Query 007121
Match_columns 617
No_of_seqs 133 out of 228
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 17:41:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007121.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007121hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qip_A Protein of unknown func 99.3 5.7E-13 2E-17 122.1 3.6 129 27-156 9-163 (165)
2 1jeo_A MJ1247, hypothetical pr 63.4 19 0.00065 31.9 7.2 86 65-152 41-132 (180)
3 2xhz_A KDSD, YRBH, arabinose 5 60.7 31 0.0011 30.5 8.1 87 65-152 50-147 (183)
4 2f06_A Conserved hypothetical 58.8 28 0.00097 30.2 7.4 78 52-131 56-136 (144)
5 3sho_A Transcriptional regulat 54.9 33 0.0011 30.4 7.3 86 65-151 40-137 (187)
6 1vim_A Hypothetical protein AF 51.5 33 0.0011 31.4 6.9 86 65-151 48-139 (200)
7 1m3s_A Hypothetical protein YC 48.1 50 0.0017 29.3 7.3 86 65-151 38-129 (186)
8 3fxa_A SIS domain protein; str 47.8 24 0.00081 32.0 5.2 87 65-152 46-143 (201)
9 3i9v_6 NADH-quinone oxidoreduc 43.8 13 0.00045 35.8 3.0 27 431-460 138-164 (181)
10 3etn_A Putative phosphosugar i 41.0 1.2E+02 0.0041 28.3 9.0 86 65-151 60-158 (220)
11 3o6p_A Peptide ABC transporter 39.1 8.4 0.00029 35.3 0.8 29 474-502 17-45 (229)
12 3lvu_A ABC transporter, peripl 35.4 15 0.00052 34.2 1.9 29 474-502 14-42 (258)
13 1eci_A Ectatomin; pore-forming 34.8 29 0.00098 25.7 2.8 34 526-566 3-36 (37)
14 3kn3_A Putative periplasmic pr 32.6 37 0.0013 33.4 4.2 51 499-549 185-239 (242)
15 4e16_A Precorrin-4 C(11)-methy 32.2 3.4E+02 0.012 25.9 11.3 88 8-98 11-113 (253)
16 3mel_A Thiamin pyrophosphokina 31.9 98 0.0034 29.8 7.0 40 56-98 34-73 (222)
17 3muq_A Uncharacterized conserv 30.4 29 0.00099 33.8 3.1 69 481-549 153-234 (237)
18 3pam_A Transmembrane protein; 29.8 19 0.00066 33.5 1.7 28 475-502 15-42 (259)
19 3qk7_A Transcriptional regulat 29.3 2.4E+02 0.0082 26.2 9.0 42 48-92 26-67 (294)
20 3lm8_A Thiamine pyrophosphokin 26.4 1.1E+02 0.0037 29.6 6.2 38 58-98 38-75 (222)
21 2q5c_A NTRC family transcripti 25.9 1.8E+02 0.0061 27.2 7.5 72 44-133 77-148 (196)
22 2l82_A Designed protein OR32; 23.3 4.1E+02 0.014 24.4 9.0 88 49-139 13-115 (162)
23 2ek0_A Stage V sporulation pro 23.0 36 0.0012 29.8 1.9 60 36-98 1-65 (90)
24 1x92_A APC5045, phosphoheptose 22.9 1.4E+02 0.0048 26.7 6.0 50 102-152 112-167 (199)
25 3ihk_A Thiamin pyrophosphokina 22.6 2.1E+02 0.0072 27.4 7.4 40 56-98 30-69 (218)
26 2qbu_A Precorrin-2 methyltrans 22.3 4.2E+02 0.014 24.4 9.2 121 8-134 9-176 (232)
27 3eua_A Putative fructose-amino 22.2 3.4E+02 0.011 26.9 9.1 99 52-151 11-124 (329)
28 3jy6_A Transcriptional regulat 21.9 1.8E+02 0.0061 26.6 6.6 16 48-63 23-38 (276)
29 3k94_A Thiamin pyrophosphokina 21.7 1.2E+02 0.004 29.4 5.5 76 58-137 37-131 (223)
30 2a3n_A Putative glucosamine-fr 20.1 2.8E+02 0.0097 27.7 8.1 87 65-152 55-153 (355)
No 1
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=99.31 E-value=5.7e-13 Score=122.08 Aligned_cols=129 Identities=17% Similarity=0.199 Sum_probs=95.3
Q ss_pred CCceEEEEeccCCCCCCCCChhhHHHHHHHHHHhcCcccceE-EEEEecCCC--CchHHHHHhhhcCceeeeccC-----
Q 007121 27 TAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVS-ISAYGDTNR--IPASVQHALSSTGIALNHVPA----- 98 (617)
Q Consensus 27 ~AkTsVFWDIENCPVP~G~da~~Va~nIr~ALrklGY~GPVS-IrAYGDls~--ip~~Vl~aLsSSGIsLiHVPa----- 98 (617)
..+++||||.+||..... +......+++..++.+.-.|.+. .++||++.. .....+++|...|++++..|.
T Consensus 9 ~~rvavfiD~~Nl~~~~~-~~~~~~~d~~~l~~~~~~~g~l~~~~~Y~~~~~~~~~~~~~~~L~~~g~~v~~~p~~~~~~ 87 (165)
T 2qip_A 9 KEKIAILVDVQNVYYTCR-EAYRSNFDYNQFWYVATQEKEVVSAKAYAIASNDPKQRQFHHILRGVGFEVMLKPYIQRRD 87 (165)
T ss_dssp CEEEEEEEEHHHHHHHHH-HHHSSCBCHHHHHHHHTTTEEEEEEEEEECCCCCHHHHHHHHHHHHHTCEEEECCCCCCSS
T ss_pred CCcEEEEEEHHHHHHHHH-HHcCCCCCHHHHHHHHhcCCEEEEEEEEEccCCchhHHHHHHHHHHCCcEEEEEeeeeccC
Confidence 358999999999985321 00000011333344333457664 799998764 223567899999999987773
Q ss_pred ------------C----CCCCCceEEEEeCCcchHHHHHHHhcC-CCeEEEeccCC-CChhHHhhccceEeehhhh
Q 007121 99 ------------V----DNPAPSNYLLISGDRDFSNALHQLRMR-RYNILLAQPHK-ASAPLVAAAKSVWLWTSLV 156 (617)
Q Consensus 99 ------------l----DNPpPANIMLISGDrDFS~aLs~LR~R-GYNILLAqP~~-aS~~L~aaA~~vWlWeSLL 156 (617)
+ ..+..++++|+|||.||.+++..||++ |..|+++.... ++..|..+|+.++.+++++
T Consensus 88 ~~~k~~~Dv~laiD~~~~a~~~d~~vLvSgD~DF~plv~~lr~~~G~~V~v~g~~~~~s~~L~~~ad~fi~l~~~~ 163 (165)
T 2qip_A 88 GSAKGDWDVGITLDAIEIAPDVDRVILVSGDGDFSLLVERIQQRYNKKVTVYGVPRLTSQTLIDCADNFVAIDDDF 163 (165)
T ss_dssp CCCSCCCHHHHHHHHHHHGGGCSEEEEECCCGGGHHHHHHHHHHHCCEEEEEECGGGSCHHHHHHSSEEEECSGGG
T ss_pred CccCCCccHHHHHHHHHhhccCCEEEEEECChhHHHHHHHHHHHcCcEEEEEeCCCcChHHHHHhCCEEEecchhh
Confidence 1 136789999999999999999999997 99999998654 7889999999999998875
No 2
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=63.38 E-value=19 Score=31.89 Aligned_cols=86 Identities=16% Similarity=0.094 Sum_probs=56.2
Q ss_pred cceEEEEEecCCCCchHHHHHhhhcCceeeeccC--C-CCCCCceEEEEeCCc---chHHHHHHHhcCCCeEEEeccCCC
Q 007121 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPA--V-DNPAPSNYLLISGDR---DFSNALHQLRMRRYNILLAQPHKA 138 (617)
Q Consensus 65 GPVSIrAYGDls~ip~~Vl~aLsSSGIsLiHVPa--l-DNPpPANIMLISGDr---DFS~aLs~LR~RGYNILLAqP~~a 138 (617)
..|-|.+.|.-..+.......|...|+....+.. . .-.+-+-+++||... +...++..++++|-.|+++.....
