Query 007122
Match_columns 617
No_of_seqs 323 out of 2840
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 19:14:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007122.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007122hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058 Peptide exporter, ABC 100.0 2.4E-89 5.3E-94 738.6 57.8 492 106-617 133-626 (716)
2 COG2274 SunT ABC-type bacterio 100.0 1.7E-85 3.7E-90 736.4 63.1 530 56-617 92-631 (709)
3 KOG0057 Mitochondrial Fe/S clu 100.0 3.5E-84 7.6E-89 675.8 51.6 500 105-617 10-509 (591)
4 KOG0056 Heavy metal exporter H 100.0 5E-83 1.1E-87 652.7 29.3 498 109-617 199-696 (790)
5 TIGR01193 bacteriocin_ABC ABC- 100.0 7.7E-79 1.7E-83 701.6 65.0 530 56-617 92-633 (708)
6 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.5E-78 5.5E-83 697.9 64.7 530 56-617 92-637 (710)
7 TIGR03375 type_I_sec_LssB type 100.0 3.2E-77 7E-82 686.6 66.0 532 56-617 79-623 (694)
8 TIGR02868 CydC thiol reductant 100.0 9.6E-77 2.1E-81 663.3 64.2 479 123-617 11-492 (529)
9 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.3E-76 2.7E-81 680.9 66.9 524 56-617 78-610 (686)
10 KOG0055 Multidrug/pheromone ex 100.0 2.9E-76 6.3E-81 670.1 60.8 425 192-617 720-1148(1228)
11 PRK11174 cysteine/glutathione 100.0 3.5E-75 7.5E-80 658.7 65.4 489 108-617 10-507 (588)
12 TIGR01846 type_I_sec_HlyB type 100.0 1.4E-74 3.1E-79 664.3 66.0 527 56-617 78-615 (694)
13 TIGR00958 3a01208 Conjugate Tr 100.0 1.1E-73 2.3E-78 656.8 66.2 490 107-617 148-639 (711)
14 COG1132 MdlB ABC-type multidru 100.0 7.6E-73 1.6E-77 636.4 64.8 474 124-617 14-487 (567)
15 COG5265 ATM1 ABC-type transpor 100.0 1.2E-74 2.6E-79 586.0 33.0 419 199-617 2-421 (497)
16 TIGR02857 CydD thiol reductant 100.0 2.9E-71 6.2E-76 619.1 63.7 477 125-617 3-480 (529)
17 PRK11176 lipid transporter ATP 100.0 7.9E-71 1.7E-75 622.7 66.2 488 108-617 13-502 (582)
18 PTZ00265 multidrug resistance 100.0 2.4E-71 5.2E-76 671.1 65.7 488 108-617 813-1380(1466)
19 PRK11160 cysteine/glutathione 100.0 8.6E-71 1.9E-75 619.2 64.7 489 110-617 6-497 (574)
20 PRK10790 putative multidrug tr 100.0 3.7E-70 8.1E-75 617.9 66.4 477 123-617 21-498 (592)
21 TIGR02203 MsbA_lipidA lipid A 100.0 7E-70 1.5E-74 614.0 65.4 479 122-617 11-491 (571)
22 PRK13657 cyclic beta-1,2-gluca 100.0 2.6E-69 5.7E-74 610.2 67.1 487 108-617 7-493 (588)
23 TIGR01192 chvA glucan exporter 100.0 1.6E-68 3.4E-73 601.7 67.0 487 108-617 7-493 (585)
24 TIGR02204 MsbA_rel ABC transpo 100.0 2.7E-68 5.8E-73 601.5 65.9 490 108-617 6-498 (576)
25 COG4988 CydD ABC-type transpor 100.0 7.6E-68 1.6E-72 562.2 60.7 423 193-617 54-478 (559)
26 PRK10789 putative multidrug tr 100.0 3.9E-68 8.4E-73 597.4 61.1 468 135-617 5-473 (569)
27 KOG0055 Multidrug/pheromone ex 100.0 2.3E-69 5E-74 613.8 44.7 424 193-617 85-511 (1228)
28 TIGR01842 type_I_sec_PrtD type 100.0 1.4E-66 3.1E-71 582.5 63.5 471 123-617 4-476 (544)
29 TIGR00957 MRP_assoc_pro multi 100.0 1.9E-66 4.2E-71 634.7 62.9 419 194-617 1020-1443(1522)
30 PLN03130 ABC transporter C fam 100.0 3E-65 6.5E-70 623.5 63.4 487 106-617 899-1396(1622)
31 COG4987 CydC ABC-type transpor 100.0 7.3E-65 1.6E-69 530.6 54.0 477 124-617 15-496 (573)
32 PTZ00243 ABC transporter; Prov 100.0 2.7E-64 6E-69 614.3 62.8 413 202-617 1021-1468(1560)
33 PTZ00265 multidrug resistance 100.0 4.9E-64 1.1E-68 607.5 62.9 487 108-617 47-601 (1466)
34 PLN03232 ABC transporter C fam 100.0 3.9E-64 8.5E-69 613.6 61.8 419 193-617 964-1393(1495)
35 KOG0054 Multidrug resistance-a 100.0 6E-64 1.3E-68 582.6 50.8 420 191-617 870-1297(1381)
36 COG4618 ArpD ABC-type protease 100.0 1.3E-63 2.8E-68 516.4 45.9 471 125-617 23-494 (580)
37 TIGR01194 cyc_pep_trnsptr cycl 100.0 2.2E-62 4.7E-67 549.0 57.2 473 109-617 6-492 (555)
38 PLN03232 ABC transporter C fam 100.0 6E-61 1.3E-65 585.7 62.8 459 123-617 299-762 (1495)
39 PLN03130 ABC transporter C fam 100.0 2.3E-60 5E-65 580.6 63.7 461 123-617 299-762 (1622)
40 TIGR01271 CFTR_protein cystic 100.0 1.6E-60 3.6E-65 580.9 62.2 418 194-617 940-1375(1490)
41 KOG0054 Multidrug resistance-a 100.0 7.6E-58 1.6E-62 531.7 56.4 474 105-617 189-665 (1381)
42 PRK10522 multidrug transporter 100.0 6.8E-57 1.5E-61 504.4 57.3 458 122-617 10-471 (547)
43 TIGR00954 3a01203 Peroxysomal 100.0 8.8E-56 1.9E-60 502.6 58.6 486 107-617 78-604 (659)
44 TIGR00957 MRP_assoc_pro multi 100.0 5.7E-55 1.2E-59 533.9 63.4 472 105-617 305-782 (1522)
45 TIGR01271 CFTR_protein cystic 100.0 1.4E-52 3E-57 511.4 62.4 458 124-617 79-570 (1490)
46 PTZ00243 ABC transporter; Prov 100.0 1.2E-50 2.5E-55 494.9 61.0 474 105-617 232-804 (1560)
47 COG4178 ABC-type uncharacteriz 100.0 2.6E-37 5.7E-42 334.6 50.2 407 195-617 102-537 (604)
48 cd03289 ABCC_CFTR2 The CFTR su 100.0 3.4E-38 7.4E-43 321.2 17.6 159 457-617 1-160 (275)
49 COG4615 PvdE ABC-type sideroph 100.0 6E-34 1.3E-38 286.8 43.7 401 198-617 67-470 (546)
50 PRK14257 phosphate ABC transpo 100.0 2.5E-36 5.3E-41 315.4 17.4 157 454-617 76-247 (329)
51 COG1117 PstB ABC-type phosphat 100.0 1.1E-35 2.3E-40 278.1 13.2 152 458-617 7-171 (253)
52 COG2884 FtsE Predicted ATPase 100.0 9.9E-36 2.1E-40 273.5 10.1 148 459-617 2-159 (223)
53 cd03244 ABCC_MRP_domain2 Domai 100.0 1.1E-34 2.4E-39 287.9 17.8 159 458-617 2-161 (221)
54 cd03254 ABCC_Glucan_exporter_l 100.0 1E-34 2.2E-39 289.7 17.5 160 458-617 2-161 (229)
55 cd03252 ABCC_Hemolysin The ABC 100.0 1.3E-34 2.9E-39 290.3 17.2 159 459-617 1-160 (237)
56 cd03253 ABCC_ATM1_transporter 100.0 2.4E-34 5.3E-39 288.3 17.4 159 459-617 1-159 (236)
57 COG1126 GlnQ ABC-type polar am 100.0 1.4E-34 2.9E-39 272.1 12.8 148 458-617 2-158 (240)
58 cd03288 ABCC_SUR2 The SUR doma 100.0 5.1E-34 1.1E-38 289.4 18.0 161 456-617 17-178 (257)
59 COG3839 MalK ABC-type sugar tr 100.0 2.5E-34 5.4E-39 294.5 15.7 146 458-617 3-155 (338)
60 KOG0060 Long-chain acyl-CoA tr 100.0 7.6E-31 1.6E-35 276.3 41.6 298 310-616 256-591 (659)
61 cd03245 ABCC_bacteriocin_expor 100.0 1E-33 2.2E-38 280.7 18.1 160 458-617 2-162 (220)
62 cd03251 ABCC_MsbA MsbA is an e 100.0 1.2E-33 2.6E-38 282.9 17.6 159 459-617 1-160 (234)
63 COG1125 OpuBA ABC-type proline 100.0 1.8E-34 3.9E-39 276.5 10.9 147 459-617 2-157 (309)
64 cd03248 ABCC_TAP TAP, the Tran 100.0 1.6E-33 3.4E-38 280.5 17.0 162 456-617 9-172 (226)
65 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2.6E-33 5.6E-38 281.2 16.7 159 459-617 1-161 (238)
66 cd03250 ABCC_MRP_domain1 Domai 100.0 2.7E-33 5.8E-38 274.4 16.1 145 459-617 1-149 (204)
67 COG3638 ABC-type phosphate/pho 100.0 1.6E-33 3.4E-38 268.2 13.5 149 458-617 3-169 (258)
68 COG1135 AbcC ABC-type metal io 100.0 1.5E-33 3.3E-38 278.1 13.4 148 459-617 2-163 (339)
69 cd03290 ABCC_SUR1_N The SUR do 100.0 5.3E-33 1.1E-37 275.2 17.0 158 459-617 1-162 (218)
70 COG1136 SalX ABC-type antimicr 100.0 5.2E-33 1.1E-37 269.3 15.8 149 459-617 2-164 (226)
71 COG1116 TauB ABC-type nitrate/ 100.0 4.5E-33 9.7E-38 269.8 13.5 143 458-617 3-152 (248)
72 COG1120 FepC ABC-type cobalami 100.0 7.4E-33 1.6E-37 273.4 13.7 148 458-617 2-160 (258)
73 COG3842 PotA ABC-type spermidi 100.0 7.7E-33 1.7E-37 285.0 13.5 146 458-617 5-158 (352)
74 TIGR00960 3a0501s02 Type II (G 100.0 8.7E-33 1.9E-37 273.2 13.4 148 459-617 2-160 (216)
75 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 4.4E-32 9.6E-37 266.5 14.8 145 458-617 4-161 (254)
76 PRK13631 cbiO cobalt transport 100.0 1.1E-31 2.5E-36 279.4 18.7 154 457-617 20-198 (320)
77 cd03260 ABC_PstB_phosphate_tra 100.0 4.7E-32 1E-36 270.1 13.8 149 459-617 1-163 (227)
78 PRK13647 cbiO cobalt transport 100.0 8.4E-32 1.8E-36 275.5 15.7 149 458-617 4-160 (274)
79 TIGR02673 FtsE cell division A 100.0 6E-32 1.3E-36 266.9 14.1 148 459-617 2-159 (214)
80 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.4E-31 2.9E-36 262.9 16.4 142 457-617 5-147 (207)
81 COG3840 ThiQ ABC-type thiamine 100.0 4.3E-32 9.2E-37 247.5 11.7 143 459-617 2-151 (231)
82 cd03226 ABC_cobalt_CbiO_domain 100.0 4.4E-32 9.5E-37 266.0 12.1 144 460-617 1-148 (205)
83 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 8.6E-32 1.9E-36 266.5 14.1 148 459-617 1-162 (218)
84 cd03261 ABC_Org_Solvent_Resist 100.0 1E-31 2.2E-36 269.1 14.7 147 459-617 1-158 (235)
85 PRK11650 ugpC glycerol-3-phosp 100.0 8.6E-32 1.9E-36 283.9 14.8 147 458-617 3-156 (356)
86 TIGR02314 ABC_MetN D-methionin 100.0 8.6E-32 1.9E-36 281.8 14.6 148 459-617 2-162 (343)
87 PRK13650 cbiO cobalt transport 100.0 1.3E-31 2.8E-36 274.8 14.9 149 458-617 4-162 (279)
88 PRK14269 phosphate ABC transpo 100.0 1.2E-31 2.5E-36 270.5 14.4 152 458-617 2-164 (246)
89 cd03292 ABC_FtsE_transporter F 100.0 1.3E-31 2.7E-36 264.6 14.2 148 459-617 1-158 (214)
90 cd03291 ABCC_CFTR1 The CFTR su 100.0 9.2E-31 2E-35 267.7 19.0 167 431-617 15-181 (282)
91 PRK10908 cell division protein 100.0 2.9E-31 6.3E-36 263.5 14.9 148 459-617 2-159 (222)
92 cd03259 ABC_Carb_Solutes_like 100.0 1.4E-31 3.1E-36 264.0 12.5 145 459-617 1-152 (213)
93 cd03225 ABC_cobalt_CbiO_domain 100.0 2E-31 4.4E-36 262.5 13.5 147 460-617 1-156 (211)
94 cd03256 ABC_PhnC_transporter A 100.0 2.8E-31 6.1E-36 267.0 14.7 148 459-617 1-166 (241)
95 TIGR02315 ABC_phnC phosphonate 100.0 3E-31 6.6E-36 267.1 15.0 148 459-617 2-167 (243)
96 cd03266 ABC_NatA_sodium_export 100.0 3E-31 6.6E-36 262.6 14.5 147 459-617 2-158 (218)
97 PRK11629 lolD lipoprotein tran 100.0 2.9E-31 6.3E-36 265.4 14.1 149 458-617 5-167 (233)
98 COG1122 CbiO ABC-type cobalt t 100.0 2.4E-31 5.2E-36 262.6 13.2 149 458-617 3-160 (235)
99 cd03263 ABC_subfamily_A The AB 100.0 3.4E-31 7.5E-36 262.6 13.7 147 459-617 1-155 (220)
100 PRK13632 cbiO cobalt transport 100.0 5.5E-31 1.2E-35 269.2 15.2 149 458-617 7-164 (271)
101 TIGR02211 LolD_lipo_ex lipopro 100.0 5.1E-31 1.1E-35 261.5 14.5 148 459-617 2-163 (221)
102 PRK11432 fbpC ferric transport 100.0 4E-31 8.7E-36 278.1 14.5 146 458-617 6-158 (351)
103 PRK13635 cbiO cobalt transport 100.0 5.6E-31 1.2E-35 270.0 15.1 149 458-617 5-162 (279)
104 cd03219 ABC_Mj1267_LivG_branch 100.0 4.8E-31 1E-35 264.4 14.2 156 459-617 1-165 (236)
105 PRK14250 phosphate ABC transpo 100.0 9.4E-31 2E-35 263.0 16.1 149 458-617 3-153 (241)
106 cd03264 ABC_drug_resistance_li 100.0 5.4E-31 1.2E-35 259.5 13.6 145 459-617 1-152 (211)
107 cd03268 ABC_BcrA_bacitracin_re 100.0 6.4E-31 1.4E-35 258.4 14.0 145 459-617 1-148 (208)
108 PRK14242 phosphate transporter 100.0 6.6E-31 1.4E-35 266.2 14.4 152 458-617 6-171 (253)
109 cd03262 ABC_HisP_GlnQ_permease 100.0 5.7E-31 1.2E-35 259.7 13.5 151 459-617 1-157 (213)
110 cd03224 ABC_TM1139_LivF_branch 100.0 6.9E-31 1.5E-35 260.8 14.2 152 459-617 1-154 (222)
111 cd03301 ABC_MalK_N The N-termi 100.0 6.4E-31 1.4E-35 259.3 13.5 145 459-617 1-152 (213)
112 PRK13637 cbiO cobalt transport 100.0 2.2E-30 4.8E-35 266.7 17.8 150 459-617 3-166 (287)
113 PRK13636 cbiO cobalt transport 100.0 1.1E-30 2.4E-35 268.5 15.5 149 458-617 5-163 (283)
114 cd03258 ABC_MetN_methionine_tr 100.0 9.3E-31 2E-35 261.8 14.5 148 459-617 2-162 (233)
115 cd03293 ABC_NrtD_SsuB_transpor 100.0 5.4E-31 1.2E-35 261.2 12.6 143 459-617 1-153 (220)
116 cd03296 ABC_CysA_sulfate_impor 100.0 8.5E-31 1.8E-35 263.1 14.1 146 458-617 2-158 (239)
117 PRK13646 cbiO cobalt transport 100.0 1.8E-30 4E-35 267.2 16.9 153 458-617 2-167 (286)
118 PRK13652 cbiO cobalt transport 100.0 1.2E-30 2.6E-35 267.5 15.4 149 458-617 3-159 (277)
119 PRK11153 metN DL-methionine tr 100.0 8E-31 1.7E-35 276.1 14.4 148 459-617 2-162 (343)
120 cd03231 ABC_CcmA_heme_exporter 100.0 1.6E-30 3.5E-35 254.0 15.5 146 459-617 1-147 (201)
121 PRK10247 putative ABC transpor 100.0 1.4E-30 3.1E-35 258.9 15.4 149 458-617 7-159 (225)
122 TIGR03265 PhnT2 putative 2-ami 100.0 8.6E-31 1.9E-35 276.0 14.5 146 458-617 4-156 (353)
123 PRK10744 pstB phosphate transp 100.0 1.5E-30 3.3E-35 264.4 15.8 153 457-617 12-178 (260)
124 cd03295 ABC_OpuCA_Osmoprotecti 100.0 7.6E-31 1.6E-35 263.9 13.4 152 459-617 1-157 (242)
125 PRK10584 putative ABC transpor 100.0 1.2E-30 2.6E-35 260.2 14.5 149 458-617 6-168 (228)
126 cd03235 ABC_Metallic_Cations A 100.0 5.6E-31 1.2E-35 259.8 12.0 141 460-617 1-154 (213)
127 PRK13643 cbiO cobalt transport 100.0 1.4E-30 3.1E-35 268.2 15.5 149 459-617 2-166 (288)
128 PRK14235 phosphate transporter 100.0 1.5E-30 3.3E-35 265.4 15.1 154 456-617 17-185 (267)
129 PRK10575 iron-hydroxamate tran 100.0 1.5E-30 3.3E-35 265.1 15.1 148 458-617 11-169 (265)
130 COG1124 DppF ABC-type dipeptid 100.0 1.3E-30 2.7E-35 250.4 13.2 149 458-617 3-163 (252)
131 PRK11247 ssuB aliphatic sulfon 100.0 2.1E-30 4.5E-35 262.2 15.4 143 458-617 12-155 (257)
132 PRK09536 btuD corrinoid ABC tr 100.0 1.7E-30 3.6E-35 276.8 15.4 148 458-617 3-161 (402)
133 PRK13644 cbiO cobalt transport 100.0 2E-30 4.3E-35 265.4 15.2 148 459-617 2-158 (274)
134 PRK14273 phosphate ABC transpo 100.0 1.5E-30 3.3E-35 263.6 14.3 152 458-617 7-172 (254)
135 TIGR01186 proV glycine betaine 100.0 1E-30 2.2E-35 275.2 13.3 136 471-617 5-151 (363)
136 PRK13634 cbiO cobalt transport 100.0 1.5E-30 3.2E-35 268.3 14.0 150 458-617 2-167 (290)
137 PRK13640 cbiO cobalt transport 100.0 2.7E-30 5.9E-35 265.4 15.9 150 457-617 4-165 (282)
138 TIGR00972 3a0107s01c2 phosphat 100.0 1.3E-30 2.9E-35 263.0 13.3 151 459-617 2-166 (247)
139 PRK09452 potA putrescine/sperm 100.0 3E-30 6.5E-35 273.3 16.3 146 458-617 14-166 (375)
140 cd03265 ABC_DrrA DrrA is the A 100.0 2.4E-30 5.2E-35 256.5 14.5 146 459-617 1-153 (220)
141 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.1E-30 2.4E-35 266.6 12.2 146 460-617 26-182 (269)
142 PRK14259 phosphate ABC transpo 100.0 4.1E-30 8.9E-35 262.4 16.4 153 457-617 12-176 (269)
143 TIGR02982 heterocyst_DevA ABC 100.0 2.6E-30 5.6E-35 256.3 14.1 148 459-617 2-163 (220)
144 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 4.4E-30 9.6E-35 257.4 15.9 150 459-617 2-154 (236)
145 PRK11231 fecE iron-dicitrate t 100.0 3.4E-30 7.3E-35 261.2 15.1 148 458-617 2-160 (255)
146 PRK13540 cytochrome c biogenes 100.0 4.2E-30 9E-35 251.0 15.1 146 459-617 2-149 (200)
147 PRK11124 artP arginine transpo 100.0 2.7E-30 5.9E-35 259.9 14.2 152 458-617 2-163 (242)
148 PRK14236 phosphate transporter 100.0 3.6E-30 7.8E-35 263.3 15.3 153 457-617 24-190 (272)
149 PRK14267 phosphate ABC transpo 100.0 2E-30 4.3E-35 262.7 13.2 152 458-617 4-171 (253)
150 PRK14237 phosphate transporter 100.0 3.3E-30 7.2E-35 262.9 14.9 153 457-617 19-185 (267)
151 TIGR03005 ectoine_ehuA ectoine 100.0 2.8E-30 6.2E-35 261.4 14.3 147 459-617 1-168 (252)
152 PRK10851 sulfate/thiosulfate t 100.0 2.7E-30 5.9E-35 272.2 14.7 146 458-617 2-158 (353)
153 cd03218 ABC_YhbG The ABC trans 100.0 2.8E-30 6.1E-35 258.1 14.1 151 459-617 1-155 (232)
154 TIGR01189 ccmA heme ABC export 100.0 3.3E-30 7.1E-35 251.3 14.1 146 459-617 1-149 (198)
155 PRK11000 maltose/maltodextrin 100.0 3.5E-30 7.6E-35 273.5 15.4 146 458-617 3-155 (369)
156 PRK14248 phosphate ABC transpo 100.0 3.3E-30 7.1E-35 263.2 14.2 152 458-617 21-186 (268)
157 TIGR03258 PhnT 2-aminoethylpho 100.0 2.9E-30 6.3E-35 272.5 14.2 147 457-617 4-159 (362)
158 cd03246 ABCC_Protease_Secretio 100.0 4.2E-30 9E-35 245.1 14.0 117 459-617 1-118 (173)
159 PRK13633 cobalt transporter AT 100.0 3.6E-30 7.8E-35 264.4 14.5 149 458-617 4-166 (280)
160 cd03298 ABC_ThiQ_thiamine_tran 100.0 5.6E-30 1.2E-34 252.2 15.2 143 459-617 1-150 (211)
161 PRK14247 phosphate ABC transpo 100.0 2.8E-30 6E-35 261.1 13.3 152 458-617 3-168 (250)
162 cd03247 ABCC_cytochrome_bd The 100.0 2.8E-30 6E-35 247.5 12.6 119 459-617 1-120 (178)
163 PRK13642 cbiO cobalt transport 100.0 6.2E-30 1.3E-34 262.2 16.0 149 458-617 4-162 (277)
164 cd03257 ABC_NikE_OppD_transpor 100.0 9.3E-30 2E-34 253.7 16.7 152 459-617 2-167 (228)
165 PRK09493 glnQ glutamine ABC tr 100.0 4.4E-30 9.5E-35 258.1 14.3 151 459-617 2-158 (240)
166 PRK14249 phosphate ABC transpo 100.0 6.1E-30 1.3E-34 258.8 15.3 152 458-617 4-169 (251)
167 TIGR03410 urea_trans_UrtE urea 100.0 3.1E-30 6.7E-35 257.5 12.9 148 459-617 1-153 (230)
168 PRK14240 phosphate transporter 100.0 4.1E-30 8.9E-35 259.9 13.9 153 457-617 2-168 (250)
169 PRK14254 phosphate ABC transpo 100.0 7.6E-30 1.6E-34 262.3 16.0 153 457-617 38-202 (285)
170 PRK13538 cytochrome c biogenes 100.0 6E-30 1.3E-34 250.6 14.5 146 459-617 2-151 (204)
171 cd03269 ABC_putative_ATPase Th 100.0 2.6E-30 5.6E-35 254.4 11.9 143 459-617 1-150 (210)
172 PRK13651 cobalt transporter AT 100.0 5.8E-30 1.3E-34 265.1 15.0 150 458-617 2-187 (305)
173 TIGR03608 L_ocin_972_ABC putat 100.0 4.2E-30 9E-35 252.2 13.1 145 461-617 1-156 (206)
174 PRK11607 potG putrescine trans 100.0 5.9E-30 1.3E-34 271.5 15.2 146 458-617 19-171 (377)
175 PRK11831 putative ABC transpor 100.0 6.1E-30 1.3E-34 261.2 14.7 148 458-617 7-165 (269)
176 COG1127 Ttg2A ABC-type transpo 100.0 5.6E-30 1.2E-34 244.6 13.3 149 457-617 7-167 (263)
177 PRK14251 phosphate ABC transpo 100.0 3.8E-30 8.3E-35 260.3 12.9 152 458-617 4-169 (251)
178 TIGR01277 thiQ thiamine ABC tr 100.0 9.9E-30 2.2E-34 250.8 15.3 143 459-617 1-150 (213)
179 PRK13548 hmuV hemin importer A 100.0 1.2E-29 2.7E-34 257.4 16.3 148 458-617 2-162 (258)
180 PRK10895 lipopolysaccharide AB 100.0 9.5E-30 2.1E-34 255.8 15.2 152 458-617 3-159 (241)
181 PRK14271 phosphate ABC transpo 100.0 1.9E-29 4.2E-34 258.2 17.5 152 458-617 21-185 (276)
182 PRK14266 phosphate ABC transpo 100.0 7.3E-30 1.6E-34 258.1 14.1 152 458-617 3-168 (250)
183 PRK14261 phosphate ABC transpo 100.0 8.4E-30 1.8E-34 258.1 14.5 152 458-617 6-171 (253)
184 PRK13649 cbiO cobalt transport 100.0 1.7E-29 3.6E-34 259.7 16.8 153 458-617 2-167 (280)
185 COG4619 ABC-type uncharacteriz 100.0 2.2E-30 4.7E-35 233.2 8.9 140 468-617 11-155 (223)
186 PRK14274 phosphate ABC transpo 100.0 1E-29 2.3E-34 258.2 15.1 152 458-617 12-177 (259)
187 PRK14243 phosphate transporter 100.0 1.1E-29 2.3E-34 258.7 15.1 152 458-617 10-173 (264)
188 PRK10253 iron-enterobactin tra 100.0 1E-29 2.2E-34 259.1 14.9 149 457-617 6-165 (265)
189 PRK14260 phosphate ABC transpo 100.0 7E-30 1.5E-34 259.5 13.6 152 458-617 7-172 (259)
190 PRK11300 livG leucine/isoleuci 100.0 1.5E-29 3.3E-34 256.5 16.0 157 458-617 5-175 (255)
191 TIGR01166 cbiO cobalt transpor 100.0 7E-30 1.5E-34 247.3 12.8 139 468-617 1-149 (190)
192 cd03234 ABCG_White The White s 100.0 6E-30 1.3E-34 254.7 12.7 154 459-617 4-165 (226)
193 PRK11614 livF leucine/isoleuci 100.0 1.1E-29 2.5E-34 254.6 14.7 153 458-617 5-159 (237)
194 PRK13639 cbiO cobalt transport 100.0 7E-30 1.5E-34 261.5 13.3 148 459-617 2-159 (275)
195 cd03300 ABC_PotA_N PotA is an 100.0 5.9E-30 1.3E-34 255.7 12.5 145 459-617 1-152 (232)
196 PRK14239 phosphate transporter 100.0 1.1E-29 2.3E-34 257.3 14.4 152 458-617 5-170 (252)
197 PRK13648 cbiO cobalt transport 100.0 1.3E-29 2.8E-34 258.9 15.1 149 458-617 7-164 (269)
198 TIGR03873 F420-0_ABC_ATP propo 100.0 1.5E-29 3.3E-34 256.6 15.3 147 459-617 2-159 (256)
199 COG1118 CysA ABC-type sulfate/ 100.0 4.9E-30 1.1E-34 252.6 11.2 146 458-617 2-159 (345)
200 PRK14262 phosphate ABC transpo 100.0 8.1E-30 1.8E-34 257.7 13.2 152 458-617 3-168 (250)
201 cd03229 ABC_Class3 This class 100.0 1.3E-29 2.7E-34 242.9 13.7 119 459-617 1-122 (178)
202 PRK11264 putative amino-acid A 100.0 2.4E-29 5.2E-34 254.3 16.4 152 458-617 3-166 (250)
203 cd03230 ABC_DR_subfamily_A Thi 100.0 1.4E-29 3E-34 241.5 13.8 116 459-617 1-117 (173)
204 PRK13638 cbiO cobalt transport 100.0 1.1E-29 2.5E-34 259.6 14.0 147 459-617 2-158 (271)
205 PRK14256 phosphate ABC transpo 100.0 1.6E-29 3.5E-34 255.9 14.9 153 457-617 3-170 (252)
206 PRK13539 cytochrome c biogenes 100.0 1.8E-29 3.8E-34 247.8 14.7 145 458-617 2-149 (207)
207 PRK14264 phosphate ABC transpo 100.0 2E-29 4.3E-34 261.7 15.9 153 457-617 44-222 (305)
208 PRK14245 phosphate ABC transpo 100.0 1E-29 2.2E-34 257.0 13.2 152 458-617 3-168 (250)
209 PRK14244 phosphate ABC transpo 100.0 6E-30 1.3E-34 258.8 11.4 151 459-617 6-171 (251)
210 cd03223 ABCD_peroxisomal_ALDP 100.0 1.3E-29 2.9E-34 239.7 13.1 113 459-617 1-113 (166)
211 PRK14238 phosphate transporter 100.0 2.8E-29 6.2E-34 256.5 16.3 152 458-617 24-189 (271)
212 PRK10619 histidine/lysine/argi 100.0 1.8E-29 4E-34 256.1 14.7 150 457-617 4-174 (257)
213 PRK10771 thiQ thiamine transpo 100.0 2.7E-29 5.8E-34 251.1 15.5 143 459-617 2-151 (232)
214 PRK14268 phosphate ABC transpo 100.0 1.4E-29 3.1E-34 257.1 13.7 152 458-617 12-176 (258)
215 PRK13645 cbiO cobalt transport 100.0 2.9E-29 6.3E-34 258.9 16.2 155 457-617 5-172 (289)
216 TIGR03411 urea_trans_UrtD urea 100.0 1.7E-29 3.6E-34 254.2 14.0 157 458-617 2-165 (242)
217 PRK10070 glycine betaine trans 100.0 1.5E-29 3.2E-34 269.4 14.3 134 473-617 42-186 (400)
218 PRK14253 phosphate ABC transpo 100.0 1.6E-29 3.5E-34 255.5 13.7 152 458-617 3-167 (249)
219 PRK14252 phosphate ABC transpo 100.0 2.4E-29 5.2E-34 256.4 15.1 154 456-617 14-183 (265)
220 PRK14241 phosphate transporter 100.0 2E-29 4.3E-34 256.1 14.2 152 458-617 4-170 (258)
221 TIGR00968 3a0106s01 sulfate AB 100.0 2.9E-29 6.3E-34 251.6 15.1 145 459-617 1-152 (237)
222 PRK13641 cbiO cobalt transport 100.0 3.9E-29 8.5E-34 257.5 16.3 153 458-617 2-167 (287)
223 PRK14265 phosphate ABC transpo 100.0 3.8E-29 8.2E-34 255.9 16.0 154 456-617 18-183 (274)
224 PRK15079 oligopeptide ABC tran 100.0 2.5E-29 5.4E-34 262.9 14.9 150 458-617 8-183 (331)
225 PRK14270 phosphate ABC transpo 100.0 2.6E-29 5.5E-34 254.2 14.6 152 458-617 4-169 (251)
226 PRK11248 tauB taurine transpor 100.0 2.6E-29 5.7E-34 254.4 14.4 142 459-617 2-150 (255)
227 cd03233 ABC_PDR_domain1 The pl 100.0 2.3E-29 5E-34 245.9 13.1 131 458-617 3-140 (202)
228 TIGR02769 nickel_nikE nickel i 100.0 2.6E-29 5.5E-34 256.2 13.7 149 458-617 2-172 (265)
229 cd03299 ABC_ModC_like Archeal 100.0 3.6E-29 7.9E-34 250.5 14.4 144 459-617 1-151 (235)
230 cd03228 ABCC_MRP_Like The MRP 100.0 3.3E-29 7.2E-34 238.4 13.4 117 459-617 1-118 (171)
231 TIGR01288 nodI ATP-binding ABC 100.0 3.1E-29 6.6E-34 260.3 14.2 151 458-617 4-157 (303)
232 PRK14258 phosphate ABC transpo 100.0 3.5E-29 7.6E-34 254.6 14.1 152 458-617 7-172 (261)
233 PRK14255 phosphate ABC transpo 100.0 3.4E-29 7.4E-34 253.5 13.5 152 458-617 5-170 (252)
234 PRK14275 phosphate ABC transpo 100.0 5.2E-29 1.1E-33 256.3 14.8 153 457-617 38-204 (286)
235 PRK13537 nodulation ABC transp 100.0 4.7E-29 1E-33 258.7 14.5 148 457-617 6-160 (306)
236 PRK14263 phosphate ABC transpo 100.0 5.6E-29 1.2E-33 252.8 14.1 152 458-617 8-171 (261)
237 PRK13543 cytochrome c biogenes 100.0 7.5E-29 1.6E-33 244.7 14.5 145 458-617 11-159 (214)
238 PRK11144 modC molybdate transp 100.0 7E-29 1.5E-33 262.2 14.8 144 459-617 2-150 (352)
239 TIGR01978 sufC FeS assembly AT 100.0 6.9E-29 1.5E-33 249.9 13.8 148 459-617 1-166 (243)
240 PRK09984 phosphonate/organopho 100.0 1E-28 2.2E-33 251.4 15.1 148 458-617 4-174 (262)
241 COG0410 LivF ABC-type branched 100.0 9.1E-29 2E-33 236.0 13.5 154 458-617 3-158 (237)
242 PRK13541 cytochrome c biogenes 100.0 8.2E-29 1.8E-33 240.9 13.5 142 459-617 2-145 (195)
243 TIGR03522 GldA_ABC_ATP gliding 100.0 8.3E-29 1.8E-33 256.7 14.0 146 459-617 3-155 (301)
244 PF00005 ABC_tran: ABC transpo 100.0 2.6E-29 5.6E-34 230.0 8.9 129 475-617 1-130 (137)
245 PRK13547 hmuV hemin importer A 100.0 1.3E-28 2.8E-33 251.1 15.0 147 459-617 2-176 (272)
246 TIGR02324 CP_lyasePhnL phospho 100.0 1.2E-28 2.6E-33 245.0 13.7 149 459-617 2-171 (224)
247 PRK15056 manganese/iron transp 100.0 1.4E-28 3E-33 251.7 14.3 146 458-617 6-164 (272)
248 PRK14272 phosphate ABC transpo 100.0 1.3E-28 2.7E-33 249.4 13.8 152 458-617 4-170 (252)
249 cd03213 ABCG_EPDR ABCG transpo 100.0 8.9E-29 1.9E-33 240.3 12.2 123 458-617 3-133 (194)
250 PRK15112 antimicrobial peptide 100.0 1.8E-28 3.8E-33 250.2 14.9 149 458-617 4-171 (267)
251 TIGR03740 galliderm_ABC gallid 100.0 1.6E-28 3.5E-33 244.0 13.9 143 459-617 1-146 (223)
252 cd03215 ABC_Carb_Monos_II This 100.0 1.6E-28 3.4E-33 236.1 13.1 118 458-617 4-126 (182)
253 PRK10419 nikE nickel transport 100.0 1.9E-28 4.2E-33 249.9 14.3 153 458-617 3-173 (268)
254 PRK11308 dppF dipeptide transp 100.0 3.2E-28 6.9E-33 254.3 15.4 150 458-617 5-176 (327)
255 PRK14246 phosphate ABC transpo 100.0 1.5E-28 3.1E-33 249.2 12.4 152 458-617 10-175 (257)
256 PRK11701 phnK phosphonate C-P 100.0 2.9E-28 6.2E-33 247.5 14.5 153 458-617 6-173 (258)
257 PRK13536 nodulation factor exp 100.0 2E-28 4.3E-33 256.8 13.6 152 457-617 40-194 (340)
258 cd03232 ABC_PDR_domain2 The pl 100.0 1.7E-28 3.7E-33 238.0 11.9 122 458-617 3-130 (192)
259 PRK10418 nikD nickel transport 100.0 2.8E-28 6E-33 247.0 13.7 148 458-617 4-162 (254)
260 TIGR02142 modC_ABC molybdenum 100.0 4E-28 8.6E-33 256.9 14.6 141 463-617 4-153 (354)
261 TIGR03415 ABC_choXWV_ATP choli 100.0 2.7E-28 5.9E-33 257.9 13.1 136 471-617 36-186 (382)
262 PRK09473 oppD oligopeptide tra 100.0 8.5E-28 1.8E-32 251.5 16.6 156 458-617 12-183 (330)
263 PRK11022 dppD dipeptide transp 100.0 3.2E-28 7E-33 254.4 13.3 152 458-617 3-175 (326)
264 TIGR01188 drrA daunorubicin re 100.0 2.8E-28 6.1E-33 253.0 12.0 138 467-617 2-146 (302)
265 KOG0064 Peroxisomal long-chain 100.0 3.3E-24 7.1E-29 223.3 41.7 288 316-616 300-633 (728)
266 cd03297 ABC_ModC_molybdenum_tr 100.0 8.3E-28 1.8E-32 237.3 14.0 147 459-617 2-153 (214)
267 PRK09544 znuC high-affinity zi 99.9 1.4E-27 3E-32 241.0 15.2 136 458-617 4-142 (251)
268 COG4181 Predicted ABC-type tra 99.9 5E-28 1.1E-32 218.7 10.2 149 458-617 6-168 (228)
269 TIGR02323 CP_lyasePhnK phospho 99.9 1E-27 2.2E-32 242.9 13.7 152 458-617 3-170 (253)
270 COG1131 CcmA ABC-type multidru 99.9 1.4E-27 3E-32 245.5 14.3 148 458-617 4-158 (293)
271 PRK09580 sufC cysteine desulfu 99.9 1.2E-27 2.6E-32 241.6 13.5 156 459-617 2-167 (248)
272 PRK15093 antimicrobial peptide 99.9 1.4E-27 3.1E-32 250.3 14.3 152 458-617 3-180 (330)
273 CHL00131 ycf16 sulfate ABC tra 99.9 1.8E-27 3.9E-32 240.9 13.9 149 458-617 7-173 (252)
274 cd03214 ABC_Iron-Siderophores_ 99.9 1.3E-27 2.7E-32 229.5 11.1 119 460-617 1-119 (180)
275 PRK11288 araG L-arabinose tran 99.9 3E-27 6.5E-32 262.4 15.5 152 458-617 4-162 (501)
276 cd03217 ABC_FeS_Assembly ABC-t 99.9 2.8E-27 6.1E-32 230.9 13.3 122 459-617 1-126 (200)
277 PRK15439 autoinducer 2 ABC tra 99.9 3.5E-27 7.6E-32 262.1 15.6 148 458-617 11-162 (510)
278 PRK13549 xylose transporter AT 99.9 3.8E-27 8.3E-32 261.8 15.2 152 458-617 5-165 (506)
279 COG1137 YhbG ABC-type (unclass 99.9 2.7E-28 5.8E-33 226.2 4.7 156 458-617 4-161 (243)
280 PRK09700 D-allose transporter 99.9 3E-27 6.4E-32 263.1 12.8 152 458-617 5-167 (510)
281 cd03216 ABC_Carb_Monos_I This 99.9 8.3E-27 1.8E-31 220.0 12.9 103 459-617 1-104 (163)
282 PRK10762 D-ribose transporter 99.9 9.8E-27 2.1E-31 258.2 15.2 152 458-617 4-163 (501)
283 PRK10982 galactose/methyl gala 99.9 7.5E-27 1.6E-31 258.6 14.2 149 461-617 1-156 (491)
284 PRK03695 vitamin B12-transport 99.9 1.4E-26 3E-31 233.6 13.9 142 459-617 1-155 (248)
285 cd03267 ABC_NatA_like Similar 99.9 1.2E-26 2.5E-31 232.5 13.1 134 472-617 34-175 (236)
286 PRK10261 glutathione transport 99.9 2.2E-26 4.7E-31 261.0 15.1 149 458-617 313-485 (623)
287 PRK10535 macrolide transporter 99.9 2.1E-26 4.6E-31 262.0 14.8 153 458-617 4-166 (648)
288 TIGR01184 ntrCD nitrate transp 99.9 2.9E-26 6.4E-31 228.7 13.7 127 475-617 1-136 (230)
289 COG4525 TauB ABC-type taurine 99.9 1.2E-26 2.6E-31 214.1 9.5 144 458-617 3-154 (259)
290 TIGR00955 3a01204 The Eye Pigm 99.9 9.3E-27 2E-31 263.8 10.0 151 458-617 17-188 (617)
291 TIGR02633 xylG D-xylose ABC tr 99.9 4.9E-26 1.1E-30 252.8 15.6 151 459-617 2-163 (500)
292 PRK10938 putative molybdenum t 99.9 3.1E-26 6.8E-31 253.7 13.9 146 458-617 3-157 (490)
293 PLN03211 ABC transporter G-25; 99.9 9.3E-26 2E-30 255.8 16.3 138 471-617 80-228 (659)
294 PRK15134 microcin C ABC transp 99.9 5.2E-26 1.1E-30 254.1 12.7 149 458-617 275-447 (529)
295 TIGR02770 nickel_nikD nickel i 99.9 4.7E-26 1E-30 227.3 10.4 134 474-617 1-147 (230)
296 PRK10261 glutathione transport 99.9 9.3E-26 2E-30 255.9 14.1 152 458-617 12-190 (623)
297 COG4175 ProV ABC-type proline/ 99.9 6.1E-26 1.3E-30 223.9 10.4 133 474-617 43-186 (386)
298 COG4148 ModC ABC-type molybdat 99.9 6.5E-26 1.4E-30 220.1 10.2 130 477-617 16-150 (352)
299 TIGR03269 met_CoM_red_A2 methy 99.9 7.5E-26 1.6E-30 252.4 12.1 154 458-617 279-449 (520)
300 PRK15134 microcin C ABC transp 99.9 1.1E-25 2.4E-30 251.5 13.4 152 458-617 5-178 (529)
301 COG4555 NatA ABC-type Na+ tran 99.9 3.6E-26 7.9E-31 212.3 7.8 147 459-617 2-155 (245)
302 PRK09700 D-allose transporter 99.9 7.7E-26 1.7E-30 251.7 11.7 150 458-617 265-431 (510)
303 PRK13549 xylose transporter AT 99.9 8E-26 1.7E-30 251.3 11.8 153 458-617 259-427 (506)
304 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 1.1E-25 2.5E-30 223.5 11.2 136 459-617 23-164 (224)
305 COG1123 ATPase components of v 99.9 1.4E-25 3.1E-30 240.6 12.7 150 457-617 279-451 (539)
306 TIGR00956 3a01205 Pleiotropic 99.9 2.2E-25 4.9E-30 271.0 15.7 149 458-617 759-924 (1394)
307 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 3.5E-25 7.7E-30 248.4 15.9 146 458-617 4-183 (552)
308 cd03237 ABC_RNaseL_inhibitor_d 99.9 1.8E-25 3.8E-30 224.8 11.9 129 466-617 1-137 (246)
309 TIGR03269 met_CoM_red_A2 methy 99.9 1.6E-25 3.4E-30 249.8 12.7 147 459-617 1-190 (520)
310 COG4608 AppF ABC-type oligopep 99.9 1.4E-25 3.1E-30 220.4 10.3 119 458-617 4-131 (268)
311 TIGR02633 xylG D-xylose ABC tr 99.9 3.1E-25 6.7E-30 246.4 13.6 153 458-617 257-425 (500)
312 COG0411 LivG ABC-type branched 99.9 9.3E-26 2E-30 217.1 8.0 153 459-617 5-171 (250)
313 cd03236 ABC_RNaseL_inhibitor_d 99.9 1.4E-25 3E-30 226.5 9.6 144 462-617 4-161 (255)
314 PRK11819 putative ABC transpor 99.9 5.1E-25 1.1E-29 247.1 15.2 146 458-617 6-185 (556)
315 TIGR03771 anch_rpt_ABC anchore 99.9 2.4E-25 5.3E-30 221.0 10.7 122 480-617 1-135 (223)
316 TIGR01257 rim_protein retinal- 99.9 4.6E-25 1E-29 268.9 15.1 149 457-617 927-1083(2272)
317 COG4559 ABC-type hemin transpo 99.9 7.8E-25 1.7E-29 205.0 12.4 143 459-613 2-153 (259)
318 PRK15064 ABC transporter ATP-b 99.9 7.9E-25 1.7E-29 244.7 13.0 145 459-617 2-177 (530)
319 COG1129 MglA ABC-type sugar tr 99.9 1.9E-24 4.2E-29 230.5 14.4 150 458-617 8-167 (500)
320 COG4136 ABC-type uncharacteriz 99.9 1.2E-24 2.6E-29 192.6 10.5 146 458-617 2-156 (213)
321 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 1.7E-24 3.6E-29 199.9 11.5 92 459-617 1-92 (144)
322 PRK10762 D-ribose transporter 99.9 1.8E-24 3.9E-29 240.2 13.6 147 458-617 257-417 (501)
323 COG3845 ABC-type uncharacteriz 99.9 2.1E-24 4.6E-29 225.5 13.0 157 458-617 4-162 (501)
324 PRK15064 ABC transporter ATP-b 99.9 2.7E-24 5.8E-29 240.4 14.7 137 458-617 319-460 (530)
325 COG4172 ABC-type uncharacteriz 99.9 3.9E-24 8.4E-29 217.0 14.2 150 457-617 275-448 (534)
326 TIGR01257 rim_protein retinal- 99.9 2.8E-24 6E-29 262.2 15.6 149 457-617 1936-2092(2272)
327 PRK10938 putative molybdenum t 99.9 1.4E-24 3.1E-29 240.5 11.7 150 457-617 259-423 (490)
328 PRK11288 araG L-arabinose tran 99.9 1E-24 2.3E-29 242.0 10.6 148 458-617 257-418 (501)
329 PRK13545 tagH teichoic acids e 99.9 4.8E-24 1E-28 229.8 15.2 136 458-617 21-165 (549)
330 PRK13546 teichoic acids export 99.9 4.6E-24 9.9E-29 216.7 12.8 122 472-617 37-165 (264)
331 COG0444 DppD ABC-type dipeptid 99.9 8.2E-24 1.8E-28 212.3 11.6 151 459-617 2-175 (316)
332 COG1123 ATPase components of v 99.9 8.1E-24 1.7E-28 227.2 12.3 151 458-617 5-176 (539)
333 COG4167 SapF ABC-type antimicr 99.9 3.9E-24 8.4E-29 195.3 7.9 148 459-617 5-171 (267)
334 cd00267 ABC_ATPase ABC (ATP-bi 99.9 1.6E-23 3.4E-28 196.5 12.3 102 460-617 1-102 (157)
335 COG1119 ModF ABC-type molybden 99.9 1.9E-23 4.1E-28 201.1 12.6 149 457-617 30-193 (257)
336 PRK11819 putative ABC transpor 99.9 1.7E-23 3.7E-28 234.9 14.4 138 458-617 324-467 (556)
337 PLN03073 ABC transporter F fam 99.9 1.6E-23 3.6E-28 238.8 14.1 139 457-617 507-649 (718)
338 PRK15439 autoinducer 2 ABC tra 99.9 1.5E-23 3.2E-28 233.1 13.4 147 458-617 268-425 (510)
339 PRK15177 Vi polysaccharide exp 99.9 8.8E-24 1.9E-28 208.2 10.0 121 474-617 2-126 (213)
340 PLN03140 ABC transporter G fam 99.9 2.3E-23 4.9E-28 252.8 15.7 151 457-617 866-1041(1470)
341 PRK10982 galactose/methyl gala 99.9 2.7E-23 5.9E-28 230.2 14.3 150 458-617 250-413 (491)
342 PF00664 ABC_membrane: ABC tra 99.9 1.1E-19 2.3E-24 183.2 39.0 273 128-413 2-275 (275)
343 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 3.1E-23 6.7E-28 232.7 14.2 137 458-617 322-465 (552)
344 PRK11147 ABC transporter ATPas 99.9 3.3E-23 7.1E-28 235.8 14.3 138 458-617 319-462 (635)
345 COG1101 PhnK ABC-type uncharac 99.9 1.4E-23 2.9E-28 197.1 9.1 146 470-617 17-170 (263)
346 PRK13409 putative ATPase RIL; 99.9 3.4E-23 7.4E-28 232.1 13.7 134 458-617 340-475 (590)
347 TIGR01187 potA spermidine/putr 99.9 2.2E-23 4.7E-28 218.2 8.5 115 490-617 1-122 (325)
348 cd03222 ABC_RNaseL_inhibitor T 99.9 6.1E-23 1.3E-27 195.1 10.2 90 462-617 4-93 (177)
349 PRK10636 putative ABC transpor 99.9 3.5E-22 7.5E-27 227.0 17.8 138 458-617 312-452 (638)
350 COG4604 CeuD ABC-type enteroch 99.9 2.3E-23 4.9E-28 192.9 6.1 145 459-615 2-155 (252)
351 COG4598 HisP ABC-type histidin 99.9 6.7E-23 1.5E-27 186.8 7.7 148 458-617 6-174 (256)
352 COG4161 ArtP ABC-type arginine 99.9 1.1E-22 2.5E-27 182.2 9.0 148 458-617 2-163 (242)
353 TIGR00956 3a01205 Pleiotropic 99.9 2.2E-22 4.8E-27 244.9 11.1 143 472-617 74-231 (1394)
354 PRK10636 putative ABC transpor 99.9 6.5E-22 1.4E-26 224.8 13.8 145 459-617 2-171 (638)
355 COG4133 CcmA ABC-type transpor 99.9 2.5E-22 5.5E-27 185.3 7.8 145 459-616 3-151 (209)
356 PRK13409 putative ATPase RIL; 99.9 1.6E-22 3.4E-27 226.7 7.0 141 462-617 77-234 (590)
357 COG0488 Uup ATPase components 99.9 2.2E-21 4.8E-26 212.3 13.8 145 458-617 3-175 (530)
358 PLN03140 ABC transporter G fam 99.8 6.8E-22 1.5E-26 240.0 7.9 143 472-617 178-358 (1470)
359 PRK11147 ABC transporter ATPas 99.8 9.1E-21 2E-25 215.8 14.7 144 458-617 3-178 (635)
360 KOG0061 Transporter, ABC super 99.8 8.6E-21 1.9E-25 213.2 12.1 153 457-617 24-192 (613)
361 cd03238 ABC_UvrA The excision 99.8 1.1E-20 2.3E-25 179.6 10.3 103 471-617 7-111 (176)
362 COG4172 ABC-type uncharacteriz 99.8 1.2E-20 2.6E-25 191.7 9.4 152 458-617 6-179 (534)
363 COG0396 sufC Cysteine desulfur 99.8 6.2E-20 1.3E-24 174.9 12.4 150 458-616 3-165 (251)
364 COG0488 Uup ATPase components 99.8 3.1E-19 6.7E-24 195.5 17.2 140 457-617 320-461 (530)
365 PLN03073 ABC transporter F fam 99.8 3.1E-20 6.7E-25 212.0 9.6 158 457-617 176-366 (718)
366 COG4674 Uncharacterized ABC-ty 99.8 6.7E-20 1.4E-24 169.7 6.7 148 458-617 5-169 (249)
367 COG4152 ABC-type uncharacteriz 99.8 1.5E-18 3.2E-23 166.3 8.9 148 458-617 2-152 (300)
368 COG1134 TagH ABC-type polysacc 99.7 2.6E-18 5.7E-23 166.0 8.9 124 472-617 40-169 (249)
369 COG4778 PhnL ABC-type phosphon 99.7 3.9E-18 8.5E-23 154.5 6.2 147 458-617 4-174 (235)
370 cd00820 PEPCK_HprK Phosphoenol 99.7 4.3E-18 9.3E-23 146.3 6.0 76 472-555 2-77 (107)
371 COG4107 PhnK ABC-type phosphon 99.7 2.6E-17 5.6E-22 149.7 9.5 150 458-616 6-172 (258)
372 COG4586 ABC-type uncharacteriz 99.7 1.1E-17 2.3E-22 162.9 7.2 137 473-617 38-178 (325)
373 cd03278 ABC_SMC_barmotin Barmo 99.7 9.4E-18 2E-22 163.0 6.0 113 476-617 14-139 (197)
374 cd03272 ABC_SMC3_euk Eukaryoti 99.7 1.9E-17 4.1E-22 166.7 5.0 141 458-617 3-184 (243)
375 KOG0927 Predicted transporter 99.7 5.8E-17 1.3E-21 170.8 6.3 140 457-617 388-531 (614)
376 cd03279 ABC_sbcCD SbcCD and ot 99.6 6.1E-17 1.3E-21 159.6 4.1 134 458-613 5-141 (213)
377 KOG0059 Lipid exporter ABCA1 a 99.6 3E-16 6.6E-21 184.0 10.2 150 457-617 563-720 (885)
378 cd03270 ABC_UvrA_I The excisio 99.6 2.5E-16 5.4E-21 156.6 7.7 133 470-615 6-157 (226)
379 cd03271 ABC_UvrA_II The excisi 99.6 2.6E-16 5.5E-21 158.6 4.7 134 473-617 9-194 (261)
380 COG3845 ABC-type uncharacteriz 99.6 6.7E-15 1.4E-19 154.7 14.7 152 457-617 256-425 (501)
381 KOG0065 Pleiotropic drug resis 99.5 4E-15 8.8E-20 171.6 6.3 135 471-615 803-949 (1391)
382 COG4138 BtuD ABC-type cobalami 99.5 2.3E-15 5E-20 137.2 2.7 137 459-612 4-142 (248)
383 cd03240 ABC_Rad50 The catalyti 99.5 9.8E-15 2.1E-19 142.7 5.7 112 478-617 16-143 (204)
384 cd03273 ABC_SMC2_euk Eukaryoti 99.5 5.2E-15 1.1E-19 149.7 3.7 132 485-617 25-192 (251)
385 COG1129 MglA ABC-type sugar tr 99.5 6E-14 1.3E-18 150.5 11.9 154 458-617 263-423 (500)
386 KOG0066 eIF2-interacting prote 99.5 2.4E-14 5.2E-19 146.8 8.1 139 456-617 584-726 (807)
387 cd03274 ABC_SMC4_euk Eukaryoti 99.5 6.5E-15 1.4E-19 144.8 1.0 133 458-617 5-153 (212)
388 KOG0062 ATPase component of AB 99.4 1.4E-13 2.9E-18 144.8 5.8 138 456-617 78-220 (582)
389 COG1245 Predicted ATPase, RNas 99.4 6.3E-13 1.4E-17 137.8 8.9 130 463-617 340-477 (591)
390 KOG2355 Predicted ABC-type tra 99.4 1.4E-12 3.1E-17 122.1 9.2 146 457-616 12-168 (291)
391 PRK00635 excinuclease ABC subu 99.4 1.8E-12 4E-17 157.2 10.5 146 458-617 600-834 (1809)
392 KOG0927 Predicted transporter 99.3 2.8E-12 6.1E-17 135.8 9.8 154 457-617 74-243 (614)
393 cd03275 ABC_SMC1_euk Eukaryoti 99.3 2.9E-13 6.3E-18 136.5 2.0 132 486-617 23-181 (247)
394 PRK00349 uvrA excinuclease ABC 99.3 1.7E-12 3.7E-17 151.2 7.7 43 458-506 614-656 (943)
395 KOG0062 ATPase component of AB 99.3 4.1E-12 8.9E-17 133.8 8.4 140 456-617 360-504 (582)
396 cd01128 rho_factor Transcripti 99.3 8.3E-12 1.8E-16 125.0 8.1 129 480-617 11-159 (249)
397 KOG0065 Pleiotropic drug resis 99.3 3.7E-12 8E-17 147.5 5.9 140 473-617 129-282 (1391)
398 COG2401 ABC-type ATPase fused 99.3 1.2E-11 2.5E-16 127.0 8.3 123 473-617 397-529 (593)
399 cd03276 ABC_SMC6_euk Eukaryoti 99.2 2E-11 4.4E-16 118.8 6.8 118 476-617 13-135 (198)
400 TIGR00630 uvra excinuclease AB 99.2 1.2E-10 2.7E-15 135.6 11.3 40 458-503 612-651 (924)
401 TIGR03238 dnd_assoc_3 dnd syst 99.1 4.7E-11 1E-15 127.1 4.6 67 473-542 20-87 (504)
402 TIGR00767 rho transcription te 99.0 1E-09 2.3E-14 115.2 9.7 83 425-512 102-195 (415)
403 PRK11098 microcin B17 transpor 99.0 1.1E-05 2.3E-10 86.1 39.7 96 341-440 301-396 (409)
404 COG4170 SapD ABC-type antimicr 99.0 5E-10 1.1E-14 105.4 5.6 148 460-617 5-180 (330)
405 cd03239 ABC_SMC_head The struc 99.0 7.2E-10 1.6E-14 105.9 5.8 34 578-617 83-120 (178)
406 PRK12369 putative transporter; 98.9 2.9E-05 6.2E-10 81.1 38.5 64 376-439 258-321 (326)
407 PRK00300 gmk guanylate kinase; 98.9 1.3E-09 2.7E-14 106.8 3.4 78 483-569 3-92 (205)
408 COG1245 Predicted ATPase, RNas 98.8 2.9E-09 6.3E-14 111.0 5.3 140 463-617 79-235 (591)
409 cd03280 ABC_MutS2 MutS2 homolo 98.8 3.1E-09 6.6E-14 103.7 4.8 38 475-512 17-63 (200)
410 PF06472 ABC_membrane_2: ABC t 98.8 5.5E-05 1.2E-09 77.8 36.5 223 132-370 34-260 (281)
411 PRK06002 fliI flagellum-specif 98.8 8.1E-09 1.7E-13 110.7 8.3 97 457-554 138-250 (450)
412 KOG0063 RNAse L inhibitor, ABC 98.8 1E-08 2.2E-13 106.1 8.5 129 466-616 343-477 (592)
413 cd03242 ABC_RecF RecF is a rec 98.8 2.6E-08 5.6E-13 101.9 9.4 140 476-617 13-214 (270)
414 PRK10733 hflB ATP-dependent me 98.7 2.5E-10 5.3E-15 130.0 -6.7 163 316-510 40-210 (644)
415 cd03277 ABC_SMC5_euk Eukaryoti 98.7 1.9E-08 4.1E-13 99.0 5.5 127 476-617 15-152 (213)
416 TIGR02858 spore_III_AA stage I 98.7 1.9E-08 4.1E-13 102.1 5.3 67 486-552 112-179 (270)
417 cd03241 ABC_RecN RecN ATPase i 98.7 4E-08 8.6E-13 100.9 7.5 31 475-506 12-42 (276)
418 cd03285 ABC_MSH2_euk MutS2 hom 98.6 2.9E-08 6.3E-13 98.3 5.2 95 471-617 16-113 (222)
419 cd01130 VirB11-like_ATPase Typ 98.6 5.7E-08 1.2E-12 93.7 6.7 79 474-555 14-95 (186)
420 PRK01889 GTPase RsgA; Reviewed 98.6 2E-08 4.3E-13 106.4 3.7 81 475-558 185-265 (356)
421 TIGR00606 rad50 rad50. This fa 98.6 4.1E-08 9E-13 120.8 6.0 69 544-617 1153-1227(1311)
422 PRK07196 fliI flagellum-specif 98.6 5E-08 1.1E-12 104.6 4.8 82 472-554 143-234 (434)
423 cd03283 ABC_MutS-like MutS-lik 98.5 1E-07 2.3E-12 92.8 6.1 119 471-612 13-136 (199)
424 COG0178 UvrA Excinuclease ATPa 98.5 3E-07 6.5E-12 102.4 10.2 29 474-502 616-644 (935)
425 PRK07721 fliI flagellum-specif 98.5 1.1E-07 2.4E-12 102.6 6.2 83 471-554 145-244 (438)
426 cd03227 ABC_Class2 ABC-type Cl 98.5 1.4E-07 3E-12 88.9 6.0 39 479-517 15-53 (162)
427 PRK00635 excinuclease ABC subu 98.5 5.5E-07 1.2E-11 110.5 10.6 55 473-527 1504-1567(1809)
428 KOG0066 eIF2-interacting prote 98.4 6.7E-07 1.5E-11 92.8 8.8 137 458-617 264-434 (807)
429 TIGR02524 dot_icm_DotB Dot/Icm 98.4 3.9E-07 8.4E-12 96.4 7.1 87 483-571 132-233 (358)
430 PRK08149 ATP synthase SpaL; Va 98.4 2.5E-07 5.3E-12 99.2 5.3 69 472-541 139-214 (428)
431 PRK10078 ribose 1,5-bisphospho 98.4 3.9E-07 8.5E-12 87.8 5.4 56 484-542 1-56 (186)
432 TIGR00101 ureG urease accessor 98.4 6.3E-07 1.4E-11 87.2 6.6 104 487-600 3-108 (199)
433 cd01131 PilT Pilus retraction 98.3 6.8E-07 1.5E-11 87.0 6.3 81 487-572 3-96 (198)
434 TIGR03263 guanyl_kin guanylate 98.3 3.1E-07 6.7E-12 87.9 3.6 77 485-570 1-89 (180)
435 PRK09825 idnK D-gluconate kina 98.3 5.8E-07 1.3E-11 85.7 4.9 66 484-555 2-69 (176)
436 PTZ00132 GTP-binding nuclear p 98.3 6.6E-07 1.4E-11 88.2 4.8 39 487-525 11-67 (215)
437 PRK06315 type III secretion sy 98.3 7.2E-07 1.6E-11 96.0 5.1 101 473-574 153-276 (442)
438 cd00071 GMPK Guanosine monopho 98.3 3.2E-07 6.9E-12 83.8 1.5 72 488-568 2-86 (137)
439 TIGR02322 phosphon_PhnN phosph 98.2 1.6E-06 3.5E-11 82.9 6.4 63 485-548 1-79 (179)
440 PF13748 ABC_membrane_3: ABC t 98.2 0.0058 1.3E-07 59.8 30.6 36 122-157 7-42 (237)
441 cd03282 ABC_MSH4_euk MutS4 hom 98.2 1.1E-06 2.5E-11 85.7 4.5 38 471-508 15-52 (204)
442 PRK15494 era GTPase Era; Provi 98.2 8.1E-07 1.8E-11 93.8 3.6 54 456-509 16-76 (339)
443 PLN02796 D-glycerate 3-kinase 98.2 5.2E-07 1.1E-11 93.6 1.8 63 471-533 78-151 (347)
444 TIGR00235 udk uridine kinase. 98.1 1.1E-06 2.4E-11 86.1 2.8 29 483-511 4-32 (207)
445 PRK03846 adenylylsulfate kinas 98.1 1.9E-06 4.1E-11 83.9 4.0 56 483-542 22-78 (198)
446 TIGR02788 VirB11 P-type DNA tr 98.1 2E-06 4.3E-11 89.7 3.7 74 478-554 137-212 (308)
447 TIGR03497 FliI_clade2 flagella 98.1 3E-06 6.4E-11 91.0 5.1 58 468-526 121-178 (413)
448 PRK05480 uridine/cytidine kina 98.1 5.3E-06 1.1E-10 81.5 6.3 68 483-571 4-77 (209)
449 cd01136 ATPase_flagellum-secre 98.1 4.7E-06 1E-10 86.6 5.8 57 468-525 53-109 (326)
450 PRK07594 type III secretion sy 98.0 3.4E-06 7.3E-11 90.7 4.1 68 458-526 129-196 (433)
451 cd03243 ABC_MutS_homologs The 98.0 5.2E-06 1.1E-10 81.1 4.5 36 479-514 23-59 (202)
452 PRK06793 fliI flagellum-specif 98.0 9.4E-06 2E-10 87.2 6.4 68 458-526 130-197 (432)
453 TIGR01069 mutS2 MutS2 family p 98.0 8.2E-06 1.8E-10 94.6 6.1 51 458-514 295-352 (771)
454 PRK09862 putative ATP-dependen 98.0 6.4E-06 1.4E-10 90.5 4.9 65 461-526 187-251 (506)
455 cd03284 ABC_MutS1 MutS1 homolo 98.0 1.5E-05 3.1E-10 78.8 6.6 73 471-557 17-90 (216)
456 TIGR02546 III_secr_ATP type II 97.9 7.5E-06 1.6E-10 88.4 4.9 56 470-526 131-186 (422)
457 PRK06995 flhF flagellar biosyn 97.9 2.8E-06 6.1E-11 92.5 1.1 61 477-556 248-308 (484)
458 PRK09270 nucleoside triphospha 97.9 1.2E-05 2.6E-10 80.2 5.1 55 483-541 31-89 (229)
459 PRK10416 signal recognition pa 97.9 8.9E-06 1.9E-10 84.8 4.3 72 483-554 112-190 (318)
460 PF13555 AAA_29: P-loop contai 97.9 1.4E-05 3E-10 61.7 4.3 36 477-512 14-50 (62)
461 cd03287 ABC_MSH3_euk MutS3 hom 97.9 3.4E-05 7.3E-10 76.3 8.0 49 471-519 17-66 (222)
462 PF05992 SbmA_BacA: SbmA/BacA- 97.9 0.042 9.1E-07 56.2 34.6 94 340-437 218-311 (315)
463 PLN02318 phosphoribulokinase/u 97.9 1.2E-05 2.7E-10 88.3 4.6 61 486-554 66-127 (656)
464 cd02026 PRK Phosphoribulokinas 97.8 1.3E-05 2.8E-10 81.9 4.3 55 487-543 1-55 (273)
465 smart00382 AAA ATPases associa 97.8 8E-05 1.7E-09 66.7 9.1 45 484-528 1-46 (148)
466 PRK09518 bifunctional cytidyla 97.8 9.5E-06 2.1E-10 94.1 3.5 64 486-554 2-118 (712)
467 TIGR03496 FliI_clade1 flagella 97.8 1.6E-05 3.5E-10 85.4 4.9 68 459-527 112-179 (411)
468 TIGR01026 fliI_yscN ATPase Fli 97.8 1.2E-05 2.5E-10 87.2 3.8 57 470-527 149-205 (440)
469 PRK07960 fliI flagellum-specif 97.8 9.5E-06 2E-10 87.2 2.9 68 474-542 165-238 (455)
470 PRK07261 topology modulation p 97.8 1.2E-05 2.7E-10 76.3 3.3 65 486-551 1-69 (171)
471 TIGR03498 FliI_clade3 flagella 97.8 1.4E-05 3.1E-10 85.8 3.7 56 471-527 127-182 (418)
472 PRK09099 type III secretion sy 97.8 2.1E-05 4.6E-10 84.9 4.5 55 471-526 150-204 (441)
473 PRK08472 fliI flagellum-specif 97.8 1.8E-05 4E-10 85.1 4.1 60 467-527 140-199 (434)
474 PRK05688 fliI flagellum-specif 97.7 1.8E-05 3.8E-10 85.4 2.7 40 472-512 156-195 (451)
475 PRK00023 cmk cytidylate kinase 97.7 3.1E-05 6.6E-10 76.9 4.0 70 485-554 4-91 (225)
476 PRK05922 type III secretion sy 97.7 7.2E-05 1.6E-09 80.5 6.9 55 471-526 144-198 (434)
477 TIGR00554 panK_bact pantothena 97.7 4.4E-05 9.4E-10 78.3 4.9 45 487-531 64-110 (290)
478 PRK00098 GTPase RsgA; Reviewed 97.6 7.4E-05 1.6E-09 77.5 6.3 35 484-518 163-197 (298)
479 cd01854 YjeQ_engC YjeQ/EngC. 97.6 4.1E-05 9E-10 78.9 3.9 67 476-544 153-223 (287)
480 cd03281 ABC_MSH5_euk MutS5 hom 97.6 9.2E-05 2E-09 72.9 6.1 117 473-612 17-139 (213)
481 PF02463 SMC_N: RecF/RecN/SMC 97.6 2.4E-05 5.2E-10 77.4 1.6 32 477-509 17-49 (220)
482 PRK06820 type III secretion sy 97.6 5.3E-05 1.2E-09 81.7 4.3 51 470-521 149-199 (440)
483 KOG0063 RNAse L inhibitor, ABC 97.6 4.1E-05 8.9E-10 79.9 3.2 119 483-616 98-234 (592)
484 PTZ00035 Rad51 protein; Provis 97.6 9E-05 1.9E-09 78.0 5.4 83 481-570 114-203 (337)
485 cd04104 p47_IIGP_like p47 (47- 97.6 0.0001 2.2E-09 71.7 5.5 34 487-520 3-36 (197)
486 cd04155 Arl3 Arl3 subfamily. 97.5 0.0001 2.3E-09 69.5 5.0 40 485-524 14-61 (173)
487 TIGR00606 rad50 rad50. This fa 97.5 9E-05 2E-09 91.7 5.7 79 458-542 5-88 (1311)
488 PRK13851 type IV secretion sys 97.5 0.00036 7.9E-09 73.4 9.3 116 481-608 158-285 (344)
489 cd00879 Sar1 Sar1 subfamily. 97.5 6.7E-05 1.5E-09 72.1 3.6 50 474-524 9-66 (190)
490 PLN03046 D-glycerate 3-kinase; 97.5 7E-05 1.5E-09 79.3 3.6 48 487-534 214-264 (460)
491 PRK06731 flhF flagellar biosyn 97.5 6E-05 1.3E-09 76.5 3.0 63 459-521 41-114 (270)
492 TIGR00368 Mg chelatase-related 97.5 7.6E-05 1.6E-09 82.4 3.5 57 471-527 197-253 (499)
493 PRK14530 adenylate kinase; Pro 97.5 9.7E-05 2.1E-09 72.9 3.9 72 485-571 3-77 (215)
494 cd02025 PanK Pantothenate kina 97.4 6.9E-05 1.5E-09 74.1 2.6 25 487-511 1-25 (220)
495 PRK08972 fliI flagellum-specif 97.4 0.00012 2.7E-09 78.5 4.6 46 473-521 151-196 (444)
496 PRK11545 gntK gluconate kinase 97.4 6E-05 1.3E-09 71.0 1.9 46 491-542 1-47 (163)
497 PRK00889 adenylylsulfate kinas 97.4 8.1E-05 1.8E-09 70.8 2.7 38 483-520 2-40 (175)
498 PRK10751 molybdopterin-guanine 97.4 0.00013 2.8E-09 68.9 3.9 36 486-521 7-45 (173)
499 PRK05541 adenylylsulfate kinas 97.4 6E-05 1.3E-09 71.8 1.5 41 482-522 4-45 (176)
500 PRK07429 phosphoribulokinase; 97.4 0.00015 3.2E-09 75.9 4.4 53 487-542 10-63 (327)
No 1
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-89 Score=738.58 Aligned_cols=492 Identities=27% Similarity=0.388 Sum_probs=425.0
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHH
Q 007122 106 KIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGY 185 (617)
Q Consensus 106 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (617)
..+++++.+.+ | .++++..++++++++++..+..|.+++.++|.+.. +.+. . ..+.. .+...
