSLPITTGV 231 (617)
Q Consensus 157 A~~~~G~v~vpl~~---~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~--~~iv~~~~~~~~~~~~~~~~~~ 231 (617)
||+++|+++|||++ .++.+++.+++++++++++|++....+.+.+.....+.. ..++.++...
T Consensus 101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 168 (480)
T 3t5a_A 101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD------------ 168 (480)
T ss_dssp HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC------------
T ss_pred HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc------------
Confidence 99999999999999 788999999999999999999998887777655443321 1233322211
Q ss_pred eEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCC------CcEEEEeCC
Q 007119 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYP------SDVYISYLP 305 (617)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~------~d~~l~~lP 305 (617)
.. ...........++|+++|+|||||||.||||++||+++++.+......+.+.. +|++++++|
T Consensus 169 ---------~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 238 (480)
T 3t5a_A 169 ---------LD-APNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLP 238 (480)
T ss_dssp ---------TT-CC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCC
T ss_pred ---------cc-cccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCC
Confidence 00 01112234467899999999999999999999999999998887766666666 999999999
Q ss_pred hHHHHHHHH-HHHHHHhCcEEEEec-----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHH
Q 007119 306 LAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAA 379 (617)
Q Consensus 306 l~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a 379 (617)
++|.+++.. .+.+++.|+++++.+ .++..+++.++++++| +..+|+++..+.......
T Consensus 239 l~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~--------------- 302 (480)
T 3t5a_A 239 FYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTD--------------- 302 (480)
T ss_dssp TTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCT---------------
T ss_pred CcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCc---------------
Confidence 999999876 577899999999986 3999999999999999 889999988876531100
Q ss_pred HHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhC------Cceeccccccccccccc
Q 007119 380 YNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG------GRVTEGYGMTETSCLIS 453 (617)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~------~~v~~~YG~TE~~~~~~ 453 (617)
........++||.+++||+++++++.+++.+.|+ +.++++||+||++..++
T Consensus 303 -----------------------~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 359 (480)
T 3t5a_A 303 -----------------------DDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVA 359 (480)
T ss_dssp -----------------------GGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEE
T ss_pred -----------------------ccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEe
Confidence 0011112368999999999999999999999874 37999999999998776
Q ss_pred cCCCCC-------------------------CCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCcccccccc
Q 007119 454 QLDEGD-------------------------NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYY 508 (617)
Q Consensus 454 ~~~~~~-------------------------~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~ 508 (617)
...... ...+++|+|++ ++++|+|.+++..++.|+ .|||+|+|+++++|||
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~---~GEl~v~g~~v~~GY~ 435 (480)
T 3t5a_A 360 TSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGT---VGEIWVHGDNVANGYW 435 (480)
T ss_dssp ECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTB---CEEEEEESTTSCCCBT
T ss_pred ecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCC---EEEEEEeCCccccccc
Confidence 654332 23358999999 999999976677788886 8999999999999999
Q ss_pred CChhhhhcccC-----------CCCeeeecceEEEecCCcEEEEec
Q 007119 509 KDEIQTKEVID-----------EDGWFHTGDIGMWIPGGRLKIIDR 543 (617)
Q Consensus 509 ~~~~~t~~~~~-----------~~gw~~TGDlg~~~~dG~l~i~gR 543 (617)
++|++|+++|+ .+|||+|||+|++| ||+|+|+||
T Consensus 436 ~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 436 QKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp TBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred cCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 99999999995 57899999999997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=6.5e-48 Score=398.97 Aligned_cols=281 Identities=17% Similarity=0.143 Sum_probs=237.4
Q ss_pred CCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecCChhh
Q 007119 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMK 334 (617)
Q Consensus 255 ~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~~~~~~~~~~~ 334 (617)
.||+++|+|||||||.||||++||+++++.+......+++.++|++++++|++|++++...+.++..|+++++... ...
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~-~~~ 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEP-TAN 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECC-CSC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCc-ccc
Confidence 4789999999999999999999999999999888888999999999999999999999888889999999998762 223
Q ss_pred HHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceE
Q 007119 335 LMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVR 414 (617)
Q Consensus 335 l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr 414 (617)
.++.++++++|++.++|+++..+++.... ....++||
T Consensus 115 ~~~~i~~~~~t~~~~~P~~l~~ll~~~~~-------------------------------------------~~~l~~lr 151 (358)
T 4gs5_A 115 PLAGLDHADFDFVAMVPMQLQSILENSAT-------------------------------------------SGQVDRLG 151 (358)
T ss_dssp TTTTCSSCCCSEEEECHHHHHHHHHCTTT-------------------------------------------GGGGGGGC
T ss_pred HHHHHHHhCCeEEEcChHHHHHhhccccc-------------------------------------------cccCCcce
Confidence 45678899999999999999988762100 00114899
Q ss_pred EEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcc
Q 007119 415 FMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRG 494 (617)
Q Consensus 415 ~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~G 494 (617)
.+++||+++++++.+++++ ++++++++||+||+++.++.........+++|.+.|++++++.+ .|
T Consensus 152 ~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~~--------------~G 216 (358)
T 4gs5_A 152 KVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVDE--------------RG 216 (358)
T ss_dssp SEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEECT--------------TS
T ss_pred EEEEcccCCCchheecccc-cCceEEeccccccccceeecccccccccceeeccCCCeEEEecC--------------cC
Confidence 9999999999999999987 58999999999999988777766667788999999999988754 79
Q ss_pred eEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHH---hcCCCc
Q 007119 495 EICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVY---AKCKFV 571 (617)
Q Consensus 495 El~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l---~~~p~V 571 (617)
||+++|+.+ .+|||+|||+|++|+|| ++|+||+||+||+ +|++|+|.|||++| .+||.|
T Consensus 217 el~~~g~~~----------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~p~V 278 (358)
T 4gs5_A 217 CLHISGAVT----------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAAVFHHLNI 278 (358)
T ss_dssp EEEEESGGG----------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHHHHHHHTC
T ss_pred ceEEecccc----------------cCcceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHHhccCCCc
Confidence 999998632 68999999999999988 6778999999996 89999999999887 468999
Q ss_pred ceEEEE-eeCCC---CeEEEEEEeC-----HHHHHHHHHHcCCCCChhhh
Q 007119 572 GQCFVY-GDSFN---SALVAIVSVD-----QDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 572 ~~~~V~-g~~~~---~~~va~vv~~-----~~~~~~~~~~~~~~~~~~~~ 612 (617)
.+++|+ +.+++ +.++|+|++. .+++.++++++...+++|..
T Consensus 279 ~~a~vv~~~~d~~~ge~~~a~v~~~~~~~~~~~l~~~l~~~L~~~~~P~~ 328 (358)
T 4gs5_A 279 GNAFFCWWEPDAKLGQKLVLVIENAMPEALTERLTAEIRSRVSTYENPKH 328 (358)
T ss_dssp CCCEEEEEEEETTTEEEEEEEEESCCCHHHHHHHHHHHHHHSCGGGSCSC
T ss_pred cEEEEEEecCCccCCEEEEEEEECCCCCcCHHHHHHHHHhhCCCCCCceE
Confidence 998876 44443 4688888864 36789999988766666653
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=1.8e-44 Score=384.60 Aligned_cols=309 Identities=15% Similarity=0.162 Sum_probs=247.6
Q ss_pred eEeeHHHHHhcCccCCCCCCCCCC-CCeEEEEeccCCCCCccEEEecHHHHHHHHHhhh---cCcccCCCcEEEEeCChH
Q 007119 232 QILTYSNLLSQGRSNLQPFSPPKP-DDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT---LGTKFYPSDVYISYLPLA 307 (617)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~-~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~lPl~ 307 (617)
.+.+.+++.+.. +.......+ +|+++|+|||||||.||||++||+++.+...... ..+++.++|++++++|+.
T Consensus 64 P~~~~~~l~~~~---p~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 140 (436)
T 3qov_A 64 PFTTKSDMRANY---PFGLVAGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYG 140 (436)
T ss_dssp CCBCHHHHHHTT---TTTTCCSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCT
T ss_pred CCCCHHHHHhcC---CCccccCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccc
Confidence 345556665432 122234456 8999999999999999999999999977665543 235789999999999997
Q ss_pred HHHHHHH-HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q 007119 308 HIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQ 385 (617)
Q Consensus 308 h~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 385 (617)
|..+.+. .+.++..|+++++.+ +++..+++.|++++||+++++|+++..|.+.......
T Consensus 141 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------- 201 (436)
T 3qov_A 141 MFTGGLGFQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGI------------------- 201 (436)
T ss_dssp TCHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTC-------------------
T ss_pred cchhHHHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCC-------------------
Confidence 6666554 567899999999876 7999999999999999999999999998875322110
Q ss_pred HHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccc-cccCCCCCCCCCC
Q 007119 386 AMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGH 464 (617)
Q Consensus 386 ~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~-~~~~~~~~~~~~~ 464 (617)
.. ..+++|.+++||+++++++.+++++.||++++++||+||+++. +..... ....
T Consensus 202 ------~~---------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~---~~~g 257 (436)
T 3qov_A 202 ------DP---------------RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQ---EQNG 257 (436)
T ss_dssp ------CT---------------TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECT---TCSS
T ss_pred ------Cc---------------ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecC---CCCe
Confidence 00 0148999999999999999999999999999999999999654 332221 1123
Q ss_pred cCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCC------c-
Q 007119 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGG------R- 537 (617)
Q Consensus 465 vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG------~- 537 (617)
.|.|.++++++|+|++++..++.|+ .|||+|+|. |++.| .++||+|||+|+++++| +
T Consensus 258 ~~~~~~~~~v~i~d~~~g~~~~~g~---~Gel~v~~~------------~~~~~-~~~~y~TGDl~~~~~~gc~cG~~~~ 321 (436)
T 3qov_A 258 MHFWEDCYLVEIIDPETGEPVPEGE---IGELVLTTL------------DREMM-PLIRYRTRDLTRILPGKCPCGRTHL 321 (436)
T ss_dssp EEECTTTEEEEEECTTTCSBCSTTC---CEEEEEEES------------SCCSS-CCCSEEEEEEECEECSCCTTCCCSC
T ss_pred eEEccCceEEEEEECCCCCCCCCCC---ceEEEEecc------------CcCCc-eEEEEEcCCEEEEcCCCCCCCCCcc
Confidence 6677789999999988888888887 899999983 44556 78999999999999998 6
Q ss_pred --EEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCC---CCeEEEEEEeC---------HHHHHHHHHHc
Q 007119 538 --LKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVD---------QDALKAWAASE 603 (617)
Q Consensus 538 --l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~---------~~~~~~~~~~~ 603 (617)
++|+||+||+||+ +|++|+|.+||++|.+||+|.+++|++.++ .+.++|+|+++ .+++.++++++
T Consensus 322 ~il~i~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~ 400 (436)
T 3qov_A 322 RIDRIKGRSDDMFII-KGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELSDLSTDNYIELEKIRRDIIRQ 400 (436)
T ss_dssp EECCCCCBSSSCEEE-TTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHH
T ss_pred ccCcccCccCCEEEE-CCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEcCccccchhhHHHHHHHHHHH
Confidence 6999999999998 899999999999999999999999998764 36899999985 24566666554
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=4.4e-44 Score=381.71 Aligned_cols=309 Identities=17% Similarity=0.137 Sum_probs=246.8
Q ss_pred EeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhh---cCcccCCCcEEEEeCCh-HH
Q 007119 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT---LGTKFYPSDVYISYLPL-AH 308 (617)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~lPl-~h 308 (617)
+.+.+++.+... .......++++++|+|||||||.||||++||+++........ ..+++.++|++++.+|+ +|
T Consensus 70 ~~~~~~l~~~~~---~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 146 (437)
T 2y27_A 70 FTTKGDLRDSYP---FGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLF 146 (437)
T ss_dssp CBCHHHHHHTTT---TTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSS
T ss_pred CCCHHHHHhcCC---CccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEccccccc
Confidence 455666654321 123345678999999999999999999999999887654433 24678899999999998 78
Q ss_pred HHHHHHHHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHH
Q 007119 309 IYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM 387 (617)
Q Consensus 309 ~~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 387 (617)
..++...+.++..|+++++.+ +++..+++.|++++||+++++|+++..|.+......
T Consensus 147 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~---------------------- 204 (437)
T 2y27_A 147 TGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQG---------------------- 204 (437)
T ss_dssp HHHHHHHHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTT----------------------
T ss_pred ccchHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcC----------------------
Confidence 888877788899999998776 699999999999999999999999999877432110
Q ss_pred hcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccc-cccCCCCCCCCCCcC
Q 007119 388 LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGHVG 466 (617)
Q Consensus 388 ~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~-~~~~~~~~~~~~~vG 466 (617)
... ..+++|.+++||+++++++.+++++.||++++++||+||+++. ++...+.. ..+ .+
T Consensus 205 ---~~~---------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~-~~g-~~ 264 (437)
T 2y27_A 205 ---LDP---------------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVET-KDG-PT 264 (437)
T ss_dssp ---CCG---------------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTT-CSS-CE
T ss_pred ---CCc---------------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCC-CCc-ee
Confidence 000 0148999999999999999999999899999999999998433 33322211 112 55
Q ss_pred CCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEec-CCcE-----EE
Q 007119 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP-GGRL-----KI 540 (617)
Q Consensus 467 ~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~-dG~l-----~i 540 (617)
.|.++++++|+|++++..++.|+ .|||+|+| .|++.| .++||+|||+|++++ +|++ +|
T Consensus 265 ~~~~~~~~~i~d~~~g~~~~~g~---~Gel~v~~------------~t~~~~-~~~~y~TGDl~~~~~~~G~~~~~i~~i 328 (437)
T 2y27_A 265 IWEDHFYPEIIDPETGEVLPDGE---LGELVFTS------------LTKEAL-PIIRYRTRDLTRLLPGTARTMRRMEKI 328 (437)
T ss_dssp ECTTTEEEEEECTTTCCBCCTTC---CEEEEEEE------------SSCSSS-CCCSEEEEEEECEECCSSSSSCEECCC
T ss_pred EccCceEEEEEcCCCCCCCCCCC---ccEEEEec------------CCcCCc-hhheeecCCEEEEeCCCCCCccccCcc
Confidence 67789999999977788888776 89999998 245566 789999999999999 6986 99
Q ss_pred EecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCC---CCeEEEEEEeCH---------HHHHHHHHHc
Q 007119 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQ---------DALKAWAASE 603 (617)
Q Consensus 541 ~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~---------~~~~~~~~~~ 603 (617)
+||+||+||+ +|++|+|.+||++|.+||+|.+++|++.++ .+.++|+|++++ +++.++++++
T Consensus 329 ~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~ 402 (437)
T 2y27_A 329 TGRSDDMMIV-RGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVAKQALAYD 402 (437)
T ss_dssp CEEGGGCEEE-TTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTTCHHHHHHHHHHHHHH
T ss_pred ccccCCeEEE-CCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCccchhhhHHHHHHHHHHH
Confidence 9999999997 899999999999999999999998888542 357899998764 4566777654
No 35
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=7.5e-44 Score=380.60 Aligned_cols=310 Identities=15% Similarity=0.118 Sum_probs=247.6
Q ss_pred eEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhc---CcccCCCcEEEEeCCh-H
Q 007119 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL---GTKFYPSDVYISYLPL-A 307 (617)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~lPl-~ 307 (617)
.+.+.+++.+.. +.......++++++|+|||||||.||||++||+++......... .+++.++|++++.+|+ +
T Consensus 71 P~~~~~~l~~~~---p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~ 147 (443)
T 2y4o_A 71 PFSTKNDLRDNY---PFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGL 147 (443)
T ss_dssp CCBCHHHHHTTT---TTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSS
T ss_pred CCCcHHHHHhhC---CCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcc
Confidence 345667765432 11223456789999999999999999999999998876544332 4678899999999999 5
Q ss_pred HHHHHHHHHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 007119 308 HIYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (617)
Q Consensus 308 h~~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 386 (617)
|..++...+.++..|+++++.+ +++..+++.|+++++|+++++|+++..|.+.......