T Consensus 41 ~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~ 120 (180)
T 1jeo_A 41 KKIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVGETTTPSYEKDDLLILISGSGRTESVLTVAKKAKNINNNIIAIVCECG 120 (180)
T ss_dssp SSEEEECCHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEESSCC
T ss_pred CEEEEEeecHHHHHHHHHHHHHHHcCCeEEEeCCCccccCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 3555655565434444556667778876655543 1 123456778888654 566778888899999999987655
Q ss_pred ChhHHhhccceEee
Q 007121 139 SAPLVAAAKSVWLW 152 (617)
Q Consensus 139 S~~L~aaA~~vWlW 152 (617)
+ |...|+.++.-
T Consensus 121 s--l~~~ad~~l~~ 132 (180)
T 1jeo_A 121 N--VVEFADLTIPL 132 (180)
T ss_dssp G--GGGGCSEEEEC
T ss_pred h--HHHhCCEEEEe
Confidence 5 77778866553
No 3
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=60.70 E-value=31 Score=30.52 Aligned_cols=87 Identities=15% Similarity=0.181 Sum_probs=58.8
Q ss_pred cceEEEEEecCCCCchHHHHHhhhcCceeeeccC-------CCC-CCCceEEEEeCCc---chHHHHHHHhcCCCeEEEe
Q 007121 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPA-------VDN-PAPSNYLLISGDR---DFSNALHQLRMRRYNILLA 133 (617)
Q Consensus 65 GPVSIrAYGDls~ip~~Vl~aLsSSGIsLiHVPa-------lDN-PpPANIMLISGDr---DFS~aLs~LR~RGYNILLA 133 (617)
+.|-|.+.|.-..+.......|...|+....+.. ... .+-+-+++||... +...++..++++|..|+++
T Consensus 50 ~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~I 129 (183)
T 2xhz_A 50 GKVVVMGMGASGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEITALIPVLKRLHVPLICI 129 (183)
T ss_dssp SCEEEEECHHHHHHHHHHHHHHHTTTCCEEECCTTHHHHHTSTTCCTTCEEEEECSSSCCHHHHHHHHHHHTTTCCEEEE
T ss_pred CeEEEEeecHHHHHHHHHHHHHHhcCceEEEeCchHHhhhhhccCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEE
Confidence 4777777776544445566777778887665543 122 3456778888654 5667788888999999999
Q ss_pred ccCCCChhHHhhccceEee
Q 007121 134 QPHKASAPLVAAAKSVWLW 152 (617)
Q Consensus 134 qP~~aS~~L~aaA~~vWlW 152 (617)
..... .+|...|+.++..
T Consensus 130 T~~~~-s~la~~ad~~l~~ 147 (183)
T 2xhz_A 130 TGRPE-SSMARAADVHLCV 147 (183)
T ss_dssp ESCTT-SHHHHHSSEEEEC
T ss_pred ECCCC-ChhHHhCCEEEEe
Confidence 76544 3677778866553
No 4
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=58.82 E-value=28 Score=30.19 Aligned_cols=78 Identities=13% Similarity=0.220 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCcccceE-EEEEe--cCCCCchHHHHHhhhcCceeeeccCCCCCCCceEEEEeCCcchHHHHHHHhcCCC
Q 007121 52 QNISSALVKMNYCGPVS-ISAYG--DTNRIPASVQHALSSTGIALNHVPAVDNPAPSNYLLISGDRDFSNALHQLRMRRY 128 (617)
Q Consensus 52 ~nIr~ALrklGY~GPVS-IrAYG--Dls~ip~~Vl~aLsSSGIsLiHVPalDNPpPANIMLISGDrDFS~aLs~LR~RGY 128 (617)
...+.+|++.||.-... +...+ |....-..+.+.|.+.||.+.+.-... ......++|.- .|...++..|+..||
T Consensus 56 ~~a~~~L~~~G~~v~~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~-~~~~~~~~i~~-~d~~~A~~~L~~~g~ 133 (144)
T 2f06_A 56 DKAYKALKDNHFAVNITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-NNNVANVVIRP-SNMDKCIEVLKEKKV 133 (144)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-ETTEEEEEEEE-SCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCeEeeeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc-cCCcEEEEEEe-CCHHHHHHHHHHcCC
Confidence 44567788888853332 33322 333334567888999999885433321 11223344433 478888999999999
Q ss_pred eEE
Q 007121 129 NIL 131 (617)
Q Consensus 129 NIL 131 (617)
.|+
T Consensus 134 ~v~ 136 (144)
T 2f06_A 134 DLL 136 (144)
T ss_dssp EEE
T ss_pred EEe
Confidence 984
No 5
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=54.95 E-value=33 Score=30.42 Aligned_cols=86 Identities=20% Similarity=0.181 Sum_probs=57.2
Q ss_pred cceEEEEEecCCCCchHHHHHhhhcCceeeecc-C-------CCC-CCCceEEEEeCCc---chHHHHHHHhcCCCeEEE
Q 007121 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVP-A-------VDN-PAPSNYLLISGDR---DFSNALHQLRMRRYNILL 132 (617)
Q Consensus 65 GPVSIrAYGDls~ip~~Vl~aLsSSGIsLiHVP-a-------lDN-PpPANIMLISGDr---DFS~aLs~LR~RGYNILL 132 (617)
..|-|.+.|.-..+.......|...|+....++ . ... .+-+-+++||... +...++..++++|..|++
T Consensus 40 ~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~ 119 (187)
T 3sho_A 40 DHVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIGVSVWRYLRDTVAALAGAAERGVPTMA 119 (187)
T ss_dssp SEEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEE
Confidence 355566666544444556677888898877666 2 122 3445667777553 566778888899999999
Q ss_pred eccCCCChhHHhhccceEe
Q 007121 133 AQPHKASAPLVAAAKSVWL 151 (617)
Q Consensus 133 AqP~~aS~~L~aaA~~vWl 151 (617)
+..... .+|...|+.++.