T Consensus 133 ~~~~rl~~l~~----~-~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~--~~~~-~---~~~~~-------~~~~l 194 (716)
T KOG0058|consen 133 TLLKRLLGLLK----P-EWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISE--GDDS-A---DALKR-------ACTIL 194 (716)
T ss_pred hHHHHHHHHhc----h-hHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHh--ccch-H---HHHHH-------HHHHH
Confidence 36777888886 3 36777888888889999999999999999999864 1111 0 00100 00111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 007122 186 GIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTIL 265 (617)
Q Consensus 186 ~i~~~~~~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ 265 (617)
+...+...+++.+|-+++...+.++..++|.++|+++++++++|||++.+||+.+|++.|+..+..-+...+...+...+
T Consensus 195 ~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~ 274 (716)
T KOG0058|consen 195 LGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLV 274 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 11122446788899999999999999999999999999999999999999999999999888877666555555555555
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHH
Q 007122 266 EISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQY 345 (617)
Q Consensus 266 ~~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~ 345 (617)
..+..+ .+++.++|.++.+.++.+++++++...+.++.++..++.+++.++.++...|.+.+++|||+|+.|+.+.++|
T Consensus 275 ~~~g~~-~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry 353 (716)
T KOG0058|consen 275 QGFGGL-GFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRY 353 (716)
T ss_pred HHHHhH-HHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHH
Confidence 443333 4556678999998888888888888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 346 DEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQ 425 (617)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~ 425 (617)
.+..++..+...|.....+.+....++........++++|++++.+|+||.|++++|+.|..++..++..+..+++++++
T Consensus 354 ~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmk 433 (716)
T KOG0058|consen 354 NKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMK 433 (716)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888777666665555555556666777788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccCCCCCCCCCCCCcceEEEeEEEeecC--CcccceeeeEEEeCCcEEEEECCCcchHHHHHH
Q 007122 426 SLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILR 503 (617)
Q Consensus 426 ~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~nvsF~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~ 503 (617)
+..+.+|++|+++.+|..+..+...|. .-.|.|+|+||+|+||. +.+||+|+||+|+|||.||+||||||||||+++
T Consensus 434 gvGAs~rvFel~dr~P~i~~~G~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTias 512 (716)
T KOG0058|consen 434 GVGASERVFELMDRKPRIPLTGTLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIAS 512 (716)
T ss_pred hcchHHHHHHHhccCCCCCCCCccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHH
Confidence 999999999999998876654333333 33479999999999994 558999999999999999999999999999999
Q ss_pred HHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCC
Q 007122 504 LLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPA 583 (617)
Q Consensus 504 LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~ 583 (617)
||.+||+|++|+|++||+||++++..+||++||+|.|||.||++||+|||.||.++++|||+++|+++|++||||.++|+
T Consensus 513 LL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~ 592 (716)
T KOG0058|consen 513 LLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPD 592 (716)
T ss_pred HHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 584 KYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 584 GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
||||.|||+|..|||||||||||||||+|||.||
T Consensus 593 gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VL 626 (716)
T KOG0058|consen 593 GYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVL 626 (716)
T ss_pred ccccccCCccccccchHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999999999999999999986
No 2
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.7e-85 Score=736.35 Aligned_cols=530 Identities=26% Similarity=0.386 Sum_probs=443.4
Q ss_pred CCCCCceeccCCCCccccc----ccccccC-----CccccccCCcccCCCChhhhhhhHHHHHHHHHHHhcccchhHHHH
Q 007122 56 RFSPITSFLSDSASSRSIL----FSTSTST-----KDKKDFLNKPVTKSNAPEQQIADMKIFRTLASYLWMKDNFEFRLR 126 (617)
Q Consensus 56 ~~~~~~~~~~d~~~~~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 126 (617)
+.+++++++.||+.|++.+ |++.|+| +|.++... . + ..+..+..+++.++ +++..
T Consensus 92 ~~~~~~~~v~dp~~g~~~l~~~e~~~~~tg~~l~l~~~~~~~~--~------~---~~~~~~~~f~~~~~-----~~~~~ 155 (709)
T COG2274 92 KIDKNKVVVLDPAKGIRRLSLEEFEKLWTGIALLLAPTASRKF--K------D---IPPFGLSWFIPLLF-----KYRRL 155 (709)
T ss_pred EecCCeEEEEeCCCCcEEcCHHHHHHhhheeEEEEeccccccc--c------c---ccccchHhHHHHHH-----hhHHH
Confidence 4677889999999999988 8888997 55544210 0 0 01111223444444 33555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 127 VITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFSKV 206 (617)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~~~~~ 206 (617)
+.-.++..++..+++++.|++++.++|.+...... .++..+ .+++++..++..++..+|++++.+.
T Consensus 156 l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~-------~tL~vl-------~ig~~~~~l~~~~l~~lr~~~~~~~ 221 (709)
T COG2274 156 LFEVLLASLLLQLLALATPLFSQIVIDKVLPDASR-------STLTVL-------AIGLLLAALFEALLRLLRTYLIAHL 221 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCch-------hHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666778899999999999999998743221 111111 1112222234567889999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 007122 207 ALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWIT 286 (617)
Q Consensus 207 ~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~~i~ 286 (617)
+.|+..++..++|+|++++|+.||+++++||+.+|+++..+..+++....+..++..++. ++.+.+++.++|+++|++
T Consensus 222 ~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~el~~Ir~flt~~~l~~iiD~~~~--~i~l~vm~~ys~~L~li~ 299 (709)
T COG2274 222 GKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVRELEQIREFLTGSILTLIIDLLFA--LIFLAVMFLYSWKLTLIV 299 (709)
T ss_pred HHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876655555544444333333322 233355667789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 287 SLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFL 366 (617)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (617)
++.+++++++..+..+..++..++..+..++.++.+.|++.|++|||+.+.|.++..+|++...++.+...+..+.....
T Consensus 300 l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 379 (709)
T COG2274 300 LAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALIL 379 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999998888888888877777777788889999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Q 007122 367 NFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQDR 446 (617)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 446 (617)
+.+..++.......++++|+++|++|++|+|++++|.++...+..|+..+.+.+.++++...+.+|+.++++.+++.+.+
T Consensus 380 ~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~ 459 (709)
T COG2274 380 NTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD 459 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 88877788888888899999999999999999999999999999999999999999999999999999999998774433
Q ss_pred CCCCCCCCCCcceEEEeEEEeecCC-cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCC
Q 007122 447 DNAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE 525 (617)
Q Consensus 447 ~~~~~~~~~~~~I~~~nvsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~ 525 (617)
......+...++|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|+.+
T Consensus 460 ~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~ 539 (709)
T COG2274 460 KTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLND 539 (709)
T ss_pred cccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHh
Confidence 3212223334799999999999865 579999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 007122 526 VTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605 (617)
Q Consensus 526 ~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRla 605 (617)
++++++|++|+||+||++||+|||+|||++++|++++||+++||+.|++||||++||+||||+|||+|.+|||||||||+
T Consensus 540 i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrla 619 (709)
T COG2274 540 IDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLA 619 (709)
T ss_pred cCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCC
Q 007122 606 LARAFLKAPPIL 617 (617)
Q Consensus 606 iARAll~~p~IL 617 (617)
|||||++||+||
T Consensus 620 lARaLl~~P~IL 631 (709)
T COG2274 620 LARALLSKPKIL 631 (709)
T ss_pred HHHHhccCCCEE
Confidence 999999999986
No 3
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-84 Score=675.85 Aligned_cols=500 Identities=65% Similarity=0.990 Sum_probs=461.7
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHH
Q 007122 105 MKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIG 184 (617)
Q Consensus 105 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (617)
....+.+..|.|...+|..+.+.+.++++++.+-.....+|++++..+|.+....++. ..+......+++
T Consensus 10 ~~~~~~l~~~~~~k~~p~~r~~v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~----------a~~~~~~~~~~~ 79 (591)
T KOG0057|consen 10 LKILRSLVSYKWPKSRPVLRFRVFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNP----------AVLSTITALLAG 79 (591)
T ss_pred hHHHHHHHhhheecCCceeeehHHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCc----------chhhhhhHHHHH
Confidence 5778888999999989999999999999999999999999999999999874222211 112223456778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 007122 185 YGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTI 264 (617)
Q Consensus 185 ~~i~~~~~~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 264 (617)
|++++++..+++.+|...+.++.+++.++...++|+|++.++.++|.++.+|++.++++|.++.++.++..++.+++|.+
T Consensus 80 y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~ 159 (591)
T KOG0057|consen 80 YGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTL 159 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHH
Q 007122 265 LEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQ 344 (617)
Q Consensus 265 ~~~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~ 344 (617)
+.+.++.+++.+.+++.++++.+..+..|..+.+.++.++.+++++++++.++++..+.|.+.|.++||.||.|+++.++
T Consensus 160 ~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~ 239 (591)
T KOG0057|consen 160 FEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASR 239 (591)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHH
Confidence 99888888888999998889888888999999998999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 345 YDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETV 424 (617)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~ 424 (617)
|+.....+.+...+..+..++.++++..+++...+.+++++...+.+|.||+|+++...++++++..|+..++..+.++.
T Consensus 240 y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~ 319 (591)
T KOG0057|consen 240 YDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELR 319 (591)
T ss_pred HHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccCCCCCCCCCCCCcceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHH
Q 007122 425 QSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRL 504 (617)
Q Consensus 425 ~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~L 504 (617)
++..+++.++...+...++.+. +.+....++.|+|+||+|+|++++++|+++||+|++||+|||||+|||||||++++
T Consensus 320 q~l~Dm~~~~~l~~~~~~i~~~--~~~i~~~~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~ 397 (591)
T KOG0057|consen 320 QALTDMRTLFILLEVDEDIQEA--ALPIELFGGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRL 397 (591)
T ss_pred HHHHhHHHHHhhhhhhhhhhhc--cCCcccCCCcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHH
Confidence 9999999888776655443322 22333345689999999999988899999999999999999999999999999999
Q ss_pred HhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCC
Q 007122 505 LFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAK 584 (617)
Q Consensus 505 L~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~G 584 (617)
|+||++ ++|+|++||+|+++++++++|+.|||||||..||++||.+||.||+|++++||+.++||++++||.|.+||+|
T Consensus 398 LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~G 476 (591)
T KOG0057|consen 398 LLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDG 476 (591)
T ss_pred HHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhcccc
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 585 YSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 585 ldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
|+|.|||+|..|||||||||+||||++|||||+
T Consensus 477 Y~T~VGerG~~LSGGekQrvslaRa~lKda~Il 509 (591)
T KOG0057|consen 477 YQTLVGERGLMLSGGEKQRVSLARAFLKDAPIL 509 (591)
T ss_pred chhhHhhcccccccchHHHHHHHHHHhcCCCeE
Confidence 999999999999999999999999999999985
No 4
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5e-83 Score=652.66 Aligned_cols=498 Identities=46% Similarity=0.750 Sum_probs=439.8
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 007122 109 RTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIA 188 (617)
Q Consensus 109 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~ 188 (617)
+....|+|...++..+.+.+..++++.+.-++.+..|.+.++++|.+..... .. ....+.. +..-..++..
T Consensus 199 ~~~~~ylwp~~~~alql~v~~cl~ll~i~rli~~~~pi~~k~iv~~ltap~~-~~---~~~~~~~-----v~L~flqg~g 269 (790)
T KOG0056|consen 199 RTVAPYLWPTKSIALQLRVVFCLFLLIIGRLINVSLPILSKWIVDELTAPDT-FQ---YSLVFLY-----VFLKFLQGGG 269 (790)
T ss_pred EEeccccccCCCcchhHHHHHHHHHHHHHHHHhhhhHHhHHHHHHhhcCcch-hh---HHHHHHH-----HHHHHHhcCC
Confidence 3456778866556666677777777777888899999999999999863211 00 0000000 1111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 189 RTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEIS 268 (617)
Q Consensus 189 ~~~~~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 268 (617)
. ...+++.+|+++...+.+-..+++..++|+|++.++++|+.++.+||+.+.+++++..+. +....++++.|.++++.
T Consensus 270 t-gsG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~ 347 (790)
T KOG0056|consen 270 T-GSGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLG 347 (790)
T ss_pred c-cccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhh
Confidence 1 225678889999889999999999999999999999999999999999999999988887 77888999999999987
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHH
Q 007122 269 MVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEF 348 (617)
Q Consensus 269 ~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~ 348 (617)
+.++.+...+++++++++++++.+|..+.+.++.|+.+.+++++.+.++..+.-.|++-|.+|||.|++|+++.++|.+.
T Consensus 348 va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreA 427 (790)
T KOG0056|consen 348 VAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREA 427 (790)
T ss_pred hhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHH
Confidence 77666667778889999999999998888888999999999999888888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 349 LRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLV 428 (617)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~ 428 (617)
..+|.+...|......+++..++.++...+...-++++|+|..+.+|+|+++.|.+|+.++..|+++++..+..+|++..
T Consensus 428 il~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfi 507 (790)
T KOG0056|consen 428 ILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFI 507 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhh
Confidence 99999999998888888888888887777777778888999899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccCCCCCCCCCCCCcceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcC
Q 007122 429 DMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 429 ~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
++|+++++++++++..+.++..|.....|.|+|+||+|+|++++|+|+|+||+++||+.+|+|||||+||||++++|+||
T Consensus 508 DmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRf 587 (790)
T KOG0056|consen 508 DMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRF 587 (790)
T ss_pred hHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHH
Confidence 99999999999888777777777776778999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCcccc
Q 007122 509 FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTV 588 (617)
Q Consensus 509 ~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~ 588 (617)
||.++|.|.|||+|++++..+++|++||+||||..|||+||.+||.|++|++++||+++|++.|++||-|.++|+||+|.
T Consensus 588 fdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~ 667 (790)
T KOG0056|consen 588 FDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTR 667 (790)
T ss_pred hhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 589 VGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 589 vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
|||+|.+||||||||+||||+++|+|.|+
T Consensus 668 VGERGLkLSGGEKQRVAiARtiLK~P~iI 696 (790)
T KOG0056|consen 668 VGERGLKLSGGEKQRVAIARTILKAPSII 696 (790)
T ss_pred hhhcccccCCcchhhHHHHHHHhcCCcEE
Confidence 99999999999999999999999999874
No 5
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=7.7e-79 Score=701.55 Aligned_cols=530 Identities=21% Similarity=0.307 Sum_probs=421.1
Q ss_pred CCCCCceeccCC--CCccccc----ccccccC-----CccccccCCcccCCCChhhhhhhHHHHHHHHHHHhcccchhHH
Q 007122 56 RFSPITSFLSDS--ASSRSIL----FSTSTST-----KDKKDFLNKPVTKSNAPEQQIADMKIFRTLASYLWMKDNFEFR 124 (617)
Q Consensus 56 ~~~~~~~~~~d~--~~~~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (617)
+.+++++++.|| +.|++.+ |++.|+| +|+++|.++ + .+...++.++++++ +++
T Consensus 92 ~~~~~~~~i~dP~~~~g~~~~~~~ef~~~~~g~~l~~~~~~~~~~~----~-------~~~~~~~~~~~~~~-----~~~ 155 (708)
T TIGR01193 92 GVTKNHLIIADPDPTVGITKISKEDFYEEWTGIAIFISPTPEYKPI----K-------EKENSLLKFIPLIT-----RQK 155 (708)
T ss_pred EEeCCEEEEEcCCcccCCEEecHHHHHhhCCCEEEEEEeccccccc----c-------cccchHHHHHHHHH-----HHH
Confidence 466889999999 8999887 8899999 777777211 0 01122445566665 335
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 125 LRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFS 204 (617)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~~~ 204 (617)
+.+...+++.++..++.++.|++++.++|.+..... . ..+..+. + .++ ++.++..++.+++.++..
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~-~------~~l~~~~---~-~~~---~~~~~~~~~~~~~~~~~~ 221 (708)
T TIGR01193 156 KLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM-M------GTLGIIS---I-GLI---IAYIIQQILSYIQIFLLN 221 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-h------HHHHHHH---H-HHH---HHHHHHHHHHHHHHHHHH
Confidence 556666666777888899999999999998753211 0 1111111 0 111 111233467788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 007122 205 KVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAW 284 (617)
Q Consensus 205 ~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~~ 284 (617)
+.+.++..++|.++|+|++++|+.||+++++|++.+++++.....+.+.... ...+..++.++ +..++++.++|++++
T Consensus 222 ~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~~~~~i~~~~~~~~-~~~~~~~~~~~-~~~~~l~~~~~~l~l 299 (708)
T TIGR01193 222 VLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFTDASSIIDALASTI-LSLFLDMWILV-IVGLFLVRQNMLLFL 299 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999988885443333333322 22222222222 222334556777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 285 ITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLA 364 (617)
Q Consensus 285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (617)
++++++++++++...+.+..++..++..+..++..+.+.|.++|+++||+++.|+.+.++|++..+++.+...+..+...
T Consensus 300 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (708)
T TIGR01193 300 LSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQ 379 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776666666666777777777777888889999999999999999999999999999999888888877766655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 007122 365 FLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQ 444 (617)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 444 (617)
.......++.....+.++++|++++.+|.+|+|+++++..+...+..|+..+...+..++++..+++|+.++++.+++.+
T Consensus 380 ~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 459 (708)
T TIGR01193 380 GQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFI 459 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 55544444444455566678999999999999999999999999999999999999999999999999999998765432
Q ss_pred CCCCCCCCCCCCcceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCC
Q 007122 445 DRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524 (617)
Q Consensus 445 ~~~~~~~~~~~~~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~ 524 (617)
+.....+.+...+.|+|+||+|+|++++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|++
T Consensus 460 ~~~~~~~~~~~~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~ 539 (708)
T TIGR01193 460 NKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLK 539 (708)
T ss_pred ccccccCCCCCCCcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHH
Confidence 22111111223458999999999986678999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhcceEEEccCCCcccccHHHHHhcC-CCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 525 EVTLESLRKSIGVVPQDTVLFNDTIFHNIRYG-RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 525 ~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g-~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
+++.+++|++|+||||||+||+|||+|||+++ +|+++||++++|++.++++|+|+++|+||||+|||+|.+||||||||
T Consensus 540 ~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQR 619 (708)
T TIGR01193 540 DIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQR 619 (708)
T ss_pred HcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
|+||||++++|+||
T Consensus 620 ialARall~~p~il 633 (708)
T TIGR01193 620 IALARALLTDSKVL 633 (708)
T ss_pred HHHHHHHhhCCCEE
Confidence 99999999999985
No 6
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=2.5e-78 Score=697.87 Aligned_cols=530 Identities=22% Similarity=0.290 Sum_probs=423.4
Q ss_pred CCCCCceeccCCCCccccc----ccccccC-----CccccccCCcccCCCChhhhhhhHHHHHHHHHHHhcccchhHHHH
Q 007122 56 RFSPITSFLSDSASSRSIL----FSTSTST-----KDKKDFLNKPVTKSNAPEQQIADMKIFRTLASYLWMKDNFEFRLR 126 (617)
Q Consensus 56 ~~~~~~~~~~d~~~~~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 126 (617)
+.+++++++.||+.|++.+ |++.|+| +|++++.+. +.....++.++++++ +++..
T Consensus 92 ~~~~~~~~i~dP~~g~~~~~~~e~~~~~~g~~l~~~~~~~~~~~-----------~~~~~~~~~~~~~l~-----~~~~~ 155 (710)
T TIGR03796 92 GFRGGRVYLNDPALGPRTVSLEEFDESFTGVVLTFEPGPEFQKG-----------GRKPSLLRALWRRLR-----GSRGA 155 (710)
T ss_pred EEeCCEEEEECCCCCCEEccHHHHHhhCCCeEEEEEECcccccc-----------CcCcccHHHHHHHHH-----HHHHH
Confidence 4678899999999999987 8899999 777777211 111133455666664 23555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 127 VITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFSKV 206 (617)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~~~~~ 206 (617)
++..+++.++..++.++.|++++.++|.+..... . .++..+.+ ++.++.++..++.+++.++..++
T Consensus 156 ~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~-~------~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 221 (710)
T TIGR03796 156 LLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR-Q------DWLRPLLL-------GMGLTALLQGVLTWLQLYYLRRL 221 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-h------hHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666677788889999999999998763211 1 11111111 11111123356778899999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 007122 207 ALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWIT 286 (617)
Q Consensus 207 ~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~~i~ 286 (617)
+.++..+++.++|+|++++|+.+|+++++|++.++++++. .+..++......++..++.+++ ..++++.++|+++++.
T Consensus 222 ~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~~-~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~ 299 (710)
T TIGR03796 222 QIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLND-QVAEFLSGQLATTALDAVMLVF-YALLMLLYDPVLTLIG 299 (710)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888764 3444433222222222222222 2234455677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 287 SLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFL 366 (617)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (617)
++.+++++++...+.+...+..++..+..++..+.+.|.++|+++||++++|+.+.++|++..+++.+...+..+.....
T Consensus 300 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (710)
T TIGR03796 300 IAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQIL 379 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666676777888999999999999999999999999999998888888877777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Q 007122 367 NFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQDR 446 (617)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 446 (617)
..+...+.....++++++|++++.+|.+|+|+++++..++..+..|+..+...+..++++..+++|+.++++.+++....
T Consensus 380 ~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~ 459 (710)
T TIGR03796 380 GVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLE 459 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 55555555555566677889999999999999999999999999999999999999999999999999999876543221
Q ss_pred C----C-CCCC-CCCCcceEEEeEEEeecC-CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEEC
Q 007122 447 D----N-AMPL-NLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519 (617)
Q Consensus 447 ~----~-~~~~-~~~~~~I~~~nvsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~id 519 (617)
. . .... +...+.|+++||+|+|++ ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++|
T Consensus 460 ~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~id 539 (710)
T TIGR03796 460 EEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFD 539 (710)
T ss_pred cccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 1 0 0111 112357999999999985 4689999999999999999999999999999999999999999999999
Q ss_pred CEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChH
Q 007122 520 GQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGG 599 (617)
Q Consensus 520 G~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGG 599 (617)
|+|+++++.+++|++|+||||||++|+|||||||++++|+++||++++|++.++++++|+++|+||||.+||+|.+||||
T Consensus 540 g~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGG 619 (710)
T TIGR03796 540 GIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGG 619 (710)
T ss_pred CEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 007122 600 EKQRVALARAFLKAPPIL 617 (617)
Q Consensus 600 QrQRlaiARAll~~p~IL 617 (617)
|||||+||||++++|+||
T Consensus 620 QrQRiaLARall~~p~il 637 (710)
T TIGR03796 620 QRQRLEIARALVRNPSIL 637 (710)
T ss_pred HHHHHHHHHHHhhCCCEE
Confidence 999999999999999985
No 7
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=3.2e-77 Score=686.60 Aligned_cols=532 Identities=23% Similarity=0.302 Sum_probs=419.8
Q ss_pred CCCCCc-eeccCCCCc--cccc----ccccccC-----CccccccCCcccCCCChhhhhhhHHHHHHHHHHHhcccchhH
Q 007122 56 RFSPIT-SFLSDSASS--RSIL----FSTSTST-----KDKKDFLNKPVTKSNAPEQQIADMKIFRTLASYLWMKDNFEF 123 (617)
Q Consensus 56 ~~~~~~-~~~~d~~~~--~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (617)
+.++++ +++.||+.| ++.+ |+..|+| +|.+++.++ +++ . .....++.++++++ ++
T Consensus 79 ~~~~~~~~~i~DP~~g~~~~~~~~~e~~~~~~g~~l~~~~~~~~~~~----~~~-~---~~~~~~~~~~~~~~-----~~ 145 (694)
T TIGR03375 79 GIDEDGKARVLLPETGDGEQELSLDALEALYSGYAIFVRPQFRFDAR----ADE-L---ISPRPKHWFWSTLK-----ES 145 (694)
T ss_pred EEcCCCcEEEEccCCCCCceEecHHHHHhhcCCeEEEEecccccccc----ccc-c---cccccchHHHHHHH-----HH
Confidence 457777 999999999 8777 8888888 677766211 000 0 01122334555554 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 124 RLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVF 203 (617)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~~ 203 (617)
++.+...+++.++..++.+..|++++.++|.+..... . ..+..+. ++.+ +..++..++.+++.++.
T Consensus 146 ~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~-~------~~l~~~~---~~~~----~~~~~~~~~~~~~~~~~ 211 (694)
T TIGR03375 146 WPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA-F------ETLWVLA---IGVA----LAIVFDFVLKTLRSYFL 211 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-H------hHHHHHH---HHHH----HHHHHHHHHHHHHHHHH
Confidence 5556666777777888899999999999998753211 1 1111111 1111 11113356778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 007122 204 SKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFA 283 (617)
Q Consensus 204 ~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~ 283 (617)
.+.+.++..++|.++|+|++++|+.| +++++|++.++++ +.+.+..++.......+..++.+++. .++++.++|.++
T Consensus 212 ~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~~-d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~ 288 (694)
T TIGR03375 212 DVAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQLR-EFESVRDFFTSATLTALIDLPFALLF-LLVIAIIGGPLV 288 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHhHHH
Confidence 99999999999999999999999998 7889999988884 55555544433222222222222222 233445677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 284 WITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSL 363 (617)
Q Consensus 284 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (617)
++.++.+++++++...+.+...+..++..+..++..+.+.|.++|+++||+++.|+.+.++|++..+++.+...+..+..
T Consensus 289 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (694)
T TIGR03375 289 WVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLS 368 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766666666666666666677777788889999999999999999999999999999999999888888877776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 007122 364 AFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADI 443 (617)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 443 (617)
........++......+++++|++.+.+|.+|+|+++++..++..+..|+..+...+.+++.+..+++|+.++++.+++.
T Consensus 369 ~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~ 448 (694)
T TIGR03375 369 NLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVER 448 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 66655555555555566667888999999999999999999999999999999999999999999999999999876543
Q ss_pred cCCCCCCCCCCCCcceEEEeEEEeecC-CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEe
Q 007122 444 QDRDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD 522 (617)
Q Consensus 444 ~~~~~~~~~~~~~~~I~~~nvsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~ 522 (617)
++.......+...+.|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|.+||+|
T Consensus 449 ~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 528 (694)
T TIGR03375 449 PEGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVD 528 (694)
T ss_pred CCCCCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 221111111112357999999999985 4689999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 007122 523 ICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQ 602 (617)
Q Consensus 523 i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQ 602 (617)
+++++.+++|++|+||||||++|+|||+|||++++|++++|++++|++.++++|+|++||+||||.+||+|.+|||||||
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQ 608 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQ 608 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCC
Q 007122 603 RVALARAFLKAPPIL 617 (617)
Q Consensus 603 RlaiARAll~~p~IL 617 (617)
||+||||++++|+||
T Consensus 609 RlalARall~~p~il 623 (694)
T TIGR03375 609 AVALARALLRDPPIL 623 (694)
T ss_pred HHHHHHHHhcCCCEE
Confidence 999999999999985
No 8
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=9.6e-77 Score=663.28 Aligned_cols=479 Identities=23% Similarity=0.287 Sum_probs=380.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 123 FRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAV 202 (617)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~ 202 (617)
+++.++..+++.++.++..+..|+++++++|.+.... .. ..+... ...++.+.+ +..++.+++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~~-----~~~~~~----~~~~~~~~~---~~~~~~~~~~~~ 76 (529)
T TIGR02868 11 RTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMP--PV-----LYLSVA----AVAVRAFGI---GRAVFRYLERLV 76 (529)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--hh-----HHHHHH----HHHHHHHHH---HHHHHHHHHHHH
Confidence 3555667777777788889999999999999764211 00 000000 011111111 224566777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 007122 203 FSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPF 282 (617)
Q Consensus 203 ~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l 282 (617)
..+...++..++|.++|+|++++|..||+++++|++.+++++|.+.++.........++..++.+++ ..++++.++|.+
T Consensus 77 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l 155 (529)
T TIGR02868 77 GHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSA-AVAAIALLSVPA 155 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHH
Confidence 8888999999999999999999999999999999999999888887776554433333333332222 223344556666
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 283 AWITSLSVVAYVVFTLSVT-QWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQR 361 (617)
Q Consensus 283 ~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 361 (617)
++++++.++++.++...+. +..++..++..+..++..+.+.|.++|+++||+|+.|+.+.++|++..+++.+...+..+
T Consensus 156 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (529)
T TIGR02868 156 ALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAAR 235 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665554444333332232 323344455566677888999999999999999999999999999999999888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 007122 362 SLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKA 441 (617)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 441 (617)
..........++.......++++|++.+.+|.+|+|+++++..+...+..|+..+...+..++++.++.+|+.++++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 315 (529)
T TIGR02868 236 ATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKG 315 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 66665555554444455556667888899999999999999999999999999999999999999999999999998765
Q ss_pred cccCCCCC--CCCCCCCcceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEEC
Q 007122 442 DIQDRDNA--MPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519 (617)
Q Consensus 442 ~~~~~~~~--~~~~~~~~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~id 519 (617)
+.++.... ...+...+.|+|+||+|+|++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 316 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~ 395 (529)
T TIGR02868 316 PRPEGVVPAAGALGLGKPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLD 395 (529)
T ss_pred CcCCCCCCCCcccCCCCceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 42221111 1111123579999999999876789999999999999999999999999999999999999999999999
Q ss_pred CEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChH
Q 007122 520 GQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGG 599 (617)
Q Consensus 520 G~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGG 599 (617)
|+|++++ .+++|++|+||||||+||+|||||||++|+|+++||++++|++.|+++|||++||+||||+|||+|.+||||
T Consensus 396 g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 474 (529)
T TIGR02868 396 GVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGG 474 (529)
T ss_pred CEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHH
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 007122 600 EKQRVALARAFLKAPPIL 617 (617)
Q Consensus 600 QrQRlaiARAll~~p~IL 617 (617)
||||||||||+++||+||
T Consensus 475 QrQRiaiARall~~~~il 492 (529)
T TIGR02868 475 ERQRLALARALLADAPIL 492 (529)
T ss_pred HHHHHHHHHHHhcCCCEE
Confidence 999999999999999985
No 9
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.3e-76 Score=680.86 Aligned_cols=524 Identities=22% Similarity=0.280 Sum_probs=412.1
Q ss_pred CCCCCceeccCCCCccc-cc----ccccccC---CccccccCCcccCCCChhhhhhhHHHHHHHHHHHhcccchhHHHHH
Q 007122 56 RFSPITSFLSDSASSRS-IL----FSTSTST---KDKKDFLNKPVTKSNAPEQQIADMKIFRTLASYLWMKDNFEFRLRV 127 (617)
Q Consensus 56 ~~~~~~~~~~d~~~~~~-~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 127 (617)
+.+++++++.||+.|++ .+ |+.. +| +..+++. + ++ ..++.+.++.+ .+.++.+
T Consensus 78 ~~~~~~~~i~dP~~g~~~~~~~~e~~~~-~g~~~~~~~~~~----~-----~~-----~~~~~~~~~~~----~~~~~~~ 138 (686)
T TIGR03797 78 PVSRGGYEIFDPATGTRRRVDAAMAATL-APEAYMFYRPLP----D-----KA-----LGLRDLLRFAL----RGARRDL 138 (686)
T ss_pred EEcCCEEEEECCCCCCCcccCHHHHHhc-CCEEEEEecCCc----c-----cc-----ccHHHHHHHHH----hhHHHHH
Confidence 56889999999999997 55 6565 55 2222241 0 00 11233333321 1335566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 128 ITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFSKVA 207 (617)
Q Consensus 128 ~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~~~~~~ 207 (617)
+..+++.++..++.+..|++++.++|.+..... . ..+..+.+ . +.++.++..++.+++.++..+++
T Consensus 139 ~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~-~------~~l~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~ 204 (686)
T TIGR03797 139 LAILAMGLLGTLLGMLVPIATGILIGTAIPDAD-R------SLLVQIAL----A---LLAAAVGAAAFQLAQSLAVLRLE 204 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-h------hHHHHHHH----H---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777778889999999999999998863211 1 11111111 1 11111233467778888999999
Q ss_pred HHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 007122 208 LRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWITS 287 (617)
Q Consensus 208 ~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~~i~~ 287 (617)
.++..++|.++|+|++++|+.||+++++|++.+++++ .+.+..++.......+..++.. ++..++++.++|+++++++
T Consensus 205 ~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~~-~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~l~li~l 282 (686)
T TIGR03797 205 TRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAMG-ISQIRRILSGSTLTTLLSGIFA-LLNLGLMFYYSWKLALVAV 282 (686)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888874 4444444332222222222212 1223344556777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 288 LSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLN 367 (617)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (617)
+++++++++.....+...+..++..+..++.++.+.|.++|+++||+++.|+++.++|++..+++.+...+..+......
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (686)
T TIGR03797 283 ALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLT 362 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666566666666666777778889999999999999999999999999999999999888888877766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Q 007122 368 FGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQDRD 447 (617)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 447 (617)
....++......+++++|++++.+|.+|+|+++++..++..+..|+..+...+.+++++..+++|+.++++.+++..+..
T Consensus 363 ~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~ 442 (686)
T TIGR03797 363 VFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK 442 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc
Confidence 55555555556666778899999999999999999999999999999999999999999999999999998765432211
Q ss_pred CCCCCCCCCcceEEEeEEEeecC-CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCC
Q 007122 448 NAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526 (617)
Q Consensus 448 ~~~~~~~~~~~I~~~nvsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~ 526 (617)
..+ ....+.|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|++++
T Consensus 443 -~~~-~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~ 520 (686)
T TIGR03797 443 -TDP-GKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGL 520 (686)
T ss_pred -CCC-CCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcC
Confidence 111 112357999999999974 56899999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 007122 527 TLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606 (617)
Q Consensus 527 ~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlai 606 (617)
+++++|++|+||||||++|+|||+|||++++| ++||++++|++.++++++|+++|+||||++||+|.+|||||||||+|
T Consensus 521 ~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRial 599 (686)
T TIGR03797 521 DVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLI 599 (686)
T ss_pred CHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCC
Q 007122 607 ARAFLKAPPIL 617 (617)
Q Consensus 607 ARAll~~p~IL 617 (617)
|||+++||+||
T Consensus 600 ARAll~~p~iL 610 (686)
T TIGR03797 600 ARALVRKPRIL 610 (686)
T ss_pred HHHHhcCCCEE
Confidence 99999999985
No 10
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.9e-76 Score=670.08 Aligned_cols=425 Identities=30% Similarity=0.424 Sum_probs=370.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc-cCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 192 ASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLS-RETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMV 270 (617)
Q Consensus 192 ~~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~-~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 270 (617)
..+...++.++|...++++..++|.++|+++++++.+|||+ +++|.+.+|+..|...+...+..-+..++..+..++ .
T Consensus 720 ~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~-~ 798 (1228)
T KOG0055|consen 720 SGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVI-I 798 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 34667788999999999999999999999999999999986 334999999999988888777666666666554433 3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHH
Q 007122 271 SGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLR 350 (617)
Q Consensus 271 ~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~ 350 (617)
..++.+.++|.++++++...+++.+..+...++.....++..++..+.+....|++.||+||++|+.|+++.+.|.+.++
T Consensus 799 ~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~ 878 (1228)
T KOG0055|consen 799 GIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELE 878 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHH
Confidence 34566778899999988888887777777777777777777788888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 351 RYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDM 430 (617)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~ 430 (617)
...+...+...+.+....+...+.....++++++|++++.+|.+++.+++-....+..-...+.......+++.++..++
T Consensus 879 ~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa 958 (1228)
T KOG0055|consen 879 KPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAA 958 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 99999888888877766666666667788888999999999999999988776555554555666777788999999999
Q ss_pred HHHHHHhcccccccCCC-CCCCCCCCCcceEEEeEEEeec--CCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhc
Q 007122 431 KSMFQLLEEKADIQDRD-NAMPLNLKGGSIQFDNVHFSYL--TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 431 ~ri~~~l~~~~~~~~~~-~~~~~~~~~~~I~~~nvsF~Y~--~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~g 507 (617)
.+++++++.++.++... .....+.-.|+|+|+||+|+|| ++.+||+|+||+|++||++||||||||||||++.||.|
T Consensus 959 ~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeR 1038 (1228)
T KOG0055|consen 959 GSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLER 1038 (1228)
T ss_pred HHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHH
Confidence 99999999988654432 1111222347899999999999 56699999999999999999999999999999999999
Q ss_pred CCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccc
Q 007122 508 SFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYST 587 (617)
Q Consensus 508 l~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT 587 (617)
+|||++|.|.|||+|++++++++||++||.|+|||.||++||||||+||.++++++|+.+|++.|++|+||.+||+||||
T Consensus 1039 fYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT 1118 (1228)
T KOG0055|consen 1039 FYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDT 1118 (1228)
T ss_pred hcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccC
Confidence 99999999999999999999999999999999999999999999999996669999999999999999999999999999
Q ss_pred cccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 588 VVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 588 ~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
.|||+|.+||||||||||||||++|||+||
T Consensus 1119 ~vGerG~QLSGGQKQRIAIARAilRnPkIL 1148 (1228)
T KOG0055|consen 1119 RVGERGVQLSGGQKQRIAIARAILRNPKIL 1148 (1228)
T ss_pred ccCcccCcCCchHHHHHHHHHHHHcCCCee
Confidence 999999999999999999999999999997
No 11
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.5e-75 Score=658.69 Aligned_cols=489 Identities=20% Similarity=0.238 Sum_probs=378.3
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 007122 108 FRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGI 187 (617)
Q Consensus 108 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 187 (617)
++.++++++ ++++.+++.+++.++..++.+..|++++.++|.+.....+.. .+....+ .+++..
T Consensus 10 ~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~------~~~~~~~----~~~~~~- 73 (588)
T PRK11174 10 TRWLKQQSK-----PAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPRE------ALLPPFI----LLILLF- 73 (588)
T ss_pred hHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh------HHHHHHH----HHHHHH-
Confidence 455666665 446677777778888888999999999999997642111100 0111110 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 007122 188 ARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEI 267 (617)
Q Consensus 188 ~~~~~~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 267 (617)
++..++.+++.++..+.+.++..++|.++|+|++++|+.+|+++++|++.+++++|.+.++......+..++..++.+
T Consensus 74 --~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~ 151 (588)
T PRK11174 74 --VLRALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVP 151 (588)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 123456777888888999999999999999999999999999999999999998888888766554444444443333
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHH
Q 007122 268 SMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDE 347 (617)
Q Consensus 268 ~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~ 347 (617)
+.. .++++.++|.+++++++++++.+++...+.+..++..++..+..++.++.+.|.++|+++||+|++|+.+.++|++
T Consensus 152 ~~~-~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~ 230 (588)
T PRK11174 152 LLI-LIAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRS 230 (588)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHH
Confidence 222 2344456777776666655555555555556666666666777788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH---------HHHHHHHHHHHHHHHHHHH
Q 007122 348 FLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDL---------VMVNGLLFQLSLPLNFLGS 418 (617)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l---------~~~~~~~~~l~~pl~~l~~ 418 (617)
..+++.+...+..+..........++.......+++++++.+ .|.+|+|++ +++..+...+..|+..+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~ 309 (588)
T PRK11174 231 ASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGT 309 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHH
Confidence 999888887776665444444333333222222223333333 477888764 2333556678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCcceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchH
Q 007122 419 VYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGK 498 (617)
Q Consensus 419 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGK 498 (617)
.+..++++.++.+|+.++++.+++..............++|+|+||+|.|++++++|+|+||+|+|||++||||+|||||
T Consensus 310 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGK 389 (588)
T PRK11174 310 FYHAKAQAVGAAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGK 389 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCH
Confidence 99999999999999999998754322111111111123479999999988766789999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHH
Q 007122 499 STILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTI 578 (617)
Q Consensus 499 STL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I 578 (617)
|||+++|+|+| |++|+|++||+|+++++.+++|++|+||||||+||+|||||||++|+|+++|||+++|++.|+++|||
T Consensus 390 STL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i 468 (588)
T PRK11174 390 TSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFL 468 (588)
T ss_pred HHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHH
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 579 MNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 579 ~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
++||+||||.|||+|.+|||||||||+||||+++||+||
T Consensus 469 ~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~Il 507 (588)
T PRK11174 469 PLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLL 507 (588)
T ss_pred HhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999999999999999999999986
No 12
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.4e-74 Score=664.31 Aligned_cols=527 Identities=24% Similarity=0.351 Sum_probs=416.9
Q ss_pred CCCCCceeccCCCCc-cccc----ccccccC-----CccccccCCcccCCCChhhhhhhHHHHHHHHHHHhcccchhHHH
Q 007122 56 RFSPITSFLSDSASS-RSIL----FSTSTST-----KDKKDFLNKPVTKSNAPEQQIADMKIFRTLASYLWMKDNFEFRL 125 (617)
Q Consensus 56 ~~~~~~~~~~d~~~~-~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 125 (617)
+++++++++.||+.| ++.+ |+..|+| +|++ +. ++ + +...++.++++++ +++.
T Consensus 78 ~~~~~~~~i~Dp~~g~~~~i~~~e~~~~~~g~~l~~~~~~-~~----~~----~----~~~~~~~~~~~~~-----~~~~ 139 (694)
T TIGR01846 78 KLTANGVTIYDPPGDAPEVLSREVLEALWSGTVILLATRS-VA----GK----A----LKFGFSWFIPAII-----RYRK 139 (694)
T ss_pred EEcCCEEEEEcCCCCCceeeCHHHHHhhCCCeEEEEecCc-cc----cc----c----ccCcHHHHHHHHH-----HHHH
Confidence 567889999999998 6665 8888888 5554 31 00 0 0112334555554 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 126 RVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFSK 205 (617)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~~~~ 205 (617)
.+...+++.++..++.++.|++++.++|.+..... . ..+..+. ..+ .+..++..++.+++.++..+
T Consensus 140 ~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~-~------~~l~~l~----~~~---~~~~~~~~~~~~l~~~~~~~ 205 (694)
T TIGR01846 140 QFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG-L------STLSVLA----LAM---LAVAIFEPALGGLRTYLFAH 205 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-h------hHHHHHH----HHH---HHHHHHHHHHHHHHHHHHHH
Confidence 55666666777888889999999999998753211 1 1111111 111 11112335678889999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 007122 206 VALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWI 285 (617)
Q Consensus 206 ~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~~i 285 (617)
++.++..++|.++|+|++++|+.||+++++|++.++++ +.+.+..+........+..++.+++ ..++++.++|.++++
T Consensus 206 ~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl~-d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li 283 (694)
T TIGR01846 206 LTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARVR-ELEQIRNFLTGSALTVVLDLLFVVV-FLAVMFFYSPTLTGV 283 (694)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988885 4455554433222222222221212 223445567777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 286 TSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAF 365 (617)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (617)
+++++++++++...+.+..++..++..+..++.++.+.|.++|+++||+++.|+.+.++|++..+++.+...+..+....
T Consensus 284 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (694)
T TIGR01846 284 VIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNI 363 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666666666666656656666667778889999999999999999999999999999999998888887777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Q 007122 366 LNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQD 445 (617)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 445 (617)
......++.....++++++|++++.+|.+|+|+++++..+...+..|+..+...+..++++..+++|+.++++.+++...
T Consensus 364 ~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 443 (694)
T TIGR01846 364 AGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRS 443 (694)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC
Confidence 55555555555566667789999999999999999999999999999999999999999999999999999987654322
Q ss_pred CCCCCCCCCCCcceEEEeEEEeecC-CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCC
Q 007122 446 RDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524 (617)
Q Consensus 446 ~~~~~~~~~~~~~I~~~nvsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~ 524 (617)
. .....+...+.|+++||+|+|++ ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|++
T Consensus 444 ~-~~~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~ 522 (694)
T TIGR01846 444 A-GLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLA 522 (694)
T ss_pred C-CCCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehh
Confidence 1 11111112357999999999975 468999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 007122 525 EVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (617)
Q Consensus 525 ~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRl 604 (617)
+++.+++|++|+|||||+++|++||+|||++++|++++++++++++.++++++|+++|+||||.+||+|.+|||||||||
T Consensus 523 ~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri 602 (694)
T TIGR01846 523 IADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRI 602 (694)
T ss_pred hCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCC
Q 007122 605 ALARAFLKAPPIL 617 (617)
Q Consensus 605 aiARAll~~p~IL 617 (617)
+||||++++|+||
T Consensus 603 ~lARall~~~~il 615 (694)
T TIGR01846 603 AIARALVGNPRIL 615 (694)
T ss_pred HHHHHHHhCCCEE
Confidence 9999999999985
No 13
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.1e-73 Score=656.80 Aligned_cols=490 Identities=25% Similarity=0.350 Sum_probs=394.0
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHH
Q 007122 107 IFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYG 186 (617)
Q Consensus 107 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (617)
.+++++++++ +.+..+..++++.++.++..+..|++++.++|.+..... .. .+...++.++
T Consensus 148 ~~~~l~~~~~-----~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~-~~------~~~~~~~~~~------- 208 (711)
T TIGR00958 148 LLFRLLGLSG-----RDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKG-PP------ALASAIFFMC------- 208 (711)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HH------HHHHHHHHHH-------
Confidence 4556666665 335556777777788889999999999999998753211 11 1111111001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 007122 187 IARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILE 266 (617)
Q Consensus 187 i~~~~~~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 266 (617)
+..++..++..++..++.....++..++|.++|++++++|..||+++++|++.+++++|.+.++......+..++..++.
T Consensus 209 ~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~ 288 (711)
T TIGR00958 209 LLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVM 288 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112345667788888899999999999999999999999999999999999999888877766554444444444433
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHH
Q 007122 267 ISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYD 346 (617)
Q Consensus 267 ~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~ 346 (617)
++.. .++++.++|.++++.++.+++.+++...+.+...+..++.++..++..+.+.|.++|+++||+|+.|+.+.++|+
T Consensus 289 ~i~~-~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~ 367 (711)
T TIGR00958 289 LLGL-LGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFK 367 (711)
T ss_pred HHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHH
Confidence 3322 233445677777666666665555555566666666667777778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 347 EFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQS 426 (617)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~ 426 (617)
+..++..+...+.............++.......++++|++++.+|.+|+|+++++..+...+..|+..+...+.+++++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~ 447 (711)
T TIGR00958 368 EALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQA 447 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888777666554444444433344444555667888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccCCCCCCCCCCCCcceEEEeEEEeecC--CcccceeeeEEEeCCcEEEEECCCcchHHHHHHH
Q 007122 427 LVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRL 504 (617)
Q Consensus 427 ~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~nvsF~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~L 504 (617)
.++.+|+.++++.+++.++.....+. ...+.|+|+||+|+||+ ++++|+|+||+|+|||++|||||||||||||+++
T Consensus 448 ~~a~~ri~~~l~~~~~~~~~~~~~~~-~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~l 526 (711)
T TIGR00958 448 VGASEKVFEYLDRKPNIPLTGTLAPL-NLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAAL 526 (711)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCC-CCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 99999999999876543322211111 12357999999999985 4689999999999999999999999999999999
Q ss_pred HhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCC
Q 007122 505 LFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAK 584 (617)
Q Consensus 505 L~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~G 584 (617)
|+|+|+|++|+|++||+|+++++.+++|++|+||||||++|+|||||||++++++.+||+++++++.++++++|+++|+|
T Consensus 527 L~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~G 606 (711)
T TIGR00958 527 LQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNG 606 (711)
T ss_pred HHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 585 YSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 585 ldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
|||.+||+|.+||||||||||||||+++||+||
T Consensus 607 ldT~ige~G~~LSGGQkQRlalARALl~~p~IL 639 (711)
T TIGR00958 607 YDTEVGEKGSQLSGGQKQRIAIARALVRKPRVL 639 (711)
T ss_pred cCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999999999999999985
No 14
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=7.6e-73 Score=636.40 Aligned_cols=474 Identities=32% Similarity=0.493 Sum_probs=386.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 124 RLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVF 203 (617)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~~ 203 (617)
+ .+.+++++.++..++.+..|+++..++|.+.. ... .........+...+ +..++.+...+..
T Consensus 14 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~------~~~~~~~~~~~~~~-------~~~v~~~~~~~~~ 76 (567)
T COG1132 14 K-LLLLAILLLLLSALLSLLLPLLIGRIIDALLA---DLG------ELLELLLLLLLLAL-------LGGVLRALQSYLG 76 (567)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hHH------HHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 5 66777777778889999999999999998751 100 00000000001111 1234455555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 007122 204 SKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFA 283 (617)
Q Consensus 204 ~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~ 283 (617)
.+...++..++|.++|++++++|+.+|++..+|++.+++++|...++.........+...++.+ +...++++..+|.++
T Consensus 77 ~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~ 155 (567)
T COG1132 77 SRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLL-IGSLVLLFSLSWRLA 155 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHhHHHH
Confidence 6777899999999999999999999999999999999999888888776655422222222222 222234455566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 284 WITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSL 363 (617)
Q Consensus 284 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (617)
+++++..+++.+....+.+...+..++.++..++.++.+.|.++|+++||+|+.|+.+.+++++..+...+...+..+..
T Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (567)
T COG1132 156 LILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLE 235 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555555555545544466666777778889999999999999999999999999999998888888877766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 007122 364 AFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADI 443 (617)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 443 (617)
.........+.......+++++.+.+..+.+++|+++++..+...+..|+..+...+..++.+..+.+|+.++++.+++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~ 315 (567)
T COG1132 236 ALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEV 315 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 66655666666666677777888889999999999999999999999999999999999999999999999999986654
Q ss_pred cCCCCCCCCCCCCcceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeC
Q 007122 444 QDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI 523 (617)
Q Consensus 444 ~~~~~~~~~~~~~~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i 523 (617)
.+.... .....++|+|+||+|+|++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+
T Consensus 316 ~~~~~~--~~~~~~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI 393 (567)
T COG1132 316 EDPPDP--LKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDI 393 (567)
T ss_pred cCCCCC--CCCCCCeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEeh
Confidence 333221 222345799999999999888999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 524 CEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 524 ~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
++++.+++|++|++|||||+||+|||+|||++|+|+++|||+++||+.|+++|||+++|+||||+|||+|.+||||||||
T Consensus 394 ~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQr 473 (567)
T COG1132 394 RDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQR 473 (567)
T ss_pred hhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
||||||+++|||||
T Consensus 474 laiARall~~~~IL 487 (567)
T COG1132 474 LAIARALLRNPPIL 487 (567)
T ss_pred HHHHHHHhcCCCEE
Confidence 99999999999986
No 15
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-74 Score=585.95 Aligned_cols=419 Identities=57% Similarity=0.886 Sum_probs=396.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007122 199 RTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKF 278 (617)
Q Consensus 199 r~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~ 278 (617)
|..++..+++...+.+.-+.|.|++++++.|+.++.+|.+.+.+.++++.++.+...++.+++|.++++..++++++..+
T Consensus 2 r~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~ 81 (497)
T COG5265 2 RDRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY 81 (497)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 45567777778888899999999999999999999999999999999999999999999999999999999998999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q 007122 279 GAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALK 358 (617)
Q Consensus 279 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 358 (617)
+|+++.+.++.+.+|.++...+..|+...++.++++.+++++...|++-|.+++|.|+.|+++..+|++..+.|.++..+
T Consensus 82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k 161 (497)
T COG5265 82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK 161 (497)
T ss_pred ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence 99988888888888888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007122 359 TQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLE 438 (617)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~~ri~~~l~ 438 (617)
....+.++++++..++......++..+...+..|++|+|+++....++.++..|++.++..+.++.++...+++.+++++
T Consensus 162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 99999999999999999999988899889999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCC-CCCcceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEE
Q 007122 439 EKADIQDRDNAMPLN-LKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517 (617)
Q Consensus 439 ~~~~~~~~~~~~~~~-~~~~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~ 517 (617)
.+.+..+.+..++.+ ...+.|.|+||+|.|.+.+|+|+++||++++|+++|+||+||+||||+.++|.||||+++|.|.
T Consensus 242 ~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~ 321 (497)
T COG5265 242 VEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSIT 321 (497)
T ss_pred cchhhccCCCCccccccccceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEE
Confidence 877665555555554 3457899999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCC
Q 007122 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLS 597 (617)
Q Consensus 518 idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LS 597 (617)
+||+|++++..+++|+.||+||||..||++||..||.||+|++++||++.|++.|++++||+++|+||||.|||+|..||
T Consensus 322 id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklS 401 (497)
T COG5265 322 IDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLS 401 (497)
T ss_pred EcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCC
Q 007122 598 GGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 598 GGQrQRlaiARAll~~p~IL 617 (617)
||||||+||||+++|+|+||
T Consensus 402 ggekqrvaiar~ilk~p~il 421 (497)
T COG5265 402 GGEKQRVAIARTILKNPPIL 421 (497)
T ss_pred CchHHHHHHHHHHhcCCCEE
Confidence 99999999999999999986
No 16
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=2.9e-71 Score=619.14 Aligned_cols=477 Identities=23% Similarity=0.321 Sum_probs=375.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 125 LRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFS 204 (617)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~~~ 204 (617)
+.+.+.+++.++.+++.+..|+++++++|.+....... ..+.... ..++... ++..++.+++.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~------~~~~~~~----~~~~~~~---~~~~~~~~~~~~~~~ 69 (529)
T TIGR02857 3 RALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPL------AELLPAL----GALALAV---LLRALLGWLGERAAA 69 (529)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCh------HHHHHHH----HHHHHHH---HHHHHHHHHHHHHHH
Confidence 34556666777788899999999999999874111110 0111110 1111111 123456778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 007122 205 KVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAW 284 (617)
Q Consensus 205 ~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~~ 284 (617)
++..++..++|.++|+|++++|..+|+++++|++.+++++|.+.++......+..++..++.+++ ..++++.++|.+++
T Consensus 70 ~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~~ 148 (529)
T TIGR02857 70 RAAAAVKSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLA-ILAAVFPADWISGL 148 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999988888877776544333333333222222 22334445666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 285 ITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLA 364 (617)
Q Consensus 285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (617)
++++.+++..++.....+..++..++..+..++..+.+.|.++|+++||+|+.|+++.++|++..+++.+...+..+...
T Consensus 149 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (529)
T TIGR02857 149 ILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAF 228 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555444444444444555555556666777888999999999999999999999999999999888888777766655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 007122 365 FLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQ 444 (617)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 444 (617)
.......++.......+++++++.+.+|.+|+|.++++..++..+..|+..+...+..++++..+++|+.++++.+++..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~ 308 (529)
T TIGR02857 229 LSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLA 308 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 55554444433333333445666777999999999999999999999999999999999999999999999998543221
Q ss_pred CCCCCCCCCCCCcceEEEeEEEeecCC-cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeC
Q 007122 445 DRDNAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI 523 (617)
Q Consensus 445 ~~~~~~~~~~~~~~I~~~nvsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i 523 (617)
+. ...+ ....+.|+++||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+
T Consensus 309 ~~-~~~~-~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i 386 (529)
T TIGR02857 309 GK-APVT-AAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPL 386 (529)
T ss_pred CC-cCCC-CCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeh
Confidence 11 1111 1122479999999999864 4899999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 524 CEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 524 ~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
++++.+++|++++||||||++|++||+|||++++|+++|++++++++.++++++|+++|+||||++||+|.+||||||||
T Consensus 387 ~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qr 466 (529)
T TIGR02857 387 ADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQR 466 (529)
T ss_pred hhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHH
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
|+||||+++||+||
T Consensus 467 i~laRal~~~~~il 480 (529)
T TIGR02857 467 LALARAFLRDAPLL 480 (529)
T ss_pred HHHHHHHhcCCCEE
Confidence 99999999999985
No 17
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=7.9e-71 Score=622.70 Aligned_cols=488 Identities=28% Similarity=0.378 Sum_probs=386.6
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 007122 108 FRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGI 187 (617)
Q Consensus 108 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 187 (617)
++.++++++ ++++.++.++++.++..+.....|++++.++|.+.... .. ..+..+. ..++.+.+
T Consensus 13 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~~-----~~~~~~~----~~~~~~~l 76 (582)
T PRK11176 13 FRRLWPTIA-----PFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKA--DR-----SVLKWMP----LVVIGLMI 76 (582)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--ch-----hHHHHHH----HHHHHHHH
Confidence 444555554 33555566666666666777788999999999775211 10 0111110 11111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 007122 188 ARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEI 267 (617)
Q Consensus 188 ~~~~~~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 267 (617)
+..++.+++.++..+++.++...+|.++|++++++|..+|+++++|++.+++++|.+.+..........++..++.+
T Consensus 77 ---~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~ 153 (582)
T PRK11176 77 ---LRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASI 153 (582)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22345566677778888899999999999999999999999999999999888777777655444344444444433
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHH
Q 007122 268 SMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDE 347 (617)
Q Consensus 268 ~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~ 347 (617)
++.+ ++++.++|.++++.++++++..++.....+..++..++..+...+..+.+.|.++|+++||+++.|+.+.++|++
T Consensus 154 ~~~~-~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~ 232 (582)
T PRK11176 154 IGLF-IMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDK 232 (582)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHH
Confidence 3332 233445676666666655555555555556666666666677778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 348 FLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSL 427 (617)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~ 427 (617)
..+++.+...+..+.......+..++.......+++++++.+.+|.+|+|+++++..++..+..|+..+...+..++++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 312 (582)
T PRK11176 233 VSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGM 312 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888777666666655555555555666678888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccCCCCCCCCCCCCcceEEEeEEEeecC-CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHh
Q 007122 428 VDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (617)
Q Consensus 428 ~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~nvsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~ 506 (617)
.+++|+.++++.+++.+.... ..++..+.|+++||+|+|++ ++++|+|+||+|+|||++||||+||||||||+++|+
T Consensus 313 ~~~~ri~~~~~~~~~~~~~~~--~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~ 390 (582)
T PRK11176 313 AACQTLFAILDLEQEKDEGKR--VIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLT 390 (582)
T ss_pred HHHHHHHHHhcCCCcCCCCCc--CCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHH
Confidence 999999999876543221111 11122347999999999985 468999999999999999999999999999999999
Q ss_pred cCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCC-CCHHHHHHHHHHHcHHHHHHhCCCCc
Q 007122 507 RSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS-ATEEEVYDAARRAAIHDTIMNFPAKY 585 (617)
Q Consensus 507 gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~-~~de~i~~a~~~a~l~~~I~~lp~Gl 585 (617)
|+|+|++|+|++||+|+++++.+++|++|+||||||++|+|||+|||++++++ .+||+++++++.+++++++++||+|+
T Consensus 391 gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gl 470 (582)
T PRK11176 391 RFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGL 470 (582)
T ss_pred hccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999764 79999999999999999999999999
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 586 STVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 586 dT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
||.+||+|.+|||||||||+||||++++|+||
T Consensus 471 dt~ig~~g~~LSGGqrQRi~LARall~~~~il 502 (582)
T PRK11176 471 DTVIGENGVLLSGGQRQRIAIARALLRDSPIL 502 (582)
T ss_pred CceeCCCCCcCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999999999999999999985
No 18
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.4e-71 Score=671.08 Aligned_cols=488 Identities=25% Similarity=0.335 Sum_probs=370.4
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 007122 108 FRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGI 187 (617)
Q Consensus 108 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 187 (617)
++.++++++ ++++.+++++++.++..+...+.|++++.++|.+.... . .........+ .++++++
T Consensus 813 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~--~~~~~~~~~l------~~~~~~i 877 (1466)
T PTZ00265 813 LRIVYREIF-----SYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFA--N--LEANSNKYSL------YILVIAI 877 (1466)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--H--HHHHHHHHHH------HHHHHHH
Confidence 344555554 23445666666666777788889999999999764211 0 0000111111 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc--cCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 007122 188 ARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLS--RETGALNRIIDRGSRAINFILSSMVFNVVPTIL 265 (617)
Q Consensus 188 ~~~~~~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~--~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ 265 (617)
+..++.+++.+++.+++.++..++|.++|++++++|+.||++ +++|++.+++++|...+.......+..++..++
T Consensus 878 ---~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~ 954 (1466)
T PTZ00265 878 ---AMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIV 954 (1466)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 224566778889999999999999999999999999999986 789999999998888877665544444444444
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-----------------HHHHHHHHHHHHHHHHc
Q 007122 266 EISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTK-FRKA-----------------MNKADNDASTRAIDSLI 327 (617)
Q Consensus 266 ~~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~-~~~~-----------------~~~~~~~~~~~~~e~l~ 327 (617)
.+++. +++++.++|.+++++++ +++++...+.+..+. ..++ ..+..++.+..+.|.+.
T Consensus 955 ~~i~~-~~~~~~~~~~l~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~ 1030 (1466)
T PTZ00265 955 LFLVS-MVMSFYFCPIVAAVLTG---TYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFY 1030 (1466)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHh
Confidence 33322 23344455554444322 222222222221111 1111 11224456778899999
Q ss_pred cHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Q 007122 328 NYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLF 407 (617)
Q Consensus 328 ~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~ 407 (617)
|+++||+|+.|+++.++|++..+.+.+...+.....+....+...+.....++++++|++++.+|.+|+|+++++..++.
T Consensus 1031 gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~ 1110 (1466)
T PTZ00265 1031 NMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFL 1110 (1466)
T ss_pred cHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999998888777766666555555554455555667778899999999999999999876655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC-CCCC---CCCCCcceEEEeEEEeecC--CcccceeeeEE
Q 007122 408 QLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQDRD-NAMP---LNLKGGSIQFDNVHFSYLT--ERKILDGVSFV 481 (617)
Q Consensus 408 ~l~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~---~~~~~~~I~~~nvsF~Y~~--~~~vL~~isl~ 481 (617)
....++..+...+..++++.++.+|+.++++.+++.+..+ .... .+...+.|+|+||+|+||+ +.+||+|+||+
T Consensus 1111 ~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~ 1190 (1466)
T PTZ00265 1111 FTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFS 1190 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEE
Confidence 5556788889999999999999999999998765332111 1111 1112357999999999984 45899999999
Q ss_pred EeCCcEEEEECCCcchHHHHHHHHhcCCCC--------------------------------------------------
Q 007122 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFDT-------------------------------------------------- 511 (617)
Q Consensus 482 I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p-------------------------------------------------- 511 (617)
|+||+++||||+||||||||++||+|||+|
T Consensus 1191 i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1270 (1466)
T PTZ00265 1191 CDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDS 1270 (1466)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999
Q ss_pred ----CCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccc
Q 007122 512 ----HSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYST 587 (617)
Q Consensus 512 ----~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT 587 (617)
++|+|++||+|+++++.+++|++|+||||||+||+|||||||+||+|+++||++++||+.|+++|||++||+||||
T Consensus 1271 ~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT 1350 (1466)
T PTZ00265 1271 TVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDT 1350 (1466)
T ss_pred ccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 588 VVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 588 ~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
.|||+|.+|||||||||||||||+|||+||
T Consensus 1351 ~VGe~G~~LSGGQkQRIaIARALlr~p~IL 1380 (1466)
T PTZ00265 1351 NVGPYGKSLSGGQKQRIAIARALLREPKIL 1380 (1466)
T ss_pred ccCCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999999999999986
No 19
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=8.6e-71 Score=619.17 Aligned_cols=489 Identities=19% Similarity=0.256 Sum_probs=383.5
Q ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007122 110 TLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIAR 189 (617)
Q Consensus 110 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~ 189 (617)
.++++++ ++++.+++++++.++..+..+..|+++++++|.......... ... ..... ...++++.+.
T Consensus 6 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~-~~~-~~~~~-----~~~~~~~~~~- 72 (574)
T PRK11160 6 PFLKLYK-----RHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGL-YSF-NYMLP-----AAGVRGAAIG- 72 (574)
T ss_pred HHHHHHh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-hhH-HHHhH-----HHHHHHHHHH-
Confidence 3455554 346667778888888888999999999999997632111000 000 00000 1111122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 190 TTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISM 269 (617)
Q Consensus 190 ~~~~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 269 (617)
..++.++..++..+...++..++|.++|+|++++|..+|+++++|++.+++++|.+.++.+.......++..++.+++
T Consensus 73 --~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~ 150 (574)
T PRK11160 73 --RTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILV 150 (574)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245666777888899999999999999999999999999999999999999888888877665544444444433322
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHH
Q 007122 270 VSGILAYKFGAPFAWITSLSVVAYVV-FTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEF 348 (617)
Q Consensus 270 ~~~il~~~~~~~l~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~ 348 (617)
. .++++.++|.++++++++++++.+ +.....+..++..++.++..++.++.+.|.++|+++||+|+.|+++.++|++.
T Consensus 151 ~-~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~ 229 (574)
T PRK11160 151 L-TIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQT 229 (574)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHH
Confidence 2 234455677777665555443333 22334455455566667778888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 007122 349 LRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQ-LSLPLNFLGSVYRETVQSL 427 (617)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~-l~~pl~~l~~~~~~~~~~~ 427 (617)
.+++.+...+..+..........++.......++++|++. .+|.+|+|.++++..+... ...|+..+...+..++++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~ 308 (574)
T PRK11160 230 EQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVI 308 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888877666555555444444444555667776 4899999999998877644 4468888889999999999
Q ss_pred HHHHHHHHHhcccccccCCCCCCCCCCCCcceEEEeEEEeecCC-cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHh
Q 007122 428 VDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (617)
Q Consensus 428 ~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~nvsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~ 506 (617)
.+++|+.++++.+++.++.....+. ...+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+
T Consensus 309 ~s~~ri~~ll~~~~~~~~~~~~~~~-~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~ 387 (574)
T PRK11160 309 ASARRINEITEQKPEVTFPTTSTAA-ADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT 387 (574)
T ss_pred HHHHHHHHHHhCCCCCCCCcccCCC-CCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 9999999999876543221111111 123579999999999864 58999999999999999999999999999999999
Q ss_pred cCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCcc
Q 007122 507 RSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYS 586 (617)
Q Consensus 507 gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~Gld 586 (617)
|+|+|++|+|++||+|+++++.+++|++|+||||||+||++||+|||++++|+.+||+++++++.+++++++++ |+|||
T Consensus 388 g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~Gld 466 (574)
T PRK11160 388 RAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLN 466 (574)
T ss_pred cCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 587 TVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 587 T~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
|.|||+|.+|||||||||+||||+++||+||
T Consensus 467 T~vge~g~~LSgGqrqRialARall~~~~il 497 (574)
T PRK11160 467 AWLGEGGRQLSGGEQRRLGIARALLHDAPLL 497 (574)
T ss_pred chhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999999999999999985
No 20
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.7e-70 Score=617.89 Aligned_cols=477 Identities=24% Similarity=0.324 Sum_probs=369.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 123 FRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAV 202 (617)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~ 202 (617)
+++.++..+++.++.+++.+..|++++.++|.+..... .. .. .+++ .++.+.+..++..++.+++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-~~------~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~ 88 (592)
T PRK10790 21 WRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGN-LP------LG-LVAG----LAAAYVGLQLLAAGLHYAQSLL 88 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cc------hh-HHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666677888888999999999998753211 00 00 0010 0011111112234567778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 007122 203 FSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPF 282 (617)
Q Consensus 203 ~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l 282 (617)
..++..++..++|.++|++++++|..+|+++++|++.+++++|.+.+..........++..++.++. ..++++.++|++
T Consensus 89 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l 167 (592)
T PRK10790 89 FNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGA-MLVAMFSLDWRM 167 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888887776654444444444332222 223344456666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 283 AWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRS 362 (617)
Q Consensus 283 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 362 (617)
+++.++++++.+++.....+..++..++..+..++..+.+.|.++|+++||+|+.|+++.++|.+..+++.+...+..+.
