BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007121
(617 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BJ34|MARF1_MOUSE Meiosis arrest female protein 1 OS=Mus musculus GN=Marf1 PE=1 SV=3
Length = 1730
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 21/149 (14%)
Query: 32 VWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGI 91
V+WDIENC VP T+ Q I + + D ++ V L++ +
Sbjct: 354 VFWDIENCSVPSGRSATTVVQRIREKFFRGH--REAEFICVCDISKENKEVIQELNNCQV 411
Query: 92 ALNHVPAV------------------DNPAPSNYLLISGDRDFSNALHQLRMRR-YNILL 132
+ H+ A + AP+ +L+S D +F+ L LR R ++I+L
Sbjct: 412 TVAHINATAKNAADDKLRQSLRRFANTHTAPATVVLVSTDVNFALELSDLRHRHGFHIIL 471
Query: 133 AQPHKASAPLVAAAKSVWLWTSLVAGGPP 161
++AS L+ A + + ++ PP
Sbjct: 472 VHKNQASEALLHHANQLIRFEEFISDLPP 500
>sp|Q8VIG2|MARF1_RAT Meiosis arrest female protein 1 OS=Rattus norvegicus GN=Marf1 PE=1
SV=2
Length = 1735
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 21/149 (14%)
Query: 32 VWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGI 91
V+WDIENC VP T+ Q I + + D ++ V L++ +
Sbjct: 353 VFWDIENCSVPSGRSATTVVQRIREKFFRGHR--EAEFICVCDISKENKEVIQELNNCQV 410
Query: 92 ALNHVPAV------------------DNPAPSNYLLISGDRDFSNALHQLRMRR-YNILL 132
+ H+ A + AP+ +L+S D +F+ L LR R ++I+L
Sbjct: 411 TVAHINATAKNAADDKLRQSLRRFANTHTAPATVVLVSTDVNFALELSDLRHRHGFHIIL 470
Query: 133 AQPHKASAPLVAAAKSVWLWTSLVAGGPP 161
++AS L+ A + + ++ PP
Sbjct: 471 VHKNQASEALLHHANQLIRFEEFISDLPP 499
>sp|E1BZ85|MARF1_CHICK Meiosis arrest female protein 1 homolog OS=Gallus gallus GN=MARF1
PE=3 SV=1
Length = 1741
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 21/149 (14%)
Query: 32 VWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGI 91
V+WDIENC VP + Q I K + D ++ V L++ +
Sbjct: 347 VFWDIENCSVPTGRSAVAVVQRIREKFFKGHR--EAEFICVCDISKENKEVIQELNNCQV 404
Query: 92 ALNHVPAV------------------DNPAPSNYLLISGDRDFSNALHQLRMRR-YNILL 132
+ H+ A + AP+ +L+S D +F+ L LR R + I+L
Sbjct: 405 TVAHINATAKNAADDKLRQSLRRFADTHTAPATVVLVSTDVNFALELSDLRHRHGFRIIL 464
Query: 133 AQPHKASAPLVAAAKSVWLWTSLVAGGPP 161
++AS L+ A + + ++ PP
Sbjct: 465 VHKNQASEALLHHAHELVCFEEFISDLPP 493
>sp|Q9Y4F3|MARF1_HUMAN Meiosis arrest female protein 1 OS=Homo sapiens GN=KIAA0430 PE=1
SV=6
Length = 1742
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 21/149 (14%)
Query: 32 VWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGI 91
V+WDIENC VP + Q I K + D ++ V L++ +
Sbjct: 355 VFWDIENCSVPSGRSATAVVQRIREKFFKGHR--EAEFICVCDISKENKEVIQELNNCQV 412
Query: 92 ALNHVPAV------------------DNPAPSNYLLISGDRDFSNALHQLRMRR-YNILL 132
+ H+ A + AP+ +L+S D +F+ L LR R ++I+L
Sbjct: 413 TVAHINATAKNAADDKLRQSLRRFANTHTAPATVVLVSTDVNFALELSDLRHRHGFHIIL 472
Query: 133 AQPHKASAPLVAAAKSVWLWTSLVAGGPP 161
++AS L+ A + + ++ PP
Sbjct: 473 VHKNQASEALLHHANELIRFEEFISDLPP 501
>sp|B2GUN4|MARF1_XENTR Meiosis arrest female protein 1 homolog OS=Xenopus tropicalis
GN=marf1 PE=2 SV=1
Length = 1681
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 21/166 (12%)