T Consensus 120 IT~~~~-s~l~~~ad~~l~ 137 (187)
T 3sho_A 120 LTDSSV-SPPARIADHVLV 137 (187)
T ss_dssp EESCTT-SHHHHHCSEEEE
T ss_pred EeCCCC-CcchhhCcEEEE
Confidence 986544 467777776655
No 6
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=51.49 E-value=33 Score=31.43 Aligned_cols=86 Identities=15% Similarity=0.135 Sum_probs=57.1
Q ss_pred cceEEEEEecCCCCchHHHHHhhhcCceeeeccC--C-CCCCCceEEEEeCCc---chHHHHHHHhcCCCeEEEeccCCC
Q 007121 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPA--V-DNPAPSNYLLISGDR---DFSNALHQLRMRRYNILLAQPHKA 138 (617)
Q Consensus 65 GPVSIrAYGDls~ip~~Vl~aLsSSGIsLiHVPa--l-DNPpPANIMLISGDr---DFS~aLs~LR~RGYNILLAqP~~a 138 (617)
+.|-|...|.-..+-..+...|...|+....+.. . .-.+-+-+++||... +...++..++++|-.|+++.....
T Consensus 48 ~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~ 127 (200)
T 1vim_A 48 RSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVGETVTPRITDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRD 127 (200)
T ss_dssp SCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCTT
T ss_pred CEEEEEEecHHHHHHHHHHHHHHhcCCeEEEeCCccccCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 4555555555434445566677788887665544 1 123446778888654 567788888899999999986544
Q ss_pred ChhHHhhccceEe
Q 007121 139 SAPLVAAAKSVWL 151 (617)
Q Consensus 139 S~~L~aaA~~vWl 151 (617)
+ +|...|+.++.
T Consensus 128 s-~La~~ad~~l~ 139 (200)
T 1vim_A 128 S-SLAKMADVVMV 139 (200)
T ss_dssp S-HHHHHCSEEEE
T ss_pred C-hHHHhCCEEEE
Confidence 3 67777886654
No 7
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=48.11 E-value=50 Score=29.31 Aligned_cols=86 Identities=9% Similarity=0.030 Sum_probs=54.2
Q ss_pred cceEEEEEecCCCCchHHHHHhhhcCceeeeccC--C-CCCCCceEEEEeCCc---chHHHHHHHhcCCCeEEEeccCCC
Q 007121 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPA--V-DNPAPSNYLLISGDR---DFSNALHQLRMRRYNILLAQPHKA 138 (617)
Q Consensus 65 GPVSIrAYGDls~ip~~Vl~aLsSSGIsLiHVPa--l-DNPpPANIMLISGDr---DFS~aLs~LR~RGYNILLAqP~~a 138 (617)
..|-|...|.-..+.......|...|+....+.. . .-.+-+-+++||... +...++..++++|-.|+++.....
T Consensus 38 ~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~ 117 (186)
T 1m3s_A 38 HQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPE 117 (186)
T ss_dssp SCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred CeEEEEecCHHHHHHHHHHHHHHhcCCeEEEeCcccccCCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 3455555554333444556667777876655543 1 123346678888654 566678888899999999987554
Q ss_pred ChhHHhhccceEe
Q 007121 139 SAPLVAAAKSVWL 151 (617)
Q Consensus 139 S~~L~aaA~~vWl 151 (617)
.+|...|+.++.
T Consensus 118 -s~l~~~ad~~l~ 129 (186)
T 1m3s_A 118 -SSIGKQADLIIR 129 (186)
T ss_dssp -SHHHHHCSEEEE
T ss_pred -CchHHhCCEEEE
Confidence 367777775554
No 8
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=47.75 E-value=24 Score=32.00 Aligned_cols=87 Identities=10% Similarity=0.150 Sum_probs=58.3
Q ss_pred cceEEEEEecCCCCchHHHHHhhhcCceeeeccC-------C-CCCCCceEEEEeCCc---chHHHHHHHhcCCCeEEEe
Q 007121 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPA-------V-DNPAPSNYLLISGDR---DFSNALHQLRMRRYNILLA 133 (617)
Q Consensus 65 GPVSIrAYGDls~ip~~Vl~aLsSSGIsLiHVPa-------l-DNPpPANIMLISGDr---DFS~aLs~LR~RGYNILLA 133 (617)
+.|-|.+.|.-..+.......|...|+....+.. + .-.+-+-+++||... +...++..++++|-.|+++
T Consensus 46 ~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dvvI~iS~sG~t~~~~~~~~~ak~~g~~vi~I 125 (201)
T 3fxa_A 46 GKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGV 125 (201)
T ss_dssp SCEEEECCTHHHHHHHHHHHHHHHTTCCEEECCHHHHTTTGGGGCCTTCEEEEECSSSCCHHHHTTHHHHHHHTCEEEEE
T ss_pred CcEEEEEecHHHHHHHHHHHHHHhcCCcEEEeCchHHHhhhhhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEE
Confidence 4676777666544445566667788887766654 1 123446778888654 5566788888999999999
Q ss_pred ccCCCChhHHhhccceEee
Q 007121 134 QPHKASAPLVAAAKSVWLW 152 (617)
Q Consensus 134 qP~~aS~~L~aaA~~vWlW 152 (617)
.....+ +|...|+.++..