T Consensus 168 ~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (592)
T PRK10790 168 ALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRL 247 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555554444444444444445555555566677788899999999999999999999999999888777776665554
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 007122 363 LAFL-NFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKA 441 (617)
Q Consensus 363 ~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 441 (617)
.... .....++..+...++++++++ +..|.+++|.++++..++..+..|+..+...+..++++..+++|+.++++.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 326 (592)
T PRK10790 248 DGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPR 326 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3322 222222222222222233333 57899999999999999999999999999999999999999999999998654
Q ss_pred cccCCCCCCCCCCCCcceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCE
Q 007122 442 DIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ 521 (617)
Q Consensus 442 ~~~~~~~~~~~~~~~~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~ 521 (617)
+..... . .+...+.|+|+||+|+|++++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+
T Consensus 327 ~~~~~~-~--~~~~~~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~ 403 (592)
T PRK10790 327 QQYGND-D--RPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGR 403 (592)
T ss_pred ccCCCC-c--cCCCCCeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCE
Confidence 321111 1 1122357999999999986678999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHH
Q 007122 522 DICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEK 601 (617)
Q Consensus 522 ~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQr 601 (617)
|+++++++++|++|+||||||++|+|||+|||++++ +++|++++++++.++++++|++||+||||.+||+|.+||||||
T Consensus 404 ~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqr 482 (592)
T PRK10790 404 PLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQK 482 (592)
T ss_pred EhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence 999999999999999999999999999999999998 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCC
Q 007122 602 QRVALARAFLKAPPIL 617 (617)
Q Consensus 602 QRlaiARAll~~p~IL 617 (617)
|||+|||||++||+||
T Consensus 483 QRialARaLl~~~~il 498 (592)
T PRK10790 483 QLLALARVLVQTPQIL 498 (592)
T ss_pred HHHHHHHHHHhCCCEE
Confidence 9999999999999985
No 21
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=7e-70 Score=614.00 Aligned_cols=479 Identities=28% Similarity=0.416 Sum_probs=391.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 122 EFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTA 201 (617)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~ 201 (617)
++++.+++++++.++.+++.+..|++++.++|....... . ..+..+ ...+++.. ++..++.+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~------~~~~~~----~~~~~~~~---i~~~~~~~~~~~ 76 (571)
T TIGR02203 11 PYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD-R------SVLWWV----PLVVIGLA---VLRGICSFVSTY 76 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-h------hHHHHH----HHHHHHHH---HHHHHHHHHHHH
Confidence 345667777777778888888999999999997653211 1 111110 00111111 123456777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007122 202 VFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAP 281 (617)
Q Consensus 202 ~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~ 281 (617)
+..+...++...+|..+|+++++.|.+++++.++|++.++++.|.+.+.......+..++..++.+++.+ ++++.++|+
T Consensus 77 ~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~ 155 (571)
T TIGR02203 77 LLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLF-IVLLYYSWQ 155 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHH
Confidence 8999999999999999999999999999999999999988887777776655443444443333333322 344456777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 282 FAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQR 361 (617)
Q Consensus 282 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 361 (617)
++++.++++++.+++.....+..++..++..+..++..+.+.|.++|+++||.++.|+++.++|++..+++.+...+..+
T Consensus 156 l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (571)
T TIGR02203 156 LTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTS 235 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776666666666666666666666777777888899999999999999999999999999999999999888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 007122 362 SLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKA 441 (617)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 441 (617)
.......+..++......+++++|++.+.+|.+|+|.++++..++..+..|+..+...+..++++..+.+|+.++++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 315 (571)
T TIGR02203 236 AGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPP 315 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 66666665555555555666677888899999999999999999999999999999999999999999999999998755
Q ss_pred cccCCCCCCCCCCCCcceEEEeEEEeecC-CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECC
Q 007122 442 DIQDRDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (617)
Q Consensus 442 ~~~~~~~~~~~~~~~~~I~~~nvsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG 520 (617)
+.+.... +.....+.|+++||+|+|++ ++++|+|+||+|+|||+++|||+||||||||+++|+|+|+|++|+|++||
T Consensus 316 ~~~~~~~--~~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g 393 (571)
T TIGR02203 316 EKDTGTR--AIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDG 393 (571)
T ss_pred CCCCCCC--CCCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECC
Confidence 4322111 11112357999999999985 46899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCC-CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChH
Q 007122 521 QDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL-SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGG 599 (617)
Q Consensus 521 ~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~-~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGG 599 (617)
+|+++++.+++|++++||||||++|+|||||||+++++ +.++++++++++.+++++++.+||+|+||+|||+|.+||||
T Consensus 394 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 473 (571)
T TIGR02203 394 HDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473 (571)
T ss_pred EeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence 99999999999999999999999999999999999986 79999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 007122 600 EKQRVALARAFLKAPPIL 617 (617)
Q Consensus 600 QrQRlaiARAll~~p~IL 617 (617)
|||||+||||++++|+||
T Consensus 474 qrQRiaLARall~~~~il 491 (571)
T TIGR02203 474 QRQRLAIARALLKDAPIL 491 (571)
T ss_pred HHHHHHHHHHHhcCCCEE
Confidence 999999999999999985
No 22
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=2.6e-69 Score=610.19 Aligned_cols=487 Identities=30% Similarity=0.380 Sum_probs=377.1
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 007122 108 FRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGI 187 (617)
Q Consensus 108 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 187 (617)
++.+.++++ +++..+++.+++.++..++.+..|++++.++|.+... .. .....+.. ++. ++
T Consensus 7 ~~~l~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~---~~-----~~~~~~~~--~~~----~~ 67 (588)
T PRK13657 7 YARVLQYLG-----AEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGK---GD-----IFPLLAAW--AGF----GL 67 (588)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cc-----HHHHHHHH--HHH----HH
Confidence 444555554 3355566667677778888999999999999987431 10 11010000 001 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 007122 188 ARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEI 267 (617)
Q Consensus 188 ~~~~~~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 267 (617)
. ..+..++...+..+...++...++.++|+|++++|..+|.+.++|++.+++++|.+.+.......+...+..++..
T Consensus 68 ~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~ 144 (588)
T PRK13657 68 F---NIIAGVLVARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVAL 144 (588)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1123334444555666666777888999999999999999999999988888776666544333333333333222
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHH
Q 007122 268 SMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDE 347 (617)
Q Consensus 268 ~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~ 347 (617)
++ ..++++.++|+++++++++++++.++...+.+..++..++..+..++..+.+.|.+.|+++||.|+.++.+.++|.+
T Consensus 145 ~~-~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~ 223 (588)
T PRK13657 145 VV-LLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRD 223 (588)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHH
Confidence 21 22333445666666655555555555554555555556666667778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 348 FLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSL 427 (617)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~ 427 (617)
..++..+...+..+..........++..+....++++|++.+.+|.+|+|+++++..++..+..|+..+...+..+..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~ 303 (588)
T PRK13657 224 IADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAA 303 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888777766655554444444444555666778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccCCCCCCCCCCCCcceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhc
Q 007122 428 VDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 428 ~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~g 507 (617)
.+++|+.++++.+++.+......+.....+.|+++||+|+|++++++|+|+||+|+|||+++|||+||||||||+|+|+|
T Consensus 304 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 304 PKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred HHHHHHHHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 99999999987654322111111111123479999999999865789999999999999999999999999999999999
Q ss_pred CCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccc
Q 007122 508 SFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYST 587 (617)
Q Consensus 508 l~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT 587 (617)
+|+|++|+|++||+|+++++.+++|++|+||||||++|+|||||||++++|+++||+++++++.++++++++++|+|+||
T Consensus 384 l~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt 463 (588)
T PRK13657 384 VFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDT 463 (588)
T ss_pred CcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 588 VVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 588 ~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
.+||+|.+|||||||||+||||++++|+||
T Consensus 464 ~i~~~g~~LSgGq~QRialARall~~~~il 493 (588)
T PRK13657 464 VVGERGRQLSGGERQRLAIARALLKDPPIL 493 (588)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999999999999985
No 23
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.6e-68 Score=601.69 Aligned_cols=487 Identities=27% Similarity=0.382 Sum_probs=385.4
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 007122 108 FRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGI 187 (617)
Q Consensus 108 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 187 (617)
++.++++++ ++|+.++..+++.++..++.+..|++++.++|.+... +. . ...++. .+...+
T Consensus 7 ~~~l~~~l~-----~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~--~~------~-~~~~~~-----~~~~~~ 67 (585)
T TIGR01192 7 YVRALSYLN-----VHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSK--SD------V-LPTLAL-----WAGFGV 67 (585)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cc------H-HHHHHH-----HHHHHH
Confidence 445666664 4566777777787888899999999999999986421 11 0 000000 001111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 007122 188 ARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEI 267 (617)
Q Consensus 188 ~~~~~~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 267 (617)
+..+..+++..+..++..++..++|.++|+|++++|+.||+++++|++.+++++|.+.+.......+..++..++.+
T Consensus 68 ---~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~ 144 (585)
T TIGR01192 68 ---FNTIAYVLVAREADRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVAL 144 (585)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11234445556666777777788888999999999999999999999998888887777655444444444433332
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHH
Q 007122 268 SMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDE 347 (617)
Q Consensus 268 ~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~ 347 (617)
++. .++++.++|.++++.++++++++++...+.+..++..++..+..++..+.+.|.++|+++||+|+.|+.+.++|++
T Consensus 145 ~~~-~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~ 223 (585)
T TIGR01192 145 FLL-IPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQ 223 (585)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHH
Confidence 222 2334456777777766666655555555555555556666667778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 348 FLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSL 427 (617)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~ 427 (617)
..+++.+...+..+..........++.......++++|++++.+|.+|+|+++++..++..+..|+..+...+..+..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~ 303 (585)
T TIGR01192 224 FTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEAR 303 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888877777666555554444444444455566678888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccCCCCCCCCCCCCcceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhc
Q 007122 428 VDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 428 ~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~g 507 (617)
.+++|+.++++.+++.++.......+...+.|+++||+|+|++++++|+|+||+|++||++||||+||||||||+++|+|
T Consensus 304 ~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g 383 (585)
T TIGR01192 304 AKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQR 383 (585)
T ss_pred HHHHHHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHcc
Confidence 99999999988654322211111111123479999999999866689999999999999999999999999999999999
Q ss_pred CCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccc
Q 007122 508 SFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYST 587 (617)
Q Consensus 508 l~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT 587 (617)
+|+|++|+|.+||+|+++++.+++|++++||||||++|++||+|||++++|++++++++++++.+++++++.++|+|+||
T Consensus 384 ~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t 463 (585)
T TIGR01192 384 VYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDT 463 (585)
T ss_pred CCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred cccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 588 VVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 588 ~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
.+||+|.+|||||||||+|||||+++|+||
T Consensus 464 ~~~~~~~~LSgGq~qrl~lARall~~p~il 493 (585)
T TIGR01192 464 LVGERGNRLSGGERQRLAIARAILKNAPIL 493 (585)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999999999999985
No 24
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.7e-68 Score=601.53 Aligned_cols=490 Identities=28% Similarity=0.418 Sum_probs=383.1
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 007122 108 FRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGI 187 (617)
Q Consensus 108 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 187 (617)
++.++++++ ++++.+.+.+++.++..++.+..|++++.++|.+..... . ..+..++. ..+++.+
T Consensus 6 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~-~------~~~~~~~~----~~~~~~~ 69 (576)
T TIGR02204 6 LAALWPFVR-----PYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS-S------GLLNRYFA----FLLVVAL 69 (576)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc-H------HHHHHHHH----HHHHHHH
Confidence 445555654 335566667777777888999999999999998542211 0 11111111 0111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 007122 188 ARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEI 267 (617)
Q Consensus 188 ~~~~~~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 267 (617)
+..++.+.+.++..++..++...+|..+|++++++|..+|++.++|++.+++++|.+.+..+.......++..++.+
T Consensus 70 ---~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~ 146 (576)
T TIGR02204 70 ---VLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMC 146 (576)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12345567778888999999999999999999999999999999999988888777777665443333333333222
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHH
Q 007122 268 SMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDE 347 (617)
Q Consensus 268 ~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~ 347 (617)
++ ..++++.++|++++++++.+++.+++.....+..++..++..+..++..+.+.|.++|+++||.++.|+++.++|++
T Consensus 147 ~~-~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~ 225 (576)
T TIGR02204 147 IG-GLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGG 225 (576)
T ss_pred HH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHH
Confidence 22 22334445666666665555544444444555555666666677778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 348 FLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSL 427 (617)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~ 427 (617)
..+++.+...+..+...........+.....+.++++|++.+.+|.+|+|+++++..++..+..|+..+...+.++..+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~ 305 (576)
T TIGR02204 226 AVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAA 305 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877766665544444443333333444555678888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccCCCCCC-CCCCCCcceEEEeEEEeecC-C-cccceeeeEEEeCCcEEEEECCCcchHHHHHHH
Q 007122 428 VDMKSMFQLLEEKADIQDRDNAM-PLNLKGGSIQFDNVHFSYLT-E-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRL 504 (617)
Q Consensus 428 ~~~~ri~~~l~~~~~~~~~~~~~-~~~~~~~~I~~~nvsF~Y~~-~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~L 504 (617)
.+++|+.++++.+++.+...... ...+..+.|+++||+|+|++ + +++|+|+||+|+|||+++|||+||||||||+|+
T Consensus 306 ~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlkl 385 (576)
T TIGR02204 306 GAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQL 385 (576)
T ss_pred HHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHH
Confidence 99999999998654422111111 11112347999999999984 2 689999999999999999999999999999999
Q ss_pred HhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCC
Q 007122 505 LFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAK 584 (617)
Q Consensus 505 L~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~G 584 (617)
|+|+|+|++|+|++||+|+++++.+++|++|+||||||++|+|||+|||++++|+.+|++++++++.++++++++++|+|
T Consensus 386 L~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~g 465 (576)
T TIGR02204 386 LLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEG 465 (576)
T ss_pred HHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred ccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 585 YSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 585 ldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
+||++||+|.+|||||||||+||||++++|+||
T Consensus 466 l~t~i~~~g~~LSgGq~Qrl~laRal~~~~~il 498 (576)
T TIGR02204 466 YDTYLGERGVTLSGGQRQRIAIARAILKDAPIL 498 (576)
T ss_pred CCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeE
Confidence 999999999999999999999999999999985
No 25
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-68 Score=562.24 Aligned_cols=423 Identities=24% Similarity=0.310 Sum_probs=363.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 193 SAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSG 272 (617)
Q Consensus 193 ~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 272 (617)
.++.+++.....+.+.++...+|.++++|+.++++.+-.+.++|+..+++.+..+.++.++..+......+.+.-. ++.
T Consensus 54 a~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~-~i~ 132 (559)
T COG4988 54 AFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPL-LIL 132 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 4667788888889999999999999999999999999999999999999988888888777666555544433222 222
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHHHH
Q 007122 273 ILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRY 352 (617)
Q Consensus 273 il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~ 352 (617)
+.++.++|..++++++.++++.++++.+....++..+++.+.....++.+.|.++|+.|+|+|+..+...++..+..+++
T Consensus 133 i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~f 212 (559)
T COG4988 133 IAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDF 212 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHH
Confidence 33445677777788888887777777777777777777778888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 353 EDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILS-GEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMK 431 (617)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~~ 431 (617)
++..++.-+..-.......++.....+.+.++.+..... |++|....+.++.+...+..|+..++..++..+++.++.+
T Consensus 213 R~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d 292 (559)
T COG4988 213 RKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAAD 292 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 999998877654445555555545555555555555666 8999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccccCCCCC-CCCCCCCcceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC
Q 007122 432 SMFQLLEEKADIQDRDNA-MPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (617)
Q Consensus 432 ri~~~l~~~~~~~~~~~~-~~~~~~~~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~ 510 (617)
.+..+++.+++..+.... ...+....+|+++|++|+||+++++++|+||+++||+++||||+||||||||+++|+|+++
T Consensus 293 ~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~ 372 (559)
T COG4988 293 KLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA 372 (559)
T ss_pred HHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC
Confidence 999999987764332221 1222223356667999999988899999999999999999999999999999999999999
Q ss_pred CCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCcccccc
Q 007122 511 THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG 590 (617)
Q Consensus 511 p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vg 590 (617)
|++|+|.+||+|+++++.++||+++++|||+|+||+|||||||++++|+.+||+++++++++++.||++. |+|+||++|
T Consensus 373 ~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ig 451 (559)
T COG4988 373 PTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIG 451 (559)
T ss_pred CCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 591 ERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 591 e~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
|+|.+|||||+|||++|||++++++++
T Consensus 452 e~G~~LSgGQ~QRlaLARAll~~~~l~ 478 (559)
T COG4988 452 EGGAGLSGGQAQRLALARALLSPASLL 478 (559)
T ss_pred cCCCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 999999999999999999999999874
No 26
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.9e-68 Score=597.44 Aligned_cols=468 Identities=23% Similarity=0.334 Sum_probs=369.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 135 VAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFSKVALRTIRSV 214 (617)
Q Consensus 135 ~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~~~~~~~~~~~~l 214 (617)
++.+++.+..|++++.++|.+........ .+....+ .+++.. ++..++.+++.++..+...++..++
T Consensus 5 ~~~~~~~~~~p~~~~~iid~~~~~~~~~~------~~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l 71 (569)
T PRK10789 5 IIIAMLQLIPPKVVGIIVDGVTEQHMTTG------QILMWIG----TMVLIA---VVVYLLRYVWRVLLFGASYQLAVEL 71 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcchh------HHHHHHH----HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777889999999997642110100 0111000 111111 1223456677777788899999999
Q ss_pred HHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007122 215 SRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWITSLSVVAYV 294 (617)
Q Consensus 215 ~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~~i~~~~~~~~~ 294 (617)
|.++|+|++++|..+|+++++|++.+++++|.+.+..........++..++..++.++++++.++|.+++++++++++.+
T Consensus 72 r~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~ 151 (569)
T PRK10789 72 REDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMA 151 (569)
T ss_pred HHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888877777654433333333332222222222323566766666665555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 295 VFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIF 374 (617)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (617)
++...+.+...+..++..+..++..+.+.|.+.|+++||+|+.|+.+.++|++..+++.+...+..+.............
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (569)
T PRK10789 152 IMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAI 231 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555666667778889999999999999999999999999999998888887777666555444444333
Q ss_pred HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCC
Q 007122 375 SAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNL 454 (617)
Q Consensus 375 ~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~ 454 (617)
......++++|++++.+|.+|+|+++++..++..+..|+..+...+..++++.++.+|+.++++.+++.++... +.+.
T Consensus 232 ~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~--~~~~ 309 (569)
T PRK10789 232 GMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSE--PVPE 309 (569)
T ss_pred HHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCC--CCCC
Confidence 34444555678888999999999999999999999999999999999999999999999999987644222111 1111
Q ss_pred CCcceEEEeEEEeecC-CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhc
Q 007122 455 KGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533 (617)
Q Consensus 455 ~~~~I~~~nvsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~ 533 (617)
..+.|+++||+|+|++ ++++|+|+||+|+||++++||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|+
T Consensus 310 ~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~ 389 (569)
T PRK10789 310 GRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRS 389 (569)
T ss_pred CCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHh
Confidence 2347999999999985 468999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCC
Q 007122 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (617)
Q Consensus 534 ~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~ 613 (617)
+++||||+|++|++||+|||++++|+.++++++++++.+++++++.++|+|+||.+||+|.+|||||||||+||||++++
T Consensus 390 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~ 469 (569)
T PRK10789 390 RLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLN 469 (569)
T ss_pred heEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 007122 614 PPIL 617 (617)
Q Consensus 614 p~IL 617 (617)
|+||
T Consensus 470 ~~il 473 (569)
T PRK10789 470 AEIL 473 (569)
T ss_pred CCEE
Confidence 9985
No 27
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.3e-69 Score=613.79 Aligned_cols=424 Identities=29% Similarity=0.413 Sum_probs=358.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 193 SAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSG 272 (617)
Q Consensus 193 ~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 272 (617)
....+++...+.+.+.|...++|.++++.++|++++||+.+.+|++..+++++...++..+..-+..++..+..++ ..+
T Consensus 85 ~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi-~g~ 163 (1228)
T KOG0055|consen 85 FISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFI-AGF 163 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 4566777888899999999999999999999999999999999999988988888877765544444444433332 233
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHHHH
Q 007122 273 ILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRY 352 (617)
Q Consensus 273 il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~ 352 (617)
++.+.++|.++++.+.+.++.++....+.+...+...+.+++.+++.+...|++.+++||.+|+.|+.+.++|.+.++..
T Consensus 164 ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~ 243 (1228)
T KOG0055|consen 164 VIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENA 243 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 45666788888888888888777777777877777777778888999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 353 EDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKS 432 (617)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~~r 432 (617)
.+...+...+.+...-...++.....+..+|+|+.++..+..+.|+++.....+..-...+......+..+..+.++..+
T Consensus 244 ~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~ 323 (1228)
T KOG0055|consen 244 LKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYR 323 (1228)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHH
Confidence 88877776665554433334445566777888988999999999987765444434444455566667788899999999
Q ss_pred HHHHhcccccccCCC-CCCCCCCCCcceEEEeEEEeecC--CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 433 MFQLLEEKADIQDRD-NAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 433 i~~~l~~~~~~~~~~-~~~~~~~~~~~I~~~nvsF~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+++.++..++..... .........+.|+|+||+|+||. +.++|+|+||+|++||++||||+|||||||+++||.|||
T Consensus 324 I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfy 403 (1228)
T KOG0055|consen 324 IFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFY 403 (1228)
T ss_pred HHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 999999877654432 11122223479999999999994 458999999999999999999999999999999999999
Q ss_pred CCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccc
Q 007122 510 DTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVV 589 (617)
Q Consensus 510 ~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~v 589 (617)
+|++|+|++||.|+++++.+++|++||+|.|||.||++||+|||.||+|+++++++.+|+|.|++++||.+||+||||.|
T Consensus 404 dP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~v 483 (1228)
T KOG0055|consen 404 DPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLV 483 (1228)
T ss_pred CCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 590 GERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 590 ge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
||+|..|||||||||||||||++||+||
T Consensus 484 ge~g~qLSGGQKQRIAIARalv~~P~IL 511 (1228)
T KOG0055|consen 484 GERGVQLSGGQKQRIAIARALVRNPKIL 511 (1228)
T ss_pred cCCCCCCChHHHHHHHHHHHHHhCCCEE
Confidence 9999999999999999999999999986
No 28
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.4e-66 Score=582.47 Aligned_cols=471 Identities=24% Similarity=0.286 Sum_probs=366.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 123 FRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAV 202 (617)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~ 202 (617)
+++.++..+++.++..++.+..|++++.++|.+.... +.. .+..+. +.. + +..++..++.+++.++
T Consensus 4 ~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~-~~~------~l~~~~---~~~-~---~~~~~~~~~~~~~~~~ 69 (544)
T TIGR01842 4 NKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSG-SVP------TLLMLT---VLA-L---GLYLFLGLLDALRSFV 69 (544)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-chh------HHHHHH---HHH-H---HHHHHHHHHHHHHHHH
Confidence 3555666777777788899999999999999775221 110 111111 011 1 1111234567788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007122 203 FSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSS-MVFNVVPTILEISMVSGILAYKFGAP 281 (617)
Q Consensus 203 ~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~il~~~~~~~ 281 (617)
..+.+.++..++|.++|+|++++|+..+ +....++.+|.+.++..... ....++..++.++. .++++.++|.
T Consensus 70 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~-----~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~ 142 (544)
T TIGR01842 70 LVRIGEKLDGALNQPIFAASFSATLRRG-----KIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIY--LLVCFLLHPW 142 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccCc-----cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHHHhhH
Confidence 8999999999999999999999998422 33334444555555544322 22222222222211 2334455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 282 FAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQR 361 (617)
Q Consensus 282 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 361 (617)
+++++++.+++++++.....+..++..++..+..++..+.+.|.++|+++||+|+.|+.+.++|++..+++.+...+..+
T Consensus 143 l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 222 (544)
T TIGR01842 143 IGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASD 222 (544)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665555444444444444555555666677777888999999999999999999999999999999988887777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 007122 362 SLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKA 441 (617)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 441 (617)
..........++......+++++|++++.+|.+|+|+++++..++..+..|+..+...+..++++..+.+|+.++++.++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 302 (544)
T TIGR01842 223 RAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYP 302 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 65555444444444444555667888899999999999999999999999999999999999999999999999997655
Q ss_pred cccCCCCCCCCCCCCcceEEEeEEEeecC-CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECC
Q 007122 442 DIQDRDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (617)
Q Consensus 442 ~~~~~~~~~~~~~~~~~I~~~nvsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG 520 (617)
+..+.. +.+...+.|+++||+|+|++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||
T Consensus 303 ~~~~~~---~~~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g 379 (544)
T TIGR01842 303 SRDPAM---PLPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDG 379 (544)
T ss_pred cccCCC---CCCCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 422111 11112347999999999985 46899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHH
Q 007122 521 QDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGE 600 (617)
Q Consensus 521 ~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQ 600 (617)
+|+++++.+++|++++||||||++|++|++|||+++++++++++++++++.++++++++++|+|+||.+||+|.+|||||
T Consensus 380 ~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq 459 (544)
T TIGR01842 380 ADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQ 459 (544)
T ss_pred EehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHH
Confidence 99999999999999999999999999999999998887899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCC
Q 007122 601 KQRVALARAFLKAPPIL 617 (617)
Q Consensus 601 rQRlaiARAll~~p~IL 617 (617)
||||+||||+++||+||
T Consensus 460 ~qrl~lARall~~~~il 476 (544)
T TIGR01842 460 RQRIALARALYGDPKLV 476 (544)
T ss_pred HHHHHHHHHHhcCCCEE
Confidence 99999999999999985
No 29
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.9e-66 Score=634.71 Aligned_cols=419 Identities=18% Similarity=0.238 Sum_probs=325.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 194 AFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGI 273 (617)
Q Consensus 194 ~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i 273 (617)
++.+++.+++...+.+..+++|.++|++++++|+.||+++++|++.+++++|.+.++..+...+..++..++.++..+++
T Consensus 1020 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~ 1099 (1522)
T TIGR00957 1020 FAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIV 1099 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778889999999999999999999999999999999999999888888877655555554444433332222
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHHHHH
Q 007122 274 LAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYE 353 (617)
Q Consensus 274 l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~ 353 (617)
++..+|.+.++++.+++++.++...+.+..+...+......+...+.+.|+++|+++||+|++|+++.+++.+..+...
T Consensus 1100 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~ 1178 (1522)
T TIGR00957 1100 -ILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQ 1178 (1522)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 2223333222222222222122111222222223333345566778999999999999999999999999888877776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 354 DAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGIL-SGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKS 432 (617)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~~r 432 (617)
+..........+......++. ..++++++++.+. .|.+++|.+.+++.++..+..|+..+...+.+++.+.++++|
T Consensus 1179 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eR 1255 (1522)
T TIGR00957 1179 KAYYPSIVANRWLAVRLECVG---NCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVER 1255 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665544333333333322221 1122233444443 588999999999999999999999999999999999999999
Q ss_pred HHHHhcccccccC--CC-CCCCCCCCCcceEEEeEEEeecCC-cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcC
Q 007122 433 MFQLLEEKADIQD--RD-NAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 433 i~~~l~~~~~~~~--~~-~~~~~~~~~~~I~~~nvsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+.++++.+++.+. +. .+.+.++..+.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+
T Consensus 1256 i~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl 1335 (1522)
T TIGR00957 1256 LKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRI 1335 (1522)
T ss_pred HHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 9999976554321 11 111223445789999999999854 5899999999999999999999999999999999999
Q ss_pred CCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCcccc
Q 007122 509 FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTV 588 (617)
Q Consensus 509 ~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~ 588 (617)
|+|++|+|++||+|+++++++++|++|++|||||+||+|||||||.+.. +++|||+++|++.|+++|+|+++|+||||+
T Consensus 1336 ~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~ 1414 (1522)
T TIGR00957 1336 NESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-QYSDEEVWWALELAHLKTFVSALPDKLDHE 1414 (1522)
T ss_pred ccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-CCCHHHHHHHHHHcCcHHHHhhCccCCCce
Confidence 9999999999999999999999999999999999999999999998554 689999999999999999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 589 VGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 589 vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
|||+|.+|||||||||||||||+++|+||
T Consensus 1415 v~e~G~~LSgGQrQrl~LARALLr~~~IL 1443 (1522)
T TIGR00957 1415 CAEGGENLSVGQRQLVCLARALLRKTKIL 1443 (1522)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999986
No 30
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3e-65 Score=623.49 Aligned_cols=487 Identities=18% Similarity=0.237 Sum_probs=332.7
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHH
Q 007122 106 KIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGY 185 (617)
Q Consensus 106 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (617)
..++.++.|++... ..+...+.+++.+...++.+..+++++...|..... ... .....+ + |
T Consensus 899 v~~~vy~~Y~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~--~~~-----~~~~~~------i---~ 959 (1622)
T PLN03130 899 VSWKVLERYKNALG---GAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPK--THG-----PLFYNL------I---Y 959 (1622)
T ss_pred cCHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC--CCc-----hhHHHH------H---H
Confidence 34667777775321 122223333334445566666777777666642211 000 111100 0 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 007122 186 GIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTIL 265 (617)
Q Consensus 186 ~i~~~~~~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ 265 (617)
++..++..++..++.+++...+.+...++|.++|++++++|+.||+++++|++.+|+++|...++......+..++..++
T Consensus 960 ~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~ 1039 (1622)
T PLN03130 960 ALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIF 1039 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111234556677888888999999999999999999999999999999999999998888887766555555555554
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHH
Q 007122 266 EISMVSGILAYKFGAPFAWITSLSVVAYVV-FTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQ 344 (617)
Q Consensus 266 ~~~~~~~il~~~~~~~l~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~ 344 (617)
.++..++++.+ ..+. .+++++++++.+. +...+.+..++..+......+...+.+.|+++|+++||+|+.++++.++
T Consensus 1040 ~~i~~~i~i~~-~~~~-~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~ 1117 (1622)
T PLN03130 1040 QLLSTFVLIGI-VSTI-SLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEI 1117 (1622)
T ss_pred HHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHH
Confidence 44333222222 2221 1211111111111 1111111122222222234456778899999999999999999877766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cC-----HHHHHHHHHHHHHHHHHHHHHHH
Q 007122 345 YDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGE-MT-----VGDLVMVNGLLFQLSLPLNFLGS 418 (617)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~-lt-----~G~l~~~~~~~~~l~~pl~~l~~ 418 (617)
+.+..+...+..........+......++ ....+++.+.+.+..+. .+ .+.+..+++++..+..++..+..
T Consensus 1118 ~~~~~~~~~~~~~~~~~~~~wl~~~l~~~---~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~ 1194 (1622)
T PLN03130 1118 NGRSMDNNIRFTLVNMSSNRWLAIRLETL---GGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLR 1194 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655444333222111111111111111 11111122333333321 11 23333344456667777788888
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccCC---CCCCCCCCCCcceEEEeEEEeecCC-cccceeeeEEEeCCcEEEEECCC
Q 007122 419 VYRETVQSLVDMKSMFQLLEEKADIQDR---DNAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTS 494 (617)
Q Consensus 419 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~~~~~~~~I~~~nvsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~S 494 (617)
.+..++.+..+++|+.++++.+++.+.. ..+.+.++..+.|+|+||+|+|+++ ++||+|+||+|+|||+|||||+|
T Consensus 1195 ~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrS 1274 (1622)
T PLN03130 1195 LASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRT 1274 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCC
Confidence 8889999999999999999876543211 1112223445789999999999754 58999999999999999999999
Q ss_pred cchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcH
Q 007122 495 GSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAI 574 (617)
Q Consensus 495 GsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l 574 (617)
|||||||+++|+|+|+|++|+|++||+|+++++++++|++|++|||||+||+|||||||.+++ +.+|||+++|++.|++
T Consensus 1275 GSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l 1353 (1622)
T PLN03130 1275 GAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHL 1353 (1622)
T ss_pred CCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHHHHHHHcCc
Confidence 999999999999999999999999999999999999999999999999999999999999987 5899999999999999
Q ss_pred HHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 575 HDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 575 ~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
+|+|+++|+||||+|||+|.+|||||||||||||||+++|+||
T Consensus 1354 ~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~IL 1396 (1622)
T PLN03130 1354 KDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKIL 1396 (1622)
T ss_pred HHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999999999999999999999999999999999999986
No 31
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-65 Score=530.60 Aligned_cols=477 Identities=21% Similarity=0.330 Sum_probs=365.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 124 RLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVF 203 (617)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~~ 203 (617)
|+.+.+++++.+...+.++..-++.+|+|..-.... . ..... +..+++.+-++++.|.+..++. ....
T Consensus 15 ~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag--~------~~~f~-~~~p~a~VR~~aI~Rt~~RY~E---Rlvs 82 (573)
T COG4987 15 KFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAG--L------AYIFN-VMLPSAGVRGLAILRTAARYVE---RLVS 82 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcc--H------HHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHhh
Confidence 555666666666666666666677888876432111 0 01111 2234566777888886655554 4467
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhh
Q 007122 204 SKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVS--GILAYKFGAP 281 (617)
Q Consensus 204 ~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~il~~~~~~~ 281 (617)
+....++...+|.++|+++...+..-....++||+..++..|.+.++.+. ..-+.|.+..+++.. .+.+-.++|+
T Consensus 83 H~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~ly---LRvi~P~~~a~~~~~~~~i~L~f~~~~ 159 (573)
T COG4987 83 HDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLY---LRVIAPAVVALVLIAVVTIGLSFFSIP 159 (573)
T ss_pred hHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHH---HHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 78999999999999999999999998889999999888877777666553 333334443322221 2223345666
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Q 007122 282 FAWITSLSVVA-YVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQ 360 (617)
Q Consensus 282 l~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 360 (617)
+++.+.+.+.+ .+++.....+..++..++..+..+...+.+.|.+.|..+.+.||.++.+.+.+....+.+.+...+..
T Consensus 160 ~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~ 239 (573)
T COG4987 160 LALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQA 239 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544443332 23333444555566677777777888899999999999999999999999999998888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcc
Q 007122 361 RSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLG-SVYRETVQSLVDMKSMFQLLEE 439 (617)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~-~~~~~~~~~~~~~~ri~~~l~~ 439 (617)
+...+.++...++.....+..+++.+..+-.|..+.-...++....+....++..+. ..+.++.+...+.+|+.++.++
T Consensus 240 ~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q 319 (573)
T COG4987 240 RFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQ 319 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccC
Confidence 887777777665544444434444444445677765444444444455556666566 7778899999999999999988
Q ss_pred cccccCCCCCCCCCCCCcceEEEeEEEeecCCc-ccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEE
Q 007122 440 KADIQDRDNAMPLNLKGGSIQFDNVHFSYLTER-KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI 518 (617)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~I~~~nvsF~Y~~~~-~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~i 518 (617)
+++...+....+. .+..++++||+|+||+.+ ++|+|+||++++||+|||+|+||||||||+++|+|.|+|++|+|.+
T Consensus 320 ~~e~~~~~~~~~~--~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~ 397 (573)
T COG4987 320 KPEVTFPDEQTAT--TGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITL 397 (573)
T ss_pred CcccCCCccccCC--ccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeE
Confidence 7765433111111 122799999999999654 8999999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCCh
Q 007122 519 DGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSG 598 (617)
Q Consensus 519 dG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSG 598 (617)
+|.|+..++.+++|..|++++|.++||++|+|||+.+++|+++|||++++++++||++++++.|+||||.+||+|.+|||
T Consensus 398 ~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSG 477 (573)
T COG4987 398 NGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSG 477 (573)
T ss_pred CCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCC
Q 007122 599 GEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 599 GQrQRlaiARAll~~p~IL 617 (617)
|||||+||||+|++|.|++
T Consensus 478 GE~rRLAlAR~LL~dapl~ 496 (573)
T COG4987 478 GERRRLALARALLHDAPLW 496 (573)
T ss_pred hHHHHHHHHHHHHcCCCeE
Confidence 9999999999999999874
No 32
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.7e-64 Score=614.28 Aligned_cols=413 Identities=18% Similarity=0.266 Sum_probs=314.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007122 202 VFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAP 281 (617)
Q Consensus 202 ~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~ 281 (617)
.......+..+.+|.++|++++++|+.||+++++|++.+++++|...++..+...+..++..++.++..++ +++..+|.
T Consensus 1021 ~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li-~~~~~~p~ 1099 (1560)
T PTZ00243 1021 LSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSIL-VTSASQPF 1099 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 33445556677999999999999999999999999999999888888877655444444444443332222 22222332
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Q 007122 282 FAWITSLSV-VAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQ 360 (617)
Q Consensus 282 l~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 360 (617)
+ +++++.+ +++..+...+.+..+..++......+...+.+.|++.|+++||+|+.|+.+.++|.+..+...+......
T Consensus 1100 ~-~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~ 1178 (1560)
T PTZ00243 1100 V-LVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLEN 1178 (1560)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111111 1111111112222223333333455667889999999999999999999999999998888887766554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007122 361 RSLAFLNFGQNVIFSAALSTAMVLCSHG--ILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLE 438 (617)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~~ri~~~l~ 438 (617)
....+......++.......+.+++.+. ...+.+++|.+.+++.+...+..|+..+...+.+++.++.+++|+.++++
T Consensus 1179 ~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~ 1258 (1560)
T PTZ00243 1179 VANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTD 1258 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444433333332222222333332 23456899999999999999999999999999999999999999999986
Q ss_pred cccccc-C--------------------------CCCCC---CCCCCCcceEEEeEEEeecCC-cccceeeeEEEeCCcE
Q 007122 439 EKADIQ-D--------------------------RDNAM---PLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKS 487 (617)
Q Consensus 439 ~~~~~~-~--------------------------~~~~~---~~~~~~~~I~~~nvsF~Y~~~-~~vL~~isl~I~~G~~ 487 (617)
..++.+ . ..... +.++..+.|+|+||+|+|+++ +++|+|+||+|+|||+
T Consensus 1259 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~Gek 1338 (1560)
T PTZ00243 1259 EVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREK 1338 (1560)
T ss_pred cCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECCCCE
Confidence 432210 0 00000 111234689999999999865 4699999999999999
Q ss_pred EEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHH
Q 007122 488 VAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYD 567 (617)
Q Consensus 488 vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~ 567 (617)
|||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||+||+|||||||.+++ +++|||+++
T Consensus 1339 VaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~-~~sdeeI~~ 1417 (1560)
T PTZ00243 1339 VGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL-EASSAEVWA 1417 (1560)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc-CCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999875 689999999
Q ss_pred HHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCC-CCCC
Q 007122 568 AARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA-PPIL 617 (617)
Q Consensus 568 a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~-p~IL 617 (617)
|++.|+++|+|.++|+||||+|||+|.||||||||||||||||+++ |+||
T Consensus 1418 Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~IL 1468 (1560)
T PTZ00243 1418 ALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFI 1468 (1560)
T ss_pred HHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEE
Confidence 9999999999999999999999999999999999999999999996 8875
No 33
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4.9e-64 Score=607.49 Aligned_cols=487 Identities=22% Similarity=0.283 Sum_probs=381.6
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 007122 108 FRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGI 187 (617)
Q Consensus 108 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 187 (617)
+..+.+|.- +.+++.+++++++.++..+...+.|++++.++|.+... . . .....+ .++..++
T Consensus 47 ~~~~~~~~~----~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~--~-~-----~~~~~~------~~~~~~i 108 (1466)
T PTZ00265 47 FFLPFKCLP----ASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLG--E-N-----VNDIIF------SLVLIGI 108 (1466)
T ss_pred HHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--c-h-----HHHHHH------HHHHHHH
Confidence 334444443 34466667777777777778888899999999976311 0 0 000110 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 007122 188 ARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEI 267 (617)
Q Consensus 188 ~~~~~~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 267 (617)
+..++.+++.+++.+++.++..++|.++|++++++|..||+++.+|++.++++.+...++..+...+..++..++.+
T Consensus 109 ---~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~ 185 (1466)
T PTZ00265 109 ---FQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAF 185 (1466)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23456778889999999999999999999999999999999999999988888887777665544444444444333
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHH
Q 007122 268 SMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDE 347 (617)
Q Consensus 268 ~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~ 347 (617)
+..+++++.++|.+++++++++++++++...+.+..++..++..+..++..+.+.|.+.|+++||+|+.|+.+.++|++
T Consensus 186 -i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~ 264 (1466)
T PTZ00265 186 -LGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNL 264 (1466)
T ss_pred -HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHH
Confidence 2233455667888888877777776666666666666666666666678899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 348 FLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSG--------EMTVGDLVMVNGLLFQLSLPLNFLGSV 419 (617)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g--------~lt~G~l~~~~~~~~~l~~pl~~l~~~ 419 (617)
..+.+.+...+.....+.......++.....++++++|++++.+| .+++|+++++.........++..+...
T Consensus 265 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~ 344 (1466)
T PTZ00265 265 SEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPN 344 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887777766655444444444455666777898888875 588998888765554444555566667
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCcceEEEeEEEeecCC--cccceeeeEEEeCCcEEEEECCCcch
Q 007122 420 YRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTE--RKILDGVSFVVPAGKSVAIVGTSGSG 497 (617)
Q Consensus 420 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~nvsF~Y~~~--~~vL~~isl~I~~G~~vaIVG~SGsG 497 (617)
+..++.+.++++|+.++++.+++.++.......+ ..+.|+|+||+|+|++. .++|+|+||+|++||++|||||||||
T Consensus 345 ~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~~~~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsG 423 (1466)
T PTZ00265 345 ITEYMKSLEATNSLYEIINRKPLVENNDDGKKLK-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCG 423 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccCC-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCC
Confidence 8899999999999999998766533211111111 12379999999999853 47999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCeEEE-CCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCC------------------
Q 007122 498 KSTILRLLFRSFDTHSGSIRI-DGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL------------------ 558 (617)
Q Consensus 498 KSTL~~LL~gl~~p~~G~I~i-dG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~------------------ 558 (617)
||||+++|+|+|+|++|+|++ ||+|+++++.+++|++|+||||+|.||++||+|||.+|.+
T Consensus 424 KSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~ 503 (1466)
T PTZ00265 424 KSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGND 503 (1466)
T ss_pred HHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcccccccccc
Confidence 999999999999999999999 6799999999999999999999999999999999999741
Q ss_pred ---------------------------------------CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChH
Q 007122 559 ---------------------------------------SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGG 599 (617)
Q Consensus 559 ---------------------------------------~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGG 599 (617)
+++++++++|++.+++++||.+||+||||.+|++|.+||||
T Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGG 583 (1466)
T PTZ00265 504 SQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGG 583 (1466)
T ss_pred ccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHH
Confidence 35778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 007122 600 EKQRVALARAFLKAPPIL 617 (617)
Q Consensus 600 QrQRlaiARAll~~p~IL 617 (617)
|||||+|||||+++|+||
T Consensus 584 QkQRiaIARAll~~P~IL 601 (1466)
T PTZ00265 584 QKQRISIARAIIRNPKIL 601 (1466)
T ss_pred HHHHHHHHHHHhcCCCEE
Confidence 999999999999999986
No 34
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.9e-64 Score=613.60 Aligned_cols=419 Identities=18% Similarity=0.267 Sum_probs=308.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 193 SAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSG 272 (617)
Q Consensus 193 ~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 272 (617)
.++..++.+++...+.+...++|.+++++++++|+.||+++++|++.+++++|...++..+...+..++..++.++..++
T Consensus 964 ~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i 1043 (1495)
T PLN03232 964 VAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFA 1043 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888899999999999999999999999999999999999999988888877655544444444433322222
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHHH
Q 007122 273 ILAYKFGAPFAWITSLSVVAYVVFTLSVT-QWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRR 351 (617)
Q Consensus 273 il~~~~~~~l~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~ 351 (617)
++.. ..+ +.+++++.+++.+.+..... +..+...+......+...+.+.|+++|+++||+|+.++++.+++++..+.
T Consensus 1044 ~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~ 1121 (1495)
T PLN03232 1044 LIGT-VST-ISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDN 1121 (1495)
T ss_pred HHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHH
Confidence 2211 122 11111111111111111111 11122333333445567788999999999999999998877777665554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCc----C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 352 YEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGIL-SGEM----T-VGDLVMVNGLLFQLSLPLNFLGSVYRETVQ 425 (617)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~g~l----t-~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~ 425 (617)
..+..........+....... ....++++.+.+.+. .|.+ + .+.+..+..++..+..|+..+...+.+++.
T Consensus 1122 ~~~~~~~~~~~~~wl~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~ 1198 (1495)
T PLN03232 1122 NIRFTLANTSSNRWLTIRLET---LGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAEN 1198 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443332211111111111111 111111222333333 2332 1 223334566777888999999999999999
Q ss_pred HHHHHHHHHHHhcccccccCC--C-CCCCCCCCCcceEEEeEEEeecCC-cccceeeeEEEeCCcEEEEECCCcchHHHH
Q 007122 426 SLVDMKSMFQLLEEKADIQDR--D-NAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTI 501 (617)
Q Consensus 426 ~~~~~~ri~~~l~~~~~~~~~--~-~~~~~~~~~~~I~~~nvsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL 501 (617)
+.++++|+.++++.+++.+.. . .+.+.++..+.|+|+||+|+|+++ +++|+|+||+|+|||+|||||+||||||||
T Consensus 1199 ~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL 1278 (1495)
T PLN03232 1199 SLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSM 1278 (1495)
T ss_pred HHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHH
Confidence 999999999999876543221 1 111223344689999999999754 689999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhC
Q 007122 502 LRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNF 581 (617)
Q Consensus 502 ~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~l 581 (617)
+++|+|+|+|++|+|.+||+|+++++++++|++|++|||||+||+|||||||++++ +++|||+++|++.|+++|+|+++
T Consensus 1279 ~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al~~a~l~~~I~~l 1357 (1495)
T PLN03232 1279 LNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEALERAHIKDVIDRN 1357 (1495)
T ss_pred HHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHHHHcCCHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999986 68999999999999999999999
Q ss_pred CCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 582 PAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 582 p~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
|+||||+|||+|.+|||||||||||||||+++|+||
T Consensus 1358 p~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~IL 1393 (1495)
T PLN03232 1358 PFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKIL 1393 (1495)
T ss_pred cCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 999999999999999999999999999999999986
No 35
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6e-64 Score=582.56 Aligned_cols=420 Identities=22% Similarity=0.355 Sum_probs=330.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 191 TASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMV 270 (617)
Q Consensus 191 ~~~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 270 (617)
+..++..+|+..+...+.+..+.+++++++++++.|+.||+..++|.|.+|.+.|.+.++..+...+..++..++.++.+
T Consensus 870 ~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~ 949 (1381)
T KOG0054|consen 870 ASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGI 949 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34556668899999999999999999999999999999999999998877777777777766555555555555544433
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHHHHccHHHHHhccchHHHHHHHH
Q 007122 271 SGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWR---TKFRKAMN-KADNDASTRAIDSLINYETVKYFNNEAFEAEQYD 346 (617)
Q Consensus 271 ~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~ 346 (617)
++++.+. .|++ ++.+++ +.++.+.+.++. .+..++.+ ...+-...++.|+++|+.|||+|+.|+++.+++.
T Consensus 950 ~~vi~~~-~P~f---li~~~p-l~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~ 1024 (1381)
T KOG0054|consen 950 LVVISYV-TPWF---LIAIIP-LGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQEND 1024 (1381)
T ss_pred HHHhhHH-hHHH---HHHHHH-HHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHH
Confidence 3333222 2222 222222 222222222222 22222232 2334566899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 347 EFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQS 426 (617)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~ 426 (617)
...|.+.+...-......++..-..++......++.++.... ..+.++.|.+-..++|..++...++++.....++.+.
T Consensus 1025 ~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~-~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~ 1103 (1381)
T KOG0054|consen 1025 ELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLL-PSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENN 1103 (1381)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 988888777554433333333333333332222222222211 1222778999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccc--cC-CCCCCCCCCCCcceEEEeEEEeecCC-cccceeeeEEEeCCcEEEEECCCcchHHHHH
Q 007122 427 LVDMKSMFQLLEEKADI--QD-RDNAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTIL 502 (617)
Q Consensus 427 ~~~~~ri~~~l~~~~~~--~~-~~~~~~~~~~~~~I~~~nvsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~ 502 (617)
+.++||+.++.+.+++. +. ...+++.||..|+|+|+|++.+|.++ ++||+|+||+|+|||||||||++|||||||+
T Consensus 1104 m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~ 1183 (1381)
T KOG0054|consen 1104 MVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLI 1183 (1381)
T ss_pred chhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHH
Confidence 99999999999865441 11 12245678888999999999999754 7899999999999999999999999999999
Q ss_pred HHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCC
Q 007122 503 RLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFP 582 (617)
Q Consensus 503 ~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp 582 (617)
+.|+|+.+|.+|+|.|||+|+.++++++||++++++||||.||+||+|.|+...+ +.+|+++|+|+++|+|.++|+++|
T Consensus 1184 ~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~-e~sD~~IW~ALe~~~Lk~~v~~~p 1262 (1381)
T KOG0054|consen 1184 LALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFD-EYSDDEIWEALERCQLKDVVSSLP 1262 (1381)
T ss_pred HHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCccc-ccCHHHHHHHHHHhChHHHHhhCC
Confidence 9999999999999999999999999999999999999999999999999999876 689999999999999999999999
Q ss_pred CCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 583 AKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 583 ~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
+|+|++|.|+|.|+|-||||.+||||||+|+++||
T Consensus 1263 ~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skIL 1297 (1381)
T KOG0054|consen 1263 GGLDSEVSEGGENFSVGQRQLLCLARALLRKSKIL 1297 (1381)
T ss_pred cCCCceecCCCccCChHHHHHHHHHHHHhccCCEE
Confidence 99999999999999999999999999999999986
No 36
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.3e-63 Score=516.42 Aligned_cols=471 Identities=25% Similarity=0.328 Sum_probs=367.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 125 LRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFS 204 (617)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~~~ 204 (617)
..++...++.+.-.++.+..|+++-++.|.+....+. .+++.+. +.++..| ++..++..+|+..+.
T Consensus 23 ~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~-------~TLv~Lt---vlal~ly----~~~glLd~iR~~~l~ 88 (580)
T COG4618 23 RAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSV-------PTLVMLT---VLALGLY----AFQGLLDAIRSRVLV 88 (580)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCc-------chHHHHH---HHHHHHH----HHHHHHHHHHHHHHH
Confidence 3344445555566788888999999999999754321 2222221 1112222 244678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 007122 205 KVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAW 284 (617)
Q Consensus 205 ~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~~ 284 (617)
+++.++...+...+|....+.+..-. ..|+=.+.+.+.++.-+++.+.....+++.-.. -+...+.|.++|++.+
T Consensus 89 Rig~~lD~~L~~~v~~a~~~~~l~~~---~~g~~~Q~LrDL~qvR~Fltg~g~~A~fDaPW~--P~yl~v~fl~Hp~lG~ 163 (580)
T COG4618 89 RIGERLDRQLNGPVFAASFSAPLLRR---GSGDGLQPLRDLDQVRQFLTGTGLTAFFDAPWM--PLYLAVIFLFHPWLGL 163 (580)
T ss_pred HHHHHHHHHhccHHHHHHHhhHHhhc---CCCccccchhhHHHHHHHHcCCCcchhcCCchH--HHHHHHHHHHHHHHHH
Confidence 99999999999999999987776532 334322333333332233322222222221111 1122344556788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 285 ITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLA 364 (617)
Q Consensus 285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (617)
+.++.+++++.+.++-....++..++..+...+.+.....+..|.++|++.|+.....++|.+.+..+.+...+..-...
T Consensus 164 ~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~ 243 (580)
T COG4618 164 IALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNG 243 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 77777666666665555555555666666777788888899999999999999999999999998888887766655544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 007122 365 FLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQ 444 (617)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 444 (617)
.+......+-....+.++.+|+|++++|++|.|.+++-..++.....|+......|.++..+..+.+|+.+++.+.+...
T Consensus 244 ~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~ 323 (580)
T COG4618 244 AFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAA 323 (580)
T ss_pred HHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 44444444444556667778999999999999999999999999999999999999999999999999999998765432
Q ss_pred CCCCCCCCCCCCcceEEEeEEEeecC-CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeC
Q 007122 445 DRDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI 523 (617)
Q Consensus 445 ~~~~~~~~~~~~~~I~~~nvsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i 523 (617)
+. -+.+.+.+.+.++++++.-|+ ++|+++|+||+++|||-+|||||||||||||+|+|.|.++|.+|.|++||-|+
T Consensus 324 ~~---m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l 400 (580)
T COG4618 324 ER---MPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADL 400 (580)
T ss_pred CC---CCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhh
Confidence 21 223334578999999997765 45999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 524 CEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 524 ~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
++.+.+++-+||||.|||..||+|||+|||+=+.++.++|.|.+|++.|+.||.|.+||+||||.|||+|..||||||||
T Consensus 401 ~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQR 480 (580)
T COG4618 401 RQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQR 480 (580)
T ss_pred hcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHH
Confidence 99999999999999999999999999999976667899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
|+||||+|.||.++
T Consensus 481 IaLARAlYG~P~lv 494 (580)
T COG4618 481 IALARALYGDPFLV 494 (580)
T ss_pred HHHHHHHcCCCcEE
Confidence 99999999999864
No 37
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=2.2e-62 Score=548.97 Aligned_cols=473 Identities=16% Similarity=0.155 Sum_probs=350.8
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 007122 109 RTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIA 188 (617)
Q Consensus 109 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~ 188 (617)
+.++++++ .++|+.+++++++.++.++..+..|++++.++|.... ... ..+..+ ++..+
T Consensus 6 ~~l~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~--~~~------~~~~~~----~~~~~----- 64 (555)
T TIGR01194 6 GEILALLR----SPFPAITAFSIALGLAGGLAIIALLASINNAIHEENF--LGQ------GSLFSF----GGLCL----- 64 (555)
T ss_pred HHHHHHHh----hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--ccc------hHHHHH----HHHHH-----
Confidence 44555543 1347777888888888888888999998888774210 000 000000 01111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 189 RTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEIS 268 (617)
Q Consensus 189 ~~~~~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 268 (617)
+..++.+++.++..+...++..++|.++|+|++++|+.||+++++|++.+++++|.+.++.+... ...++..++.++
T Consensus 65 --~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~ 141 (555)
T TIGR01194 65 --LALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFF 141 (555)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHH
Confidence 11345666777788899999999999999999999999999999999999998888888766543 223333333222
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchH--HHHHHHH
Q 007122 269 MVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEA--FEAEQYD 346 (617)
Q Consensus 269 ~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~--~~~~~~~ 346 (617)
+..++++.++|.+++++++.+++.+++..+..+..++..++..+..++.++.+.|.+.|++++|+|+.++ ...++++
T Consensus 142 -~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~ 220 (555)
T TIGR01194 142 -FCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQ 220 (555)
T ss_pred -HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhh
Confidence 2223444556766666555444444444334344444455556677788899999999999999999954 5577788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 347 EFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQS 426 (617)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~ 426 (617)
+..+++.+...+..............+......+.++++++ .|.+|+|+++++..++..+..|+..+.+.+..++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a 297 (555)
T TIGR01194 221 ESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAM---FASIDAAAISAFVLALLYIKGPLEMLVSALPILAQA 297 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777776665544433222222222221112222222222 378999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccc--c-C-CC-CCC---CCCCCCcceEEEeEEEeecCC----cccceeeeEEEeCCcEEEEECCC
Q 007122 427 LVDMKSMFQLLEEKADI--Q-D-RD-NAM---PLNLKGGSIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTS 494 (617)
Q Consensus 427 ~~~~~ri~~~l~~~~~~--~-~-~~-~~~---~~~~~~~~I~~~nvsF~Y~~~----~~vL~~isl~I~~G~~vaIVG~S 494 (617)
.++++|+.++++.++++ . + ++ ... +.....+.|+++||+|+|++. +++|+|+||+|++||++||||||
T Consensus 298 ~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~s 377 (555)
T TIGR01194 298 QIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGEN 377 (555)
T ss_pred HHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCC
Confidence 99999999997632211 1 0 00 000 111123579999999999752 36999999999999999999999
Q ss_pred cchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcH
Q 007122 495 GSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAI 574 (617)
Q Consensus 495 GsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l 574 (617)
|||||||+++|+|+|+|++|+|.+||+|+++++.+++|++++||+||+++|++|++||+ .+++++++++++++.+++
T Consensus 378 GsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l 454 (555)
T TIGR01194 378 GCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEI 454 (555)
T ss_pred CCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999995 467889999999999999
Q ss_pred HHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 575 HDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 575 ~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
+++++++|+||||. .+|||||||||+||||+++||+||
T Consensus 455 ~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~il 492 (555)
T TIGR01194 455 ADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPIL 492 (555)
T ss_pred chhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999994 889999999999999999999985
No 38
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=6e-61 Score=585.68 Aligned_cols=459 Identities=20% Similarity=0.256 Sum_probs=342.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 123 FRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAV 202 (617)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~ 202 (617)
+++.++.+.++.++..++.+..|++++.++|.+... +.. +....++ +..+++ .++..++.......
T Consensus 299 ~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~--~~~------~~~~~~~--~~l~~~----~~~~~~~~~~~~~~ 364 (1495)
T PLN03232 299 LGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEG--DPA------WVGYVYA--FLIFFG----VTFGVLCESQYFQN 364 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--Ccc------chHHHHH--HHHHHH----HHHHHHHHHHHHHH
Confidence 355666667777778888999999999999987421 111 1000000 011111 11112222111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 007122 203 FSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPF 282 (617)
Q Consensus 203 ~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l 282 (617)
..+++.++...++..+|+|+++++..++++..+|++.++++.|.+.++.+.. .+..++...+.+++.++++.. .+
T Consensus 365 ~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~-~l~~l~~~p~~ii~~~~~l~~----~l 439 (1495)
T PLN03232 365 VGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAE-QLHGLWSAPFRIIVSMVLLYQ----QL 439 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH----HH
Confidence 3577888888999999999999999999999999999999888888776642 333344333333322222221 12
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Q 007122 283 AWITS---LSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKT 359 (617)
Q Consensus 283 ~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 359 (617)
++..+ +++++++++...+.+...+..++..+..+++.+.+.|.++|+++||+|++|+.+.+++++..++..+...+.
T Consensus 440 g~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~ 519 (1495)
T PLN03232 440 GVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKA 519 (1495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 222222233444556666777777778888999999999999999999999999999998777666655554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007122 360 QRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEE 439 (617)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 439 (617)
............. ....+.++.++++.+.+|.+|+|.+++++.++..+..|+..++..+..+.++.++++|+.++++.
T Consensus 520 ~~~~~~~~~~~~~--~~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~ 597 (1495)
T PLN03232 520 QLLSAFNSFILNS--IPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLS 597 (1495)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4433322221111 11222334567888889999999999999999999999999999999999999999999999987
Q ss_pred cccccCCCCCCCCCCCCcceEEEeEEEeecC--CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEE
Q 007122 440 KADIQDRDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517 (617)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~I~~~nvsF~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~ 517 (617)
+++..+... +.....+.|+++|++|+|++ ++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|.+.
T Consensus 598 ~~~~~~~~~--~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~ 675 (1495)
T PLN03232 598 EERILAQNP--PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV 675 (1495)
T ss_pred ccccccccC--CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE
Confidence 654221111 11112247999999999984 46899999999999999999999999999999999999999999763
Q ss_pred ECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCC
Q 007122 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLS 597 (617)
Q Consensus 518 idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LS 597 (617)
.+|++|+||||+||||+|||||||+||+| .++|+++++++.|+++++++.||+|+||+|||+|.+||
T Consensus 676 ------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LS 742 (1495)
T PLN03232 676 ------------VIRGSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNIS 742 (1495)
T ss_pred ------------EecCcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccC
Confidence 35779999999999999999999999985 79999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCC
Q 007122 598 GGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 598 GGQrQRlaiARAll~~p~IL 617 (617)
||||||||||||+|+||+|+
T Consensus 743 GGQkQRIaLARAly~~~~Il 762 (1495)
T PLN03232 743 GGQKQRVSMARAVYSNSDIY 762 (1495)
T ss_pred HHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999985
No 39
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.3e-60 Score=580.61 Aligned_cols=461 Identities=22% Similarity=0.288 Sum_probs=340.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 123 FRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAV 202 (617)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~ 202 (617)
+++.++..+++.++..++.++.|++++.++|.+.... ... ..+. .+ +..+++. +...+ ....+.+.
T Consensus 299 ~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~--~~~----~~~~--~~--~~l~~~~-~~~~~-~~~~~~~~-- 364 (1622)
T PLN03130 299 LGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGE--PAW----IGYI--YA--FSIFVGV-VLGVL-CEAQYFQN-- 364 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cch----HHHH--HH--HHHHHHH-HHHHH-HHHHHHHH--
Confidence 3555666777777788899999999999999874321 100 0011 00 0011111 11100 01112221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 007122 203 FSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPF 282 (617)
Q Consensus 203 ~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l 282 (617)
..+++.++...++..+|+|+++++..++.+..+|++.++++.|.+.++.+... +..++...+.+++.++++...+++ .
T Consensus 365 ~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-l~~l~~~pl~ii~~~~lL~~~lg~-~ 442 (1622)
T PLN03130 365 VMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQ-LHTLWSAPFRIIIAMVLLYQQLGV-A 442 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 34778888889999999999999999999999999999998888888776532 333444333333332222222221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 283 AWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRS 362 (617)
Q Consensus 283 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 362 (617)
.++.++++++.+++...+.+..++..++..+..+++.+.+.|.++|+++||+|++|+.+.+++++..++..+...+....
T Consensus 443 ~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~ 522 (1622)
T PLN03130 443 SLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLL 522 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222223333344444556666667777777888889999999999999999999999999988666655443333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 007122 363 LAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKAD 442 (617)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~ 442 (617)
......... .....+.++.++++.+..|.+|+|.++++++++..+..|+..++..+..+.++.++++|+.++++.++.
T Consensus 523 ~~~~~~~~~--~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~ 600 (1622)
T PLN03130 523 SAFNSFILN--SIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEER 600 (1622)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 222211111 111123344567788889999999999999999999999999999999999999999999999976543
Q ss_pred ccCCCCCCCCCCCCcceEEEeEEEeecC--CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCC-CeEEEC
Q 007122 443 IQDRDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS-GSIRID 519 (617)
Q Consensus 443 ~~~~~~~~~~~~~~~~I~~~nvsF~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~-G~I~id 519 (617)
...... +.....+.|+++|++|+|++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++ |+|.+
T Consensus 601 ~~~~~~--~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l- 677 (1622)
T PLN03130 601 VLLPNP--PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI- 677 (1622)
T ss_pred ccccCC--cccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-
Confidence 211111 11111247999999999974 3689999999999999999999999999999999999999999 99985
Q ss_pred CEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChH
Q 007122 520 GQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGG 599 (617)
Q Consensus 520 G~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGG 599 (617)
|++|+||||+||||+|||||||+||+| .++|+++++++.|+++++|+.||+|+||+|||+|.+||||
T Consensus 678 ------------~~~Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGG 744 (1622)
T PLN03130 678 ------------RGTVAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGG 744 (1622)
T ss_pred ------------cCeEEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHH
Confidence 458999999999999999999999987 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 007122 600 EKQRVALARAFLKAPPIL 617 (617)
Q Consensus 600 QrQRlaiARAll~~p~IL 617 (617)
|||||+||||+|+||+|+
T Consensus 745 QKQRIaLARAly~~~~Il 762 (1622)
T PLN03130 745 QKQRVSMARAVYSNSDVY 762 (1622)
T ss_pred HHHHHHHHHHHhCCCCEE
Confidence 999999999999999985
No 40
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.6e-60 Score=580.88 Aligned_cols=418 Identities=20% Similarity=0.301 Sum_probs=312.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 194 AFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGI 273 (617)
Q Consensus 194 ~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i 273 (617)
++..++..++.+...+..++++.++|+++++.|+.||++.++|++.+++++|...++..+...+..++..++.++..++
T Consensus 940 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~- 1018 (1490)
T TIGR01271 940 ALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIF- 1018 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4556677788888999999999999999999999999999999998888888877776655444444444433332222
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHHHHH
Q 007122 274 LAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYE 353 (617)
Q Consensus 274 l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~ 353 (617)
+++.++|++.++++.++++++.+...+.+..+...+......+...+.+.|++.|+.+||+|++|+++.+++.+..+...
T Consensus 1019 ~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~ 1098 (1490)
T TIGR01271 1019 VVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHT 1098 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 22233333222111111111111111222222233333344556778999999999999999999999999999887655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 354 DAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSM 433 (617)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~~ri 433 (617)
+..........+......++.......+.++ .+....++.|.+..++.++..+..++..+...+.++.....+++|+
T Consensus 1099 ~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l---~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi 1175 (1490)
T TIGR01271 1099 ANWFLYLSTLRWFQMRIDIIFVFFFIAVTFI---AIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRV 1175 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333322333322222221111111111 1112234556666666677788889999999999999999999999
Q ss_pred HHHhcccccccCC-C----------------CCCCCCCCCcceEEEeEEEeecC-CcccceeeeEEEeCCcEEEEECCCc
Q 007122 434 FQLLEEKADIQDR-D----------------NAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSG 495 (617)
Q Consensus 434 ~~~l~~~~~~~~~-~----------------~~~~~~~~~~~I~~~nvsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SG 495 (617)
.++++.+++.... + ..++.++..+.|+|+||+|+|++ .+++|+|+||+|+|||+|||||+||
T Consensus 1176 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSG 1255 (1490)
T TIGR01271 1176 FKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTG 1255 (1490)
T ss_pred HHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCC
Confidence 9998765442211 0 01112344578999999999985 5789999999999999999999999
Q ss_pred chHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHH
Q 007122 496 SGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIH 575 (617)
Q Consensus 496 sGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~ 575 (617)
||||||+++|+|+|+ ++|+|++||+|+++++++++|++|+||||||+||+|||||||.+++ +.+|+++++|++.++++
T Consensus 1256 sGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~~tdeei~~aL~~~~L~ 1333 (1490)
T TIGR01271 1256 SGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-QWSDEEIWKVAEEVGLK 1333 (1490)
T ss_pred CCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-CCCHHHHHHHHHHCCCH
Confidence 999999999999997 8999999999999999999999999999999999999999998765 58999999999999999
Q ss_pred HHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 576 DTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 576 ~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
++|.++|+|+||+|||+|.+|||||||||||||||+++|+||
T Consensus 1334 ~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~IL 1375 (1490)
T TIGR01271 1334 SVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKIL 1375 (1490)
T ss_pred HHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEE
Confidence 999999999999999999999999999999999999999986
No 41
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.6e-58 Score=531.70 Aligned_cols=474 Identities=22% Similarity=0.268 Sum_probs=359.7
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHH
Q 007122 105 MKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIG 184 (617)
Q Consensus 105 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (617)
+++++.+++.+ ++.+++..++..+......+.|.+++.+++.+... ... ..+..++. ++
T Consensus 189 psl~~al~~~f--------~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~--~~~--~~~g~~~a---------~~ 247 (1381)
T KOG0054|consen 189 PSLLRALLRTF--------GRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEK--RLP--LNNGYLLA---------VL 247 (1381)
T ss_pred cHHHHHHHHHH--------HHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCC--Ccc--cchhHHHH---------HH
Confidence 34555555433 45555555555555566888999999999987432 110 00111111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 007122 185 YGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTI 264 (617)
Q Consensus 185 ~~i~~~~~~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 264 (617)
..++.++..++..--.+...+++.++...+...+|+|.+++...--.....|++.+.++.|.+.+..+... ...++...