Query: 15 APMASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGD 74
+P +T + Q V+WDIENC VP T+ + I L K + D
Sbjct: 325 SPDLATGQMQENLPPIGVFWDIENCSVPSGRSAVTVVKRIRERLFKGH--REAEFICVCD 382
Query: 75 TNRIPASVQHALSSTGIALNHVPAVDNPA------------------PSNYLLISGDRDF 116
++ V L++ + + H+ A A P+ +L+S D +F
Sbjct: 383 ISKENKEVIEELNNCQVTVAHINATAKNAADDKLRQSLRRFADTHTSPATVVLVSTDVNF 442
Query: 117 SNALHQLRMRR-YNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPP 161
+ L LR R ++I+L ++AS L+ A + + ++ PP
Sbjct: 443 ALELSDLRHRHSFHIILIHKNQASEALLHHAHELIHFEEFISDLPP 488
>sp|E1BP74|MARF1_BOVIN Meiosis arrest female protein 1 OS=Bos taurus GN=MARF1 PE=3 SV=2
Length = 1742
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 21/149 (14%)
Query: 32 VWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGI 91
V+WDIENC VP + Q I K + D ++ V L++ +
Sbjct: 353 VFWDIENCSVPSGRSATAVVQRIREKFFKGHR--EAEFICVCDISKENKEVIQELNNCQV 410
Query: 92 ALNHVPAV------------------DNPAPSNYLLISGDRDFSNALHQLRMRR-YNILL 132
+ H+ A + AP+ +L+S D +F+ L LR R ++I+L
Sbjct: 411 TVAHINATAKNAADDKLRQSLRRFANTHTAPATVVLVSTDVNFALELSDLRHRHGFHIIL 470
Query: 133 AQPHKASAPLVAAAKSVWLWTSLVAGGPP 161
++AS L+ A + + ++ PP
Sbjct: 471 VHKNQASEALLHHANELIRFEEFISDLPP 499
>sp|B2UXC6|HEM1_CLOBA Glutamyl-tRNA reductase OS=Clostridium botulinum (strain Alaska E43
/ Type E3) GN=hemA PE=3 SV=1
Length = 401
Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 20/144 (13%)
Query: 366 ELKSSYFESPNPASLNVPQK---GHAMPGGQASNRDSLNSRHSRGPEGPPSSSSSTTFPA 422
++K+SYF+S N +LN+ + +A+ G+ SR E P SS+S +
Sbjct: 112 QVKTSYFKSLNAKALNLELQRLFQYAITCGKKF------KSQSRLFEIPVSSASIVVNES 165
Query: 423 SSNG-------GWGTQGRLTPSEYVQGLIGVILLALNTLKI-ERVVPSEANITDCIRYGE 474
+ G+G GRLT + I + LA+ KI + +V N+ D + E
Sbjct: 166 INKDCKKFMVLGYGDVGRLTMKYLLAHNINEVYLAVRNKKIKDEIVDERVNVID---FEE 222
Query: 475 PKHRNTDVRKALNCAIEQHMVIKR 498
D+ ++C H+VIK+
Sbjct: 223 KNKYINDMDCVISCTSAPHIVIKK 246
>sp|B2TPD9|HEM1_CLOBB Glutamyl-tRNA reductase OS=Clostridium botulinum (strain Eklund 17B
/ Type B) GN=hemA PE=3 SV=1
Length = 401
Score = 40.8 bits (94), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 20/144 (13%)
Query: 366 ELKSSYFESPNPASLNVPQK---GHAMPGGQASNRDSLNSRHSRGPEGPPSSSSSTTFPA 422
++K+SYF+S N +LN+ + +A+ G+ SR E P SS+S +
Sbjct: 112 QVKTSYFKSLNAKALNLELQRLFQYAITCGKKF------KSQSRLFEIPVSSASIVVNES 165
Query: 423 SSNG-------GWGTQGRLTPSEYVQGLIGVILLALNTLKI-ERVVPSEANITDCIRYGE 474
+ G+G GRLT + I + LA+ KI + ++ N+ D + E
Sbjct: 166 INKDCKKFMVLGYGDVGRLTMKYLLAHNINEVYLAVRNKKIKDEIMDKRVNVID---FEE 222
Query: 475 PKHRNTDVRKALNCAIEQHMVIKR 498
D+ ++C H+VIK+
Sbjct: 223 KNKYINDMDCVISCTSAPHIVIKK 246
>sp|Q9Z6W0|SYG_CHLPN Glycine--tRNA ligase OS=Chlamydia pneumoniae GN=glyQS PE=3 SV=2
Length = 1010
Score = 36.2 bits (82), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 63/313 (20%), Positives = 115/313 (36%), Gaps = 31/313 (9%)
Query: 23 RQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNY--CGPVSISAYGDTNRIPA 80
RQ +T V+ +E P+ + +N++ +V+ + GP+ S + +