T Consensus 148 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~-------------------- 207 (443)
T 2y4o_A 148 FTGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGM-------------------- 207 (443)
T ss_dssp SHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTC--------------------
T ss_pred cccHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCC--------------------
Confidence 7777777788899999998876 7999999999999999999999999998774321100
Q ss_pred HhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccc-cccCCCCCCCCCCc
Q 007119 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGHV 465 (617)
Q Consensus 387 ~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~-~~~~~~~~~~~~~v 465 (617)
. ...+++|.+++||+++++++.+++++.||+++++.||+||+++. +....+.. ..+ .
T Consensus 208 -----~---------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~-~~g-~ 265 (443)
T 2y4o_A 208 -----D---------------PAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVET-KDG-P 265 (443)
T ss_dssp -----C---------------GGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTT-CCS-E
T ss_pred -----C---------------cccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCC-CCc-e
Confidence 0 00148999999999999999999999999999999999997443 33222211 112 4
Q ss_pred CCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecC-CcE-----E
Q 007119 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG-GRL-----K 539 (617)
Q Consensus 466 G~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d-G~l-----~ 539 (617)
+.|.++++++|+|++++..++.|+ .|||+|+|. |++.| .++||+|||+|+++++ |++ +
T Consensus 266 ~~~~~~~~~~i~d~~~g~~~~~G~---~Gel~v~~~------------t~~~~-p~~~y~TGDl~~~~~~cG~~~~~l~~ 329 (443)
T 2y4o_A 266 VIWEDHFYPEIIDPVTGEVLPDGS---QGELVFTSL------------TKEAM-PVIRYRTRDLTALLPPTARAMRRLAK 329 (443)
T ss_dssp EECTTTEEEEEECTTTCCBCCTTC---CEEEEEEES------------SCSSS-CCSSEEEEEEECEECCSSSSSCEECC
T ss_pred EEccCCeEEEEEcCCCCCCCCCCC---ceEEEEeCC------------CcccC-hhheeecCCEEEEcCCCCCCccccCc
Confidence 556789999999977788888776 899999982 45566 7899999999999999 997 8
Q ss_pred EEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCC---CCeEEEEEEeCH-----------HHHHHHHHHc
Q 007119 540 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQ-----------DALKAWAASE 603 (617)
Q Consensus 540 i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~-----------~~~~~~~~~~ 603 (617)
|+||+||+||+ +|++|+|.+||++|.+||+|.+++|++.++ .+.++|+|++++ +++.++++++
T Consensus 330 i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~l~~~l~~~ 406 (443)
T 2y4o_A 330 ITGRSDDMLIV-RGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHR 406 (443)
T ss_dssp CCEESSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cccccCCeEEE-CCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccccchhhHHHHHHHHHHHH
Confidence 99999999997 899999999999999999999999888542 357889999876 4567777664
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=9.4e-31 Score=272.27 Aligned_cols=236 Identities=16% Similarity=0.165 Sum_probs=175.6
Q ss_pred CCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhh---cCcccCCCcEEEEeCCh-HHHHHHHHHHHHHHhCcEEEEe
Q 007119 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT---LGTKFYPSDVYISYLPL-AHIYERANQVMTVYSGVAVGFY 328 (617)
Q Consensus 253 ~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~lPl-~h~~~~~~~~~~l~~G~~~~~~ 328 (617)
..++++++|+|||||||.||||+++|+++........ ...++.++|++++.+|+ +|.+++...+.++..|+ +++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 4678999999999999999999999999998887543 44678899999999999 99999988888899999 4444
Q ss_pred -cCChh-----------------------hHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q 007119 329 -QGDNM-----------------------KLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (617)
Q Consensus 329 -~~~~~-----------------------~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 384 (617)
.+++. .+++.++++++|++.++|+++..|++....
T Consensus 167 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~--------------------- 225 (369)
T 3hgu_A 167 IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEV--------------------- 225 (369)
T ss_dssp CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHH---------------------
T ss_pred ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhh---------------------
Confidence 36777 788899999999999999999998763110
Q ss_pred HHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHH-Hhh-CCceeccccccccccccccCCCCCCCC
Q 007119 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLK-ICF-GGRVTEGYGMTETSCLISQLDEGDNLS 462 (617)
Q Consensus 385 ~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~-~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~ 462 (617)
.....+++|.+++||+++++++.++++ +.| ++++++.||+||+++++.....
T Consensus 226 ---------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~----- 279 (369)
T 3hgu_A 226 ---------------------VLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI----- 279 (369)
T ss_dssp ---------------------HHHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-----
T ss_pred ---------------------hccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-----
Confidence 000013899999999999999999999 899 8999999999999876543221
Q ss_pred CCcCCC------CcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecC-
Q 007119 463 GHVGSP------NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG- 535 (617)
Q Consensus 463 ~~vG~p------~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d- 535 (617)
.++|.| .++++++|+|+++++.++.|+ .|||+|++.. ++.+ --+|+|||++.+.+.
T Consensus 280 ~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~---~GEl~vt~l~------------~~~~--l~ry~tgD~~~~~~~~ 342 (369)
T 3hgu_A 280 TSESQQVIYDSFSPFITYDVVDSITAQTVEYGE---RGNVIVTHLS------------PWAF--YPRVAERDTAIRLPGV 342 (369)
T ss_dssp CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTC---EEEEEEEEEE------------TTEE--EEEEEEEEEEEEECCS
T ss_pred ccCCCcccccCCCCCeEEEEECCCCCcCCCCCC---ceEEEEEEcC------------cccc--cccccCCceEEEecCC
Confidence 158999 999999999976888888887 9999999732 1111 124777887777543
Q ss_pred -C-------cEEEEecCCCeeecCCee
Q 007119 536 -G-------RLKIIDRKKNIFKLAQGE 554 (617)
Q Consensus 536 -G-------~l~i~gR~~d~ikl~~G~ 554 (617)
| .+..++|.++..|+ .|.
T Consensus 343 ~g~~~d~~~~v~~~~~~~~~~~i-~gv 368 (369)
T 3hgu_A 343 SGFAGDRLADIEPLKISEGRKVI-EGV 368 (369)
T ss_dssp TTCSSCEEEEEEECC------------
T ss_pred CCCcCcccccceeccccCCCcee-eec
Confidence 2 24556777777776 454
No 37
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.89 E-value=1.5e-07 Score=100.86 Aligned_cols=128 Identities=13% Similarity=0.166 Sum_probs=79.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh-CCcee-ccccccccccccccCCCCCCCCCCcCC-CCcC-eEEEEeecCCC------
Q 007119 413 VRFMGSGASPLSPDVLDFLKICF-GGRVT-EGYGMTETSCLISQLDEGDNLSGHVGS-PNAA-CEIKLVDVPEM------ 482 (617)
Q Consensus 413 lr~i~~gga~l~~~~~~~~~~~~-~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~-~~v~ivd~~~~------ 482 (617)
+..+++||. ..-...++..+ +.+++ ..|+.||+.. .....+. ..++..+. .+|+ .=+..++.++.
T Consensus 307 l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~-gi~~~p~-~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~~ 381 (609)
T 4b2g_A 307 LDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECYF-GLNLNPM-SKPSEVSYTIMPNMAYFEFLPHEHSSIPLSR 381 (609)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCEE-EECSCTT-SCGGGCCEEECTTSCEEEEEEGGGTTSCCCS
T ss_pred EEEEccCCh---HHHHHHHHHHcCCCccccCcccccceee-eeecCCC-CCcccCceeecCCcEEEEEEecccccccccc
Confidence 555666763 33334555544 56766 9999999743 2222111 11122222 1222 22334443332
Q ss_pred ---------CCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEec----CCcEEEEecCCCeee
Q 007119 483 ---------NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP----GGRLKIIDRKKNIFK 549 (617)
Q Consensus 483 ---------~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~----dG~l~i~gR~~d~ik 549 (617)
..+..| ..+||.|... .|.|+ |++||+.+++. ...+.|+||.+++|.
T Consensus 382 ~~~~~~v~l~eVe~G---~~YelViTt~---~GL~R--------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~ 441 (609)
T 4b2g_A 382 DSPPRLVDLAHVEVG---KEYELVITTY---AGLYR--------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLS 441 (609)
T ss_dssp SSCCCCEEGGGCCTT---CEEEEEEECT---TSCCS--------------EEEEEEEEEEEEETTEEEEEEEEETTCCBC
T ss_pred CCCCccccHhHcCCC---CeEEEehhhh---hhhhh--------------eecCCEEEEeecCCCCcEEEEEEecCCeEE
Confidence 112223 3789999653 34442 99999999974 468999999999999
Q ss_pred cCCeeeechHHHHHHHh
Q 007119 550 LAQGEYIAAEKIENVYA 566 (617)
Q Consensus 550 l~~G~~i~p~~IE~~l~ 566 (617)
+ .|++|++++||+++.
T Consensus 442 ~-~Geki~~~~v~~av~ 457 (609)
T 4b2g_A 442 I-DSDKTDEAELQKAVD 457 (609)
T ss_dssp S-SSCCBCHHHHHHHHH
T ss_pred c-cccCCCHHHHHHHHH
Confidence 7 899999999999996
No 38
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.78 E-value=8.8e-08 Score=102.42 Aligned_cols=133 Identities=14% Similarity=0.167 Sum_probs=80.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh-CCcee-ccccccccccccccCCCCCCCCCCcCCC-CcC-eEEEEeecCCCC---C-
Q 007119 413 VRFMGSGASPLSPDVLDFLKICF-GGRVT-EGYGMTETSCLISQLDEGDNLSGHVGSP-NAA-CEIKLVDVPEMN---Y- 484 (617)
Q Consensus 413 lr~i~~gga~l~~~~~~~~~~~~-~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~p-~~~-~~v~ivd~~~~~---~- 484 (617)
+..+++||. ..-...++..+ +.+++ ..|+.||+.. .....+ ...+..+|.. +|+ +=+..++.++.. .
T Consensus 302 l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~-gi~~~p-~~~~~~~~~~L~~~~~ffEFip~~~~~~~~~v 376 (581)
T 4eql_A 302 IETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETTF-GINLDP-LCKPEDVSYTFMPNMSYFEFIPMDGGDKNDVV 376 (581)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCEE-EECSCT-TSCGGGCCEEECTTSSEEEEEECSTTCCSSCE
T ss_pred EEEEcCCCh---HHHHHHHHHHcCCCccccCcccccccee-eeccCC-CCCcccCceeecCCcEEEEEEeccccCCCcEe
Confidence 566667773 33344555544 57777 9999999642 221111 1111122221 222 223444433221 0
Q ss_pred -CCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEec----CCcEEEEecCCCeeecCCeeeechH
Q 007119 485 -TSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP----GGRLKIIDRKKNIFKLAQGEYIAAE 559 (617)
Q Consensus 485 -~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~----dG~l~i~gR~~d~ikl~~G~~i~p~ 559 (617)
...-+.+..+||.|+..+ |-| -|++||+.++.. ...+.|+||.|+++.+ .||+++++
T Consensus 377 ~l~eVe~G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-~Gekl~~~ 438 (581)
T 4eql_A 377 DLEDVKLGCTYEPVVTNFA---GLY--------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-DSDKTNEE 438 (581)
T ss_dssp EGGGCCTTCEEEEEEECSS---SCC--------------SEECCEEEEEEEEETTEEEEEEEEETTEEECS-SSCCEEHH
T ss_pred CHHHcCCCceEEEEEeecc---cee--------------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEe-eeeECCHH
Confidence 011112237899998642 222 189999999985 3579999999999997 89999999
Q ss_pred HHHHHHhcC
Q 007119 560 KIENVYAKC 568 (617)
Q Consensus 560 ~IE~~l~~~ 568 (617)
+||+++.+.
T Consensus 439 ~v~~al~~a 447 (581)
T 4eql_A 439 DLFKAVSQA 447 (581)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999999744
No 39
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.70 E-value=2.3e-07 Score=98.88 Aligned_cols=164 Identities=14% Similarity=0.103 Sum_probs=93.1
Q ss_pred CceE---EEEEcCCCCcHHHHHHHHHhh-CCcee-ccccccccccccccCCCCCCCCCCcCC-CCcCe-EEEEeecCCC-
Q 007119 411 GRVR---FMGSGASPLSPDVLDFLKICF-GGRVT-EGYGMTETSCLISQLDEGDNLSGHVGS-PNAAC-EIKLVDVPEM- 482 (617)
Q Consensus 411 ~~lr---~i~~gga~l~~~~~~~~~~~~-~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~~-~v~ivd~~~~- 482 (617)
++++ .+++|+. ..-...++..+ +.+++ .+|+.||+.. .....+ ...++.++. .+|+. =+..++.++.