T Consensus 248 lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~-~h~~w~~P 326 (1381)
T KOG0054|consen 248 LFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACF-LHLLWSAP 326 (1381)
T ss_pred HHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHH-HHHHHHHH
Confidence 11122233333333344566888899999999999999999988777889999999999888887766433 44455555
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHH
Q 007122 265 LEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQ 344 (617)
Q Consensus 265 ~~~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~ 344 (617)
+.+++.+.+++..+++. ++..++++++++++..++.+..++.+++..+...++...+.|.++||++||+|+||+.+.++
T Consensus 327 lqi~~~l~lLy~~LG~s-a~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~ 405 (1381)
T KOG0054|consen 327 LQIILALYLLYGLLGPS-ALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKK 405 (1381)
T ss_pred HHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHH
Confidence 66665555555555543 45556666777788888888888888888888899999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 345 YDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHG-ILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRET 423 (617)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~ 423 (617)
.++..++..+.-.|.....+...+.. .....++.++.++++. ...+.+|...+++.++++..+..|+..++..+..+
T Consensus 406 I~~~R~~El~~lrk~~~~~~~~~~~~--~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~ 483 (1381)
T KOG0054|consen 406 IEDLRQKELKLLRKSAYLSALNSFLN--FFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQL 483 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88855544444333333222222211 1122222333344444 45678888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccCCCCCCCCCCCCcceEEEeEEEeecC--CcccceeeeEEEeCCcEEEEECCCcchHHHH
Q 007122 424 VQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTI 501 (617)
Q Consensus 424 ~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~nvsF~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL 501 (617)
.++.++++|+.+++..++..++.....+.......|+++|.+|+|++ .++.|+||||+|++|+.+||||+.|||||||
T Consensus 484 vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSL 563 (1381)
T KOG0054|consen 484 VQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSL 563 (1381)
T ss_pred HHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHH
Confidence 99999999999999876543322211122223357999999999975 3469999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhC
Q 007122 502 LRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNF 581 (617)
Q Consensus 502 ~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~l 581 (617)
+..|+|..+..+|+|.++| .++||||+||||+|||||||.||.| .+++...++++.|+|+++++.|
T Consensus 564 L~AiLGEm~~~sG~v~v~g-------------siaYv~Q~pWI~ngTvreNILFG~~-~d~~rY~~Vi~aC~L~~Dle~L 629 (1381)
T KOG0054|consen 564 LSAILGEMPKLSGSVAVNG-------------SVAYVPQQPWIQNGTVRENILFGSP-YDEERYDKVIKACALKKDLEIL 629 (1381)
T ss_pred HHHHhcCcccccceEEEcC-------------eEEEeccccHhhCCcHHHhhhcCcc-ccHHHHHHHHHHccCHhHHhhc
Confidence 9999999999999999999 4999999999999999999999985 8888899999999999999999
Q ss_pred CCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 582 PAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 582 p~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
|.|+.|+|||+|.||||||||||+||||+|+|+||+
T Consensus 630 p~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIY 665 (1381)
T KOG0054|consen 630 PFGDLTEIGERGINLSGGQKQRISLARAVYQDADIY 665 (1381)
T ss_pred CCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEE
Confidence 999999999999999999999999999999999974
No 42
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=6.8e-57 Score=504.38 Aligned_cols=458 Identities=16% Similarity=0.186 Sum_probs=319.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 122 EFRLRVITALGFLVAAKVLNVQ-VPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRT 200 (617)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~l~-~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~ 200 (617)
++++.++..+++.++..++.+. .|++.++++|.+.. .. ..+.. ++ ..++.. .++.+++.
T Consensus 10 ~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~---~~------~~~~~-~~---~~~~~~-------~~~~~~~~ 69 (547)
T PRK10522 10 QYRWPFISVMALSLASAALGIGLIAFINQRLIETADT---SL------LVLPE-FL---GLLLLL-------MAVTLGSQ 69 (547)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---cc------hHHHH-HH---HHHHHH-------HHHHHHHH
Confidence 3456666677776777777776 47888889986521 00 00100 00 001100 12345667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007122 201 AVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGA 280 (617)
Q Consensus 201 ~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~ 280 (617)
++..+++.++..++|.++|+|++++|+.+|+++++|++.+++++|.+.+...... +..++..++.+++ ..++++.++|
T Consensus 70 ~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~-l~~~~~~~~~~i~-~~~~l~~~~~ 147 (547)
T PRK10522 70 LALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVR-LPELVQGIILTLG-SAAYLAWLSP 147 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHhH
Confidence 7778888999999999999999999999999999999988888777766554322 2223333332222 2234445677
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccch---HHHHHHHHHHHHHHHHHHH
Q 007122 281 PFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNE---AFEAEQYDEFLRRYEDAAL 357 (617)
Q Consensus 281 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e---~~~~~~~~~~~~~~~~~~~ 357 (617)
.+++++++++++.+++...+.+...+..++..+..++..+.+.|.++|+++++ ++.+ +.+.+++++..+++.+...
T Consensus 148 ~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (547)
T PRK10522 148 KMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHII 226 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhH
Confidence 77776666655555555555555555666667778888999999999999996 4443 3456777777777666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007122 358 KTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLL 437 (617)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~~ri~~~l 437 (617)
+.............+.......+.++++.. . +..+.+.+.++..+...+..|+..+...+..++.+..+.+|+.+++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~ 303 (547)
T PRK10522 227 RADTFHLSAVNWSNIMMLGAIGLVFYMANS-L--GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLA 303 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 544332222221111111111111111211 1 2223444444444444567899999999999999999999999987
Q ss_pred cccccccCCCCCCCCCCCCcceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEE
Q 007122 438 EEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517 (617)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~ 517 (617)
+.+++.+..+ ..+.+ ..+.|+++||+|+|++++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.
T Consensus 304 ~~~~~~~~~~-~~~~~-~~~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~ 381 (547)
T PRK10522 304 LAPYKAEFPR-PQAFP-DWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEIL 381 (547)
T ss_pred cccccccccc-ccccC-cCceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 6543221111 11111 124799999999998666899999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCC
Q 007122 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLS 597 (617)
Q Consensus 518 idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LS 597 (617)
+||+|+++++.+++|++++|||||+++|++|++|| + ++.++++++++++.+++++++.. |+|. .+|.+||
T Consensus 382 ~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LS 451 (547)
T PRK10522 382 LDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLS 451 (547)
T ss_pred ECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCC
Confidence 99999999999999999999999999999999999 3 45778888878877777666542 4442 2489999
Q ss_pred hHHHHHHHHHHHHhCCCCCC
Q 007122 598 GGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 598 GGQrQRlaiARAll~~p~IL 617 (617)
|||||||+||||++++|+||
T Consensus 452 gGq~qRl~lARal~~~~~il 471 (547)
T PRK10522 452 KGQKKRLALLLALAEERDIL 471 (547)
T ss_pred HHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999985
No 43
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=8.8e-56 Score=502.65 Aligned_cols=486 Identities=17% Similarity=0.136 Sum_probs=360.2
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHH
Q 007122 107 IFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYG 186 (617)
Q Consensus 107 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (617)
.++.++++++.....+....+++.++++++.+++.+..|++.+.++|.+.... ...+ ...+. .+ ++.+++.
T Consensus 78 ~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~--~~~f---~~~l~-~~--~l~~~~~- 148 (659)
T TIGR00954 78 KLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRS--PRNF---AWILF-KW--FLIAPPA- 148 (659)
T ss_pred HHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcC--HHHH---HHHHH-HH--HHHHHHH-
Confidence 35556666652211111234556666777788899999999999999876321 1100 00011 01 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 007122 187 IARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILE 266 (617)
Q Consensus 187 i~~~~~~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 266 (617)
.++..+..+++..+...+..++...++.+.|++....+..+|++ .+|++.+++++|.+.+.......+..++..++.
T Consensus 149 --~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ 225 (659)
T TIGR00954 149 --SFINSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILD 225 (659)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12334556667777888888999999999999988899999986 789998889888887776665556666665555
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHH
Q 007122 267 ISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYD 346 (617)
Q Consensus 267 ~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~ 346 (617)
++..++.++...+|.+++++++.+++.+++...+.+...+..++.++..++....+.|.++|+++||+|+.|+.+.++++
T Consensus 226 ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~ 305 (659)
T TIGR00954 226 VILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVM 305 (659)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHH
Confidence 54443334333566555555555555555555566666777777778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHh-----cCCcCHHHHHH-HHHH---HHHHHHHHHH
Q 007122 347 EFLRRYEDAALKTQRSLAFLNFGQNVIFSA-ALSTAMV-LCSHGIL-----SGEMTVGDLVM-VNGL---LFQLSLPLNF 415 (617)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~v~-----~g~lt~G~l~~-~~~~---~~~l~~pl~~ 415 (617)
+..+++.+...+..+.......+..++... ...+.++ .+...+. .|.+|+|.+++ +..+ +..+..|+..
T Consensus 306 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~ 385 (659)
T TIGR00954 306 SSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGR 385 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888877776666655544321 1222222 2332221 27899998766 4444 5677899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccCC--------C--CC-------------CCCCCCCcceEEEeEEEeecCCc
Q 007122 416 LGSVYRETVQSLVDMKSMFQLLEEKADIQDR--------D--NA-------------MPLNLKGGSIQFDNVHFSYLTER 472 (617)
Q Consensus 416 l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--------~--~~-------------~~~~~~~~~I~~~nvsF~Y~~~~ 472 (617)
+...+.+++++.++.+|+.++++.+++..+. + +. .......+.|+++||+|+|++++
T Consensus 386 l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~~ 465 (659)
T TIGR00954 386 LMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGD 465 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCCC
Confidence 9999999999999999999999764432100 0 00 00111224699999999998666
Q ss_pred ccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHH
Q 007122 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHN 552 (617)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreN 552 (617)
++|+|+||+|++||+++|+||||||||||+++|+|+|+|++|+|.+|+ |++++||||+|++|++|++||
T Consensus 466 ~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~en 534 (659)
T TIGR00954 466 VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQ 534 (659)
T ss_pred eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHH
Confidence 899999999999999999999999999999999999999999999874 568999999999999999999
Q ss_pred HhcCC-------CCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 553 IRYGR-------LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 553 I~~g~-------~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
|.++. ++.++++++++++.+++++++++ |.|+||..+ .+.+||||||||++||||++++|++|
T Consensus 535 i~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~il 604 (659)
T TIGR00954 535 IIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFA 604 (659)
T ss_pred HhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEE
Confidence 99874 34678899999999999999988 999999986 57799999999999999999999975
No 44
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=5.7e-55 Score=533.91 Aligned_cols=472 Identities=18% Similarity=0.248 Sum_probs=346.5
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHH
Q 007122 105 MKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIG 184 (617)
Q Consensus 105 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (617)
+++++.+++.+ ++.++..+++.++..++.++.|++++.++|.+..... .. .... .+. ++.++.
T Consensus 305 ~sl~~~l~~~~--------~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~-~~----~~g~-~~~---~~~~~~ 367 (1522)
T TIGR00957 305 PSLFKVLYKTF--------GPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMA-PD----WQGY-FYT---GLLFVC 367 (1522)
T ss_pred ccHHHHHHHHH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cc----chHH-HHH---HHHHHH
Confidence 44555555443 4555666667777888999999999999998743211 10 0001 110 011111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 007122 185 YGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTI 264 (617)
Q Consensus 185 ~~i~~~~~~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 264 (617)
+ + +..++.....+...+++.++...++..+|+|+++++..++++..+|++.++++.|.+.+..+.. .+..++...
T Consensus 368 ~-~---~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~ 442 (1522)
T TIGR00957 368 A-C---LQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLAT-YINMIWSAP 442 (1522)
T ss_pred H-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHH
Confidence 1 1 1122333334456678889999999999999999999999999999999999888777665432 233444444
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHH
Q 007122 265 LEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQ 344 (617)
Q Consensus 265 ~~~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~ 344 (617)
+.+++.++++....++ .++..++++++++++...+.+...+.+++..+..+++.+.+.|.++|+++||++++|+.+.++
T Consensus 443 ~~i~~~~~ll~~~~g~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~ 521 (1522)
T TIGR00957 443 LQVILALYFLWLNLGP-SVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDK 521 (1522)
T ss_pred HHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4444333333333222 223333344444555555666777777778888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHh--cCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 345 YDEFLRRYEDAALKTQRSLAFLNFGQNVIFS--AALSTAMVLCSHGIL--SGEMTVGDLVMVNGLLFQLSLPLNFLGSVY 420 (617)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~--~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~ 420 (617)
+++..++..+...+..... ........ ...+.++.++.+.+. .+.++.+.+++.++++..+..|+..++..+
T Consensus 522 i~~~r~~e~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~ 597 (1522)
T TIGR00957 522 VEGIRQEELKVLKKSAYLH----AVGTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVI 597 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9887666554433333222 21111111 111222234455555 357899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccCCCCCCCCC-CCCcceEEEeEEEeecC-CcccceeeeEEEeCCcEEEEECCCcchH
Q 007122 421 RETVQSLVDMKSMFQLLEEKADIQDRDNAMPLN-LKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGK 498 (617)
Q Consensus 421 ~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~-~~~~~I~~~nvsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGK 498 (617)
..+.++.++++|+.++++.++...+........ ...+.|+++|++|+|++ ++++|+|+||+|++||+++|+|+|||||
T Consensus 598 ~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGK 677 (1522)
T TIGR00957 598 SSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGK 677 (1522)
T ss_pred HHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCH
Confidence 999999999999999997654321110001111 11237999999999985 4689999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHH
Q 007122 499 STILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTI 578 (617)
Q Consensus 499 STL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I 578 (617)
|||+++|+|+++|++|+|.+|| +|+||||+|++|++||+|||.+|.+ .++++..++++.+++.+++
T Consensus 678 STLl~~l~g~~~~~~G~i~~~g-------------~i~yv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l 743 (1522)
T TIGR00957 678 SSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQQAWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDL 743 (1522)
T ss_pred HHHHHHHhCCCccCCcEEEECC-------------EEEEEcCCccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHH
Confidence 9999999999999999999997 5999999999999999999999975 6777888899999999999
Q ss_pred HhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 579 MNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 579 ~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
+.+|+|++|.+||+|.+|||||||||+||||+|++|+|+
T Consensus 744 ~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~il 782 (1522)
T TIGR00957 744 EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY 782 (1522)
T ss_pred HhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999999999999999999999985
No 45
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.4e-52 Score=511.41 Aligned_cols=458 Identities=17% Similarity=0.207 Sum_probs=340.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 124 RLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVF 203 (617)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~~ 203 (617)
++.++...++.++..++.++.|++++.+++.+........ .....+. ++.++ +.++..++.....+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~-----~~~~~l~---~~~~~----~~~~~~l~~~~~~~~~ 146 (1490)
T TIGR01271 79 FWRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPER-----EIAYYLA---LGLCL----LFIVRTLLLHPAIFGL 146 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCch-----hHHHHHH---HHHHH----HHHHHHHHHHHHHHHH
Confidence 4555566666677778899999999999998731111000 0001111 11111 1112223344445566
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 007122 204 SKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFA 283 (617)
Q Consensus 204 ~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~ 283 (617)
.+.+.++...+...+|+|+++++...+++..+|++.++++.|.+.+....... ..++...+.+++.+++++..++| .+
T Consensus 147 ~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~-~~ 224 (1490)
T TIGR01271 147 HHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEV-NG 224 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 67888888899999999999999999999999999999998887776654432 33444444444444444444443 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 284 WITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSL 363 (617)
Q Consensus 284 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (617)
++.++++++++++...+.+...+.+++..+..+++...+.|.++||++||+++||+.+.+++++..+...+...+.....
T Consensus 225 l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~ 304 (1490)
T TIGR01271 225 FCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLR 304 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666667777778888888888899999999999999999999999999888886655444444433322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 007122 364 AFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPL-NFLGSVYRETVQSLVDMKSMFQLLEEKAD 442 (617)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl-~~l~~~~~~~~~~~~~~~ri~~~l~~~~~ 442 (617)
....... ......+.++.+++|.+..+ ++++.++++++++..+..|+ ..++..+..+.++.++++||.++|..++.
T Consensus 305 ~~~~~~~--~~~~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~ 381 (1490)
T TIGR01271 305 YFYSSAF--FFSGFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEY 381 (1490)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 1211111 11222233344556655544 78999999999999998887 47999999999999999999999986543
Q ss_pred ccCCCCCCCCCCCCcceEEEeEEEeecC---------------------------------CcccceeeeEEEeCCcEEE
Q 007122 443 IQDRDNAMPLNLKGGSIQFDNVHFSYLT---------------------------------ERKILDGVSFVVPAGKSVA 489 (617)
Q Consensus 443 ~~~~~~~~~~~~~~~~I~~~nvsF~Y~~---------------------------------~~~vL~~isl~I~~G~~va 489 (617)
.... . ......|+++|++|.|+. .+++|+|+||+|++||+++
T Consensus 382 ~~~~-~----~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~ 456 (1490)
T TIGR01271 382 KTLE-Y----NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLA 456 (1490)
T ss_pred cccc-c----cCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEE
Confidence 2111 0 011236999999999952 1368999999999999999
Q ss_pred EECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHH
Q 007122 490 IVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAA 569 (617)
Q Consensus 490 IVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~ 569 (617)
|+||+|||||||+++|+|+++|++|+|.+|| +|+||||+|++|++||+|||.||.+ .++++..+++
T Consensus 457 I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~ 522 (1490)
T TIGR01271 457 VAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSVI 522 (1490)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cchHHHHHHH
Confidence 9999999999999999999999999999998 5999999999999999999999864 5666777888
Q ss_pred HHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 570 RRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 570 ~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
+.++++++++.+|+|++|+|||+|.+|||||||||+||||++++|+|+
T Consensus 523 ~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~il 570 (1490)
T TIGR01271 523 KACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLY 570 (1490)
T ss_pred HHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEE
Confidence 888999999999999999999999999999999999999999999975
No 46
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.2e-50 Score=494.87 Aligned_cols=474 Identities=21% Similarity=0.283 Sum_probs=349.7
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHH
Q 007122 105 MKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIG 184 (617)
Q Consensus 105 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (617)
.++++.+++.+ ++.++..+++.++..++.++.|++++.+++.+... +.. ..+.+.++ ++
T Consensus 232 ~~l~~~l~~~~--------~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~--~~~----~~~g~~l~-------~~ 290 (1560)
T PTZ00243 232 LSLLRTLFAAL--------PYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDAD--NAT----WGRGLGLV-------LT 290 (1560)
T ss_pred cHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--Ccc----hhHHHHHH-------HH
Confidence 45555555443 45566677777788899999999999999876321 111 01111111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccc--ccCchHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 007122 185 YGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHL--SRETGALNRIIDRGSRAINFILSSMVFNVVP 262 (617)
Q Consensus 185 ~~i~~~~~~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~--~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~ 262 (617)
+.+..++..++...+.+...+.+.++...+...+|+|+++++...+. +..+|++.++++.|.+.+..+... ...++.
T Consensus 291 l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~-~~~l~~ 369 (1560)
T PTZ00243 291 LFLTQLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQY-CMYLWS 369 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHH-HHHHHH
Confidence 11112233455555667777888899999999999999999987665 457899999998888877766533 334445
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHH
Q 007122 263 TILEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEA 342 (617)
Q Consensus 263 ~~~~~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~ 342 (617)
..+.+++.++++....+| .+++.++++++.+++...+.+...+.+++..+..+++.....|.+++|++||+++||+.+.
T Consensus 370 ~Pl~li~~~~lL~~~lG~-~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~ 448 (1560)
T PTZ00243 370 SPMVLLLSILLLSRLVGW-CALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFV 448 (1560)
T ss_pred HHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444443 3444444555555666666777777777788888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 343 EQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRE 422 (617)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~ 422 (617)
+++.+..++..+...+.........++... ...+..++.+++|.+..+.+|++.++++++++..+..|+..++..+..
T Consensus 449 ~ri~~~R~~El~~l~~~~~~~~~~~~~~~~--~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~ 526 (1560)
T PTZ00243 449 ANIEDKRARELRYLRDVQLARVATSFVNNA--TPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTT 526 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999986655555544433332222222111 112222334566777789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccc-------cCC-----------C------CC-----CC----------------------
Q 007122 423 TVQSLVDMKSMFQLLEEKADI-------QDR-----------D------NA-----MP---------------------- 451 (617)
Q Consensus 423 ~~~~~~~~~ri~~~l~~~~~~-------~~~-----------~------~~-----~~---------------------- 451 (617)
+.++.++++||.++|+.++.. .+. . +. .+
T Consensus 527 ~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (1560)
T PTZ00243 527 VLQFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLC 606 (1560)
T ss_pred HHHHHHHHHHHHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhcc
Confidence 999999999999999764410 000 0 00 00
Q ss_pred -------CCCCCcceEEEeEEEeec---------------------------------------CCcccceeeeEEEeCC
Q 007122 452 -------LNLKGGSIQFDNVHFSYL---------------------------------------TERKILDGVSFVVPAG 485 (617)
Q Consensus 452 -------~~~~~~~I~~~nvsF~Y~---------------------------------------~~~~vL~~isl~I~~G 485 (617)
.+...+.+.++|++|+++ +++++|+|+||+|++|
T Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G 686 (1560)
T PTZ00243 607 CEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRG 686 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCC
Confidence 000113577888888643 1246899999999999
Q ss_pred cEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHH
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEV 565 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i 565 (617)
++++|+|+||||||||+++|+|+++|++|+|.++ ++|+||||+|++|++||+|||.++.+ .+++++
T Consensus 687 ~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~-~~~~~~ 752 (1560)
T PTZ00243 687 KLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFDE-EDAARL 752 (1560)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHHHHHHcCCh-hhHHHH
Confidence 9999999999999999999999999999999874 47999999999999999999999864 456678
Q ss_pred HHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 566 YDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 566 ~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
.++++.++++++++.+|+|++|.+|++|.+|||||||||+||||++++|+|+
T Consensus 753 ~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~il 804 (1560)
T PTZ00243 753 ADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVY 804 (1560)
T ss_pred HHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 8888989999999999999999999999999999999999999999999975
No 47
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=2.6e-37 Score=334.60 Aligned_cols=407 Identities=18% Similarity=0.245 Sum_probs=291.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCc--hH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 195 FNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRET--GA---LNRIIDRGSRAINFILSSMVFNVVPTILEISM 269 (617)
Q Consensus 195 ~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~--g~---l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 269 (617)
+...+.++-..+..+....+.+.+.++.++....|+..... +. .-+|++.|.+........+..+++..+++++.
T Consensus 102 ~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islis 181 (604)
T COG4178 102 LNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLIS 181 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33446667777777888888889999998888554444332 21 22445544443333333445556666666555
Q ss_pred HHHHHHHH--------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhc
Q 007122 270 VSGILAYK--------------FGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYF 335 (617)
Q Consensus 270 ~~~il~~~--------------~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~ 335 (617)
.+++++-. +...+.|.+++.++....+..++.+...+..-+.++..++....+....++.+.|-.+
T Consensus 182 F~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly 261 (604)
T COG4178 182 FTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALY 261 (604)
T ss_pred HHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 55554411 1112222222222222222223333334444444555666777788888899999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHH
Q 007122 336 NNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNF 415 (617)
Q Consensus 336 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~ 415 (617)
+.|+.+.++.+...+...+...+...+...+..+......+..++..++++.....|+++.|.++.....+.++...+++
T Consensus 262 ~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslsw 341 (604)
T COG4178 262 RGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSW 341 (604)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888877777666555555444444444433333334444556677789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccc--CCCCCCCC------CCCCcceEEEeEEEeecCCcccceeeeEEEeCCcE
Q 007122 416 LGSVYRETVQSLVDMKSMFQLLEEKADIQ--DRDNAMPL------NLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKS 487 (617)
Q Consensus 416 l~~~~~~~~~~~~~~~ri~~~l~~~~~~~--~~~~~~~~------~~~~~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~ 487 (617)
+...+..+..-.+.+.|+.++.+.-+..+ +.....+. ......|+++|++..-|++...++++|++|++||.
T Consensus 342 fi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~ 421 (604)
T COG4178 342 FIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGER 421 (604)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCCCeeeccceeeeCCCCE
Confidence 99999999999999999999864322111 00000000 00135899999999999888999999999999999
Q ss_pred EEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCC--CCHHHH
Q 007122 488 VAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS--ATEEEV 565 (617)
Q Consensus 488 vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~--~~de~i 565 (617)
+-|.|+||||||||+|.|+|+++-.+|+|-+-.. ..+-|+||.|++-.||+||-|+|.++. .+|+++
T Consensus 422 llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----------~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l 490 (604)
T COG4178 422 LLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----------SALLFLPQRPYLPQGTLREALCYPNAAPDFSDAEL 490 (604)
T ss_pred EEEECCCCCCHHHHHHHHhccCccCCCceecCCC-----------CceEEecCCCCCCCccHHHHHhCCCCCCCCChHHH
Confidence 9999999999999999999999999999977521 248999999999999999999998754 899999
Q ss_pred HHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 566 YDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 566 ~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
.+++.+++|.++++++.+- .....-||+|||||||+||.++++|+++
T Consensus 491 ~~vL~~vgL~~L~~rl~~~-----~~W~~vLS~GEqQRlafARilL~kP~~v 537 (604)
T COG4178 491 VAVLHKVGLGDLAERLDEE-----DRWDRVLSGGEQQRLAFARLLLHKPKWV 537 (604)
T ss_pred HHHHHHcCcHHHHHHHhcc-----CcHhhhcChhHHHHHHHHHHHHcCCCEE
Confidence 9999999999999997543 3377889999999999999999999863
No 48
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.4e-38 Score=321.23 Aligned_cols=159 Identities=32% Similarity=0.569 Sum_probs=150.1
Q ss_pred cceEEEeEEEeecC-CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 007122 457 GSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i 535 (617)
+.|+++|++|+|++ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|.+||.++..++..++|+.|
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 36999999999974 5689999999999999999999999999999999999998 799999999999999999999999
Q ss_pred EEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCC
Q 007122 536 GVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (617)
Q Consensus 536 ~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~ 615 (617)
+||||++.+|++|++||+.+.. ..++++++++++.+++++++.++|+|+||.++|+|.+||||||||++||||++++|+
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ 158 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYG-KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 158 (275)
T ss_pred EEECCCcccchhhHHHHhhhcc-CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999997543 257889999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 007122 616 IL 617 (617)
Q Consensus 616 IL 617 (617)
||
T Consensus 159 il 160 (275)
T cd03289 159 IL 160 (275)
T ss_pred EE
Confidence 85
No 49
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6e-34 Score=286.76 Aligned_cols=401 Identities=18% Similarity=0.193 Sum_probs=255.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 198 LRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYK 277 (617)
Q Consensus 198 lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~ 277 (617)
+........++..+.++|.++.++++..|+.-+++-.++.+...+..|.+.+..-+.. +..+....+.... +...+.+
T Consensus 67 is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~-lp~~~qa~il~l~-s~aYLay 144 (546)
T COG4615 67 ISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSR-LPELVQAIILTLG-SAAYLAY 144 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhh-hHHHHHHHHHHHH-HHHHHHH
Confidence 3344566778888999999999999999999999999998877787777766633222 2222222221111 1122233
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHH--HHHHHHHHHHHHHH
Q 007122 278 FGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFE--AEQYDEFLRRYEDA 355 (617)
Q Consensus 278 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~--~~~~~~~~~~~~~~ 355 (617)
+++++..++.+.+++.+...........+......+...+..+..+..+.|.|+++...-..+. .+.|....+.+.+.
T Consensus 145 LSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~ 224 (546)
T COG4615 145 LSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHH 224 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhh
Confidence 4554434333333322222222222233333444455667777888889999999987533221 22222222222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 356 ALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQ 435 (617)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~~ri~~ 435 (617)
....+........+.++++......++++.. .-+.-+.....++...+..+..|+.++.+.+..+-.+.++++++.+
T Consensus 225 ~~~~n~f~~la~~~~ni~l~~lIGlvf~lal---~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiak 301 (546)
T COG4615 225 IIRANTFHLLAVNWSNIMLLGLIGLVFWLAL---SLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAK 301 (546)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 1111111000011111111111111111111 1233333344445555567788999999999999999999999988
Q ss_pred HhcccccccCCCCCCCCCCCCcceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCe
Q 007122 436 LLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGS 515 (617)
Q Consensus 436 ~l~~~~~~~~~~~~~~~~~~~~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~ 515 (617)
+-..|+.. +-..+.+.+ .-..||++||.|+|++..-=+..||++|++||.|-|+|.+||||||+++||.|+|.|++|+
T Consensus 302 le~~~~~a-~~~~~q~~p-~~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~ 379 (546)
T COG4615 302 LELAPYKA-DFPRPQAFP-DWKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGE 379 (546)
T ss_pred hhcCCccc-cCCCCCcCC-cccceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCc
Confidence 75433322 111111111 1247999999999987666688999999999999999999999999999999999999999
Q ss_pred EEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCC-CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCC
Q 007122 516 IRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS-ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGL 594 (617)
Q Consensus 516 I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~-~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~ 594 (617)
|++||.+++.-+++++|+-++-|+-|.+||+.++ |.+. ++.+.+.+-+++-.+..-.. +-+|-- .-.
T Consensus 380 I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~kts-l~d~~f-----s~~ 447 (546)
T COG4615 380 ILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAHKTS-LNDGRF-----SNL 447 (546)
T ss_pred eeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhhhhc-ccCCcc-----ccc
Confidence 9999999999999999999999999999999765 3333 67777777776665554322 222211 125
Q ss_pred CCChHHHHHHHHHHHHhCCCCCC
Q 007122 595 KLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 595 ~LSGGQrQRlaiARAll~~p~IL 617 (617)
.||-|||.|+|+-=|++-+.||+
T Consensus 448 kLStGQkKRlAll~AllEeR~Il 470 (546)
T COG4615 448 KLSTGQKKRLALLLALLEERDIL 470 (546)
T ss_pred ccccchHHHHHHHHHHHhhCCeE
Confidence 79999999999999999999885
No 50
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-36 Score=315.38 Aligned_cols=157 Identities=30% Similarity=0.488 Sum_probs=134.1
Q ss_pred CCCcceEEEeEEEeecC-CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC-----CCCCeEEECCEeCC--C
Q 007122 454 LKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDIC--E 525 (617)
Q Consensus 454 ~~~~~I~~~nvsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~-----p~~G~I~idG~~i~--~ 525 (617)
+..+.|+++|++|+|++ .+++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++. +
T Consensus 76 ~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 76 NHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred CcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 34568999999999974 4589999999999999999999999999999999999997 57999999999997 4
Q ss_pred CCHHHHhcceEEEccCCCcccccHHHHHhcCCC--CCCHHHH-----HHHHHHHcHHHHHHhCCCCccccccCCCCCCCh
Q 007122 526 VTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL--SATEEEV-----YDAARRAAIHDTIMNFPAKYSTVVGERGLKLSG 598 (617)
Q Consensus 526 ~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~--~~~de~i-----~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSG 598 (617)
++...+|+.++||||+|++|++|++|||.++.. ..++++. .++++.++ |++++++.++++|.+|||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~~l~~~~~~~~~~LSg 228 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAA-------LWDEVKDDLDKAGNALSG 228 (329)
T ss_pred cchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcC-------CcchhhhhhhCCcccCCH
Confidence 456788999999999999999999999997632 2444444 33444444 345667889999999999
Q ss_pred HHHHHHHHHHHHhCCCCCC
Q 007122 599 GEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 599 GQrQRlaiARAll~~p~IL 617 (617)
|||||++||||++++|+||
T Consensus 229 GqkqRl~LARAl~~~p~Il 247 (329)
T PRK14257 229 GQQQRLCIARAIALEPEVL 247 (329)
T ss_pred HHHHHHHHHHHHHhCCCEE
Confidence 9999999999999999985
No 51
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-35 Score=278.15 Aligned_cols=152 Identities=33% Similarity=0.578 Sum_probs=137.2
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCC-----CeEEECCEeCCC--CCHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS-----GSIRIDGQDICE--VTLES 530 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~-----G~I~idG~~i~~--~~~~~ 530 (617)
.++++|++|-|. ++.+|+|||++|++++.+|++|||||||||+++.+-|..+..+ |+|.++|.|+.+ ++.-+
T Consensus 7 ~~~~~~l~~yYg-~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~ 85 (253)
T COG1117 7 AIEVRDLNLYYG-DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVE 85 (253)
T ss_pred eeEecceeEEEC-chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHH
Confidence 699999999996 6689999999999999999999999999999999999999887 999999999976 57889
Q ss_pred HhcceEEEccCCCcccccHHHHHhcCCC------CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 007122 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL------SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (617)
Q Consensus 531 lr~~i~~V~Qd~~LF~gTIreNI~~g~~------~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRl 604 (617)
+|+++|+|+|.|--|..||+||+.||-. ..-||-++++++.|+|+|-+.. .+.+.+..|||||+|||
T Consensus 86 lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQRL 158 (253)
T COG1117 86 LRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQRL 158 (253)
T ss_pred HHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHHHH
Confidence 9999999999999999999999999831 1235668899999999998765 25578889999999999
Q ss_pred HHHHHHhCCCCCC
Q 007122 605 ALARAFLKAPPIL 617 (617)
Q Consensus 605 aiARAll~~p~IL 617 (617)
||||||.-+|+||
T Consensus 159 cIARalAv~PeVl 171 (253)
T COG1117 159 CIARALAVKPEVL 171 (253)
T ss_pred HHHHHHhcCCcEE
Confidence 9999999999986
No 52
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=9.9e-36 Score=273.52 Aligned_cols=148 Identities=36% Similarity=0.590 Sum_probs=134.9
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHH---HHhcce
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE---SLRKSI 535 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~---~lr~~i 535 (617)
|+|+||+.+|+++.++|+|+||+|++||.+-++||||||||||+|||++...|+.|+|.++|.|+..+..+ .+|++|
T Consensus 2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~I 81 (223)
T COG2884 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQI 81 (223)
T ss_pred eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhee
Confidence 89999999999888899999999999999999999999999999999999999999999999999988855 589999
Q ss_pred EEEccCCCcc-cccHHHHHhcCC-----C-CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 007122 536 GVVPQDTVLF-NDTIFHNIRYGR-----L-SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (617)
Q Consensus 536 ~~V~Qd~~LF-~gTIreNI~~g~-----~-~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiAR 608 (617)
|+|+||.-|. +-|+.||++|.- + ..-.+++.++++.+||.+-...|| ..|||||+||+||||
T Consensus 82 GvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaIAR 150 (223)
T COG2884 82 GVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAIAR 150 (223)
T ss_pred eeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHHHH
Confidence 9999999877 669999998853 2 223567889999999999999988 469999999999999
Q ss_pred HHhCCCCCC
Q 007122 609 AFLKAPPIL 617 (617)
Q Consensus 609 All~~p~IL 617 (617)
|++.+|++|
T Consensus 151 AiV~~P~vL 159 (223)
T COG2884 151 AIVNQPAVL 159 (223)
T ss_pred HHccCCCeE
Confidence 999999986
No 53
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.1e-34 Score=287.86 Aligned_cols=159 Identities=41% Similarity=0.639 Sum_probs=150.0
Q ss_pred ceEEEeEEEeecC-CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 007122 458 SIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~ 536 (617)
.|+++|++++|++ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...++++++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 6899999999985 358999999999999999999999999999999999999999999999999999989889999999
Q ss_pred EEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCC
Q 007122 537 VVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPI 616 (617)
Q Consensus 537 ~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~I 616 (617)
|++|++.+|++|++|||.+..+ .+++++.++++..++.+++..+|.|++|.+++...+||||||||++||||++++|++
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999987653 567889999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 007122 617 L 617 (617)
Q Consensus 617 L 617 (617)
|
T Consensus 161 l 161 (221)
T cd03244 161 L 161 (221)
T ss_pred E
Confidence 5
No 54
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-34 Score=289.66 Aligned_cols=160 Identities=51% Similarity=0.828 Sum_probs=150.3
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++|++|+|++.+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|++++|
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 68999999999755579999999999999999999999999999999999999999999999999998888889999999
Q ss_pred EccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 538 VPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 538 V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
++|++.+|++|++||+.++.+...++++.++++..++.++++.+|.|+++.++.....||||||||++|||||+.+|++|
T Consensus 82 ~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ll 161 (229)
T cd03254 82 VLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKIL 161 (229)
T ss_pred ecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999886655677888888999999999999999999999999999999999999999999999975
No 55
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.3e-34 Score=290.33 Aligned_cols=159 Identities=43% Similarity=0.696 Sum_probs=147.8
Q ss_pred eEEEeEEEeecC-CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 459 IQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 459 I~~~nvsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
|+++|++++|++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 578999999974 4689999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 538 VPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 538 V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
+||++.+|+.|++|||.++.+..+.+++.++++..+++++++.+|.|+++.......+||||||||++||||++.+|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999999999999999876555667777888888999999999999999999999999999999999999999999975
No 56
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-34 Score=288.26 Aligned_cols=159 Identities=73% Similarity=1.079 Sum_probs=149.5
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|+++|++++|++++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 57899999997556799999999999999999999999999999999999999999999999999998888899999999
Q ss_pred ccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 539 PQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 539 ~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
+|++.+|++|++||+.++.+..+++++.++++.+++.+.+..+|.|++|.+..+..+||||||||++|||||+++|++|
T Consensus 81 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 81 PQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred CCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999886666677788888888999999999999999999999999999999999999999999975
No 57
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-34 Score=272.11 Aligned_cols=148 Identities=35% Similarity=0.599 Sum_probs=127.9
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCC-CCCHHHHhcceE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC-EVTLESLRKSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~-~~~~~~lr~~i~ 536 (617)
.|+++||+.+|. +..||+|||++|++||.++|+||||||||||++.|.||-+|++|+|.+||.++. +.+...+|+++|
T Consensus 2 mi~i~~l~K~fg-~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 2 MIEIKNLSKSFG-DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred eEEEEeeeEEeC-CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 489999999996 568999999999999999999999999999999999999999999999998773 347889999999
Q ss_pred EEccCCCcc-cccHHHHHhcCCC---CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 007122 537 VVPQDTVLF-NDTIFHNIRYGRL---SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (617)
Q Consensus 537 ~V~Qd~~LF-~gTIreNI~~g~~---~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiAR 608 (617)
+|+|+..|| .-|+.||++++.- ..+. +.-.+.++++|+.|-.+..| .+|||||+||+||||
T Consensus 81 mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAIAR 149 (240)
T COG1126 81 MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAIAR 149 (240)
T ss_pred eecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHHHH
Confidence 999999999 6799999998721 1222 33445667778887777766 579999999999999
Q ss_pred HHhCCCCCC
Q 007122 609 AFLKAPPIL 617 (617)
Q Consensus 609 All~~p~IL 617 (617)
||.-+|+++
T Consensus 150 ALaM~P~vm 158 (240)
T COG1126 150 ALAMDPKVM 158 (240)
T ss_pred HHcCCCCEE
Confidence 999999975
No 58
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=5.1e-34 Score=289.39 Aligned_cols=161 Identities=32% Similarity=0.575 Sum_probs=149.7
Q ss_pred CcceEEEeEEEeecCC-cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 007122 456 GGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534 (617)
Q Consensus 456 ~~~I~~~nvsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~ 534 (617)
.+.|+++|++++|++. .++|+|+||+|+|||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+++.
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 4689999999999753 579999999999999999999999999999999999999999999999999999998899999
Q ss_pred eEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCC
Q 007122 535 IGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (617)
Q Consensus 535 i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p 614 (617)
++||+|++.+|++|++||+.+.. ...+++++++++.++++++++.+|.|++|.+++.+.+||||||||++||||++++|
T Consensus 97 i~~v~q~~~l~~~tv~~nl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 97 LSIILQDPILFSGSIRFNLDPEC-KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred EEEECCCCcccccHHHHhcCcCC-CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999997653 23466788889999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 007122 615 PIL 617 (617)
Q Consensus 615 ~IL 617 (617)
++|
T Consensus 176 ~ll 178 (257)
T cd03288 176 SIL 178 (257)
T ss_pred CEE
Confidence 975
No 59
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-34 Score=294.50 Aligned_cols=146 Identities=34% Similarity=0.585 Sum_probs=131.4
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++||+..|++.. +++|+||+|+.||.++|+|||||||||++++|+||.+|++|+|.|||.++.++++++ +.||+
T Consensus 3 ~i~l~~v~K~yg~~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIAM 79 (338)
T ss_pred EEEEeeeEEEcCCce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEEE
Confidence 599999999997554 999999999999999999999999999999999999999999999999999999887 67999
Q ss_pred EccCCCcccc-cHHHHHhcCCCC------CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 007122 538 VPQDTVLFND-TIFHNIRYGRLS------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (617)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~~------~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAl 610 (617)
|+|+..||.- |++|||.|+-.. .-++++.++++..++.+.+++.| ..||||||||+||||||
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARAL 148 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHHH
Confidence 9999999954 999999998432 22567788888888888888766 57999999999999999
Q ss_pred hCCCCCC
Q 007122 611 LKAPPIL 617 (617)
Q Consensus 611 l~~p~IL 617 (617)
+++|+++
T Consensus 149 Vr~P~v~ 155 (338)
T COG3839 149 VRKPKVF 155 (338)
T ss_pred hcCCCEE
Confidence 9999864
No 60
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=7.6e-31 Score=276.33 Aligned_cols=298 Identities=19% Similarity=0.247 Sum_probs=212.1
Q ss_pred HHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 310 AMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGI 389 (617)
Q Consensus 310 ~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 389 (617)
+.++..++......+...|.+.|..|+.++.+....+...++..+...+...+.-++.++.+++-....+...++.+.-+
T Consensus 256 ~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~ 335 (659)
T KOG0060|consen 256 EQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPF 335 (659)
T ss_pred HHHHhhcchhhheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeee
Confidence 34445556666667788899999999999998888777777776666555555555555555432111111111111111
Q ss_pred ----hcCCcCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-------------cC---
Q 007122 390 ----LSGEMTVGDLVMVNG----LLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADI-------------QD--- 445 (617)
Q Consensus 390 ----~~g~lt~G~l~~~~~----~~~~l~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~-------------~~--- 445 (617)
..+.++..++...+. ++..+...+..+.....++.+-.+-..||.++++.-.+. +.
T Consensus 336 Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~ 415 (659)
T KOG0060|consen 336 FSGHVYDDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAE 415 (659)
T ss_pred ecccccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhh
Confidence 235677777665432 233445555566666666666677778887775432111 00
Q ss_pred -----CCCCCCCCCCCcceEEEeEEEeecC-CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEEC
Q 007122 446 -----RDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519 (617)
Q Consensus 446 -----~~~~~~~~~~~~~I~~~nvsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~id 519 (617)
..+.....+.+..|+|++|++.-|+ +.-+.+|+||+|+.|+.+.|+||||||||+|++.|.|+++..+|.+.--
T Consensus 416 ~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~ 495 (659)
T KOG0060|consen 416 WGLSLPPGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKP 495 (659)
T ss_pred hccCCCCCCcccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEec
Confidence 0001112233468999999999886 5567778999999999999999999999999999999999999999763
Q ss_pred CEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCC-------CCCCHHHHHHHHHHHcHHHHHHhCCCCcccccc-C
Q 007122 520 GQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGR-------LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG-E 591 (617)
Q Consensus 520 G~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~-------~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vg-e 591 (617)
...-. +.+-||||.|+.-.||+||-+.|.. ..++|+++.+.++.+++.+.++. .+|+|+++- +
T Consensus 496 ~~~~~--------~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~d 566 (659)
T KOG0060|consen 496 TDGGP--------KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLDQQVDWD 566 (659)
T ss_pred ccCCC--------CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhcc
Confidence 31110 3489999999999999999998862 24789999999999999875555 789998776 7
Q ss_pred CCCCCChHHHHHHHHHHHHhCCCCC
Q 007122 592 RGLKLSGGEKQRVALARAFLKAPPI 616 (617)
Q Consensus 592 ~G~~LSGGQrQRlaiARAll~~p~I 616 (617)
...-||+||+||+|.||-+|++|++
T Consensus 567 W~dvLS~GEqQRLa~ARLfy~kPk~ 591 (659)
T KOG0060|consen 567 WMDVLSPGEQQRLAFARLFYHKPKF 591 (659)
T ss_pred HHhhcCHHHHHHHHHHHHHhcCCce
Confidence 7888999999999999999999985
No 61
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1e-33 Score=280.67 Aligned_cols=160 Identities=46% Similarity=0.711 Sum_probs=148.4
Q ss_pred ceEEEeEEEeecCC-cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 007122 458 SIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~ 536 (617)
+|+++|++++|++. .++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 58999999999753 57999999999999999999999999999999999999999999999999998888778888999
Q ss_pred EEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCC
Q 007122 537 VVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPI 616 (617)
Q Consensus 537 ~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~I 616 (617)
|++|++.+|..|++||+.++.+..+++++.++++..++.+.++.+|.|++|.+.+...+||||||||++||||++.+|++
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 161 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI 161 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999887554556678888999999999999999999999999999999999999999999999997
Q ss_pred C
Q 007122 617 L 617 (617)
Q Consensus 617 L 617 (617)
|
T Consensus 162 l 162 (220)
T cd03245 162 L 162 (220)
T ss_pred E
Confidence 5
No 62
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-33 Score=282.94 Aligned_cols=159 Identities=55% Similarity=0.902 Sum_probs=147.7
Q ss_pred eEEEeEEEeecCC-cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 459 IQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 459 I~~~nvsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
|+++|++++|++. .++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...++++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 5799999999753 379999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 538 VPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 538 V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
++|++.+|+.|++||+.++.+....+++.+.++..+++++++.+|.|+++.++.....||||||||++|||||+++|++|
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999886555667777888888999999999999999999999999999999999999999999975
No 63
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-34 Score=276.46 Aligned_cols=147 Identities=36% Similarity=0.578 Sum_probs=128.5
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|+|+|||++|. ++.+++|+||+|++||.+.++|||||||||++|++.|+++|++|+|++||.++++++...+|++||||
T Consensus 2 I~~~nvsk~y~-~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 2 IEFENVSKRYG-NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred ceeeeeehhcC-CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 89999999997 66899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcc-cccHHHHHhcCC--CCCCH----HHHHHHHHHHcHH--HHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 007122 539 PQDTVLF-NDTIFHNIRYGR--LSATE----EEVYDAARRAAIH--DTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (617)
Q Consensus 539 ~Qd~~LF-~gTIreNI~~g~--~~~~d----e~i~~a~~~a~l~--~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARA 609 (617)
-|..-|| +-||.|||++-. ...+. +++.+.++.++|+ ++..+.| ..|||||+||+.+|||
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~RA 149 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVARA 149 (309)
T ss_pred hhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHHHH
Confidence 9999999 779999997631 12333 4455556666664 3555554 5799999999999999
Q ss_pred HhCCCCCC
Q 007122 610 FLKAPPIL 617 (617)
Q Consensus 610 ll~~p~IL 617 (617)
|..+|+||
T Consensus 150 LAadP~il 157 (309)
T COG1125 150 LAADPPIL 157 (309)
T ss_pred HhcCCCeE
Confidence 99999985
No 64
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.6e-33 Score=280.53 Aligned_cols=162 Identities=41% Similarity=0.666 Sum_probs=147.3
Q ss_pred CcceEEEeEEEeecCC--cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhc
Q 007122 456 GGSIQFDNVHFSYLTE--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533 (617)
Q Consensus 456 ~~~I~~~nvsF~Y~~~--~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~ 533 (617)
.+.|+++|++++|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 3579999999999742 47999999999999999999999999999999999999999999999999998888888889
Q ss_pred ceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCC
Q 007122 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (617)
Q Consensus 534 ~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~ 613 (617)
+++|++|++.+|+.|++||+.++......+++.+..+..+++++++.+|.|+++.+.+...+||||||||++||||++++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999987544455566666677788999999999999999999999999999999999999999
Q ss_pred CCCC
Q 007122 614 PPIL 617 (617)
Q Consensus 614 p~IL 617 (617)
|++|
T Consensus 169 p~ll 172 (226)
T cd03248 169 PQVL 172 (226)
T ss_pred CCEE
Confidence 9975
No 65
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=2.6e-33 Score=281.21 Aligned_cols=159 Identities=55% Similarity=0.895 Sum_probs=146.6
Q ss_pred eEEEeEEEeecC--CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 007122 459 IQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (617)
Q Consensus 459 I~~~nvsF~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~ 536 (617)
|+++|++++|++ +.++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...++++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 578999999974 357999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCC
Q 007122 537 VVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPI 616 (617)
Q Consensus 537 ~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~I 616 (617)
|++|++.+|+.|++||+.++.+....+++.+.++..++.+++..+|.|+++.+.....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655566677777888899999999999999999999999999999999999999999997
Q ss_pred C
Q 007122 617 L 617 (617)
Q Consensus 617 L 617 (617)
|
T Consensus 161 l 161 (238)
T cd03249 161 L 161 (238)
T ss_pred E
Confidence 5
No 66
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.7e-33 Score=274.41 Aligned_cols=145 Identities=36% Similarity=0.563 Sum_probs=134.8
Q ss_pred eEEEeEEEeecCC----cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 007122 459 IQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534 (617)
Q Consensus 459 I~~~nvsF~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~ 534 (617)
|+++||+++|++. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 5799999999754 4799999999999999999999999999999999999999999999999 6
Q ss_pred eEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCC
Q 007122 535 IGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (617)
Q Consensus 535 i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p 614 (617)
|+||+|+|.+|+.|++||+.++.. .++++..++++.+++.+++..+|.|++|.+.+....||||||||++||||++.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998743 4566777888888999999999999999999999999999999999999999999
Q ss_pred CCC
Q 007122 615 PIL 617 (617)
Q Consensus 615 ~IL 617 (617)
+++
T Consensus 147 ~ll 149 (204)
T cd03250 147 DIY 149 (204)
T ss_pred CEE
Confidence 975
No 67
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-33 Score=268.21 Aligned_cols=149 Identities=38% Similarity=0.587 Sum_probs=130.7
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCC---HHHHhcc
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT---LESLRKS 534 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~---~~~lr~~ 534 (617)
.|+++||+-.||++..+|+||||+|++||+|||+|+||||||||++.|.|+.+|++|+|.++|.++.... +..+|++
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence 5899999999998899999999999999999999999999999999999999999999999999999888 5678899
Q ss_pred eEEEccCCCccc-ccHHHHHhcCCCC-----------CCHH---HHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChH
Q 007122 535 IGVVPQDTVLFN-DTIFHNIRYGRLS-----------ATEE---EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGG 599 (617)
Q Consensus 535 i~~V~Qd~~LF~-gTIreNI~~g~~~-----------~~de---~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGG 599 (617)
|||++|++-|-. -|+.+|+..|+-. .+.+ ...+|++++++.|..- .+-.+||||
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~LSGG 151 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTLSGG 151 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccCCcc
Confidence 999999999885 5899999877522 2333 3566777777776543 467899999
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 007122 600 EKQRVALARAFLKAPPIL 617 (617)
Q Consensus 600 QrQRlaiARAll~~p~IL 617 (617)
|+||++|||||.++|+|+
T Consensus 152 QQQRVaIARaL~Q~pkiI 169 (258)
T COG3638 152 QQQRVAIARALVQQPKII 169 (258)
T ss_pred hhHHHHHHHHHhcCCCEE
Confidence 999999999999999975
No 68
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-33 Score=278.06 Aligned_cols=148 Identities=36% Similarity=0.555 Sum_probs=127.7
Q ss_pred eEEEeEEEeecC----CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHH---HH
Q 007122 459 IQFDNVHFSYLT----ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE---SL 531 (617)
Q Consensus 459 I~~~nvsF~Y~~----~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~---~l 531 (617)
|+++||++.|+. ...+|+|+||+|++||+.+|+|+||+|||||++++-+|-.|++|+|.+||.|+..++.. .+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 899999999985 24799999999999999999999999999999999999999999999999999888855 56
Q ss_pred hcceEEEccCCCccc-ccHHHHHhcCCC--CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 007122 532 RKSIGVVPQDTVLFN-DTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (617)
Q Consensus 532 r~~i~~V~Qd~~LF~-gTIreNI~~g~~--~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRl 604 (617)
|++||+++|++-|++ -|+.||+.|.-. ..+. +++.+.++.+||.|.-+.- -.+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~y-----------P~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRY-----------PAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccC-----------chhcCcchhhHH
Confidence 889999999999997 899999998532 2233 3456666777777665554 478999999999
Q ss_pred HHHHHHhCCCCCC
Q 007122 605 ALARAFLKAPPIL 617 (617)
Q Consensus 605 aiARAll~~p~IL 617 (617)
+|||||..+|+||
T Consensus 151 aIARALa~~P~iL 163 (339)
T COG1135 151 AIARALANNPKIL 163 (339)
T ss_pred HHHHHHhcCCCEE
Confidence 9999999999986
No 69
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=5.3e-33 Score=275.18 Aligned_cols=158 Identities=28% Similarity=0.457 Sum_probs=142.7
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCH----HHHhcc
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL----ESLRKS 534 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~----~~lr~~ 534 (617)
+.+.|+.|+|+++.++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+. ...|+.
