BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007122
(617 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 242 bits (618), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 119/190 (62%), Positives = 144/190 (75%)
Query: 428 VDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKS 487
+DM++MF LL+E+ +++D A PL + G I+F+NVHFSY R+ L VSF V G++
Sbjct: 23 IDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQT 82
Query: 488 VAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND 547
+A+VG SG+GKSTILRLLFR +D SG IRIDGQDI +VT SLR IGVVPQDTVLFND
Sbjct: 83 LALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND 142
Query: 548 TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALA 607
TI NIRYGR++A +EV AA+ A IHD IM FP Y T VGERGLKLSGGEKQRVA+A
Sbjct: 143 TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIA 202
Query: 608 RAFLKAPPIL 617
R LKAP I+
Sbjct: 203 RTILKAPGII 212
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 206 bits (525), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 140/419 (33%), Positives = 219/419 (52%), Gaps = 20/419 (4%)
Query: 209 RTIRSVSRKVFSHLHELDLRYHLSRETG-ALNRIIDRGSRAINFILSSMV---FNVVPTI 264
+ + + +K+++HL L R++ + + G ++R+I+ + +FIL+ ++ + + I
Sbjct: 91 KILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITII 150
Query: 265 LEISM-----VSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDAS 319
+ +S+ V LA F PF +T YV F + R K + ++A +
Sbjct: 151 IALSIMFFLDVKLTLAALFIFPFYILT-----VYVFFG----RLR-KLTRERSQALAEVQ 200
Query: 320 TRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALS 379
+ + VK F E EA+ +D+ + ALK R A+ N +
Sbjct: 201 GFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPI 260
Query: 380 TAMVLCSHGILSGEMTVGDLVMVXXXXXXXXXXXXXXXSVYRETVQSLVDMKSMFQLLEE 439
+ + ++ +SG +TVG L + + QS M +FQL++E
Sbjct: 261 IVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDE 320
Query: 440 KADIQDRDNAMPLNLKGGSIQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGK 498
DI++ A P+ +K G I D+V F Y E IL ++ + G++VA VG SG GK
Sbjct: 321 DYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGK 380
Query: 499 STILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL 558
ST++ L+ R +D SG I IDG +I + SLR IG+V QD +LF+DT+ NI GR
Sbjct: 381 STLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP 440
Query: 559 SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
+AT+EEV +AA+ A HD IMN P Y T VGERG+KLSGG+KQR+++AR FL PPIL
Sbjct: 441 TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPIL 499
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 168 bits (426), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 155/507 (30%), Positives = 227/507 (44%), Gaps = 32/507 (6%)
Query: 124 RLRVITALGFLVAAKVLNVQVPFLFKXXXXXXXXXXXXXXXXXXXXXXXXXFGTPAAVLI 183
R R+ A+GFL + V+++ PF G A L
Sbjct: 49 RRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLC---LGLSAVFLC 105
Query: 184 GYGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIID 243
G +A N +R + R + + +FS + ++ + TG L I+
Sbjct: 106 G--------AAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGEL---IN 154
Query: 244 RGSRAINFILSSMVFNVVPTILEISMVS-GILAYKFGAPFAWITSLSVVAYV-VFTLSVT 301
R S + S+ N+ + + S GI F +P LSVV V + +
Sbjct: 155 RLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYG 214
Query: 302 QWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQR 361
++ K K + A+ A + + N TV+ F E E E+Y + D ++ R
Sbjct: 215 RYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKV----DHVMQLAR 270
Query: 362 SLAFLNFG--QNVIFSAALSTAMVLCSHGILSG--EMTVGDLVMVXXXXXXXXXXXXXXX 417
AF G S L VL G+L G MTVG+L
Sbjct: 271 KEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLS 330
Query: 418 SVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKG--GSIQFDNVHFSYLT--ERK 473
S Y E ++ L +++LLE + + + + LN K G+++F NVHF+Y E
Sbjct: 331 SFYSELMKGLGAGGRLWELLEREPKLPFNEGVI-LNEKSFQGALEFKNVHFAYPARPEVP 389
Query: 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533
I S +P+G A+VG SGSGKST+L LL R +D SG+I +DG DI ++ LR
Sbjct: 390 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 449
Query: 534 SIGVVPQDTVLFNDTIFHNIRYG---RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG 590
IG V Q+ +LF+ +I NI YG S T EE+ A A I NFP ++TVVG
Sbjct: 450 KIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVG 509
Query: 591 ERGLKLSGGEKQRVALARAFLKAPPIL 617
E+G+ LSGG+KQR+A+ARA LK P IL
Sbjct: 510 EKGVLLSGGQKQRIAIARALLKNPKIL 536
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 155/507 (30%), Positives = 227/507 (44%), Gaps = 32/507 (6%)
Query: 124 RLRVITALGFLVAAKVLNVQVPFLFKXXXXXXXXXXXXXXXXXXXXXXXXXFGTPAAVLI 183
R R+ A+GFL + V+++ PF G A L
Sbjct: 18 RRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLC---LGLSAVFLC 74
Query: 184 GYGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIID 243
G +A N +R + R + + +FS + ++ + TG L I+
Sbjct: 75 G--------AAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGEL---IN 123
Query: 244 RGSRAINFILSSMVFNVVPTILEISMVS-GILAYKFGAPFAWITSLSVVAYV-VFTLSVT 301
R S + S+ N+ + + S GI F +P LSVV V + +
Sbjct: 124 RLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYG 183
Query: 302 QWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQR 361
++ K K + A+ A + + N TV+ F E E E+Y + D ++ R
Sbjct: 184 RYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKV----DHVMQLAR 239
Query: 362 SLAFLNFG--QNVIFSAALSTAMVLCSHGILSG--EMTVGDLVMVXXXXXXXXXXXXXXX 417
AF G S L VL G+L G MTVG+L
Sbjct: 240 KEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLS 299
Query: 418 SVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKG--GSIQFDNVHFSYLT--ERK 473
S Y E ++ L +++LLE + + + + LN K G+++F NVHF+Y E
Sbjct: 300 SFYSELMKGLGAGGRLWELLEREPKLPFNEGVI-LNEKSFQGALEFKNVHFAYPARPEVP 358
Query: 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533
I S +P+G A+VG SGSGKST+L LL R +D SG+I +DG DI ++ LR
Sbjct: 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 418
Query: 534 SIGVVPQDTVLFNDTIFHNIRYGR---LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG 590
IG V Q+ +LF+ +I NI YG S T EE+ A A I NFP ++TVVG
Sbjct: 419 KIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVG 478
Query: 591 ERGLKLSGGEKQRVALARAFLKAPPIL 617
E+G+ LSGG+KQR+A+ARA LK P IL
Sbjct: 479 EKGVLLSGGQKQRIAIARALLKNPKIL 505
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 108/327 (33%), Positives = 171/327 (52%), Gaps = 19/327 (5%)
Query: 303 WRTK-----FRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQY---DEFLRRYED 354
W TK FRK D + + ++L+ V+ F E +E E + +E LRR
Sbjct: 182 WLTKKGNPLFRKIQESTD-EVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSII 240
Query: 355 AALKTQRSLAFLNFGQNV-IFSAALSTAMVLCSHGIL--SGEMTVGDLVMVXXXXXXXXX 411
+A + + F + IF + VL G+L + +M +G ++
Sbjct: 241 SAF------SLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMF 294
Query: 412 XXXXXXSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTE 471
++ V++ K + ++L EK I++ DNA+ L GS+ F+NV F Y
Sbjct: 295 SLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFEN 354
Query: 472 R-KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES 530
+L GV+F V G VA++G +GSGKST++ L+ R D G + +D D+ V L+
Sbjct: 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKD 414
Query: 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG 590
LR I VPQ+TVLF+ TI N+++GR AT++E+ +AA+ A IHD I++ P Y + V
Sbjct: 415 LRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVE 474
Query: 591 ERGLKLSGGEKQRVALARAFLKAPPIL 617
G SGG+KQR+++ARA +K P +L
Sbjct: 475 RGGRNFSGGQKQRLSIARALVKKPKVL 501
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 117/164 (71%), Gaps = 3/164 (1%)
Query: 456 GGSIQFDNVHFSY--LTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS 513
G +I+F +V+FSY T + L ++F +P+G + A+VG +GSGKSTI +LL+R +D
Sbjct: 15 GVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE- 73
Query: 514 GSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAA 573
G I+I G+++ + S+R IG+VPQDT+LFN+TI +NI YG+L AT+EEV A + A
Sbjct: 74 GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQ 133
Query: 574 IHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
++D I P K+ T+VG +G+KLSGGE+QR+A+AR LK P I+
Sbjct: 134 LYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIV 177
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 129/421 (30%), Positives = 202/421 (47%), Gaps = 11/421 (2%)
Query: 202 VFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVV 261
S V+ + + R++F+H + +R+ TG L I S + S + ++V
Sbjct: 88 CLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIV 147
Query: 262 PTILEISMVSGILAYKFGAPFAWITSLSVVAYVV-FTLSVTQWR-TKFRKAMNKADNDAS 319
E + + G+L F + L VVA VV F +S R K + M A +
Sbjct: 148 R---EGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVT 204
Query: 320 TRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALS 379
+ A L ++ V + + E +++D+ +K + + + +I S AL
Sbjct: 205 SSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALF 264
Query: 380 TAMVLCSHGILSGEMTVGDLVMVXXXXXXXXXXXXXXXSVYRETVQSLVDMKSMFQLLEE 439
+ L S + E+T G +V SV E + + +++F L++
Sbjct: 265 AVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDL 324
Query: 440 KADIQDRDNA-MPLNLKGGSIQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSG 497
+ + RDN G + +V F+Y E+ L VSF +P GK+VA+VG SGSG
Sbjct: 325 ETE---RDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSG 381
Query: 498 KSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGR 557