T Consensus 302 Pnl~~i~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~-gi~~~p-~~~~~~~~~~L~p~~~ffEFiP~~~~~ 376 (581)
T 4epl_A 302 PNAKYVYGIMTGSM---EPYVPKLRHYAGDLPLVSHDYGSSEGWI-AANVTP-RLSPEEATFAVIPNLGYFEFLPVSETG 376 (581)
T ss_dssp TTCCCEEEECSGGG---GGGHHHHHHHHTTSCEEECCEEETTEEE-EECCCT-TSCTTTCCEEECTTSCEEEEEEC----
T ss_pred CCCceEEEEeCCCh---HHHHHHHHHHcCCCccccCceeccceee-eeecCC-CCCccccceeecCCcEEEEEEeccccc
Confidence 4664 4444543 23334555555 56776 9999999743 222212 122222222 22332 2233332221
Q ss_pred ---------CCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecC----CcEEEEecCCCeee
Q 007119 483 ---------NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG----GRLKIIDRKKNIFK 549 (617)
Q Consensus 483 ---------~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d----G~l~i~gR~~d~ik 549 (617)
..+..| ..+||.|...+ |-| -|++||+.++..- ..+.|+||.++++.
T Consensus 377 ~~~~~~v~l~eve~G---~~YelviTt~~---GL~--------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~ 436 (581)
T 4epl_A 377 EGEEKPVGLTQVKIG---EEYEVVITNYA---GLY--------------RYRLGDVVKVIGFYNNTPQLKFICRRNLILS 436 (581)
T ss_dssp ---CCCEEGGGCCTT---CEEEEEEESTT---SCS--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBC
T ss_pred CCCCceeeHHHcCCC---CeEEEEEeecc---cee--------------eEEcCCEEEEecccCCCcEEEEEeecCCeEE
Confidence 112233 37899998642 322 1899999998742 46999999999999
Q ss_pred cCCeeeechHHHHHHHhc------CCC--cceEEEEeeCCC--CeEEEEEE----eCHHHHHHHH
Q 007119 550 LAQGEYIAAEKIENVYAK------CKF--VGQCFVYGDSFN--SALVAIVS----VDQDALKAWA 600 (617)
Q Consensus 550 l~~G~~i~p~~IE~~l~~------~p~--V~~~~V~g~~~~--~~~va~vv----~~~~~~~~~~ 600 (617)
+ .|+++++.+||+++.+ ..+ |.+-.++.+... .+-+.++. |+++.+.++|
T Consensus 437 ~-~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~hyv~~wE~~~~~~~~~l~~~~ 500 (581)
T 4epl_A 437 I-NIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHYAIFWEISGETNEDVLQDCC 500 (581)
T ss_dssp S-SSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSCEEEEEEEESSCCCHHHHHHHH
T ss_pred e-eeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCCcEEEEEeecCCCCHHHHHHHH
Confidence 7 8999999999999964 223 555555554322 34444445 3445566654
No 40
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=98.51 E-value=1.3e-07 Score=78.71 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=42.9
Q ss_pred ecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC
Q 007119 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD 592 (617)
Q Consensus 542 gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~ 592 (617)
.|.|||||+ +|.||+|.+||+++.+||+|.+++|++.++. +.++++|+..
T Consensus 1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~ 53 (109)
T 3lax_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELS 53 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEe
Confidence 389999997 8999999999999999999999999886543 4677777753
No 41
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=98.48 E-value=1.3e-07 Score=78.69 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=42.1
Q ss_pred ecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCC---CCeEEEEEEe
Q 007119 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSV 591 (617)
Q Consensus 542 gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~ 591 (617)
||.||+|++ +|+||+|.+||+++.+||+|.++++++.++ .+.++++|++
T Consensus 1 GR~~D~Iiv-~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~ 52 (109)
T 3gxs_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL 52 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCccCEEEE-CCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE
Confidence 799999997 899999999999999999999888776543 2467888875
No 42
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=93.31 E-value=0.96 Score=46.76 Aligned_cols=123 Identities=11% Similarity=0.069 Sum_probs=89.9
Q ss_pred cCCCccEEEEEeecCccCc--eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--HhHHHHHHHHHhcCCeEEe
Q 007119 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNR--PEWLIVDHACSAYSFISVP 167 (617)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vp 167 (617)
.++.++++.. ..|+.|. ...+|.+.+...+..++..+...|+.++|++..+.+-. ...+...++++..|+..++
T Consensus 88 ~~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 88 PQDRISRIHA--SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp CGGGCCEEEE--CCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred ChhHeEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 3456665543 2566554 34579999988888888888888999999999888753 3334557888999999887
Q ss_pred cCCCCCHHHHHHHHHhccccEEEecccchHHHHhhcc------CCCCceEEEEECC
Q 007119 168 LYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (617)
Q Consensus 168 l~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~------~~~~~~~iv~~~~ 217 (617)
+.. ..++.+...+++.++.++++.+..+..+.+... ..+.++.+++-++
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 220 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAE 220 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESS
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCc
Confidence 665 478899999999999999999887776655432 1246777666543
No 43
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=93.15 E-value=1 Score=46.54 Aligned_cols=123 Identities=11% Similarity=0.082 Sum_probs=89.9
Q ss_pred cCCCccEEEEEeecCccCce--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--HhHHHHHHHHHhcCCeEEe
Q 007119 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNR--PEWLIVDHACSAYSFISVP 167 (617)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vp 167 (617)
.++.++++.. ..|+.|.. ..+|.+.+...+..++..+...|+.++|++..+++-+ ...+...++++..|+..++
T Consensus 90 ~~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 90 PREQVVRVHA--SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp CGGGCCEEEE--ECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred ChhheEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 3455665433 26666653 4578999988888888888888999999999888753 3344567888899999887
Q ss_pred cCCCCCHHHHHHHHHhccccEEEecccchHHHHhhcc------CCCCceEEEEECC
Q 007119 168 LYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (617)
Q Consensus 168 l~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~------~~~~~~~iv~~~~ 217 (617)
+... .++.+...+++.++.++++.+..+..+.+... ..+.++.+++-++
T Consensus 168 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 222 (443)
T 2y4o_A 168 MSGG-QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAE 222 (443)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESS
T ss_pred CCCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCC
Confidence 7654 78889999999999999999887776655322 1256777766543
No 44
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=92.72 E-value=0.86 Score=47.08 Aligned_cols=121 Identities=13% Similarity=0.048 Sum_probs=90.2
Q ss_pred CCccEEEEEeecCccCc--eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--HhHHHHHHHHHhcCCeEEecC
Q 007119 94 DYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNR--PEWLIVDHACSAYSFISVPLY 169 (617)
Q Consensus 94 d~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vpl~ 169 (617)
+.++++.. ..|+.|. ...+|.+.+...+..++..+...|+.++|++..+.+-+ ...+..+++++..|+..++..
T Consensus 86 ~~~a~i~~--TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 163 (436)
T 3qov_A 86 RDGVRIHS--SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA 163 (436)
T ss_dssp HHEEEEEE--CSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred CCeEEEEE--CCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence 45565443 2566554 34579999998888888888888999999999988743 444556788899999988765
Q ss_pred CCCCHHHHHHHHHhccccEEEecccchHHHHhhcc------CCCCceEEEEECC
Q 007119 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (617)
Q Consensus 170 ~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~------~~~~~~~iv~~~~ 217 (617)
. ..++.+...+++.++.++++.+..+..+.+... .++.++.+++-++
T Consensus 164 ~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 216 (436)
T 3qov_A 164 A-GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAE 216 (436)
T ss_dssp S-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESS
T ss_pred C-CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCC
Confidence 4 467889999999999999999887776655422 1456777776554
No 45
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=82.32 E-value=23 Score=37.31 Aligned_cols=120 Identities=9% Similarity=-0.060 Sum_probs=85.6
Q ss_pred cCCCccEEEEEeecCccCc--eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH--HH-HHHHHHhcCCeEE
Q 007119 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW--LI-VDHACSAYSFISV 166 (617)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~--~~-~~lA~~~~G~v~v 166 (617)
.|+.+|++.. ..|++|. ...+|.+.+...+..... ..++.++|++..++|-...+ .. .+++++..|+..+
T Consensus 180 ~~~d~a~i~~--TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 180 KSSDVAFLQL--SGGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CTTSEEEEEE--CCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CcCceEEEEe--CCCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 4677777654 2565553 345799888776655544 34788999998888866443 22 4788899999988
Q ss_pred ecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhc----cCCCCceEEEEECC
Q 007119 167 PLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL----SEVPTVRLIVVIGG 217 (617)
Q Consensus 167 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~----~~~~~~~~iv~~~~ 217 (617)
... ...++.+...+++.++.+++..+..+..+.+.. ..+++++.+++-++
T Consensus 255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~ 308 (539)
T 1mdb_A 255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGA 308 (539)
T ss_dssp ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESS
T ss_pred ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCC
Confidence 654 567889999999999999999888777665432 24567887776554
No 46
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=81.84 E-value=23 Score=36.89 Aligned_cols=119 Identities=15% Similarity=0.028 Sum_probs=84.2
Q ss_pred cCCCccEEEEEeecCccCc--eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH-HHHHHHHHhcCCeEEec
Q 007119 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW-LIVDHACSAYSFISVPL 168 (617)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl 168 (617)
.|+.+|++.. ..|+.|. ...+|.+.+...+..+.. ..++.++|++..++|-...+ +..+++++..|+..+..
T Consensus 161 ~~~d~a~i~~--TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMF--TSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEE--CCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 4677777654 2566554 345788888777666554 34889999998888765433 33467788899988776
Q ss_pred CCCCCHHHHHHHHHhccccEEEecccchHHHHhhccC-CCCceEEEEEC
Q 007119 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSE-VPTVRLIVVIG 216 (617)
Q Consensus 169 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~-~~~~~~iv~~~ 216 (617)
. ...++.+...+++.++.++++.+..+..+.+.... ...++.++.-+
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG 283 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGG 283 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECS
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeC
Confidence 5 57899999999999999999998887777665432 22566665533
No 47
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=81.05 E-value=7.3 Score=38.86 Aligned_cols=105 Identities=12% Similarity=-0.043 Sum_probs=70.6
Q ss_pred cCCCccEEEEEeecCccCce--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--HhHHHHHHHHHhcCCeEEe
Q 007119 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNR--PEWLIVDHACSAYSFISVP 167 (617)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vp 167 (617)
.++.++.+.. ..|+.|.. ..+|.+.+...+..++..+...|+.++|++..+++-+ .--+...+++...|+++++
T Consensus 89 ~~~~~a~i~~--TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~ 166 (369)
T 3hgu_A 89 PADSHPQVYE--SGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS 166 (369)
T ss_dssp CTTCCCEEEE--ECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred CccccEEEEE--CCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence 3556566544 26666543 3468888888887777777778999999999988862 2223445556889996555
Q ss_pred cCCCCCHH-----------------------HHHHHHHhccccEEEecccchHHHH
Q 007119 168 LYDTLGPD-----------------------AVKYIVNHASVQAVFCVPQTLNSLL 200 (617)
Q Consensus 168 l~~~~~~~-----------------------~l~~il~~~~~~~vi~~~~~~~~l~ 200 (617)
.. ..+. .+..++++.++.++++.+..+..+.
T Consensus 167 ~~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~ 220 (369)
T 3hgu_A 167 ID--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELL 220 (369)
T ss_dssp CC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHT
T ss_pred cc--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 43 3444 6666889999999998877665554
No 48
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=80.90 E-value=10 Score=40.31 Aligned_cols=119 Identities=13% Similarity=0.053 Sum_probs=83.0
Q ss_pred CCccEEEEEeecCccCc--eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH--HHHHHHHHhcCCeEEecC
Q 007119 94 DYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW--LIVDHACSAYSFISVPLY 169 (617)
Q Consensus 94 d~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~G~v~vpl~ 169 (617)
+.+|++.. ..|+.|. ...+|.+.+...+......+...++.++|++..+++-...+ ...+++++ .|+..+.+.
T Consensus 192 ~d~a~i~~--TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~ 268 (548)
T 2d1s_A 192 EQVALIMN--SSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT 268 (548)
T ss_dssp TCEEEEEC--CSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred CCEEEEEe--CCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence 66776654 2565553 34579998877666555443335788999988888766443 33456777 999888765
Q ss_pred CCCCHHHHHHHHHhccccEEEecccchHHHHhhcc----CCCCceEEEEEC
Q 007119 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS----EVPTVRLIVVIG 216 (617)
Q Consensus 170 ~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~----~~~~~~~iv~~~ 216 (617)
...++.+...+++.++.++++.+..+..+.+... .++.++.++.-+
T Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG 318 (548)
T 2d1s_A 269 -KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGG 318 (548)
T ss_dssp -CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECS
T ss_pred -CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcC
Confidence 5788999999999999999999887777665321 345677666533
No 49
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=79.99 E-value=19 Score=37.70 Aligned_cols=118 Identities=15% Similarity=0.079 Sum_probs=80.4
Q ss_pred CCCccEEEEEeecCccCc--eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHH--HHHHHHhcCCeEEec
Q 007119 93 RDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI--VDHACSAYSFISVPL 168 (617)
Q Consensus 93 pd~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~--~~lA~~~~G~v~vpl 168 (617)
|+.+|++.. ..|+.|. ...+|.+.+...+..++..+ ++.++|++..+++-....-. .+++++ .|+..+..