Sbjct: 343 RQVLTDHNIVYEGLEVLGSPRRL--ALLVKNVAPEVVQKAFEKKGPMLTSLFSPDGDVSP 400
Query: 81 SVQHALSSTGIALNHVPAVDNPAPSNYLLISGDRDFSNALH-QLRMRRYNILLAQPHKAS 139
Q +S G+ ++H + A ++G ++ LH ++R+R +IL+ +
Sbjct: 401 QGQQFFASQGVDISHYQDLSRHASLAIRTVNGS-EYLFLLHPEIRLRTADILMQELPLLI 459
Query: 140 APLVAAAKSVW-----------LWTSLVAGG--PPLASGESLLHTNDFGTFNPEDEPVQV 186
+ K VW W + G P+ G + N FG + + +
Sbjct: 460 QRMKFPKKMVWDNSGVEYARPIRWLVALYGEHILPITLGTIIASRNSFGHRQLDPRKISI 519
Query: 187 SQPMGNSNTGR----VSDTKLKGKYTKKPTNQPSISRVASAPVP-MQESKNNDYSYQFEH 241
S P T R V K + ++ S +++ P+P + E + F
Sbjct: 520 SSPQDYVETLRQACVVVSQKERRMIIEQGLRAHSSDTISAIPLPRLIEEATFLSEHPFVS 579
Query: 242 SQQ--KQFKKAPHEFFGGTGEPRSNPNFFPCHTDLSGGNGNNF---SGNFRNQHLLRPNN 296
Q +QF P E E ++ +FP H SG N F N N ++ N
Sbjct: 580 CGQFSEQFCALPKELL--IAEMVNHQKYFPTHETSSGAISNFFIVVCDNSPNDTIIEGNE 637
Query: 297 FPMQPNFPQDNFL 309
+ P FL
Sbjct: 638 KALTPRLTDGEFL 650
>sp|Q5U4T7|BIC1B_XENLA Protein bicaudal C homolog 1-B OS=Xenopus laevis GN=bicc1-b PE=2
SV=1
Length = 970
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 229 ESKNNDYSYQFEHSQQKQFKKAPHEFFGGTGEPRSNPNFFPCHTDLSGGNGNNFSGNFRN 288
+S +NDYS ++KQ K A H S+ N+ C + L+G NG N + +F+
Sbjct: 820 DSSHNDYSSSIGSPKRKQNKSAEHYL--------SSSNYMDCISSLTGSNGCNLNSSFKG 871
Query: 289 QHL 291
L
Sbjct: 872 SDL 874
>sp|Q9IA00|BIC1A_XENLA Protein bicaudal C homolog 1-A OS=Xenopus laevis GN=bicc1-a PE=2
SV=1
Length = 963
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 229 ESKNNDYSYQFEHSQQKQFKKAPHEFFGGTGEPRSNPNFFPCHTDLSGGNGNNFSGNFRN 288
+S NDYS ++KQ K A H S+ N+ C + L+G NG N + +F+
Sbjct: 813 DSSQNDYSSSIGSPKRKQNKSAEHYL--------SSSNYMDCISSLTGSNGCNLNSSFKG 864
Query: 289 QHL 291
L
Sbjct: 865 SDL 867
>sp|Q8NFP9|NBEA_HUMAN Neurobeachin OS=Homo sapiens GN=NBEA PE=1 SV=3
Length = 2946
Score = 32.7 bits (73), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 53/143 (37%), Gaps = 13/143 (9%)
Query: 309 LPHNSQNHGF--RPIPPSSNGPRFPPAPPANLPDIGKLNMSEYP----NYAQNCPNFHPQ 362
+PH S NHGF + IP S G F PA PD K + P + P+
Sbjct: 1617 IPHPSLNHGFLAKLIPEQSFGHSFYKETPAAFPDTIKEKETPTPGEDIQVESSIPHTDSG 1676
Query: 363 SGEELKSSYFESPNPASLNVPQKGHAMPGGQASNRDSLNSRHSRGPEGPPSSSSSTTFPA 422
GEE +S N A L P + +L+S + E + S T PA
Sbjct: 1677 IGEEQVASIL---NGAELETSTG----PDAMSELLSTLSSEVKKSQESLTENPSETLKPA 1729
Query: 423 SSNGGWGTQGRLTPSEYVQGLIG 445
+S + E ++ L+
Sbjct: 1730 TSISSISQTKGINVKEILKSLVA 1752
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 252,905,875
Number of Sequences: 539616
Number of extensions: 11691465
Number of successful extensions: 26529
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 225
Number of HSP's that attempted gapping in prelim test: 25892
Number of HSP's gapped (non-prelim): 790
length of query: 617
length of database: 191,569,459
effective HSP length: 124
effective length of query: 493
effective length of database: 124,657,075
effective search space: 61455937975
effective search space used: 61455937975
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)