T Consensus 1 ~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 1 VQVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred CeeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 3578999999877789999999999999999999999999999999999999999999999998876543 345678
Q ss_pred eEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCC
Q 007122 535 IGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (617)
Q Consensus 535 i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p 614 (617)
++|++|++.+|+.|++|||.++.+ .++++..++++..++.++++.+|.|++|.++....+||||||||++||||++++|
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 999999999999999999998753 4566677888888999999999999999999999999999999999999999999
Q ss_pred CCC
Q 007122 615 PIL 617 (617)
Q Consensus 615 ~IL 617 (617)
++|
T Consensus 160 ~il 162 (218)
T cd03290 160 NIV 162 (218)
T ss_pred CEE
Confidence 975
No 70
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.2e-33 Score=269.30 Aligned_cols=149 Identities=36% Similarity=0.526 Sum_probs=121.4
Q ss_pred eEEEeEEEeecCC---cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHH---H-
Q 007122 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---L- 531 (617)
Q Consensus 459 I~~~nvsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~---l- 531 (617)
|+++||+..|..+ .++|+++||+|++||.+||+||||||||||+++|.|+..|++|.|.++|.|+..++.+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 6799999999743 37999999999999999999999999999999999999999999999999999998543 3
Q ss_pred hcceEEEccCCCcc-cccHHHHHhc----CCCCC--CHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 007122 532 RKSIGVVPQDTVLF-NDTIFHNIRY----GRLSA--TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (617)
Q Consensus 532 r~~i~~V~Qd~~LF-~gTIreNI~~----g~~~~--~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRl 604 (617)
|++||||+|+..|+ +-|++|||.+ ..... .++...+.++..++.+.... ..-..||||||||+
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~----------~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLK----------KKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhcc----------CCchhcCHHHHHHH
Confidence 56799999999988 5599999984 22111 13344455555566554431 23467999999999
Q ss_pred HHHHHHhCCCCCC
Q 007122 605 ALARAFLKAPPIL 617 (617)
Q Consensus 605 aiARAll~~p~IL 617 (617)
||||||+.+|+|+
T Consensus 152 AIARAL~~~P~ii 164 (226)
T COG1136 152 AIARALINNPKII 164 (226)
T ss_pred HHHHHHhcCCCeE
Confidence 9999999999985
No 71
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-33 Score=269.76 Aligned_cols=143 Identities=31% Similarity=0.473 Sum_probs=126.2
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.+++++|+.+|+. ..||+|+||+|++||+++|+||||||||||+++++||.+|++|+|.++|.++... ...++|
T Consensus 3 ~l~i~~v~~~f~~-~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~~ 76 (248)
T COG1116 3 LLEIEGVSKSFGG-VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIGY 76 (248)
T ss_pred eEEEEeeEEEeCc-eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEEE
Confidence 5899999999975 7899999999999999999999999999999999999999999999999987543 347999
Q ss_pred EccCCCccc-ccHHHHHhcCCCCC------CHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 007122 538 VPQDTVLFN-DTIFHNIRYGRLSA------TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (617)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~~~~------~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAl 610 (617)
|+|++.||. -|++||+.++-... .++.+.+.++.+||.+|-+..| ..||||||||+||||||
T Consensus 77 vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARAL 145 (248)
T COG1116 77 VFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARAL 145 (248)
T ss_pred EeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHHH
Confidence 999999995 59999999985421 2345778888888888877766 57999999999999999
Q ss_pred hCCCCCC
Q 007122 611 LKAPPIL 617 (617)
Q Consensus 611 l~~p~IL 617 (617)
+.+|+||
T Consensus 146 ~~~P~lL 152 (248)
T COG1116 146 ATRPKLL 152 (248)
T ss_pred hcCCCEE
Confidence 9999986
No 72
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=7.4e-33 Score=273.45 Aligned_cols=148 Identities=36% Similarity=0.576 Sum_probs=132.5
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.++++|++|+|+ ++++|+|+||+|++||.++|+||||||||||+|.|+|+.+|.+|+|++||.++.+++.+++.++++|
T Consensus 2 ~L~~~~ls~~y~-~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEEC-CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 479999999997 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCC-CcccccHHHHHhcCCCC---------C-CHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 007122 538 VPQDT-VLFNDTIFHNIRYGRLS---------A-TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606 (617)
Q Consensus 538 V~Qd~-~LF~gTIreNI~~g~~~---------~-~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlai 606 (617)
|||++ .-|.-|++|=+.+|+-. . +++.+.+|++..++.++.++ .-..||||||||+.|
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSGGerQrv~i 149 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSGGERQRVLI 149 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccChhHHHHHHH
Confidence 99995 67788999999998621 1 23357888999999887654 235699999999999
Q ss_pred HHHHhCCCCCC
Q 007122 607 ARAFLKAPPIL 617 (617)
Q Consensus 607 ARAll~~p~IL 617 (617)
||||.++|+||
T Consensus 150 ArALaQ~~~iL 160 (258)
T COG1120 150 ARALAQETPIL 160 (258)
T ss_pred HHHHhcCCCEE
Confidence 99999999986
No 73
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=7.7e-33 Score=284.99 Aligned_cols=146 Identities=34% Similarity=0.529 Sum_probs=131.2
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++||+.+|. +..+++|+||+|++||.+++.|||||||||++++|+||.+|++|+|.+||.|+.+++++. +.|++
T Consensus 5 ~l~i~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~k--R~ig~ 81 (352)
T COG3842 5 ALEIRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEK--RPIGM 81 (352)
T ss_pred eEEEEeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhh--cccce
Confidence 699999999997 678999999999999999999999999999999999999999999999999999988764 67999
Q ss_pred EccCCCcc-cccHHHHHhcCCC---CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 007122 538 VPQDTVLF-NDTIFHNIRYGRL---SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (617)
Q Consensus 538 V~Qd~~LF-~gTIreNI~~g~~---~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARA 609 (617)
|+|+..|| +-||+|||.||-. ...+ +.+.++++.+++.++-.+.| ..|||||+||+|||||
T Consensus 82 VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALARA 150 (352)
T COG3842 82 VFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALARA 150 (352)
T ss_pred eecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHHHH
Confidence 99999999 7899999999953 1222 36788888889888766654 6799999999999999
Q ss_pred HhCCCCCC
Q 007122 610 FLKAPPIL 617 (617)
Q Consensus 610 ll~~p~IL 617 (617)
|..+|++|
T Consensus 151 L~~~P~vL 158 (352)
T COG3842 151 LVPEPKVL 158 (352)
T ss_pred hhcCcchh
Confidence 99999876
No 74
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=8.7e-33 Score=273.24 Aligned_cols=148 Identities=36% Similarity=0.624 Sum_probs=125.7
Q ss_pred eEEEeEEEeecCC-cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHH---HHhcc
Q 007122 459 IQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE---SLRKS 534 (617)
Q Consensus 459 I~~~nvsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~---~lr~~ 534 (617)
|+++|++++|+++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 7899999999754 5799999999999999999999999999999999999999999999999999876643 47889
Q ss_pred eEEEccCCCccc-ccHHHHHhcCCC------CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 007122 535 IGVVPQDTVLFN-DTIFHNIRYGRL------SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALA 607 (617)
Q Consensus 535 i~~V~Qd~~LF~-gTIreNI~~g~~------~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiA 607 (617)
++||||++.+|. .|++||+.++.. ...++++.++++..++.++.+..| .+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999986 599999987421 112345667777777766555443 47999999999999
Q ss_pred HHHhCCCCCC
Q 007122 608 RAFLKAPPIL 617 (617)
Q Consensus 608 RAll~~p~IL 617 (617)
|||+.+|++|
T Consensus 151 ral~~~p~ll 160 (216)
T TIGR00960 151 RAIVHKPPLL 160 (216)
T ss_pred HHHhcCCCEE
Confidence 9999999985
No 75
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=4.4e-32 Score=266.47 Aligned_cols=145 Identities=35% Similarity=0.558 Sum_probs=127.0
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++|++|+|.++ ++|+|+||+|++|++++|+||+|||||||+|+++|+.+|++|+|.++|.+.++... +.+|||
T Consensus 4 ~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~IgY 79 (254)
T COG1121 4 MIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIGY 79 (254)
T ss_pred EEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEEE
Confidence 69999999999866 79999999999999999999999999999999999999999999999988766543 568999
Q ss_pred EccCC---CcccccHHHHHhcCCCC----------CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 007122 538 VPQDT---VLFNDTIFHNIRYGRLS----------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (617)
Q Consensus 538 V~Qd~---~LF~gTIreNI~~g~~~----------~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRl 604 (617)
|||.. +=|.-|++|=+.+|+.. .+.+++.+|++.+++.++..+ ++| .|||||+||+
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-------~i~----~LSGGQ~QRV 148 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-------QIG----ELSGGQKQRV 148 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-------ccc----ccCcHHHHHH
Confidence 99944 67999999999988532 124889999999999987544 344 5999999999
Q ss_pred HHHHHHhCCCCCC
Q 007122 605 ALARAFLKAPPIL 617 (617)
Q Consensus 605 aiARAll~~p~IL 617 (617)
.|||||+.+|++|
T Consensus 149 ~lARAL~~~p~ll 161 (254)
T COG1121 149 LLARALAQNPDLL 161 (254)
T ss_pred HHHHHhccCCCEE
Confidence 9999999999985
No 76
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.1e-31 Score=279.41 Aligned_cols=154 Identities=26% Similarity=0.375 Sum_probs=127.7
Q ss_pred cceEEEeEEEeecCC----cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCC------
Q 007122 457 GSIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV------ 526 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~------ 526 (617)
..|+++||+|+|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 369999999999742 4799999999999999999999999999999999999999999999999998653
Q ss_pred ----------CHHHHhcceEEEccCC--CcccccHHHHHhcCCC--CCCHHHHHHHHHHHcHHHHHHhCCCCcc-ccccC
Q 007122 527 ----------TLESLRKSIGVVPQDT--VLFNDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYS-TVVGE 591 (617)
Q Consensus 527 ----------~~~~lr~~i~~V~Qd~--~LF~gTIreNI~~g~~--~~~de~i~~a~~~a~l~~~I~~lp~Gld-T~vge 591 (617)
+...+|++++||+|+| .+|+.|++|||.++.. +.++++..+ . +.++++.+ |++ ....+
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~--~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK---L--AKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH---H--HHHHHHHc--CCChhHhcC
Confidence 3567899999999998 7999999999988732 234433322 2 22444444 454 45677
Q ss_pred CCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 592 RGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 592 ~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
.+.+||||||||++|||||+++|+||
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iL 198 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEIL 198 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 88999999999999999999999985
No 77
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.97 E-value=4.7e-32 Score=270.07 Aligned_cols=149 Identities=36% Similarity=0.615 Sum_probs=125.7
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCC-----CCCCCeEEECCEeCCCCC--HHHH
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF-----DTHSGSIRIDGQDICEVT--LESL 531 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~-----~p~~G~I~idG~~i~~~~--~~~l 531 (617)
|+++||+|+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|++ +|++|+|.++|.++.+.+ ...+
T Consensus 1 i~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYGD-KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 578999999964 57999999999999999999999999999999999999 999999999999998877 5678
Q ss_pred hcceEEEccCCCcccccHHHHHhcCCCC--C-----CHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 007122 532 RKSIGVVPQDTVLFNDTIFHNIRYGRLS--A-----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (617)
Q Consensus 532 r~~i~~V~Qd~~LF~gTIreNI~~g~~~--~-----~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRl 604 (617)
+++++||||++.+|+.|++||+.++... . .++++.++++..++.+.+.+.++ ..+||||||||+
T Consensus 80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qrv 150 (227)
T cd03260 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQRL 150 (227)
T ss_pred HhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHHH
Confidence 8899999999999999999999875321 1 12345566666666554443321 578999999999
Q ss_pred HHHHHHhCCCCCC
Q 007122 605 ALARAFLKAPPIL 617 (617)
Q Consensus 605 aiARAll~~p~IL 617 (617)
+|||||+++|++|
T Consensus 151 ~la~al~~~p~ll 163 (227)
T cd03260 151 CLARALANEPEVL 163 (227)
T ss_pred HHHHHHhcCCCEE
Confidence 9999999999975
No 78
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=8.4e-32 Score=275.49 Aligned_cols=149 Identities=29% Similarity=0.535 Sum_probs=130.4
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++||+|+|+++.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...++++++|
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 48999999999755679999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EccCC--CcccccHHHHHhcCCC--CCC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 007122 538 VPQDT--VLFNDTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (617)
Q Consensus 538 V~Qd~--~LF~gTIreNI~~g~~--~~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARA 609 (617)
|+|+| .+|..|++||+.++.. ..+ ++++.++++..++.++.++.| ..||||||||++||||
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~lara 152 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAGV 152 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99998 6889999999998632 122 245667777777776665554 3799999999999999
Q ss_pred HhCCCCCC
Q 007122 610 FLKAPPIL 617 (617)
Q Consensus 610 ll~~p~IL 617 (617)
|+.+|++|
T Consensus 153 L~~~p~ll 160 (274)
T PRK13647 153 LAMDPDVI 160 (274)
T ss_pred HHcCCCEE
Confidence 99999985
No 79
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.97 E-value=6e-32 Score=266.88 Aligned_cols=148 Identities=36% Similarity=0.592 Sum_probs=126.1
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHH---HHhcce
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE---SLRKSI 535 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~---~lr~~i 535 (617)
|+++|++++|+++.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+++.. .+++++
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 78999999996456899999999999999999999999999999999999999999999999999887643 467899
Q ss_pred EEEccCCCccc-ccHHHHHhcCC------CCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 007122 536 GVVPQDTVLFN-DTIFHNIRYGR------LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (617)
Q Consensus 536 ~~V~Qd~~LF~-gTIreNI~~g~------~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiAR 608 (617)
+|++|++.+|. .|++||+.++. +...++++.++++..++.+.+.+.| ..||||||||++|||
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la~ 150 (214)
T TIGR02673 82 GVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAIAR 150 (214)
T ss_pred EEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999995 69999998742 1112345667777777766554443 479999999999999
Q ss_pred HHhCCCCCC
Q 007122 609 AFLKAPPIL 617 (617)
Q Consensus 609 All~~p~IL 617 (617)
||+++|++|
T Consensus 151 al~~~p~ll 159 (214)
T TIGR02673 151 AIVNSPPLL 159 (214)
T ss_pred HHhCCCCEE
Confidence 999999975
No 80
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=1.4e-31 Score=262.94 Aligned_cols=142 Identities=44% Similarity=0.728 Sum_probs=126.1
Q ss_pred cceEEEeEEEeecCC-cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 007122 457 GSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i 535 (617)
+.|+++|++++|++. .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 579999999999753 5899999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCC
Q 007122 536 GVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (617)
Q Consensus 536 ~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~ 615 (617)
+||+|++.+|++|++|||.+.+. .+++++.++++ +.+....|||||+||++||||++.+|+
T Consensus 85 ~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 85 TIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999987642 44454444333 345778999999999999999999999
Q ss_pred CC
Q 007122 616 IL 617 (617)
Q Consensus 616 IL 617 (617)
+|
T Consensus 146 ll 147 (207)
T cd03369 146 VL 147 (207)
T ss_pred EE
Confidence 75
No 81
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.97 E-value=4.3e-32 Score=247.55 Aligned_cols=143 Identities=37% Similarity=0.551 Sum_probs=126.8
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|.+++|.|+|.... =.++++|++||++||+||||||||||++|++||..|.+|+|.|||+|.....+.+ +-++++
T Consensus 2 l~L~~V~~~y~~~~---~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHLP---MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--RPVSML 76 (231)
T ss_pred ccccceEEeeCcce---EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--CChhhh
Confidence 57889999996432 2678999999999999999999999999999999999999999999998877765 469999
Q ss_pred ccCCCcc-cccHHHHHhcCC-CC-----CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh
Q 007122 539 PQDTVLF-NDTIFHNIRYGR-LS-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (617)
Q Consensus 539 ~Qd~~LF-~gTIreNI~~g~-~~-----~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll 611 (617)
+||.-|| .-|+.+||.+|. |. ...+.+..++.++|+.++.++||. .||||||||+||||+|+
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARclv 145 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLV 145 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHHh
Confidence 9999999 569999999995 32 234678899999999999999994 68999999999999999
Q ss_pred CCCCCC
Q 007122 612 KAPPIL 617 (617)
Q Consensus 612 ~~p~IL 617 (617)
|+.|||
T Consensus 146 R~~Pil 151 (231)
T COG3840 146 REQPIL 151 (231)
T ss_pred ccCCeE
Confidence 999885
No 82
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.97 E-value=4.4e-32 Score=266.00 Aligned_cols=144 Identities=35% Similarity=0.536 Sum_probs=123.3
Q ss_pred EEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc
Q 007122 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP 539 (617)
Q Consensus 460 ~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~ 539 (617)
+++|++++|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+ ..++++++|++
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~~ 77 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYVM 77 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEEe
Confidence 468999999743689999999999999999999999999999999999999999999999998854 45678899999
Q ss_pred cCC--CcccccHHHHHhcCCCCC--CHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCC
Q 007122 540 QDT--VLFNDTIFHNIRYGRLSA--TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (617)
Q Consensus 540 Qd~--~LF~gTIreNI~~g~~~~--~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~ 615 (617)
|++ .+|+.|++||+.++.+.. .++++.++++..++.++.++.| ..||||||||++||||++++|+
T Consensus 78 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p~ 146 (205)
T cd03226 78 QDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSGKD 146 (205)
T ss_pred cChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhCCC
Confidence 998 478899999998864322 2356778888888776655544 4799999999999999999999
Q ss_pred CC
Q 007122 616 IL 617 (617)
Q Consensus 616 IL 617 (617)
+|
T Consensus 147 ll 148 (205)
T cd03226 147 LL 148 (205)
T ss_pred EE
Confidence 75
No 83
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.97 E-value=8.6e-32 Score=266.51 Aligned_cols=148 Identities=36% Similarity=0.525 Sum_probs=121.4
Q ss_pred eEEEeEEEeecCC---cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHH----H
Q 007122 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES----L 531 (617)
Q Consensus 459 I~~~nvsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~----l 531 (617)
|+++||+++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 5789999999753 68999999999999999999999999999999999999999999999999998876432 4
Q ss_pred hcceEEEccCCCcccc-cHHHHHhcCCC--CCC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 007122 532 RKSIGVVPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (617)
Q Consensus 532 r~~i~~V~Qd~~LF~g-TIreNI~~g~~--~~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRl 604 (617)
+++++||+|++.+|.+ |++||+.++.. ... ++++.++++..++ +........+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGL-----------GDRLNHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCC-----------chhhhcChhhcCHHHHHHH
Confidence 6789999999999976 99999987532 111 1233344444443 3334445578999999999
Q ss_pred HHHHHHhCCCCCC
Q 007122 605 ALARAFLKAPPIL 617 (617)
Q Consensus 605 aiARAll~~p~IL 617 (617)
+|||||+.+|++|
T Consensus 150 ~la~al~~~p~ll 162 (218)
T cd03255 150 AIARALANDPKII 162 (218)
T ss_pred HHHHHHccCCCEE
Confidence 9999999999985
No 84
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1e-31 Score=269.13 Aligned_cols=147 Identities=37% Similarity=0.565 Sum_probs=121.8
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCH---HHHhcce
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL---ESLRKSI 535 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~---~~lr~~i 535 (617)
|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. ..+|+++
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFG-GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 57899999996 4579999999999999999999999999999999999999999999999999988764 5678899
Q ss_pred EEEccCCCcccc-cHHHHHhcCCC---CCCHH----HHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 007122 536 GVVPQDTVLFND-TIFHNIRYGRL---SATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALA 607 (617)
Q Consensus 536 ~~V~Qd~~LF~g-TIreNI~~g~~---~~~de----~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiA 607 (617)
+||||++.+|.. |++||+.++.. ..+.+ ++.++++..++.++. ......||||||||++||
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~ia 148 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-----------DLYPAELSGGMKKRVALA 148 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHH
Confidence 999999999986 99999987521 12332 234444444443332 233457999999999999
Q ss_pred HHHhCCCCCC
Q 007122 608 RAFLKAPPIL 617 (617)
Q Consensus 608 RAll~~p~IL 617 (617)
|||+++|+||
T Consensus 149 ~al~~~p~ll 158 (235)
T cd03261 149 RALALDPELL 158 (235)
T ss_pred HHHhcCCCEE
Confidence 9999999985
No 85
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=8.6e-32 Score=283.95 Aligned_cols=147 Identities=32% Similarity=0.526 Sum_probs=128.0
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++|++++|+++.++|+|+||+|++||.++|+||||||||||+++|+|+.+|++|+|.+||.++.++++. +++|+|
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 489999999996456899999999999999999999999999999999999999999999999999887764 478999
Q ss_pred EccCCCccc-ccHHHHHhcCCC--CCC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 007122 538 VPQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (617)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~~--~~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAl 610 (617)
|+|++.+|. .|++|||.|+.. ..+ ++++.++++..++.++.++.| .+||||||||++|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 999999995 699999998742 122 244667777778877766655 48999999999999999
Q ss_pred hCCCCCC
Q 007122 611 LKAPPIL 617 (617)
Q Consensus 611 l~~p~IL 617 (617)
+++|++|
T Consensus 150 ~~~P~ll 156 (356)
T PRK11650 150 VREPAVF 156 (356)
T ss_pred hcCCCEE
Confidence 9999985
No 86
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.97 E-value=8.6e-32 Score=281.78 Aligned_cols=148 Identities=32% Similarity=0.502 Sum_probs=125.8
Q ss_pred eEEEeEEEeecC---CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHH---Hh
Q 007122 459 IQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---LR 532 (617)
Q Consensus 459 I~~~nvsF~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~---lr 532 (617)
|+++||+++|+. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++.++ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999963 247999999999999999999999999999999999999999999999999999887654 57
Q ss_pred cceEEEccCCCccc-ccHHHHHhcCCC--CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 007122 533 KSIGVVPQDTVLFN-DTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605 (617)
Q Consensus 533 ~~i~~V~Qd~~LF~-gTIreNI~~g~~--~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRla 605 (617)
++|+||||++.+|. .|++||+.++.. ..+. +++.++++.+++.+..+.. ...||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~-----------~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSY-----------PSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence 89999999999995 799999987531 2222 3456667777776554433 4689999999999
Q ss_pred HHHHHhCCCCCC
Q 007122 606 LARAFLKAPPIL 617 (617)
Q Consensus 606 iARAll~~p~IL 617 (617)
|||||+.+|++|
T Consensus 151 IARAL~~~P~iL 162 (343)
T TIGR02314 151 IARALASNPKVL 162 (343)
T ss_pred HHHHHHhCCCEE
Confidence 999999999985
No 87
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.3e-31 Score=274.81 Aligned_cols=149 Identities=36% Similarity=0.533 Sum_probs=128.9
Q ss_pred ceEEEeEEEeecC--CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 007122 458 SIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (617)
Q Consensus 458 ~I~~~nvsF~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i 535 (617)
.|+++||+++|++ ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 4899999999974 24699999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEccCC--CcccccHHHHHhcCCC--CCC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 007122 536 GVVPQDT--VLFNDTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALA 607 (617)
Q Consensus 536 ~~V~Qd~--~LF~gTIreNI~~g~~--~~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiA 607 (617)
+||+|+| .++..|++|||.++.. ..+ ++++.++++..++.++.+..| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 4677899999998632 123 244667777777776655543 58999999999999
Q ss_pred HHHhCCCCCC
Q 007122 608 RAFLKAPPIL 617 (617)
Q Consensus 608 RAll~~p~IL 617 (617)
|||+++|++|
T Consensus 153 ral~~~p~lL 162 (279)
T PRK13650 153 GAVAMRPKII 162 (279)
T ss_pred HHHHcCCCEE
Confidence 9999999985
No 88
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.2e-31 Score=270.45 Aligned_cols=152 Identities=30% Similarity=0.517 Sum_probs=129.1
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC---CCCCeEEECCEeCCCCCHHHHhcc
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD---THSGSIRIDGQDICEVTLESLRKS 534 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~---p~~G~I~idG~~i~~~~~~~lr~~ 534 (617)
.|+++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.+.+...+|++
T Consensus 2 ~~~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 2 IAKTTNLNLFYG-KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred ceeeeeeEEEEC-CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 488999999997 4689999999999999999999999999999999999985 699999999999998888888999
Q ss_pred eEEEccCCCcccccHHHHHhcCCC--------CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 007122 535 IGVVPQDTVLFNDTIFHNIRYGRL--------SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606 (617)
Q Consensus 535 i~~V~Qd~~LF~gTIreNI~~g~~--------~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlai 606 (617)
++|+||++.+|+.|++||+.++.. ...++++.++++..++.+++.. ...+.+.+||||||||++|
T Consensus 81 i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRLCI 153 (246)
T ss_pred EEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHHHH
Confidence 999999999999999999987521 1112345566666666554432 2455678999999999999
Q ss_pred HHHHhCCCCCC
Q 007122 607 ARAFLKAPPIL 617 (617)
Q Consensus 607 ARAll~~p~IL 617 (617)
|||++++|++|
T Consensus 154 aral~~~p~ll 164 (246)
T PRK14269 154 ARALAIKPKLL 164 (246)
T ss_pred HHHHhcCCCEE
Confidence 99999999975
No 89
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.97 E-value=1.3e-31 Score=264.56 Aligned_cols=148 Identities=37% Similarity=0.583 Sum_probs=123.4
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCH---HHHhcce
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL---ESLRKSI 535 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~---~~lr~~i 535 (617)
|+++|++++|++++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+. ..+|+++
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 5789999999755679999999999999999999999999999999999999999999999999987764 3478899
Q ss_pred EEEccCCCccc-ccHHHHHhcCCC--CCC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 007122 536 GVVPQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (617)
Q Consensus 536 ~~V~Qd~~LF~-gTIreNI~~g~~--~~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiAR 608 (617)
+||+|++.+|. .|++||+.++.. ..+ ++++.++++..++.+..+. ...+||||||||++|||
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lar 149 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRA-----------LPAELSGGEQQRVAIAR 149 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------ChhhcCHHHHHHHHHHH
Confidence 99999999997 599999987521 122 2345555666666554433 33589999999999999
Q ss_pred HHhCCCCCC
Q 007122 609 AFLKAPPIL 617 (617)
Q Consensus 609 All~~p~IL 617 (617)
|++++|++|
T Consensus 150 al~~~p~ll 158 (214)
T cd03292 150 AIVNSPTIL 158 (214)
T ss_pred HHHcCCCEE
Confidence 999999975
No 90
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.97 E-value=9.2e-31 Score=267.67 Aligned_cols=167 Identities=28% Similarity=0.495 Sum_probs=140.4
Q ss_pred HHHHHHhcccccccCCCCCCCCCCCCcceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC
Q 007122 431 KSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (617)
Q Consensus 431 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~ 510 (617)
+.+.+++..+++..+ ..+.+ ...+.|+++|+++. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++
T Consensus 15 ~~~~~~~~~~~~~~~-~~~~~--~~~~~l~i~nls~~---~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~ 88 (282)
T cd03291 15 EGFGELLEKAKQENN-DRKHS--SDDNNLFFSNLCLV---GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE 88 (282)
T ss_pred HHHHHHHhccccccc-ccccC--CCCCeEEEEEEEEe---cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345555655443221 11111 22357999999995 3579999999999999999999999999999999999999
Q ss_pred CCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCcccccc
Q 007122 511 THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG 590 (617)
Q Consensus 511 p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vg 590 (617)
|++|+|.+|| .++|++|++.+|++|++||+.++.. ..+.++.++++.+++.+.+..+|.+++|.++
T Consensus 89 p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~ 154 (282)
T cd03291 89 PSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLG 154 (282)
T ss_pred CCCcEEEECC-------------EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceec
Confidence 9999999998 4999999999999999999998642 3445566777888999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 591 ERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 591 e~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
+.+..||||||||++|||||+++|++|
T Consensus 155 ~~~~~LSgGq~qrv~lAraL~~~p~iL 181 (282)
T cd03291 155 EGGITLSGGQRARISLARAVYKDADLY 181 (282)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999999999975
No 91
>PRK10908 cell division protein FtsE; Provisional
Probab=99.97 E-value=2.9e-31 Score=263.45 Aligned_cols=148 Identities=35% Similarity=0.587 Sum_probs=123.0
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHH---Hhcce
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---LRKSI 535 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~---lr~~i 535 (617)
|+++|++++|++++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+++... +|+.+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 81 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence 789999999964568999999999999999999999999999999999999999999999999998876543 68899
Q ss_pred EEEccCCCc-ccccHHHHHhcCC--CCCCHH----HHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 007122 536 GVVPQDTVL-FNDTIFHNIRYGR--LSATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (617)
Q Consensus 536 ~~V~Qd~~L-F~gTIreNI~~g~--~~~~de----~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiAR 608 (617)
+||+|++.+ ++.|++||+.++. ...+++ ++.++++..++.+...+ ....||||||||++|||
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lar 150 (222)
T PRK10908 82 GMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKN-----------FPIQLSGGEQQRVGIAR 150 (222)
T ss_pred EEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------CchhCCHHHHHHHHHHH
Confidence 999999987 5779999998752 123333 34455555555544333 34689999999999999
Q ss_pred HHhCCCCCC
Q 007122 609 AFLKAPPIL 617 (617)
Q Consensus 609 All~~p~IL 617 (617)
|++++|++|
T Consensus 151 al~~~p~ll 159 (222)
T PRK10908 151 AVVNKPAVL 159 (222)
T ss_pred HHHcCCCEE
Confidence 999999975
No 92
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.4e-31 Score=263.99 Aligned_cols=145 Identities=35% Similarity=0.532 Sum_probs=119.8
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+. .+++++||
T Consensus 1 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYGS-VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeCC-eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEEE
Confidence 578999999964 679999999999999999999999999999999999999999999999999876543 56789999
Q ss_pred ccCCCccc-ccHHHHHhcCCCC--CC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh
Q 007122 539 PQDTVLFN-DTIFHNIRYGRLS--AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (617)
Q Consensus 539 ~Qd~~LF~-gTIreNI~~g~~~--~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll 611 (617)
||++.+|. .|++||+.++... .+ ++++.++++..++.++.. ....+||||||||++|||||+
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN-----------RYPHELSGGQQQRVALARALA 146 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHHHHHHHh
Confidence 99999885 6999999875321 12 223445555555544433 334689999999999999999
Q ss_pred CCCCCC
Q 007122 612 KAPPIL 617 (617)
Q Consensus 612 ~~p~IL 617 (617)
++|++|
T Consensus 147 ~~p~~l 152 (213)
T cd03259 147 REPSLL 152 (213)
T ss_pred cCCCEE
Confidence 999975
No 93
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.97 E-value=2e-31 Score=262.52 Aligned_cols=147 Identities=37% Similarity=0.587 Sum_probs=122.5
Q ss_pred EEEeEEEeecCC-cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 460 QFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 460 ~~~nvsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
+++|++++|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...++++++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 478999999742 5799999999999999999999999999999999999999999999999999888888889999999
Q ss_pred ccCC--CcccccHHHHHhcCCC--CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 007122 539 PQDT--VLFNDTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (617)
Q Consensus 539 ~Qd~--~LF~gTIreNI~~g~~--~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAl 610 (617)
||++ .+++.|++||+.++.. ..++ +++.+.++..++.++++ .....||||||||++|||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD-----------RSPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHHHHHHH
Confidence 9998 4678999999987521 1222 23444555555544433 34468999999999999999
Q ss_pred hCCCCCC
Q 007122 611 LKAPPIL 617 (617)
Q Consensus 611 l~~p~IL 617 (617)
+++|++|
T Consensus 150 ~~~p~ll 156 (211)
T cd03225 150 AMDPDIL 156 (211)
T ss_pred hcCCCEE
Confidence 9999975
No 94
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.8e-31 Score=266.96 Aligned_cols=148 Identities=36% Similarity=0.591 Sum_probs=122.5
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCC---HHHHhcce
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT---LESLRKSI 535 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~---~~~lr~~i 535 (617)
|+++||+++|++++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+++.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 578999999975367999999999999999999999999999999999999999999999999998877 45678899
Q ss_pred EEEccCCCccc-ccHHHHHhcCCCC--------------CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHH
Q 007122 536 GVVPQDTVLFN-DTIFHNIRYGRLS--------------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGE 600 (617)
Q Consensus 536 ~~V~Qd~~LF~-gTIreNI~~g~~~--------------~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQ 600 (617)
+||||++.+|. .|++||+.++... ..++++.++++..++ +.........|||||
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~ 149 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGL-----------LDKAYQRADQLSGGQ 149 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCC-----------hhhhCCCcccCCHHH
Confidence 99999999887 6999999875321 112233344444443 333445677899999
Q ss_pred HHHHHHHHHHhCCCCCC
Q 007122 601 KQRVALARAFLKAPPIL 617 (617)
Q Consensus 601 rQRlaiARAll~~p~IL 617 (617)
|||++||||++++|++|
T Consensus 150 ~qrv~la~al~~~p~ll 166 (241)
T cd03256 150 QQRVAIARALMQQPKLI 166 (241)
T ss_pred HHHHHHHHHHhcCCCEE
Confidence 99999999999999985
No 95
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.97 E-value=3e-31 Score=267.05 Aligned_cols=148 Identities=34% Similarity=0.559 Sum_probs=121.9
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCH---HHHhcce
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL---ESLRKSI 535 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~---~~lr~~i 535 (617)
|+++||+++|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++. ..+|+++
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI 81 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhhe
Confidence 7899999999745679999999999999999999999999999999999999999999999999987764 3468899
Q ss_pred EEEccCCCccc-ccHHHHHhcCCCCC--------------CHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHH
Q 007122 536 GVVPQDTVLFN-DTIFHNIRYGRLSA--------------TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGE 600 (617)
Q Consensus 536 ~~V~Qd~~LF~-gTIreNI~~g~~~~--------------~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQ 600 (617)
+||||++.+|. .|++||+.++.... .++++.++++..++. .........|||||
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~ 150 (243)
T TIGR02315 82 GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA-----------DKAYQRADQLSGGQ 150 (243)
T ss_pred EEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH-----------hhhcCCcccCCHHH
Confidence 99999999886 69999998753210 112333444444443 33445667899999
Q ss_pred HHHHHHHHHHhCCCCCC
Q 007122 601 KQRVALARAFLKAPPIL 617 (617)
Q Consensus 601 rQRlaiARAll~~p~IL 617 (617)
|||++|||||+++|++|
T Consensus 151 ~qrv~la~al~~~p~ll 167 (243)
T TIGR02315 151 QQRVAIARALAQQPDLI 167 (243)
T ss_pred HHHHHHHHHHhcCCCEE
Confidence 99999999999999985
No 96
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.97 E-value=3e-31 Score=262.59 Aligned_cols=147 Identities=29% Similarity=0.494 Sum_probs=122.1
Q ss_pred eEEEeEEEeecCC---cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 007122 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (617)
Q Consensus 459 I~~~nvsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i 535 (617)
|+++||+++|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 7899999999743 179999999999999999999999999999999999999999999999999875 456778899
Q ss_pred EEEccCCCcccc-cHHHHHhcCCC--CCC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 007122 536 GVVPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (617)
Q Consensus 536 ~~V~Qd~~LF~g-TIreNI~~g~~--~~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiAR 608 (617)
+|+||++.+|.. |++||+.+... ..+ ++++.++++..++.+ .......+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEE-----------LLDRRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-----------HHhhhhhhcCHHHHHHHHHHH
Confidence 999999999985 99999976421 122 233444555554443 344566789999999999999
Q ss_pred HHhCCCCCC
Q 007122 609 AFLKAPPIL 617 (617)
Q Consensus 609 All~~p~IL 617 (617)
|++.+|++|
T Consensus 150 al~~~p~il 158 (218)
T cd03266 150 ALVHDPPVL 158 (218)
T ss_pred HHhcCCCEE
Confidence 999999975
No 97
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.9e-31 Score=265.41 Aligned_cols=149 Identities=34% Similarity=0.500 Sum_probs=122.3
Q ss_pred ceEEEeEEEeecCC---cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHH---H
Q 007122 458 SIQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---L 531 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~---l 531 (617)
.|+++||+|+|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 48999999999742 57999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-cceEEEccCCCcccc-cHHHHHhcCCC--CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 532 R-KSIGVVPQDTVLFND-TIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 532 r-~~i~~V~Qd~~LF~g-TIreNI~~g~~--~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
| +.++||||++.+|.. |++||+.++.. ..+. +++.++++..++ +........+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGL-----------EHRANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------chhhhCChhhCCHHHHHH
Confidence 3 679999999999975 99999986311 1222 234444444444 333444567899999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
++||||++.+|++|
T Consensus 154 l~la~al~~~p~ll 167 (233)
T PRK11629 154 VAIARALVNNPRLV 167 (233)
T ss_pred HHHHHHHhcCCCEE
Confidence 99999999999985
No 98
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.4e-31 Score=262.59 Aligned_cols=149 Identities=34% Similarity=0.549 Sum_probs=132.8
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCC-CCCHHHHhcceE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC-EVTLESLRKSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~-~~~~~~lr~~i~ 536 (617)
.|+++|++|+|+++.++|+|+|++|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++. +.+...+|+++|
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG 82 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG 82 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceE
Confidence 5899999999987789999999999999999999999999999999999999999999999999998 588999999999
Q ss_pred EEccCC--CcccccHHHHHhcCCCC--CCHH----HHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 007122 537 VVPQDT--VLFNDTIFHNIRYGRLS--ATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (617)
Q Consensus 537 ~V~Qd~--~LF~gTIreNI~~g~~~--~~de----~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiAR 608 (617)
||+|+| ++|..||.|.+.||..+ .+.+ .+.++++.++++++-++ .-.+||||||||+|||-
T Consensus 83 ~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r-----------~p~~LSGGqkqRvaIA~ 151 (235)
T COG1122 83 LVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDR-----------PPFNLSGGQKQRVAIAG 151 (235)
T ss_pred EEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccC-----------CccccCCcceeeHHhhH
Confidence 999999 89999999999999542 3444 46667777777776443 34689999999999999
Q ss_pred HHhCCCCCC
Q 007122 609 AFLKAPPIL 617 (617)
Q Consensus 609 All~~p~IL 617 (617)
+|..+|++|
T Consensus 152 vLa~~P~il 160 (235)
T COG1122 152 VLAMGPEIL 160 (235)
T ss_pred HHHcCCCEE
Confidence 999999975
No 99
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.97 E-value=3.4e-31 Score=262.58 Aligned_cols=147 Identities=30% Similarity=0.464 Sum_probs=120.6
Q ss_pred eEEEeEEEeecCC-cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 459 IQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 459 I~~~nvsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
|+++||+++|+++ +++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++... ...++++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence 5799999999753 6899999999999999999999999999999999999999999999999998764 3667889999
Q ss_pred EccCCCcc-cccHHHHHhcCCC--CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 007122 538 VPQDTVLF-NDTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (617)
Q Consensus 538 V~Qd~~LF-~gTIreNI~~g~~--~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAl 610 (617)
|+|++.+| +.|++||+.++.. ..+. +++.++++..++.+.. + ....+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-------N----KRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-------h----ChhhhCCHHHHHHHHHHHHH
Confidence 99999999 6799999986421 1222 2344445554544332 2 33457999999999999999
Q ss_pred hCCCCCC
Q 007122 611 LKAPPIL 617 (617)
Q Consensus 611 l~~p~IL 617 (617)
+++|++|
T Consensus 149 ~~~p~ll 155 (220)
T cd03263 149 IGGPSVL 155 (220)
T ss_pred hcCCCEE
Confidence 9999975
No 100
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5.5e-31 Score=269.20 Aligned_cols=149 Identities=37% Similarity=0.594 Sum_probs=126.4
Q ss_pred ceEEEeEEEeecC-CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 007122 458 SIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~ 536 (617)
.|+++|++++|++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 6999999999973 568999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccCC--CcccccHHHHHhcCCC--CCCHHH----HHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 007122 537 VVPQDT--VLFNDTIFHNIRYGRL--SATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (617)
Q Consensus 537 ~V~Qd~--~LF~gTIreNI~~g~~--~~~de~----i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiAR 608 (617)
||||++ .+++.|++|||.++.. ..+.++ +.++++..++.+++.+ ...+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~lar 155 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDK-----------EPQNLSGGQKQRVAIAS 155 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------CcccCCHHHHHHHHHHH
Confidence 999998 4667899999987521 123332 4455555566555443 44699999999999999
Q ss_pred HHhCCCCCC
Q 007122 609 AFLKAPPIL 617 (617)
Q Consensus 609 All~~p~IL 617 (617)
||+++|++|
T Consensus 156 al~~~p~ll 164 (271)
T PRK13632 156 VLALNPEII 164 (271)
T ss_pred HHHcCCCEE
Confidence 999999985
No 101
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.97 E-value=5.1e-31 Score=261.53 Aligned_cols=148 Identities=34% Similarity=0.547 Sum_probs=120.4
Q ss_pred eEEEeEEEeecCC---cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHH---Hh
Q 007122 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---LR 532 (617)
Q Consensus 459 I~~~nvsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~---lr 532 (617)
|+++||+++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 7899999999742 47999999999999999999999999999999999999999999999999998887654 34
Q ss_pred -cceEEEccCCCccc-ccHHHHHhcCCC--CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 007122 533 -KSIGVVPQDTVLFN-DTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (617)
Q Consensus 533 -~~i~~V~Qd~~LF~-gTIreNI~~g~~--~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRl 604 (617)
+.++||+|++.+|. .|++||+.++.. ..+. +++.++++..++ +.........||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGL-----------EHRINHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hhhhhCChhhCCHHHHHHH
Confidence 68999999999995 699999986421 1221 223334444343 3334445578999999999
Q ss_pred HHHHHHhCCCCCC
Q 007122 605 ALARAFLKAPPIL 617 (617)
Q Consensus 605 aiARAll~~p~IL 617 (617)
+||||++++|++|
T Consensus 151 ~laral~~~p~il 163 (221)
T TIGR02211 151 AIARALVNQPSLV 163 (221)
T ss_pred HHHHHHhCCCCEE
Confidence 9999999999985
No 102
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4e-31 Score=278.09 Aligned_cols=146 Identities=29% Similarity=0.471 Sum_probs=125.0
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++ .+++++|
T Consensus 6 ~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~ 82 (351)
T PRK11432 6 FVVLKNITKRFG-SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDICM 82 (351)
T ss_pred EEEEEeEEEEEC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEE
Confidence 699999999996 4679999999999999999999999999999999999999999999999999987764 3578999
Q ss_pred EccCCCccc-ccHHHHHhcCCC--CCC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 007122 538 VPQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (617)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~~--~~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAl 610 (617)
|+|++.+|. .|++|||.|+.. ..+ ++++.++++..++.++.++. ...||||||||+||||||
T Consensus 83 vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~-----------~~~LSgGq~QRVaLARaL 151 (351)
T PRK11432 83 VFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY-----------VDQISGGQQQRVALARAL 151 (351)
T ss_pred EeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHHH
Confidence 999999996 599999998632 122 34556667777776554443 457999999999999999
Q ss_pred hCCCCCC
Q 007122 611 LKAPPIL 617 (617)
Q Consensus 611 l~~p~IL 617 (617)
+++|++|
T Consensus 152 ~~~P~lL 158 (351)
T PRK11432 152 ILKPKVL 158 (351)
T ss_pred HcCCCEE
Confidence 9999985
No 103
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5.6e-31 Score=269.96 Aligned_cols=149 Identities=34% Similarity=0.522 Sum_probs=129.5
Q ss_pred ceEEEeEEEeecC-CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 007122 458 SIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~ 536 (617)
.|+++||+++|++ .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+++.|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 5899999999974 457999999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEccCC--CcccccHHHHHhcCCC--CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 007122 537 VVPQDT--VLFNDTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (617)
Q Consensus 537 ~V~Qd~--~LF~gTIreNI~~g~~--~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiAR 608 (617)
||+|++ .+++.|++|||.++.. ..+. +++.++++..++.++++..| ..||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 5778899999987531 1222 34666777777777766655 489999999999999
Q ss_pred HHhCCCCCC
Q 007122 609 AFLKAPPIL 617 (617)
Q Consensus 609 All~~p~IL 617 (617)
||+.+|+||
T Consensus 154 al~~~p~ll 162 (279)
T PRK13635 154 VLALQPDII 162 (279)
T ss_pred HHHcCCCEE
Confidence 999999985
No 104
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.97 E-value=4.8e-31 Score=264.41 Aligned_cols=156 Identities=25% Similarity=0.398 Sum_probs=124.9
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHH-hcceEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIGV 537 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~l-r~~i~~ 537 (617)
|+++|++|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+ +.+++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFG-GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEEC-CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 57899999997 4579999999999999999999999999999999999999999999999999988887654 567999
Q ss_pred EccCCCcccc-cHHHHHhcCCCCCCHHHH-------HHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 007122 538 VPQDTVLFND-TIFHNIRYGRLSATEEEV-------YDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (617)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~~~~de~i-------~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARA 609 (617)
|||++.+|.+ |++|||.++........+ ........+++.++.+ |++.........||||||||++||||
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~a 157 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIARA 157 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHHHH
Confidence 9999999986 999999876421110000 0001111234455554 55555666778999999999999999
Q ss_pred HhCCCCCC
Q 007122 610 FLKAPPIL 617 (617)
Q Consensus 610 ll~~p~IL 617 (617)
++.+|++|
T Consensus 158 l~~~p~ll 165 (236)
T cd03219 158 LATDPKLL 165 (236)
T ss_pred HhcCCCEE
Confidence 99999975
No 105
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9.4e-31 Score=263.00 Aligned_cols=149 Identities=36% Similarity=0.567 Sum_probs=125.6
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++|++|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.++|
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSF-GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 589999999996 4579999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EccCCCcccccHHHHHhcCCC--CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCC
Q 007122 538 VPQDTVLFNDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (617)
Q Consensus 538 V~Qd~~LF~gTIreNI~~g~~--~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~ 615 (617)
+||++.+|+.|++||+.++.. +..++++.+.++..++.+ .........||||||||++||||++++|+
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrl~la~al~~~p~ 151 (241)
T PRK14250 82 VFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNK----------EYATRDVKNLSGGEAQRVSIARTLANNPE 151 (241)
T ss_pred EecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCH----------HHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999987632 112334444444444421 11234567899999999999999999999
Q ss_pred CC
Q 007122 616 IL 617 (617)
Q Consensus 616 IL 617 (617)
+|
T Consensus 152 ll 153 (241)
T PRK14250 152 VL 153 (241)
T ss_pred EE
Confidence 75
No 106
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=5.4e-31 Score=259.48 Aligned_cols=145 Identities=32% Similarity=0.542 Sum_probs=122.2
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|+++||+|+|++ .++++|+||+|++| +++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+ ..++++++||
T Consensus 1 i~~~~~~~~~~~-~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 77 (211)
T cd03264 1 LQLENLTKRYGK-KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGYL 77 (211)
T ss_pred CEEEEEEEEECC-EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEEe
Confidence 579999999964 57999999999999 99999999999999999999999999999999999998776 6788999999
Q ss_pred ccCCCcccc-cHHHHHhcCCC--CCC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh
Q 007122 539 PQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (617)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~--~~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll 611 (617)
+|++.+|.+ |++||+.+... ..+ ++++.++++..++.++.+ + ....||||||||++||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~LS~G~~qrv~la~al~ 146 (211)
T cd03264 78 PQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-------K----KIGSLSGGMRRRVGIAQALV 146 (211)
T ss_pred cCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-------C----chhhCCHHHHHHHHHHHHHh
Confidence 999999986 99999976311 112 234566666666655432 2 33579999999999999999
Q ss_pred CCCCCC
Q 007122 612 KAPPIL 617 (617)
Q Consensus 612 ~~p~IL 617 (617)
++|++|
T Consensus 147 ~~p~ll 152 (211)
T cd03264 147 GDPSIL 152 (211)
T ss_pred cCCCEE
Confidence 999975
No 107
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.97 E-value=6.4e-31 Score=258.36 Aligned_cols=145 Identities=23% Similarity=0.406 Sum_probs=125.1
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|+++|++++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+. ..++++++||
T Consensus 1 l~~~~l~~~~~-~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYG-KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEEC-CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEEe
Confidence 57899999996 46899999999999999999999999999999999999999999999999988764 5678899999
Q ss_pred ccCCCcc-cccHHHHHhcCC--CCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCC
Q 007122 539 PQDTVLF-NDTIFHNIRYGR--LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (617)
Q Consensus 539 ~Qd~~LF-~gTIreNI~~g~--~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~ 615 (617)
||++.+| +.|++||+.++. ...+++++.++++..++.+...+ ....||||||||++||||++.+|+
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK-----------KVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhh-----------hHhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999888 579999997652 12346677778888877665443 346799999999999999999999
Q ss_pred CC
Q 007122 616 IL 617 (617)
Q Consensus 616 IL 617 (617)
+|
T Consensus 147 ll 148 (208)
T cd03268 147 LL 148 (208)
T ss_pred EE
Confidence 75
No 108
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.6e-31 Score=266.17 Aligned_cols=152 Identities=35% Similarity=0.549 Sum_probs=126.2
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC-----CCCCeEEECCEeCCC--CCHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLES 530 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~-----p~~G~I~idG~~i~~--~~~~~ 530 (617)
.|+++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.+ .+...
T Consensus 6 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 84 (253)
T PRK14242 6 KMEARGLSFFYG-DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVE 84 (253)
T ss_pred EEEEeeeEEEEC-CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHH
Confidence 699999999996 3579999999999999999999999999999999999975 689999999999865 34567
Q ss_pred HhcceEEEccCCCcccccHHHHHhcCCC--CC-----CHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA-----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 531 lr~~i~~V~Qd~~LF~gTIreNI~~g~~--~~-----~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
+|++++||+|++.+|+.|++||+.++.. .. .++++.++++.+++.+++. +.......+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~qr 157 (253)
T PRK14242 85 LRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQQQR 157 (253)
T ss_pred HhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHHHHH
Confidence 8889999999999999999999987521 11 1344556666666654432 23456678999999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
++||||++.+|++|
T Consensus 158 v~laral~~~p~ll 171 (253)
T PRK14242 158 LCIARALAVEPEVL 171 (253)
T ss_pred HHHHHHHhcCCCEE
Confidence 99999999999975
No 109
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.97 E-value=5.7e-31 Score=259.68 Aligned_cols=151 Identities=32% Similarity=0.513 Sum_probs=120.3
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCC--CCHHHHhcceE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE--VTLESLRKSIG 536 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~--~~~~~lr~~i~ 536 (617)
|+++||+++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.. .+...++++++
T Consensus 1 l~~~~l~~~~~~-~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFGD-FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEECC-eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 578999999964 579999999999999999999999999999999999999999999999999853 45567788999
Q ss_pred EEccCCCccc-ccHHHHHhcCCC---CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhC
Q 007122 537 VVPQDTVLFN-DTIFHNIRYGRL---SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612 (617)
Q Consensus 537 ~V~Qd~~LF~-gTIreNI~~g~~---~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~ 612 (617)
||||++.+|. .|++||+.++.. ..+.++..+. +.+.++.+ |++..+.....+||||||||++||||+++
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~ 152 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEER-----ALELLEKV--GLADKADAYPAQLSGGQQQRVAIARALAM 152 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHH-----HHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHHhc
Confidence 9999999996 699999987531 2222221111 12223332 33333444557899999999999999999
Q ss_pred CCCCC
Q 007122 613 APPIL 617 (617)
Q Consensus 613 ~p~IL 617 (617)
+|++|
T Consensus 153 ~p~ll 157 (213)
T cd03262 153 NPKVM 157 (213)
T ss_pred CCCEE
Confidence 99975
No 110
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.97 E-value=6.9e-31 Score=260.77 Aligned_cols=152 Identities=33% Similarity=0.554 Sum_probs=120.8
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHH-hcceEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIGV 537 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~l-r~~i~~ 537 (617)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+.... +++++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYGK-SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecCC-eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 579999999964 579999999999999999999999999999999999999999999999999988877654 678999
Q ss_pred EccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCC
Q 007122 538 VPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPI 616 (617)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~I 616 (617)
|||++.+|.+ |++||+.++......++..+. +.+.++.++ +++.........||||||||++||||++++|++
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 153 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRPKL 153 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcCchhHHHH-----HHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999986 999999886432211111111 112222221 123334456678999999999999999999997
Q ss_pred C
Q 007122 617 L 617 (617)
Q Consensus 617 L 617 (617)
|
T Consensus 154 l 154 (222)
T cd03224 154 L 154 (222)
T ss_pred E
Confidence 5
No 111
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.97 E-value=6.4e-31 Score=259.33 Aligned_cols=145 Identities=30% Similarity=0.530 Sum_probs=119.7
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.. +++++||
T Consensus 1 i~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN-VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC-eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEEE
Confidence 579999999974 5799999999999999999999999999999999999999999999999998766543 4689999
Q ss_pred ccCCCccc-ccHHHHHhcCCC--CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh
Q 007122 539 PQDTVLFN-DTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (617)
Q Consensus 539 ~Qd~~LF~-gTIreNI~~g~~--~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll 611 (617)
||++.+|. .|++||+.++.. .... +++.++++..++.++.. .....||||||||++||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr~~laral~ 146 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLD-----------RKPKQLSGGQRQRVALGRAIV 146 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHh-----------CChhhCCHHHHHHHHHHHHHh
Confidence 99999985 699999987521 1222 23444555555554433 334689999999999999999
Q ss_pred CCCCCC
Q 007122 612 KAPPIL 617 (617)
Q Consensus 612 ~~p~IL 617 (617)
++|++|
T Consensus 147 ~~p~ll 152 (213)
T cd03301 147 REPKVF 152 (213)
T ss_pred cCCCEE
Confidence 999975
No 112
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.2e-30 Score=266.68 Aligned_cols=150 Identities=37% Similarity=0.592 Sum_probs=123.7
Q ss_pred eEEEeEEEeecCC----cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCC--HHHHh
Q 007122 459 IQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT--LESLR 532 (617)
Q Consensus 459 I~~~nvsF~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~--~~~lr 532 (617)
|+++||+|+|++. +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 8999999999742 47999999999999999999999999999999999999999999999999998754 45778
Q ss_pred cceEEEccCC--CcccccHHHHHhcCCC--CCCHHH----HHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 007122 533 KSIGVVPQDT--VLFNDTIFHNIRYGRL--SATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (617)
Q Consensus 533 ~~i~~V~Qd~--~LF~gTIreNI~~g~~--~~~de~----i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRl 604 (617)
++++||||+| .+|+.|++|||.++.. ..+.++ +.++++.+++. +.+........||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 8999999998 6889999999987631 234433 33444444442 11234455678999999999
Q ss_pred HHHHHHhCCCCCC
Q 007122 605 ALARAFLKAPPIL 617 (617)
Q Consensus 605 aiARAll~~p~IL 617 (617)
+|||||+.+|++|
T Consensus 154 ~iAraL~~~P~ll 166 (287)
T PRK13637 154 AIAGVVAMEPKIL 166 (287)
T ss_pred HHHHHHHcCCCEE
Confidence 9999999999975
No 113
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.1e-30 Score=268.50 Aligned_cols=149 Identities=30% Similarity=0.526 Sum_probs=125.2
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCC--CCCHHHHhcce
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC--EVTLESLRKSI 535 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~--~~~~~~lr~~i 535 (617)
.|+++||+|+|++++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++. ..+...+|+.+
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~i 84 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESV 84 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhE
Confidence 5999999999975568999999999999999999999999999999999999999999999999984 34566788999
Q ss_pred EEEccCC--CcccccHHHHHhcCCC--CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 007122 536 GVVPQDT--VLFNDTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALA 607 (617)
Q Consensus 536 ~~V~Qd~--~LF~gTIreNI~~g~~--~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiA 607 (617)
+||||++ .+|+.|++||+.++.. ..+. +.+.++++..++.++ ......+||||||||++||
T Consensus 85 g~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LS~G~~qrl~la 153 (283)
T PRK13636 85 GMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHL-----------KDKPTHCLSFGQKKRVAIA 153 (283)
T ss_pred EEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhCCcccCCHHHHHHHHHH
Confidence 9999998 6789999999987531 2232 234455555555443 3345779999999999999
Q ss_pred HHHhCCCCCC
Q 007122 608 RAFLKAPPIL 617 (617)
Q Consensus 608 RAll~~p~IL 617 (617)
|||+.+|+||
T Consensus 154 raL~~~p~lL 163 (283)
T PRK13636 154 GVLVMEPKVL 163 (283)
T ss_pred HHHHcCCCEE
Confidence 9999999975
No 114
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=9.3e-31 Score=261.81 Aligned_cols=148 Identities=33% Similarity=0.498 Sum_probs=122.2
Q ss_pred eEEEeEEEeecCC---cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHH---Hh
Q 007122 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---LR 532 (617)
Q Consensus 459 I~~~nvsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~---lr 532 (617)
|+++|++++|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+... ++
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 7899999999743 28999999999999999999999999999999999999999999999999998876543 47
Q ss_pred cceEEEccCCCccc-ccHHHHHhcCCC--CCC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 007122 533 KSIGVVPQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605 (617)
Q Consensus 533 ~~i~~V~Qd~~LF~-gTIreNI~~g~~--~~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRla 605 (617)
++++|+||++.+|. .|++||+.++.. ..+ ++++.++++..++.+.. .....+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKA-----------DAYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hcChhhCCHHHHHHHH
Confidence 88999999999997 699999986421 122 23344455555554433 3345689999999999
Q ss_pred HHHHHhCCCCCC
Q 007122 606 LARAFLKAPPIL 617 (617)
Q Consensus 606 iARAll~~p~IL 617 (617)
||||++++|++|
T Consensus 151 la~al~~~p~ll 162 (233)
T cd03258 151 IARALANNPKVL 162 (233)
T ss_pred HHHHHhcCCCEE
Confidence 999999999975
No 115
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=5.4e-31 Score=261.16 Aligned_cols=143 Identities=31% Similarity=0.433 Sum_probs=119.5
Q ss_pred eEEEeEEEeecCC---cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 007122 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (617)
Q Consensus 459 I~~~nvsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i 535 (617)
|+++|++++|++. +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. +++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 5789999999742 589999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEEccCCCccc-ccHHHHHhcCCC--CCC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 007122 536 GVVPQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (617)
Q Consensus 536 ~~V~Qd~~LF~-gTIreNI~~g~~--~~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiAR 608 (617)
+||||++.+|. .|++||+.++.. ..+ ++++.++++..++.+...+. ...||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAY-----------PHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------cccCCHHHHHHHHHHH
Confidence 99999999997 699999986521 111 23455566666665544443 3579999999999999
Q ss_pred HHhCCCCCC
Q 007122 609 AFLKAPPIL 617 (617)
Q Consensus 609 All~~p~IL 617 (617)
||+++|++|
T Consensus 145 al~~~p~ll 153 (220)
T cd03293 145 ALAVDPDVL 153 (220)
T ss_pred HHHcCCCEE
Confidence 999999975
No 116
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=8.5e-31 Score=263.08 Aligned_cols=146 Identities=36% Similarity=0.531 Sum_probs=119.7
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+. .+++++|
T Consensus 2 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 78 (239)
T cd03296 2 SIEVRNVSKRFGD-FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGF 78 (239)
T ss_pred EEEEEeEEEEECC-EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEE
Confidence 3789999999974 679999999999999999999999999999999999999999999999999876553 3578999
Q ss_pred EccCCCccc-ccHHHHHhcCCCC--C----CH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 007122 538 VPQDTVLFN-DTIFHNIRYGRLS--A----TE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606 (617)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~~~--~----~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlai 606 (617)
|+|++.+|. .|++||+.++... . +. +++.++++..++.+. ......+||||||||++|
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~l 147 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWL-----------ADRYPAQLSGGQRQRVAL 147 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhh-----------hhcChhhCCHHHHHHHHH
Confidence 999999995 6999999876321 1 11 223344444444333 334456899999999999
Q ss_pred HHHHhCCCCCC
Q 007122 607 ARAFLKAPPIL 617 (617)
Q Consensus 607 ARAll~~p~IL 617 (617)
||||+++|++|
T Consensus 148 a~al~~~p~ll 158 (239)
T cd03296 148 ARALAVEPKVL 158 (239)
T ss_pred HHHHhcCCCEE
Confidence 99999999975
No 117
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.8e-30 Score=267.25 Aligned_cols=153 Identities=29% Similarity=0.513 Sum_probs=125.3
Q ss_pred ceEEEeEEEeecCC----cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCC----CHH
Q 007122 458 SIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV----TLE 529 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~----~~~ 529 (617)
.|+++||+|+|+++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 38999999999742 4799999999999999999999999999999999999999999999999999754 345
Q ss_pred HHhcceEEEccCC--CcccccHHHHHhcCCC--CCCHHHHHHHHHHHcHHHHHHhCCCCcccc-ccCCCCCCChHHHHHH
Q 007122 530 SLRKSIGVVPQDT--VLFNDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTV-VGERGLKLSGGEKQRV 604 (617)
Q Consensus 530 ~lr~~i~~V~Qd~--~LF~gTIreNI~~g~~--~~~de~i~~a~~~a~l~~~I~~lp~GldT~-vge~G~~LSGGQrQRl 604 (617)
.+|++|+||||+| .+|..|+.|||.++.. ..+.++..+. +.+.++.+ |+++. ......+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHH
Confidence 7889999999997 6899999999998632 2343333222 22334443 56543 4466789999999999
Q ss_pred HHHHHHhCCCCCC
Q 007122 605 ALARAFLKAPPIL 617 (617)
Q Consensus 605 aiARAll~~p~IL 617 (617)
+|||||+.+|+||
T Consensus 155 ~laraL~~~p~il 167 (286)
T PRK13646 155 AIVSILAMNPDII 167 (286)
T ss_pred HHHHHHHhCCCEE
Confidence 9999999999985
No 118
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.2e-30 Score=267.47 Aligned_cols=149 Identities=30% Similarity=0.527 Sum_probs=127.6
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
-|+++||+++|+++.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...++++++|
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 48899999999755679999999999999999999999999999999999999999999999999988788888999999
Q ss_pred EccCC--CcccccHHHHHhcCCC--CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 007122 538 VPQDT--VLFNDTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (617)
Q Consensus 538 V~Qd~--~LF~gTIreNI~~g~~--~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARA 609 (617)
|+|++ .+|+.|++||+.++.. ..+. +.+.++++..++.+++.+. ...||||||||++||||
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Gq~qrl~lara 151 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRV-----------PHHLSGGEKKRVAIAGV 151 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCC-----------cccCCHHHHHHHHHHHH
Confidence 99998 4788999999986531 2232 3356666666766655443 35899999999999999
Q ss_pred HhCCCCCC
Q 007122 610 FLKAPPIL 617 (617)
Q Consensus 610 ll~~p~IL 617 (617)
|+.+|++|
T Consensus 152 L~~~p~ll 159 (277)
T PRK13652 152 IAMEPQVL 159 (277)
T ss_pred HHcCCCEE
Confidence 99999975
No 119
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=8e-31 Score=276.07 Aligned_cols=148 Identities=31% Similarity=0.504 Sum_probs=122.5
Q ss_pred eEEEeEEEeec--C-CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHH---Hh
Q 007122 459 IQFDNVHFSYL--T-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---LR 532 (617)
Q Consensus 459 I~~~nvsF~Y~--~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~---lr 532 (617)
|+++||+|+|+ . +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997 2 358999999999999999999999999999999999999999999999999999887654 47
Q ss_pred cceEEEccCCCccc-ccHHHHHhcCCC--CCCHH----HHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 007122 533 KSIGVVPQDTVLFN-DTIFHNIRYGRL--SATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605 (617)
Q Consensus 533 ~~i~~V~Qd~~LF~-gTIreNI~~g~~--~~~de----~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRla 605 (617)
++|+||||++.+|. .|++||+.++.. ..+++ ++.+.++..++.++ ......+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDK-----------ADRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHHH
Confidence 89999999999986 799999987521 22322 33444444444333 33345689999999999
Q ss_pred HHHHHhCCCCCC
Q 007122 606 LARAFLKAPPIL 617 (617)
Q Consensus 606 iARAll~~p~IL 617 (617)
|||||+++|+||
T Consensus 151 lAraL~~~p~iL 162 (343)
T PRK11153 151 IARALASNPKVL 162 (343)
T ss_pred HHHHHHcCCCEE
Confidence 999999999985
No 120
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.97 E-value=1.6e-30 Score=254.01 Aligned_cols=146 Identities=25% Similarity=0.417 Sum_probs=126.1
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|+++||++.|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+ ..++++++|+
T Consensus 1 l~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 78 (201)
T cd03231 1 LEADELTCERDG-RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLYL 78 (201)
T ss_pred CEEEEEEEEeCC-ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEEe
Confidence 578999999963 57999999999999999999999999999999999999999999999999987653 4678899999
Q ss_pred ccCCCcc-cccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 539 PQDTVLF-NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 539 ~Qd~~LF-~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
+|++.++ +.|++||+.+..+...++++.++++..++.++... ...+||||||||++||||++++|++|
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~ll 147 (201)
T cd03231 79 GHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDR-----------PVAQLSAGQQRRVALARLLLSGRPLW 147 (201)
T ss_pred ccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcC-----------chhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999886 68999999887544456777788888887654322 24579999999999999999999975
No 121
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.97 E-value=1.4e-30 Score=258.94 Aligned_cols=149 Identities=32% Similarity=0.512 Sum_probs=124.8
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++||++.|+ ++++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...++++++|
T Consensus 7 ~i~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 85 (225)
T PRK10247 7 LLQLQNVGYLAG-DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSY 85 (225)
T ss_pred eEEEeccEEeeC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEE
Confidence 599999999996 4579999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EccCCCcccccHHHHHhcCC---CC-CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCC
Q 007122 538 VPQDTVLFNDTIFHNIRYGR---LS-ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (617)
Q Consensus 538 V~Qd~~LF~gTIreNI~~g~---~~-~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~ 613 (617)
|+|++.+|+.|++||+.++. .. ..++++.+.++..++. ++........||||||||++|||||+++
T Consensus 86 ~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (225)
T PRK10247 86 CAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALP----------DTILTKNIAELSGGEKQRISLIRNLQFM 155 (225)
T ss_pred EecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCC----------hHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999998641 11 1122233333333331 2344566788999999999999999999
Q ss_pred CCCC
Q 007122 614 PPIL 617 (617)
Q Consensus 614 p~IL 617 (617)
|++|
T Consensus 156 p~ll 159 (225)
T PRK10247 156 PKVL 159 (225)
T ss_pred CCEE
Confidence 9975
No 122
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.97 E-value=8.6e-31 Score=276.02 Aligned_cols=146 Identities=32% Similarity=0.466 Sum_probs=122.8
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+||.++.+.++. ++.++|
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig~ 80 (353)
T TIGR03265 4 YLSIDNIRKRFGA-FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYGI 80 (353)
T ss_pred EEEEEEEEEEeCC-eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 5899999999974 5799999999999999999999999999999999999999999999999999887654 578999
Q ss_pred EccCCCccc-ccHHHHHhcCCC--CCC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 007122 538 VPQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (617)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~~--~~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAl 610 (617)
|+|++.+|. .|++|||.|+.. ..+ ++++.++++..++.++ .......||||||||+||||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~-----------~~~~~~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGS-----------ERKYPGQLSGGQQQRVALARAL 149 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCch-----------hhCChhhCCHHHHHHHHHHHHH
Confidence 999999995 799999998732 122 2334445555444443 3445578999999999999999
Q ss_pred hCCCCCC
Q 007122 611 LKAPPIL 617 (617)
Q Consensus 611 l~~p~IL 617 (617)
+++|++|
T Consensus 150 ~~~P~ll 156 (353)
T TIGR03265 150 ATSPGLL 156 (353)
T ss_pred hcCCCEE
Confidence 9999975
No 123
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.5e-30 Score=264.45 Aligned_cols=153 Identities=31% Similarity=0.526 Sum_probs=127.4
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC-----CCCCeEEECCEeCCC--CCHH
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLE 529 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~-----p~~G~I~idG~~i~~--~~~~ 529 (617)
+.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.+ .+..
T Consensus 12 ~~l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~ 90 (260)
T PRK10744 12 SKIQVRNLNFYYGK-FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIA 90 (260)
T ss_pred ceEEEEEEEEEeCC-eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchH
Confidence 47999999999974 579999999999999999999999999999999999986 589999999999863 4566
Q ss_pred HHhcceEEEccCCCcccccHHHHHhcCCC---CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 007122 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRL---SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQ 602 (617)
Q Consensus 530 ~lr~~i~~V~Qd~~LF~gTIreNI~~g~~---~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQ 602 (617)
.+|++++||+|++.+|+.|++||+.++.. ..+. +++.++++.+++.+.+ +..+.+...+|||||||
T Consensus 91 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 91 LLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV-------KDKLHQSGYSLSGGQQQ 163 (260)
T ss_pred HHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh-------HHHHhcCCCCCCHHHHH
Confidence 78899999999999999999999987532 1222 3455566666654332 23455677899999999
Q ss_pred HHHHHHHHhCCCCCC
Q 007122 603 RVALARAFLKAPPIL 617 (617)
Q Consensus 603 RlaiARAll~~p~IL 617 (617)
|++||||++++|++|
T Consensus 164 rv~laral~~~p~ll 178 (260)
T PRK10744 164 RLCIARGIAIRPEVL 178 (260)
T ss_pred HHHHHHHHHCCCCEE
Confidence 999999999999985
No 124
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=7.6e-31 Score=263.95 Aligned_cols=152 Identities=33% Similarity=0.505 Sum_probs=123.3
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
++++||+++|++.+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+++.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 57899999997536799999999999999999999999999999999999999999999999999988888888999999
Q ss_pred ccCCCccc-ccHHHHHhcCCC--CCCHHHHHHHHHHHcHHHHHHhCCCCccc--cccCCCCCCChHHHHHHHHHHHHhCC
Q 007122 539 PQDTVLFN-DTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYST--VVGERGLKLSGGEKQRVALARAFLKA 613 (617)
Q Consensus 539 ~Qd~~LF~-gTIreNI~~g~~--~~~de~i~~a~~~a~l~~~I~~lp~GldT--~vge~G~~LSGGQrQRlaiARAll~~ 613 (617)
||++.+|. .|++||+.++.. ..+.++. ...+.+.++.+ |++. .......+||||||||++||||++++
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~~~ 153 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKI-----RERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALAAD 153 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHhcC
Confidence 99999995 699999987521 1121111 11222333333 2332 34556688999999999999999999
Q ss_pred CCCC
Q 007122 614 PPIL 617 (617)
Q Consensus 614 p~IL 617 (617)
|++|
T Consensus 154 p~ll 157 (242)
T cd03295 154 PPLL 157 (242)
T ss_pred CCEE
Confidence 9975
No 125
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.97 E-value=1.2e-30 Score=260.16 Aligned_cols=149 Identities=33% Similarity=0.485 Sum_probs=124.4
Q ss_pred ceEEEeEEEeecCC---cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHH---H
Q 007122 458 SIQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---L 531 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~---l 531 (617)
.|+++|++++|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 58999999999753 36999999999999999999999999999999999999999999999999998887654 2
Q ss_pred -hcceEEEccCCCcccc-cHHHHHhcCC--CCCC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 532 -RKSIGVVPQDTVLFND-TIFHNIRYGR--LSAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 532 -r~~i~~V~Qd~~LF~g-TIreNI~~g~--~~~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
+++++|++|++.+|.. |+.||+.++. ...+ ++++.++++..++.+++...| ..||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3689999999999875 9999997631 1111 344566666667665554433 4799999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
++|||||+.+|++|
T Consensus 155 l~la~al~~~p~ll 168 (228)
T PRK10584 155 VALARAFNGRPDVL 168 (228)
T ss_pred HHHHHHHhcCCCEE
Confidence 99999999999975
No 126
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.97 E-value=5.6e-31 Score=259.76 Aligned_cols=141 Identities=35% Similarity=0.547 Sum_probs=117.9
Q ss_pred EEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc
Q 007122 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP 539 (617)
Q Consensus 460 ~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~ 539 (617)
+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++. .+|++++|||
T Consensus 1 ~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v~ 74 (213)
T cd03235 1 EVEDLTVSYGG-HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYVP 74 (213)
T ss_pred CcccceeEECC-EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEec
Confidence 46899999964 57999999999999999999999999999999999999999999999998764 4678899999
Q ss_pred cCCCc---ccccHHHHHhcCCCC----------CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 007122 540 QDTVL---FNDTIFHNIRYGRLS----------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606 (617)
Q Consensus 540 Qd~~L---F~gTIreNI~~g~~~----------~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlai 606 (617)
|++.+ |+.|++||+.++... ..++++.++++..++.++..+ ...+||||||||++|
T Consensus 75 q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~l 143 (213)
T cd03235 75 QRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----------QIGELSGGQQQRVLL 143 (213)
T ss_pred cccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHHHH
Confidence 99986 668999999875321 112345666666666654433 345799999999999
Q ss_pred HHHHhCCCCCC
Q 007122 607 ARAFLKAPPIL 617 (617)
Q Consensus 607 ARAll~~p~IL 617 (617)
||||+++|++|
T Consensus 144 a~al~~~p~ll 154 (213)
T cd03235 144 ARALVQDPDLL 154 (213)
T ss_pred HHHHHcCCCEE
Confidence 99999999985
No 127
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.4e-30 Score=268.18 Aligned_cols=149 Identities=27% Similarity=0.497 Sum_probs=122.1
Q ss_pred eEEEeEEEeecCC----cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCC----CCHHH
Q 007122 459 IQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE----VTLES 530 (617)
Q Consensus 459 I~~~nvsF~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~----~~~~~ 530 (617)
|+++||+|+|+++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 7899999999743 369999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcceEEEccCC--CcccccHHHHHhcCCC--CCCHHH----HHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 007122 531 LRKSIGVVPQDT--VLFNDTIFHNIRYGRL--SATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQ 602 (617)
Q Consensus 531 lr~~i~~V~Qd~--~LF~gTIreNI~~g~~--~~~de~----i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQ 602 (617)
+|++++||+|+| .+|..|+.|||.++.. ..+.++ +.++++..++.+ ........+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~----------~~~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLAD----------EFWEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhccCCcccCCHHHHH
Confidence 889999999998 7999999999988742 123333 333344444421 1223456789999999
Q ss_pred HHHHHHHHhCCCCCC
Q 007122 603 RVALARAFLKAPPIL 617 (617)
Q Consensus 603 RlaiARAll~~p~IL 617 (617)
|++|||||+.+|++|
T Consensus 152 rvaiA~aL~~~p~il 166 (288)
T PRK13643 152 RVAIAGILAMEPEVL 166 (288)
T ss_pred HHHHHHHHHhCCCEE
Confidence 999999999999985
No 128
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.5e-30 Score=265.42 Aligned_cols=154 Identities=34% Similarity=0.539 Sum_probs=127.7
Q ss_pred CcceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC-----CCCeEEECCEeCCC--CCH
Q 007122 456 GGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICE--VTL 528 (617)
Q Consensus 456 ~~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p-----~~G~I~idG~~i~~--~~~ 528 (617)
.+.|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.+ .+.
T Consensus 17 ~~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 17 EIKMRARDVSVFYG-EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred CceEEEEeEEEEEC-CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 34799999999996 46799999999999999999999999999999999999975 89999999999875 345
Q ss_pred HHHhcceEEEccCCCcccccHHHHHhcCCC--CC--C----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHH
Q 007122 529 ESLRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA--T----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGE 600 (617)
Q Consensus 529 ~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~--~~--~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQ 600 (617)
..+|+.++||+|++.+|+.|++||+.++.. .. + ++++.++++..++.+++. +........|||||
T Consensus 96 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 168 (267)
T PRK14235 96 VELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSGGQ 168 (267)
T ss_pred HHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHH
Confidence 678889999999999999999999987521 11 1 234556666666654332 23455678899999
Q ss_pred HHHHHHHHHHhCCCCCC
Q 007122 601 KQRVALARAFLKAPPIL 617 (617)
Q Consensus 601 rQRlaiARAll~~p~IL 617 (617)
|||++|||||+.+|++|
T Consensus 169 ~qrv~laral~~~p~ll 185 (267)
T PRK14235 169 QQRLCIARAIAVSPEVI 185 (267)
T ss_pred HHHHHHHHHHHcCCCEE
Confidence 99999999999999985
No 129
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.5e-30 Score=265.13 Aligned_cols=148 Identities=28% Similarity=0.418 Sum_probs=127.4
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+++.++|
T Consensus 11 ~l~i~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 89 (265)
T PRK10575 11 TFALRNVSFRVP-GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAY 89 (265)
T ss_pred eEEEeeEEEEEC-CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEE
Confidence 699999999996 4589999999999999999999999999999999999999999999999999988888889999999
Q ss_pred EccCCCcccc-cHHHHHhcCCC----------CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 007122 538 VPQDTVLFND-TIFHNIRYGRL----------SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606 (617)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~----------~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlai 606 (617)
|+|++.++.+ |+.||+.++.. ...++++.++++.+++.+++...| .+||||||||++|
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~l 158 (265)
T PRK10575 90 LPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRAWI 158 (265)
T ss_pred eccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHHHH
Confidence 9999877654 99999987531 112345667777777766554433 4799999999999
Q ss_pred HHHHhCCCCCC
Q 007122 607 ARAFLKAPPIL 617 (617)
Q Consensus 607 ARAll~~p~IL 617 (617)
|||++.+|++|
T Consensus 159 aral~~~p~ll 169 (265)
T PRK10575 159 AMLVAQDSRCL 169 (265)
T ss_pred HHHHhcCCCEE
Confidence 99999999985
No 130
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.3e-30 Score=250.35 Aligned_cols=149 Identities=30% Similarity=0.453 Sum_probs=120.6
Q ss_pred ceEEEeEEEeecCCc---ccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCC-HHHHhc
Q 007122 458 SIQFDNVHFSYLTER---KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT-LESLRK 533 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~---~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~-~~~lr~ 533 (617)
.++++|+++.|+... ++|+|+||+|.+||+++|||+||||||||+++|+|+.+|++|+|.+||.++.... .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 589999999998554 7999999999999999999999999999999999999999999999997776543 347788
Q ss_pred ceEEEccCCCc-c--cccHHHHH----hcCCCCCCHHHHHHHHHHHcHHHH-HHhCCCCccccccCCCCCCChHHHHHHH
Q 007122 534 SIGVVPQDTVL-F--NDTIFHNI----RYGRLSATEEEVYDAARRAAIHDT-IMNFPAKYSTVVGERGLKLSGGEKQRVA 605 (617)
Q Consensus 534 ~i~~V~Qd~~L-F--~gTIreNI----~~g~~~~~de~i~~a~~~a~l~~~-I~~lp~GldT~vge~G~~LSGGQrQRla 605 (617)
.+-+|+|||+- + .-|+++=| ..+.-+..+++++++++.+++.+- ..+. -..||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~-----------P~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRR-----------PHELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcC-----------chhcChhHHHHHH
Confidence 99999999971 1 22455444 221112345668889999988653 3343 4569999999999
Q ss_pred HHHHHhCCCCCC
Q 007122 606 LARAFLKAPPIL 617 (617)
Q Consensus 606 iARAll~~p~IL 617 (617)
|||||.-+|++|
T Consensus 152 IARAL~~~PklL 163 (252)
T COG1124 152 IARALIPEPKLL 163 (252)
T ss_pred HHHHhccCCCEE
Confidence 999999999975
No 131
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.97 E-value=2.1e-30 Score=262.19 Aligned_cols=143 Identities=33% Similarity=0.490 Sum_probs=122.5
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++. .++++++|
T Consensus 12 ~l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~~ 85 (257)
T PRK11247 12 PLLLNAVSKRYG-ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTRL 85 (257)
T ss_pred cEEEEEEEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceEE
Confidence 599999999996 457999999999999999999999999999999999999999999999998763 46788999
Q ss_pred EccCCCccc-ccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCC
Q 007122 538 VPQDTVLFN-DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPI 616 (617)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~I 616 (617)
|+|++.+|. .|++||+.++.....++++.++++..++.+.. .....+||||||||++|||||+++|++
T Consensus 86 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGqkqrl~laraL~~~p~l 154 (257)
T PRK11247 86 MFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRA-----------NEWPAALSGGQKQRVALARALIHRPGL 154 (257)
T ss_pred EecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999997 69999998764222345566677776665543 334578999999999999999999997
Q ss_pred C
Q 007122 617 L 617 (617)
Q Consensus 617 L 617 (617)
|
T Consensus 155 l 155 (257)
T PRK11247 155 L 155 (257)
T ss_pred E
Confidence 5
No 132
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.97 E-value=1.7e-30 Score=276.84 Aligned_cols=148 Identities=31% Similarity=0.531 Sum_probs=130.3
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+++...++++|+|
T Consensus 3 ~L~~~nls~~y~-~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 3 MIDVSDLSVEFG-DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred eEEEeeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 489999999997 4689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCc-ccccHHHHHhcCCCC----------CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 007122 538 VPQDTVL-FNDTIFHNIRYGRLS----------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606 (617)
Q Consensus 538 V~Qd~~L-F~gTIreNI~~g~~~----------~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlai 606 (617)
|+|++.+ |+.|++||+.++... .+++.+.++++..++.++.++ ....||||||||++|
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv~I 150 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRVLL 150 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHH
Confidence 9999987 688999999886421 123456777888787665533 346899999999999
Q ss_pred HHHHhCCCCCC
Q 007122 607 ARAFLKAPPIL 617 (617)
Q Consensus 607 ARAll~~p~IL 617 (617)
||||+++|++|
T Consensus 151 ArAL~~~P~iL 161 (402)
T PRK09536 151 ARALAQATPVL 161 (402)
T ss_pred HHHHHcCCCEE
Confidence 99999999985
No 133
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2e-30 Score=265.36 Aligned_cols=148 Identities=28% Similarity=0.448 Sum_probs=123.4
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCC-HHHHhcceEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT-LESLRKSIGV 537 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~-~~~lr~~i~~ 537 (617)
|+++|++++|++++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+ ...+++.++|
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGI 81 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEE
Confidence 789999999975567999999999999999999999999999999999999999999999999998775 4677889999
Q ss_pred EccCCC--cccccHHHHHhcCCCC--CCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 007122 538 VPQDTV--LFNDTIFHNIRYGRLS--ATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (617)
Q Consensus 538 V~Qd~~--LF~gTIreNI~~g~~~--~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARA 609 (617)
|||+|. +++.|++|||.++... .+. +++.++++..++.++ .......||||||||++||||
T Consensus 82 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~lara 150 (274)
T PRK13644 82 VFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKY-----------RHRSPKTLSGGQGQCVALAGI 150 (274)
T ss_pred EEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHH-----------hcCCcccCCHHHHHHHHHHHH
Confidence 999985 6788999999876321 222 234444454455443 334457899999999999999
Q ss_pred HhCCCCCC
Q 007122 610 FLKAPPIL 617 (617)
Q Consensus 610 ll~~p~IL 617 (617)
|+.+|++|
T Consensus 151 l~~~p~ll 158 (274)
T PRK13644 151 LTMEPECL 158 (274)
T ss_pred HHcCCCEE
Confidence 99999985
No 134
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.5e-30 Score=263.62 Aligned_cols=152 Identities=32% Similarity=0.521 Sum_probs=125.0
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC-----CCCeEEECCEeCCC--CCHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICE--VTLES 530 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p-----~~G~I~idG~~i~~--~~~~~ 530 (617)
.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.. .+...