T Consensus 169 ~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~ 242 (517)
T 3r44_A 169 GDDNLFIMY--TSGTTGHPKGVVHTHESVHSAASSWASTI---DVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM 242 (517)
T ss_dssp TTSEEEEEE--ECC---CCEEEEEEHHHHHHHHHHHHHHS---CCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC
T ss_pred CCCeEEEEE--CCcccccCceeeeeHHHHHHHHHHHHHhc---CCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe
Confidence 566666544 2666554 34579988887776665544 88999999988887654433 245555 88888766
Q ss_pred CCCCCHHHHHHHHHhccccEEEecccchHHHHhhc----cCCCCceEEEEECC
Q 007119 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL----SEVPTVRLIVVIGG 217 (617)
Q Consensus 169 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~----~~~~~~~~iv~~~~ 217 (617)
+...++.+...+++.++.++.+.+..+..+.+.. ..++.++.++.-++
T Consensus 243 -~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe 294 (517)
T 3r44_A 243 -PQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGA 294 (517)
T ss_dssp -SSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSS
T ss_pred -CCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCC
Confidence 4578899999999999999999888776665432 24567777666443
No 50
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=79.46 E-value=19 Score=37.96 Aligned_cols=120 Identities=13% Similarity=0.037 Sum_probs=84.2
Q ss_pred cCCCccEEEEEeecCccCc--eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHH---HHHHHHhcCCeEE
Q 007119 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI---VDHACSAYSFISV 166 (617)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~---~~lA~~~~G~v~v 166 (617)
.++.+|++.. ..|+.|. ...+|.+.+...+..++.. .++.++|++..++|-...+-. .+++++..|+..+
T Consensus 189 ~~~d~a~i~~--TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 263 (544)
T 3o83_A 189 PADEVAFFQL--SGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVV 263 (544)
T ss_dssp CTTSEEEEEE--CCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CccceEEEEE--CCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEE
Confidence 3567777654 2565554 3457999888777665544 488999999998876654433 4788888999887
Q ss_pred ecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhcc----CCCCceEEEEECC
Q 007119 167 PLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS----EVPTVRLIVVIGG 217 (617)
Q Consensus 167 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~----~~~~~~~iv~~~~ 217 (617)
... ...+..+...+++.++.++++.+..+..+.+... .++.++.+++-++
T Consensus 264 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~ 317 (544)
T 3o83_A 264 MAP-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGA 317 (544)
T ss_dssp ECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESS
T ss_pred ECC-CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCC
Confidence 665 4578888899999999999998887766655432 3466777776554
No 51
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=77.76 E-value=11 Score=37.54 Aligned_cols=120 Identities=15% Similarity=0.095 Sum_probs=79.0
Q ss_pred HHhcCCCccEEEEEeecCccCce--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH-HHHHHHHHhcCCeE
Q 007119 89 VDTFRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW-LIVDHACSAYSFIS 165 (617)
Q Consensus 89 a~~~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~ 165 (617)
.+-++|.+|++.. ..|+.|.. ..+|++.+...+..++.. .++.++|++..++|-.... +..++.++..|+..
T Consensus 32 ~~w~~d~~a~Il~--TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~ 106 (358)
T 4gs5_A 32 EKWLGGAREFVLH--TSGSTGMPKPITVTRAQLAASAAMTGKA---LSLGPGTRALVCLNVGYIAGLMMLVRGMELDWEL 106 (358)
T ss_dssp HHHHHTCSEEEEE--EECTTSSEEEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEE
T ss_pred hccCCCCCEEEEE--CCcccccCcEEEEeHHHHHHHHHHHHHH---hCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEE
Confidence 3445688887754 26666653 457999888776665543 4889999999888765432 34456667778877
Q ss_pred EecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhcc---CCCCceEEEEEC
Q 007119 166 VPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS---EVPTVRLIVVIG 216 (617)
Q Consensus 166 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~---~~~~~~~iv~~~ 216 (617)
+...+.... ...+++.++..+++.+..+..+.+... .+++++.+++-+
T Consensus 107 ~~~~~~~~~---~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG 157 (358)
T 4gs5_A 107 TVTEPTANP---LAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGG 157 (358)
T ss_dssp EEECCCSCT---TTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECS
T ss_pred EecCccccH---HHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEcc
Confidence 776665432 346778899999988877766655332 345566665533
No 52
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=76.28 E-value=14 Score=38.55 Aligned_cols=119 Identities=15% Similarity=0.097 Sum_probs=81.8
Q ss_pred cCCCccEEEEEeecCccCc--eeEEeHHHHHHHHHHHHHHHHHcCC--CCCCEEEEEcCCCHhHH--HHHHHHHhcCCeE
Q 007119 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGI--SKGSCIGLYFVNRPEWL--IVDHACSAYSFIS 165 (617)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv--~~gd~V~i~~~n~~e~~--~~~lA~~~~G~v~ 165 (617)
.|+.+|++.. ..|+.|. ...+|.+.+...+..+.. ..++ .++|++..++|-....- ..+++++..|+..
T Consensus 151 ~~~~~a~i~~--TSGTTG~PKgV~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~ 225 (504)
T 1t5h_X 151 EPAQPAFIFY--TSGTTGLPKAAIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTY 225 (504)
T ss_dssp CTTSEEEEEE--CCC---CCCEEEEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEE
T ss_pred CCCCeEEEEe--CCCCCCCCCEEEecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceE
Confidence 4677777654 2565554 345788888766655543 3467 77888888887664432 4578888999998
Q ss_pred EecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhc-c-----CCCCceEEEEEC
Q 007119 166 VPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL-S-----EVPTVRLIVVIG 216 (617)
Q Consensus 166 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~-~-----~~~~~~~iv~~~ 216 (617)
+.... ..++.+...+++.++.+++..+..+..+.+.. . .+++++.++.-+
T Consensus 226 v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG 281 (504)
T 1t5h_X 226 VVVEE-FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAG 281 (504)
T ss_dssp EECSS-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECC
T ss_pred EeCCC-CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcC
Confidence 87654 67888999999999999999988877776543 1 345677666543
No 53
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=75.58 E-value=17 Score=38.50 Aligned_cols=122 Identities=11% Similarity=0.073 Sum_probs=81.2
Q ss_pred CCCccEEEEEeecCccCc--eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH-HHHHHHHHhcCCeEEecC
Q 007119 93 RDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW-LIVDHACSAYSFISVPLY 169 (617)
Q Consensus 93 pd~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl~ 169 (617)
++.+|++.. ..|+.|. ...+|.+.+...+......+...++.++|++..+++-...+ +...++++..|+..+.+.
T Consensus 189 ~~d~a~i~~--TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~ 266 (550)
T 3rix_A 189 DKTIALIMN--SSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY 266 (550)
T ss_dssp TTSEEEEEE--C-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS
T ss_pred CCCEEEEEE--CCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC
Confidence 355666544 2555443 34578888776655544444445788999998888766433 345667788999888764
Q ss_pred CCCCHHHHHHHHHhccccEEEecccchHHHHhhcc----CCCCceEEEEECC
Q 007119 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS----EVPTVRLIVVIGG 217 (617)
Q Consensus 170 ~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~----~~~~~~~iv~~~~ 217 (617)
...++.+...+++.++.++++.+..+..+.+... .++.++.+++-++
T Consensus 267 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~ 317 (550)
T 3rix_A 267 -RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGA 317 (550)
T ss_dssp -SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSS
T ss_pred -CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecC
Confidence 5788899999999999999999887776655422 3567777766443
No 54
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=75.16 E-value=21 Score=37.36 Aligned_cols=120 Identities=8% Similarity=-0.015 Sum_probs=83.4
Q ss_pred cCCCccEEEEEeecCccCce--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH-HHHHHHHHhcCCeEEec
Q 007119 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW-LIVDHACSAYSFISVPL 168 (617)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl 168 (617)
.++.+|++.. ..|+.|.. ..+|.+.+...+..+.. ..++.++|++..+++-+..+ +..+++++..|+..+.+
T Consensus 141 ~~~~~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 215 (511)
T 3e7w_A 141 KEHETFYIIY--TSGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCV 215 (511)
T ss_dssp CTTSEEEEEE--ECCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEc
Confidence 3566776644 26665543 45788888776655544 35788999999988876443 34578889999988776
Q ss_pred CCC--CCHHHHHHHHHhccccEEEecccchHHHHhhcc----CCCCceEEEEEC
Q 007119 169 YDT--LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS----EVPTVRLIVVIG 216 (617)
Q Consensus 169 ~~~--~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~----~~~~~~~iv~~~ 216 (617)
... ..++.+...+++.++.+++..+..+..+..... .++.++.++.-+
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G 269 (511)
T 3e7w_A 216 TKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCG 269 (511)
T ss_dssp CHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECS
T ss_pred ChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEec
Confidence 543 467888899999999999998887766654322 245566666544
No 55
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=74.35 E-value=46 Score=35.69 Aligned_cols=119 Identities=13% Similarity=-0.013 Sum_probs=83.5
Q ss_pred CCCccEEEEEeecCccCc--eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH--HH-HHHHHHhcCCeEEe
Q 007119 93 RDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW--LI-VDHACSAYSFISVP 167 (617)
Q Consensus 93 pd~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~--~~-~~lA~~~~G~v~vp 167 (617)
|+.+|++.. ..|++|. ...+|.+.+...+...... .++.++|++..+++-...+ .. .+++++..|+..+.
T Consensus 183 ~~~~a~ii~--TSGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~ 257 (617)
T 3rg2_A 183 ADEVAYFQL--SGGTTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVL 257 (617)
T ss_dssp TTSEEEEEE--CCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEE
T ss_pred CCCeEEEEE--CCCcCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEE
Confidence 567777654 2565554 3457888887666655443 4788999999998855443 32 47888888998887
Q ss_pred cCCCCCHHHHHHHHHhccccEEEecccchHHHHhhcc------CCCCceEEEEECC
Q 007119 168 LYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (617)
Q Consensus 168 l~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~------~~~~~~~iv~~~~ 217 (617)
... ..+..+...+++.++.++.+....+..+.+... .++.++.+++-++
T Consensus 258 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe 312 (617)
T 3rg2_A 258 AAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGA 312 (617)
T ss_dssp CSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESS
T ss_pred eCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCC
Confidence 654 577888889999999999998877766654321 4567787776554
No 56
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=73.93 E-value=46 Score=34.60 Aligned_cols=118 Identities=8% Similarity=-0.013 Sum_probs=77.6
Q ss_pred cCCCccEEEEEeecCccCce--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHH--HHHHHHHhcCCeEEe
Q 007119 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL--IVDHACSAYSFISVP 167 (617)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~v~vp 167 (617)
.++.+|++.. ..|+.|.. ..+|.+.+...+..+.. ..++.++|++..+++-...+- ..+.+++..|..+++
T Consensus 158 ~~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~ 232 (509)
T 3ivr_A 158 GAADGFVIIH--TAAVGGRPRGALISQGNLLIAQSSLVD---AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIA 232 (509)
T ss_dssp CTTSEEEEEE--EEC--CCEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CccccEEEEe--CCCCCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEe
Confidence 4667776644 25665543 35788888776666554 348899999998888664432 333344455555444
Q ss_pred cCCCCCHHHHHHHHHhccccEEEecccchHHHHhhc--cCCCCceEEEEEC
Q 007119 168 LYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL--SEVPTVRLIVVIG 216 (617)
Q Consensus 168 l~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~--~~~~~~~~iv~~~ 216 (617)
. ...++.+...+++.++.+++.....+..+.+.. ..++.++.++.-+
T Consensus 233 -~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~l~~lr~~~~~g 281 (509)
T 3ivr_A 233 -A-KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTGLD 281 (509)
T ss_dssp -S-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCCGGGGTTCCEEEEEC
T ss_pred -c-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcccccchhhhheecccC
Confidence 3 678999999999999999999888777776543 2345566665533
No 57
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=73.87 E-value=16 Score=38.13 Aligned_cols=120 Identities=11% Similarity=0.015 Sum_probs=81.1
Q ss_pred cCCCccEEEEEeecCccCce--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH-HHHHHHHHhcCCeEEec
Q 007119 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW-LIVDHACSAYSFISVPL 168 (617)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl 168 (617)
.++.+|++.. ..|+.|.. ..+|.+.+...+..... ..++.++|++..+++-+... +..+++++..|+..+.+
T Consensus 142 ~~~d~a~i~~--TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 216 (512)
T 3fce_A 142 KGDENFYIIY--TSGSTGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAI 216 (512)
T ss_dssp CTTSEEEEEE--ECC----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEEC
Confidence 4566776654 26665543 45788888766655443 35889999999988866433 34578889999998877
Q ss_pred CCC--CCHHHHHHHHHhccccEEEecccchHHHHhhcc----CCCCceEEEEEC
Q 007119 169 YDT--LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS----EVPTVRLIVVIG 216 (617)
Q Consensus 169 ~~~--~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~----~~~~~~~iv~~~ 216 (617)
... ..++.+...+++.++.++++.+..+..+..... .++.++.++.-+
T Consensus 217 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G 270 (512)
T 3fce_A 217 DKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCG 270 (512)
T ss_dssp CHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECS
T ss_pred CHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEec
Confidence 653 467889999999999999998877666544322 245677666644
No 58
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=72.33 E-value=22 Score=37.80 Aligned_cols=121 Identities=11% Similarity=-0.019 Sum_probs=81.8
Q ss_pred cCCCccEEEEEeecCccCce--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHH--HHHHHHHhcCCeEEe
Q 007119 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL--IVDHACSAYSFISVP 167 (617)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~v~vp 167 (617)
.|+.+|++.. ..|++|.. ..+|.+ +...... ......++.++|++..+++-....- ..+++++..|+..+.
T Consensus 204 ~~~d~a~i~~--TSGTTG~PKgV~~sh~-~~~~~~~--~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~ 278 (570)
T 3c5e_A 204 GSQEASAIYF--TSGTSGLPKMAEHSYS-SLGLKAK--MDAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFV 278 (570)
T ss_dssp BTTSEEEEEE--CCCSSSSCCEEEEEHH-HHHHHHH--HHTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEE
T ss_pred CCCCcEEEEE--CCCCCCCCCEEEechH-HHHhhhh--hhhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEE
Confidence 4566777654 25665543 356887 4331111 1124468899999988887765443 346788888988877
Q ss_pred cCC-CCCHHHHHHHHHhccccEEEecccchHHHHhhc---cCCCCceEEEEECC
Q 007119 168 LYD-TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL---SEVPTVRLIVVIGG 217 (617)
Q Consensus 168 l~~-~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~---~~~~~~~~iv~~~~ 217 (617)
... ...++.+...+++.++.+++..+..+..+.+.. ..++.++.++.-++
T Consensus 279 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe 332 (570)
T 3c5e_A 279 HLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGE 332 (570)
T ss_dssp ECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESS
T ss_pred ecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCC
Confidence 654 678999999999999999999988777776532 13466777776554
No 59
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=72.09 E-value=21 Score=38.77 Aligned_cols=122 Identities=11% Similarity=0.023 Sum_probs=83.1
Q ss_pred cCCCccEEEEEeecCccCcee--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHH--HHHHHHHhcCCeEEe
Q 007119 92 FRDYKYLGTRVRVDGTVGEYK--WMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL--IVDHACSAYSFISVP 167 (617)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~~--~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~v~vp 167 (617)
.++.++++.. ..|++|..+ .+|.+.+...+.... -...+++++|++...++-+...- ..+++++..|++.+.