KSTI L R +D SGSI +DG D+ + L +LR+ +V Q+ LFNDTI +NI Y
Sbjct: 382 KSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAA 441
Query: 558 LSA-TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPI 616
T E++ AAR+A + I N P TV+GE G LSGG++QRVA+ARA L+ P+
Sbjct: 442 EGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPV 501
Query: 617 L 617
L
Sbjct: 502 L 502
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 165 bits (418), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 127/432 (29%), Positives = 208/432 (48%), Gaps = 22/432 (5%)
Query: 198 LRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALN-RIIDRGSRAINFILS-- 254
++ + + A R I + +K F + ++ + + G LN R+ D S+ IN +
Sbjct: 127 IQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSK-INEGIGDK 185
Query: 255 -SMVFNVVPTILEISMVSGILAYKFGAPFAWITSLSVVAYV-VFTLSVTQWRTKFRKAMN 312
M F + T + G W +L ++A V LS W +
Sbjct: 186 IGMFFQAMATFFG--------GFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTD 237
Query: 313 K---ADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFG 369
K A A A + L TV F + E E+Y+ L + +K +
Sbjct: 238 KELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGA 297
Query: 370 QNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVXXXXXXXXXXXXXXXSVYRETVQSLVD 429
++ A+ + A + ++S E ++G ++ V +
Sbjct: 298 AFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGA 357
Query: 430 MKSMFQLLEEKADIQD--RDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAG 485
+F++++ K I + P N++G +++F N+HFSY + E +IL G++ V +G
Sbjct: 358 AYEVFKIIDNKPSIDSFSKSGHKPDNIQG-NLEFKNIHFSYPSRKEVQILKGLNLKVKSG 416
Query: 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF 545
++VA+VG SG GKST ++L+ R +D G + IDGQDI + + LR+ IGVV Q+ VLF
Sbjct: 417 QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLF 476
Query: 546 NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605
TI NIRYGR T +E+ A + A +D IM P ++ T+VGERG +LSGG+KQR+A
Sbjct: 477 ATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIA 536
Query: 606 LARAFLKAPPIL 617
+ARA ++ P IL
Sbjct: 537 IARALVRNPKIL 548
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 128/198 (64%), Gaps = 5/198 (2%)
Query: 425 QSLVDMKSMFQLLEEKADIQD-RDNAMPLNLKGGSIQFDNVHFSYLTERKI--LDGVSFV 481
++ V + +++E+ +I + N+ G++QF V F+Y T I L G+S
Sbjct: 996 KATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLE 1055
Query: 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQD 541
V G+++A+VG+SG GKST+++LL R +D +GS+ +DG++I ++ ++ LR +G+V Q+
Sbjct: 1056 VKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQE 1115
Query: 542 TVLFNDTIFHNIRYGRLS--ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGG 599
+LF+ +I NI YG S + EE+ AA+ A IH I + P KY+T VG++G +LSGG
Sbjct: 1116 PILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGG 1175
Query: 600 EKQRVALARAFLKAPPIL 617
+KQR+A+ARA ++ P IL
Sbjct: 1176 QKQRIAIARALVRQPHIL 1193
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 165 bits (418), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 127/432 (29%), Positives = 208/432 (48%), Gaps = 22/432 (5%)
Query: 198 LRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALN-RIIDRGSRAINFILS-- 254
++ + + A R I + +K F + ++ + + G LN R+ D S+ IN +
Sbjct: 127 IQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSK-INEGIGDK 185
Query: 255 -SMVFNVVPTILEISMVSGILAYKFGAPFAWITSLSVVAYV-VFTLSVTQWRTKFRKAMN 312
M F + T + G W +L ++A V LS W +
Sbjct: 186 IGMFFQAMATFFG--------GFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTD 237
Query: 313 K---ADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFG 369
K A A A + L TV F + E E+Y+ L + +K +
Sbjct: 238 KELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGA 297
Query: 370 QNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVXXXXXXXXXXXXXXXSVYRETVQSLVD 429
++ A+ + A + ++S E ++G ++ V +
Sbjct: 298 AFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGA 357
Query: 430 MKSMFQLLEEKADIQD--RDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAG 485
+F++++ K I + P N++G +++F N+HFSY + E +IL G++ V +G
Sbjct: 358 AYEVFKIIDNKPSIDSFSKSGHKPDNIQG-NLEFKNIHFSYPSRKEVQILKGLNLKVKSG 416
Query: 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF 545
++VA+VG SG GKST ++L+ R +D G + IDGQDI + + LR+ IGVV Q+ VLF
Sbjct: 417 QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLF 476
Query: 546 NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605
TI NIRYGR T +E+ A + A +D IM P ++ T+VGERG +LSGG+KQR+A
Sbjct: 477 ATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIA 536
Query: 606 LARAFLKAPPIL 617
+ARA ++ P IL
Sbjct: 537 IARALVRNPKIL 548
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 128/198 (64%), Gaps = 5/198 (2%)
Query: 425 QSLVDMKSMFQLLEEKADIQD-RDNAMPLNLKGGSIQFDNVHFSYLTERKI--LDGVSFV 481
++ V + +++E+ +I + N+ G++QF V F+Y T I L G+S
Sbjct: 996 KATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLE 1055
Query: 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQD 541
V G+++A+VG+SG GKST+++LL R +D +GS+ +DG++I ++ ++ LR +G+V Q+
Sbjct: 1056 VKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQE 1115
Query: 542 TVLFNDTIFHNIRYGRLS--ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGG 599
+LF+ +I NI YG S + EE+ AA+ A IH I + P KY+T VG++G +LSGG
Sbjct: 1116 PILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGG 1175
Query: 600 EKQRVALARAFLKAPPIL 617
+KQR+A+ARA ++ P IL
Sbjct: 1176 QKQRIAIARALVRQPHIL 1193
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 123/444 (27%), Positives = 218/444 (49%), Gaps = 18/444 (4%)
Query: 181 VLIGYGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNR 240
V+IG I R S + + S V+ + + ++ R++F H+ + + + + TG L
Sbjct: 70 VVIGLMILRGITSYIS---SYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLS 126
Query: 241 IIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWITSLSVVAYV-VFTLS 299
I S + SS ++ + E + + G+ F ++W S+ +V + +++
Sbjct: 127 RITYDSEQVA---SSSSGALITVVREGASIIGLFIMMF--YYSWQLSIILVVLAPIVSIA 181
Query: 300 VTQWRTKFR---KAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAA 356
+ +FR K M +T A L ++ V F + E +++D+ +
Sbjct: 182 IRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQG 241
Query: 357 LKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVXXXXXXXXXXXXXX 416
+K + + + +I S AL+ + S + +T G + +V
Sbjct: 242 MKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSL 301
Query: 417 XSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAM-PLNLKGGSIQFDNVHFSYLT-ERKI 474
+V + + + +++F +L+ + Q++D ++ G ++F NV F+Y E
Sbjct: 302 TNVNAQFQRGMAACQTLFAILDSE---QEKDEGKRVIDRATGDLEFRNVTFTYPGREVPA 358
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534
L ++ +PAGK+VA+VG SGSGKSTI L+ R +D G I +DG D+ E TL SLR
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 418
Query: 535 IGVVPQDTVLFNDTIFHNIRYGRLSA-TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593
+ +V Q+ LFNDT+ +NI Y R + E++ +AAR A D I T++GE G
Sbjct: 419 VALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENG 478
Query: 594 LKLSGGEKQRVALARAFLKAPPIL 617
+ LSGG++QR+A+ARA L+ PIL
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPIL 502
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 123/444 (27%), Positives = 218/444 (49%), Gaps = 18/444 (4%)
Query: 181 VLIGYGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNR 240
V+IG I R S + + S V+ + + ++ R++F H+ + + + + TG L
Sbjct: 70 VVIGLMILRGITSYVS---SYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLS 126
Query: 241 IIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWITSLSVVAYV-VFTLS 299
I S + SS ++ + E + + G+ F ++W S+ ++ + +++
Sbjct: 127 RITYDSEQVA---SSSSGALITVVREGASIIGLFIMMF--YYSWQLSIILIVLAPIVSIA 181
Query: 300 VTQWRTKFR---KAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAA 356
+ +FR K M +T A L ++ V F + E +++D+ R
Sbjct: 182 IRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQG 241
Query: 357 LKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVXXXXXXXXXXXXXX 416
+K + + + +I S AL+ + S + +T G + +V
Sbjct: 242 MKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSL 301
Query: 417 XSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKG-GSIQFDNVHFSYLT-ERKI 474
+V + + + +++F +L+ + Q++D + + G ++F NV F+Y +
Sbjct: 302 TNVNAQFQRGMAACQTLFTILDSE---QEKDEGKRVIERATGDVEFRNVTFTYPGRDVPA 358
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534
L ++ +PAGK+VA+VG SGSGKSTI L+ R +D G I +DG D+ E TL SLR
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQ 418
Query: 535 IGVVPQDTVLFNDTIFHNIRYGRLSA-TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593
+ +V Q+ LFNDT+ +NI Y R + E++ +AAR A D I TV+GE G
Sbjct: 419 VALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENG 478
Query: 594 LKLSGGEKQRVALARAFLKAPPIL 617
+ LSGG++QR+A+ARA L+ PIL
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPIL 502
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 151 bits (382), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 82/188 (43%), Positives = 119/188 (63%), Gaps = 3/188 (1%)
Query: 433 MFQLLEEKADIQDRDNAMPLNLK-GGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVA 489
++++L+ K I A ++K G I +NVHF+Y + + IL G++ V AG++VA
Sbjct: 389 IYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVA 448
Query: 490 IVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTI 549
+VG+SG GKSTI+ LL R +D G I IDG D+ ++ LE LRK++ VV Q+ LFN TI