T Consensus 7 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (254)
T PRK14273 7 IIETENLNLFYTD-FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILE 85 (254)
T ss_pred eEEEeeeEEEeCC-ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHH
Confidence 6999999999964 5799999999999999999999999999999999999997 49999999999853 34567
Q ss_pred HhcceEEEccCCCcccccHHHHHhcCCC--C-CC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--S-AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 531 lr~~i~~V~Qd~~LF~gTIreNI~~g~~--~-~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
+|++++||+|++.+|+.|++|||.++.. . .+ ++.+.++++.+++.+.+ ++.+++ ...+||||||||
T Consensus 86 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LSgG~~qr 158 (254)
T PRK14273 86 LRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNT----NALSLSGGQQQR 158 (254)
T ss_pred HhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhC----CcccCCHHHHHH
Confidence 7889999999999999999999987531 1 11 23455566666654332 223343 567899999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
++|||||+++|++|
T Consensus 159 v~laral~~~p~ll 172 (254)
T PRK14273 159 LCIARTLAIEPNVI 172 (254)
T ss_pred HHHHHHHHcCCCEE
Confidence 99999999999975
No 135
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.97 E-value=1e-30 Score=275.23 Aligned_cols=136 Identities=35% Similarity=0.491 Sum_probs=117.6
Q ss_pred CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHH----hcceEEEccCCCccc
Q 007122 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL----RKSIGVVPQDTVLFN 546 (617)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~l----r~~i~~V~Qd~~LF~ 546 (617)
++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+..++ |++++||+|++.+|+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 5679999999999999999999999999999999999999999999999999999998887 789999999999997
Q ss_pred -ccHHHHHhcCCCC--CC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 547 -DTIFHNIRYGRLS--AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 547 -gTIreNI~~g~~~--~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
.|++|||.++.+. .+ ++++.++++.++++++..+ ...+||||||||++|||||+++|+||
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~-----------~p~~LSGGq~QRV~lARAL~~~p~iL 151 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHR-----------YPDELSGGMQQRVGLARALAAEPDIL 151 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhC-----------ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 5999999876321 22 3445666776666655444 44589999999999999999999985
No 136
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.5e-30 Score=268.35 Aligned_cols=150 Identities=33% Similarity=0.555 Sum_probs=122.2
Q ss_pred ceEEEeEEEeecCC----cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCC----CCHH
Q 007122 458 SIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE----VTLE 529 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~----~~~~ 529 (617)
.|+++||+|+|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. .+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 38999999999742 479999999999999999999999999999999999999999999999999864 3456
Q ss_pred HHhcceEEEccCC--CcccccHHHHHhcCCC--CCCHHH----HHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHH
Q 007122 530 SLRKSIGVVPQDT--VLFNDTIFHNIRYGRL--SATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEK 601 (617)
Q Consensus 530 ~lr~~i~~V~Qd~--~LF~gTIreNI~~g~~--~~~de~----i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQr 601 (617)
.+|+.++||+|+| .+|+.|++|||.++.. ..+.++ +.++++.+++++. ........||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~ 151 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEE----------LLARSPFELSGGQM 151 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChh----------hhhCCcccCCHHHH
Confidence 7888999999998 6899999999987632 233333 3334444444311 12345578999999
Q ss_pred HHHHHHHHHhCCCCCC
Q 007122 602 QRVALARAFLKAPPIL 617 (617)
Q Consensus 602 QRlaiARAll~~p~IL 617 (617)
||++|||||+.+|++|
T Consensus 152 qrv~lAraL~~~P~ll 167 (290)
T PRK13634 152 RRVAIAGVLAMEPEVL 167 (290)
T ss_pred HHHHHHHHHHcCCCEE
Confidence 9999999999999985
No 137
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.7e-30 Score=265.44 Aligned_cols=150 Identities=31% Similarity=0.513 Sum_probs=128.8
Q ss_pred cceEEEeEEEeecC-CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCC---CeEEECCEeCCCCCHHHHh
Q 007122 457 GSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS---GSIRIDGQDICEVTLESLR 532 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~---G~I~idG~~i~~~~~~~lr 532 (617)
..|+++|++|+|++ ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++ |+|.+||.++.+.+...++
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 36999999999974 3579999999999999999999999999999999999999998 8999999999888877888
Q ss_pred cceEEEccCC--CcccccHHHHHhcCCC--CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 007122 533 KSIGVVPQDT--VLFNDTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (617)
Q Consensus 533 ~~i~~V~Qd~--~LF~gTIreNI~~g~~--~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRl 604 (617)
++++||+|++ .+++.|+.|||.++.+ ..+. +++.++++..++.++....| .+||||||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHH
Confidence 9999999998 4678999999987632 2333 33566677777766555544 68999999999
Q ss_pred HHHHHHhCCCCCC
Q 007122 605 ALARAFLKAPPIL 617 (617)
Q Consensus 605 aiARAll~~p~IL 617 (617)
+|||||+.+|++|
T Consensus 153 ~laral~~~P~ll 165 (282)
T PRK13640 153 AIAGILAVEPKII 165 (282)
T ss_pred HHHHHHHcCCCEE
Confidence 9999999999985
No 138
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.97 E-value=1.3e-30 Score=262.98 Aligned_cols=151 Identities=34% Similarity=0.584 Sum_probs=124.7
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCC-----CCeEEECCEeCCCC--CHHHH
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-----SGSIRIDGQDICEV--TLESL 531 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~-----~G~I~idG~~i~~~--~~~~l 531 (617)
|+++||+++|++ .++++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+||.++.+. +...+
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 2 IEIENLNLFYGE-KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred EEEEEEEEEECC-eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 789999999974 47999999999999999999999999999999999999998 99999999998763 45677
Q ss_pred hcceEEEccCCCcccccHHHHHhcCCC--C-CC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 007122 532 RKSIGVVPQDTVLFNDTIFHNIRYGRL--S-AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (617)
Q Consensus 532 r~~i~~V~Qd~~LF~gTIreNI~~g~~--~-~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRl 604 (617)
+++++||||++.+|..|++||+.++.. . .+ ++++.++++..++.+++. ........+||||||||+
T Consensus 81 ~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~qrv 153 (247)
T TIGR00972 81 RRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQRL 153 (247)
T ss_pred HhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHHHH
Confidence 889999999999999999999986421 1 12 234455566666653331 223455678999999999
Q ss_pred HHHHHHhCCCCCC
Q 007122 605 ALARAFLKAPPIL 617 (617)
Q Consensus 605 aiARAll~~p~IL 617 (617)
+|||||+++|++|
T Consensus 154 ~laral~~~p~ll 166 (247)
T TIGR00972 154 CIARALAVEPEVL 166 (247)
T ss_pred HHHHHHhcCCCEE
Confidence 9999999999975
No 139
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.97 E-value=3e-30 Score=273.30 Aligned_cols=146 Identities=32% Similarity=0.553 Sum_probs=126.8
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. +++++|
T Consensus 14 ~L~l~~l~~~~~-~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~ 90 (375)
T PRK09452 14 LVELRGISKSFD-GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVNT 90 (375)
T ss_pred eEEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 699999999996 45799999999999999999999999999999999999999999999999999877654 468999
Q ss_pred EccCCCcccc-cHHHHHhcCCC--CCC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 007122 538 VPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (617)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~--~~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAl 610 (617)
|+|++.+|.. |++|||.|+.. ..+ ++++.++++..++.++.++.| ..||||||||+||||||
T Consensus 91 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLARaL 159 (375)
T PRK09452 91 VFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIARAV 159 (375)
T ss_pred EecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999954 99999998632 122 235666777778877776665 47999999999999999
Q ss_pred hCCCCCC
Q 007122 611 LKAPPIL 617 (617)
Q Consensus 611 l~~p~IL 617 (617)
+++|++|
T Consensus 160 ~~~P~ll 166 (375)
T PRK09452 160 VNKPKVL 166 (375)
T ss_pred hcCCCEE
Confidence 9999975
No 140
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.4e-30 Score=256.53 Aligned_cols=146 Identities=25% Similarity=0.428 Sum_probs=121.7
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|+++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++... ...++++++||
T Consensus 1 i~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~ 78 (220)
T cd03265 1 IEVENLVKKYGD-FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGIV 78 (220)
T ss_pred CEEEEEEEEECC-EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEEe
Confidence 579999999964 5799999999999999999999999999999999999999999999999988753 35678899999
Q ss_pred ccCCCcccc-cHHHHHhcCCC--CC----CHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh
Q 007122 539 PQDTVLFND-TIFHNIRYGRL--SA----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (617)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~--~~----~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll 611 (617)
||++.+|.. |++||+.++.. .. .++++.++++..++.++.+.. ...||||||||++||||++
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~la~al~ 147 (220)
T cd03265 79 FQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL-----------VKTYSGGMRRRLEIARSLV 147 (220)
T ss_pred cCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhCCHHHHHHHHHHHHHh
Confidence 999998875 99999976411 11 123456666666766544332 3579999999999999999
Q ss_pred CCCCCC
Q 007122 612 KAPPIL 617 (617)
Q Consensus 612 ~~p~IL 617 (617)
.+|++|
T Consensus 148 ~~p~ll 153 (220)
T cd03265 148 HRPEVL 153 (220)
T ss_pred cCCCEE
Confidence 999975
No 141
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.1e-30 Score=266.61 Aligned_cols=146 Identities=36% Similarity=0.493 Sum_probs=121.3
Q ss_pred EEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHH----hcce
Q 007122 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL----RKSI 535 (617)
Q Consensus 460 ~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~l----r~~i 535 (617)
.++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+ ++++
T Consensus 26 ~~~~~~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTG-QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcC-CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 4567777775 4578999999999999999999999999999999999999999999999999988776543 4689
Q ss_pred EEEccCCCcc-cccHHHHHhcCCC--CC----CHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 007122 536 GVVPQDTVLF-NDTIFHNIRYGRL--SA----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (617)
Q Consensus 536 ~~V~Qd~~LF-~gTIreNI~~g~~--~~----~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiAR 608 (617)
+||||++.+| +.|++||+.++.. .. .++++.++++..++.+++...| .+||||||||++|||
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~lAr 173 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGLAR 173 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHHHH
Confidence 9999999999 4699999987421 11 1344666777777766665544 479999999999999
Q ss_pred HHhCCCCCC
Q 007122 609 AFLKAPPIL 617 (617)
Q Consensus 609 All~~p~IL 617 (617)
||+++|+||
T Consensus 174 al~~~p~il 182 (269)
T cd03294 174 ALAVDPDIL 182 (269)
T ss_pred HHhcCCCEE
Confidence 999999985
No 142
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.1e-30 Score=262.40 Aligned_cols=153 Identities=37% Similarity=0.553 Sum_probs=126.8
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC-----CCCCeEEECCEeCCC--CCHH
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLE 529 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~-----p~~G~I~idG~~i~~--~~~~ 529 (617)
..|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.. .+..
T Consensus 12 ~~l~i~nl~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~ 90 (269)
T PRK14259 12 IIISLQNVTISYGT-FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPV 90 (269)
T ss_pred ceEEEEeEEEEECC-EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHH
Confidence 36999999999964 579999999999999999999999999999999999987 699999999999863 5677
Q ss_pred HHhcceEEEccCCCcccccHHHHHhcCCCC--CC---HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 007122 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRLS--AT---EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (617)
Q Consensus 530 ~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~--~~---de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRl 604 (617)
++|++++||||++.+|..|++||+.++... .. ++++.++++.+++.+. +++........||||||||+
T Consensus 91 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~qrl 163 (269)
T PRK14259 91 EVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDE-------CKDKLNESGYSLSGGQQQRL 163 (269)
T ss_pred HHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcch-------hhhhhCCCcccCCHHHHHHH
Confidence 888899999999999999999999876421 11 2344555665555332 23344556678999999999
Q ss_pred HHHHHHhCCCCCC
Q 007122 605 ALARAFLKAPPIL 617 (617)
Q Consensus 605 aiARAll~~p~IL 617 (617)
+|||||+++|++|
T Consensus 164 ~laral~~~p~ll 176 (269)
T PRK14259 164 CIARTIAIEPEVI 176 (269)
T ss_pred HHHHHHhcCCCEE
Confidence 9999999999975
No 143
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.97 E-value=2.6e-30 Score=256.30 Aligned_cols=148 Identities=28% Similarity=0.440 Sum_probs=123.7
Q ss_pred eEEEeEEEeecCC---cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHH---HHh
Q 007122 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE---SLR 532 (617)
Q Consensus 459 I~~~nvsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~---~lr 532 (617)
|+++|+++.|+++ +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+++.. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 7899999999742 5799999999999999999999999999999999999999999999999999877753 468
Q ss_pred cceEEEccCCCccc-ccHHHHHhcCCC---CCCHH----HHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 007122 533 KSIGVVPQDTVLFN-DTIFHNIRYGRL---SATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (617)
Q Consensus 533 ~~i~~V~Qd~~LF~-gTIreNI~~g~~---~~~de----~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRl 604 (617)
++++|+||++.+|. .|+.||+.++.. ..+.+ ++.++++..++.+++.+. ..+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYY-----------PHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHH
Confidence 89999999999997 699999987531 22222 344555555555544443 458999999999
Q ss_pred HHHHHHhCCCCCC
Q 007122 605 ALARAFLKAPPIL 617 (617)
Q Consensus 605 aiARAll~~p~IL 617 (617)
+||||++++|++|
T Consensus 151 ~laral~~~p~il 163 (220)
T TIGR02982 151 AIARALVHRPKLV 163 (220)
T ss_pred HHHHHHhcCCCEE
Confidence 9999999999975
No 144
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.97 E-value=4.4e-30 Score=257.38 Aligned_cols=150 Identities=31% Similarity=0.550 Sum_probs=122.4
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+... +++++|+
T Consensus 2 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~~ 79 (236)
T TIGR03864 2 LEVAGLSFAYG-ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGVV 79 (236)
T ss_pred EEEEeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEEe
Confidence 78999999996 467999999999999999999999999999999999999999999999999998776644 4589999
Q ss_pred ccCCCc-ccccHHHHHhcCCC--CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCC
Q 007122 539 PQDTVL-FNDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (617)
Q Consensus 539 ~Qd~~L-F~gTIreNI~~g~~--~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~ 615 (617)
||++.+ +..|++||+.++.. ..+.++..+ .+.++++.+ |++.........||||||||++||||++++|+
T Consensus 80 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~p~ 152 (236)
T TIGR03864 80 FQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHRPA 152 (236)
T ss_pred CCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999987 57899999987531 122222211 223344443 55555666777999999999999999999999
Q ss_pred CC
Q 007122 616 IL 617 (617)
Q Consensus 616 IL 617 (617)
+|
T Consensus 153 ll 154 (236)
T TIGR03864 153 LL 154 (236)
T ss_pred EE
Confidence 75
No 145
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.4e-30 Score=261.24 Aligned_cols=148 Identities=27% Similarity=0.496 Sum_probs=125.8
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++|++++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.+++...+++.++|
T Consensus 2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 2 TLRTENLTVGYG-TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEEeEEEEEC-CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 378999999996 4689999999999999999999999999999999999999999999999999988888888889999
Q ss_pred EccCCCcccc-cHHHHHhcCCCC----------CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 007122 538 VPQDTVLFND-TIFHNIRYGRLS----------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606 (617)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~~----------~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlai 606 (617)
+||++.+|.+ |+.||+.++... ..++++.++++..++.+..+ .....||||||||++|
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 149 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-----------RRLTDLSGGQRQRAFL 149 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-----------CCcccCCHHHHHHHHH
Confidence 9999998876 999999876311 11234555566556654333 3457899999999999
Q ss_pred HHHHhCCCCCC
Q 007122 607 ARAFLKAPPIL 617 (617)
Q Consensus 607 ARAll~~p~IL 617 (617)
|||++.+|++|
T Consensus 150 aral~~~p~ll 160 (255)
T PRK11231 150 AMVLAQDTPVV 160 (255)
T ss_pred HHHHhcCCCEE
Confidence 99999999975
No 146
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=4.2e-30 Score=250.96 Aligned_cols=146 Identities=24% Similarity=0.363 Sum_probs=118.9
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.. ....++++++|+
T Consensus 2 l~~~~l~~~~~~-~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~~ 79 (200)
T PRK13540 2 LDVIELDFDYHD-QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCFV 79 (200)
T ss_pred EEEEEEEEEeCC-eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEEe
Confidence 789999999974 579999999999999999999999999999999999999999999999998875 345778899999
Q ss_pred ccCCCcc-cccHHHHHhcCCC-CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCC
Q 007122 539 PQDTVLF-NDTIFHNIRYGRL-SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPI 616 (617)
Q Consensus 539 ~Qd~~LF-~gTIreNI~~g~~-~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~I 616 (617)
+|++.++ ..|++||+.++.. ...++.+.++++..++.+ ..+.. ...||||||||++||||++++|++
T Consensus 80 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~----~~~LS~G~~~rv~laral~~~p~~ 148 (200)
T PRK13540 80 GHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEH-------LIDYP----CGLLSSGQKRQVALLRLWMSKAKL 148 (200)
T ss_pred ccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCch-------hhhCC----hhhcCHHHHHHHHHHHHHhcCCCE
Confidence 9999986 5799999987631 112233444444443322 22222 346999999999999999999997
Q ss_pred C
Q 007122 617 L 617 (617)
Q Consensus 617 L 617 (617)
|
T Consensus 149 l 149 (200)
T PRK13540 149 W 149 (200)
T ss_pred E
Confidence 5
No 147
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.7e-30 Score=259.95 Aligned_cols=152 Identities=28% Similarity=0.487 Sum_probs=119.7
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCC------CCCHHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC------EVTLESL 531 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~------~~~~~~l 531 (617)
.|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++. ..+...+
T Consensus 2 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 2 SIQLNGINCFYG-AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEEeeEEEEC-CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 378999999996 457999999999999999999999999999999999999999999999999873 2234577
Q ss_pred hcceEEEccCCCcccc-cHHHHHhcCC---CCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 007122 532 RKSIGVVPQDTVLFND-TIFHNIRYGR---LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALA 607 (617)
Q Consensus 532 r~~i~~V~Qd~~LF~g-TIreNI~~g~---~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiA 607 (617)
|++++|+||++.+|.+ |++|||.++. ...+.++..+ .+.+.++.+ |++..+.....+||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la 153 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALA-----RAEKLLERL--RLKPYADRFPLHLSGGQQQRVAIA 153 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHH
Confidence 8899999999999975 9999997531 1122222111 122333332 344444445568999999999999
Q ss_pred HHHhCCCCCC
Q 007122 608 RAFLKAPPIL 617 (617)
Q Consensus 608 RAll~~p~IL 617 (617)
||++++|++|
T Consensus 154 ral~~~p~ll 163 (242)
T PRK11124 154 RALMMEPQVL 163 (242)
T ss_pred HHHhcCCCEE
Confidence 9999999975
No 148
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.6e-30 Score=263.33 Aligned_cols=153 Identities=35% Similarity=0.580 Sum_probs=127.0
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC-----CCCeEEECCEeCCC--CCHH
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICE--VTLE 529 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p-----~~G~I~idG~~i~~--~~~~ 529 (617)
+.|+++||+|+|+ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++| ++|+|.+||.++.. .+..
T Consensus 24 ~~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~ 102 (272)
T PRK14236 24 TALEVRNLNLFYG-DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVA 102 (272)
T ss_pred cEEEEEEEEEEEC-CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHH
Confidence 4799999999996 35799999999999999999999999999999999999984 89999999999865 4456
Q ss_pred HHhcceEEEccCCCcccccHHHHHhcCCC--CC-C----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 007122 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA-T----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQ 602 (617)
Q Consensus 530 ~lr~~i~~V~Qd~~LF~gTIreNI~~g~~--~~-~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQ 602 (617)
.+|++++|++|++.+|+.|++||+.++.. .. . ++++.++++.+++.+++. +..+.....|||||||
T Consensus 103 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~q 175 (272)
T PRK14236 103 ELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGGQQQ 175 (272)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHHHHH
Confidence 78899999999999999999999987521 11 1 233555556555544332 3456678899999999
Q ss_pred HHHHHHHHhCCCCCC
Q 007122 603 RVALARAFLKAPPIL 617 (617)
Q Consensus 603 RlaiARAll~~p~IL 617 (617)
|++||||++++|++|
T Consensus 176 rv~laral~~~p~ll 190 (272)
T PRK14236 176 RLVIARAIAIEPEVL 190 (272)
T ss_pred HHHHHHHHHCCCCEE
Confidence 999999999999975
No 149
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2e-30 Score=262.69 Aligned_cols=152 Identities=32% Similarity=0.524 Sum_probs=124.3
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC-----CCCeEEECCEeCC--CCCHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDIC--EVTLES 530 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p-----~~G~I~idG~~i~--~~~~~~ 530 (617)
.|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++. +.+...
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 4 AIETVNLRVYYGS-NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred eEEEEeEEEEeCC-eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 5899999999964 5799999999999999999999999999999999999987 4999999999987 456667
Q ss_pred HhcceEEEccCCCcccc-cHHHHHhcCCC--CC--C----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHH
Q 007122 531 LRKSIGVVPQDTVLFND-TIFHNIRYGRL--SA--T----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEK 601 (617)
Q Consensus 531 lr~~i~~V~Qd~~LF~g-TIreNI~~g~~--~~--~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQr 601 (617)
+|++++||+|++.+|.. |++||+.++.. .. + ++++.++++..++.+++. .........||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 155 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGGQR 155 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHHHH
Confidence 88899999999999975 99999986421 11 1 123445555555543322 224456778999999
Q ss_pred HHHHHHHHHhCCCCCC
Q 007122 602 QRVALARAFLKAPPIL 617 (617)
Q Consensus 602 QRlaiARAll~~p~IL 617 (617)
||++||||++++|++|
T Consensus 156 qrv~laral~~~p~ll 171 (253)
T PRK14267 156 QRLVIARALAMKPKIL 171 (253)
T ss_pred HHHHHHHHHhcCCCEE
Confidence 9999999999999975
No 150
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.3e-30 Score=262.90 Aligned_cols=153 Identities=33% Similarity=0.508 Sum_probs=127.2
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC-----CCCCeEEECCEeCCC--CCHH
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLE 529 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~-----p~~G~I~idG~~i~~--~~~~ 529 (617)
..|+++||+|+|+ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++ |++|+|.+||.++.+ .+..
T Consensus 19 ~~l~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 19 IALSTKDLHVYYG-KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred eEEEEeeEEEEEC-CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence 4799999999996 4689999999999999999999999999999999999997 589999999999864 3456
Q ss_pred HHhcceEEEccCCCcccccHHHHHhcCCC--CC-C----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 007122 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA-T----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQ 602 (617)
Q Consensus 530 ~lr~~i~~V~Qd~~LF~gTIreNI~~g~~--~~-~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQ 602 (617)
.+|+.++||||++.+|..|++|||.++.. .. + ++++.++++..++.+++ ++.+......|||||||
T Consensus 98 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~~q 170 (267)
T PRK14237 98 EMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGGQQQ 170 (267)
T ss_pred HHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHHHHH
Confidence 77889999999999999999999987532 11 1 23345556666654443 23456677899999999
Q ss_pred HHHHHHHHhCCCCCC
Q 007122 603 RVALARAFLKAPPIL 617 (617)
Q Consensus 603 RlaiARAll~~p~IL 617 (617)
|++||||++++|++|
T Consensus 171 rl~laral~~~p~ll 185 (267)
T PRK14237 171 RLCIARAIAVKPDIL 185 (267)
T ss_pred HHHHHHHHhcCCCEE
Confidence 999999999999975
No 151
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.97 E-value=2.8e-30 Score=261.36 Aligned_cols=147 Identities=33% Similarity=0.572 Sum_probs=120.7
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCC-----------
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT----------- 527 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~----------- 527 (617)
|+++||+|+|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++
T Consensus 1 i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFG-ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeC-CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 57999999997 458999999999999999999999999999999999999999999999999987653
Q ss_pred --HHHHhcceEEEccCCCccc-ccHHHHHhcCCC---CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCC
Q 007122 528 --LESLRKSIGVVPQDTVLFN-DTIFHNIRYGRL---SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLS 597 (617)
Q Consensus 528 --~~~lr~~i~~V~Qd~~LF~-gTIreNI~~g~~---~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LS 597 (617)
...+|++++||+|++.+|. .|+.||+.++.. .... +++.++++..++.+ .+......||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS 148 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLAD-----------KADHMPAQLS 148 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------HhhcChhhcC
Confidence 2467889999999999885 799999987421 1222 23344444444433 3444557899
Q ss_pred hHHHHHHHHHHHHhCCCCCC
Q 007122 598 GGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 598 GGQrQRlaiARAll~~p~IL 617 (617)
||||||++|||||+++|++|
T Consensus 149 ~G~~qrv~laral~~~p~ll 168 (252)
T TIGR03005 149 GGQQQRVAIARALAMRPKVM 168 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999975
No 152
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.97 E-value=2.7e-30 Score=272.23 Aligned_cols=146 Identities=36% Similarity=0.553 Sum_probs=122.9
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .+++++|
T Consensus 2 ~L~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~~ 78 (353)
T PRK10851 2 SIEIANIKKSFGR-TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVGF 78 (353)
T ss_pred EEEEEEEEEEeCC-eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEEE
Confidence 3899999999974 579999999999999999999999999999999999999999999999999987654 4578999
Q ss_pred EccCCCccc-ccHHHHHhcCCC------CCC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 007122 538 VPQDTVLFN-DTIFHNIRYGRL------SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606 (617)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~~------~~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlai 606 (617)
|+|++.+|. .|++|||.++.. ..+ ++++.++++..++.++.++ ....||||||||++|
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGq~QRval 147 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR-----------YPAQLSGGQKQRVAL 147 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHHH
Confidence 999999996 599999998632 112 2345556666666554433 346899999999999
Q ss_pred HHHHhCCCCCC
Q 007122 607 ARAFLKAPPIL 617 (617)
Q Consensus 607 ARAll~~p~IL 617 (617)
||||+++|++|
T Consensus 148 ArAL~~~P~ll 158 (353)
T PRK10851 148 ARALAVEPQIL 158 (353)
T ss_pred HHHHhcCCCEE
Confidence 99999999975
No 153
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.97 E-value=2.8e-30 Score=258.14 Aligned_cols=151 Identities=30% Similarity=0.530 Sum_probs=124.0
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHH-hcceEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIGV 537 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~l-r~~i~~ 537 (617)
|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+ ++.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYG-KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeC-CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 57899999996 4579999999999999999999999999999999999999999999999999988776654 567999
Q ss_pred EccCCCcccc-cHHHHHhcCCC--CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCC
Q 007122 538 VPQDTVLFND-TIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (617)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~--~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p 614 (617)
+||++.+|.+ |++||+.++.+ ....++.. ..+++.++.+ |++.........||||||||++||||++.+|
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 152 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALATNP 152 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999987 99999987532 12222211 1233444443 5555566677899999999999999999999
Q ss_pred CCC
Q 007122 615 PIL 617 (617)
Q Consensus 615 ~IL 617 (617)
++|
T Consensus 153 ~ll 155 (232)
T cd03218 153 KFL 155 (232)
T ss_pred CEE
Confidence 975
No 154
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.97 E-value=3.3e-30 Score=251.32 Aligned_cols=146 Identities=25% Similarity=0.396 Sum_probs=123.9
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+ ..++++++|+
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 78 (198)
T TIGR01189 1 LAARNLACSRG-ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILYL 78 (198)
T ss_pred CEEEEEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEEe
Confidence 57899999996 457999999999999999999999999999999999999999999999999988765 4567899999
Q ss_pred ccCCCccc-ccHHHHHhcCCCCC--CHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCC
Q 007122 539 PQDTVLFN-DTIFHNIRYGRLSA--TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (617)
Q Consensus 539 ~Qd~~LF~-gTIreNI~~g~~~~--~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~ 615 (617)
+|++.+|. .|++||+.++.... .++++.++++..++.++.+. ....||||||||++||||++++|+
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~p~ 147 (198)
T TIGR01189 79 GHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDL-----------PAAQLSAGQQRRLALARLWLSRAP 147 (198)
T ss_pred ccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcC-----------ChhhcCHHHHHHHHHHHHHhcCCC
Confidence 99999886 79999997653211 23457777777777765432 235799999999999999999999
Q ss_pred CC
Q 007122 616 IL 617 (617)
Q Consensus 616 IL 617 (617)
+|
T Consensus 148 ll 149 (198)
T TIGR01189 148 LW 149 (198)
T ss_pred EE
Confidence 75
No 155
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.5e-30 Score=273.46 Aligned_cols=146 Identities=28% Similarity=0.446 Sum_probs=123.1
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. +++|+|
T Consensus 3 ~l~i~~l~~~~~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYG-DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVGM 79 (369)
T ss_pred EEEEEEEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEEE
Confidence 489999999996 45799999999999999999999999999999999999999999999999999877653 568999
Q ss_pred EccCCCccc-ccHHHHHhcCCC--CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 007122 538 VPQDTVLFN-DTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (617)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~~--~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAl 610 (617)
|+|++.+|. .|++|||.++.. ..+. +++.++++..++.++.++. ...||||||||++|||||
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~-----------~~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRK-----------PKALSGGQRQRVAIGRTL 148 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCC-----------hhhCCHHHHHHHHHHHHH
Confidence 999999996 599999988632 1222 3455666666665544443 357999999999999999
Q ss_pred hCCCCCC
Q 007122 611 LKAPPIL 617 (617)
Q Consensus 611 l~~p~IL 617 (617)
+++|++|
T Consensus 149 ~~~P~lL 155 (369)
T PRK11000 149 VAEPSVF 155 (369)
T ss_pred hcCCCEE
Confidence 9999985
No 156
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.3e-30 Score=263.23 Aligned_cols=152 Identities=30% Similarity=0.502 Sum_probs=123.1
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC-----CCCCeEEECCEeCCC--CCHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLES 530 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~-----p~~G~I~idG~~i~~--~~~~~ 530 (617)
.|+++|++|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+...
T Consensus 21 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 99 (268)
T PRK14248 21 ILEVKDLSIYYG-EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVN 99 (268)
T ss_pred eEEEEEEEEEeC-CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHH
Confidence 599999999996 4679999999999999999999999999999999999865 799999999999865 34456
Q ss_pred HhcceEEEccCCCcccccHHHHHhcCCC---CCC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL---SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 531 lr~~i~~V~Qd~~LF~gTIreNI~~g~~---~~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
++++++|++|++.+|++|++||+.++.. ... ++.+.++++..++.+.+ .........+||||||||
T Consensus 100 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~qr 172 (268)
T PRK14248 100 LRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-------KDRLHSSALSLSGGQQQR 172 (268)
T ss_pred HhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch-------HHHHhcCcccCCHHHHHH
Confidence 7889999999999999999999986521 111 22344444444443211 223456678999999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
++|||||+.+|++|
T Consensus 173 l~laral~~~p~ll 186 (268)
T PRK14248 173 LCIARTLAMKPAVL 186 (268)
T ss_pred HHHHHHHhCCCCEE
Confidence 99999999999975
No 157
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.97 E-value=2.9e-30 Score=272.46 Aligned_cols=147 Identities=31% Similarity=0.546 Sum_probs=124.4
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCC--CeEEECCEeCCCCCHHHHhcc
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS--GSIRIDGQDICEVTLESLRKS 534 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~--G~I~idG~~i~~~~~~~lr~~ 534 (617)
+.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.+||.++.+.++ .++.
T Consensus 4 ~~l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r~ 80 (362)
T TIGR03258 4 GGIRIDHLRVAYGA-NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKRG 80 (362)
T ss_pred eEEEEEEEEEEECC-eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHCC
Confidence 47999999999974 579999999999999999999999999999999999999999 999999999987665 3568
Q ss_pred eEEEccCCCcccc-cHHHHHhcCCC--CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 007122 535 IGVVPQDTVLFND-TIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALA 607 (617)
Q Consensus 535 i~~V~Qd~~LF~g-TIreNI~~g~~--~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiA 607 (617)
|+||+|++.+|.. |++|||.|+.. ..+. +++.++++..++.++.++.| .+||||||||+|||
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvaLA 149 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIAIA 149 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHHHH
Confidence 9999999999965 99999987631 1232 34555666666655554444 58999999999999
Q ss_pred HHHhCCCCCC
Q 007122 608 RAFLKAPPIL 617 (617)
Q Consensus 608 RAll~~p~IL 617 (617)
|||+++|++|
T Consensus 150 RAL~~~P~ll 159 (362)
T TIGR03258 150 RAIAIEPDVL 159 (362)
T ss_pred HHHhcCCCEE
Confidence 9999999985
No 158
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.97 E-value=4.2e-30 Score=245.06 Aligned_cols=117 Identities=44% Similarity=0.747 Sum_probs=111.5
Q ss_pred eEEEeEEEeecCC-cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 459 IQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 459 I~~~nvsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
|+++|++++|++. .++++|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+++...++++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 5789999999753 579999999999999999999999999999999999999999999999999999998899999999
Q ss_pred EccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 538 VPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 538 V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
|+|++.+|+.|++||+ ||||||||++||||++++|++|
T Consensus 81 ~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 81 LPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred ECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999998 9999999999999999999975
No 159
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.6e-30 Score=264.38 Aligned_cols=149 Identities=29% Similarity=0.458 Sum_probs=126.7
Q ss_pred ceEEEeEEEeecC-----CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCC-HHHH
Q 007122 458 SIQFDNVHFSYLT-----ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT-LESL 531 (617)
Q Consensus 458 ~I~~~nvsF~Y~~-----~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~-~~~l 531 (617)
.|+++|++++|++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 5899999999974 257999999999999999999999999999999999999999999999999997654 3567
Q ss_pred hcceEEEccCC--CcccccHHHHHhcCCC--CCC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 532 RKSIGVVPQDT--VLFNDTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 532 r~~i~~V~Qd~--~LF~gTIreNI~~g~~--~~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
|++++||||+| .+|..|+.||+.++.. ..+ ++++.++++.+++.++..+.| ..||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 88999999998 4777799999987631 122 345666777777777665544 6899999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
++|||||+++|++|
T Consensus 153 v~laral~~~p~ll 166 (280)
T PRK13633 153 VAIAGILAMRPECI 166 (280)
T ss_pred HHHHHHHHcCCCEE
Confidence 99999999999975
No 160
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=5.6e-30 Score=252.24 Aligned_cols=143 Identities=32% Similarity=0.507 Sum_probs=121.5
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|+++|++++|++ +. .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++|+
T Consensus 1 i~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGE-QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCC-Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEEE
Confidence 579999999974 33 39999999999999999999999999999999999999999999999987654 35789999
Q ss_pred ccCCCcccc-cHHHHHhcCCC-C-----CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh
Q 007122 539 PQDTVLFND-TIFHNIRYGRL-S-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (617)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~-~-----~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll 611 (617)
+|++.+|.+ |++||+.++.. . ..++++.++++..++.+.....| ..||||||||++||||++
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVLV 144 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHHh
Confidence 999999975 99999987532 1 12446777788888777666554 479999999999999999
Q ss_pred CCCCCC
Q 007122 612 KAPPIL 617 (617)
Q Consensus 612 ~~p~IL 617 (617)
++|++|
T Consensus 145 ~~p~ll 150 (211)
T cd03298 145 RDKPVL 150 (211)
T ss_pred cCCCEE
Confidence 999975
No 161
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.8e-30 Score=261.14 Aligned_cols=152 Identities=34% Similarity=0.527 Sum_probs=125.3
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC-----CCCeEEECCEeCCCCCHHHHh
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEVTLESLR 532 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p-----~~G~I~idG~~i~~~~~~~lr 532 (617)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.+.+...+|
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 3 KIEIRDLKVSFGQ-VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred eEEEEeeEEEECC-eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 4899999999974 5799999999999999999999999999999999999974 699999999999888888899
Q ss_pred cceEEEccCCCcc-cccHHHHHhcCCC--C--CC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 533 KSIGVVPQDTVLF-NDTIFHNIRYGRL--S--AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 533 ~~i~~V~Qd~~LF-~gTIreNI~~g~~--~--~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
++++||||++.+| +.|++||+.++.. . .. ++++.++++..++.+.+. ........+||||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~qr 154 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQQR 154 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCHHHHHH
Confidence 9999999999755 6899999986531 0 11 234556666666543322 12334456899999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
++||||++++|+||
T Consensus 155 v~laral~~~p~ll 168 (250)
T PRK14247 155 LCIARALAFQPEVL 168 (250)
T ss_pred HHHHHHHhcCCCEE
Confidence 99999999999985
No 162
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.97 E-value=2.8e-30 Score=247.47 Aligned_cols=119 Identities=39% Similarity=0.704 Sum_probs=111.1
Q ss_pred eEEEeEEEeecCC-cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 459 IQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 459 I~~~nvsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
|+++|++|+|++. +++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+. ...+++.++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 5789999999754 4799999999999999999999999999999999999999999999999988776 6678889999
Q ss_pred EccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 538 VPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 538 V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
|+|++.+|+.|++||| ...||||||||++||||++++|++|
T Consensus 80 ~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~l 120 (178)
T cd03247 80 LNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPIV 120 (178)
T ss_pred EccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999998 5689999999999999999999975
No 163
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=6.2e-30 Score=262.21 Aligned_cols=149 Identities=34% Similarity=0.529 Sum_probs=126.5
Q ss_pred ceEEEeEEEeecCC--cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 007122 458 SIQFDNVHFSYLTE--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~--~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i 535 (617)
-|+++||+|+|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+++++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999742 4699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEccCC--CcccccHHHHHhcCCC--CCCHHH----HHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 007122 536 GVVPQDT--VLFNDTIFHNIRYGRL--SATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALA 607 (617)
Q Consensus 536 ~~V~Qd~--~LF~gTIreNI~~g~~--~~~de~----i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiA 607 (617)
+||+|++ .++..|+.|||.++.. ..++++ +.++++.+++.++... ....||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 9999998 4778999999987521 233333 4556666666554433 3468999999999999
Q ss_pred HHHhCCCCCC
Q 007122 608 RAFLKAPPIL 617 (617)
Q Consensus 608 RAll~~p~IL 617 (617)
|||+++|+||
T Consensus 153 raL~~~p~ll 162 (277)
T PRK13642 153 GIIALRPEII 162 (277)
T ss_pred HHHHcCCCEE
Confidence 9999999985
No 164
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.97 E-value=9.3e-30 Score=253.68 Aligned_cols=152 Identities=35% Similarity=0.463 Sum_probs=120.5
Q ss_pred eEEEeEEEeecCC---cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCH---HHHh
Q 007122 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL---ESLR 532 (617)
Q Consensus 459 I~~~nvsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~---~~lr 532 (617)
|+++||+|+|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 7899999999753 379999999999999999999999999999999999999999999999999988774 5778
Q ss_pred cceEEEccCC--Ccc-cccHHHHHhcCC----CCCCHHHHHHHHHHHcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHH
Q 007122 533 KSIGVVPQDT--VLF-NDTIFHNIRYGR----LSATEEEVYDAARRAAIHDTIMNFPAKYS-TVVGERGLKLSGGEKQRV 604 (617)
Q Consensus 533 ~~i~~V~Qd~--~LF-~gTIreNI~~g~----~~~~de~i~~a~~~a~l~~~I~~lp~Gld-T~vge~G~~LSGGQrQRl 604 (617)
++++|++|++ .++ ..|++||+.++. +...+++..+++ ++.++.+ |++ ........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 8999999999 344 579999997542 111112111111 2233333 332 344566688999999999
Q ss_pred HHHHHHhCCCCCC
Q 007122 605 ALARAFLKAPPIL 617 (617)
Q Consensus 605 aiARAll~~p~IL 617 (617)
+||||++.+|++|
T Consensus 155 ~laral~~~p~ll 167 (228)
T cd03257 155 AIARALALNPKLL 167 (228)
T ss_pred HHHHHHhcCCCEE
Confidence 9999999999975
No 165
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=4.4e-30 Score=258.10 Aligned_cols=151 Identities=31% Similarity=0.494 Sum_probs=121.3
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCC--CHHHHhcceE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV--TLESLRKSIG 536 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~--~~~~lr~~i~ 536 (617)
|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+. +...++++++
T Consensus 2 l~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 2 IEFKNVSKHFG-PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EEEEeEEEEEC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 78999999996 46799999999999999999999999999999999999999999999999998764 3457788999
Q ss_pred EEccCCCccc-ccHHHHHhcCCC---CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhC
Q 007122 537 VVPQDTVLFN-DTIFHNIRYGRL---SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612 (617)
Q Consensus 537 ~V~Qd~~LF~-gTIreNI~~g~~---~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~ 612 (617)
|++|++.+|. .|++||+.++.. ..+.++..+ .+.+.++.+ |++.........||||||||++||||+++
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~ 153 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAKV--GLAERAHHYPSELSGGQQQRVAIARALAV 153 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHHhc
Confidence 9999999885 699999987521 122222111 112333332 44444445567899999999999999999
Q ss_pred CCCCC
Q 007122 613 APPIL 617 (617)
Q Consensus 613 ~p~IL 617 (617)
+|++|
T Consensus 154 ~p~ll 158 (240)
T PRK09493 154 KPKLM 158 (240)
T ss_pred CCCEE
Confidence 99975
No 166
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.1e-30 Score=258.80 Aligned_cols=152 Identities=34% Similarity=0.589 Sum_probs=125.1
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCC-----CCeEEECCEeCCC--CCHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-----SGSIRIDGQDICE--VTLES 530 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~-----~G~I~idG~~i~~--~~~~~ 530 (617)
.|+++|++|+|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.+||.++.+ .+...
T Consensus 4 ~l~~~~l~~~~~-~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 4 KIKIRGVNFFYH-KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred eEEEEEEEEEEC-CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 589999999996 457999999999999999999999999999999999999997 6999999999865 34567
Q ss_pred HhcceEEEccCCCcccccHHHHHhcCCC--CC-CH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA-TE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 531 lr~~i~~V~Qd~~LF~gTIreNI~~g~~--~~-~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
+|+.++||||++.+|+.|++|||.++.. .. .. +.+.++++..++.+.+ +........+||||||||
T Consensus 83 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14249 83 LRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-------KDNLHKSGLALSGGQQQR 155 (251)
T ss_pred hhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-------hhHhhCCcccCCHHHHHH
Confidence 8899999999999999999999987531 11 11 2233444444554333 234567788999999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
++||||++.+|++|
T Consensus 156 v~laral~~~p~ll 169 (251)
T PRK14249 156 LCIARVLAIEPEVI 169 (251)
T ss_pred HHHHHHHhcCCCEE
Confidence 99999999999975
No 167
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.97 E-value=3.1e-30 Score=257.53 Aligned_cols=148 Identities=33% Similarity=0.557 Sum_probs=120.3
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHH-HhcceEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES-LRKSIGV 537 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~-lr~~i~~ 537 (617)
|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+... ++++++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYG-QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeC-CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 57999999997 357999999999999999999999999999999999999999999999999998887655 4678999
Q ss_pred EccCCCcccc-cHHHHHhcCCCCC--CHHH-HHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCC
Q 007122 538 VPQDTVLFND-TIFHNIRYGRLSA--TEEE-VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (617)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~~~--~de~-i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~ 613 (617)
+||++.+|.. |++||+.++.... .+++ ..++++..+ +++.........||||||||++||||++++
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 149 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALVTR 149 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999986 9999998763211 1111 122222221 223334456678999999999999999999
Q ss_pred CCCC
Q 007122 614 PPIL 617 (617)
Q Consensus 614 p~IL 617 (617)
|++|
T Consensus 150 p~il 153 (230)
T TIGR03410 150 PKLL 153 (230)
T ss_pred CCEE
Confidence 9975
No 168
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.1e-30 Score=259.91 Aligned_cols=153 Identities=33% Similarity=0.540 Sum_probs=125.1
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC-----CCCeEEECCEeCCC--CCHH
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICE--VTLE 529 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p-----~~G~I~idG~~i~~--~~~~ 529 (617)
+.|+++||+++|++ +++++|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.+ .+..
T Consensus 2 ~~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 2 GKISVKDLDLFYGD-FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80 (250)
T ss_pred CeEEEEEEEEEECC-ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 36899999999974 5799999999999999999999999999999999999863 69999999999875 4556
Q ss_pred HHhcceEEEccCCCcccccHHHHHhcCCC--CC-----CHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 007122 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA-----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQ 602 (617)
Q Consensus 530 ~lr~~i~~V~Qd~~LF~gTIreNI~~g~~--~~-----~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQ 602 (617)
.+|++++||+|++.+|+.|++||+.++.. .. .++++.++++.+++.+.+. .........|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~q 153 (250)
T PRK14240 81 QLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQQQ 153 (250)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHHHH
Confidence 78889999999999999999999987531 11 1234445555555543332 2345567789999999
Q ss_pred HHHHHHHHhCCCCCC
Q 007122 603 RVALARAFLKAPPIL 617 (617)
Q Consensus 603 RlaiARAll~~p~IL 617 (617)
|++||||++.+|++|
T Consensus 154 rv~laral~~~p~ll 168 (250)
T PRK14240 154 RLCIARALAVEPEVL 168 (250)
T ss_pred HHHHHHHHhcCCCEE
Confidence 999999999999975
No 169
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=7.6e-30 Score=262.30 Aligned_cols=153 Identities=34% Similarity=0.574 Sum_probs=126.3
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC-----CCCCeEEECCEeCCC--CCHH
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLE 529 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~-----p~~G~I~idG~~i~~--~~~~ 529 (617)
..|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.+ .+..
T Consensus 38 ~~l~i~~l~~~~~~-~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~ 116 (285)
T PRK14254 38 TVIEARDLNVFYGD-EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPV 116 (285)
T ss_pred ceEEEEEEEEEECC-EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchH
Confidence 35999999999964 579999999999999999999999999999999999997 689999999999864 3456
Q ss_pred HHhcceEEEccCCCcccccHHHHHhcCCC-----CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 007122 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRL-----SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (617)
Q Consensus 530 ~lr~~i~~V~Qd~~LF~gTIreNI~~g~~-----~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRl 604 (617)
.++++++||+|++.+|..|++||+.++.. ...++++.++++..++.+.+. ..+......||||||||+
T Consensus 117 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LSgGe~qrv 189 (285)
T PRK14254 117 ALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDLSGGQQQRL 189 (285)
T ss_pred hhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccCCHHHHHHH
Confidence 78889999999999999999999986421 112345566666665543332 124556779999999999
Q ss_pred HHHHHHhCCCCCC
Q 007122 605 ALARAFLKAPPIL 617 (617)
Q Consensus 605 aiARAll~~p~IL 617 (617)
+|||||+++|+||
T Consensus 190 ~LAraL~~~p~lL 202 (285)
T PRK14254 190 CIARAIAPDPEVI 202 (285)
T ss_pred HHHHHHHcCCCEE
Confidence 9999999999985
No 170
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=6e-30 Score=250.64 Aligned_cols=146 Identities=24% Similarity=0.383 Sum_probs=124.8
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ..++++++|+
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~~ 79 (204)
T PRK13538 2 LEARNLACERDE-RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLYL 79 (204)
T ss_pred eEEEEEEEEECC-EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEEe
Confidence 789999999964 57999999999999999999999999999999999999999999999999987654 4567889999
Q ss_pred ccCCCccc-ccHHHHHhcCCCC---CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCC
Q 007122 539 PQDTVLFN-DTIFHNIRYGRLS---ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (617)
Q Consensus 539 ~Qd~~LF~-gTIreNI~~g~~~---~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p 614 (617)
+|++.++. .|++||+.++.+. .+++++.++++..++.++.+. ....||||||||++||||++++|
T Consensus 80 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~la~al~~~p 148 (204)
T PRK13538 80 GHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDV-----------PVRQLSAGQQRRVALARLWLTRA 148 (204)
T ss_pred CCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhC-----------ChhhcCHHHHHHHHHHHHHhcCC
Confidence 99998886 6999999875321 234567778888887655432 34679999999999999999999
Q ss_pred CCC
Q 007122 615 PIL 617 (617)
Q Consensus 615 ~IL 617 (617)
++|
T Consensus 149 ~ll 151 (204)
T PRK13538 149 PLW 151 (204)
T ss_pred CEE
Confidence 985
No 171
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.6e-30 Score=254.43 Aligned_cols=143 Identities=24% Similarity=0.444 Sum_probs=117.0
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|+++|++++|+ ++++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.. .++++++|+
T Consensus 1 l~~~~l~~~~~-~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~~ 75 (210)
T cd03269 1 LEVENVTKRFG-RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGYL 75 (210)
T ss_pred CEEEEEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEEe
Confidence 57899999996 4679999999999999999999999999999999999999999999999987753 567899999
Q ss_pred ccCCCcccc-cHHHHHhcCCC--CCC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh
Q 007122 539 PQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (617)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~--~~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll 611 (617)
+|++.+|.+ |++||+.++.. ..+ ++++.++++..+ ++........+||||||||++||||++
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrl~la~al~ 144 (210)
T cd03269 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLE-----------LSEYANKRVEELSKGNQQKVQFIAAVI 144 (210)
T ss_pred ccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcC-----------ChHHHhCcHhhCCHHHHHHHHHHHHHh
Confidence 999999975 99999976421 111 122333333333 333344556789999999999999999
Q ss_pred CCCCCC
Q 007122 612 KAPPIL 617 (617)
Q Consensus 612 ~~p~IL 617 (617)
.+|++|
T Consensus 145 ~~p~~l 150 (210)
T cd03269 145 HDPELL 150 (210)
T ss_pred cCCCEE
Confidence 999975
No 172
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=5.8e-30 Score=265.05 Aligned_cols=150 Identities=30% Similarity=0.440 Sum_probs=121.2
Q ss_pred ceEEEeEEEeecCC----cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCC--------
Q 007122 458 SIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE-------- 525 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~-------- 525 (617)
.|+++||+|+|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 38999999999743 269999999999999999999999999999999999999999999999887632
Q ss_pred ----------------CCHHHHhcceEEEccCC--CcccccHHHHHhcCCC--CCCHHH----HHHHHHHHcHHHHHHhC
Q 007122 526 ----------------VTLESLRKSIGVVPQDT--VLFNDTIFHNIRYGRL--SATEEE----VYDAARRAAIHDTIMNF 581 (617)
Q Consensus 526 ----------------~~~~~lr~~i~~V~Qd~--~LF~gTIreNI~~g~~--~~~de~----i~~a~~~a~l~~~I~~l 581 (617)
.+...+|++|+||+|+| .+|..|++|||.++.. ..+.++ +.++++..++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----- 156 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE----- 156 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh-----
Confidence 13467889999999986 7899999999998732 233333 344444444421
Q ss_pred CCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 582 PAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 582 p~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
.........||||||||++|||||+.+|++|
T Consensus 157 -----~~~~~~~~~LSgGqkqrvalA~aL~~~P~lL 187 (305)
T PRK13651 157 -----SYLQRSPFELSGGQKRRVALAGILAMEPDFL 187 (305)
T ss_pred -----hhhhCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 1233556789999999999999999999985
No 173
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.96 E-value=4.2e-30 Score=252.17 Aligned_cols=145 Identities=32% Similarity=0.507 Sum_probs=118.7
Q ss_pred EEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCH----HHHhcceE
Q 007122 461 FDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL----ESLRKSIG 536 (617)
Q Consensus 461 ~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~----~~lr~~i~ 536 (617)
++||++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..++. ...+++++
T Consensus 1 i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFG-DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEEC-CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 478999996 4579999999999999999999999999999999999999999999999999765542 24577899
Q ss_pred EEccCCCccc-ccHHHHHhcCCC--CC----CHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 007122 537 VVPQDTVLFN-DTIFHNIRYGRL--SA----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (617)
Q Consensus 537 ~V~Qd~~LF~-gTIreNI~~g~~--~~----~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARA 609 (617)
||+|++.+|. .|++||+.++.. .. .++++.++++..++.+.. .....+||||||||++||||
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qr~~lara 148 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKL-----------KQKIYELSGGEQQRVALARA 148 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhh-----------cCChhhCCHHHHHHHHHHHH
Confidence 9999999997 699999987421 11 123455556655554432 33456799999999999999
Q ss_pred HhCCCCCC
Q 007122 610 FLKAPPIL 617 (617)
Q Consensus 610 ll~~p~IL 617 (617)
|+++|++|
T Consensus 149 l~~~p~ll 156 (206)
T TIGR03608 149 ILKDPPLI 156 (206)
T ss_pred HHcCCCEE
Confidence 99999985
No 174
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=5.9e-30 Score=271.51 Aligned_cols=146 Identities=32% Similarity=0.490 Sum_probs=122.9
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+||.++.+.++ .+++++|
T Consensus 19 ~l~l~~v~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~ 95 (377)
T PRK11607 19 LLEIRNLTKSFD-GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPINM 95 (377)
T ss_pred eEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCEEE
Confidence 699999999996 3579999999999999999999999999999999999999999999999999987664 4678999
Q ss_pred EccCCCcccc-cHHHHHhcCCC--CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 007122 538 VPQDTVLFND-TIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (617)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~--~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAl 610 (617)
|+|++.+|.. |+.|||.|+.. ..+. +++.++++..++.++.++ ....||||||||+||||||
T Consensus 96 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-----------~~~~LSgGq~QRVaLARAL 164 (377)
T PRK11607 96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKR-----------KPHQLSGGQRQRVALARSL 164 (377)
T ss_pred EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHHHHH
Confidence 9999999965 99999998732 1232 334455555555544433 3357999999999999999
Q ss_pred hCCCCCC
Q 007122 611 LKAPPIL 617 (617)
Q Consensus 611 l~~p~IL 617 (617)
+++|++|
T Consensus 165 ~~~P~lL 171 (377)
T PRK11607 165 AKRPKLL 171 (377)
T ss_pred hcCCCEE
Confidence 9999985
No 175
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.96 E-value=6.1e-30 Score=261.24 Aligned_cols=148 Identities=32% Similarity=0.493 Sum_probs=120.7
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHH---HHhcc
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE---SLRKS 534 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~---~lr~~ 534 (617)
.|+++||+++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+++.. .++++
T Consensus 7 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~ 85 (269)
T PRK11831 7 LVDMRGVSFTRG-NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85 (269)
T ss_pred eEEEeCeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhc
Confidence 599999999996 45799999999999999999999999999999999999999999999999999877654 35778
Q ss_pred eEEEccCCCcccc-cHHHHHhcCCC---CCCHH----HHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 007122 535 IGVVPQDTVLFND-TIFHNIRYGRL---SATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606 (617)
Q Consensus 535 i~~V~Qd~~LF~g-TIreNI~~g~~---~~~de----~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlai 606 (617)
++||||++.+|.+ |++||+.++.. ..+.+ ++.++++..++.+. .......||||||||++|
T Consensus 86 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq~qrv~l 154 (269)
T PRK11831 86 MSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGA-----------AKLMPSELSGGMARRAAL 154 (269)
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHHH
Confidence 9999999999986 99999976421 12222 23334444444332 223446899999999999
Q ss_pred HHHHhCCCCCC
Q 007122 607 ARAFLKAPPIL 617 (617)
Q Consensus 607 ARAll~~p~IL 617 (617)
||||+++|++|
T Consensus 155 aral~~~p~ll 165 (269)
T PRK11831 155 ARAIALEPDLI 165 (269)
T ss_pred HHHHhcCCCEE
Confidence 99999999975
No 176
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.96 E-value=5.6e-30 Score=244.63 Aligned_cols=149 Identities=39% Similarity=0.603 Sum_probs=127.0
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHH---HHhc
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE---SLRK 533 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~---~lr~ 533 (617)
..|++++|+|+|. ++.|++|+||+|++||.++|+|+||||||||+|++.|+..|++|+|.++|.|+.+++.+ .+|+
T Consensus 7 ~~I~vr~v~~~fG-~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 7 PLIEVRGVTKSFG-DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred ceEEEeeeeeecC-CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 3699999999995 56899999999999999999999999999999999999999999999999999999965 5699
Q ss_pred ceEEEccCCCcccc-cHHHHHhcCC---CCCCHHHHHH----HHHHHcHHHH-HHhCCCCccccccCCCCCCChHHHHHH
Q 007122 534 SIGVVPQDTVLFND-TIFHNIRYGR---LSATEEEVYD----AARRAAIHDT-IMNFPAKYSTVVGERGLKLSGGEKQRV 604 (617)
Q Consensus 534 ~i~~V~Qd~~LF~g-TIreNI~~g~---~~~~de~i~~----a~~~a~l~~~-I~~lp~GldT~vge~G~~LSGGQrQRl 604 (617)
++|+++|+..||+. |++||+.|-- .+.+++++.+ .++.+||... -+.+| ..||||.+.|+
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KRv 154 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKRV 154 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHHH
Confidence 99999999999955 9999999842 2345554443 3445566555 33444 57999999999
Q ss_pred HHHHHHhCCCCCC
Q 007122 605 ALARAFLKAPPIL 617 (617)
Q Consensus 605 aiARAll~~p~IL 617 (617)
|||||+.-||+||
T Consensus 155 aLARAialdPell 167 (263)
T COG1127 155 ALARAIALDPELL 167 (263)
T ss_pred HHHHHHhcCCCEE
Confidence 9999999999985
No 177
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.8e-30 Score=260.27 Aligned_cols=152 Identities=33% Similarity=0.539 Sum_probs=122.7
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC-----CCCCeEEECCEeCCC--CCHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLES 530 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~-----p~~G~I~idG~~i~~--~~~~~ 530 (617)
.|+++|++|+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.+ .+...
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 4 IISAKDVHLSYGN-YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred eEEEEeeEEEECC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 5899999999964 579999999999999999999999999999999999997 479999999999864 34556
Q ss_pred HhcceEEEccCCCcccccHHHHHhcCCC--CCC-----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--SAT-----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 531 lr~~i~~V~Qd~~LF~gTIreNI~~g~~--~~~-----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
+++.++||+|++.+|+.|++||+.++.. ... ++++.++++..++++.. .........+||||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14251 83 LRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQQR 155 (251)
T ss_pred hhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHHHH
Confidence 7889999999999999999999987531 111 12344444544443211 122345678999999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
++||||++++|++|
T Consensus 156 ~~laral~~~p~ll 169 (251)
T PRK14251 156 ICIARALAVRPKVV 169 (251)
T ss_pred HHHHHHHhcCCCEE
Confidence 99999999999975
No 178
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.96 E-value=9.9e-30 Score=250.82 Aligned_cols=143 Identities=36% Similarity=0.593 Sum_probs=121.7
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
++++||+++|+. .++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ .+++.++||
T Consensus 1 ~~~~~l~~~~~~---~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~v 75 (213)
T TIGR01277 1 LALDKVRYEYEH---LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSML 75 (213)
T ss_pred CeEEeeeEEeCC---cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEEE
Confidence 468999999962 568999999999999999999999999999999999999999999999987644 467889999
Q ss_pred ccCCCcccc-cHHHHHhcCC-CC-----CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh
Q 007122 539 PQDTVLFND-TIFHNIRYGR-LS-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (617)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~-~~-----~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll 611 (617)
+|++.+|.+ |++||+.++. +. ..++++.++++..++.+...+.|. +||||||||++||||++
T Consensus 76 ~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~G~~qrl~laral~ 144 (213)
T TIGR01277 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE-----------QLSGGQRQRVALARCLV 144 (213)
T ss_pred eccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcc-----------cCCHHHHHHHHHHHHHh
Confidence 999999974 9999997641 11 123456777888888776666553 79999999999999999
Q ss_pred CCCCCC
Q 007122 612 KAPPIL 617 (617)
Q Consensus 612 ~~p~IL 617 (617)
++|+++
T Consensus 145 ~~p~ll 150 (213)
T TIGR01277 145 RPNPIL 150 (213)
T ss_pred cCCCEE
Confidence 999975
No 179
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.96 E-value=1.2e-29 Score=257.39 Aligned_cols=148 Identities=32% Similarity=0.491 Sum_probs=124.5
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...++++++|
T Consensus 2 ~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 2 MLEARNLSVRLGG-RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred eEEEEeEEEEeCC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 4889999999974 579999999999999999999999999999999999999999999999999988888888889999
Q ss_pred EccCCCc-ccccHHHHHhcCCCCC------CHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 007122 538 VPQDTVL-FNDTIFHNIRYGRLSA------TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (617)
Q Consensus 538 V~Qd~~L-F~gTIreNI~~g~~~~------~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAl 610 (617)
++|++.+ +..|++||+.++.... .++++.++++..++.+.. ......||||||||++|||||
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGe~qrv~la~al 149 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLA-----------GRDYPQLSGGEQQRVQLARVL 149 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHh-----------cCCcccCCHHHHHHHHHHHHH
Confidence 9999987 6789999998753211 123345555555554433 334578999999999999999
Q ss_pred h------CCCCCC
Q 007122 611 L------KAPPIL 617 (617)
Q Consensus 611 l------~~p~IL 617 (617)
+ .+|++|
T Consensus 150 ~~~~~~~~~p~ll 162 (258)
T PRK13548 150 AQLWEPDGPPRWL 162 (258)
T ss_pred hcccccCCCCCEE
Confidence 9 588875
No 180
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=9.5e-30 Score=255.83 Aligned_cols=152 Identities=27% Similarity=0.512 Sum_probs=125.7
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHH-HhcceE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES-LRKSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~-lr~~i~ 536 (617)
.|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+... +|+.++
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAYK-GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEeC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 489999999996 468999999999999999999999999999999999999999999999999998887644 578899
Q ss_pred EEccCCCccc-ccHHHHHhcCCC---CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhC
Q 007122 537 VVPQDTVLFN-DTIFHNIRYGRL---SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612 (617)
Q Consensus 537 ~V~Qd~~LF~-gTIreNI~~g~~---~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~ 612 (617)
||||++.+|. .|++||+.++.. ..+.++. ...+++.++.+ |++.........||||||||++||||+++
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 154 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALAA 154 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHhc
Confidence 9999999997 499999987531 1222221 12234455554 45555666778999999999999999999
Q ss_pred CCCCC
Q 007122 613 APPIL 617 (617)
Q Consensus 613 ~p~IL 617 (617)
+|++|
T Consensus 155 ~p~ll 159 (241)
T PRK10895 155 NPKFI 159 (241)
T ss_pred CCCEE
Confidence 99975
No 181
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.9e-29 Score=258.19 Aligned_cols=152 Identities=26% Similarity=0.420 Sum_probs=125.0
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC-----CCCeEEECCEeCCCCC-HHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEVT-LESL 531 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p-----~~G~I~idG~~i~~~~-~~~l 531 (617)
.|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.+.+ ...+
T Consensus 21 ~l~i~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~ 99 (276)
T PRK14271 21 AMAAVNLTLGFA-GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEF 99 (276)
T ss_pred EEEEeeEEEEEC-CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHH
Confidence 689999999996 46899999999999999999999999999999999999986 6999999999988764 4577
Q ss_pred hcceEEEccCCCcccccHHHHHhcCCC---CCCHHHHHH----HHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 007122 532 RKSIGVVPQDTVLFNDTIFHNIRYGRL---SATEEEVYD----AARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (617)
Q Consensus 532 r~~i~~V~Qd~~LF~gTIreNI~~g~~---~~~de~i~~----a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRl 604 (617)
+++++||||++.+|+.|++|||.++.. ..++++..+ .++..++ +..+++.+.....+||||||||+
T Consensus 100 ~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 100 RRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGL-------WDAVKDRLSDSPFRLSGGQQQLL 172 (276)
T ss_pred hhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCC-------CchhhhHhhCCcccCCHHHHHHH
Confidence 889999999999999999999987531 124444322 2222232 22233455677889999999999
Q ss_pred HHHHHHhCCCCCC
Q 007122 605 ALARAFLKAPPIL 617 (617)
Q Consensus 605 aiARAll~~p~IL 617 (617)
+|||||+++|++|
T Consensus 173 ~LAral~~~p~ll 185 (276)
T PRK14271 173 CLARTLAVNPEVL 185 (276)
T ss_pred HHHHHHhcCCCEE
Confidence 9999999999975
No 182
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=7.3e-30 Score=258.08 Aligned_cols=152 Identities=36% Similarity=0.605 Sum_probs=126.6
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC-----CCCCeEEECCEeCCC--CCHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLES 530 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~-----p~~G~I~idG~~i~~--~~~~~ 530 (617)
.|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.+||.++.+ .+...
T Consensus 3 ~l~~~~v~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 3 RIEVENLNTYFD-DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEEeEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 488999999997 4679999999999999999999999999999999999864 489999999999875 34567
Q ss_pred HhcceEEEccCCCcccccHHHHHhcCCC--CC-C----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA-T----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 531 lr~~i~~V~Qd~~LF~gTIreNI~~g~~--~~-~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
++++++||||++.+|+.|++||+.++.. .. + ++++.++++.+++.+++.. .+......||||||||
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~qr 154 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALGLSGGQQQR 154 (250)
T ss_pred HhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCcccCCHHHHHH
Confidence 8899999999999999999999987521 11 1 2335566777777665543 2345677999999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
++||||++++|++|
T Consensus 155 v~laral~~~p~ll 168 (250)
T PRK14266 155 LCIARTIAVSPEVI 168 (250)
T ss_pred HHHHHHHHcCCCEE
Confidence 99999999999985
No 183
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8.4e-30 Score=258.09 Aligned_cols=152 Identities=30% Similarity=0.531 Sum_probs=124.9
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC-----CCCeEEECCEeCCCC--CHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEV--TLES 530 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p-----~~G~I~idG~~i~~~--~~~~ 530 (617)
.|+++|++|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.+||.++.+. +...
T Consensus 6 ~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 84 (253)
T PRK14261 6 ILSTKNLNLWYG-EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVA 84 (253)
T ss_pred eEEEeeeEEEEC-CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhh
Confidence 589999999996 45799999999999999999999999999999999999763 489999999999876 4567
Q ss_pred HhcceEEEccCCCcccccHHHHHhcCCC--CC-C----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA-T----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 531 lr~~i~~V~Qd~~LF~gTIreNI~~g~~--~~-~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
.++.++|++|++.+|+.|++|||.++.. +. + ++.+.++++.+++.+ ++.+...+....||||||||
T Consensus 85 ~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~qr 157 (253)
T PRK14261 85 LRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD-------EVKDRLHDSALSLSGGQQQR 157 (253)
T ss_pred hhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCch-------hhHHHhhcChhhCCHHHHHH
Confidence 7889999999999999999999987632 11 1 123444444444433 23344667788999999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
++||||++.+|++|
T Consensus 158 v~laral~~~p~ll 171 (253)
T PRK14261 158 LCIARTLAVNPEVI 171 (253)
T ss_pred HHHHHHHhcCCCEE
Confidence 99999999999975
No 184
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.7e-29 Score=259.70 Aligned_cols=153 Identities=31% Similarity=0.518 Sum_probs=122.1
Q ss_pred ceEEEeEEEeecCC----cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCC----CHH
Q 007122 458 SIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV----TLE 529 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~----~~~ 529 (617)
.|+++||+|+|++. .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 38899999999742 4799999999999999999999999999999999999999999999999998764 356
Q ss_pred HHhcceEEEccCC--CcccccHHHHHhcCCC--CCCHHHHHHHHHHHcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHH
Q 007122 530 SLRKSIGVVPQDT--VLFNDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYS-TVVGERGLKLSGGEKQRV 604 (617)
Q Consensus 530 ~lr~~i~~V~Qd~--~LF~gTIreNI~~g~~--~~~de~i~~a~~~a~l~~~I~~lp~Gld-T~vge~G~~LSGGQrQRl 604 (617)
.+|+.|+|+||++ .+|+.|++|||.++.. ..+.++..+.+ .+.++.+ |++ .........||||||||+
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv 154 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALA-----REKLALV--GISESLFEKNPFELSGGQMRRV 154 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCChhhhhCCcccCCHHHHHHH
Confidence 7888999999998 6889999999987521 22333332221 1222222 332 123455678999999999
Q ss_pred HHHHHHhCCCCCC
Q 007122 605 ALARAFLKAPPIL 617 (617)
Q Consensus 605 aiARAll~~p~IL 617 (617)
+|||||+++|++|
T Consensus 155 ~la~al~~~p~ll 167 (280)
T PRK13649 155 AIAGILAMEPKIL 167 (280)
T ss_pred HHHHHHHcCCCEE
Confidence 9999999999985
No 185
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=2.2e-30 Score=233.23 Aligned_cols=140 Identities=35% Similarity=0.567 Sum_probs=120.4
Q ss_pred ec-CCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCccc
Q 007122 468 YL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN 546 (617)
Q Consensus 468 Y~-~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~ 546 (617)
|. .+.++|+++||++.+||.+||+||||||||||+|.++-|..|++|++++.|.|++.++++.+|.+|+||-|.|.||.
T Consensus 11 y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 11 YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred hhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 44 46799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHhcC----CCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 547 DTIFHNIRYG----RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 547 gTIreNI~~g----~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
+||.||+.|. +...+.+...+-++++++.+ +.+..+-.+||||||||+||+|-|---|+||
T Consensus 91 ~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~----------~~L~k~it~lSGGE~QriAliR~Lq~~P~IL 155 (223)
T COG4619 91 DTVEDNLIFPWQIRNRRPDRAAALDLLARFALPD----------SILTKNITELSGGEKQRIALIRNLQFMPKIL 155 (223)
T ss_pred cchhhccccchHHhccCCChHHHHHHHHHcCCch----------hhhcchhhhccchHHHHHHHHHHhhcCCceE
Confidence 9999999774 12233344444555555433 4455677899999999999999999999886
No 186
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1e-29 Score=258.23 Aligned_cols=152 Identities=31% Similarity=0.531 Sum_probs=124.1
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC--C---CCCeEEECCEeCCC--CCHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD--T---HSGSIRIDGQDICE--VTLES 530 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~--p---~~G~I~idG~~i~~--~~~~~ 530 (617)
.|+++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+...
T Consensus 12 ~l~i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 90 (259)
T PRK14274 12 VYQINGMNLWYG-QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVE 90 (259)
T ss_pred eEEEeeEEEEEC-CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHH
Confidence 599999999997 3579999999999999999999999999999999999997 3 59999999999864 44567
Q ss_pred HhcceEEEccCCCcccccHHHHHhcCCCC---CCHH----HHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRLS---ATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 531 lr~~i~~V~Qd~~LF~gTIreNI~~g~~~---~~de----~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
+|++++||||++.+|+.|++||+.++... .+++ ++.++++..++.+++. +.+......||||||||
T Consensus 91 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~qr 163 (259)
T PRK14274 91 LRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQQR 163 (259)
T ss_pred HhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHHHH
Confidence 88899999999999999999999875311 1222 2344455555544332 23456677899999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
++||||++++|++|
T Consensus 164 v~laral~~~p~ll 177 (259)
T PRK14274 164 LCIARALATNPDVL 177 (259)
T ss_pred HHHHHHHhcCCCEE
Confidence 99999999999975
No 187
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.1e-29 Score=258.71 Aligned_cols=152 Identities=32% Similarity=0.522 Sum_probs=127.1
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC-----CCCCeEEECCEeCC--CCCHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDIC--EVTLES 530 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~-----p~~G~I~idG~~i~--~~~~~~ 530 (617)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++. +.+...
T Consensus 10 ~l~i~~v~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 88 (264)
T PRK14243 10 VLRTENLNVYYGS-FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE 88 (264)
T ss_pred EEEEeeeEEEECC-EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHH
Confidence 5999999999964 579999999999999999999999999999999999986 47999999999985 345667
Q ss_pred HhcceEEEccCCCcccccHHHHHhcCCCC--C---CHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 007122 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRLS--A---TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605 (617)
Q Consensus 531 lr~~i~~V~Qd~~LF~gTIreNI~~g~~~--~---~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRla 605 (617)
++++++||+|++.+|+.|++|||.++... . .++++.++++.+++.+++.. .......+||||||||++
T Consensus 89 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qrv~ 161 (264)
T PRK14243 89 VRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQRLC 161 (264)
T ss_pred HhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHHHH
Confidence 88899999999999999999999875321 1 13445566677777655532 245567789999999999
Q ss_pred HHHHHhCCCCCC
Q 007122 606 LARAFLKAPPIL 617 (617)
Q Consensus 606 iARAll~~p~IL 617 (617)
|||||+++|++|
T Consensus 162 laral~~~p~ll 173 (264)
T PRK14243 162 IARAIAVQPEVI 173 (264)
T ss_pred HHHHHhcCCCEE
Confidence 999999999985
No 188
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1e-29 Score=259.12 Aligned_cols=149 Identities=26% Similarity=0.406 Sum_probs=127.1
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~ 536 (617)
..|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+++.++
T Consensus 6 ~~l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (265)
T PRK10253 6 ARLRGEQLTLGYG-KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84 (265)
T ss_pred cEEEEEEEEEEEC-CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 3799999999997 457999999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEccCCCccc-ccHHHHHhcCC-CC---------CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 007122 537 VVPQDTVLFN-DTIFHNIRYGR-LS---------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605 (617)
Q Consensus 537 ~V~Qd~~LF~-gTIreNI~~g~-~~---------~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRla 605 (617)
||||++.+|. .|++||+.++. +. ..++++.++++..++.++.+ .....||||||||++
T Consensus 85 ~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrv~ 153 (265)
T PRK10253 85 LLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD-----------QSVDTLSGGQRQRAW 153 (265)
T ss_pred EeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCChHHHHHHH
Confidence 9999998874 69999998752 11 11234556666666655433 345789999999999
Q ss_pred HHHHHhCCCCCC
Q 007122 606 LARAFLKAPPIL 617 (617)
Q Consensus 606 iARAll~~p~IL 617 (617)
||||++++|++|
T Consensus 154 laral~~~p~ll 165 (265)
T PRK10253 154 IAMVLAQETAIM 165 (265)
T ss_pred HHHHHhcCCCEE
Confidence 999999999975
No 189
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=7e-30 Score=259.45 Aligned_cols=152 Identities=34% Similarity=0.559 Sum_probs=126.1
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC-----CCCeEEECCEeCCC--CCHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICE--VTLES 530 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p-----~~G~I~idG~~i~~--~~~~~ 530 (617)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.+ .+...