T Consensus 254 ~~~d~a~ily--TSGTTG~PKgV~~sh~~~~~~~~~~~--~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl 329 (652)
T 1pg4_A 254 NAEDPLFILY--TSGSTGKPKGVLHTTGGYLVYAATTF--KYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLM 329 (652)
T ss_dssp ETTSEEEEEE--ECCSSSSCEEEEEESHHHHHHHHHHH--HHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEE
T ss_pred CCCCCEEEEe--ccCCCCCCceEEECchHHHHHHHHHH--HHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEE
Confidence 3566766644 266666543 467776654332211 12357899999888877665443 446789999999887
Q ss_pred cCCC---CCHHHHHHHHHhccccEEEecccchHHHHhhcc------CCCCceEEEEECC
Q 007119 168 LYDT---LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (617)
Q Consensus 168 l~~~---~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~------~~~~~~~iv~~~~ 217 (617)
.... ..++.+..++++.++.++++.+..+..+.+... .+++++.++.-++
T Consensus 330 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe 388 (652)
T 1pg4_A 330 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGE 388 (652)
T ss_dssp ECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESS
T ss_pred ECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecC
Confidence 7642 467889999999999999999888777765432 3567887777654
No 60
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=71.17 E-value=21 Score=37.71 Aligned_cols=122 Identities=15% Similarity=-0.020 Sum_probs=81.8
Q ss_pred cCCCccEEEEEeecCccCce--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHH-HHHHHHHhcCCeEEec
Q 007119 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL-IVDHACSAYSFISVPL 168 (617)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~G~v~vpl 168 (617)
.++.+|++.. ..|++|.. ..+|.+.+...+.... .....++.++|++..++|-....- ...++++..|+..+..
T Consensus 174 ~~~~~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~-~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~ 250 (541)
T 1v25_A 174 PERAACGMAY--TTGTTGLPKGVVYSHRALVLHSLAAS-LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLP 250 (541)
T ss_dssp CTTSEEEEEE--ECSSSSSCEEEEEEHHHHHHHHHHTT-STTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEEC
T ss_pred CCCCcEEEEE--CCCCCCCCcEeeeehHHHHHHHhhhh-hcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEee
Confidence 3566776543 26666653 3568887754433210 112347888999988887653332 2457788899998887
Q ss_pred CCCCCHHHHHHHHHhccccEEEecccchHHHHhhc----cCCCCceEEEEEC
Q 007119 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL----SEVPTVRLIVVIG 216 (617)
Q Consensus 169 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~----~~~~~~~~iv~~~ 216 (617)
.+...++.+...+++.++.+++..+..+..+.+.. ..++.++.+++-+
T Consensus 251 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG 302 (541)
T 1v25_A 251 GPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGG 302 (541)
T ss_dssp TTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECS
T ss_pred CCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECC
Confidence 76678999999999999999999888776665432 2456677766643
No 61
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=69.92 E-value=28 Score=36.99 Aligned_cols=120 Identities=3% Similarity=-0.164 Sum_probs=83.5
Q ss_pred cCCCccEEEEEeecCccCc--eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHH--HHHHHHhcCCeEEe
Q 007119 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI--VDHACSAYSFISVP 167 (617)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~--~~lA~~~~G~v~vp 167 (617)
.|+.+|++.. ..|++|. ...+|.+.+...+..+.. ..++.++|++..++|-...+-. .+++++..|+..+.
T Consensus 165 ~~~d~a~i~~--TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~ 239 (590)
T 3kxw_A 165 KSNDIAFLQY--TSGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIM 239 (590)
T ss_dssp CTTSEEEEEE--CSSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEe--CcCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEE
Confidence 4677777654 2566554 345799988877766654 3588999999999887765433 37888899998887
Q ss_pred cCCCC---CHHHHHHHHHhccccEEEecccchHHHHhhc-------cCCCCceEEEEEC
Q 007119 168 LYDTL---GPDAVKYIVNHASVQAVFCVPQTLNSLLSCL-------SEVPTVRLIVVIG 216 (617)
Q Consensus 168 l~~~~---~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~-------~~~~~~~~iv~~~ 216 (617)
+.+.. .+..+...+++.++.++.+.......+.+.. ..+++++.++.-+
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg 298 (590)
T 3kxw_A 240 MSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGA 298 (590)
T ss_dssp CCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECS
T ss_pred eCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCC
Confidence 65532 5678888999999999888776665554431 1345677666543
No 62
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=69.02 E-value=10 Score=28.44 Aligned_cols=45 Identities=9% Similarity=0.108 Sum_probs=37.2
Q ss_pred hHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHHc
Q 007119 558 AEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASE 603 (617)
Q Consensus 558 p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~~ 603 (617)
..++++.+.+.|.|.+|..+..+ .++++-+.+++.+++.++..++
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~-~D~ll~v~~~d~~~l~~~i~~~ 59 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGE-YDLIVKVETDTLKDLDQFITEK 59 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSS-CSEEEEEEESSHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCeeEEEEEccc-CCEEEEEEECCHHHHHHHHHHH
Confidence 47899999999999999887543 5677778889999999998643
No 63
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=68.06 E-value=23 Score=37.25 Aligned_cols=123 Identities=12% Similarity=-0.027 Sum_probs=84.8
Q ss_pred cCCCccEEEEEeecCccCce--eEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHhH--HHHHHHHHhcCCeEE
Q 007119 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLI-YHGISKGSCIGLYFVNRPEW--LIVDHACSAYSFISV 166 (617)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~G~v~v 166 (617)
.|+.+|++.. ..|+.|.. ..+|.+.+...+........ ..++.++|++..+++-...+ ...+++.+..|+..+
T Consensus 176 ~~~d~a~i~~--TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v 253 (536)
T 3ni2_A 176 SPDDVVALPY--SSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPIL 253 (536)
T ss_dssp CTTSEEECCE--ECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEE
T ss_pred CccCEEEEEc--CCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEE
Confidence 4677776543 26666643 35788888766554433222 34688899988888765433 345678888999888
Q ss_pred ecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhcc----CCCCceEEEEECC
Q 007119 167 PLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS----EVPTVRLIVVIGG 217 (617)
Q Consensus 167 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~----~~~~~~~iv~~~~ 217 (617)
... ...++.+...+++.++.++.+....+..+.+... .++.++.+++-++
T Consensus 254 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe 307 (536)
T 3ni2_A 254 IMP-KFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGA 307 (536)
T ss_dssp ECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESS
T ss_pred EcC-CCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCC
Confidence 764 5778899999999999999998887777655322 3567787776554
No 64
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=67.81 E-value=38 Score=35.66 Aligned_cols=118 Identities=13% Similarity=0.026 Sum_probs=82.5
Q ss_pred CCccEEEEEeecCccCc--eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH-HHHHHHHHhcCCeEEecCC
Q 007119 94 DYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW-LIVDHACSAYSFISVPLYD 170 (617)
Q Consensus 94 d~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl~~ 170 (617)
+.+|++.. ..|+.|. ...+|.+.+...+..++.. .++.++|++..+++-...+ +...+.++..|+..+.+.
T Consensus 180 ~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~- 253 (549)
T 3g7s_A 180 EDVALIPY--TGGTTGMPKGVMLTHFNLAANALQLAVA---TGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG- 253 (549)
T ss_dssp TSEEECCE--ECCCCC-CEEEEEEHHHHHHHHHHHHHH---HCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES-
T ss_pred CCEEEEEE--CCCccCCCceEEEcHHHHHHHHHHHHHH---cCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC-
Confidence 56666533 2666554 3457999888877766554 4788999998888765433 233667788898887765
Q ss_pred CCCHHHHHHHHHhccccEEEecccchHHHHhhcc------CCCCceEEEEECC
Q 007119 171 TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (617)
Q Consensus 171 ~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~------~~~~~~~iv~~~~ 217 (617)
...++.+...+++.++.++++.+..+..+.+... .++.++.++.-+.
T Consensus 254 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~ 306 (549)
T 3g7s_A 254 MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAW 306 (549)
T ss_dssp SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESS
T ss_pred CCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCc
Confidence 6788999999999999999999887776655432 3456776666443
No 65
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=66.99 E-value=26 Score=38.18 Aligned_cols=122 Identities=11% Similarity=-0.065 Sum_probs=80.5
Q ss_pred cCCCccEEEEEeecCccCcee--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHH--HHHHHHHhcCCeEEe
Q 007119 92 FRDYKYLGTRVRVDGTVGEYK--WMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL--IVDHACSAYSFISVP 167 (617)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~~--~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~v~vp 167 (617)
.++.++++.. ..|++|..+ .+|.+.+...+.... -...++.++|++...++-+...- ..+++.+..|++.+.
T Consensus 260 ~~~d~a~ily--TSGTTG~PKgV~~sh~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~ 335 (663)
T 1ry2_A 260 DSEDPLFLLY--TSGSTGAPKGVQHSTAGYLLGALLTM--RYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLV 335 (663)
T ss_dssp ETTSCCEEEE--ECCSSSSCEEEEECSHHHHHHHHHHH--HHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEE
T ss_pred CCCCceEEEe--ccCCCCCCceEEEchhHHHHHHHHHH--HHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEE
Confidence 3567777654 267666544 456666543332211 12357899999888776654332 346788999999887
Q ss_pred cCCC---CCHHHHHHHHHhccccEEEecccchHHHHhhcc------CCCCceEEEEECC
Q 007119 168 LYDT---LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (617)
Q Consensus 168 l~~~---~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~------~~~~~~~iv~~~~ 217 (617)
.... ..++.+..++++.++.++++.+..+..+.+... .+++++.++.-++
T Consensus 336 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe 394 (663)
T 1ry2_A 336 FEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGE 394 (663)
T ss_dssp ECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSS
T ss_pred ECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcC
Confidence 7542 467889999999999999999887777665432 3456777666443
No 66
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=66.12 E-value=26 Score=37.42 Aligned_cols=121 Identities=11% Similarity=-0.104 Sum_probs=79.8
Q ss_pred cCCCccEEEEEeecCccCceeE--EeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHH--HHHHHHHhcCCeEEe
Q 007119 92 FRDYKYLGTRVRVDGTVGEYKW--MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL--IVDHACSAYSFISVP 167 (617)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~~~--~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~v~vp 167 (617)
.++.+|++.. ..|++|..+- +|...+...+ .......++.+++++...++...... ..+++.+..|++.+.
T Consensus 223 ~~~d~a~i~~--TSGTTG~PKgV~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 297 (580)
T 3etc_A 223 KNEDICLVYF--SSGTAGFPKMVEHDNTYPLGHI---LTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFV 297 (580)
T ss_dssp CTTSEEEEEE--ECCSSSSCEEEEEETTHHHHHH---HHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEE
T ss_pred CCCCcEEEEE--eCCCCCCccEEEeccHHHHHHH---HHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEE
Confidence 4567776654 2677665443 4544333222 22222357889998888777665433 346888999999887
Q ss_pred cC-CCCCHHHHHHHHHhccccEEEecccchHHHHhhcc---CCCCceEEEEECC
Q 007119 168 LY-DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS---EVPTVRLIVVIGG 217 (617)
Q Consensus 168 l~-~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~---~~~~~~~iv~~~~ 217 (617)
.+ ....++.+...+++.++.++++.+..+..+.+... .++.++.++.-++
T Consensus 298 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~l~~lr~i~~gGe 351 (580)
T 3etc_A 298 YDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGE 351 (580)
T ss_dssp EECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---CCTTCCEEEECSS
T ss_pred ecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcccccCCCccceEEEEccC
Confidence 75 57788999999999999999998877776655321 2456776666443
No 67
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=65.77 E-value=44 Score=35.96 Aligned_cols=120 Identities=11% Similarity=-0.003 Sum_probs=84.4
Q ss_pred cCCCccEEEEEeecCccCce--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH-HHHHHHHHhcCCeEEec
Q 007119 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW-LIVDHACSAYSFISVPL 168 (617)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl 168 (617)
.|+.+|++.. ..|++|.. ..+|.+.+...+. .....++.++|++..+++-+.+. +..+++++..|++.+..
T Consensus 162 ~~~d~a~iiy--TSGSTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 235 (620)
T 4dg8_A 162 AADQIAYINF--SSGTTGRPKAIACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLN 235 (620)
T ss_dssp CTTSEEEEEE--EBSSSSSCEEEEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEE--CCCccccCeEEEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeC
Confidence 4677777654 26665543 3568877654332 23345788999999998876544 34568888999988776
Q ss_pred C-CCCCHHHHHHHHHhccccEEEecccchHHHHhhc-cCCCCceEEEEECC
Q 007119 169 Y-DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL-SEVPTVRLIVVIGG 217 (617)
Q Consensus 169 ~-~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~-~~~~~~~~iv~~~~ 217 (617)
. ....++.+...+++.++.+++.....+..+.+.. ..++.++.+++-++
T Consensus 236 ~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe 286 (620)
T 4dg8_A 236 DLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGD 286 (620)
T ss_dssp CSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESS
T ss_pred ccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeC
Confidence 3 3568899999999999999999888777665533 24567887777554
No 68
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=63.91 E-value=30 Score=36.62 Aligned_cols=122 Identities=10% Similarity=-0.047 Sum_probs=80.7
Q ss_pred CCccEEEEEeecCccCce--eEEeHHHHHHHHHHHHHHHHH-----cCCCCCCEEEEEcCCCHhH-HHHHHHHHhcCCeE
Q 007119 94 DYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIY-----HGISKGSCIGLYFVNRPEW-LIVDHACSAYSFIS 165 (617)
Q Consensus 94 d~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~-----~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~ 165 (617)
+.+|++.. ..|+.|.. ..+|.+.+...+..++..+.. ..+...+++..+.+..... +..++.++..|+..