Sbjct: 449 LVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTI 508
Query: 550 FHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609
NI G+ T EE+ A + A I P Y+T+VG+RG +LSGG+KQR+A+ARA
Sbjct: 509 EENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARA 568
Query: 610 FLKAPPIL 617
++ P IL
Sbjct: 569 LVRNPKIL 576
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 120/375 (32%), Positives = 188/375 (50%), Gaps = 24/375 (6%)
Query: 258 FNVVPTILEISMVSGI-LAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKAD- 315
F+ V T L +SMV+GI LA+ +G A + ++++ V F + R + + ++
Sbjct: 874 FSTVITTL-VSMVAGIGLAFFYGWQMALLI-IAILPIVAFGQYLRGRRFTGKNVKSASEF 931
Query: 316 NDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFS 375
D+ AI+++ N TV+ E E + E L A+K AF+ Q + +
Sbjct: 932 ADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKE----AFI---QGLSYG 984
Query: 376 AALSTAMVL--CSHG-----ILSGEMTVGDL--VMVXXXXXXXXXXXXXXXSVYRETVQS 426
A S +L C++ I++ T+ + + V S + E ++
Sbjct: 985 CASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKA 1044
Query: 427 LVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYL--TERKILDGVSFVVPA 484
+F +L + + I A G + F NV F+Y E +IL G+SF V
Sbjct: 1045 TFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEP 1104
Query: 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVL 544
G+++A+VG SG GKST++ LL R +DT G I IDG +I + E R I +V Q+ L
Sbjct: 1105 GQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTL 1164
Query: 545 FNDTIFHNIRYG--RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQ 602
F+ +I NI YG S T +V +AAR A IH+ I P + T VG+RG +LSGG+KQ
Sbjct: 1165 FDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQ 1224
Query: 603 RVALARAFLKAPPIL 617
R+A+ARA ++ P IL
Sbjct: 1225 RIAIARALVRNPKIL 1239
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 150/298 (50%), Gaps = 25/298 (8%)
Query: 332 VKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSH---G 388
+K F E E E++D K Q IFS L M + ++
Sbjct: 229 IKLFTREEKEMEKFDRVNESLRKVGTKAQ------------IFSGVLPPLMNMVNNLGFA 276
Query: 389 ILSG---------EMTVGDLVMVXXXXXXXXXXXXXXXSVYRETVQSLVDMKSMFQLLEE 439
++SG +TVG + + + +L + +F++L+
Sbjct: 277 LISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDL 336
Query: 440 KADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKS 499
+ + D D A+ L G I+F NV FSY ++ +L ++F + G+ VA+VG +GSGK+
Sbjct: 337 EEEKDDPD-AVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKT 395
Query: 500 TILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS 559
TI+ LL R +D G I +DG DI ++ SLR SIG+V QDT+LF+ T+ N++YG
Sbjct: 396 TIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPG 455
Query: 560 ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
AT+EE+ +AA+ I + P Y TV+ + G LS G++Q +A+ RAFL P IL
Sbjct: 456 ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKIL 513
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 94/160 (58%), Gaps = 1/160 (0%)
Query: 459 IQFDNVHFSYLTERK-ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
I F N+ F Y + ILD ++ + G+ + IVG SGSGKST+ +L+ R + +G +
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
IDG D+ LR+ +GVV QD VL N +I NI + E+V AA+ A HD
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 578 IMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
I Y+T+VGE+G LSGG++QR+A+ARA + P IL
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKIL 161
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 94/160 (58%), Gaps = 1/160 (0%)
Query: 459 IQFDNVHFSYLTERK-ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
I F N+ F Y + ILD ++ + G+ + IVG SGSGKST+ +L+ R + +G +
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
IDG D+ LR+ +GVV QD VL N +I NI + E+V AA+ A HD
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 578 IMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
I Y+T+VGE+G LSGG++QR+A+ARA + P IL
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKIL 167
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 94/160 (58%), Gaps = 1/160 (0%)
Query: 459 IQFDNVHFSYLTERK-ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
I F N+ F Y + ILD ++ + G+ + IVG SGSGKST+ +L+ R + +G +
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
IDG D+ LR+ +GVV QD VL N +I NI + E+V AA+ A HD
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 578 IMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
I Y+T+VGE+G LSGG++QR+A+ARA + P IL
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKIL 167
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 94/160 (58%), Gaps = 1/160 (0%)
Query: 459 IQFDNVHFSYLTERK-ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
I F N+ F Y + ILD ++ + G+ + IVG SGSGKST+ +L+ R + +G +
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
IDG D+ LR+ +GVV QD VL N +I NI + E+V AA+ A HD
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 578 IMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
I Y+T+VGE+G LSGG++QR+A+ARA + P IL
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKIL 161
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 94/160 (58%), Gaps = 1/160 (0%)
Query: 459 IQFDNVHFSYLTERK-ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
I F N+ F Y + ILD ++ + G+ + IVG SGSGKST+ +L+ R + +G +
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
IDG D+ LR+ +GVV QD VL N +I NI + E+V AA+ A HD
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 578 IMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
I Y+T+VGE+G LSGG++QR+A+ARA + P IL
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKIL 167
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 94/160 (58%), Gaps = 1/160 (0%)
Query: 459 IQFDNVHFSYLTERK-ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
I F N+ F Y + ILD ++ + G+ + IVG SGSGKST+ +L+ R + +G +
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 63
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
IDG D+ LR+ +GVV QD VL N +I NI + E+V AA+ A HD
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 123
Query: 578 IMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
I Y+T+VGE+G LSGG++QR+A+ARA + P IL
Sbjct: 124 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKIL 163
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 94/160 (58%), Gaps = 1/160 (0%)
Query: 459 IQFDNVHFSYLTERK-ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
I F N+ F Y + ILD ++ + G+ + IVG +GSGKST+ +L+ R + +G +
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVL 63
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
IDG D+ LR+ +GVV QD VL N +I NI + E+V AA+ A HD
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 123
Query: 578 IMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
I Y+T+VGE+G LSGG++QR+A+ARA + P IL
Sbjct: 124 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKIL 163
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 92/156 (58%), Gaps = 1/156 (0%)
Query: 463 NVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD 522
+V F+Y +IL +SF +A G SG GKSTI LL R + +G I IDGQ
Sbjct: 6 HVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQP 65
Query: 523 ICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYG-RLSATEEEVYDAARRAAIHDTIMNF 581
I ++LE+ R IG V QD+ + TI N+ YG T+E+++ A + N
Sbjct: 66 IDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENM 125
Query: 582 PAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
P + +T VGERG+K+SGG++QR+A+ARAFL+ P IL
Sbjct: 126 PDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKIL 161
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 97/170 (57%), Gaps = 4/170 (2%)
Query: 451 PLNLKGGSIQFDNVHFSYLTER--KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508
PLN+KG ++F +V F+Y ++L G++F + GK A+VG +GSGKST+ LL
Sbjct: 10 PLNMKG-LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL 68
Query: 509 FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL-SATEEEVYD 567
+ G + +DG+ + + L + V Q+ +LF + NI YG + T EE+
Sbjct: 69 YQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITA 128
Query: 568 AARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
A + HD I FP Y T VGE G +LSGG++Q VALARA ++ P +L
Sbjct: 129 VAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLL 178
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 97/170 (57%), Gaps = 4/170 (2%)
Query: 451 PLNLKGGSIQFDNVHFSYLTER--KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508
PLN+KG ++F +V F+Y ++L G++F + GK A+VG +GSGKST+ LL
Sbjct: 10 PLNMKG-LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL 68
Query: 509 FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL-SATEEEVYD 567
+ G + +DG+ + + L + V Q+ +LF + NI YG + T EE+
Sbjct: 69 YQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITA 128
Query: 568 AARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
A + HD I FP Y T VGE G +LSGG++Q VALARA ++ P +L
Sbjct: 129 VAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLL 178
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 96/170 (56%), Gaps = 4/170 (2%)
Query: 451 PLNLKGGSIQFDNVHFSYLTER--KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508
PLN+KG ++F +V F+Y ++L G++F + GK A+VG +GSGKST+ LL
Sbjct: 10 PLNMKG-LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL 68
Query: 509 FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL-SATEEEVYD 567
+ G + +DG+ + + L + V Q+ +LF + NI YG + T EE+
Sbjct: 69 YQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITA 128