T Consensus 126 T~~~~s-~l~~~ad~~l~~ 143 (201)
T 3fxa_A 126 TENPDS-VIAKEADIFFPV 143 (201)
T ss_dssp ESCTTS-HHHHHCSEEEEC
T ss_pred ECCCCC-hhHHhCCEEEEc
Confidence 865544 577777766654
No 9
>3i9v_6 NADH-quinone oxidoreductase subunit 6; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_6* 2fug_6* 3iam_6* 3ias_6* 3m9s_6*
Probab=43.80 E-value=13 Score=35.80 Aligned_cols=27 Identities=11% Similarity=0.063 Sum_probs=22.6
Q ss_pred CCCCCCccchhhHHHHHHHHHhhhhccccC
Q 007121 431 QGRLTPSEYVQGLIGVILLALNTLKIERVV 460 (617)
Q Consensus 431 ~g~~~~s~~~qgli~~il~al~~lk~eki~ 460 (617)
+|||+ .++.+++.|+..++.+|.|++-
T Consensus 138 PGCPP---~Pe~il~~l~~l~~ki~~~~~~ 164 (181)
T 3i9v_6 138 PGCPP---RPEALIYAVMQLQKKVRGQAYN 164 (181)
T ss_dssp CCSSC---CHHHHHHHHHHHHHHHTTCCBC
T ss_pred eCCCC---CHHHHHHHHHHHHHHHhhcccc
Confidence 89998 4667888889999999998863
No 10
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=40.97 E-value=1.2e+02 Score=28.29 Aligned_cols=86 Identities=17% Similarity=0.230 Sum_probs=57.0
Q ss_pred cceEEEEEecCCCCchHHHHHhhhcCceeeeccC-------C-CCCCCceEEEEeCCc---chHHHHHHHhc--CCCeEE
Q 007121 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPA-------V-DNPAPSNYLLISGDR---DFSNALHQLRM--RRYNIL 131 (617)
Q Consensus 65 GPVSIrAYGDls~ip~~Vl~aLsSSGIsLiHVPa-------l-DNPpPANIMLISGDr---DFS~aLs~LR~--RGYNIL 131 (617)
+.|-|...|.-..+.......|...|+....+.. . .-.+-+-+++||... +...++..+++ +|-.|+
T Consensus 60 ~~I~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~DlvI~iS~SG~t~~~i~~~~~ak~~~~Ga~vI 139 (220)
T 3etn_A 60 GKLVTSGMGKAGQIAMNIATTFCSTGIPSVFLHPSEAQHGDLGILQENDLLLLISNSGKTREIVELTQLAHNLNPGLKFI 139 (220)
T ss_dssp CCEEEECSHHHHHHHHHHHHHHHHTTCCEEECCTTGGGBTGGGGCCTTCEEEEECSSSCCHHHHHHHHHHHHHCTTCEEE
T ss_pred CEEEEEEecHHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhhccCCCCCEEEEEcCCCCCHHHHHHHHHHHhcCCCCeEE
Confidence 4566666665444444566677788887665554 1 113446677787553 56778888999 999999
Q ss_pred EeccCCCChhHHhhccceEe
Q 007121 132 LAQPHKASAPLVAAAKSVWL 151 (617)
Q Consensus 132 LAqP~~aS~~L~aaA~~vWl 151 (617)
++.....+ +|...|+.++.
T Consensus 140 ~IT~~~~s-~La~~aD~~l~ 158 (220)
T 3etn_A 140 VITGNPDS-PLASESDVCLS 158 (220)
T ss_dssp EEESCTTS-HHHHHSSEEEE
T ss_pred EEECCCCC-hhHHhCCEEEE
Confidence 99865444 67777776655
No 11
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=39.13 E-value=8.4 Score=35.34 Aligned_cols=29 Identities=28% Similarity=0.588 Sum_probs=24.9
Q ss_pred CCCCCCchHHHHHHHHHHhhHHHHhhcCC
Q 007121 474 EPKHRNTDVRKALNCAIEQHMVIKRSLGA 502 (617)
Q Consensus 474 d~~~~~~dvkkale~ai~~~~vv~~~~g~ 502 (617)
.+-+.+..|||||..||-.+.+|+..++.
T Consensus 17 ~~p~~d~~vRqAl~~aiDr~~i~~~~~~g 45 (229)
T 3o6p_A 17 KSPFRNANLRKAISYSIDRKALVESILGD 45 (229)
T ss_dssp TCGGGCHHHHHHHHHTCCHHHHHHTTTCS
T ss_pred cccCCCHHHHHHHHHHhhHHHHHHHHHcC
Confidence 45577889999999999999999988654
No 12
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=35.41 E-value=15 Score=34.24 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=25.3
Q ss_pred CCCCCCchHHHHHHHHHHhhHHHHhhcCC
Q 007121 474 EPKHRNTDVRKALNCAIEQHMVIKRSLGA 502 (617)
Q Consensus 474 d~~~~~~dvkkale~ai~~~~vv~~~~g~ 502 (617)
.+-+.+..|||||..||-++.||+..++.
T Consensus 14 ~~p~~d~~vRqAl~~aiDr~~iv~~~~~g 42 (258)
T 3lvu_A 14 RAPFDDWRLREALLLAFNFEFINDTVTGG 42 (258)
T ss_dssp STTTTSHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred CCcccCHHHHHHHHHhcCHHHHHHHHhcc
Confidence 45678899999999999999999998654
No 13
>1eci_A Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=34.77 E-value=29 Score=25.70 Aligned_cols=34 Identities=24% Similarity=0.557 Sum_probs=27.3
Q ss_pred CcHHHHHHHHHHHcCccchhhhhhhhhhHHHHHHHHhhhhh
Q 007121 526 YPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLP 566 (617)
Q Consensus 526 ~pk~~~d~i~~fl~s~~g~sai~~s~~ry~aa~ilk~~cl~ 566 (617)
-||.+|+.|---+.+ |+-.|-=.-|+.+|+.|=|
T Consensus 3 ipkkiweticpt~~~-------~akkc~g~iat~ik~~c~k 36 (37)
T 1eci_A 3 IPKKIWETVCPTVEP-------WAKKCSGDIATYIKRECGK 36 (37)
T ss_dssp CCHHHHHHHHHHHHH-------HHHTBCHHHHHHHHHHHHC
T ss_pred chHHHHHHhCcchHH-------HHHHccchHHHHHHHHhcc
Confidence 488999999766543 6778888899999999954
No 14
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=32.61 E-value=37 Score=33.43 Aligned_cols=51 Identities=14% Similarity=0.157 Sum_probs=36.5
Q ss_pred hcCCcceeecCCCcceeeec-cCCCCCCCcHH---HHHHHHHHHcCccchhhhhh
Q 007121 499 SLGALPLYVPKNEKLWNCEN-LYGNPNQYPKE---VWDRIQKFLTSSSGRSAIMA 549 (617)
Q Consensus 499 ~~g~~~l~~~kne~lwkcvn-~~~n~~~~pk~---~~d~i~~fl~s~~g~sai~~ 549 (617)
+-.+|.+++-.++.|-+--- |-.||..||.. .=.+.-+||.|+.|..+|.+
T Consensus 185 ~~~~l~i~~~gd~~l~n~y~~~~v~p~~~~~~~~~~a~~f~~~l~s~~~q~~i~~ 239 (242)
T 3kn3_A 185 GKPPMVIVLEGDNTLKNFYSIMAVNPKRCEKADYKGAKQFIDWIVSEKMQAEIAN 239 (242)
T ss_dssp SSCSCEEEECCCGGGCCEEEEEEECTTTCTTSCHHHHHHHHHHHHSHHHHHHHHT
T ss_pred CCCCeEEEEcCCcceEeeeEEEEECcccCCccCHHHHHHHHHHHcCHHHHHHHHh
Confidence 34468888888888887766 77788778743 33456667888888777753
No 15
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile}
Probab=32.21 E-value=3.4e+02 Score=25.91 Aligned_cols=88 Identities=13% Similarity=0.118 Sum_probs=56.5
Q ss_pred ccccCCCCCccchhhhhhcCCceEEEEec-------cCCCCC------CCCChhhHHHHHHHHHHhcCcccceEEEEEec
Q 007121 8 TVTASVSAPMASTAERQYVTAKTSVWWDI-------ENCQVP------KNCDPHTIAQNISSALVKMNYCGPVSISAYGD 74 (617)
Q Consensus 8 ~~~~~~~~~~t~~ae~rya~AkTsVFWDI-------ENCPVP------~G~da~~Va~nIr~ALrklGY~GPVSIrAYGD 74 (617)
|+|-|++..-|-++......+.+-++.|- +-++.- ......++...|...+++ ...|.+-+-||
T Consensus 11 G~GpG~~~~lT~~A~~~L~~advv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---g~~V~~l~~GD 87 (253)
T 4e16_A 11 GAGPGDKELITLKGYKLLSNADVVIYAGSLVNPELLEYCKEDCQIHNSAHMDLQEIIDVMREGIEN---NKSVVRLQTGD 87 (253)
T ss_dssp ECBSSCGGGSCHHHHHHHHHCSEEEECTTTSCGGGGGGSCTTCEEEEGGGCCHHHHHHHHHHHHHT---TCCEEEEESBC
T ss_pred eCCCCCHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHhhcCCCCEEEecCCCCHHHHHHHHHHHHHC---CCcEEEEeCCC
Confidence 44566666889999999999998888762 112110 012234455566655543 12566666899
Q ss_pred CCCC--chHHHHHhhhcCceeeeccC
Q 007121 75 TNRI--PASVQHALSSTGIALNHVPA 98 (617)
Q Consensus 75 ls~i--p~~Vl~aLsSSGIsLiHVPa 98 (617)
-.-. -..+.++|...||.+.-+|.