T Consensus 175 ~~~a~i~~--TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~ 252 (562)
T 3ite_A 175 NLDAYLLY--TSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCA 252 (562)
T ss_dssp TSEEEEEE--ECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEE--CCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEE
Confidence 44455433 26665543 357999998888877776542 3567778888777766544 33467788889888
Q ss_pred EecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECC
Q 007119 166 VPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGG 217 (617)
Q Consensus 166 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~ 217 (617)
+........+.+...+++.++.+++..+..+..+......++.++.+++-+.
T Consensus 253 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~~~~~~lr~~~~gG~ 304 (562)
T 3ite_A 253 VTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVPEDAPHLVYLGVGGE 304 (562)
T ss_dssp EECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCCGGGSTTCCEEEEESS
T ss_pred EecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccCccccCceEEEEEecC
Confidence 7654433456677889999999999988766655444446677887776554
No 69
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=61.91 E-value=34 Score=36.29 Aligned_cols=120 Identities=12% Similarity=-0.012 Sum_probs=83.3
Q ss_pred cCCCccEEEEEeecCccCc--eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH-hHHHHHHHHHhcCCeEEec
Q 007119 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRP-EWLIVDHACSAYSFISVPL 168 (617)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~G~v~vpl 168 (617)
.|+.+|++.. ..|+.|. ...+|.+.+..... .....++.++|++..+++-+. -....+++++..|+..+..
T Consensus 212 ~~~d~a~i~~--TSGTTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 285 (570)
T 4gr5_A 212 GPEDVACVMF--TSGSTGRPKGVMSPHRALTGTYL----GQDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQ 285 (570)
T ss_dssp CTTSEEEEEC--CSSCCSSCCCEEEEHHHHHHHHS----SCCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEE--CCcCCCCCeEEEEecHHHHHHHH----hhhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEc
Confidence 4677777654 2555543 23578887643322 123347889999998888753 3455678888999988776
Q ss_pred CC-CCCHHHHHHHHHhccccEEEecccchHHHHhhc-cCCCCceEEEEECC
Q 007119 169 YD-TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL-SEVPTVRLIVVIGG 217 (617)
Q Consensus 169 ~~-~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~-~~~~~~~~iv~~~~ 217 (617)
.. ...+..+...+++.++.++......+..+.+.. ..+++++.++.-++
T Consensus 286 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~lr~~~~gG~ 336 (570)
T 4gr5_A 286 SGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAITGGE 336 (570)
T ss_dssp SSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESS
T ss_pred CCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhhCCCceEEEEecc
Confidence 54 567889999999999999999888777766543 24567887777554
No 70
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=60.58 E-value=33 Score=36.39 Aligned_cols=119 Identities=8% Similarity=-0.006 Sum_probs=76.0
Q ss_pred cCCCccEEEEEeecCccCce--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH-HHHHHHHHhcCCeEEec
Q 007119 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW-LIVDHACSAYSFISVPL 168 (617)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl 168 (617)
.|+.+|++.. ..|++|.. ..+|.+.+...+..+. ...++.++|++..+++-.... +..++.++..|+..+.+
T Consensus 180 ~~~d~a~i~~--TSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 254 (563)
T 1amu_A 180 KSTDLAYVIY--TSGTTGNPKGTMLEHKGISNLKVFFE---NSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYII 254 (563)
T ss_dssp CTTSEEEEEE--EC-----CEEEEEESHHHHHHHHHHH---HTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCcEEEEehHHHHHHHHHHH---HhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEc
Confidence 3567776654 26665543 3578888765544433 235889999998888765433 33567788899988766
Q ss_pred CCC--CCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECC
Q 007119 169 YDT--LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGG 217 (617)
Q Consensus 169 ~~~--~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~ 217 (617)
... ..+..+...+++.++.++...+..+..+.. ...+.++.+++-+.
T Consensus 255 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~--~~~~~lr~~~~gG~ 303 (563)
T 1amu_A 255 LKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP--ERILSIQTLITAGS 303 (563)
T ss_dssp CHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT--TTCCSCSEEEEESS
T ss_pred ChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh--cccccccEEEEEEe
Confidence 542 467788899999999999887665444322 13456777766544
No 71
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=58.07 E-value=15 Score=27.28 Aligned_cols=45 Identities=13% Similarity=0.125 Sum_probs=36.3
Q ss_pred hHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHHc
Q 007119 558 AEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASE 603 (617)
Q Consensus 558 p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~~ 603 (617)
..++++.+.+.|.|.+|..+..+ .+.++-+.+++.+++.++..++
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~-~d~l~~v~~~d~~~l~~~~~~~ 59 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVYGV-YDIVVKVEADSMDKLKDFVTNT 59 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECSSS-CSEEEEEECSSHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCeEEEEEEecc-CCEEEEEEECCHHHHHHHHHHH
Confidence 37899999999999999887543 4677777788999999988643
No 72
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=52.33 E-value=1e+02 Score=31.85 Aligned_cols=103 Identities=9% Similarity=-0.041 Sum_probs=73.1
Q ss_pred cCCCccEEEEEeecCccCc--eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHh--HHHHHHHHHhcCCeEEe
Q 007119 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPE--WLIVDHACSAYSFISVP 167 (617)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~G~v~vp 167 (617)
.|+.+|++.. ..|++|. ...+|.+.+...+..+...+ ++.++|++...++-..- ++..+++++..|+..+.
T Consensus 153 ~~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~ 227 (505)
T 3nyq_A 153 DDGDPALVVY--TSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRH 227 (505)
T ss_dssp CTTSEEEEEE--ECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEe--CCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEE
Confidence 4667777654 2666554 34578998888777666544 78899998887775433 33457888999998876
Q ss_pred cCCCCCHHHHHHHHHhccccEEEecccchHHHHh
Q 007119 168 LYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLS 201 (617)
Q Consensus 168 l~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~ 201 (617)
. +...++.+...+ +.++.+++..+..+..+.+
T Consensus 228 ~-~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 228 L-GRFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp C-SSCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred C-CCCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 6 456677777777 6789999988877666655
No 73
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=51.21 E-value=51 Score=37.67 Aligned_cols=123 Identities=10% Similarity=-0.041 Sum_probs=84.1
Q ss_pred cCCCccEEEEEeecCccCc--eeEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHh--HHHHHHHHHhcCCeEE
Q 007119 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLI-YHGISKGSCIGLYFVNRPE--WLIVDHACSAYSFISV 166 (617)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~G~v~v 166 (617)
.|+.+|++.. ..|++|. ...+|.+.+...+........ ..++.++|++..++|-... +...++..+..|+..+
T Consensus 223 ~~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v 300 (979)
T 3tsy_A 223 SPDDVVALPY--SSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAIL 300 (979)
T ss_dssp CTTSEEECCB--CCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEE
T ss_pred CccceEEEEe--CCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEE
Confidence 5677777643 2555554 346799888766554433222 3468889999888876543 3345678888999887
Q ss_pred ecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhcc----CCCCceEEEEECC
Q 007119 167 PLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS----EVPTVRLIVVIGG 217 (617)
Q Consensus 167 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~----~~~~~~~iv~~~~ 217 (617)
.. +...++.+...+++.++.++...+..+..+.+... .++.++.++.-+.
T Consensus 301 ~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~ 354 (979)
T 3tsy_A 301 IM-PKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAA 354 (979)
T ss_dssp EC-SSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSC
T ss_pred Ee-CCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCC
Confidence 65 45678899999999999999998877766655432 3566777666443
No 74
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=50.48 E-value=31 Score=36.09 Aligned_cols=105 Identities=12% Similarity=-0.070 Sum_probs=70.1
Q ss_pred cCCCccEEEEEeecCccCc--eeEEeHHHH-HHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHH--HHHHHHHhcCCeEE
Q 007119 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEA-GTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL--IVDHACSAYSFISV 166 (617)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~--~~~~Ty~el-~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~v~v 166 (617)
.|+.+|++.. ..|+.|. ...+|.+.+ ...... .....++.++|++..+++-...+- ..++..+..|+..+
T Consensus 181 ~~~d~a~i~~--TSGTTG~PKgv~~sh~~l~~~~~~~---~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 255 (529)
T 2v7b_A 181 GCDDIAFWLY--SSGSTGKPKGTVHTHANLYWTAELY---AKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAI 255 (529)
T ss_dssp CTTSEEEEEE--C-----CCCEEEEEHHHHHHHHHHT---CCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEE
T ss_pred CCCCeEEEEE--CCCCCCCCceEEEEhhHHHHHHHHH---hhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEE
Confidence 4567777654 2555443 345788876 322211 111247889999988888765543 34567888999998
Q ss_pred ecCCCCCHHHHHHHHHhccccEEEecccchHHHHh
Q 007119 167 PLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLS 201 (617)
Q Consensus 167 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~ 201 (617)
.+.+...++.+...+++.++.+++..+..+..+..
T Consensus 256 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 290 (529)
T 2v7b_A 256 LMAERPTADAIFARLVEHRPTVFYGVPTLYANMLV 290 (529)
T ss_dssp CCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHT
T ss_pred EecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHh
Confidence 87777889999999999999999998876665543
No 75
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=49.71 E-value=65 Score=33.89 Aligned_cols=120 Identities=8% Similarity=-0.085 Sum_probs=79.9
Q ss_pred CCCccEEEEEeecCccCc--eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH--HHHHHHHHhcCCeEEec
Q 007119 93 RDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW--LIVDHACSAYSFISVPL 168 (617)
Q Consensus 93 pd~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~G~v~vpl 168 (617)
|+.+|++.. ..|+.|. ...+|.+.+...+..+... ..++.++|++..+++-...+ +..+++.+..|+..+.+
T Consensus 175 ~~d~a~i~~--TSGTTG~PKgV~~sh~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~ 250 (576)
T 3gqw_A 175 PNDIAYLQY--TSGSTRFPRGVIITHREVMANLRAISHD--GIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYL 250 (576)
T ss_dssp TTSEEEEEC--TTSCSSSCCCEEEEHHHHHHHHHHHHHT--TSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEEC
T ss_pred CCCeEEEEe--CCCCCCCCceEEeeHHHHHHHHHHhhhc--ccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEc
Confidence 677777654 3555554 3457998887665544322 25789999999888876543 44567788888887766
Q ss_pred CC---CCCHHHHHHHHHhccccEEEecccchHHHHhhcc-------CCCCceEEEEEC
Q 007119 169 YD---TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS-------EVPTVRLIVVIG 216 (617)
Q Consensus 169 ~~---~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~-------~~~~~~~iv~~~ 216 (617)
.+ ...+..+...+++.++.++++.+.....+..... .++.++.++.-+
T Consensus 251 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg 308 (576)
T 3gqw_A 251 RTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGA 308 (576)
T ss_dssp CHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECS
T ss_pred chhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccC
Confidence 54 2456788899999999999988766554433221 345667666543
No 76
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=45.92 E-value=1e+02 Score=31.76 Aligned_cols=116 Identities=11% Similarity=0.034 Sum_probs=75.6
Q ss_pred cCCCccEEEEEeecCccCc--eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHh--HHHHHHHHHhcCCeEEe
Q 007119 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPE--WLIVDHACSAYSFISVP 167 (617)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~G~v~vp 167 (617)
.|+.+|++.. ..|+.|. ...+|.+.+...+..+... .++.++|++...++-... +....+.++..|+..+.
T Consensus 153 ~~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~ 227 (503)
T 4fuq_A 153 GADDLAAILY--TSGTTGRSKGAMLSHDNLASNSLTLVDY---WRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIF 227 (503)
T ss_dssp CTTSEEEEEE--CC--CCSCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEE
T ss_pred CCCCeEEEEE--CCCcccCCeEEEEeHHHHHHHHHHHHHH---hCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEE
Confidence 4577777654 2555553 3457998887776665544 478999999888875432 23445667778888776
Q ss_pred cCCCCCHHHHHHHHHhccccEEEecccchHHHHhhcc----CCCCceEEEEE
Q 007119 168 LYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS----EVPTVRLIVVI 215 (617)
Q Consensus 168 l~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~----~~~~~~~iv~~ 215 (617)
+. ...++.+...++ ++.+++..+..+..+.+... .++.++.++.-
T Consensus 228 ~~-~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~g 276 (503)
T 4fuq_A 228 LP-KFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISG 276 (503)
T ss_dssp CS-SCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEEC
T ss_pred cC-CCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEEC
Confidence 54 577888888887 78888888777766655332 23456655553
No 77
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=44.40 E-value=1.5e+02 Score=30.53 Aligned_cols=121 Identities=10% Similarity=-0.039 Sum_probs=77.7
Q ss_pred CCCccEEEEEeecCccCc--eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH-HHHHHHHHhcCCeEEecC
Q 007119 93 RDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW-LIVDHACSAYSFISVPLY 169 (617)
Q Consensus 93 pd~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl~ 169 (617)
++.+|++.. ..|+.|. ...+|.+.+...+..+.... ..++.+++++..+.+-+... +..+++++..|+..+.+.
T Consensus 144 ~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 220 (521)
T 3l8c_A 144 GDDNYYIIF--TSGTTGQPKGVQISHDNLLSFTNWMIEDA-AFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALP 220 (521)
T ss_dssp TTSEEEEEE--CCC---CCCEEEEEHHHHHHHHHHHHHCT-TTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECC
T ss_pred CCCcEEEEE--cCCCCCCCCEEEEehHHHHHHHHHHhhcc-ccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcC
Confidence 466666654 2555543 34579988876554433221 24677888888777666443 445677888998887765
Q ss_pred CC--CCHHHHHHHHHhccccEEEecccchHHHHhhcc----CCCCceEEEEEC
Q 007119 170 DT--LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS----EVPTVRLIVVIG 216 (617)
Q Consensus 170 ~~--~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~----~~~~~~~iv~~~ 216 (617)
.. .....+...+.+.++.++...+.....+..... .++.++.++.-+
T Consensus 221 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG 273 (521)
T 3l8c_A 221 KELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDG 273 (521)
T ss_dssp GGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECS
T ss_pred HHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEec
Confidence 53 367788899999999999988877665544322 345677666543
No 78
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=42.21 E-value=34 Score=26.01 Aligned_cols=44 Identities=9% Similarity=0.115 Sum_probs=36.1
Q ss_pred hHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHH
Q 007119 558 AEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAAS 602 (617)
Q Consensus 558 p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~ 602 (617)
..++++.+.++|.|.+|..+..+ .+.++-+.+++.+++.++..+
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~-~D~ll~v~~~d~~~l~~~l~~ 58 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVTGP-YDLVALVRLKDVEELDDVVTQ 58 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEESSS-SSEEEEEEESSGGGHHHHCCC
T ss_pred HHHHHHHHhcCCCeEEEEEeecC-CCEEEEEEECCHHHHHHHHHH
Confidence 57899999999999999887544 567777888999999988743
No 79
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=41.70 E-value=2.1e+02 Score=28.94 Aligned_cols=103 Identities=10% Similarity=0.018 Sum_probs=70.1
Q ss_pred CCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcC---cccCCCcEEEEeCChHHHHHHHH-HHHHHHhCcEEEEec
Q 007119 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG---TKFYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ 329 (617)
Q Consensus 254 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~~~~~~ 329 (617)
.|+.+|++.........-....+|.+.+...+..+... .+. ++|++..++|-.. .++. .+.++..|+..+...