Query: 568 AARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
A + HD I FP Y T VGE G +L+ G++Q VALARA ++ P +L
Sbjct: 129 VAMESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLL 178
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 95/170 (55%), Gaps = 4/170 (2%)
Query: 451 PLNLKGGSIQFDNVHFSYLTERKIL--DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508
PL+L+G +QF +V F+Y +L G++F + G+ A+VG +GSGKST+ LL
Sbjct: 8 PLHLEG-LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNL 66
Query: 509 FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYG-RLSATEEEVYD 567
+ G + +DG+ + + L + + V Q+ +F ++ NI YG T EE+
Sbjct: 67 YQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITA 126
Query: 568 AARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
AA ++ H I P Y T V E G +LSGG++Q VALARA ++ P +L
Sbjct: 127 AAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVL 176
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 91/174 (52%), Gaps = 8/174 (4%)
Query: 446 RDNAMPLNLKGGSIQFDNVHFSYLTE--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILR 503
+D+ P GG + ++ Y TE IL+ +SF + G+ V ++G +GSGKST+L
Sbjct: 10 KDDIWP---SGGQMTVKDLTAKY-TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLS 65
Query: 504 LLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEE 563
R +T G I+IDG +TLE RK+ GV+PQ +F+ T N+ + +++
Sbjct: 66 AFLRLLNTE-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD-PNAAHSDQ 123
Query: 564 EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
E++ A + I FP K V+ + G LS G KQ + LAR+ L IL
Sbjct: 124 EIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKIL 177
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 17/154 (11%)
Query: 458 SIQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI 516
SI N F++ ++ L+G++F +P G VA+VG G GKS++L L D G +
Sbjct: 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 517 RIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRA-AIH 575
I G S+ VPQ + ND++ NI +G EE Y + +A A+
Sbjct: 63 AIKG-------------SVAYVPQQAWIQNDSLRENILFG--CQLEEPYYRSVIQACALL 107
Query: 576 DTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609
+ P+ T +GE+G+ LSGG+KQRV+LARA
Sbjct: 108 PDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARA 141
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 83/158 (52%), Gaps = 20/158 (12%)
Query: 467 SYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526
Y + K +DGVSF V G+ VA++G SG GK+T L +L + SG I D D+
Sbjct: 11 KYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD--DVLVN 68
Query: 527 TLESLRKSIGVVPQDTVLFND-TIFHNI----RYGRLSATEEE--VYDAARRAAIHDTIM 579
+ + +G+V Q+ L+ T+F NI R R+S E E V + AR+ I + +
Sbjct: 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLD 128
Query: 580 NFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
P +LSGG++QRVALARA +K P +L
Sbjct: 129 RKPT-----------QLSGGQQQRVALARALVKQPKVL 155
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 86/162 (53%), Gaps = 10/162 (6%)
Query: 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
+I+F V Y + + GVSF + G+ V ++G SGSGK+TILRL+ G +
Sbjct: 14 TIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNIRYG-RLSATEEEVYDAARRAAIH 575
I G+ + + L ++++G+V Q+ LF T++ N+ +G R ++ DA R
Sbjct: 74 IGGKRVTD--LPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVR---- 127
Query: 576 DTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
++ F + + +LSGG++QRVALARA P +L
Sbjct: 128 -ELLRF-MRLESYANRFPHELSGGQQQRVALARALAPRPQVL 167
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 79/148 (53%), Gaps = 11/148 (7%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC---EVTLESL 531
L+ VS VPAG+ ++G SG+GKST++R + GS+ +DGQ++ E L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 532 RKSIGVVPQD-TVLFNDTIFHNIRYG-RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVV 589
R+ IG++ Q +L + T+F N+ L T ++ + RR +++ K+ +
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD--EVKRRVTELLSLVGLGDKHDSYP 138
Query: 590 GERGLKLSGGEKQRVALARAFLKAPPIL 617
LSGG+KQRVA+ARA P +L
Sbjct: 139 S----NLSGGQKQRVAIARALASNPKVL 162
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 79/148 (53%), Gaps = 11/148 (7%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC---EVTLESL 531
L+ VS VPAG+ ++G SG+GKST++R + GS+ +DGQ++ E L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 532 RKSIGVVPQD-TVLFNDTIFHNIRYG-RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVV 589
R+ IG++ Q +L + T+F N+ L T ++ + RR +++ K+ +
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD--EVKRRVTELLSLVGLGDKHDSYP 161
Query: 590 GERGLKLSGGEKQRVALARAFLKAPPIL 617
LSGG+KQRVA+ARA P +L
Sbjct: 162 S----NLSGGQKQRVAIARALASNPKVL 185
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 79/150 (52%), Gaps = 11/150 (7%)
Query: 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC---EVTLE 529
+ L+ VS VPAG+ ++G SG+GKST++R + GS+ +DGQ++ E L
Sbjct: 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101
Query: 530 SLRKSIGVVPQD-TVLFNDTIFHNIRYG-RLSATEEEVYDAARRAAIHDTIMNFPAKYST 587
R+ IG + Q +L + T+F N+ L T ++ + RR +++ K+ +
Sbjct: 102 KARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKD--EVKRRVTELLSLVGLGDKHDS 159
Query: 588 VVGERGLKLSGGEKQRVALARAFLKAPPIL 617
LSGG+KQRVA+ARA P +L
Sbjct: 160 YPS----NLSGGQKQRVAIARALASNPKVL 185
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 16/153 (10%)
Query: 462 DNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519
+NV FS+L +L ++ + G+ +AI G++GSGK+++L L+ + G I+
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 520 GQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIM 579
G+ + Q + + TI NI +G +S E + + I
Sbjct: 99 GR-------------VSFCSQFSWIMPGTIKENIIFG-VSYDEYRYKSVVKACQLQQDIT 144
Query: 580 NFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612
F + +TV+GE G+ LSGG++ R++LARA K
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYK 177
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 82/150 (54%), Gaps = 20/150 (13%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534
L+ ++ + G+ +A++G SGSGKST+L + + SG I D +D+ E L ++
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTE--LPPKDRN 76
Query: 535 IGVVPQDTVLFND-TIFHNIRYG--RLSATEEEVYDAARRAA--IH-DTIMN-FPAKYST 587
+G+V Q+ L+ T++ NI + A EE+ R A +H D ++N +P
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP----- 131
Query: 588 VVGERGLKLSGGEKQRVALARAFLKAPPIL 617
+LSGG++QRVA+ARA +K P +L
Sbjct: 132 ------WQLSGGQQQRVAIARALVKEPEVL 155
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 16/153 (10%)
Query: 462 DNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519
+NV FS+L +L ++ + G+ +AI G++GSGK+++L L+ + G I+
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 520 GQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIM 579
G+ + Q + + TI NI +G +S E + + I
Sbjct: 99 GR-------------VSFCSQFSWIMPGTIKENIIFG-VSYDEYRYKSVVKACQLQQDIT 144
Query: 580 NFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612
F + +TV+GE G+ LSGG++ R++LARA K
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYK 177
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 18/133 (13%)
Query: 490 IVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND-T 548
++G +G+GKS L L+ G +R++G DI + E R+ IG VPQD LF +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLS 86
Query: 549 IFHNIRYG----RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604
++ NI YG + V + A + I + PA+ LSGGE+QRV
Sbjct: 87 VYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPAR-----------LSGGERQRV 135
Query: 605 ALARAFLKAPPIL 617
ALARA + P +L
Sbjct: 136 ALARALVIQPRLL 148
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 17/147 (11%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534
LD +S V +G+ I+G +G+GK+ L L+ SG I +DG+D+ +++ E +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHD 73
Query: 535 IGVVPQDTVLF-NDTIFHNIRYG-RLSATEE--EVYDAARRAAIHDTIMNFPAKYSTVVG 590
I V Q+ LF + + N+ +G R+ ++ V D AR I + P
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-------- 125
Query: 591 ERGLKLSGGEKQRVALARAFLKAPPIL 617
L LSGGE+QRVALARA + P IL
Sbjct: 126 ---LTLSGGEQQRVALARALVTNPKIL 149
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 16/153 (10%)
Query: 462 DNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519
+NV FS+L +L ++ + G+ +AI G++GSGK+++L L+ + G I+
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 520 GQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIM 579
G+ + Q + + TI NI G +S E + + I
Sbjct: 99 GR-------------VSFCSQFSWIMPGTIKENIIRG-VSYDEYRYKSVVKACQLQQDIT 144
Query: 580 NFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612
F + +TV+GE G+ LSGG++ R++LARA K
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYK 177
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 16/153 (10%)
Query: 462 DNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519
+NV FS+L +L ++ + G+ +AI G++GSGK+++L L+ + G I+
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 520 GQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIM 579
G+ + Q + + TI NI G +S E + + I
Sbjct: 99 GR-------------VSFCSQFSWIMPGTIKENIISG-VSYDEYRYKSVVKACQLQQDIT 144
Query: 580 NFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612
F + +TV+GE G+ LSGG++ R++LARA K
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYK 177
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 73/155 (47%), Gaps = 21/155 (13%)