T Consensus 88 P~i~~~~~~l~~~l~~~gi~veviPG 113 (253)
T 4e16_A 88 FSIYGSIREQVEDLNKLNIDYDCTPG 113 (253)
T ss_dssp TTTTCCHHHHHHHHHHHTCCEEEECC
T ss_pred CccccCHHHHHHHHHHCCCCEEEECC
Confidence 5533 34567888889999988886
No 16
>3mel_A Thiamin pyrophosphokinase family protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; HET: TPP; 2.79A {Enterococcus faecalis}
Probab=31.86 E-value=98 Score=29.84 Aligned_cols=40 Identities=23% Similarity=0.211 Sum_probs=31.1
Q ss_pred HHHHhcCcccceEEEEEecCCCCchHHHHHhhhcCceeeeccC
Q 007121 56 SALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPA 98 (617)
Q Consensus 56 ~ALrklGY~GPVSIrAYGDls~ip~~Vl~aLsSSGIsLiHVPa 98 (617)
..|.++||.-. .++||+..++.+.++.+.+.|+.++..|.
T Consensus 34 ~~l~~~g~~Pd---~ivGDfDSi~~~~~~~~~~~~~~~~~~~~ 73 (222)
T 3mel_A 34 LHLLEADLPLQ---LAVGDFDSLSREEYHFVQETTETLIQAPA 73 (222)
T ss_dssp HHHHTTTCCCC---EEEECCTTSCTTHHHHHHHHCSSEEECCS
T ss_pred HHHHHCCCCCC---EEEeCcccCCHHHHHHHHhcCCcEEECCc
Confidence 34556777543 47799999999999999999998877664
No 17
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=30.44 E-value=29 Score=33.79 Aligned_cols=69 Identities=23% Similarity=0.300 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHhhHHH---------HhhcCCcceeecCCCcceeeec-cCCCCCCCc---HHHHHHHHHHHcCccchhhh
Q 007121 481 DVRKALNCAIEQHMVI---------KRSLGALPLYVPKNEKLWNCEN-LYGNPNQYP---KEVWDRIQKFLTSSSGRSAI 547 (617)
Q Consensus 481 dvkkale~ai~~~~vv---------~~~~g~~~l~~~kne~lwkcvn-~~~n~~~~p---k~~~d~i~~fl~s~~g~sai 547 (617)
-.-.+|..|.|.++.+ .++-++|.+++-+++.|.+--- +-.||..|| .|.=.+.-+||.|+.|...|
T Consensus 153 gm~~~l~~a~~~~~y~l~dr~t~l~~~~~~~l~i~~~gd~~l~n~y~v~~v~p~~~~~~~~~~a~~f~~wl~s~~gQ~~i 232 (237)
T 3muq_A 153 GMGPTLNMASEMQGYTMSDRGTWLAYQNKLDLEILFQGDEKLFNPYQVILVNPERYPTINYQGAKAFSDWLVNPRGQELI 232 (237)
T ss_dssp CHHHHHHHHHHTTCBEEEEHHHHHHHGGGCSCEEEECCCGGGEEEEEEEEECTTTCTTSCHHHHHHHHHHHHSHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEechHHhhccccCCeEEEEcCCCceeeeeEEEEECcccCCccCHHHHHHHHHHHcCHHHHHHH
Confidence 3456777777776532 2344478999999999988766 778887788 34455667788898888777
Q ss_pred hh
Q 007121 548 MA 549 (617)
Q Consensus 548 ~~ 549 (617)
.+
T Consensus 233 ~~ 234 (237)
T 3muq_A 233 NG 234 (237)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 18
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=29.78 E-value=19 Score=33.54 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=24.4
Q ss_pred CCCCCchHHHHHHHHHHhhHHHHhhcCC
Q 007121 475 PKHRNTDVRKALNCAIEQHMVIKRSLGA 502 (617)
Q Consensus 475 ~~~~~~dvkkale~ai~~~~vv~~~~g~ 502 (617)
+-+.+..|||||..||-.+.||+..++.
T Consensus 15 ~p~~d~~vRqAi~~aiDr~~i~~~v~~g 42 (259)
T 3pam_A 15 TLFKDKRVRQALSILFDFEWVNHHLFNN 42 (259)
T ss_dssp GGGCSHHHHHHHHHHCCHHHHHHHTSCS
T ss_pred ccccCHHHHHHHHHHhhHHHHHHHHhcc
Confidence 4467889999999999999999998654
No 19
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=29.28 E-value=2.4e+02 Score=26.18 Aligned_cols=42 Identities=12% Similarity=0.022 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHhcCcccceEEEEEecCCCCchHHHHHhhhcCce
Q 007121 48 HTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIA 92 (617)
Q Consensus 48 ~~Va~nIr~ALrklGY~GPVSIrAYGDls~ip~~Vl~aLsSSGIs 92 (617)
..+...|+.++++.||. +.+....+ ......+++.|.+.+|.