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~--e~~~~~lA~~~~G~v~vpl~ 113 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGL--EYVVAFLGALQAGRIAVPLS 113 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSH--HHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcH--HHHHHHHHHHHhCcEEEeeC
Confidence 46778876654211111134679999987766555433 444 8999998888663 3343 567788999888764
Q ss_pred C-----ChhhHHHHHHhhCCeEEeechHHHHHHHH
Q 007119 330 G-----DNMKLMDDMAALRPTVFCSVPRLYNRIYA 359 (617)
Q Consensus 330 ~-----~~~~l~~~i~~~~~t~~~~vP~~~~~l~~ 359 (617)
. ....+...++..++.+++..+.....+..
T Consensus 114 ~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 114 VPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp SCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 2 46778888999999999998877665543
No 80
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=38.97 E-value=1e+02 Score=30.04 Aligned_cols=66 Identities=6% Similarity=-0.008 Sum_probs=48.3
Q ss_pred HHHHcC-CCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEeccc
Q 007119 129 GLIYHG-ISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQ 194 (617)
Q Consensus 129 ~L~~~G-v~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~ 194 (617)
.+.+.| +++|+.|.|....+-.-..+.++|...|.-++.+-|...+..-...++..++++++++..
T Consensus 61 ~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 61 KAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 344556 488888655555677777888888889998776666555556667788999999999754
No 81
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=37.95 E-value=83 Score=37.27 Aligned_cols=120 Identities=13% Similarity=-0.006 Sum_probs=82.5
Q ss_pred cCCCccEEEEEeecCccCce--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHH-HHHHHHHhcCCeEEec
Q 007119 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL-IVDHACSAYSFISVPL 168 (617)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~G~v~vpl 168 (617)
.|+.+|++.. ..|++|.. ..+|.+.+... .......++.++|++..+.+-+.+.. .-+++.+..|+..+..
T Consensus 605 ~~~~~ayiiy--TSGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~ 678 (1304)
T 2vsq_A 605 DPNDPAYIMY--TSGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIA 678 (1304)
T ss_dssp CTTSEEEEEE--ECCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEe--CCCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEEC
Confidence 4777777654 26665543 35788776532 22223347889999988888776543 4477888899988877
Q ss_pred CC--CCCHHHHHHHHHhccccEEEecccchHHHHhhcc-CCCCceEEEEECC
Q 007119 169 YD--TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS-EVPTVRLIVVIGG 217 (617)
Q Consensus 169 ~~--~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~-~~~~~~~iv~~~~ 217 (617)
++ ...++.+...+++.++.++++.+..+..+.+... .++.++.+++-++
T Consensus 679 ~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe 730 (1304)
T 2vsq_A 679 DEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGE 730 (1304)
T ss_dssp CGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHHHTCSEEEEESS
T ss_pred ChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcCCCccEEEEecC
Confidence 65 4578899999999999999998877766654321 2356777776554
No 82
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=35.81 E-value=72 Score=26.80 Aligned_cols=45 Identities=11% Similarity=0.060 Sum_probs=36.8
Q ss_pred hHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHHc
Q 007119 558 AEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASE 603 (617)
Q Consensus 558 p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~~ 603 (617)
..++++.+.++|.|.+|+.+..+ -+.++-+.+.+.+++.++..++
T Consensus 82 ~~~~~~~l~~~peV~~~~~vtG~-~d~~~~v~~~d~~~l~~~l~~~ 126 (152)
T 2cg4_A 82 YPSALAKLESLDEVTEAYYTTGH-YSIFIKVMCRSIDALQHVLINK 126 (152)
T ss_dssp HHHHHHHHHTCTTEEEEEEESSS-CSEEEEEEESCHHHHHHHHHHT
T ss_pred HHHHHHHHhCCcCeEEEEEEecc-cCEEEEEEECCHHHHHHHHHHH
Confidence 46899999999999999887433 4677778889999999998654
No 83
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=32.70 E-value=69 Score=27.38 Aligned_cols=44 Identities=16% Similarity=0.173 Sum_probs=34.9
Q ss_pred hHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHH
Q 007119 558 AEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAAS 602 (617)
Q Consensus 558 p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~ 602 (617)
.+++.+.+.++|.|.+|+.+... .++++-+.+++.+++.++..+
T Consensus 79 ~~~~~~~l~~~peV~~~~~vtG~-~D~~l~v~~~d~~~l~~~l~~ 122 (162)
T 3i4p_A 79 LKRFSEVVSEFPEVVEFYRMSGD-VDYLLRVVVPDIAAYDAFYKR 122 (162)
T ss_dssp HHHHHHHHHHCTTEEEEEECCSS-CSEEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEeeecCCC-CCEEEEEEECCHHHHHHHHHH
Confidence 46788999999999999876432 467777778899998888764
No 84
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=31.96 E-value=1.3e+02 Score=28.16 Aligned_cols=76 Identities=11% Similarity=-0.035 Sum_probs=53.0
Q ss_pred HHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCC
Q 007119 84 NFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSF 163 (617)
Q Consensus 84 ~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~ 163 (617)
.+++..+..|+...+.+. |....+|-..|..++.+++.+.+..|.+.|+ ...++.-|+.-.+.....-.....
T Consensus 20 v~~~i~~~lP~~~~iy~~---D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~----~~IVIACNTa~~~al~~lr~~~~i 92 (269)
T 3ist_A 20 VVREVLKQLPHEQVYYLG---DTARCPYGPRDKEEVAKFTWEMTNFLVDRGI----KMLVIACNTATAAALYDIREKLDI 92 (269)
T ss_dssp HHHHHHHHCTTCCEEEEE---CGGGCCCTTSCHHHHHHHHHHHHHHHHHTTC----SEEEECCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHCCCCcEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCCCccHHHHHHHHHhcCC
Confidence 455666788999888776 7777778888999999999999999999876 345555566654332222233454
Q ss_pred eEE
Q 007119 164 ISV 166 (617)
Q Consensus 164 v~v 166 (617)
.++
T Consensus 93 Pvi 95 (269)
T 3ist_A 93 PVI 95 (269)
T ss_dssp CEE
T ss_pred CEE
Confidence 444
No 85
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=30.70 E-value=1.6e+02 Score=26.60 Aligned_cols=52 Identities=10% Similarity=-0.134 Sum_probs=35.6
Q ss_pred cEEEEeCCh-HHHHHHHHH-HHHHHhCcEEEEec--CChhhHHHHHHhhCCeEEee
Q 007119 298 DVYISYLPL-AHIYERANQ-VMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCS 349 (617)
Q Consensus 298 d~~l~~lPl-~h~~~~~~~-~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~ 349 (617)
.+++...+- .|..|.... ...-..|..+++.. -.+..+.+.+++++|+++..
T Consensus 94 ~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 94 LAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp EEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEE
T ss_pred eEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEE
Confidence 344444433 377776654 44556777777765 57899999999999987665
No 86
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=30.62 E-value=97 Score=26.29 Aligned_cols=45 Identities=18% Similarity=0.221 Sum_probs=36.3
Q ss_pred hHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHHc
Q 007119 558 AEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASE 603 (617)
Q Consensus 558 p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~~ 603 (617)
.+++++.+.++|.|.+|+.+..+ .++++-+.+.+.+++.++..+.
T Consensus 85 ~~~~~~~l~~~peV~~~~~vtG~-~d~~~~v~~~d~~~l~~~l~~~ 129 (162)
T 2p5v_A 85 REDFAASVRKWPEVLSCFALTGE-TDYLLQAFFTDMNAFSHFVLDT 129 (162)
T ss_dssp HHHHHHHHTTCTTEEEEEEESSS-CSEEEEEEESSHHHHHHHHHHT
T ss_pred HHHHHHHHhcChhhhEeeeecCC-CCEEEEEEECCHHHHHHHHHHH
Confidence 56788999999999999876433 5677777888999999998654
No 87
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=30.14 E-value=1.3e+02 Score=29.77 Aligned_cols=61 Identities=10% Similarity=-0.074 Sum_probs=41.0
Q ss_pred HHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCC-----CCCHHHHHHHHHhcc--ccEEEec
Q 007119 129 GLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYD-----TLGPDAVKYIVNHAS--VQAVFCV 192 (617)
Q Consensus 129 ~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~-----~~~~~~l~~il~~~~--~~~vi~~ 192 (617)
.|...++++||.|.+-.+....+ ..++...|+.++.++. .+..+++...+...+ .++|+..
T Consensus 69 al~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 69 AIQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 34455789999998877666554 3456778987765542 347888888774434 6777644
No 88
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=29.92 E-value=1e+02 Score=25.78 Aligned_cols=44 Identities=11% Similarity=0.085 Sum_probs=34.6
Q ss_pred hHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEE-eCHHHHHHHHHH
Q 007119 558 AEKIENVYAKCKFVGQCFVYGDSFNSALVAIVS-VDQDALKAWAAS 602 (617)
Q Consensus 558 p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv-~~~~~~~~~~~~ 602 (617)
.+++++.+.++|.|.+|+.+..+ .+.++-+.+ ++.+++.++..+
T Consensus 82 ~~~~~~~l~~~peV~~~~~vtG~-~d~~~~v~~~~d~~~l~~~~~~ 126 (151)
T 2dbb_A 82 ADKVISEISDIEYVKSVEKGVGR-YNIIVRLLLPKDIKDAENLISE 126 (151)
T ss_dssp HHHHHHHHTTCTTEEEEEEEESS-CSEEEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEEEeEecCC-CCEEEEEEEcCCHHHHHHHHHH
Confidence 35888999999999999877543 456777777 899999888843
No 89
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=29.07 E-value=3.9e+02 Score=25.53 Aligned_cols=78 Identities=10% Similarity=0.126 Sum_probs=45.5
Q ss_pred CCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCC----CCCHHHHHHHHHhccccEEEec-cc-------chHHHHhh
Q 007119 135 ISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYD----TLGPDAVKYIVNHASVQAVFCV-PQ-------TLNSLLSC 202 (617)
Q Consensus 135 v~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~----~~~~~~l~~il~~~~~~~vi~~-~~-------~~~~l~~~ 202 (617)
+++||.|.+..+.-..+. .++...|+.++.++. ....+++...++. +.++++.. .. ..+.+.++
T Consensus 105 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~p~nptG~~~~~~~l~~l 180 (363)
T 3ffh_A 105 LDTTTNTVMATPTFVQYR---QNALIEGAEVREIPLLQDGEHDLEGMLNAIDE-KTTIVWICNPNNPTGNYIELADIQAF 180 (363)
T ss_dssp CSTTCEEEEEESSCHHHH---HHHHHHTCEEEEEECCTTSCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred ccCCCEEEEcCCChHHHH---HHHHHcCCEEEEecCCCCCCcCHHHHHHhccc-CCCEEEEeCCCCCcCCCcCHHHHHHH
Confidence 568999998887665543 345556766555432 2467788877754 46666543 21 13455555
Q ss_pred ccCCCCceEEEEECC
Q 007119 203 LSEVPTVRLIVVIGG 217 (617)
Q Consensus 203 ~~~~~~~~~iv~~~~ 217 (617)
...+.. ..++++|+
T Consensus 181 ~~~~~~-~~~li~De 194 (363)
T 3ffh_A 181 LDRVPS-DVLVVLDE 194 (363)
T ss_dssp HTTSCT-TSEEEEEC
T ss_pred HHhCCC-CcEEEEeC
Confidence 554443 44555555
No 90
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=28.20 E-value=1.2e+02 Score=25.00 Aligned_cols=44 Identities=9% Similarity=0.210 Sum_probs=34.8
Q ss_pred hHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHH
Q 007119 558 AEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAAS 602 (617)
Q Consensus 558 p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~ 602 (617)
.+++++.+.++|.|.+|+.+..+ ...++-+.+.+.+++.++..+
T Consensus 78 ~~~~~~~l~~~p~V~~~~~~tG~-~d~~~~v~~~~~~~l~~~~~~ 121 (144)
T 2cfx_A 78 YERFKSYIQTLPNIEFCYRIAGA-ACYMLKINAESLEAVEDFINK 121 (144)
T ss_dssp HHHHHHHHHTCTTEEEEEEEESS-SSEEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHhcChhhheeeeeeCC-CCEEEEEEECCHHHHHHHHHH
Confidence 46788899999999999866433 467777778899999888754
No 91
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=26.93 E-value=3e+02 Score=23.67 Aligned_cols=89 Identities=7% Similarity=-0.012 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHH---HHHHhccccEEEecccchHH
Q 007119 122 ARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVK---YIVNHASVQAVFCVPQTLNS 198 (617)
Q Consensus 122 ~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~---~il~~~~~~~vi~~~~~~~~ 198 (617)
....+...|.+.+ ++.++.|+++.....-.+.-.+...|..+..++..++.++-. ..++..+.+++++......
T Consensus 32 K~~~L~~ll~~~~--~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~- 108 (185)
T 2jgn_A 32 KRSFLLDLLNATG--KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAAR- 108 (185)
T ss_dssp HHHHHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC-----
T ss_pred HHHHHHHHHHhcC--CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhc-
Confidence 3344555555543 567888888877655555555566788888898887765433 3445567788887643221
Q ss_pred HHhhccCCCCceEEEEECC
Q 007119 199 LLSCLSEVPTVRLIVVIGG 217 (617)
Q Consensus 199 l~~~~~~~~~~~~iv~~~~ 217 (617)
.-+++.+..+|.++.