Query: 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI--CEVTLES 530
++L G++ + G+ V ++G SGSGKST LR L D G I IDG ++ + L
Sbjct: 17 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNK 76
Query: 531 LRKSIGVV-------PQDTVLFNDTIFH-NIRYGRLSATEEEVYDAARRAAIHDTIMNFP 582
+R+ +G+V P TVL N T+ +R E + + + + D +P
Sbjct: 77 VREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYP 136
Query: 583 AKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
LSGG+ QRVA+ARA P I+
Sbjct: 137 D-----------SLSGGQAQRVAIARALAMEPKIM 160
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 73/155 (47%), Gaps = 21/155 (13%)
Query: 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI--CEVTLES 530
++L G++ + G+ V ++G SGSGKST LR L D G I IDG ++ + L
Sbjct: 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNK 97
Query: 531 LRKSIGVV-------PQDTVLFNDTIFH-NIRYGRLSATEEEVYDAARRAAIHDTIMNFP 582
+R+ +G+V P TVL N T+ +R E + + + + D +P
Sbjct: 98 VREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYP 157
Query: 583 AKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
LSGG+ QRVA+ARA P I+
Sbjct: 158 D-----------SLSGGQAQRVAIARALAMEPKIM 181
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 70/139 (50%), Gaps = 14/139 (10%)
Query: 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533
+L ++F + G+ +A+ G++G+GK+++L ++ + G I+ G+
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 82
Query: 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593
I Q + + TI NI +G +S E + + + I F K + V+GE G
Sbjct: 83 -ISFCSQFSWIMPGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 140
Query: 594 LKLSGGEKQRVALARAFLK 612
+ LSGG++ R++LARA K
Sbjct: 141 ITLSGGQRARISLARAVYK 159
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 17/153 (11%)
Query: 462 DNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519
+NV FS+L +L ++ + G+ +AI G++GSGK+++L L+ + G I+
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 520 GQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIM 579
G+ + Q + + TI NI +S E + + I
Sbjct: 99 GR-------------VSFCSQFSWIMPGTIKENII--GVSYDEYRYKSVVKACQLQQDIT 143
Query: 580 NFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612
F + +TV+GE G+ LSGG++ R++LARA K
Sbjct: 144 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYK 176
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 70/139 (50%), Gaps = 14/139 (10%)
Query: 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533
+L ++F + G+ +A+ G++G+GK+++L ++ + G I+ G+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 70
Query: 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593
I Q + + TI NI +G +S E + + + I F K + V+GE G
Sbjct: 71 -ISFCSQFSWIMPGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 128
Query: 594 LKLSGGEKQRVALARAFLK 612
+ LSGG++ R++LARA K
Sbjct: 129 ITLSGGQRARISLARAVYK 147
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 17/155 (10%)
Query: 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
S+ F N FS L +L ++F + G+ +A+ G++G+GK+++L ++ + G I+
Sbjct: 40 SLSFSN--FSLLG-TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 96
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
G+ I Q + + TI NI G +S E + + +
Sbjct: 97 HSGR-------------ISFCSQFSWIMPGTIKENIIAG-VSYDEYRYRSVIKACQLEED 142
Query: 578 IMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612
I F K + V+GE G+ LSGG++ R++LARA K
Sbjct: 143 ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYK 177
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 18/155 (11%)
Query: 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
S+ F N FS L +L ++F + G+ +A+ G++G+GK+++L ++ + G I+
Sbjct: 40 SLSFSN--FSLLG-TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 96
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
G+ I Q++ + TI NI +S E + + +
Sbjct: 97 HSGR-------------ISFCSQNSWIMPGTIKENII--GVSYDEYRYRSVIKACQLEED 141
Query: 578 IMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612
I F K + V+GE G+ LSGG++ R++LARA K
Sbjct: 142 ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYK 176
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 15/139 (10%)
Query: 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533
+L ++F + G+ +A+ G++G+GK+++L ++ + G I+ G+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593
I Q++ + TI NI +S E + + + I F K + V+GE G
Sbjct: 101 -ISFCSQNSWIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 594 LKLSGGEKQRVALARAFLK 612
+ LSGG++ R++LARA K
Sbjct: 158 ITLSGGQRARISLARAVYK 176
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 21/153 (13%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC---EVTLESL 531
LD V+ + G+ I+G SG+GK+T +R++ +G + D + + ++ +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 532 RKSIGVVPQDTVLF-NDTIFHNIRYG--RLSATEEE----VYDAARRAAIHDTIMNFPAK 584
+ IG+V Q L+ N T F NI + + ++EE V + A+ IH + +FP +
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRE 140
Query: 585 YSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
LSGG++QRVALARA +K P +L
Sbjct: 141 -----------LSGGQQQRVALARALVKDPSLL 162
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 78/153 (50%), Gaps = 9/153 (5%)
Query: 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI 518
++ ++H+ ++ ++ +++ VS + +G+ VAI+G +G+GKST+LRLL G +
Sbjct: 12 LEASHLHY-HVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHL 70
Query: 519 DGQDICEVTLESLRKSIGVVPQDTVL-FNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
GQ++ ++L ++ V+ Q + L F ++ I+ GR + A ++
Sbjct: 71 LGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTD 130
Query: 578 IMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610
+ + V LSGGE+QRV LAR
Sbjct: 131 CLALAQRDYRV-------LSGGEQQRVQLARVL 156
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 15/139 (10%)
Query: 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533
+L ++F + G+ +A+ G++G+GK+++L ++ + G I+ G+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 70
Query: 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593
I Q + + TI NI +S E + + + I F K + V+GE G
Sbjct: 71 -ISFCSQFSWIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 127
Query: 594 LKLSGGEKQRVALARAFLK 612
+ LSGG++ R++LARA K
Sbjct: 128 ITLSGGQRARISLARAVYK 146
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 69/139 (49%), Gaps = 14/139 (10%)
Query: 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533
+L ++F + G+ +A+ G++G+GK+++L ++ + G I+ G+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593
I Q + + TI NI +G +S E + + + I F K + V+GE G
Sbjct: 101 -ISFCSQFSWIMPGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 158
Query: 594 LKLSGGEKQRVALARAFLK 612
+ LS G++ +++LARA K
Sbjct: 159 ITLSEGQQAKISLARAVYK 177
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 8/161 (4%)
Query: 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI 518
++ ++H Y I G+ VP G+ V ++G +G+GK+T L + G I
Sbjct: 7 LEVQSLHVYYGAIHAI-KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 519 DGQDICEVTLESL-RKSIGVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHD 576
+GQDI + R I +VP+ +F + T++ N+ G + ++E +R +
Sbjct: 66 NGQDITNKPAHVINRXGIALVPEGRRIFPELTVYENLXXGAYNRKDKE---GIKRDL--E 120
Query: 577 TIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
I + + + + G LSGGE+Q +A+ RA P +L
Sbjct: 121 WIFSLFPRLKERLKQLGGTLSGGEQQXLAIGRALXSRPKLL 161
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 78/153 (50%), Gaps = 21/153 (13%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC---EVTLESL 531
LD V+ + G+ I+G SG+GK+T +R++ +G + D + + ++ +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 532 RKSIGVVPQDTVLF-NDTIFHNIRYG--RLSATEEE----VYDAARRAAIHDTIMNFPAK 584
+ IG+V Q L+ N T F NI + + ++EE V + A+ IH + +FP +
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRE 140
Query: 585 YSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
LSG ++QRVALARA +K P +L
Sbjct: 141 -----------LSGAQQQRVALARALVKDPSLL 162
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 22/156 (14%)
Query: 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI---CEVTLE 529
+IL G+S V G+ V+I+G SGSGKST+L +L G + ++G+++ E L
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELS 77
Query: 530 SLR-KSIG-------VVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNF 581
LR + +G ++P+ T L N I ++ G+ +A R + +
Sbjct: 78 LLRNRKLGFVFQFHYLIPELTALEN-VIVPMLKMGKPKK------EAKERGEYLLSELGL 130
Query: 582 PAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
K S + +LSGGE+QRVA+ARA P +L
Sbjct: 131 GDKLS----RKPYELSGGEQQRVAIARALANEPILL 162
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 15/168 (8%)
Query: 457 GSIQFDNV----HFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH 512
G I+ NV H E+K L+ VS V+ G+ + + G +GSGKST+L+++ +
Sbjct: 3 GRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 62
Query: 513 SGSIRIDGQDICEVTLESLRKSIGVV---PQDTVLFNDTIFHNIRYGRLSATEEEVYDAA 569
SG + DG+ +R++IG+ P+D F + +F + + + +
Sbjct: 63 SGDVLYDGE---RKKGYEIRRNIGIAFQYPEDQ-FFAERVFDEVAFAVKNFYPDRDPVPL 118
Query: 570 RRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
+ A+ ++F + V LSGGEK+RVA+A + P IL
Sbjct: 119 VKKAMEFVGLDFDSFKDRV----PFFLSGGEKRRVAIASVIVHEPDIL 162
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 80/182 (43%), Gaps = 33/182 (18%)
Query: 459 IQFDNVHFSYLTER---KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH--- 512
I+ +++ YL K DG+S + AIVG S SGKSTI+ + ++ +
Sbjct: 5 IRVEDLRAVYLVREGTIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRI 64