T Consensus 26 ~~~~~gi~~~a~~~g~~--~~~~~~~~-~~~~~~~~~~l~~~~vd 67 (294)
T 3qk7_A 26 LEMISWIGIELGKRGLD--LLLIPDEP-GEKYQSLIHLVETRRVD 67 (294)
T ss_dssp HHHHHHHHHHHHHTTCE--EEEEEECT-TCCCHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHCCCE--EEEEeCCC-hhhHHHHHHHHHcCCCC
Confidence 46888899999998883 44433333 33334556666655543
No 20
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=26.40 E-value=1.1e+02 Score=29.56 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=30.9
Q ss_pred HHhcCcccceEEEEEecCCCCchHHHHHhhhcCceeeeccC
Q 007121 58 LVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPA 98 (617)
Q Consensus 58 LrklGY~GPVSIrAYGDls~ip~~Vl~aLsSSGIsLiHVPa 98 (617)
|.++||.-. .+.||+..++.+.++.+.+.|+.+++.|.
T Consensus 38 l~~~g~~Pd---~ivGDfDSi~~~~~~~~~~~~~~i~~~p~ 75 (222)
T 3lm8_A 38 LLDAGIIPV---EAFGDFDSITEQERRRIEKAAPALHVYQA 75 (222)
T ss_dssp HHHHTCCCS---EEESCSTTSCHHHHHHHHHHCTTCEEECC
T ss_pred HHHcCCCCc---EEEeCcccCCHHHHHHHHhcCCeEEEeCC
Confidence 445576543 47799999999999999999999999984
No 21
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=25.87 E-value=1.8e+02 Score=27.18 Aligned_cols=72 Identities=11% Similarity=0.252 Sum_probs=48.4
Q ss_pred CCChhhHHHHHHHHHHhcCcccceEEEEEecCCCCchHHHHHhhhcCceeeeccCCCCCCCceEEEEeCCcchHHHHHHH
Q 007121 44 NCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAVDNPAPSNYLLISGDRDFSNALHQL 123 (617)
Q Consensus 44 G~da~~Va~nIr~ALrklGY~GPVSIrAYGDls~ip~~Vl~aLsSSGIsLiHVPalDNPpPANIMLISGDrDFS~aLs~L 123 (617)
.+++++|...|..+-+ |.+.|-+..|.+...--+. ...|. |+.+ .+..+....|....|.+|
T Consensus 77 ~~s~~Dil~al~~a~~---~~~kIavvg~~~~~~~~~~-~~~ll--~~~i------------~~~~~~~~~e~~~~i~~l 138 (196)
T 2q5c_A 77 KVTRFDTMRAVYNAKR---FGNELALIAYKHSIVDKHE-IEAML--GVKI------------KEFLFSSEDEITTLISKV 138 (196)
T ss_dssp CCCHHHHHHHHHHHGG---GCSEEEEEEESSCSSCHHH-HHHHH--TCEE------------EEEEECSGGGHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHh---hCCcEEEEeCcchhhHHHH-HHHHh--CCce------------EEEEeCCHHHHHHHHHHH
Confidence 4678899988888754 6677888888876553222 23333 3332 244455556788888899
Q ss_pred hcCCCeEEEe
Q 007121 124 RMRRYNILLA 133 (617)
Q Consensus 124 R~RGYNILLA 133 (617)
+..|+.+++=
T Consensus 139 ~~~G~~vvVG 148 (196)
T 2q5c_A 139 KTENIKIVVS 148 (196)
T ss_dssp HHTTCCEEEE
T ss_pred HHCCCeEEEC
Confidence 8888888765
No 22
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=23.32 E-value=4.1e+02 Score=24.38 Aligned_cols=88 Identities=11% Similarity=0.253 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHhcCcccceEEEEEecCCC-CchHHHHHhhhcCceeeeccC-----------C-CCCCCceEEEEeCC-c
Q 007121 49 TIAQNISSALVKMNYCGPVSISAYGDTNR-IPASVQHALSSTGIALNHVPA-----------V-DNPAPSNYLLISGD-R 114 (617)
Q Consensus 49 ~Va~nIr~ALrklGY~GPVSIrAYGDls~-ip~~Vl~aLsSSGIsLiHVPa-----------l-DNPpPANIMLISGD-r 114 (617)
.|...|.+.+.+.|. -.+-.|.|... -.++.++++...||.+..+-. | ..|.-+.+++++.| +
T Consensus 13 eilkeivreikrqgv---rvvllysdqdekrrrerleefekqgvdvrtvedkedfrenireiwerypqldvvvivttddk 89 (162)
T 2l82_A 13 EILKEIVREIKRQGV---RVVLLYSDQDEKRRRERLEEFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVVVIVTTDDK 89 (162)
T ss_dssp HHHHHHHHHHHHTTC---EEEEEECCSCHHHHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEEEEEECCCH
T ss_pred HHHHHHHHHHHhCCe---EEEEEecCchHHHHHHHHHHHHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEEEEEecCcH
Confidence 356666666666544 35667877543 224567889999999988876 3 35766777777655 4
Q ss_pred chH-HHHHHHhcCCCeEEEeccCCCC
Q 007121 115 DFS-NALHQLRMRRYNILLAQPHKAS 139 (617)
Q Consensus 115 DFS-~aLs~LR~RGYNILLAqP~~aS 139 (617)
++. ..+..-++||..|++++..+..
T Consensus 90 ewikdfieeakergvevfvvynnkdd 115 (162)
T 2l82_A 90 EWIKDFIEEAKERGVEVFVVYNNKDD 115 (162)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSCH
T ss_pred HHHHHHHHHHHhcCcEEEEEecCCCc
Confidence 543 4567788999999999976643
No 23
>2ek0_A Stage V sporulation protein S (spovs) related Pro; structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} PDB: 2eh1_A
Probab=23.00 E-value=36 Score=29.79 Aligned_cols=60 Identities=23% Similarity=0.377 Sum_probs=45.9
Q ss_pred ccCCCCCCCCChhhHHHHHHHHHHhcCcccceEEEEEec--CCCCchH---HHHHhhhcCceeeeccC
Q 007121 36 IENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGD--TNRIPAS---VQHALSSTGIALNHVPA 98 (617)
Q Consensus 36 IENCPVP~G~da~~Va~nIr~ALrklGY~GPVSIrAYGD--ls~ip~~---Vl~aLsSSGIsLiHVPa 98 (617)
+|-+.|-+.-+|..|+..|-..|++ .|.+.|.|.|- +++--+. .+..|...|+.|+-+|+
T Consensus 1 me~LKVSs~S~P~~VAGAIA~~lRe---~~~veiqAIGa~AvNqAVKAIAIARg~l~~~g~Dl~~~Pa 65 (90)
T 2ek0_A 1 METLRVSSKSRPNSVAGAIAAMLRT---KGEVEVQAIGPQAVNQAVKAIAIARGYIAPDNLDLVVKPA 65 (90)
T ss_dssp CCEEEECTTCCHHHHHHHHHHHHHH---HSEEEEEECSHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred CceEEEcCCCChHHHHHHHHHHHhc---CCceEEEEECHHHHHHHHHHHHHHHHhhcccCceEEEeee
Confidence 4556777788899999999999998 67899999986 3331111 24567789999999997
No 24
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=22.92 E-value=1.4e+02 Score=26.73 Aligned_cols=50 Identities=10% Similarity=0.036 Sum_probs=35.7
Q ss_pred CCCceEEEEeCCc---chHHHHHHHhcCCCeEEEeccCCCChhHHhh---ccceEee
Q 007121 102 PAPSNYLLISGDR---DFSNALHQLRMRRYNILLAQPHKASAPLVAA---AKSVWLW 152 (617)
Q Consensus 102 PpPANIMLISGDr---DFS~aLs~LR~RGYNILLAqP~~aS~~L~aa---A~~vWlW 152 (617)
.+-+-+++||... +...++..++++|-.|+++..... .+|... |+.++.-
T Consensus 112 ~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~-s~La~~~~~ad~~l~~ 167 (199)
T 1x92_A 112 QPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDG-GGMASLLLPEDVEIRV 167 (199)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTC-HHHHHHCCTTCEEEEC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCC-CcHHhccccCCEEEEe
Confidence 3456678888653 667788888999999999876444 467777 7766543
No 25
>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans}
Probab=22.62 E-value=2.1e+02 Score=27.41 Aligned_cols=40 Identities=25% Similarity=0.207 Sum_probs=31.1
Q ss_pred HHHHhcCcccceEEEEEecCCCCchHHHHHhhhcCceeeeccC
Q 007121 56 SALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPA 98 (617)
Q Consensus 56 ~ALrklGY~GPVSIrAYGDls~ip~~Vl~aLsSSGIsLiHVPa 98 (617)
..|.++||.-. .+.||+..++.+.++.+.+.|+.+++.|.