T Consensus 109 ----Gldi~~~~~VI~~d~ 123 (185)
T 2jgn_A 109 ----GLDISNVKHVINFDL 123 (185)
T ss_dssp ------CCCSBSEEEESSC
T ss_pred ----CCCcccCCEEEEeCC
Confidence 114667777777654
No 92
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=26.82 E-value=1.6e+02 Score=28.57 Aligned_cols=60 Identities=15% Similarity=0.106 Sum_probs=35.6
Q ss_pred CCCCCCEEEEEcCCCH------hHHH-HHHHHHhcCCeEEecCCCC------------CHHHHHHHHHhccccEEEecc
Q 007119 134 GISKGSCIGLYFVNRP------EWLI-VDHACSAYSFISVPLYDTL------------GPDAVKYIVNHASVQAVFCVP 193 (617)
Q Consensus 134 Gv~~gd~V~i~~~n~~------e~~~-~~lA~~~~G~v~vpl~~~~------------~~~~l~~il~~~~~~~vi~~~ 193 (617)
-+++||+|+|++|.+. +-+- +.--+-..|.-++.-.... ..+++..++.+-++++|+|..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 4789999999998753 2221 2222334677765432211 123566677777777777763
No 93
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=24.23 E-value=3.1e+02 Score=23.23 Aligned_cols=87 Identities=3% Similarity=-0.064 Sum_probs=54.6
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHH---hccccEEEecccchHHH
Q 007119 123 RTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVN---HASVQAVFCVPQTLNSL 199 (617)
Q Consensus 123 ~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~---~~~~~~vi~~~~~~~~l 199 (617)
...+...|... ++..+.|++......-.+.-.+...|..+..++..++.++-..+++ ..+.+++++......
T Consensus 19 ~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~-- 93 (172)
T 1t5i_A 19 NRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR-- 93 (172)
T ss_dssp HHHHHHHHHHS---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCST--
T ss_pred HHHHHHHHHhC---CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhc--
Confidence 34444444443 4557888887776555555555667888889999998876655554 456778887743211
Q ss_pred HhhccCCCCceEEEEECC
Q 007119 200 LSCLSEVPTVRLIVVIGG 217 (617)
Q Consensus 200 ~~~~~~~~~~~~iv~~~~ 217 (617)
.-+++.+..+|.++.
T Consensus 94 ---Gldi~~~~~Vi~~d~ 108 (172)
T 1t5i_A 94 ---GMDIERVNIAFNYDM 108 (172)
T ss_dssp ---TCCGGGCSEEEESSC
T ss_pred ---CcchhhCCEEEEECC
Confidence 113455667776554
No 94
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=23.77 E-value=2.1e+02 Score=27.85 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=35.9
Q ss_pred CCCCCCEEEEEcCCCHh------HHHHHH-HHHhcCCeEEecCCCC------------CHHHHHHHHHhccccEEEecc
Q 007119 134 GISKGSCIGLYFVNRPE------WLIVDH-ACSAYSFISVPLYDTL------------GPDAVKYIVNHASVQAVFCVP 193 (617)
Q Consensus 134 Gv~~gd~V~i~~~n~~e------~~~~~l-A~~~~G~v~vpl~~~~------------~~~~l~~il~~~~~~~vi~~~ 193 (617)
-+++||+|+|++|.+.- -+-.-. -+-..|..++.-.... ..+++..++.+-++++|+|..
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 47899999999998842 222222 2334787776432111 123466666777777777763
No 95
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=23.75 E-value=3.3e+02 Score=22.97 Aligned_cols=88 Identities=8% Similarity=-0.073 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHH---hccccEEEecccchHH
Q 007119 122 ARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVN---HASVQAVFCVPQTLNS 198 (617)
Q Consensus 122 ~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~---~~~~~~vi~~~~~~~~ 198 (617)
+...+...|... ++..+.|+++.....-.+.-.+...|..+..++..++..+-..+++ ..+.+++++......
T Consensus 21 K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~- 96 (175)
T 2rb4_A 21 KYQALCNIYGSI---TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCAR- 96 (175)
T ss_dssp HHHHHHHHHTTS---CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCT-
T ss_pred HHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhc-
Confidence 444455444443 4568999988876655555556667888889999998876665554 456788887743221
Q ss_pred HHhhccCCCCceEEEEECC
Q 007119 199 LLSCLSEVPTVRLIVVIGG 217 (617)
Q Consensus 199 l~~~~~~~~~~~~iv~~~~ 217 (617)
.-+++.+..+|.++.
T Consensus 97 ----Gid~~~~~~Vi~~d~ 111 (175)
T 2rb4_A 97 ----GIDVKQVTIVVNFDL 111 (175)
T ss_dssp ----TTCCTTEEEEEESSC
T ss_pred ----CCCcccCCEEEEeCC
Confidence 114567777877664
No 96
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=23.43 E-value=2e+02 Score=28.02 Aligned_cols=65 Identities=6% Similarity=-0.019 Sum_probs=50.1
Q ss_pred HHHcC-CCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEeccc
Q 007119 130 LIYHG-ISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQ 194 (617)
Q Consensus 130 L~~~G-v~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~ 194 (617)
+.+.| +++|.+..|....+-.-..+.++|.++|.-++.+-|...+..-...++..++++++++..
T Consensus 77 a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 77 AEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 33444 678876666777777788888999999988877766666666777889999999998753
No 97
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=23.06 E-value=1.1e+02 Score=25.53 Aligned_cols=42 Identities=12% Similarity=0.168 Sum_probs=33.7
Q ss_pred hHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHH
Q 007119 558 AEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWA 600 (617)
Q Consensus 558 p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~ 600 (617)
.+++.+.+.++|.|.+|+.+..+ .+.++-+.+++.+++.++.
T Consensus 80 ~~~~~~~l~~~p~V~~~~~~tG~-~d~~~~v~~~d~~~l~~~~ 121 (151)
T 2cyy_A 80 YSEVASNLAKYPEIVEVYETTGD-YDMVVKIRTKNSEELNNFL 121 (151)
T ss_dssp HHHHHHHHHTCTTEEEEEECSSS-SSEEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHhcCCCeeEeeEecCC-CCEEEEEEECCHHHHHHHH
Confidence 46889999999999999886432 4566677778999998887
No 98
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=23.00 E-value=3.3e+02 Score=22.67 Aligned_cols=86 Identities=3% Similarity=0.002 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHH---hccccEEEecccchHHHH
Q 007119 124 TEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVN---HASVQAVFCVPQTLNSLL 200 (617)
Q Consensus 124 ~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~---~~~~~~vi~~~~~~~~l~ 200 (617)
..+...|.+. .+.++.|+++.....-.+.-.+...|..+..++..++.++-..+++ ..+.+++++.....
T Consensus 24 ~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~---- 96 (163)
T 2hjv_A 24 SLLKDVLMTE---NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAA---- 96 (163)
T ss_dssp HHHHHHHHHH---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGT----
T ss_pred HHHHHHHHhc---CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhh----
Confidence 3444444443 3457888887766555555555667888999999998876665554 45677888764321
Q ss_pred hhccCCCCceEEEEECC
Q 007119 201 SCLSEVPTVRLIVVIGG 217 (617)
Q Consensus 201 ~~~~~~~~~~~iv~~~~ 217 (617)
..-+++.+..+|.++.
T Consensus 97 -~Gld~~~~~~Vi~~~~ 112 (163)
T 2hjv_A 97 -RGIDIENISLVINYDL 112 (163)
T ss_dssp -TTCCCSCCSEEEESSC
T ss_pred -cCCchhcCCEEEEeCC
Confidence 1224667777877664
No 99
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=22.24 E-value=5.1e+02 Score=24.63 Aligned_cols=55 Identities=11% Similarity=0.012 Sum_probs=38.1
Q ss_pred CCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEec--CC--CCCHHHHHHHHHhccccEEEec
Q 007119 135 ISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL--YD--TLGPDAVKYIVNHASVQAVFCV 192 (617)
Q Consensus 135 v~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl--~~--~~~~~~l~~il~~~~~~~vi~~ 192 (617)
+++||.|.+..+.-..+.. ++...|+.++.+ ++ ....+++...++..++++|++.
T Consensus 106 ~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 164 (367)
T 3euc_A 106 ARPGAKVMAPVPGFVMYAM---SAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLA 164 (367)
T ss_dssp CCTTCEEEEEESCSCCSCH---HHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCEEEEcCCCHHHHHH---HHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEc
Confidence 5789999888776655433 355678766554 43 3578899998887677777764
No 100
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=22.14 E-value=1.3e+02 Score=25.95 Aligned_cols=42 Identities=12% Similarity=0.168 Sum_probs=33.6
Q ss_pred hHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHH
Q 007119 558 AEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWA 600 (617)
Q Consensus 558 p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~ 600 (617)
.+++++.+.+.|.|.+|+.+..+ .+.++-+.+++.+++.++.
T Consensus 100 ~~~v~~~l~~~peV~~~~~vtG~-~d~l~~v~~~d~~~l~~~l 141 (171)
T 2e1c_A 100 YSEVASNLAKYPEIVEVYETTGD-YDMVVKIRTKNSEELNNFL 141 (171)
T ss_dssp HHHHHHHHHTSTTEEEEEECSSS-SSEEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHhcCcCeEEEEEeeCC-CCEEEEEEECCHHHHHHHH
Confidence 46899999999999999886432 4567777778999988887
No 101
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=21.23 E-value=2.2e+02 Score=28.12 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=36.3
Q ss_pred CCCCCCEEEEEcCCCHh------HHHHHH-HHHhcCCeEEecCCCC------------CHHHHHHHHHhccccEEEecc
Q 007119 134 GISKGSCIGLYFVNRPE------WLIVDH-ACSAYSFISVPLYDTL------------GPDAVKYIVNHASVQAVFCVP 193 (617)
Q Consensus 134 Gv~~gd~V~i~~~n~~e------~~~~~l-A~~~~G~v~vpl~~~~------------~~~~l~~il~~~~~~~vi~~~ 193 (617)
-+++||+|+|++|.+.- -+-.-. -+-..|..++.-.... ..+++..++.+-++++|+|..
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 58899999999998742 222222 2334787776432211 123456666677777777753
No 102
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=20.87 E-value=6e+02 Score=24.93 Aligned_cols=55 Identities=15% Similarity=0.179 Sum_probs=37.2
Q ss_pred CCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCC---CCCHHHHHHHHHh-----------ccccEEEec
Q 007119 135 ISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYD---TLGPDAVKYIVNH-----------ASVQAVFCV 192 (617)
Q Consensus 135 v~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~---~~~~~~l~~il~~-----------~~~~~vi~~ 192 (617)
+++||.|.+..|.-..+. .++...|+.++++.. .+..+++...++. .++++|++.
T Consensus 129 ~~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~ 197 (425)
T 2r2n_A 129 INPGDNVLLDEPAYSGTL---QSLHPLGCNIINVASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTV 197 (425)
T ss_dssp CCTTCEEEEESSCCHHHH---HHHGGGTCEEEEECEETTEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEEC
T ss_pred CCCCCEEEEeCCCcHHHH---HHHHHcCCEEEEeCcCCCCCCHHHHHHHHHhhhccccccccCCCceEEEEC
Confidence 468999999887766544 445677887766542 2467788888873 346777653
No 103
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=20.61 E-value=2.3e+02 Score=27.42 Aligned_cols=60 Identities=10% Similarity=-0.006 Sum_probs=36.0
Q ss_pred CCCCCCEEEEEcCCCHh------HHHHHH-HHHhcCCeEEecCCCC------------CHHHHHHHHHhccccEEEecc
Q 007119 134 GISKGSCIGLYFVNRPE------WLIVDH-ACSAYSFISVPLYDTL------------GPDAVKYIVNHASVQAVFCVP 193 (617)
Q Consensus 134 Gv~~gd~V~i~~~n~~e------~~~~~l-A~~~~G~v~vpl~~~~------------~~~~l~~il~~~~~~~vi~~~ 193 (617)
-+++||+|+|++|.+.- -+-.-. -+-..|..++.-...+ ..+++..++.+-++++|+|..
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 47899999999988752 222222 2234677776432211 123566667777777887753
No 104
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=20.02 E-value=2.7e+02 Score=27.20 Aligned_cols=77 Identities=14% Similarity=0.156 Sum_probs=45.5
Q ss_pred CCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEec--CC---CCCHHHHHHHHHhccccEEEecc-----cchHHHHhhc
Q 007119 134 GISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL--YD---TLGPDAVKYIVNHASVQAVFCVP-----QTLNSLLSCL 203 (617)
Q Consensus 134 Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl--~~---~~~~~~l~~il~~~~~~~vi~~~-----~~~~~l~~~~ 203 (617)
++++||.|.+..+....... ++...|+.++.+ ++ ....+.+...++. +.++|++.. ...+.+.++.
T Consensus 76 ~~~~g~~Vi~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~g~~~~~~~i~~l~ 151 (390)
T 3b8x_A 76 RLKKGDEIIVPAVSWSTTYY---PLQQYGLRVKFVDIDINTLNIDIESLKEAVTD-STKAILTVNLLGNPNNFDEINKII 151 (390)
T ss_dssp SCCTTCEEEEESSSCHHHHH---HHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEEECGGGCCCCHHHHHHHH
T ss_pred CCCCcCEEEECCCCcHHHHH---HHHHcCCEEEEEecCccccCcCHHHHHHHhCc-CCeEEEEECCccChhhHHHHHHHH
Confidence 68899999888776655443 555678766554 43 2367788887764 556665532 2334454444
Q ss_pred cCCCCceEEEEECC
Q 007119 204 SEVPTVRLIVVIGG 217 (617)
Q Consensus 204 ~~~~~~~~iv~~~~ 217 (617)
.+ ...++++|.
T Consensus 152 ~~---~~~~li~D~ 162 (390)
T 3b8x_A 152 GG---RDIILLEDN 162 (390)
T ss_dssp TT---SCCEEEEEC
T ss_pred HH---cCCEEEEEC
Confidence 33 233455554
Done!