Query: 513 -SGSIRIDGQDICEVTLESLR----KSIGVVPQDTVL-----------FNDTI-FHNIRY 555
SG + G+D+ + E LR K I +VPQ F DT+ H +R+
Sbjct: 65 LSGRVLYKGKDLLTMREEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRW 124
Query: 556 GRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615
S E+ + R ++ V+ L+LSGG KQRV +A A L P
Sbjct: 125 SH-SELIEKASEKLRMVRLNP---------EAVLNSYPLQLSGGMKQRVLIALALLLDPV 174
Query: 616 IL 617
+L
Sbjct: 175 VL 176
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 11/156 (7%)
Query: 465 HFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524
H E+K L+ VS V+ G+ + + G +GSGKST+L+++ + SG + DG+
Sbjct: 13 HRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGE--- 69
Query: 525 EVTLESLRKSIGVV---PQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNF 581
+R++IG+ P+D F + +F + + + + + A+ ++F
Sbjct: 70 RKKGYEIRRNIGIAFQYPEDQ-FFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDF 128
Query: 582 PAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
+ V LSGGEK+RVA+A + P IL
Sbjct: 129 DSFKDRV----PFFLSGGEKRRVAIASVIVHEPDIL 160
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 82/176 (46%), Gaps = 27/176 (15%)
Query: 459 IQFDNVHFSYLTERKI---LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGS 515
I+ NV +Y +I L V+ + G+ V+I+G SGSGKST+L ++ G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 516 IRIDG---QDICEVTLESLRKS-IG-------VVPQDTVLFNDTIFHNIRY-GRLSATE- 562
+ ID D+ + L +R+ IG ++P T L N + +Y G +S E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 563 -EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
+ + + A + + N +LSGG++QRVA+ARA PPI+
Sbjct: 122 RKRALECLKMAELEERFANHKPN----------QLSGGQQQRVAIARALANNPPII 167
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 27/176 (15%)
Query: 459 IQFDNVHFSYLTERKI---LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGS 515
++ NV +Y +I L V+ + G+ V+I+G SGSGKST+L ++ G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 516 IRIDG---QDICEVTLESLRKS-IG-------VVPQDTVLFNDTIFHNIRY-GRLSATE- 562
+ ID D+ + L +R+ IG ++P T L N + +Y G +S E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 563 -EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
+ + + A + + N +LSGG++QRVA+ARA PPI+
Sbjct: 122 RKRALECLKMAELEERFANHKPN----------QLSGGQQQRVAIARALANNPPII 167
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 13/165 (7%)
Query: 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI 518
++ + ++++Y L G++ + G+ AI+G +G GKST+ + SG I
Sbjct: 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF 67
Query: 519 DGQ--DICEVTLESLRKSIGVVPQ--DTVLFNDTIFHNIRYG--RLSATEEEVYDAARRA 572
D + D + LR+SIG+V Q D LF+ +++ ++ +G + E+E+ A
Sbjct: 68 DNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNA 127
Query: 573 AIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
I + K + LS G+K+RVA+A + P +L
Sbjct: 128 LKRTGIEHLKDKPTHC-------LSFGQKKRVAIAGVLVMEPKVL 165
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 67/139 (48%), Gaps = 15/139 (10%)
Query: 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533
+L ++F + G+ +A+ G++G+GK+++L ++ + G I+ G+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593
I Q + + TI NI +S E + + + I F K + V+GE G
Sbjct: 101 -ISFCSQFSWIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 594 LKLSGGEKQRVALARAFLK 612
+ LS G++ +++LARA K
Sbjct: 158 ITLSEGQQAKISLARAVYK 176
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 78/176 (44%), Gaps = 27/176 (15%)
Query: 459 IQFDNVHFSYLTERKI---LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGS 515
I+ NV +Y +I L V+ + G+ V+I G SGSGKST L ++ G
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 516 IRIDG---QDICEVTLESLRKS-IG-------VVPQDTVLFNDTIFHNIRYGRLSATEEE 564
+ ID D+ + L +R+ IG ++P T L N + +Y + EE
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEER 121
Query: 565 ---VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
+ + A + + N +LSGG++QRVA+ARA PPI+
Sbjct: 122 RKRALECLKXAELEERFANHKPN----------QLSGGQQQRVAIARALANNPPII 167
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 26/169 (15%)
Query: 467 SYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526
Y E K LDGVS V G I+G +GSGKST++ ++ G + + +DI
Sbjct: 15 KYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNK 74
Query: 527 TLESLRKSIGVV-----PQD----TVLFN---------DTIFHNIRYGRLSATEEEVYDA 568
L G+V PQ TVL N ++ +++ Y + EEE+ +
Sbjct: 75 EPAELY-HYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEK 133
Query: 569 ARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
A + I+ F K S + + +LSGG+ + V + RA + P ++
Sbjct: 134 AFK------ILEF-LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMI 175
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 26/169 (15%)
Query: 467 SYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526
Y E K LDGVS V G I+G +GSGKST++ ++ G + + +DI
Sbjct: 15 KYFGEFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNK 74
Query: 527 TLESLRKSIGVV-----PQD----TVLFN---------DTIFHNIRYGRLSATEEEVYDA 568
L G+V PQ TVL N ++ +++ Y + EEE+ +
Sbjct: 75 EPAELY-HYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEK 133
Query: 569 ARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
A + I+ F K S + + +LSGG+ + V + RA + P ++
Sbjct: 134 AFK------ILEF-LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMI 175
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 26/169 (15%)
Query: 467 SYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526
Y E K LDGVS V G I+G +GSGKST++ ++ G + + +DI
Sbjct: 15 KYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNK 74
Query: 527 TLESLRKSIGVV-----PQD----TVLFN---------DTIFHNIRYGRLSATEEEVYDA 568
L G+V PQ TVL N ++ +++ Y + EEE+ +
Sbjct: 75 EPAELY-HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEK 133
Query: 569 ARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
A + I+ F K S + + +LSGG+ + V + RA + P ++
Sbjct: 134 AFK------ILEF-LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMI 175
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 23/155 (14%)
Query: 469 LTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL 528
+ +++IL G+SF + G+ ++G +G+GK+T LR++ SG + + G+++ E
Sbjct: 25 IGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPH 84
Query: 529 ESLRKSIGVVPQDTVLFNDTIFHNIRYGRL---------SATEEEVYDAARRAAIHDTIM 579
E +RK I +P++ + + I Y R S EE V A A + + I
Sbjct: 85 E-VRKLISYLPEEAGAYRN--MQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK 141
Query: 580 NFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614
+ + YS G +++ +ARA + P
Sbjct: 142 DRVSTYSK-----------GMVRKLLIARALMVNP 165
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 20/168 (11%)
Query: 459 IQFDNVHFSYLTER----KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG 514
I+ V LT+R ++ ++ + G+ + ++G SG GK+T LR++ + G
Sbjct: 8 IKMVEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG 67
Query: 515 SIRIDGQDIC-----EVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAA 569
I +D+ + + + +S V P TV N I+ ++ V AA
Sbjct: 68 RIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 127
Query: 570 RRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
I + + +PA+ LSGG++QRVA+ARA + P +L
Sbjct: 128 ELLQIEELLNRYPAQ-----------LSGGQRQRVAVARAIVVEPDVL 164
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 20/168 (11%)
Query: 459 IQFDNVHFSYLTER----KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG 514
I+ V LT+R ++ ++ + G+ + ++G SG GK+T LR++ + G
Sbjct: 7 IKMVEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG 66
Query: 515 SIRIDGQDIC-----EVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAA 569
I +D+ + + + +S V P TV N I+ ++ V AA
Sbjct: 67 RIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 126
Query: 570 RRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
I + + +PA+ LSGG++QRVA+ARA + P +L
Sbjct: 127 ELLQIEELLNRYPAQ-----------LSGGQRQRVAVARAIVVEPDVL 163
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 464 VHFSYLTER----KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519
+H +L++ +L+ +S + G+ + I+G SG GK+T+LR L SG I +
Sbjct: 5 LHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLS 64
Query: 520 GQDI--CEVTLESLRKSIGVVPQDTVLFND-TIFHNIRYG 556
G+ I L + +G + Q+ VLF T++ NI YG
Sbjct: 65 GKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYG 104
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 81/161 (50%), Gaps = 11/161 (6%)
Query: 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
S+Q NV ++ E + ++ + G+ V VG SG GKST+LR++ SG +
Sbjct: 3 SVQLQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNIRYG-RLSATEEEVYDAARRAAIH 575
I + + + + +G+V Q L+ ++ N+ +G +L+ ++EV + R +
Sbjct: 62 IGEKRMNDTP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVIN-QRVNQVA 118
Query: 576 DTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPI 616
+ + + + ++ + LSGG++QRVA+ R + P +
Sbjct: 119 EVL-----QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV 154
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 81/161 (50%), Gaps = 11/161 (6%)
Query: 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
S+Q NV ++ E + ++ + G+ V VG SG GKST+LR++ SG +
Sbjct: 3 SVQLQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNIRYG-RLSATEEEVYDAARRAAIH 575
I + + + + +G+V Q L+ ++ N+ +G +L+ ++EV + R +
Sbjct: 62 IGEKRMNDTP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVIN-QRVNQVA 118
Query: 576 DTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPI 616