T Consensus 30 ~~l~~~g~~Pd---~ivGDfDSi~~~~~~~~~~~~~~i~~~~~ 69 (218)
T 3ihk_A 30 SFLLKNQLPLD---LAIGDFDSVSAEEFKQIKAKAKKLVMAPA 69 (218)
T ss_dssp HHHHHTTCCCS---EEEECCTTSCHHHHHHHHTTCSSEEECCS
T ss_pred HHHHHcCCCCC---EEEeCcccCCHHHHHHHHhcCCeEEECCC
Confidence 44556777544 47799999999999999999998877664
No 26
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=22.26 E-value=4.2e+02 Score=24.37 Aligned_cols=121 Identities=14% Similarity=0.137 Sum_probs=70.1
Q ss_pred ccccCCCCCccchhhhhhcCCceEEEEecc--------------------CC-----CCCCCCC-------hhhHHHHHH
Q 007121 8 TVTASVSAPMASTAERQYVTAKTSVWWDIE--------------------NC-----QVPKNCD-------PHTIAQNIS 55 (617)
Q Consensus 8 ~~~~~~~~~~t~~ae~rya~AkTsVFWDIE--------------------NC-----PVP~G~d-------a~~Va~nIr 55 (617)
|+|-|++..-|-++......+.+-++.|-. ++ ..|-+-+ -..+...|.
T Consensus 9 G~GpG~~~~lT~~A~~~L~~advv~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 88 (232)
T 2qbu_A 9 GVGPGDSELLTLRAVNVLRSVPVICAPRSSSERESIALSIVEDILTERRDGCRILDPVFPMTDDRDELESHWDSAARMVA 88 (232)
T ss_dssp ECBSSCGGGSBHHHHHHHHHCSEEECCBCTTCSSCHHHHHHHHHHHHCSSCCEEECCBCCSCSSSTTHHHHHHHHHHHHH
T ss_pred EcCCCChHHHHHHHHHHHHhCCEEEEeCCCCCccchHHHHHHHHhccccCCcEEEEecCCCCccHHHHHHHHHHHHHHHH
Confidence 445556667788888888888777765431 11 1111111 123445555
Q ss_pred HHHHhcCcccceEEEEEecCCC--CchHHHHHhhhcCceeeeccC----------CCCCC---CceEEEEeCCcchHHHH
Q 007121 56 SALVKMNYCGPVSISAYGDTNR--IPASVQHALSSTGIALNHVPA----------VDNPA---PSNYLLISGDRDFSNAL 120 (617)
Q Consensus 56 ~ALrklGY~GPVSIrAYGDls~--ip~~Vl~aLsSSGIsLiHVPa----------lDNPp---PANIMLISGDrDFS~aL 120 (617)
..+++ | ..|.+-+.||-.- .-..+.+.|...||.+.-+|. +.-|. -..|.++++..+ .|
T Consensus 89 ~~~~~-g--~~V~~l~~GDP~i~~~~~~l~~~~~~~gi~v~viPGiSs~~aa~a~~g~pl~~~~~~~~~~~~~~~---~l 162 (232)
T 2qbu_A 89 AELED-G--RDVAFITLGDPSIYSTFSYLQQRIEDMGFKTEMVPGVTSFTACAATAGRTLVEGDEILLVVPRVDD---RF 162 (232)
T ss_dssp HHHHT-T--CCEEEEESBCTTBSCSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHTTCCCBCTTCCEEEESSCCH---HH
T ss_pred HHHHC-C--CeEEEEeCCCCccchhHHHHHHHHHHCCCcEEEeCCccHHHHHHHHhCCCCCCCCceEEEEeCCHH---HH
Confidence 55543 2 2577777799553 334567889999999998987 12221 256888888654 34
Q ss_pred HHHhcCCCeEEEec
Q 007121 121 HQLRMRRYNILLAQ 134 (617)
Q Consensus 121 s~LR~RGYNILLAq 134 (617)
..+-..+..+++..
T Consensus 163 ~~~~~~~~t~vl~~ 176 (232)
T 2qbu_A 163 ERVLRDVDACVIMK 176 (232)
T ss_dssp HHHGGGCSEEEESS
T ss_pred HHHhhcCCeEEEEc
Confidence 44433445665543
No 27
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}
Probab=22.15 E-value=3.4e+02 Score=26.95 Aligned_cols=99 Identities=17% Similarity=0.085 Sum_probs=61.5
Q ss_pred HHHHHHHHhcC--cccceEEEEEecCCCCchHHHHHhhhc--CceeeeccC----CC----CCCCceEEEEeCC---cch
Q 007121 52 QNISSALVKMN--YCGPVSISAYGDTNRIPASVQHALSST--GIALNHVPA----VD----NPAPSNYLLISGD---RDF 116 (617)
Q Consensus 52 ~nIr~ALrklG--Y~GPVSIrAYGDls~ip~~Vl~aLsSS--GIsLiHVPa----lD----NPpPANIMLISGD---rDF 116 (617)
..|+++.+.+- -...|-|.+.|.-...-......|... |+....++. .. -.+.+-+++||-. .|-
T Consensus 11 ~~i~~~v~~i~~~~~~~I~i~G~GtS~~aa~~~~~~l~~~~~g~~~~~~~~~e~~~~~~~~l~~~dlvI~iS~SG~T~e~ 90 (329)
T 3eua_A 11 REVQAFLQDLKGKTIDHVFFVACGGSSAIMYPSKYVFDRESKSINSDLYSANEFIQRNPVQLGEKSLVILCSHSGNTPET 90 (329)
T ss_dssp HHHHHHHHHHTTCCCCEEEEEECTHHHHTTHHHHHHHHHHCSSCEEEEEEHHHHHHHCCTTCSTTEEEEEEESSSCCHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEEEccHHHHHHHHHHHHHHHhcCCCeEEEEccHHHHhcCccCCCCCcEEEEEcCCCCCHHH
Confidence 34444444432 124567777777555555566666654 887665543 11 1244567777754 367
Q ss_pred HHHHHHHhcCCCeEEEeccCCCChhHHhhccceEe
Q 007121 117 SNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWL 151 (617)
Q Consensus 117 S~aLs~LR~RGYNILLAqP~~aS~~L~aaA~~vWl 151 (617)
..++...+++|-.|+.+.....| +|...|+.++.