T Consensus 7 ~l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (259)
T PRK14260 7 AIKVKDLSFYYNT-SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR 85 (259)
T ss_pred eEEEEEEEEEECC-eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence 6999999999963 5799999999999999999999999999999999999985 48999999999864 45567
Q ss_pred HhcceEEEccCCCcccccHHHHHhcCCC------CCC-HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL------SAT-EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 531 lr~~i~~V~Qd~~LF~gTIreNI~~g~~------~~~-de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
++++++||+|++.+|+.|++||+.++.. +.. ++.+.++++.+++.+++.. ........||||||||
T Consensus 86 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~qr 158 (259)
T PRK14260 86 LRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQQQR 158 (259)
T ss_pred hhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHHHH
Confidence 8889999999999999999999987521 111 2335566666777554432 2345677899999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
++|||||+++|++|
T Consensus 159 v~laral~~~p~ll 172 (259)
T PRK14260 159 LCIARALAIKPKVL 172 (259)
T ss_pred HHHHHHHhcCCCEE
Confidence 99999999999975
No 190
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.5e-29 Score=256.53 Aligned_cols=157 Identities=18% Similarity=0.287 Sum_probs=124.9
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHH-hcceE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~l-r~~i~ 536 (617)
.|+++|++++|+ +.++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+ +..++
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (255)
T PRK11300 5 LLSVSGLMMRFG-GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVV 83 (255)
T ss_pred eEEEeeEEEEEC-CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeE
Confidence 589999999996 4689999999999999999999999999999999999999999999999999998876655 45699
Q ss_pred EEccCCCcccc-cHHHHHhcCCCCCCH----------HHHHH--HHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 537 VVPQDTVLFND-TIFHNIRYGRLSATE----------EEVYD--AARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~~~~d----------e~i~~--a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
||||++.+|.+ |++|||.++.....+ ..+.+ ......+.+.++.+ |++........+||||||||
T Consensus 84 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qr 161 (255)
T PRK11300 84 RTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQRR 161 (255)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHHHH
Confidence 99999999985 999999975311000 00000 00011233444443 55556667778999999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
++||||++.+|++|
T Consensus 162 v~la~al~~~p~ll 175 (255)
T PRK11300 162 LEIARCMVTQPEIL 175 (255)
T ss_pred HHHHHHHhcCCCEE
Confidence 99999999999975
No 191
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.96 E-value=7e-30 Score=247.34 Aligned_cols=139 Identities=32% Similarity=0.487 Sum_probs=112.9
Q ss_pred ecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCC--CCHHHHhcceEEEccCC--C
Q 007122 468 YLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE--VTLESLRKSIGVVPQDT--V 543 (617)
Q Consensus 468 Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~--~~~~~lr~~i~~V~Qd~--~ 543 (617)
|++++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.. .....+++.++||+|++ .
T Consensus 1 ~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 1 YPGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred CCCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 3345679999999999999999999999999999999999999999999999999852 23456788999999998 5
Q ss_pred cccccHHHHHhcCCC--CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 544 LFNDTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 544 LF~gTIreNI~~g~~--~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
+|..|++||+.++.. ..++ +++.++++..++.++.+. ....||||||||++|||||+++|++|
T Consensus 81 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p~ll 149 (190)
T TIGR01166 81 LFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRER-----------PTHCLSGGEKKRVAIAGAVAMRPDVL 149 (190)
T ss_pred cccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhC-----------ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 888999999987521 2232 234555666666554433 33679999999999999999999975
No 192
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.96 E-value=6e-30 Score=254.70 Aligned_cols=154 Identities=29% Similarity=0.463 Sum_probs=118.1
Q ss_pred eEEEeEEEeecCC---cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC---CCCCeEEECCEeCCCCCHHHHh
Q 007122 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD---THSGSIRIDGQDICEVTLESLR 532 (617)
Q Consensus 459 I~~~nvsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~---p~~G~I~idG~~i~~~~~~~lr 532 (617)
++|+||+|+|+++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 6799999999864 689999999999999999999999999999999999999 99999999999875 35678
Q ss_pred cceEEEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHcHHH-HHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 007122 533 KSIGVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHD-TIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (617)
Q Consensus 533 ~~i~~V~Qd~~LF~g-TIreNI~~g~~~~~de~i~~a~~~a~l~~-~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAl 610 (617)
++++|+||++.+|.+ |++||+.++......+...++.+....++ .++.+ |++.........||||||||++||||+
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence 899999999999987 99999986421100000001111111111 22221 232233345678999999999999999
Q ss_pred hCCCCCC
Q 007122 611 LKAPPIL 617 (617)
Q Consensus 611 l~~p~IL 617 (617)
+++|++|
T Consensus 159 ~~~p~il 165 (226)
T cd03234 159 LWDPKVL 165 (226)
T ss_pred HhCCCEE
Confidence 9999975
No 193
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.1e-29 Score=254.61 Aligned_cols=153 Identities=29% Similarity=0.476 Sum_probs=121.6
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHH-HhcceE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES-LRKSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~-lr~~i~ 536 (617)
.|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+... +++.++
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 5 MLSFDKVSAHYG-KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred EEEEEeEEEeeC-CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 489999999996 467999999999999999999999999999999999999999999999999998887654 677899
Q ss_pred EEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCC
Q 007122 537 VVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (617)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~ 615 (617)
|++|++.+|.+ |++||+.++......++..+.++ +.++.++...+ ........||||||||++||||++++|+
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~l~~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK-----WVYELFPRLHE-RRIQRAGTMSGGEQQMLAIGRALMSQPR 157 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccChhHHHHHHH-----HHHHHHHHHHH-HHhCchhhCCHHHHHHHHHHHHHHhCCC
Confidence 99999999985 99999987642222222222221 22222211111 1234567899999999999999999999
Q ss_pred CC
Q 007122 616 IL 617 (617)
Q Consensus 616 IL 617 (617)
||
T Consensus 158 il 159 (237)
T PRK11614 158 LL 159 (237)
T ss_pred EE
Confidence 85
No 194
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=7e-30 Score=261.53 Aligned_cols=148 Identities=29% Similarity=0.500 Sum_probs=121.4
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCC--CCHHHHhcceE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE--VTLESLRKSIG 536 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~--~~~~~lr~~i~ 536 (617)
|+++||+++|++..++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.. .+...++++|+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 81 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVG 81 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheE
Confidence 7899999999755679999999999999999999999999999999999999999999999999852 23456788999
Q ss_pred EEccCC--CcccccHHHHHhcCCC--CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 007122 537 VVPQDT--VLFNDTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (617)
Q Consensus 537 ~V~Qd~--~LF~gTIreNI~~g~~--~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiAR 608 (617)
|+||++ .+|+.|++|||.++.. ..+. +++.++++..++.++.+ .....||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~Gq~qrv~lar 150 (275)
T PRK13639 82 IVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN-----------KPPHHLSGGQKKRVAIAG 150 (275)
T ss_pred EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhc-----------CChhhCCHHHHHHHHHHH
Confidence 999998 5789999999987531 1222 23445555555543222 234589999999999999
Q ss_pred HHhCCCCCC
Q 007122 609 AFLKAPPIL 617 (617)
Q Consensus 609 All~~p~IL 617 (617)
|++.+|++|
T Consensus 151 al~~~p~ll 159 (275)
T PRK13639 151 ILAMKPEII 159 (275)
T ss_pred HHhcCCCEE
Confidence 999999975
No 195
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=5.9e-30 Score=255.75 Aligned_cols=145 Identities=36% Similarity=0.550 Sum_probs=123.2
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|+++|++|+|++ +++++|+||+|+|||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++||
T Consensus 1 l~~~~l~~~~~~-~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~~ 77 (232)
T cd03300 1 IELENVSKFYGG-FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNTV 77 (232)
T ss_pred CEEEeEEEEeCC-eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEEE
Confidence 579999999974 579999999999999999999999999999999999999999999999999987664 36789999
Q ss_pred ccCCCcccc-cHHHHHhcCCC------CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh
Q 007122 539 PQDTVLFND-TIFHNIRYGRL------SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (617)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~------~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll 611 (617)
+|++.+|.+ |++||+.++.. ...++++.++++..++.+++...| ..||||||||++||||++
T Consensus 78 ~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~laral~ 146 (232)
T cd03300 78 FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARALV 146 (232)
T ss_pred ecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHHh
Confidence 999999965 99999986421 112345566666667766655544 589999999999999999
Q ss_pred CCCCCC
Q 007122 612 KAPPIL 617 (617)
Q Consensus 612 ~~p~IL 617 (617)
++|++|
T Consensus 147 ~~p~ll 152 (232)
T cd03300 147 NEPKVL 152 (232)
T ss_pred cCCCEE
Confidence 999985
No 196
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.1e-29 Score=257.25 Aligned_cols=152 Identities=35% Similarity=0.528 Sum_probs=122.9
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC--C---CCCeEEECCEeCCCC--CHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD--T---HSGSIRIDGQDICEV--TLES 530 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~--p---~~G~I~idG~~i~~~--~~~~ 530 (617)
.|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++... +...
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 5 ILQVSDLSVYYN-KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred eEEEEeeEEEEC-CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 589999999997 4579999999999999999999999999999999999954 6 499999999998643 3456
Q ss_pred HhcceEEEccCCCcccccHHHHHhcCCC--CC-C----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA-T----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 531 lr~~i~~V~Qd~~LF~gTIreNI~~g~~--~~-~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
+|++++||||++.+|+.|++||+.++.. .. . ++++.++++.+++.+.+ .+........||||||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14239 84 LRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV-------KDRLHDSALGLSGGQQQR 156 (252)
T ss_pred hhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhH-------HHHHhcCcccCCHHHHHH
Confidence 7889999999999999999999986521 11 1 22344445555543322 234556678899999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
++||||++++|++|
T Consensus 157 v~laral~~~p~ll 170 (252)
T PRK14239 157 VCIARVLATSPKII 170 (252)
T ss_pred HHHHHHHhcCCCEE
Confidence 99999999999975
No 197
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.3e-29 Score=258.91 Aligned_cols=149 Identities=34% Similarity=0.505 Sum_probs=124.7
Q ss_pred ceEEEeEEEeecCC-cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 007122 458 SIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~ 536 (617)
.|+++|++++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...++++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 59999999999753 47999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEccCCC--cccccHHHHHhcCCCC--CCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 007122 537 VVPQDTV--LFNDTIFHNIRYGRLS--ATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (617)
Q Consensus 537 ~V~Qd~~--LF~gTIreNI~~g~~~--~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiAR 608 (617)
||+|++. ++..|+++|+.++... ... +++.++++..++.++. .....+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERA-----------DYEPNALSGGQKQRVAIAG 155 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCCcccCCHHHHHHHHHHH
Confidence 9999984 5567899999876321 222 2344455555554433 2345689999999999999
Q ss_pred HHhCCCCCC
Q 007122 609 AFLKAPPIL 617 (617)
Q Consensus 609 All~~p~IL 617 (617)
|++.+|++|
T Consensus 156 al~~~p~ll 164 (269)
T PRK13648 156 VLALNPSVI 164 (269)
T ss_pred HHHcCCCEE
Confidence 999999985
No 198
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.96 E-value=1.5e-29 Score=256.63 Aligned_cols=147 Identities=31% Similarity=0.492 Sum_probs=123.5
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|+++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+++.++|+
T Consensus 2 l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAG-GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 78999999996 46899999999999999999999999999999999999999999999999999998888888899999
Q ss_pred ccCCC-cccccHHHHHhcCCCC----------CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 007122 539 PQDTV-LFNDTIFHNIRYGRLS----------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALA 607 (617)
Q Consensus 539 ~Qd~~-LF~gTIreNI~~g~~~----------~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiA 607 (617)
||++. .+..|++||+.++... ..++++.++++..++.+. .......||||||||++||
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la 149 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHL-----------ADRDMSTLSGGERQRVHVA 149 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCHHHHHHHHHH
Confidence 99985 5578999999876311 012234555555555433 2334568999999999999
Q ss_pred HHHhCCCCCC
Q 007122 608 RAFLKAPPIL 617 (617)
Q Consensus 608 RAll~~p~IL 617 (617)
||++.+|+++
T Consensus 150 ~al~~~p~ll 159 (256)
T TIGR03873 150 RALAQEPKLL 159 (256)
T ss_pred HHHhcCCCEE
Confidence 9999999975
No 199
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=4.9e-30 Score=252.62 Aligned_cols=146 Identities=35% Similarity=0.553 Sum_probs=121.3
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCE---eCCCCCHHHHhcc
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ---DICEVTLESLRKS 534 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~---~i~~~~~~~lr~~ 534 (617)
.|+++|++..|+ ..++++|||++|+.||.+|+.||||||||||+++|+||..|++|.|.+||. |.++.. .-.++
T Consensus 2 ~i~i~~~~~~~~-~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFG-AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRDRK 78 (345)
T ss_pred ceeehhhhhhcc-cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhhcc
Confidence 478889988886 457899999999999999999999999999999999999999999999999 555533 33457
Q ss_pred eEEEccCCCcc-cccHHHHHhcCC------CC--CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 007122 535 IGVVPQDTVLF-NDTIFHNIRYGR------LS--ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605 (617)
Q Consensus 535 i~~V~Qd~~LF-~gTIreNI~~g~------~~--~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRla 605 (617)
||+|+|+.-|| ..|++|||.||. |+ ....++.+.++.++|...-++-| .+||||||||+|
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHHH
Confidence 99999999998 789999999996 21 12344555666666665444433 679999999999
Q ss_pred HHHHHhCCCCCC
Q 007122 606 LARAFLKAPPIL 617 (617)
Q Consensus 606 iARAll~~p~IL 617 (617)
|||||...|++|
T Consensus 148 LARALA~eP~vL 159 (345)
T COG1118 148 LARALAVEPKVL 159 (345)
T ss_pred HHHHhhcCCCeE
Confidence 999999999986
No 200
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8.1e-30 Score=257.75 Aligned_cols=152 Identities=32% Similarity=0.535 Sum_probs=125.1
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC-----CCCeEEECCEeCCCC--CHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEV--TLES 530 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p-----~~G~I~idG~~i~~~--~~~~ 530 (617)
.|+++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +...
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 81 (250)
T PRK14262 3 IIEIENFSAYYG-EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81 (250)
T ss_pred eEEEEeeEEEeC-CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence 489999999996 45799999999999999999999999999999999999984 899999999998653 3456
Q ss_pred HhcceEEEccCCCcccccHHHHHhcCCC--C-C----CHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--S-A----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 531 lr~~i~~V~Qd~~LF~gTIreNI~~g~~--~-~----~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
++++++|++|++.+|..|++||+.++.. . . .++++.++++..++++.+. +.......+||||||||
T Consensus 82 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~qr 154 (250)
T PRK14262 82 YRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQQR 154 (250)
T ss_pred hhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHHHH
Confidence 7889999999999999999999987521 1 1 1233455566666544332 23456778999999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
++||||++++|++|
T Consensus 155 ~~la~al~~~p~ll 168 (250)
T PRK14262 155 LCIARALAVEPEVI 168 (250)
T ss_pred HHHHHHHhCCCCEE
Confidence 99999999999975
No 201
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.3e-29 Score=242.91 Aligned_cols=119 Identities=47% Similarity=0.716 Sum_probs=110.4
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCC--HHHHhcceE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT--LESLRKSIG 536 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~--~~~lr~~i~ 536 (617)
|+++|++++|++ +++++|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+++ ...++++++
T Consensus 1 i~~~~l~~~~~~-~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRYGQ-KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEECC-eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 578999999964 57999999999999999999999999999999999999999999999999998876 567888999
Q ss_pred EEccCCCccc-ccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCC
Q 007122 537 VVPQDTVLFN-DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (617)
Q Consensus 537 ~V~Qd~~LF~-gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~ 615 (617)
|++|++.+|. .|++||+.+. ||||||||++||||++++|+
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~~---------------------------------------lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 80 MVFQDFALFPHLTVLENIALG---------------------------------------LSGGQQQRVALARALAMDPD 120 (178)
T ss_pred EEecCCccCCCCCHHHheeec---------------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence 9999999885 5999999764 99999999999999999999
Q ss_pred CC
Q 007122 616 IL 617 (617)
Q Consensus 616 IL 617 (617)
++
T Consensus 121 ll 122 (178)
T cd03229 121 VL 122 (178)
T ss_pred EE
Confidence 75
No 202
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.96 E-value=2.4e-29 Score=254.32 Aligned_cols=152 Identities=31% Similarity=0.474 Sum_probs=121.7
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCC--------HH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT--------LE 529 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~--------~~ 529 (617)
.|+++||+++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++...+ ..
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKFH-GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 489999999997 457999999999999999999999999999999999999999999999999987542 35
Q ss_pred HHhcceEEEccCCCccc-ccHHHHHhcCC---CCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 007122 530 SLRKSIGVVPQDTVLFN-DTIFHNIRYGR---LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605 (617)
Q Consensus 530 ~lr~~i~~V~Qd~~LF~-gTIreNI~~g~---~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRla 605 (617)
.+|++++||||++.+|. .|++||+.++. .....++..+. +++.++.+ |++.........||||||||++
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv~ 154 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR-----ARELLAKV--GLAGKETSYPRRLSGGQQQRVA 154 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCcchhhCChhhCChHHHHHHH
Confidence 67889999999999885 79999997641 11222222111 22333333 3444445567899999999999
Q ss_pred HHHHHhCCCCCC
Q 007122 606 LARAFLKAPPIL 617 (617)
Q Consensus 606 iARAll~~p~IL 617 (617)
||||++.+|++|
T Consensus 155 la~al~~~p~ll 166 (250)
T PRK11264 155 IARALAMRPEVI 166 (250)
T ss_pred HHHHHhcCCCEE
Confidence 999999999975
No 203
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.4e-29 Score=241.45 Aligned_cols=116 Identities=34% Similarity=0.675 Sum_probs=108.0
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
++++|++++|++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ..+|+.++||
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 78 (173)
T cd03230 1 IEVRNLSKRYGK-KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGYL 78 (173)
T ss_pred CEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEEE
Confidence 578999999974 47999999999999999999999999999999999999999999999999998765 6778899999
Q ss_pred ccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 539 PQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
+|++.+|.+ |++||+. ||||||||++||||++++|++|
T Consensus 79 ~q~~~~~~~~tv~~~~~-----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 79 PEEPSLYENLTVRENLK-----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred ecCCccccCCcHHHHhh-----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 999999986 9999984 9999999999999999999975
No 204
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.1e-29 Score=259.58 Aligned_cols=147 Identities=25% Similarity=0.360 Sum_probs=120.6
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCC--CCCHHHHhcceE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC--EVTLESLRKSIG 536 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~--~~~~~~lr~~i~ 536 (617)
|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++. +.+...+|++++
T Consensus 2 l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 2 LATSDLWFRYQ-DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred eEEEEEEEEcC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 78999999996 457999999999999999999999999999999999999999999999999985 344567788999
Q ss_pred EEccCCC--cccccHHHHHhcCC--CCCCHH----HHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 007122 537 VVPQDTV--LFNDTIFHNIRYGR--LSATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (617)
Q Consensus 537 ~V~Qd~~--LF~gTIreNI~~g~--~~~~de----~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiAR 608 (617)
||||++. +|..|+.||+.++. ...+++ ++.++++..++.++. ......||||||||++|||
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~lar 149 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-----------HQPIQCLSHGQKKRVAIAG 149 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-----------cCCchhCCHHHHHHHHHHH
Confidence 9999985 67889999998741 122322 234455555554432 2345689999999999999
Q ss_pred HHhCCCCCC
Q 007122 609 AFLKAPPIL 617 (617)
Q Consensus 609 All~~p~IL 617 (617)
||+.+|++|
T Consensus 150 aL~~~p~ll 158 (271)
T PRK13638 150 ALVLQARYL 158 (271)
T ss_pred HHHcCCCEE
Confidence 999999985
No 205
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.6e-29 Score=255.88 Aligned_cols=153 Identities=29% Similarity=0.504 Sum_probs=124.2
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC--C---CCCeEEECCEeCCCC--CHH
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD--T---HSGSIRIDGQDICEV--TLE 529 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~--p---~~G~I~idG~~i~~~--~~~ 529 (617)
+.|+++|++|+|+ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++ | ++|+|.+||.++... +..
T Consensus 3 ~~l~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 3 NKVKLEQLNVHFG-KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred cEEEEEEEEEEeC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 4699999999997 4579999999999999999999999999999999999986 4 689999999998653 455
Q ss_pred HHhcceEEEccCCCccc-ccHHHHHhcCCC--C-CC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHH
Q 007122 530 SLRKSIGVVPQDTVLFN-DTIFHNIRYGRL--S-AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEK 601 (617)
Q Consensus 530 ~lr~~i~~V~Qd~~LF~-gTIreNI~~g~~--~-~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQr 601 (617)
.+|++++||||++.+|. .|++||+.++.. . .+ ++++.++++..++.+++.. .......+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 154 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSGGQQ 154 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCHHHH
Confidence 77889999999999998 699999986421 1 11 2334555566665443322 23456778999999
Q ss_pred HHHHHHHHHhCCCCCC
Q 007122 602 QRVALARAFLKAPPIL 617 (617)
Q Consensus 602 QRlaiARAll~~p~IL 617 (617)
||++||||++++|++|
T Consensus 155 qrl~laral~~~p~ll 170 (252)
T PRK14256 155 QRLCIARTIAVKPEVI 170 (252)
T ss_pred HHHHHHHHHhcCCCEE
Confidence 9999999999999975
No 206
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=1.8e-29 Score=247.83 Aligned_cols=145 Identities=26% Similarity=0.410 Sum_probs=122.1
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++||++.|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.. .. ++++++|
T Consensus 2 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~~ 77 (207)
T PRK13539 2 MLEGEDLACVRGG-RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACHY 77 (207)
T ss_pred EEEEEeEEEEECC-eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcEE
Confidence 3789999999974 579999999999999999999999999999999999999999999999998753 22 7889999
Q ss_pred EccCCCcc-cccHHHHHhcCCC--CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCC
Q 007122 538 VPQDTVLF-NDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (617)
Q Consensus 538 V~Qd~~LF-~gTIreNI~~g~~--~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p 614 (617)
++|++.++ +.|++||+.+... ...++++.++++..++.++.+. | ...||||||||++||||++++|
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~----------~~~LS~G~~qrl~la~al~~~p 146 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHL-P----------FGYLSAGQKRRVALARLLVSNR 146 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcC-C----------hhhcCHHHHHHHHHHHHHhcCC
Confidence 99888765 6899999976431 2345667788888888664322 2 2479999999999999999999
Q ss_pred CCC
Q 007122 615 PIL 617 (617)
Q Consensus 615 ~IL 617 (617)
++|
T Consensus 147 ~ll 149 (207)
T PRK13539 147 PIW 149 (207)
T ss_pred CEE
Confidence 975
No 207
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2e-29 Score=261.73 Aligned_cols=153 Identities=36% Similarity=0.549 Sum_probs=126.5
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC-----CCCCeEEECCEeCCCC--CHH
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICEV--TLE 529 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~-----p~~G~I~idG~~i~~~--~~~ 529 (617)
..|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.+. +..
T Consensus 44 ~~l~i~nl~~~~~~-~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~ 122 (305)
T PRK14264 44 AKLSVEDLDVYYGD-DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLV 122 (305)
T ss_pred ceEEEEEEEEEeCC-eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHH
Confidence 36999999999974 579999999999999999999999999999999999986 6899999999998653 456
Q ss_pred HHhcceEEEccCCCcccccHHHHHhcCCCC-------------------CCHHHHHHHHHHHcHHHHHHhCCCCcccccc
Q 007122 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRLS-------------------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVG 590 (617)
Q Consensus 530 ~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~-------------------~~de~i~~a~~~a~l~~~I~~lp~GldT~vg 590 (617)
.+|+.++||+|++.+|+.|++||+.++... ..++++.++++.+++ ++++++.+.
T Consensus 123 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~ 195 (305)
T PRK14264 123 ELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAAL-------WDEVNDRLD 195 (305)
T ss_pred HHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCC-------chhhhHHhc
Confidence 788899999999999999999999875210 012234444444443 334455667
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 591 ERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 591 e~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
....+||||||||++|||||+++|+||
T Consensus 196 ~~~~~LSgGq~qrv~LAraL~~~p~lL 222 (305)
T PRK14264 196 DNALGLSGGQQQRLCIARCLAVDPEVI 222 (305)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCEE
Confidence 778899999999999999999999985
No 208
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1e-29 Score=257.00 Aligned_cols=152 Identities=36% Similarity=0.596 Sum_probs=123.1
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcC---CCC--CCCeEEECCEeCCCC--CHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS---FDT--HSGSIRIDGQDICEV--TLES 530 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl---~~p--~~G~I~idG~~i~~~--~~~~ 530 (617)
.|+++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+ ++| ++|+|.+||.++.+. +...
T Consensus 3 ~l~~~~~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 3 KIDARDVNFWYGD-FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred EEEEEEEEEEECC-EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 5899999999964 5799999999999999999999999999999999997 454 589999999998754 3467
Q ss_pred HhcceEEEccCCCcccccHHHHHhcCCC--CC-----CHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA-----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 531 lr~~i~~V~Qd~~LF~gTIreNI~~g~~--~~-----~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
++++++||||++.+|..|++||+.++.. .. .++++.++++..++.+++ ++...+....||||||||
T Consensus 82 ~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 82 LRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV-------KDKLKESAFALSGGQQQR 154 (250)
T ss_pred HhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch-------hhhhhCCcccCCHHHHHH
Confidence 7889999999999999999999986521 11 122344445544443332 234556778999999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
++||||++++|++|
T Consensus 155 v~laral~~~p~ll 168 (250)
T PRK14245 155 LCIARAMAVSPSVL 168 (250)
T ss_pred HHHHHHHhcCCCEE
Confidence 99999999999985
No 209
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=6e-30 Score=258.83 Aligned_cols=151 Identities=30% Similarity=0.492 Sum_probs=122.4
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC-----CCCCeEEECCEeCCCCC--HHHH
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICEVT--LESL 531 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~-----p~~G~I~idG~~i~~~~--~~~l 531 (617)
=+++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.+.+ ...+
T Consensus 6 ~~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 6 ASVKNLNLWYG-SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred EEeeeEEEEEC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence 47899999996 4689999999999999999999999999999999999986 47999999999987653 3457
Q ss_pred hcceEEEccCCCcccccHHHHHhcCCC--CC------CHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 532 RKSIGVVPQDTVLFNDTIFHNIRYGRL--SA------TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 532 r~~i~~V~Qd~~LF~gTIreNI~~g~~--~~------~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
|++++||||++.+|.+|++||+.++.. +. .++++.++++..++.+++ .+.+...+.+||||||||
T Consensus 85 ~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~qr 157 (251)
T PRK14244 85 RAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQQR 157 (251)
T ss_pred hhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHHHH
Confidence 889999999999999999999987521 11 123344555555554322 234456678899999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
++||||++++|++|
T Consensus 158 v~laral~~~p~ll 171 (251)
T PRK14244 158 LCIARAIAVKPTML 171 (251)
T ss_pred HHHHHHHhcCCCEE
Confidence 99999999999985
No 210
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.96 E-value=1.3e-29 Score=239.74 Aligned_cols=113 Identities=32% Similarity=0.489 Sum_probs=104.8
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|+++|++++|++++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++++|+
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~ 69 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLFL 69 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEEE
Confidence 578999999975568999999999999999999999999999999999999999999999873 589999
Q ss_pred ccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 539 PQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 539 ~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
+|++.++++|++|||.++ ....||||||||++||||++++|++|
T Consensus 70 ~q~~~~~~~tv~~nl~~~-----------------------------------~~~~LS~G~~~rv~laral~~~p~~l 113 (166)
T cd03223 70 PQRPYLPLGTLREQLIYP-----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFV 113 (166)
T ss_pred CCCCccccccHHHHhhcc-----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999999999999864 34789999999999999999999975
No 211
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.8e-29 Score=256.50 Aligned_cols=152 Identities=29% Similarity=0.495 Sum_probs=123.3
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC-----CCCCeEEECCEeCCC--CCHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLES 530 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~-----p~~G~I~idG~~i~~--~~~~~ 530 (617)
.|+++|++|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.. .+...
T Consensus 24 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 102 (271)
T PRK14238 24 VFDTQNLNLWYG-EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEE 102 (271)
T ss_pred EEEEeeeEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHH
Confidence 699999999997 3579999999999999999999999999999999999987 699999999999853 45567
Q ss_pred HhcceEEEccCCCcccccHHHHHhcCCC--CCCHH-H----HHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--SATEE-E----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 531 lr~~i~~V~Qd~~LF~gTIreNI~~g~~--~~~de-~----i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
++++++|+||++.+|..|++||+.++.. +.+++ . +.++++..++. +++..........||||||||
T Consensus 103 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~l~~~~~~~~~~LSgGe~qr 175 (271)
T PRK14238 103 LRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIW-------DELKDRLHDNAYGLSGGQQQR 175 (271)
T ss_pred HhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCc-------chHHHHHhcCcccCCHHHHHH
Confidence 8889999999999999999999986521 22221 1 22233333222 233344566788999999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
++|||||+++|++|
T Consensus 176 v~laraL~~~p~ll 189 (271)
T PRK14238 176 LCIARCLAIEPDVI 189 (271)
T ss_pred HHHHHHHHcCCCEE
Confidence 99999999999975
No 212
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.96 E-value=1.8e-29 Score=256.14 Aligned_cols=150 Identities=34% Similarity=0.500 Sum_probs=121.3
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCC----------
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV---------- 526 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~---------- 526 (617)
+.|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 4 NKLNVIDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred ccEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence 4799999999997 46799999999999999999999999999999999999999999999999988642
Q ss_pred ---CHHHHhcceEEEccCCCccc-ccHHHHHhcCC---CCCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCC
Q 007122 527 ---TLESLRKSIGVVPQDTVLFN-DTIFHNIRYGR---LSATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLK 595 (617)
Q Consensus 527 ---~~~~lr~~i~~V~Qd~~LF~-gTIreNI~~g~---~~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~ 595 (617)
....++++++||||++.+|. .|++||+.++. ..... +++.++++..++.+.. .......
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~ 152 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKYPVH 152 (257)
T ss_pred cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCCccc
Confidence 13567889999999999997 59999997642 11222 2333444444443321 1455678
Q ss_pred CChHHHHHHHHHHHHhCCCCCC
Q 007122 596 LSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 596 LSGGQrQRlaiARAll~~p~IL 617 (617)
||||||||++|||||+++|++|
T Consensus 153 LS~G~~qrv~laral~~~p~ll 174 (257)
T PRK10619 153 LSGGQQQRVSIARALAMEPEVL 174 (257)
T ss_pred CCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999999975
No 213
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.7e-29 Score=251.05 Aligned_cols=143 Identities=35% Similarity=0.575 Sum_probs=122.3
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|+++||+++|++ .+ .|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+.. ++.++||
T Consensus 2 l~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~~~ 76 (232)
T PRK10771 2 LKLTDITWLYHH-LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVSML 76 (232)
T ss_pred eEEEEEEEEECC-cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEEEE
Confidence 789999999973 33 399999999999999999999999999999999999999999999998876543 5689999
Q ss_pred ccCCCcccc-cHHHHHhcCC-CC-----CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh
Q 007122 539 PQDTVLFND-TIFHNIRYGR-LS-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (617)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~-~~-----~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll 611 (617)
||++.+|.+ |++|||.++. +. ..++++.++++..++.+.+++.| ..||||||||++||||++
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCLV 145 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHHh
Confidence 999999985 9999998752 11 12455777888888877776655 379999999999999999
Q ss_pred CCCCCC
Q 007122 612 KAPPIL 617 (617)
Q Consensus 612 ~~p~IL 617 (617)
++|++|
T Consensus 146 ~~p~ll 151 (232)
T PRK10771 146 REQPIL 151 (232)
T ss_pred cCCCEE
Confidence 999975
No 214
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.4e-29 Score=257.07 Aligned_cols=152 Identities=37% Similarity=0.581 Sum_probs=123.2
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC-----CCCeEEECCEeCCCC--CHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEV--TLES 530 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p-----~~G~I~idG~~i~~~--~~~~ 530 (617)
.|+++|++++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.+. +...
T Consensus 12 ~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 90 (258)
T PRK14268 12 QIKVENLNLWYG-EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVE 90 (258)
T ss_pred eEEEeeeEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHH
Confidence 699999999996 45799999999999999999999999999999999999985 799999999998653 3456
Q ss_pred HhcceEEEccCCCcccccHHHHHhcCCC--CCCHH----HHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 007122 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--SATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (617)
Q Consensus 531 lr~~i~~V~Qd~~LF~gTIreNI~~g~~--~~~de----~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRl 604 (617)
+|++++||+|++.+|+.|++||+.++.. ..+.+ ++.++++.+++.+++ +.........||||||||+
T Consensus 91 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~qrv 163 (258)
T PRK14268 91 LRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQQRL 163 (258)
T ss_pred HhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHHHHH
Confidence 7889999999999999999999987521 12222 244455555443221 2233456678999999999
Q ss_pred HHHHHHhCCCCCC
Q 007122 605 ALARAFLKAPPIL 617 (617)
Q Consensus 605 aiARAll~~p~IL 617 (617)
+|||||+.+|++|
T Consensus 164 ~laral~~~p~ll 176 (258)
T PRK14268 164 CIARTLAVKPKII 176 (258)
T ss_pred HHHHHHHcCCCEE
Confidence 9999999999975
No 215
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.9e-29 Score=258.90 Aligned_cols=155 Identities=31% Similarity=0.487 Sum_probs=121.6
Q ss_pred cceEEEeEEEeecCC----cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCC----C-C
Q 007122 457 GSIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE----V-T 527 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~----~-~ 527 (617)
+.|+++|++++|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+ . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 479999999999743 259999999999999999999999999999999999999999999999999853 2 3
Q ss_pred HHHHhcceEEEccCC--CcccccHHHHHhcCCC--CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 528 LESLRKSIGVVPQDT--VLFNDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 528 ~~~lr~~i~~V~Qd~--~LF~gTIreNI~~g~~--~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
...+|++++||+|++ .+|..|++|||.++.. ....++..+.+. .+.+.+ .+|.+ ........||||||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~--~ll~~~-~L~~~---~~~~~~~~LS~Gq~qr 158 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVP--ELLKLV-QLPED---YVKRSPFELSGGQKRR 158 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHc-CCChh---HhcCChhhCCHHHHHH
Confidence 567888999999998 5788899999987532 223333222221 111211 23322 2345667899999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
++|||||+.+|++|
T Consensus 159 v~laral~~~p~lL 172 (289)
T PRK13645 159 VALAGIIAMDGNTL 172 (289)
T ss_pred HHHHHHHHhCCCEE
Confidence 99999999999975
No 216
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.96 E-value=1.7e-29 Score=254.21 Aligned_cols=157 Identities=21% Similarity=0.379 Sum_probs=123.5
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHH-hcceE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~l-r~~i~ 536 (617)
-|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.... ++.++
T Consensus 2 ~i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 2 ILYLEGLSVSFDG-FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred eEEEEeeEEEcCC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 4899999999974 579999999999999999999999999999999999999999999999999988776654 55799
Q ss_pred EEccCCCcccc-cHHHHHhcCCCCCCH--HHH---HHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 007122 537 VVPQDTVLFND-TIFHNIRYGRLSATE--EEV---YDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (617)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~~~~d--e~i---~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAl 610 (617)
|++|++.+|.+ |++||+.++...... ..+ ........+++.++.+ |++.........||||||||++||||+
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999999986 999999875321000 000 0001111233444443 444445566778999999999999999
Q ss_pred hCCCCCC
Q 007122 611 LKAPPIL 617 (617)
Q Consensus 611 l~~p~IL 617 (617)
+++|++|
T Consensus 159 ~~~p~~l 165 (242)
T TIGR03411 159 MQDPKLL 165 (242)
T ss_pred hcCCCEE
Confidence 9999975
No 217
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.5e-29 Score=269.36 Aligned_cols=134 Identities=37% Similarity=0.560 Sum_probs=113.4
Q ss_pred ccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHH----hcceEEEccCCCccc-c
Q 007122 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL----RKSIGVVPQDTVLFN-D 547 (617)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~l----r~~i~~V~Qd~~LF~-g 547 (617)
.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++...+ +++++||+|++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999998887654 468999999999996 5
Q ss_pred cHHHHHhcCCC--CCC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 548 TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 548 TIreNI~~g~~--~~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
|++|||.++.. ..+ ++++.++++..++.++..+.| .+||||||||++|||||+.+|++|
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iL 186 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDIL 186 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999987521 112 244556667777766555444 589999999999999999999985
No 218
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.6e-29 Score=255.46 Aligned_cols=152 Identities=32% Similarity=0.559 Sum_probs=125.0
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC-----CCCeEEECCEeCC-CCCHHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDIC-EVTLESL 531 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p-----~~G~I~idG~~i~-~~~~~~l 531 (617)
.|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++. ..+...+
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 3 KFNIENLDLFYG-ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred eEEEeccEEEEC-CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 589999999997 46799999999999999999999999999999999999986 5999999999985 4566788
Q ss_pred hcceEEEccCCCcccccHHHHHhcCCC--CCC-H----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 007122 532 RKSIGVVPQDTVLFNDTIFHNIRYGRL--SAT-E----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (617)
Q Consensus 532 r~~i~~V~Qd~~LF~gTIreNI~~g~~--~~~-d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRl 604 (617)
|+.++||||++.+|..|++||+.++.. ... + +++.++++.+++.+.+ .+.+......||||||||+
T Consensus 82 ~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~qrv 154 (249)
T PRK14253 82 RIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV-------KDRLKSHAFGLSGGQQQRL 154 (249)
T ss_pred HhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh-------hHHhhcCcccCCHHHHHHH
Confidence 889999999999999999999987531 111 1 2334445555554333 2344556778999999999
Q ss_pred HHHHHHhCCCCCC
Q 007122 605 ALARAFLKAPPIL 617 (617)
Q Consensus 605 aiARAll~~p~IL 617 (617)
+||||++.+|++|
T Consensus 155 ~laral~~~p~ll 167 (249)
T PRK14253 155 CIARTIAMEPDVI 167 (249)
T ss_pred HHHHHHHcCCCEE
Confidence 9999999999975
No 219
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.4e-29 Score=256.44 Aligned_cols=154 Identities=33% Similarity=0.506 Sum_probs=127.1
Q ss_pred CcceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC-----CCCeEEECCEeCC----CC
Q 007122 456 GGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDIC----EV 526 (617)
Q Consensus 456 ~~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p-----~~G~I~idG~~i~----~~ 526 (617)
.+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.+||.++. +.
T Consensus 14 ~~~l~~~~l~~~~~~-~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~ 92 (265)
T PRK14252 14 QQKSEVNKLNFYYGG-YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92 (265)
T ss_pred CceEEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence 357999999999974 5799999999999999999999999999999999999975 7999999998874 33
Q ss_pred CHHHHhcceEEEccCCCcccccHHHHHhcCCC--C-----CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChH
Q 007122 527 TLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL--S-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGG 599 (617)
Q Consensus 527 ~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~--~-----~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGG 599 (617)
+...+++.++|++|++.+|.+|++|||.++.. . ..++++.++++.+++.+ ++.+.+......||||
T Consensus 93 ~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G 165 (265)
T PRK14252 93 DPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-------EVKDRLGDLAFNLSGG 165 (265)
T ss_pred CHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-------hhhHHHhCCcccCCHH
Confidence 45678889999999999999999999987521 1 11345556666665543 2334456677899999
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 007122 600 EKQRVALARAFLKAPPIL 617 (617)
Q Consensus 600 QrQRlaiARAll~~p~IL 617 (617)
||||++||||++++|++|
T Consensus 166 ~~qrv~laral~~~p~ll 183 (265)
T PRK14252 166 QQQRLCIARALATDPEIL 183 (265)
T ss_pred HHHHHHHHHHHHcCCCEE
Confidence 999999999999999975
No 220
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2e-29 Score=256.09 Aligned_cols=152 Identities=30% Similarity=0.462 Sum_probs=123.2
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC-----CCCeEEECCEeCCC--CCHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICE--VTLES 530 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p-----~~G~I~idG~~i~~--~~~~~ 530 (617)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.. .+...
T Consensus 4 ~l~i~~v~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 4 RIDVKDLNIYYGS-FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred cEEEeeEEEEECC-EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 5899999999974 5799999999999999999999999999999999999974 69999999999853 45667
Q ss_pred HhcceEEEccCCCccc-ccHHHHHhcCCC--C-CC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 007122 531 LRKSIGVVPQDTVLFN-DTIFHNIRYGRL--S-AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQ 602 (617)
Q Consensus 531 lr~~i~~V~Qd~~LF~-gTIreNI~~g~~--~-~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQ 602 (617)
+|+.++||+|++.+|. .|++||+.++.. . .+ ++.+.++++..++.+.+ .........+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~q 155 (258)
T PRK14241 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-------KDRLDKPGGGLSGGQQQ 155 (258)
T ss_pred HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHHHH
Confidence 8889999999999997 599999986421 1 11 22344455555554332 22345566789999999
Q ss_pred HHHHHHHHhCCCCCC
Q 007122 603 RVALARAFLKAPPIL 617 (617)
Q Consensus 603 RlaiARAll~~p~IL 617 (617)
|++||||++++|++|
T Consensus 156 rv~laral~~~p~ll 170 (258)
T PRK14241 156 RLCIARAIAVEPDVL 170 (258)
T ss_pred HHHHHHHHhcCCCEE
Confidence 999999999999975
No 221
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.96 E-value=2.9e-29 Score=251.57 Aligned_cols=145 Identities=37% Similarity=0.509 Sum_probs=119.7
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|+++|++|+|++ +++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++||
T Consensus 1 i~i~~l~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~~ 77 (237)
T TIGR00968 1 IEIANISKRFGS-FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGFV 77 (237)
T ss_pred CEEEEEEEEECC-eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEEE
Confidence 579999999974 579999999999999999999999999999999999999999999999999987653 46789999
Q ss_pred ccCCCcccc-cHHHHHhcCCCC--CC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh
Q 007122 539 PQDTVLFND-TIFHNIRYGRLS--AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (617)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~~--~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll 611 (617)
||++.+|.+ |++||+.++.+. .+ ++++.++++..++.++.+ ....+|||||+||++||||++
T Consensus 78 ~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrl~laral~ 146 (237)
T TIGR00968 78 FQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGD-----------RYPNQLSGGQRQRVALARALA 146 (237)
T ss_pred ecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHHHHHHHHHHh
Confidence 999999975 999999875421 11 223444444444443333 334689999999999999999
Q ss_pred CCCCCC
Q 007122 612 KAPPIL 617 (617)
Q Consensus 612 ~~p~IL 617 (617)
++|+++
T Consensus 147 ~~p~ll 152 (237)
T TIGR00968 147 VEPQVL 152 (237)
T ss_pred cCCCEE
Confidence 999975
No 222
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.9e-29 Score=257.52 Aligned_cols=153 Identities=34% Similarity=0.548 Sum_probs=121.0
Q ss_pred ceEEEeEEEeecCC----cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCC----CHH
Q 007122 458 SIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV----TLE 529 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~----~~~ 529 (617)
.|+++|++++|++. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 37899999999742 4799999999999999999999999999999999999999999999999998653 345
Q ss_pred HHhcceEEEccCC--CcccccHHHHHhcCCC--CCCHHHHHHHHHHHcHHHHHHhCCCCccc-cccCCCCCCChHHHHHH
Q 007122 530 SLRKSIGVVPQDT--VLFNDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYST-VVGERGLKLSGGEKQRV 604 (617)
Q Consensus 530 ~lr~~i~~V~Qd~--~LF~gTIreNI~~g~~--~~~de~i~~a~~~a~l~~~I~~lp~GldT-~vge~G~~LSGGQrQRl 604 (617)
..++.++||+|+| .+|..|++|||.++.. ..+.++..+. +.+.++.+ |+++ ........||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl 154 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEK-----ALKWLKKV--GLSEDLISKSPFELSGGQMRRV 154 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhHhhCCcccCCHHHHHHH
Confidence 6788999999998 5888999999987531 2233322111 12223332 3432 23445678999999999
Q ss_pred HHHHHHhCCCCCC
Q 007122 605 ALARAFLKAPPIL 617 (617)
Q Consensus 605 aiARAll~~p~IL 617 (617)
+|||||+.+|++|
T Consensus 155 ~laral~~~p~lL 167 (287)
T PRK13641 155 AIAGVMAYEPEIL 167 (287)
T ss_pred HHHHHHHcCCCEE
Confidence 9999999999985
No 223
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.8e-29 Score=255.91 Aligned_cols=154 Identities=33% Similarity=0.504 Sum_probs=126.4
Q ss_pred CcceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC-----CCCeEEECCEeCCC--CCH
Q 007122 456 GGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICE--VTL 528 (617)
Q Consensus 456 ~~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p-----~~G~I~idG~~i~~--~~~ 528 (617)
...|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.+ .+.
T Consensus 18 ~~~l~~~nl~~~~~~-~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 18 HSVFEVEGVKVFYGG-FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred CceEEEeeEEEEeCC-eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 347999999999974 5799999999999999999999999999999999999864 69999999999864 344
Q ss_pred HHHhcceEEEccCCCcccccHHHHHhcCCCC-----CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 529 ESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 529 ~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~-----~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
..+|++++||||++.+|+.|+.|||.++... ..++++.++++.+++.+.+.. ........||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHHHH
Confidence 5678899999999999999999999875311 123345556666666544432 2345667899999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
++|||||+++|++|
T Consensus 170 v~LAraL~~~p~ll 183 (274)
T PRK14265 170 LCIARAIAMKPDVL 183 (274)
T ss_pred HHHHHHHhhCCCEE
Confidence 99999999999985
No 224
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.96 E-value=2.5e-29 Score=262.91 Aligned_cols=150 Identities=24% Similarity=0.381 Sum_probs=121.1
Q ss_pred ceEEEeEEEeecC------------CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCC
Q 007122 458 SIQFDNVHFSYLT------------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE 525 (617)
Q Consensus 458 ~I~~~nvsF~Y~~------------~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~ 525 (617)
-|+++|++++|+. ..++++|+||+|++||++||||+||||||||+++|+|+++|++|+|.+||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 5899999999963 1469999999999999999999999999999999999999999999999999999
Q ss_pred CCHHH---HhcceEEEccCC--Ccc-cccHHHHHhcC----CCCCCHHHH----HHHHHHHcHHHHHHhCCCCccccccC
Q 007122 526 VTLES---LRKSIGVVPQDT--VLF-NDTIFHNIRYG----RLSATEEEV----YDAARRAAIHDTIMNFPAKYSTVVGE 591 (617)
Q Consensus 526 ~~~~~---lr~~i~~V~Qd~--~LF-~gTIreNI~~g----~~~~~de~i----~~a~~~a~l~~~I~~lp~GldT~vge 591 (617)
++.++ +|++|+||+|+| .+| ..||.|||.++ .+..+.++. .++++.+++.+ .....
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~----------~~~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP----------NLINR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh----------HHhcC
Confidence 87654 678999999998 477 58999999653 112344433 33344444311 12334
Q ss_pred CCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 592 RGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 592 ~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
....||||||||++|||||+.+|++|
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~ll 183 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLI 183 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 55689999999999999999999975
No 225
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.6e-29 Score=254.23 Aligned_cols=152 Identities=32% Similarity=0.523 Sum_probs=124.7
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC-----CCCeEEECCEeCCCC--CHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEV--TLES 530 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p-----~~G~I~idG~~i~~~--~~~~ 530 (617)
.|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +...
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (251)
T PRK14270 4 KMESKNLNLWYG-EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE 82 (251)
T ss_pred EEEEEEeEEEEC-CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHH
Confidence 589999999996 46799999999999999999999999999999999999985 799999999998653 3456
Q ss_pred HhcceEEEccCCCcccccHHHHHhcCCC--CC-C----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA-T----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 531 lr~~i~~V~Qd~~LF~gTIreNI~~g~~--~~-~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
+++.++||||++.+|+.|++||+.++.. .. + ++++.++++.+++.+.+. .........||||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~qr 155 (251)
T PRK14270 83 LRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK-------DDLKKSALKLSGGQQQR 155 (251)
T ss_pred HHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHHHHH
Confidence 7889999999999999999999987521 11 1 233445566665543332 23445677899999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
++||||++++|+||
T Consensus 156 v~laral~~~p~ll 169 (251)
T PRK14270 156 LCIARTIAVKPDVI 169 (251)
T ss_pred HHHHHHHhcCCCEE
Confidence 99999999999975
No 226
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.6e-29 Score=254.36 Aligned_cols=142 Identities=26% Similarity=0.444 Sum_probs=116.6
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|+++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++... +..++|+
T Consensus 2 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~v 75 (255)
T PRK11248 2 LQISHLYADYGG-KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGVV 75 (255)
T ss_pred EEEEEEEEEeCC-eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEEE
Confidence 789999999964 6799999999999999999999999999999999999999999999999998643 2468999
Q ss_pred ccCCCccc-ccHHHHHhcCCC--CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh
Q 007122 539 PQDTVLFN-DTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (617)
Q Consensus 539 ~Qd~~LF~-gTIreNI~~g~~--~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll 611 (617)
+|++.+|. .|++||+.++.. ..+. +++.++++..++.+. ......+||||||||++|||||+
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq~qrl~laral~ 144 (255)
T PRK11248 76 FQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGA-----------EKRYIWQLSGGQRQRVGIARALA 144 (255)
T ss_pred eCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------hhCChhhCCHHHHHHHHHHHHHh
Confidence 99999987 699999987521 1222 234444444444333 33456789999999999999999
Q ss_pred CCCCCC
Q 007122 612 KAPPIL 617 (617)
Q Consensus 612 ~~p~IL 617 (617)
++|++|
T Consensus 145 ~~p~ll 150 (255)
T PRK11248 145 ANPQLL 150 (255)
T ss_pred cCCCEE
Confidence 999975
No 227
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.3e-29 Score=245.94 Aligned_cols=131 Identities=28% Similarity=0.409 Sum_probs=114.0
Q ss_pred ceEEEeEEEeecC---CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC---CCCCeEEECCEeCCCCCHHHH
Q 007122 458 SIQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD---THSGSIRIDGQDICEVTLESL 531 (617)
Q Consensus 458 ~I~~~nvsF~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~---p~~G~I~idG~~i~~~~~~~l 531 (617)
.+.++||+|.|+. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 4789999999983 4589999999999999999999999999999999999999 89999999999998765 456
Q ss_pred hcceEEEccCCCccc-ccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 007122 532 RKSIGVVPQDTVLFN-DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (617)
Q Consensus 532 r~~i~~V~Qd~~LF~-gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAl 610 (617)
+++++|++|++.+|. .|++|||.++.. . . ..+....||||||||++||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~------~----~------------------~~~~~~~LS~Ge~qrl~laral 133 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALR------C----K------------------GNEFVRGISGGERKRVSIAEAL 133 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhh------h----c------------------cccchhhCCHHHHHHHHHHHHH
Confidence 788999999998886 599999987521 0 0 2234468999999999999999
Q ss_pred hCCCCCC
Q 007122 611 LKAPPIL 617 (617)
Q Consensus 611 l~~p~IL 617 (617)
+++|++|
T Consensus 134 ~~~p~ll 140 (202)
T cd03233 134 VSRASVL 140 (202)
T ss_pred hhCCCEE
Confidence 9999975
No 228
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.96 E-value=2.6e-29 Score=256.16 Aligned_cols=149 Identities=26% Similarity=0.406 Sum_probs=119.7
Q ss_pred ceEEEeEEEeecC--------CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHH
Q 007122 458 SIQFDNVHFSYLT--------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE 529 (617)
Q Consensus 458 ~I~~~nvsF~Y~~--------~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~ 529 (617)
.|+++||+|+|++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 3889999999963 35799999999999999999999999999999999999999999999999999887754
Q ss_pred H---HhcceEEEccCCC--cc-cccHHHHHhcCCC---CCC----HHHHHHHHHHHcHHHHHHhCCCCcc-ccccCCCCC
Q 007122 530 S---LRKSIGVVPQDTV--LF-NDTIFHNIRYGRL---SAT----EEEVYDAARRAAIHDTIMNFPAKYS-TVVGERGLK 595 (617)
Q Consensus 530 ~---lr~~i~~V~Qd~~--LF-~gTIreNI~~g~~---~~~----de~i~~a~~~a~l~~~I~~lp~Gld-T~vge~G~~ 595 (617)
. +|++++||||++. ++ ..|++|||.++.. ... ++++.++++..+ ++ .........
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~~ 150 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVG-----------LRSEDADKLPRQ 150 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------CChhhhhCChhh
Confidence 3 6788999999983 44 4799999965311 111 123333333333 33 233456678
Q ss_pred CChHHHHHHHHHHHHhCCCCCC
Q 007122 596 LSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 596 LSGGQrQRlaiARAll~~p~IL 617 (617)
||||||||++||||++.+|++|
T Consensus 151 LSgGe~qrv~laral~~~p~il 172 (265)
T TIGR02769 151 LSGGQLQRINIARALAVKPKLI 172 (265)
T ss_pred CCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999999975
No 229
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=3.6e-29 Score=250.53 Aligned_cols=144 Identities=35% Similarity=0.547 Sum_probs=121.4
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|+++|++++|++ ++|+|+||+|+|||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+. .++.++||
T Consensus 1 l~~~~l~~~~~~--~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~~ 76 (235)
T cd03299 1 LKVENLSKDWKE--FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISYV 76 (235)
T ss_pred CeeEeEEEEeCC--ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEEE
Confidence 578999999974 38999999999999999999999999999999999999999999999999987654 36789999
Q ss_pred ccCCCccc-ccHHHHHhcCCCC--C----CHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh
Q 007122 539 PQDTVLFN-DTIFHNIRYGRLS--A----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (617)
Q Consensus 539 ~Qd~~LF~-gTIreNI~~g~~~--~----~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll 611 (617)
+|++.+|. .|++||+.++... . .++++.++++..++.+++.+.| ..||||||||++||||++
T Consensus 77 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral~ 145 (235)
T cd03299 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARALV 145 (235)
T ss_pred eecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHHHH
Confidence 99999995 7999999865321 1 2234556667677766555433 579999999999999999
Q ss_pred CCCCCC
Q 007122 612 KAPPIL 617 (617)
Q Consensus 612 ~~p~IL 617 (617)
++|++|
T Consensus 146 ~~p~ll 151 (235)
T cd03299 146 VNPKIL 151 (235)
T ss_pred cCCCEE
Confidence 999975
No 230
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=3.3e-29 Score=238.36 Aligned_cols=117 Identities=57% Similarity=0.918 Sum_probs=110.9
Q ss_pred eEEEeEEEeecCC-cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 459 IQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 459 I~~~nvsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
|+++|++++|++. .++++|+||+|++|+.++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...++++++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 5789999999754 379999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 538 VPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 538 V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
++|++.+|+.|+.||+ ||||||||++||||++.+|++|
T Consensus 81 ~~~~~~~~~~t~~e~l------------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 81 VPQDPFLFSGTIRENI------------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred EcCCchhccchHHHHh------------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999998 9999999999999999999975
No 231
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.96 E-value=3.1e-29 Score=260.30 Aligned_cols=151 Identities=28% Similarity=0.418 Sum_probs=119.1
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++||+++|+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+. ...+|++++|
T Consensus 4 ~i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~ 81 (303)
T TIGR01288 4 AIDLVGVSKSYG-DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIGV 81 (303)
T ss_pred EEEEEeEEEEeC-CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEEE
Confidence 589999999996 35799999999999999999999999999999999999999999999999998754 3567889999
Q ss_pred EccCCCccc-ccHHHHHhcCC--CCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCC
Q 007122 538 VPQDTVLFN-DTIFHNIRYGR--LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (617)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~--~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p 614 (617)
|||++.+|. .|++||+.+.. ...+.++..+.++. +.+.+ .+++..++. ...||||||||++|||||+++|
T Consensus 82 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--ll~~~-~l~~~~~~~----~~~LSgG~~qrv~la~al~~~p 154 (303)
T TIGR01288 82 VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPS--LLEFA-RLESKADVR----VALLSGGMKRRLTLARALINDP 154 (303)
T ss_pred EeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHH--HHHHC-CChhHhcCc----hhhCCHHHHHHHHHHHHHhcCC
Confidence 999999884 69999997431 12333333222211 11111 233334444 3579999999999999999999
Q ss_pred CCC
Q 007122 615 PIL 617 (617)
Q Consensus 615 ~IL 617 (617)
++|
T Consensus 155 ~ll 157 (303)
T TIGR01288 155 QLL 157 (303)
T ss_pred CEE
Confidence 975
No 232
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.5e-29 Score=254.59 Aligned_cols=152 Identities=36% Similarity=0.581 Sum_probs=125.6
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCC-----CCeEEECCEeCCC--CCHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-----SGSIRIDGQDICE--VTLES 530 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~-----~G~I~idG~~i~~--~~~~~ 530 (617)
.|+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.+ .+...
T Consensus 7 ~l~~~nl~~~~~~-~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~ 85 (261)
T PRK14258 7 AIKVNNLSFYYDT-QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNR 85 (261)
T ss_pred eEEEeeEEEEeCC-eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHH
Confidence 6999999999963 47999999999999999999999999999999999999985 8999999999853 34567
Q ss_pred HhcceEEEccCCCcccccHHHHHhcCC------CCCC-HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 531 LRKSIGVVPQDTVLFNDTIFHNIRYGR------LSAT-EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 531 lr~~i~~V~Qd~~LF~gTIreNI~~g~------~~~~-de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
+|+.++|++|++.+|..|++||+.++. +... ++.+.++++..++.+++.. ........||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~qr 158 (261)
T PRK14258 86 LRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQQQR 158 (261)
T ss_pred hhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHHHH
Confidence 888999999999999999999998642 1111 2334556666666544432 3456678999999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
++||||++++|++|
T Consensus 159 v~laral~~~p~vl 172 (261)
T PRK14258 159 LCIARALAVKPKVL 172 (261)
T ss_pred HHHHHHHhcCCCEE
Confidence 99999999999975
No 233
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.4e-29 Score=253.51 Aligned_cols=152 Identities=34% Similarity=0.518 Sum_probs=122.6
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC--C---CCCeEEECCEeCCC--CCHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD--T---HSGSIRIDGQDICE--VTLES 530 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~--p---~~G~I~idG~~i~~--~~~~~ 530 (617)
.|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.+||.++.+ .+...
T Consensus 5 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14255 5 IITSSDVHLFYGK-FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ 83 (252)
T ss_pred eEEEEeEEEEECC-eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHH
Confidence 5899999999974 679999999999999999999999999999999999975 4 59999999999864 34556
Q ss_pred HhcceEEEccCCCcccccHHHHHhcCC--CCC-C----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 531 LRKSIGVVPQDTVLFNDTIFHNIRYGR--LSA-T----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 531 lr~~i~~V~Qd~~LF~gTIreNI~~g~--~~~-~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
+++.++||+|++.+|..|++||+.++. ... . ++++.++++.+++.+. +..........||||||||
T Consensus 84 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------i~~~~~~~~~~LS~Gq~qr 156 (252)
T PRK14255 84 LRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDE-------VKDHLHESALSLSGGQQQR 156 (252)
T ss_pred hcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccc-------hhhHHhcCcccCCHHHHHH
Confidence 788999999999999999999998652 111 1 2233444455544322 2233455677999999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
++||||++++|++|
T Consensus 157 v~laral~~~p~ll 170 (252)
T PRK14255 157 VCIARVLAVKPDVI 170 (252)
T ss_pred HHHHHHHhcCCCEE
Confidence 99999999999975
No 234
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5.2e-29 Score=256.34 Aligned_cols=153 Identities=35% Similarity=0.484 Sum_probs=122.6
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC-----CCCCeEEECCEeCCCC--CHH
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICEV--TLE 529 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~-----p~~G~I~idG~~i~~~--~~~ 529 (617)
..|+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.+||.++... +..
T Consensus 38 ~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~ 116 (286)
T PRK14275 38 PHVVAKNFSIYYGE-FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEV 116 (286)
T ss_pred eEEEEeeeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchH
Confidence 35899999999964 579999999999999999999999999999999999864 4999999999998653 334
Q ss_pred HHhcceEEEccCCCcccccHHHHHhcCCC--CC-C----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 007122 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA-T----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQ 602 (617)
Q Consensus 530 ~lr~~i~~V~Qd~~LF~gTIreNI~~g~~--~~-~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQ 602 (617)
.+|++++||+|++.+|..|++|||.++.. .. + ++++.++++..++.+.+. .........|||||||
T Consensus 117 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~q 189 (286)
T PRK14275 117 LLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNALGLSGGQQQ 189 (286)
T ss_pred HhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh-------hHhhCChhhCCHHHHH
Confidence 67889999999999999999999987531 11 1 123444555555432221 2234567789999999
Q ss_pred HHHHHHHHhCCCCCC
Q 007122 603 RVALARAFLKAPPIL 617 (617)
Q Consensus 603 RlaiARAll~~p~IL 617 (617)
|++|||||+.+|++|
T Consensus 190 rv~LAraL~~~p~ll 204 (286)
T PRK14275 190 RLCVARTLAVEPEIL 204 (286)
T ss_pred HHHHHHHHhcCCCEE
Confidence 999999999999975
No 235
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.96 E-value=4.7e-29 Score=258.75 Aligned_cols=148 Identities=32% Similarity=0.477 Sum_probs=121.3
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~ 536 (617)
..|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.|+...+ ...|++||
T Consensus 6 ~~i~i~~l~k~~~-~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ig 83 (306)
T PRK13537 6 APIDFRNVEKRYG-DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRVG 83 (306)
T ss_pred ceEEEEeEEEEEC-CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcEE
Confidence 3699999999996 457999999999999999999999999999999999999999999999999997754 45788999
Q ss_pred EEccCCCccc-ccHHHHHhcCCC--CCCHHHH----HHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 007122 537 VVPQDTVLFN-DTIFHNIRYGRL--SATEEEV----YDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (617)
Q Consensus 537 ~V~Qd~~LF~-gTIreNI~~g~~--~~~de~i----~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARA 609 (617)
||||++.+|. .|++||+.+... ..+.++. .++++.. .+++..++.++ +||||||||++||||
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~~~----~LS~G~~qrl~la~a 152 (306)
T PRK13537 84 VVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFA-------KLENKADAKVG----ELSGGMKRRLTLARA 152 (306)
T ss_pred EEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-------CCchHhcCchh----hCCHHHHHHHHHHHH
Confidence 9999999985 699999975321 1233322 2233332 23444555554 799999999999999
Q ss_pred HhCCCCCC
Q 007122 610 FLKAPPIL 617 (617)
Q Consensus 610 ll~~p~IL 617 (617)
|+++|++|
T Consensus 153 L~~~P~ll 160 (306)
T PRK13537 153 LVNDPDVL 160 (306)
T ss_pred HhCCCCEE
Confidence 99999975
No 236
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5.6e-29 Score=252.84 Aligned_cols=152 Identities=30% Similarity=0.429 Sum_probs=128.4
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC-----CCCeEEECCEeCCCC--CHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEV--TLES 530 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p-----~~G~I~idG~~i~~~--~~~~ 530 (617)
.+.++++++.|. +.++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.+. ....
T Consensus 8 ~~~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~ 86 (261)
T PRK14263 8 VMDCKLDKIFYG-NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVV 86 (261)
T ss_pred eEEEEeEEEEeC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHh
Confidence 589999999996 45799999999999999999999999999999999999987 799999999998643 4456
Q ss_pred HhcceEEEccCCCcccccHHHHHhcCCC-----CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 007122 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL-----SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605 (617)
Q Consensus 531 lr~~i~~V~Qd~~LF~gTIreNI~~g~~-----~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRla 605 (617)
+++.++||||++.+|..|+.|||.++.. ...++++.++++.+++.+.+.. ..++...+||||||||++
T Consensus 87 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qrv~ 159 (261)
T PRK14263 87 VRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQRLC 159 (261)
T ss_pred hhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHHHH
Confidence 7889999999999999999999987631 1123467777877777655433 234677899999999999
Q ss_pred HHHHHhCCCCCC
Q 007122 606 LARAFLKAPPIL 617 (617)
Q Consensus 606 iARAll~~p~IL 617 (617)
||||++++|++|
T Consensus 160 laral~~~p~ll 171 (261)
T PRK14263 160 IARAIATEPEVL 171 (261)
T ss_pred HHHHHHcCCCEE
Confidence 999999999985
No 237
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=7.5e-29 Score=244.68 Aligned_cols=145 Identities=25% Similarity=0.346 Sum_probs=118.0
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++|++++|++ +++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+. ..+++++|
T Consensus 11 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~~ 86 (214)
T PRK13543 11 LLAAHALAFSRNE-EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMAY 86 (214)
T ss_pred eEEEeeEEEecCC-ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceEE
Confidence 5999999999964 5799999999999999999999999999999999999999999999999988752 34568999
Q ss_pred EccCCCcccc-cHHHHHhcCCC--CCC-HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCC
Q 007122 538 VPQDTVLFND-TIFHNIRYGRL--SAT-EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (617)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~--~~~-de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~ 613 (617)
++|++.+|.+ |++||+.++.. ... ++.+.++++..++. +..++ ....||||||||++||||++++
T Consensus 87 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~----~~~~LS~G~~qrv~laral~~~ 155 (214)
T PRK13543 87 LGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLA-------GYEDT----LVRQLSAGQKKRLALARLWLSP 155 (214)
T ss_pred eecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCCh-------hhccC----ChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999986 99999976421 112 23334444444432 22333 3467999999999999999999
Q ss_pred CCCC
Q 007122 614 PPIL 617 (617)
Q Consensus 614 p~IL 617 (617)
|++|
T Consensus 156 p~ll 159 (214)
T PRK13543 156 APLW 159 (214)
T ss_pred CCEE
Confidence 9975
No 238
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=7e-29 Score=262.24 Aligned_cols=144 Identities=31% Similarity=0.448 Sum_probs=121.8
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCC----CHHHHhcc
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV----TLESLRKS 534 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~----~~~~lr~~ 534 (617)
|++ |++++|++ .. + |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+. +...++++
T Consensus 2 l~~-~l~k~~~~-~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 2 LEL-NFKQQLGD-LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred eEE-EEEEEeCC-EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 567 99999964 22 3 99999999999999999999999999999999999999999999998653 24456789
Q ss_pred eEEEccCCCccc-ccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCC
Q 007122 535 IGVVPQDTVLFN-DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (617)
Q Consensus 535 i~~V~Qd~~LF~-gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~ 613 (617)
++||+|++.+|. .|++|||.++.....++++.++++..++.++.++. ..+||||||||++|||||+++
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qRvalaraL~~~ 146 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRY-----------PGSLSGGEKQRVAIGRALLTA 146 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCC-----------cccCCHHHHHHHHHHHHHHcC
Confidence 999999999996 69999999875444556677777777776555443 368999999999999999999
Q ss_pred CCCC
Q 007122 614 PPIL 617 (617)
Q Consensus 614 p~IL 617 (617)
|++|
T Consensus 147 p~ll 150 (352)
T PRK11144 147 PELL 150 (352)
T ss_pred CCEE
Confidence 9975
No 239
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.96 E-value=6.9e-29 Score=249.88 Aligned_cols=148 Identities=24% Similarity=0.360 Sum_probs=115.3
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcC--CCCCCCeEEECCEeCCCCCHHHH-hcce
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--FDTHSGSIRIDGQDICEVTLESL-RKSI 535 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl--~~p~~G~I~idG~~i~~~~~~~l-r~~i 535 (617)
|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.+||.++.+.+.... +..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVE-DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEEC-CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 57899999996 45799999999999999999999999999999999999 47999999999999988887665 4459
Q ss_pred EEEccCCCcccc-cHHHHHhcCCCC---------CCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCC-CCChHH
Q 007122 536 GVVPQDTVLFND-TIFHNIRYGRLS---------ATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGL-KLSGGE 600 (617)
Q Consensus 536 ~~V~Qd~~LF~g-TIreNI~~g~~~---------~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~-~LSGGQ 600 (617)
+||+|++.+|.+ |++||+.+.... .+. +++.++++..++.+ ++ ....-. .|||||
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~---~~~~~~~~LS~G~ 149 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDE-------EF---LNRSVNEGFSGGE 149 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCch-------hh---cccccccCcCHHH
Confidence 999999999875 899999653210 111 12233333333321 11 112222 499999
Q ss_pred HHHHHHHHHHhCCCCCC
Q 007122 601 KQRVALARAFLKAPPIL 617 (617)
Q Consensus 601 rQRlaiARAll~~p~IL 617 (617)
|||++|||||+++|++|
T Consensus 150 ~qrl~la~al~~~p~ll 166 (243)
T TIGR01978 150 KKRNEILQMALLEPKLA 166 (243)
T ss_pred HHHHHHHHHHhcCCCEE
Confidence 99999999999999975
No 240
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.96 E-value=1e-28 Score=251.39 Aligned_cols=148 Identities=28% Similarity=0.437 Sum_probs=121.1
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCC---CCeEEECCEeCCCC-----CHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQDICEV-----TLE 529 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~---~G~I~idG~~i~~~-----~~~ 529 (617)
-|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+||.++... +..