+ + + + ++ + LSGG++QRVA+ R + P +
Sbjct: 119 EVL-----QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV 154
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 81/161 (50%), Gaps = 11/161 (6%)
Query: 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
S+Q NV ++ E + ++ + G+ V VG SG GKST+LR++ SG +
Sbjct: 3 SVQLQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNIRYG-RLSATEEEVYDAARRAAIH 575
I + + + + +G+V Q L+ ++ N+ +G +L+ ++EV + R +
Sbjct: 62 IGEKRMNDTP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVIN-QRVNQVA 118
Query: 576 DTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPI 616
+ + + + ++ + LSGG++QRVA+ R + P +
Sbjct: 119 EVL-----QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV 154
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF--RSFDTHSGSIRIDGQDICEVTL-ES 530
IL GV+ VVP G+ A++G +G+GKST+ ++L + G I +DG++I E++ E
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 531 LRKSI 535
RK +
Sbjct: 78 ARKGL 82
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 22/159 (13%)
Query: 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV--TLE 529
+ IL +S+ + G + G +G+GK+T+L +L SG++ + G+ +V + E
Sbjct: 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAE 93
Query: 530 SLRKSIGVVP-------QDTVLFNDTI----FHNIRYGRLSATEEEVYDAARRAAIHDTI 578
++R+ IG V Q+ D + F +I G ++E+ + A + +
Sbjct: 94 TVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSI--GVYQDIDDEIRNEAHQLL---KL 148
Query: 579 MNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
+ AK +G LS GEKQRV +ARA P +L
Sbjct: 149 VGXSAKAQQYIG----YLSTGEKQRVXIARALXGQPQVL 183
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 27/159 (16%)
Query: 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
++ +N+ F Y E + ++F + G +A++G +G GKST+L LL G I
Sbjct: 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63
Query: 518 IDGQDICEVTLESLRKSIGVVPQ-DTVLFNDTIFHNIRYGR------LSATEEEVYDAAR 570
+ +SIG VPQ + F ++ + GR + + Y A
Sbjct: 64 V-------------YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAM 110
Query: 571 RAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609
+A + + + + T LSGG++Q + +ARA
Sbjct: 111 QALDYLNLTHLAKREFT-------SLSGGQRQLILIARA 142
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 24/157 (15%)
Query: 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI 518
I+ ++V F Y + +L V+ GK +VG +GSGK+T+L++L +G I +
Sbjct: 12 IELNSVSFRYNGDY-VLKDVNAEFETGKIYVVVGKNGSGKTTLLKIL-AGLLAAAGEIFL 69
Query: 519 DGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSAT-EEEVYDAARRAAIHDT 577
DG LRK++G V F N + AT EE+V + + ++
Sbjct: 70 DGSPADPFL---LRKNVGYV-----------FQNPSSQIIGATVEEDVAFSLEIMGLDES 115
Query: 578 IM-NFPAKYSTVVGERG------LKLSGGEKQRVALA 607
M K +VG G L LSGG+KQR+A+A
Sbjct: 116 EMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAIA 152
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 69/145 (47%), Gaps = 12/145 (8%)
Query: 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE----VTLESLRK 533
+S + G+ + ++G SG GK+T LR + + G I I+ + + V + +
Sbjct: 25 LSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKER 84
Query: 534 SIGVVPQDTVLF-NDTIFHNIRYG-RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGE 591
+ V Q L+ + T++ NI + +L ++ D R + + ++
Sbjct: 85 DVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGL------TELLNR 138
Query: 592 RGLKLSGGEKQRVALARAFLKAPPI 616
+ +LSGG++QRVAL RA ++ P +
Sbjct: 139 KPRELSGGQRQRVALGRAIIRRPKV 163
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 16/155 (10%)
Query: 464 VHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI 523
+ + E L +S V AG+ + +VG +G+GKST+L + + GSI+ GQ +
Sbjct: 5 MQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMA-GMTSGKGSIQFAGQPL 63
Query: 524 --CEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVY-DAARRAAIHDTIMN 580
T +L ++ + Q T F ++H + + T E+ D A A+ D +
Sbjct: 64 EAWSATKLALHRAY-LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL-- 120
Query: 581 FPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615
G +LSGGE QRV LA L+ P
Sbjct: 121 ---------GRSTNQLSGGEWQRVRLAAVVLQITP 146
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 16/150 (10%)
Query: 469 LTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI--CEV 526
+ E L +S V AG+ + +VG +G+GKST+L + + GSI+ GQ +
Sbjct: 10 VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMA-GMTSGKGSIQFAGQPLEAWSA 68
Query: 527 TLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVY-DAARRAAIHDTIMNFPAKY 585
T +L ++ + Q T F ++H + + T E+ D A A+ D +
Sbjct: 69 TKLALHRAY-LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL------- 120
Query: 586 STVVGERGLKLSGGEKQRVALARAFLKAPP 615
G +LSGGE QRV LA L+ P
Sbjct: 121 ----GRSTNQLSGGEWQRVRLAAVVLQITP 146
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 70/145 (48%), Gaps = 12/145 (8%)
Query: 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE----VTLESLRK 533
+S V G+ + ++G SG GK+T LR++ + G I I + + + + + +
Sbjct: 22 MSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81
Query: 534 SIGVVPQDTVLFND-TIFHNIRYG-RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGE 591
I +V Q L+ T++ NI + +L + D R ++ + ++
Sbjct: 82 DIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAE--LLGL----TELLNR 135
Query: 592 RGLKLSGGEKQRVALARAFLKAPPI 616
+ +LSGG++QRVAL RA ++ P +
Sbjct: 136 KPRELSGGQRQRVALGRAIVRKPQV 160
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 23/162 (14%)
Query: 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV------ 526
++L GVS AG ++I+G+SGSGKST LR + G+I ++GQ+I V
Sbjct: 20 EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQ 79
Query: 527 -------TLESLRKSIGVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTI 578
L LR + +V Q L++ T+ N+ + +DA RA
Sbjct: 80 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERA------ 133
Query: 579 MNFPAKYST---VVGERGLKLSGGEKQRVALARAFLKAPPIL 617
+ + AK G+ + LSGG++QRV++ARA P +L
Sbjct: 134 LKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVL 175
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 69/152 (45%), Gaps = 20/152 (13%)
Query: 469 LTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS--GSIRIDGQDI--C 524
+ E L +S V AG+ + +VG +G+GKST LL R S GSI+ GQ +
Sbjct: 10 VAESTRLGPLSGEVRAGEILHLVGPNGAGKST---LLARXAGXTSGKGSIQFAGQPLEAW 66
Query: 525 EVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVY-DAARRAAIHDTIMNFPA 583
T +L ++ + Q T F ++H + + T E+ D A A+ D +
Sbjct: 67 SATKLALHRAY-LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL----- 120
Query: 584 KYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615
G +LSGGE QRV LA L+ P
Sbjct: 121 ------GRSTNQLSGGEWQRVRLAAVVLQITP 146
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 69/152 (45%), Gaps = 20/152 (13%)
Query: 469 LTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS--GSIRIDGQDI--C 524
+ E L +S V AG+ + +VG +G+GKST LL R S GSI+ GQ +
Sbjct: 10 VAESTRLGPLSGEVRAGEILHLVGPNGAGKST---LLARXAGXTSGKGSIQFAGQPLEAW 66
Query: 525 EVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVY-DAARRAAIHDTIMNFPA 583
T +L ++ + Q T F ++H + + T E+ D A A+ D +
Sbjct: 67 SATKLALHRAY-LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL----- 120
Query: 584 KYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615
G +LSGGE QRV LA L+ P
Sbjct: 121 ------GRSTNQLSGGEWQRVRLAAVVLQITP 146
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 463 NVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF--RSFDTHSGSIRIDG 520
++H S + ++ IL G+S V G+ AI+G +GSGKST+ L ++ G++ G
Sbjct: 6 DLHVS-VEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG 64
Query: 521 QDICEVTLES 530
+D+ ++ E
Sbjct: 65 KDLLALSPED 74
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 463 NVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF--RSFDTHSGSIRIDG 520
++H S + ++ IL G+S V G+ AI+G +GSGKST+ L ++ G++ G
Sbjct: 25 DLHVS-VEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG 83
Query: 521 QDICEVTLES 530
+D+ ++ E
Sbjct: 84 KDLLALSPED 93
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 23/124 (18%)
Query: 488 VAIVGTSGSGKSTILRLLFRSFDTHSGSIRID-GQDICEVTLESLRKSIGVVPQDTVLFN 546
+ ++G +G+GK+T+++LL +G+++ D GQDI ++ + K + P+
Sbjct: 381 LVMMGENGTGKTTLIKLL-------AGALKPDEGQDIPKLNVSM--KPQKIAPKFPGTVR 431
Query: 547 DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606
F IR L+ T + P + ++ + LSGGE QRVA+
Sbjct: 432 QLFFKKIRGQFLNPQ-------------FQTDVVKPLRIDDIIDQEVQHLSGGELQRVAI 478
Query: 607 ARAF 610
A
Sbjct: 479 VLAL 482
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 459 IQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGS 515
IQ NV + ER L+ ++ V G+ V I+G +GSGK+T+LR + +SG+
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAI-SGLLPYSGN 59
Query: 516 IRIDGQDICEV 526
I I+G ++ ++
Sbjct: 60 IFINGMEVRKI 70
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTIL-RLLFRSF 509
L VS +P G VA+ G SGSGKST++ +L+++
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKAL 675
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT 511
L + +P GK V + G SGSGKS++ +FDT
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL------AFDT 64
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTIL-RLLFRSF 509
L VS +P G VA+ G SGSGKST++ +L+++
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKAL 675
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTIL-RLLFRSF 509
L VS +P G VA+ G SGSGKST++ +L+++