T Consensus 91 l~a~~~ak~~Ga~~iaIT~~~~S-~La~~ad~~l~ 124 (329)
T 3eua_A 91 VKAAAFARGKGALTIAMTFKPES-PLAQEAQYVAQ 124 (329)
T ss_dssp HHHHHHHHHTTCEEEEEESCTTS-HHHHHSSEEEE
T ss_pred HHHHHHHHHCCCCEEEEECCCCC-hHHHhCCEEEE
Confidence 77888888999999998865444 57777775554
No 28
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=21.93 E-value=1.8e+02 Score=26.62 Aligned_cols=16 Identities=31% Similarity=0.382 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHhcCc
Q 007121 48 HTIAQNISSALVKMNY 63 (617)
Q Consensus 48 ~~Va~nIr~ALrklGY 63 (617)
..+...|++++++.||
T Consensus 23 ~~~~~gi~~~~~~~g~ 38 (276)
T 3jy6_A 23 TELFKGISSILESRGY 38 (276)
T ss_dssp HHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHCCC
Confidence 4677788888888877
No 29
>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.10A {Geobacillus thermodenitrificans}
Probab=21.71 E-value=1.2e+02 Score=29.44 Aligned_cols=76 Identities=24% Similarity=0.315 Sum_probs=47.6
Q ss_pred HHhcCcccceEEEEEecCCCCchHHHHHhhhcCceeeeccC--------------CCCCCCceEEEEeC--Cc-c--hHH
Q 007121 58 LVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPA--------------VDNPAPSNYLLISG--DR-D--FSN 118 (617)
Q Consensus 58 LrklGY~GPVSIrAYGDls~ip~~Vl~aLsSSGIsLiHVPa--------------lDNPpPANIMLISG--Dr-D--FS~ 118 (617)
|.++||.-. .+.||+..++.+.++.+.+.|+.+++.|. .+. .+..|+++=+ .| | +++
T Consensus 37 l~~~g~~Pd---~ivGD~DSi~~~~~~~~~~~~~~i~~~p~eKD~TD~e~Al~~a~~~-g~~~I~i~Ga~GGR~DH~lan 112 (223)
T 3k94_A 37 LLEAGFRPV---RAFGDFDSLPAEDVVKLQQAFPDLDVWPAEKDKTDMEIALDWAVEQ-TARCIRLFGATGGRLDHLFGN 112 (223)
T ss_dssp HHHHTCCCS---EEESCGGGSCHHHHHHHHHHCTTCCEECCBTTBCHHHHHHHHHHTT-CCSEEEEESCSSSSHHHHHHH
T ss_pred HHHcCCCCC---EEEeCcccCCHHHHHHHHhcCCeEEECCCcCCCCHHHHHHHHHHHc-CCCEEEEEcCCCCchhHHHHH
Confidence 444577543 46799999999999999999999998884 222 3344444432 22 2 344
Q ss_pred HHHHHhcCCCeEEEeccCC
Q 007121 119 ALHQLRMRRYNILLAQPHK 137 (617)
Q Consensus 119 aLs~LR~RGYNILLAqP~~ 137 (617)
+-..++.++.+|.|+...+
T Consensus 113 i~lL~~~~~~~i~lid~~~ 131 (223)
T 3k94_A 113 VELLLKYADRPIEIVDRQN 131 (223)
T ss_dssp HHHHHHTTTSCEEEEETTE
T ss_pred HHHHHhccCCeEEEEcCCe
Confidence 3223334667777776544
No 30
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium}
Probab=20.08 E-value=2.8e+02 Score=27.68 Aligned_cols=87 Identities=10% Similarity=0.046 Sum_probs=52.7
Q ss_pred cceEEEEEecCCCCchHHHHHhhh-cCceeeeccC-------CCC-CCCceEEEEeCCc---chHHHHHHHhcCCCeEEE
Q 007121 65 GPVSISAYGDTNRIPASVQHALSS-TGIALNHVPA-------VDN-PAPSNYLLISGDR---DFSNALHQLRMRRYNILL 132 (617)
Q Consensus 65 GPVSIrAYGDls~ip~~Vl~aLsS-SGIsLiHVPa-------lDN-PpPANIMLISGDr---DFS~aLs~LR~RGYNILL 132 (617)
..|-|.+.|.-...-......|.. .|+....... ... .+.+-+++||-.. |...++...+++|-.|+.
T Consensus 55 ~~I~i~G~G~S~~~a~~~~~~l~~~~g~~~~~~~~~e~~~~~~~~l~~~dlvI~iS~SG~t~e~~~a~~~ak~~Ga~vi~ 134 (355)
T 2a3n_A 55 SSLFFASVGGSLAPMMAINEFAKELTTLPVYVEQAAELIHKGNKRLNKDSVVITLSKSGDTKESVAIAEWCKAQGIRVVA 134 (355)
T ss_dssp SCEEEEECGGGHHHHHHHHHHHHHHCCSCEEEEEHHHHHHHCCTTCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEE
T ss_pred CEEEEEEccHHHHHHHHHHHHHHhhcCCeEEEcCcHHHHhhchhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 456677776543332233444555 6775543322 112 3556778888543 677788888889988988
Q ss_pred eccCCCChhHHhhccceEee
Q 007121 133 AQPHKASAPLVAAAKSVWLW 152 (617)
Q Consensus 133 AqP~~aS~~L~aaA~~vWlW 152 (617)
+..... .+|...|+.++.-
T Consensus 135 IT~~~~-S~La~~ad~~l~~ 153 (355)
T 2a3n_A 135 ITKNAD-SPLAQAATWHIPM 153 (355)
T ss_dssp EESCTT-SHHHHTCSEEEEC
T ss_pred EECCCC-ChhhHhCCEEEEe
Confidence 876544 3677777765543
Done!