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKAL 373
>pdb|3FHJ|D Chain D, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 287
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 187 IARTTASAFNELRTAVFSKVALRTIRSVSRK----------VFSHLHELDLRYHLSRETG 236
I + SA + L ++S ++ ++I + R+ V L + RYH E+
Sbjct: 196 IEKKIKSAISNLLN-IYSTLSGQSIEELERQYVFKADLAQVVIETLRPIQERYHHWMESE 254
Query: 237 ALNRIIDRGSRAINFILSSMV 257
L+R++D G+ N + S MV
Sbjct: 255 ELDRVLDEGAEKANRVASEMV 275
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 459 IQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI 516
++ N+ F Y T + + ++F +A++G +G+GKST++ +L SG +
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 62/159 (38%), Gaps = 30/159 (18%)
Query: 463 NVHFSYLTERKIL-DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG- 520
N FS KIL + + + I G +G GKST++R + ++DG
Sbjct: 438 NCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANG--------QVDGF 489
Query: 521 --QDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTI 578
Q+ C + I DT + D +F + T+E + D D +
Sbjct: 490 PTQEECRTVY--VEHDIDGTHSDTSVL-DFVFES-----GVGTKEAIKDKLIEFGFTDEM 541
Query: 579 MNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
+ P LSGG K ++ALARA L+ IL
Sbjct: 542 IAMPIS----------ALSGGWKMKLALARAVLRNADIL 570
>pdb|3FHJ|C Chain C, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 280
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 213 SVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMV 257
+++ V L + RYH E+ L+R++D G+ N + S MV
Sbjct: 224 DLAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMV 268
>pdb|3FHJ|E Chain E, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 293
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 213 SVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMV 257
+++ V L + RYH E+ L+R++D G+ N + S MV
Sbjct: 237 DLAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMV 281
>pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|B Chain B, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|C Chain C, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|D Chain D, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|E Chain E, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|F Chain F, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site
Length = 326
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 213 SVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMV 257
+++ V L + RYH E+ L+R++D G+ N + S MV
Sbjct: 271 DLAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMV 315
>pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1M83|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In A Closed, Pre-Transition State
Conformation
pdb|1MAU|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp And Tryptophanamide In A
Pre-Transition State Conformation
pdb|1MAW|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MB2|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|2OV4|A Chain A, Crystal Structure Of B. Stearothermophilus Tryptophanyl
Trna Synthetase In Complex With Adenosine Tetraphosphate
Length = 328
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 214 VSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMV 257
+++ V L + RYH E+ L+R++D G+ N + S MV
Sbjct: 272 LAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMV 315
>pdb|3FHJ|A Chain A, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 300
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 214 VSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMV 257
+++ V L + RYH E+ L+R++D G+ N + S MV
Sbjct: 245 LAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMV 288
>pdb|1TQ4|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 448 NAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507
N + L ++ G+IQ LT I D + + + +VA+ G +GSGKS+ + L
Sbjct: 40 NLIELRMRAGNIQ--------LTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91
Query: 508 SFDTHSGSIRIDGQDICEVTLE 529
+ G+ + + EVT+E
Sbjct: 92 IGNEEEGAAKT---GVVEVTME 110
>pdb|3FHJ|B Chain B, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 292
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 214 VSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMV 257
+++ V L + RYH E+ L+R++D G+ N + S MV
Sbjct: 237 LAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMV 280
>pdb|3FHJ|F Chain F, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 297
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 214 VSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMV 257
+++ V L + RYH E+ L+R++D G+ N + S MV
Sbjct: 242 LAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMV 285
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 459 IQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI 516
++ N F Y T + + ++F +A++G +G+GKST++ +L SG +
Sbjct: 666 VKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 724
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 459 IQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI 516
++ N F Y T + + ++F +A++G +G+GKST++ +L SG +
Sbjct: 672 VKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 23/105 (21%)
Query: 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTIL-RLLFRSFDTH------------------ 512
R LD + P G ++ G SGSGKST++ + L + H
Sbjct: 510 RNNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADH 569
Query: 513 -SGSIRIDGQDICEVT--LESLRKSIGVVPQDTVLFNDTIFHNIR 554
+GS R+ G D+ ++T + +K IG P+ + +F +R
Sbjct: 570 TAGSARLGG-DLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVR 613
>pdb|4H8P|A Chain A, Neat5 Domain Of Isdx2, A B. Anthracis Hemophore In Complex
With Heme
Length = 129
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 293 YVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAF 340
Y+ TL ++W TKF+ N DA + D N V++ N+ F
Sbjct: 51 YIAMTLKNSEWITKFQTEKNGGFADAKVVSEDKAANTRVVEFEANDLF 98
>pdb|4H8Q|A Chain A, Structure Of The Q29t Isdx2-neat5 Mutant In Complex With
Heme
Length = 129
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 293 YVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAF 340
Y+ TL ++W TKF+ N DA + D N V++ N+ F
Sbjct: 51 YIAMTLKNSEWITKFQTEKNGGFADAKVVSEDKAANTRVVEFEANDLF 98
>pdb|1TQ6|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 448 NAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507
N + L ++ G+IQ LT I D + + + +VA+ G +GSGKS+ + L
Sbjct: 40 NLIELRMRKGNIQ--------LTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91
Query: 508 SFDTHSGSIRIDGQDICEVTLE 529
+ G+ + + EVT+E
Sbjct: 92 IGNEEEGAAKT---GVVEVTME 110
>pdb|1TQD|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQD|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 448 NAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507
N + L ++ G+IQ LT I D + + + +VA+ G +GSGKS+ + L
Sbjct: 40 NLIELRMRKGNIQ--------LTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91
Query: 508 SFDTHSGSIRIDGQDICEVTLE 529
+ G+ + + EVT+E
Sbjct: 92 IGNEEEGAAKT---GVVEVTME 110
>pdb|1TPZ|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TPZ|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 422
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 448 NAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507
N + L ++ G+IQ LT I D + + + +VA+ G +GSGKS+ + L
Sbjct: 40 NLIELRMRKGNIQ--------LTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91
Query: 508 SFDTHSGSIRIDGQDICEVTLE 529
+ G+ + + EVT+E
Sbjct: 92 IGNEEEGAAKT---GVVEVTME 110
>pdb|2RC5|A Chain A, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC5|B Chain B, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC5|C Chain C, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC5|D Chain D, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC6|A Chain A, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
pdb|2RC6|B Chain B, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
pdb|2RC6|C Chain C, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
pdb|2RC6|D Chain D, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
Length = 314
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 443 IQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSG 497
I RDN N G+IQF V +Y+ + K D V+ P+GK + T SG
Sbjct: 115 IIKRDNIYDEN---GNIQFKGVCSNYMCDLKPGDEVTMTGPSGKKFLLPNTDFSG 166
>pdb|1OJL|A Chain A, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|B Chain B, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|C Chain C, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|D Chain D, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|E Chain E, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|F Chain F, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
Length = 304
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519
+L+ ++ V P+ +V I G SG+GK + R L H+ S R D
Sbjct: 14 LLNEIAMVAPSDATVLIHGDSGTGKELVARAL------HACSARSD 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,007,516
Number of Sequences: 62578
Number of extensions: 557756
Number of successful extensions: 3791
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 3578
Number of HSP's gapped (non-prelim): 154
length of query: 617
length of database: 14,973,337
effective HSP length: 105
effective length of query: 512
effective length of database: 8,402,647
effective search space: 4302155264
effective search space used: 4302155264
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)