T Consensus 4 ~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 4 IIRVEKLAKTFN-QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred EEEEeeEEEEeC-CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 589999999996 468999999999999999999999999999999999999986 49999999998654 345
Q ss_pred HHhcceEEEccCCCccc-ccHHHHHhcCCCCC--------------CHHHHHHHHHHHcHHHHHHhCCCCccccccCCCC
Q 007122 530 SLRKSIGVVPQDTVLFN-DTIFHNIRYGRLSA--------------TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGL 594 (617)
Q Consensus 530 ~lr~~i~~V~Qd~~LF~-gTIreNI~~g~~~~--------------~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~ 594 (617)
.+++.++|+||++.+|. .|++||+.++.... .++++.++++..++.+.+ .....
T Consensus 83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~ 151 (262)
T PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFA-----------HQRVS 151 (262)
T ss_pred HHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHH-----------hCCcc
Confidence 67888999999999887 59999998763210 122345555555554433 33556
Q ss_pred CCChHHHHHHHHHHHHhCCCCCC
Q 007122 595 KLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 595 ~LSGGQrQRlaiARAll~~p~IL 617 (617)
.||||||||++||||++.+|++|
T Consensus 152 ~LS~G~~qrv~laral~~~p~ll 174 (262)
T PRK09984 152 TLSGGQQQRVAIARALMQQAKVI 174 (262)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEE
Confidence 79999999999999999999975
No 241
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=9.1e-29 Score=235.98 Aligned_cols=154 Identities=31% Similarity=0.503 Sum_probs=127.8
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHH-hcceE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~l-r~~i~ 536 (617)
-++++|++-.|.. .++|+|+||++++||+++++|++|+||||++|.|+|+.+|.+|+|.++|.|+...+++.. |..|+
T Consensus 3 mL~v~~l~~~YG~-~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 3 MLEVENLSAGYGK-IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred ceeEEeEeecccc-eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 4789999999964 689999999999999999999999999999999999999999999999999999998865 66799
Q ss_pred EEccCCCcc-cccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCC
Q 007122 537 VVPQDTVLF-NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (617)
Q Consensus 537 ~V~Qd~~LF-~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~ 615 (617)
||||.-.+| +-|+.||+.+|.-...+++- ....+++..+-+|. +......++.+|||||+|-+||||||..+|+
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~~~~----~~~~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~~Pk 156 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRDKEA----QERDLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMSRPK 156 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhccccccc----ccccHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhcCCC
Confidence 999999999 56999999987322221111 11113344445554 5555677899999999999999999999999
Q ss_pred CC
Q 007122 616 IL 617 (617)
Q Consensus 616 IL 617 (617)
+|
T Consensus 157 lL 158 (237)
T COG0410 157 LL 158 (237)
T ss_pred EE
Confidence 75
No 242
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=8.2e-29 Score=240.86 Aligned_cols=142 Identities=21% Similarity=0.359 Sum_probs=117.7
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|+++|++++|++ +.++ ++||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ++.++|+
T Consensus 2 l~~~~l~~~~~~-~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~~ 75 (195)
T PRK13541 2 LSLHQLQFNIEQ-KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTYI 75 (195)
T ss_pred eEEEEeeEEECC-cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEec
Confidence 789999999964 4555 599999999999999999999999999999999999999999999886543 3469999
Q ss_pred ccCCC-cccccHHHHHhcCCCCC-CHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCC
Q 007122 539 PQDTV-LFNDTIFHNIRYGRLSA-TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPI 616 (617)
Q Consensus 539 ~Qd~~-LF~gTIreNI~~g~~~~-~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~I 616 (617)
+|++. +|+.|++|||.++.+.. .++++.++++..++.++. .....+||||||||++||||++++|++
T Consensus 76 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~~rl~la~al~~~p~~ 144 (195)
T PRK13541 76 GHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLL-----------DEKCYSLSSGMQKIVAIARLIACQSDL 144 (195)
T ss_pred cCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhh-----------ccChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99875 47889999998754322 345566666777765543 345678999999999999999999997
Q ss_pred C
Q 007122 617 L 617 (617)
Q Consensus 617 L 617 (617)
|
T Consensus 145 l 145 (195)
T PRK13541 145 W 145 (195)
T ss_pred E
Confidence 5
No 243
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.96 E-value=8.3e-29 Score=256.69 Aligned_cols=146 Identities=25% Similarity=0.432 Sum_probs=120.9
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+ +...++++++|+
T Consensus 3 l~~~~l~~~~~-~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~~ 80 (301)
T TIGR03522 3 IRVSSLTKLYG-TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGYL 80 (301)
T ss_pred EEEEEEEEEEC-CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEEe
Confidence 78999999996 4679999999999999999999999999999999999999999999999999876 445778899999
Q ss_pred ccCCCcccc-cHHHHHhcCCC--CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh
Q 007122 539 PQDTVLFND-TIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (617)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~--~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll 611 (617)
||++.+|.+ |++||+.+... ..+. +++.++++..+ ++........+||||||||++|||||+
T Consensus 81 ~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LS~G~~qrv~la~al~ 149 (301)
T TIGR03522 81 PEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVG-----------LRPEQHKKIGQLSKGYRQRVGLAQALI 149 (301)
T ss_pred cCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC-----------CchHhcCchhhCCHHHHHHHHHHHHHh
Confidence 999999976 99999975321 1222 22333333333 444445556789999999999999999
Q ss_pred CCCCCC
Q 007122 612 KAPPIL 617 (617)
Q Consensus 612 ~~p~IL 617 (617)
++|++|
T Consensus 150 ~~p~ll 155 (301)
T TIGR03522 150 HDPKVL 155 (301)
T ss_pred cCCCEE
Confidence 999975
No 244
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.96 E-value=2.6e-29 Score=230.04 Aligned_cols=129 Identities=45% Similarity=0.721 Sum_probs=117.8
Q ss_pred ceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCccccc-HHHHH
Q 007122 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDT-IFHNI 553 (617)
Q Consensus 475 L~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gT-IreNI 553 (617)
|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+++.++|++|++.+|.+. ++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999876 9999
Q ss_pred hcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 554 RYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 554 ~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
..++++.++++..++.+ ..++.++.+...||||||||++||||++++|++|
T Consensus 80 ------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~ll 130 (137)
T PF00005_consen 80 ------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLL 130 (137)
T ss_dssp ------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEE
T ss_pred ------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEE
Confidence 34566777777776654 4678888899999999999999999999999975
No 245
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.96 E-value=1.3e-28 Score=251.15 Aligned_cols=147 Identities=29% Similarity=0.458 Sum_probs=122.6
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCC--------CCeEEECCEeCCCCCHHH
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH--------SGSIRIDGQDICEVTLES 530 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~--------~G~I~idG~~i~~~~~~~ 530 (617)
|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+||.++.+.+...
T Consensus 2 l~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 2 LTADHLHVARR-HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred eEEEEEEEEEC-CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 78999999996 457999999999999999999999999999999999999998 999999999999888888
Q ss_pred HhcceEEEccCCC-cccccHHHHHhcCCC-C------CC---HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChH
Q 007122 531 LRKSIGVVPQDTV-LFNDTIFHNIRYGRL-S------AT---EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGG 599 (617)
Q Consensus 531 lr~~i~~V~Qd~~-LF~gTIreNI~~g~~-~------~~---de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGG 599 (617)
+++.++||||++. +|..|++||+.++.. . .+ ++.+.++++.. |+++.++.....||||
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG 149 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA-----------GATALVGRDVTTLSGG 149 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHc-----------CcHhhhcCCcccCCHH
Confidence 8889999999986 678999999987531 1 11 12233333333 4445556677899999
Q ss_pred HHHHHHHHHHHh---------CCCCCC
Q 007122 600 EKQRVALARAFL---------KAPPIL 617 (617)
Q Consensus 600 QrQRlaiARAll---------~~p~IL 617 (617)
||||++|||||+ .+|++|
T Consensus 150 ~~qrv~laral~~~~~~~~~~~~p~ll 176 (272)
T PRK13547 150 ELARVQFARVLAQLWPPHDAAQPPRYL 176 (272)
T ss_pred HHHHHHHHHHHhccccccccCCCCCEE
Confidence 999999999999 489875
No 246
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.96 E-value=1.2e-28 Score=245.04 Aligned_cols=149 Identities=29% Similarity=0.454 Sum_probs=115.3
Q ss_pred eEEEeEEEeecC------CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEEC--CE--eCCCCCH
Q 007122 459 IQFDNVHFSYLT------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID--GQ--DICEVTL 528 (617)
Q Consensus 459 I~~~nvsF~Y~~------~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~id--G~--~i~~~~~ 528 (617)
|+++|++++|+. ..++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+| |. ++.+++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 789999999963 1479999999999999999999999999999999999999999999998 42 6666665
Q ss_pred HH---H-hcceEEEccCCCccc-ccHHHHHhcCC--CCCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCC
Q 007122 529 ES---L-RKSIGVVPQDTVLFN-DTIFHNIRYGR--LSATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLS 597 (617)
Q Consensus 529 ~~---l-r~~i~~V~Qd~~LF~-gTIreNI~~g~--~~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LS 597 (617)
.. + +++++||+|++.+|. .|++|||.+.. ...+. +++.++++..++.+.. .......||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERL----------WHLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh----------hhCCcccCC
Confidence 43 2 457999999998886 49999997531 11222 2333333333332211 123467899
Q ss_pred hHHHHHHHHHHHHhCCCCCC
Q 007122 598 GGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 598 GGQrQRlaiARAll~~p~IL 617 (617)
||||||++|||||+++|++|
T Consensus 152 ~G~~qrl~laral~~~p~ll 171 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPIL 171 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999975
No 247
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.4e-28 Score=251.69 Aligned_cols=146 Identities=30% Similarity=0.415 Sum_probs=117.7
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++||+++|++++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+ ...++.++|
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~~ 82 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVAY 82 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEEE
Confidence 59999999999755789999999999999999999999999999999999999999999999998752 122346999
Q ss_pred EccCCCc---ccccHHHHHhcCCC---------CC-CHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 007122 538 VPQDTVL---FNDTIFHNIRYGRL---------SA-TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (617)
Q Consensus 538 V~Qd~~L---F~gTIreNI~~g~~---------~~-~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRl 604 (617)
+||++.+ +..+++||+.++.. .. .++.+.++++..++.++.+ + ....||||||||+
T Consensus 83 v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-------~----~~~~LSgG~~qrv 151 (272)
T PRK15056 83 VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH-------R----QIGELSGGQKKRV 151 (272)
T ss_pred eccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc-------C----CcccCCHHHHHHH
Confidence 9999865 46689999875421 01 1234555666666655432 2 3346999999999
Q ss_pred HHHHHHhCCCCCC
Q 007122 605 ALARAFLKAPPIL 617 (617)
Q Consensus 605 aiARAll~~p~IL 617 (617)
+|||||+++|++|
T Consensus 152 ~laraL~~~p~ll 164 (272)
T PRK15056 152 FLARAIAQQGQVI 164 (272)
T ss_pred HHHHHHhcCCCEE
Confidence 9999999999985
No 248
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.3e-28 Score=249.39 Aligned_cols=152 Identities=32% Similarity=0.524 Sum_probs=120.2
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCC-----CCeEEECCEeCCC--CCHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-----SGSIRIDGQDICE--VTLES 530 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~-----~G~I~idG~~i~~--~~~~~ 530 (617)
.|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+||.++.+ .+...
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYYG-DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEEC-CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 488999999997 458999999999999999999999999999999999999874 8999999999875 34557
Q ss_pred HhcceEEEccCCCcccc-cHHHHHhcCCC--CC-CHHHHHHH----HHHHcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 007122 531 LRKSIGVVPQDTVLFND-TIFHNIRYGRL--SA-TEEEVYDA----ARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQ 602 (617)
Q Consensus 531 lr~~i~~V~Qd~~LF~g-TIreNI~~g~~--~~-~de~i~~a----~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQ 602 (617)
+|+.++|++|++.+|.. |+.||+.++.. .. .+++..+. ++..++.+.+ ++.++ ....+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~----~~~~~LS~G~~q 155 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLK----TPATGLSGGQQQ 155 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhc----CCcccCCHHHHH
Confidence 78899999999999984 99999986431 11 23333332 2233332222 22233 345689999999
Q ss_pred HHHHHHHHhCCCCCC
Q 007122 603 RVALARAFLKAPPIL 617 (617)
Q Consensus 603 RlaiARAll~~p~IL 617 (617)
|++||||++++|++|
T Consensus 156 rv~laral~~~p~ll 170 (252)
T PRK14272 156 RLCIARALAVEPEIL 170 (252)
T ss_pred HHHHHHHHhcCCCEE
Confidence 999999999999985
No 249
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.96 E-value=8.9e-29 Score=240.26 Aligned_cols=123 Identities=34% Similarity=0.538 Sum_probs=110.3
Q ss_pred ceEEEeEEEeecC-----CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCC--CCCCCeEEECCEeCCCCCHHH
Q 007122 458 SIQFDNVHFSYLT-----ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF--DTHSGSIRIDGQDICEVTLES 530 (617)
Q Consensus 458 ~I~~~nvsF~Y~~-----~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~--~p~~G~I~idG~~i~~~~~~~ 530 (617)
.|+++||+|+|++ ++++|+|+||+|++||+++|+|+||||||||+++|+|++ +|++|+|.+||.++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 5899999999985 368999999999999999999999999999999999999 9999999999998864 36
Q ss_pred HhcceEEEccCCCccc-ccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 007122 531 LRKSIGVVPQDTVLFN-DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (617)
Q Consensus 531 lr~~i~~V~Qd~~LF~-gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARA 609 (617)
+++.++|++|++.+|. .|++||+.++.. + . .||||||||++||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~------~---------~-------------------~LS~G~~qrv~lara 125 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK------L---------R-------------------GLSGGERKRVSIALE 125 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH------h---------c-------------------cCCHHHHHHHHHHHH
Confidence 7889999999999987 599999975310 0 0 899999999999999
Q ss_pred HhCCCCCC
Q 007122 610 FLKAPPIL 617 (617)
Q Consensus 610 ll~~p~IL 617 (617)
++++|++|
T Consensus 126 l~~~p~il 133 (194)
T cd03213 126 LVSNPSLL 133 (194)
T ss_pred HHcCCCEE
Confidence 99999975
No 250
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.96 E-value=1.8e-28 Score=250.19 Aligned_cols=149 Identities=24% Similarity=0.374 Sum_probs=119.8
Q ss_pred ceEEEeEEEeecC--------CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHH
Q 007122 458 SIQFDNVHFSYLT--------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE 529 (617)
Q Consensus 458 ~I~~~nvsF~Y~~--------~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~ 529 (617)
.|+++||+++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 5899999999962 24799999999999999999999999999999999999999999999999999766666
Q ss_pred HHhcceEEEccCCC--ccc-ccHHHHHhcCC---CCCC----HHHHHHHHHHHcHH-HHHHhCCCCccccccCCCCCCCh
Q 007122 530 SLRKSIGVVPQDTV--LFN-DTIFHNIRYGR---LSAT----EEEVYDAARRAAIH-DTIMNFPAKYSTVVGERGLKLSG 598 (617)
Q Consensus 530 ~lr~~i~~V~Qd~~--LF~-gTIreNI~~g~---~~~~----de~i~~a~~~a~l~-~~I~~lp~GldT~vge~G~~LSG 598 (617)
.+++.++||||++. ++. -|+.||+.+.. .... ++++.++++..++. +... .....|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS-----------YYPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHh-----------cCchhcCH
Confidence 66778999999985 443 48999986421 1112 23455666666662 2221 23357999
Q ss_pred HHHHHHHHHHHHhCCCCCC
Q 007122 599 GEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 599 GQrQRlaiARAll~~p~IL 617 (617)
|||||++||||++++|++|
T Consensus 153 G~~qrv~laral~~~p~ll 171 (267)
T PRK15112 153 GQKQRLGLARALILRPKVI 171 (267)
T ss_pred HHHHHHHHHHHHHhCCCEE
Confidence 9999999999999999975
No 251
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.96 E-value=1.6e-28 Score=243.97 Aligned_cols=143 Identities=22% Similarity=0.378 Sum_probs=120.0
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ++.++|+
T Consensus 1 l~l~~v~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~~ 75 (223)
T TIGR03740 1 LETKNLSKRFG-KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGSL 75 (223)
T ss_pred CEEEeEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEEE
Confidence 57899999997 468999999999999999999999999999999999999999999999999875422 2479999
Q ss_pred ccCCCccc-ccHHHHHhcCCC--CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCC
Q 007122 539 PQDTVLFN-DTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (617)
Q Consensus 539 ~Qd~~LF~-gTIreNI~~g~~--~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~ 615 (617)
||++.+|. .|++||+.++.. ..+++++.++++..++.+..+. ....||||||||++||||++++|+
T Consensus 76 ~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rv~laral~~~p~ 144 (223)
T TIGR03740 76 IESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKK-----------KAKQFSLGMKQRLGIAIALLNHPK 144 (223)
T ss_pred cCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhh-----------hHhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999886 699999976421 2345667777777777654332 346799999999999999999999
Q ss_pred CC
Q 007122 616 IL 617 (617)
Q Consensus 616 IL 617 (617)
+|
T Consensus 145 ll 146 (223)
T TIGR03740 145 LL 146 (223)
T ss_pred EE
Confidence 75
No 252
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=1.6e-28 Score=236.13 Aligned_cols=118 Identities=31% Similarity=0.538 Sum_probs=107.5
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCH-HHHhcceE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~-~~lr~~i~ 536 (617)
.|+++|++++| +|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+. +.+|++++
T Consensus 4 ~l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (182)
T cd03215 4 VLEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA 78 (182)
T ss_pred EEEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeE
Confidence 48999999998 8999999999999999999999999999999999999999999999999998874 45688999
Q ss_pred EEccCC----CcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhC
Q 007122 537 VVPQDT----VLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612 (617)
Q Consensus 537 ~V~Qd~----~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~ 612 (617)
||+|++ .+++.|++||+.++.. ||||||||++||||+++
T Consensus 79 ~~~q~~~~~~~~~~~t~~e~l~~~~~-------------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 79 YVPEDRKREGLVLDLSVAENIALSSL-------------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred EecCCcccCcccCCCcHHHHHHHHhh-------------------------------------cCHHHHHHHHHHHHHcc
Confidence 999995 3556899999987521 99999999999999999
Q ss_pred CCCCC
Q 007122 613 APPIL 617 (617)
Q Consensus 613 ~p~IL 617 (617)
+|++|
T Consensus 122 ~p~ll 126 (182)
T cd03215 122 DPRVL 126 (182)
T ss_pred CCCEE
Confidence 99975
No 253
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.95 E-value=1.9e-28 Score=249.94 Aligned_cols=153 Identities=30% Similarity=0.464 Sum_probs=123.8
Q ss_pred ceEEEeEEEeecC--------CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHH
Q 007122 458 SIQFDNVHFSYLT--------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE 529 (617)
Q Consensus 458 ~I~~~nvsF~Y~~--------~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~ 529 (617)
.|+++||+|+|++ ++++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 4899999999974 46899999999999999999999999999999999999999999999999999887653
Q ss_pred ---HHhcceEEEccCCC--cc-cccHHHHHhcCCC---CCCHHHHHHHHHHHcHHHHHHhCCCCccc-cccCCCCCCChH
Q 007122 530 ---SLRKSIGVVPQDTV--LF-NDTIFHNIRYGRL---SATEEEVYDAARRAAIHDTIMNFPAKYST-VVGERGLKLSGG 599 (617)
Q Consensus 530 ---~lr~~i~~V~Qd~~--LF-~gTIreNI~~g~~---~~~de~i~~a~~~a~l~~~I~~lp~GldT-~vge~G~~LSGG 599 (617)
.+++.++||+|++. ++ ..|++||+.+... +.+. +.....+++.++.+ |+++ ........||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~-----~~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~G 155 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDK-----AERLARASEMLRAV--DLDDSVLDKRPPQLSGG 155 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCH-----HHHHHHHHHHHHHc--CCChhHhhCCCccCChH
Confidence 46889999999983 43 5799999865311 1111 11222344555554 5654 456677899999
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 007122 600 EKQRVALARAFLKAPPIL 617 (617)
Q Consensus 600 QrQRlaiARAll~~p~IL 617 (617)
||||++|||||+.+|++|
T Consensus 156 e~qrl~laral~~~p~ll 173 (268)
T PRK10419 156 QLQRVCLARALAVEPKLL 173 (268)
T ss_pred HHHHHHHHHHHhcCCCEE
Confidence 999999999999999985
No 254
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3.2e-28 Score=254.33 Aligned_cols=150 Identities=31% Similarity=0.445 Sum_probs=120.1
Q ss_pred ceEEEeEEEeecC---------CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCH
Q 007122 458 SIQFDNVHFSYLT---------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL 528 (617)
Q Consensus 458 ~I~~~nvsF~Y~~---------~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~ 528 (617)
-|+++|+++.|+. ..++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.++|.|+.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 5899999999963 2479999999999999999999999999999999999999999999999999998875
Q ss_pred H---HHhcceEEEccCCC--ccc-ccHHHHHhcC---CCCCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCC
Q 007122 529 E---SLRKSIGVVPQDTV--LFN-DTIFHNIRYG---RLSATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLK 595 (617)
Q Consensus 529 ~---~lr~~i~~V~Qd~~--LF~-gTIreNI~~g---~~~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~ 595 (617)
. .+|++|+||+|+|. |+. -|+.+|+... +...+. +++.++++.+++.+ .+++. ....
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~----~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDR----YPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcC----CCcc
Confidence 4 56789999999984 554 4899988531 111222 33455555555532 22333 3467
Q ss_pred CChHHHHHHHHHHHHhCCCCCC
Q 007122 596 LSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 596 LSGGQrQRlaiARAll~~p~IL 617 (617)
||||||||++|||||+.+|++|
T Consensus 155 LSgGq~QRv~iArAL~~~P~lL 176 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVV 176 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999999999999999975
No 255
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.5e-28 Score=249.23 Aligned_cols=152 Identities=30% Similarity=0.518 Sum_probs=122.3
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECC------EeCCCCCHHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG------QDICEVTLESL 531 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG------~~i~~~~~~~l 531 (617)
.|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .++.+++...+
T Consensus 10 ~i~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~ 88 (257)
T PRK14246 10 VFNISRLYLYIN-DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKL 88 (257)
T ss_pred heeeeeEEEecC-CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHH
Confidence 699999999996 46799999999999999999999999999999999999999997666654 67777777788
Q ss_pred hcceEEEccCCCcccc-cHHHHHhcCCC--CC-CHHH----HHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 532 RKSIGVVPQDTVLFND-TIFHNIRYGRL--SA-TEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 532 r~~i~~V~Qd~~LF~g-TIreNI~~g~~--~~-~de~----i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
|++++|++|++.+|.+ |++||+.++.. .. .+++ +.++++..++++++ +....+....||||||||
T Consensus 89 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~qr 161 (257)
T PRK14246 89 RKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQQQR 161 (257)
T ss_pred hcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHHHHH
Confidence 9999999999999975 99999987532 11 2222 33444444543322 122345677899999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
++||||++++|++|
T Consensus 162 l~laral~~~P~ll 175 (257)
T PRK14246 162 LTIARALALKPKVL 175 (257)
T ss_pred HHHHHHHHcCCCEE
Confidence 99999999999975
No 256
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.95 E-value=2.9e-28 Score=247.55 Aligned_cols=153 Identities=24% Similarity=0.309 Sum_probs=121.6
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEe-----CCCCCHHH--
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD-----ICEVTLES-- 530 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~-----i~~~~~~~-- 530 (617)
.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 6 LLSVRGLTKLYGP-RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred eEEEeeeEEEcCC-ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 5899999999964 579999999999999999999999999999999999999999999999998 87776654
Q ss_pred --HhcceEEEccCCC--cc-cccHHHHHhcCC---CCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 007122 531 --LRKSIGVVPQDTV--LF-NDTIFHNIRYGR---LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQ 602 (617)
Q Consensus 531 --lr~~i~~V~Qd~~--LF-~gTIreNI~~g~---~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQ 602 (617)
+++.++||||++. ++ ..|+.|||.+.. ...+.+++.+ .++++++.++-+ ++.+......|||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~-~~~~~~~~~~LS~Gq~q 158 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVEID-AARIDDLPTTFSGGMQQ 158 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcCCC-hhHHhCCCccCCHHHHH
Confidence 3567999999984 33 358899986421 0111222211 234566665432 24567788899999999
Q ss_pred HHHHHHHHhCCCCCC
Q 007122 603 RVALARAFLKAPPIL 617 (617)
Q Consensus 603 RlaiARAll~~p~IL 617 (617)
|++|||||+++|++|
T Consensus 159 rl~laral~~~p~ll 173 (258)
T PRK11701 159 RLQIARNLVTHPRLV 173 (258)
T ss_pred HHHHHHHHhcCCCEE
Confidence 999999999999985
No 257
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.95 E-value=2e-28 Score=256.82 Aligned_cols=152 Identities=30% Similarity=0.439 Sum_probs=121.3
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~ 536 (617)
..|+++||+++|+ +..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..+++.|+
T Consensus 40 ~~i~i~nl~k~y~-~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 40 VAIDLAGVSKSYG-DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eeEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 3699999999996 457999999999999999999999999999999999999999999999999997654 56788999
Q ss_pred EEccCCCcc-cccHHHHHhcCCC--CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCC
Q 007122 537 VVPQDTVLF-NDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (617)
Q Consensus 537 ~V~Qd~~LF-~gTIreNI~~g~~--~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~ 613 (617)
||||++.+| ..|++||+.+... ..+.++..+.++. +.+. ..|++..++.+ .+||||||||++|||||+.+
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--ll~~-~~L~~~~~~~~----~~LS~G~kqrv~lA~aL~~~ 190 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPS--LLEF-ARLESKADARV----SDLSGGMKRRLTLARALIND 190 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH--HHHH-cCCchhhCCCh----hhCCHHHHHHHHHHHHHhcC
Confidence 999999986 6799999975321 1232222222211 1121 23444455555 47999999999999999999
Q ss_pred CCCC
Q 007122 614 PPIL 617 (617)
Q Consensus 614 p~IL 617 (617)
|++|
T Consensus 191 P~lL 194 (340)
T PRK13536 191 PQLL 194 (340)
T ss_pred CCEE
Confidence 9975
No 258
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.7e-28 Score=237.96 Aligned_cols=122 Identities=27% Similarity=0.475 Sum_probs=108.5
Q ss_pred ceEEEeEEEeecC---CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCC--CCCCCeEEECCEeCCCCCHHHHh
Q 007122 458 SIQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF--DTHSGSIRIDGQDICEVTLESLR 532 (617)
Q Consensus 458 ~I~~~nvsF~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~--~p~~G~I~idG~~i~~~~~~~lr 532 (617)
.|+++|++|.|++ ++++|+|+||+|++||+++|+|+||||||||+++|+|++ +|++|+|.+||.++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 5899999999975 257999999999999999999999999999999999986 489999999999875 5677
Q ss_pred cceEEEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh
Q 007122 533 KSIGVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (617)
Q Consensus 533 ~~i~~V~Qd~~LF~g-TIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll 611 (617)
++++|++|++.+|.. |++||+.++. .++ .||||||||++||||++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~----------~~~------------------------~LSgGe~qrv~la~al~ 124 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSA----------LLR------------------------GLSVEQRKRLTIGVELA 124 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHH----------HHh------------------------cCCHHHhHHHHHHHHHh
Confidence 899999999988875 9999998641 000 89999999999999999
Q ss_pred CCCCCC
Q 007122 612 KAPPIL 617 (617)
Q Consensus 612 ~~p~IL 617 (617)
++|++|
T Consensus 125 ~~p~vl 130 (192)
T cd03232 125 AKPSIL 130 (192)
T ss_pred cCCcEE
Confidence 999975
No 259
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.95 E-value=2.8e-28 Score=247.02 Aligned_cols=148 Identities=24% Similarity=0.403 Sum_probs=119.2
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC----CCCeEEECCEeCCCCCHHHHhc
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT----HSGSIRIDGQDICEVTLESLRK 533 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p----~~G~I~idG~~i~~~~~~~lr~ 533 (617)
.|+++||+|+| ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +..++
T Consensus 4 ~l~~~~l~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~~ 79 (254)
T PRK10418 4 QIELRNIALQA--AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRGR 79 (254)
T ss_pred EEEEeCeEEEe--ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccccc
Confidence 58999999999 46899999999999999999999999999999999999999 999999999988632 22346
Q ss_pred ceEEEccCCC-ccc--ccHHHHHhcC----CCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 007122 534 SIGVVPQDTV-LFN--DTIFHNIRYG----RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606 (617)
Q Consensus 534 ~i~~V~Qd~~-LF~--gTIreNI~~g----~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlai 606 (617)
.++||+|++. .|. .|+.+|+.+. .....++++.++++..++.+. ++.+......||||||||++|
T Consensus 80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~l 151 (254)
T PRK10418 80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMMI 151 (254)
T ss_pred eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHHH
Confidence 7999999985 443 5888887531 112234556666666665431 234566678999999999999
Q ss_pred HHHHhCCCCCC
Q 007122 607 ARAFLKAPPIL 617 (617)
Q Consensus 607 ARAll~~p~IL 617 (617)
||||+++|++|
T Consensus 152 aral~~~p~lL 162 (254)
T PRK10418 152 ALALLCEAPFI 162 (254)
T ss_pred HHHHhcCCCEE
Confidence 99999999985
No 260
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.95 E-value=4e-28 Score=256.89 Aligned_cols=141 Identities=33% Similarity=0.481 Sum_probs=114.2
Q ss_pred eEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCC----HHHHhcceEEE
Q 007122 463 NVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT----LESLRKSIGVV 538 (617)
Q Consensus 463 nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~----~~~lr~~i~~V 538 (617)
|++++|++ .. + |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ...++++++||
T Consensus 4 ~l~~~~~~-~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLGD-FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEECC-EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence 88999964 34 4 999999999999999999999999999999999999999999999987543 34567899999
Q ss_pred ccCCCcccc-cHHHHHhcCCCCCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCC
Q 007122 539 PQDTVLFND-TIFHNIRYGRLSATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (617)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~ 613 (617)
+|++.+|.. |++||+.++...... +++.+.++..++. .........||||||||++|||||+.+
T Consensus 81 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~-----------~~~~~~~~~LSgGqkqRvalAraL~~~ 149 (354)
T TIGR02142 81 FQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIG-----------HLLGRLPGRLSGGEKQRVAIGRALLSS 149 (354)
T ss_pred ecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCCh-----------hHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999975 999999986432221 2244444444443 334445578999999999999999999
Q ss_pred CCCC
Q 007122 614 PPIL 617 (617)
Q Consensus 614 p~IL 617 (617)
|++|
T Consensus 150 p~ll 153 (354)
T TIGR02142 150 PRLL 153 (354)
T ss_pred CCEE
Confidence 9975
No 261
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.95 E-value=2.7e-28 Score=257.89 Aligned_cols=136 Identities=28% Similarity=0.342 Sum_probs=112.0
Q ss_pred CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCE----eCCCCCHHHHh----cceEEEccCC
Q 007122 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ----DICEVTLESLR----KSIGVVPQDT 542 (617)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~----~i~~~~~~~lr----~~i~~V~Qd~ 542 (617)
...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||. ++.+.+.+.++ ++|+||+|++
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 346899999999999999999999999999999999999999999999996 66677665543 5899999999
Q ss_pred Cccc-ccHHHHHhcCCC--CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCC
Q 007122 543 VLFN-DTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (617)
Q Consensus 543 ~LF~-gTIreNI~~g~~--~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~ 615 (617)
.+|+ .|++||+.++.. ..+. +.+.++++..++.++.+.. ..+||||||||++|||||+.+|+
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~-----------~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKK-----------PGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHHHhcCCC
Confidence 9997 799999987631 1222 3455666666665554433 34799999999999999999999
Q ss_pred CC
Q 007122 616 IL 617 (617)
Q Consensus 616 IL 617 (617)
||
T Consensus 185 IL 186 (382)
T TIGR03415 185 IL 186 (382)
T ss_pred EE
Confidence 85
No 262
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.95 E-value=8.5e-28 Score=251.45 Aligned_cols=156 Identities=24% Similarity=0.410 Sum_probs=119.9
Q ss_pred ceEEEeEEEeecC---CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCC---CCeEEECCEeCCCCCHHHH
Q 007122 458 SIQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQDICEVTLESL 531 (617)
Q Consensus 458 ~I~~~nvsF~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~---~G~I~idG~~i~~~~~~~l 531 (617)
.|+++|+++.|+. ..++++|+||+|++||++||||+||||||||+++|+|+++|+ +|+|.+||.++.+++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 5899999999963 247999999999999999999999999999999999999996 9999999999999987765
Q ss_pred h----cceEEEccCCC--ccc-ccHHHHHhcC---CCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHH
Q 007122 532 R----KSIGVVPQDTV--LFN-DTIFHNIRYG---RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEK 601 (617)
Q Consensus 532 r----~~i~~V~Qd~~--LF~-gTIreNI~~g---~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQr 601 (617)
+ ++|+||+|+|. ++. -|+.+|+... ....+.++..+.+... + +. ..||++.+ .++.....||||||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~-L-~~-vgL~~~~~-~~~~~p~~LSgG~~ 167 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRM-L-DA-VKMPEARK-RMKMYPHEFSGGMR 167 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH-H-HH-cCCCChHH-HhcCCcccCCHHHH
Confidence 4 47999999983 443 5777776421 1123333322222111 1 11 13454433 35677889999999
Q ss_pred HHHHHHHHHhCCCCCC
Q 007122 602 QRVALARAFLKAPPIL 617 (617)
Q Consensus 602 QRlaiARAll~~p~IL 617 (617)
||++|||||+.+|++|
T Consensus 168 QRv~IArAL~~~P~ll 183 (330)
T PRK09473 168 QRVMIAMALLCRPKLL 183 (330)
T ss_pred HHHHHHHHHHcCCCEE
Confidence 9999999999999975
No 263
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3.2e-28 Score=254.35 Aligned_cols=152 Identities=26% Similarity=0.377 Sum_probs=118.2
Q ss_pred ceEEEeEEEeecCC---cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC----CCCCeEEECCEeCCCCCHHH
Q 007122 458 SIQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD----THSGSIRIDGQDICEVTLES 530 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~----p~~G~I~idG~~i~~~~~~~ 530 (617)
-|+++|+++.|+.. .++|+|+||+|++||.+||||+||||||||+++|+|+++ |++|+|.+||.|+.+++.++
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 38999999999743 369999999999999999999999999999999999998 48999999999999998776
Q ss_pred Hhc----ceEEEccCCC--ccc-ccHHHHH----hcCC--C-CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCC
Q 007122 531 LRK----SIGVVPQDTV--LFN-DTIFHNI----RYGR--L-SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKL 596 (617)
Q Consensus 531 lr~----~i~~V~Qd~~--LF~-gTIreNI----~~g~--~-~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~L 596 (617)
+++ +|+||||+|. ++. -|+.+|+ .... + ...++++.++++.+++.+.. ..+......|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhC
Confidence 543 6999999995 332 3555544 3321 1 11123455666666654321 2234567789
Q ss_pred ChHHHHHHHHHHHHhCCCCCC
Q 007122 597 SGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 597 SGGQrQRlaiARAll~~p~IL 617 (617)
|||||||++|||||+.+|++|
T Consensus 155 SgGq~QRv~iArAL~~~P~ll 175 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLL 175 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEE
Confidence 999999999999999999975
No 264
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.95 E-value=2.8e-28 Score=252.99 Aligned_cols=138 Identities=28% Similarity=0.454 Sum_probs=112.1
Q ss_pred eecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCccc
Q 007122 467 SYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN 546 (617)
Q Consensus 467 ~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~ 546 (617)
+|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++++||||++.+|.
T Consensus 2 ~y~-~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~ 79 (302)
T TIGR01188 2 VYG-DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDE 79 (302)
T ss_pred eeC-CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCC
Confidence 454 4579999999999999999999999999999999999999999999999999876 44577889999999999997
Q ss_pred c-cHHHHHhcCCC--CCC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 547 D-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 547 g-TIreNI~~g~~--~~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
. |++||+.+... ..+ ++++.++++..++.+. .......||||||||++|||||+++|++|
T Consensus 80 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~al~~~p~ll 146 (302)
T TIGR01188 80 DLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEA-----------ADRPVGTYSGGMRRRLDIAASLIHQPDVL 146 (302)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------hCCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 5 99999986421 122 2234445555554332 22344689999999999999999999975
No 265
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.95 E-value=3.3e-24 Score=223.28 Aligned_cols=288 Identities=20% Similarity=0.272 Sum_probs=197.9
Q ss_pred HHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH------HHHHH
Q 007122 316 NDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNV-IFSAALSTAMV------LCSHG 388 (617)
Q Consensus 316 ~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~ 388 (617)
+.........+.|-++|-.|+..+.+.++.+...+..........+...+...+-.+ +-.......++ +..-.
T Consensus 300 g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~ 379 (728)
T KOG0064|consen 300 GYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTL 379 (728)
T ss_pred cHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeeccc
Confidence 344455667888999999999999999888887666655433322222222111111 11000000011 11111
Q ss_pred HhcCCcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-----------c--CC-
Q 007122 389 ILSGEMT--------VGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADI-----------Q--DR- 446 (617)
Q Consensus 389 v~~g~lt--------~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~-----------~--~~- 446 (617)
...+... ...++..-.++......+..++..+.++.+-.+--.|+.+.++.-++. + +.
T Consensus 380 ~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~ 459 (728)
T KOG0064|consen 380 ASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSR 459 (728)
T ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhcc
Confidence 1112211 123444444566677788888999999988888888887654321110 0 00
Q ss_pred -----CCCCCCC-----CCCcceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeE
Q 007122 447 -----DNAMPLN-----LKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI 516 (617)
Q Consensus 447 -----~~~~~~~-----~~~~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I 516 (617)
.+..+.+ .....|.++||-.--|+++-+...+||+|++|..+.|+||+|||||+|.++|.|+|+...|..
T Consensus 460 ~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L 539 (728)
T KOG0064|consen 460 TIDESRNSNPLPTTDAIRNFNGIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLL 539 (728)
T ss_pred CccccccCCcCCccchhhcccceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCee
Confidence 0000000 012359999998877777789999999999999999999999999999999999999999988
Q ss_pred EECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCC-------CCCCHHHHHHHHHHHcHHHHHHhCCCCccccc
Q 007122 517 RIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGR-------LSATEEEVYDAARRAAIHDTIMNFPAKYSTVV 589 (617)
Q Consensus 517 ~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~-------~~~~de~i~~a~~~a~l~~~I~~lp~GldT~v 589 (617)
.+-- +.+|-|+||.|+.=-||+||-|.|.+ .+.+|+|+.+.++.+.|+. |.+...|+|. +
T Consensus 540 ~~P~-----------~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~-i~qr~~g~da-~ 606 (728)
T KOG0064|consen 540 SIPR-----------PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEH-ILQREGGWDA-V 606 (728)
T ss_pred ecCC-----------CcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHH-HHHhccChhh-h
Confidence 7643 33699999999999999999998864 3578999999999999975 5566788876 4
Q ss_pred cCCCCCCChHHHHHHHHHHHHhCCCCC
Q 007122 590 GERGLKLSGGEKQRVALARAFLKAPPI 616 (617)
Q Consensus 590 ge~G~~LSGGQrQRlaiARAll~~p~I 616 (617)
.+.---||||+|||+++||.+|++|+.
T Consensus 607 ~dWkd~LsgGekQR~~mARm~yHrPky 633 (728)
T KOG0064|consen 607 RDWKDVLSGGEKQRMGMARMFYHRPKY 633 (728)
T ss_pred ccHHhhccchHHHHHHHHHHHhcCcch
Confidence 456667999999999999999999973
No 266
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=8.3e-28 Score=237.29 Aligned_cols=147 Identities=28% Similarity=0.436 Sum_probs=115.5
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCC----HHHHhcc
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT----LESLRKS 534 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~----~~~lr~~ 534 (617)
+++ ||+++|++ ..+ |+||+|++ |+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+ ...++++
T Consensus 2 ~~~-~l~~~~~~-~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 76 (214)
T cd03297 2 LCV-DIEKRLPD-FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRK 76 (214)
T ss_pred cee-eeeEecCC-eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhc
Confidence 345 89999975 344 99999999 999999999999999999999999999999999999986432 3456789
Q ss_pred eEEEccCCCccc-ccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCC
Q 007122 535 IGVVPQDTVLFN-DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (617)
Q Consensus 535 i~~V~Qd~~LF~-gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~ 613 (617)
++||+|++.+|. .|++||+.++......++ ....+.++++.+ |++.........||||||||++||||++.+
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 149 (214)
T cd03297 77 IGLVFQQYALFPHLNVRENLAFGLKRKRNRE-----DRISVDELLDLL--GLDHLLNRYPAQLSGGEKQRVALARALAAQ 149 (214)
T ss_pred EEEEecCCccCCCCCHHHHHHHHHhhCCHHH-----HHHHHHHHHHHc--CCHhHhhcCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999995 599999987642212111 111233344443 444445566789999999999999999999
Q ss_pred CCCC
Q 007122 614 PPIL 617 (617)
Q Consensus 614 p~IL 617 (617)
|++|
T Consensus 150 p~ll 153 (214)
T cd03297 150 PELL 153 (214)
T ss_pred CCEE
Confidence 9975
No 267
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.95 E-value=1.4e-27 Score=240.99 Aligned_cols=136 Identities=35% Similarity=0.536 Sum_probs=118.5
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| +..++|
T Consensus 4 ~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~~ 71 (251)
T PRK09544 4 LVSLENVSVSFG-QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIGY 71 (251)
T ss_pred EEEEeceEEEEC-CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEEE
Confidence 589999999997 45799999999999999999999999999999999999999999999987 347999
Q ss_pred EccCCCccc---ccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCC
Q 007122 538 VPQDTVLFN---DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (617)
Q Consensus 538 V~Qd~~LF~---gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p 614 (617)
+||++.++. .|+++|+.+. +..+++++.++++..++.+.++. ....||||||||++||||++++|
T Consensus 72 v~q~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 72 VPQKLYLDTTLPLTVNRFLRLR-PGTKKEDILPALKRVQAGHLIDA-----------PMQKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred eccccccccccChhHHHHHhcc-ccccHHHHHHHHHHcCChHHHhC-----------ChhhCCHHHHHHHHHHHHHhcCC
Confidence 999998865 4899998764 34556778888888888776543 34679999999999999999999
Q ss_pred CCC
Q 007122 615 PIL 617 (617)
Q Consensus 615 ~IL 617 (617)
++|
T Consensus 140 ~ll 142 (251)
T PRK09544 140 QLL 142 (251)
T ss_pred CEE
Confidence 975
No 268
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=5e-28 Score=218.71 Aligned_cols=149 Identities=36% Similarity=0.478 Sum_probs=120.3
Q ss_pred ceEEEeEEEeecC---CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHH---H
Q 007122 458 SIQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---L 531 (617)
Q Consensus 458 ~I~~~nvsF~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~---l 531 (617)
-|++++++..-+. .-++|++++|.|++||.+|||||||||||||+-+|+|+-+|++|+|.+.|+++.+++.+. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 5888888887763 237999999999999999999999999999999999999999999999999999999664 3
Q ss_pred -hcceEEEccCCCcc-cccHHHHHhcCCC----CCCH--HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 532 -RKSIGVVPQDTVLF-NDTIFHNIRYGRL----SATE--EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 532 -r~~i~~V~Qd~~LF-~gTIreNI~~g~~----~~~d--e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
.+++|+|+|..+|. +-|-.||+.+... ...| +.-.+-++.+|+.+-+ ..--.+|||||+||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl-----------~HyP~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRL-----------THYPAQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCccccc-----------ccCccccCchHHHH
Confidence 45899999999977 7799999976421 1111 1133344455554443 34446899999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
+|||||+...|+||
T Consensus 155 VAiARAfa~~P~vL 168 (228)
T COG4181 155 VALARAFAGRPDVL 168 (228)
T ss_pred HHHHHHhcCCCCEE
Confidence 99999999999986
No 269
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.95 E-value=1e-27 Score=242.91 Aligned_cols=152 Identities=28% Similarity=0.326 Sum_probs=120.4
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEe-----CCCCCHHHH-
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD-----ICEVTLESL- 531 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~-----i~~~~~~~l- 531 (617)
.|+++||+++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.+ +.+++..+.
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 3 LLQVSGLSKSYGG-GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred eEEEeeeEEEeCC-ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 5899999999964 579999999999999999999999999999999999999999999999988 766665543
Q ss_pred ---hcceEEEccCCC--c-ccccHHHHHhcCC---CCCCHHHHHHHHHHHcHHHHHHhCCCCcc-ccccCCCCCCChHHH
Q 007122 532 ---RKSIGVVPQDTV--L-FNDTIFHNIRYGR---LSATEEEVYDAARRAAIHDTIMNFPAKYS-TVVGERGLKLSGGEK 601 (617)
Q Consensus 532 ---r~~i~~V~Qd~~--L-F~gTIreNI~~g~---~~~~de~i~~a~~~a~l~~~I~~lp~Gld-T~vge~G~~LSGGQr 601 (617)
++.++|++|++. + +..|+.||+.++. ......+. ...++++++.++ ++ +........||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l~--l~~~~~~~~~~~LSgG~~ 154 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEVE--IDPTRIDDLPRAFSGGMQ 154 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHcC--CChhhhhcCchhcCHHHH
Confidence 467999999984 2 3458889986421 00111111 134456666663 33 456777889999999
Q ss_pred HHHHHHHHHhCCCCCC
Q 007122 602 QRVALARAFLKAPPIL 617 (617)
Q Consensus 602 QRlaiARAll~~p~IL 617 (617)
||++|||||+++|++|
T Consensus 155 qrv~laral~~~p~vl 170 (253)
T TIGR02323 155 QRLQIARNLVTRPRLV 170 (253)
T ss_pred HHHHHHHHHhcCCCEE
Confidence 9999999999999985
No 270
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=1.4e-27 Score=245.53 Aligned_cols=148 Identities=32% Similarity=0.518 Sum_probs=126.8
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++||+.+|+.++.+|+|+||+|++|+.+|++||||||||||+|+|+|+..|++|+|.++|.|..+- ...+++++||
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~igy 82 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIGY 82 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheEE
Confidence 578999999997567899999999999999999999999999999999999999999999999998765 7788999999
Q ss_pred EccCCCcc-cccHHHHHhcC-----CC-CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 007122 538 VPQDTVLF-NDTIFHNIRYG-----RL-SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (617)
Q Consensus 538 V~Qd~~LF-~gTIreNI~~g-----~~-~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAl 610 (617)
|||+|.++ .-|++||+.|. .+ +..++++.+.++..++.+.- ...-..||+|||||++||+||
T Consensus 83 ~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~aL 151 (293)
T COG1131 83 VPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALAL 151 (293)
T ss_pred EccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHHH
Confidence 99999977 45999999763 22 12345677788877775511 334567999999999999999
Q ss_pred hCCCCCC
Q 007122 611 LKAPPIL 617 (617)
Q Consensus 611 l~~p~IL 617 (617)
+.+|++|
T Consensus 152 ~~~P~ll 158 (293)
T COG1131 152 LHDPELL 158 (293)
T ss_pred hcCCCEE
Confidence 9999975
No 271
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.95 E-value=1.2e-27 Score=241.57 Aligned_cols=156 Identities=24% Similarity=0.359 Sum_probs=112.8
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcC--CCCCCCeEEECCEeCCCCCHHHHh-cce
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--FDTHSGSIRIDGQDICEVTLESLR-KSI 535 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl--~~p~~G~I~idG~~i~~~~~~~lr-~~i 535 (617)
|+++|++++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+ ++|++|+|.+||.++.+.+....+ ..+
T Consensus 2 i~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 2 LSIKDLHVSVE-DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred eEEEEEEEEeC-CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 78999999997 45799999999999999999999999999999999999 479999999999999888876654 579
Q ss_pred EEEccCCCcccc-cHHHHHhcCCCCC---CHHHHHHHHH-HHcHHHHHH--hCCCCccccccCCCCCCChHHHHHHHHHH
Q 007122 536 GVVPQDTVLFND-TIFHNIRYGRLSA---TEEEVYDAAR-RAAIHDTIM--NFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (617)
Q Consensus 536 ~~V~Qd~~LF~g-TIreNI~~g~~~~---~de~i~~a~~-~a~l~~~I~--~lp~GldT~vge~G~~LSGGQrQRlaiAR 608 (617)
+|++|++.++.. |..+++.+..... ..++..+..+ ...+.+.++ .+|+++.+... ...||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~~~LS~G~~qrv~lar 158 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV--NVGFSGGEKKRNDILQ 158 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC--CCCCCHHHHHHHHHHH
Confidence 999999987754 4444443211000 0000000000 011122222 34544443222 2379999999999999
Q ss_pred HHhCCCCCC
Q 007122 609 AFLKAPPIL 617 (617)
Q Consensus 609 All~~p~IL 617 (617)
|++++|+||
T Consensus 159 al~~~p~il 167 (248)
T PRK09580 159 MAVLEPELC 167 (248)
T ss_pred HHHcCCCEE
Confidence 999999985
No 272
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.4e-27 Score=250.28 Aligned_cols=152 Identities=22% Similarity=0.299 Sum_probs=119.6
Q ss_pred ceEEEeEEEeecC---CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC----CCCCeEEECCEeCCCCCHHH
Q 007122 458 SIQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD----THSGSIRIDGQDICEVTLES 530 (617)
Q Consensus 458 ~I~~~nvsF~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~----p~~G~I~idG~~i~~~~~~~ 530 (617)
-|+++|++++|+. ...+|+|+||+|++||+++|||+||||||||+++|+|+.+ |++|+|.+||.++.+++.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 4899999999963 2479999999999999999999999999999999999986 58999999999999888766
Q ss_pred Hh----cceEEEccCCCc--c-cccHHHHHhcCC------C----C--CCHHHHHHHHHHHcHHHHHHhCCCCccccccC
Q 007122 531 LR----KSIGVVPQDTVL--F-NDTIFHNIRYGR------L----S--ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGE 591 (617)
Q Consensus 531 lr----~~i~~V~Qd~~L--F-~gTIreNI~~g~------~----~--~~de~i~~a~~~a~l~~~I~~lp~GldT~vge 591 (617)
++ ++|+||+|++.. + ..|+.+|+.... . + ..++++.++++..++.+.- .....
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK--------DAMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH--------HHHhC
Confidence 53 479999999973 3 458999986420 0 0 0123455666666664311 11233
Q ss_pred CCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 592 RGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 592 ~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
....||||||||++|||||+.+|+||
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~ll 180 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLL 180 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEE
Confidence 45689999999999999999999985
No 273
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.95 E-value=1.8e-27 Score=240.94 Aligned_cols=149 Identities=21% Similarity=0.311 Sum_probs=117.6
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcC--CCCCCCeEEECCEeCCCCCHHHHhc-c
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--FDTHSGSIRIDGQDICEVTLESLRK-S 534 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl--~~p~~G~I~idG~~i~~~~~~~lr~-~ 534 (617)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.++|.++.+++...+++ .
T Consensus 7 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 85 (252)
T CHL00131 7 ILEIKNLHASVNE-NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLG 85 (252)
T ss_pred eEEEEeEEEEeCC-EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheee
Confidence 5999999999973 5799999999999999999999999999999999998 6899999999999999888776665 5
Q ss_pred eEEEccCCCcccc-cHHHHHhcCCC---------CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCC-CCChH
Q 007122 535 IGVVPQDTVLFND-TIFHNIRYGRL---------SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGL-KLSGG 599 (617)
Q Consensus 535 i~~V~Qd~~LF~g-TIreNI~~g~~---------~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~-~LSGG 599 (617)
++|++|++.+|.+ |+.+|+.++.. +.+. +++.++++..++.+ +.+..... .||||
T Consensus 86 ~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~LSgG 155 (252)
T CHL00131 86 IFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP----------SFLSRNVNEGFSGG 155 (252)
T ss_pred EEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch----------hhhccccccCCCHH
Confidence 8999999999975 78999875421 0111 12233333333321 12223332 59999
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 007122 600 EKQRVALARAFLKAPPIL 617 (617)
Q Consensus 600 QrQRlaiARAll~~p~IL 617 (617)
||||++||||++++|++|
T Consensus 156 ~~qrv~la~al~~~p~ll 173 (252)
T CHL00131 156 EKKRNEILQMALLDSELA 173 (252)
T ss_pred HHHHHHHHHHHHcCCCEE
Confidence 999999999999999975
No 274
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.95 E-value=1.3e-27 Score=229.45 Aligned_cols=119 Identities=39% Similarity=0.609 Sum_probs=107.4
Q ss_pred EEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc
Q 007122 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP 539 (617)
Q Consensus 460 ~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~ 539 (617)
+++||+|+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+++.++|++
T Consensus 1 ~~~~l~~~~~~-~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~ 79 (180)
T cd03214 1 EVENLSVGYGG-RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVP 79 (180)
T ss_pred CeeEEEEEECC-eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHH
Confidence 57899999974 67999999999999999999999999999999999999999999999999999988888888999999
Q ss_pred cCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 540 QDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 540 Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
| +++..++.+++.. ....||||||||++||||++++|+++
T Consensus 80 q---------------------------~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~ll 119 (180)
T cd03214 80 Q---------------------------ALELLGLAHLADR-----------PFNELSGGERQRVLLARALAQEPPIL 119 (180)
T ss_pred H---------------------------HHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9 6666677665433 45689999999999999999999975
No 275
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3e-27 Score=262.36 Aligned_cols=152 Identities=26% Similarity=0.413 Sum_probs=120.8
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCH-HHHhcceE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~-~~lr~~i~ 536 (617)
.|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. +.+|++++
T Consensus 4 ~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 4 YLSFDGIGKTFP-GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred eEEEeeeEEEEC-CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 589999999996 4579999999999999999999999999999999999999999999999999876553 45678999
Q ss_pred EEccCCCcccc-cHHHHHhcCCC----C-CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 007122 537 VVPQDTVLFND-TIFHNIRYGRL----S-ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (617)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~----~-~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAl 610 (617)
||+|++.+|.. |++||+.++.. . .+.++..+ .+.+.++.+ |++.........||||||||++|||||
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~laral 155 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAKAL 155 (501)
T ss_pred EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHHHH
Confidence 99999998875 99999988631 1 12222211 122333333 232223344568999999999999999
Q ss_pred hCCCCCC
Q 007122 611 LKAPPIL 617 (617)
Q Consensus 611 l~~p~IL 617 (617)
+.+|++|
T Consensus 156 ~~~p~ll 162 (501)
T PRK11288 156 ARNARVI 162 (501)
T ss_pred HhCCCEE
Confidence 9999975
No 276
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.95 E-value=2.8e-27 Score=230.91 Aligned_cols=122 Identities=26% Similarity=0.413 Sum_probs=106.1
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcC--CCCCCCeEEECCEeCCCCCHHHH-hcce
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--FDTHSGSIRIDGQDICEVTLESL-RKSI 535 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl--~~p~~G~I~idG~~i~~~~~~~l-r~~i 535 (617)
++++|++++|+ ++++++|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.+||.++.+.+.... |.++
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSVG-GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred CeEEEEEEEeC-CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 57899999997 45799999999999999999999999999999999999 58999999999999999887655 5569
Q ss_pred EEEccCCCccccc-HHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCC
Q 007122 536 GVVPQDTVLFNDT-IFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (617)
Q Consensus 536 ~~V~Qd~~LF~gT-IreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p 614 (617)
+||||++.+|.++ +++|+ .. ....||||||||++||||++++|
T Consensus 80 ~~v~q~~~~~~~~~~~~~l-------------------------~~-----------~~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 80 FLAFQYPPEIPGVKNADFL-------------------------RY-----------VNEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred EEeecChhhccCccHHHHH-------------------------hh-----------ccccCCHHHHHHHHHHHHHhcCC
Confidence 9999999998764 44443 00 12479999999999999999999
Q ss_pred CCC
Q 007122 615 PIL 617 (617)
Q Consensus 615 ~IL 617 (617)
+||
T Consensus 124 ~il 126 (200)
T cd03217 124 DLA 126 (200)
T ss_pred CEE
Confidence 985
No 277
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.94 E-value=3.5e-27 Score=262.09 Aligned_cols=148 Identities=22% Similarity=0.389 Sum_probs=121.9
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHh-cceE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLR-KSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr-~~i~ 536 (617)
.|+++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ ..++
T Consensus 11 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 89 (510)
T PRK15439 11 LLCARSISKQYS-GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIY 89 (510)
T ss_pred eEEEEeEEEEeC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEE
Confidence 599999999996 45799999999999999999999999999999999999999999999999999888776655 4699
Q ss_pred EEccCCCcccc-cHHHHHhcCCCCC--CHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCC
Q 007122 537 VVPQDTVLFND-TIFHNIRYGRLSA--TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (617)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~~~--~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~ 613 (617)
||+|++.+|.. |++||+.++.... .++++.++++..++. ......-..||||||||++|||||+.+
T Consensus 90 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 90 LVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQ-----------LDLDSSAGSLEVADRQIVEILRGLMRD 158 (510)
T ss_pred EEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCC-----------ccccCChhhCCHHHHHHHHHHHHHHcC
Confidence 99999998865 9999998864321 123334444444332 223334567999999999999999999
Q ss_pred CCCC
Q 007122 614 PPIL 617 (617)
Q Consensus 614 p~IL 617 (617)
|++|
T Consensus 159 p~ll 162 (510)
T PRK15439 159 SRIL 162 (510)
T ss_pred CCEE
Confidence 9985
No 278
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.8e-27 Score=261.82 Aligned_cols=152 Identities=24% Similarity=0.382 Sum_probs=121.0
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC--CCCeEEECCEeCCCCCHHH-Hhcc
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT--HSGSIRIDGQDICEVTLES-LRKS 534 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p--~~G~I~idG~~i~~~~~~~-lr~~ 534 (617)
.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... +|++
T Consensus 5 ~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 5 LLEMKNITKTFG-GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred eEEEeeeEEEeC-CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 589999999996 45799999999999999999999999999999999999996 8999999999998777654 4678
Q ss_pred eEEEccCCCccc-ccHHHHHhcCCCC-----CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 007122 535 IGVVPQDTVLFN-DTIFHNIRYGRLS-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (617)
Q Consensus 535 i~~V~Qd~~LF~-gTIreNI~~g~~~-----~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiAR 608 (617)
++||||++.+|. .|++|||.++... .+.++..+. +.+.++.+ |++......-..||||||||++|||
T Consensus 84 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la~ 156 (506)
T PRK13549 84 IAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLR-----AQKLLAQL--KLDINPATPVGNLGLGQQQLVEIAK 156 (506)
T ss_pred eEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHH-----HHHHHHHc--CCCCCcccchhhCCHHHHHHHHHHH
Confidence 999999998886 4999999876321 122222111 22333333 3332334445689999999999999
Q ss_pred HHhCCCCCC
Q 007122 609 AFLKAPPIL 617 (617)
Q Consensus 609 All~~p~IL 617 (617)
||+.+|+||
T Consensus 157 al~~~p~ll 165 (506)
T PRK13549 157 ALNKQARLL 165 (506)
T ss_pred HHhcCCCEE
Confidence 999999975
No 279
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=2.7e-28 Score=226.16 Aligned_cols=156 Identities=29% Similarity=0.517 Sum_probs=126.2
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHH-hcceE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~l-r~~i~ 536 (617)
.+..+|+..+|. .++|++|+||++++||.|++.||+|+||||.+.++.|+.+|++|+|.+||.|+..++.... |-.||
T Consensus 4 ~L~a~~l~K~y~-kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 4 TLVAENLAKSYK-KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred EEEehhhhHhhC-CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence 578899999995 5689999999999999999999999999999999999999999999999999999998865 45699
Q ss_pred EEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCC
Q 007122 537 VVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (617)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~ 615 (617)
|+|||+.+|.+ |+.|||..--+ ..+.+...+-++..+++.++.+ .+...-...|..||||||.|+.|||||..+|+
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vlE-~~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~ 159 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVLE-IREKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAANPK 159 (243)
T ss_pred cccccchHhhcCcHHHHHHHHHh-hhhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhcCCC
Confidence 99999999955 99999975432 2222222333333344444433 24444556789999999999999999999998
Q ss_pred CC
Q 007122 616 IL 617 (617)
Q Consensus 616 IL 617 (617)
.+
T Consensus 160 fi 161 (243)
T COG1137 160 FI 161 (243)
T ss_pred EE
Confidence 53
No 280
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3e-27 Score=263.07 Aligned_cols=152 Identities=20% Similarity=0.328 Sum_probs=119.6
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHH-HhcceE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES-LRKSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~-lr~~i~ 536 (617)
.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++++
T Consensus 5 ~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 5 YISMAGIGKSFG-PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred eEEEeeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence 489999999996 457999999999999999999999999999999999999999999999999998887654 456799
Q ss_pred EEccCCCcccc-cHHHHHhcCCC------C---CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 007122 537 VVPQDTVLFND-TIFHNIRYGRL------S---ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606 (617)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~------~---~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlai 606 (617)
||+|++.+|.. |++||+.++.. . .+.++..+ .+.+.++.+ |++......-.+||||||||++|
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv~i 156 (510)
T PRK09700 84 IIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV-----RAAMMLLRV--GLKVDLDEKVANLSISHKQMLEI 156 (510)
T ss_pred EEeecccccCCCcHHHHhhhccccccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 99999988864 99999987531 1 01112111 112223322 22222333446799999999999
Q ss_pred HHHHhCCCCCC
Q 007122 607 ARAFLKAPPIL 617 (617)
Q Consensus 607 ARAll~~p~IL 617 (617)
||||+.+|++|
T Consensus 157 a~al~~~p~ll 167 (510)
T PRK09700 157 AKTLMLDAKVI 167 (510)
T ss_pred HHHHhcCCCEE
Confidence 99999999975
No 281
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.94 E-value=8.3e-27 Score=219.96 Aligned_cols=103 Identities=34% Similarity=0.549 Sum_probs=96.3
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHH-HHhcceEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE-SLRKSIGV 537 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~-~lr~~i~~ 537 (617)
|+++|++++|++ .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.. ..+++++|
T Consensus 1 l~~~~l~~~~~~-~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~ 79 (163)
T cd03216 1 LELRGITKRFGG-VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAM 79 (163)
T ss_pred CEEEEEEEEECC-eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEE
Confidence 579999999974 5799999999999999999999999999999999999999999999999999988764 56778999
Q ss_pred EccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 538 VPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 538 V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
++| ||||||||++||||++++|++|
T Consensus 80 ~~q-------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 80 VYQ-------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred EEe-------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 999 9999999999999999999975
No 282
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.94 E-value=9.8e-27 Score=258.23 Aligned_cols=152 Identities=25% Similarity=0.346 Sum_probs=119.6
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHH-HhcceE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES-LRKSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~-lr~~i~ 536 (617)
.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++++
T Consensus 4 ~i~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 4 LLQLKGIDKAFP-GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred eEEEeeeEEEeC-CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 489999999996 467999999999999999999999999999999999999999999999999987766544 467899
Q ss_pred EEccCCCccc-ccHHHHHhcCCCC------CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 007122 537 VVPQDTVLFN-DTIFHNIRYGRLS------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (617)
Q Consensus 537 ~V~Qd~~LF~-gTIreNI~~g~~~------~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARA 609 (617)
||+|++.+|. -|++||+.++... .+.++..+. +.+.++.+ |+.......-.+||||||||++||||
T Consensus 83 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~a 155 (501)
T PRK10762 83 IIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAE-----ADKLLARL--NLRFSSDKLVGELSIGEQQMVEIAKV 155 (501)
T ss_pred EEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHH-----HHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHH
Confidence 9999998886 4999999886321 122222111 22233332 22222233445799999999999999
Q ss_pred HhCCCCCC
Q 007122 610 FLKAPPIL 617 (617)
Q Consensus 610 ll~~p~IL 617 (617)
|+.+|++|
T Consensus 156 l~~~p~ll 163 (501)
T PRK10762 156 LSFESKVI 163 (501)
T ss_pred HhcCCCEE
Confidence 99999975
No 283
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.94 E-value=7.5e-27 Score=258.64 Aligned_cols=149 Identities=27% Similarity=0.399 Sum_probs=119.2
Q ss_pred EEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCH-HHHhcceEEEc
Q 007122 461 FDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIGVVP 539 (617)
Q Consensus 461 ~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~-~~lr~~i~~V~ 539 (617)
++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. +.++++++|||
T Consensus 1 ~~nl~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFP-GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEeC-CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 468999996 4679999999999999999999999999999999999999999999999999976654 34677899999
Q ss_pred cCCCccc-ccHHHHHhcCCC---C--CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCC
Q 007122 540 QDTVLFN-DTIFHNIRYGRL---S--ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (617)
Q Consensus 540 Qd~~LF~-gTIreNI~~g~~---~--~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~ 613 (617)
|++.+|. .|++||+.++.. . .+.++..+ .+.+.++.+ |++........+||||||||++|||||+++
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~~~ 152 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFSYN 152 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHHhC
Confidence 9998775 599999987632 1 12222222 223344443 444444556678999999999999999999
Q ss_pred CCCC
Q 007122 614 PPIL 617 (617)
Q Consensus 614 p~IL 617 (617)
|++|
T Consensus 153 p~ll 156 (491)
T PRK10982 153 AKIV 156 (491)
T ss_pred CCEE
Confidence 9985
No 284
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.94 E-value=1.4e-26 Score=233.63 Aligned_cols=142 Identities=29% Similarity=0.399 Sum_probs=114.1
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
++++||+++ .+|+|+||+|++||+++|+|+||||||||+++|+|+++ .+|+|.+||.++.+.+...+++.++||
T Consensus 1 ~~~~~l~~~-----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 1 MQLNDVAVS-----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred Ccccccchh-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEe
Confidence 357788875 27999999999999999999999999999999999986 599999999999988888888899999
Q ss_pred ccCCC-cccccHHHHHhcCCCC-CCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhC
Q 007122 539 PQDTV-LFNDTIFHNIRYGRLS-ATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612 (617)
Q Consensus 539 ~Qd~~-LF~gTIreNI~~g~~~-~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~ 612 (617)
||++. .+..|++||+.++.+. .+. +++.++++..++ +.........||||||||++||||++.
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGL-----------DDKLGRSVNQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCC-----------HhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 99985 5578999999987432 111 223344444443 333444567899999999999999997
Q ss_pred -------CCCCC
Q 007122 613 -------APPIL 617 (617)
Q Consensus 613 -------~p~IL 617 (617)
+|++|
T Consensus 144 ~~~~~~p~p~ll 155 (248)
T PRK03695 144 VWPDINPAGQLL 155 (248)
T ss_pred cccccCCCCCEE
Confidence 56764
No 285
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.94 E-value=1.2e-26 Score=232.55 Aligned_cols=134 Identities=26% Similarity=0.386 Sum_probs=104.7
Q ss_pred cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc-cCCCcc-cccH
Q 007122 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP-QDTVLF-NDTI 549 (617)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~-Qd~~LF-~gTI 549 (617)
+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+. ...++++++|++ |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4799999999999999999999999999999999999999999999999987653 346778999997 666676 5799
Q ss_pred HHHHhcCCC--CCCHHHHHH----HHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 550 FHNIRYGRL--SATEEEVYD----AARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 550 reNI~~g~~--~~~de~i~~----a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
+||+.+... ..++++..+ +++..++ ++..|+. ...||||||||++||||++.+|++|
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-------~~~~~~~----~~~LS~G~~qrl~la~al~~~p~ll 175 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDL-------EELLDTP----VRQLSLGQRMRAEIAAALLHEPEIL 175 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------hhHhcCC----hhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999976421 223333322 2222222 2233443 4579999999999999999999975
No 286
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.2e-26 Score=261.03 Aligned_cols=149 Identities=29% Similarity=0.384 Sum_probs=118.7
Q ss_pred ceEEEeEEEeecC----------CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCC
Q 007122 458 SIQFDNVHFSYLT----------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT 527 (617)
Q Consensus 458 ~I~~~nvsF~Y~~----------~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~ 527 (617)
-|+++||++.|+. +.++|+|+||+|++||+++|||+||||||||+++|+|+.+|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 5999999999962 146999999999999999999999999999999999999999999999999998776
Q ss_pred HH---HHhcceEEEccCCC--cc-cccHHHHHhcCC--CCC-CH----HHHHHHHHHHcHH-HHHHhCCCCccccccCCC
Q 007122 528 LE---SLRKSIGVVPQDTV--LF-NDTIFHNIRYGR--LSA-TE----EEVYDAARRAAIH-DTIMNFPAKYSTVVGERG 593 (617)
Q Consensus 528 ~~---~lr~~i~~V~Qd~~--LF-~gTIreNI~~g~--~~~-~d----e~i~~a~~~a~l~-~~I~~lp~GldT~vge~G 593 (617)
.. .+|++|+||+|++. ++ ..|+.||+.++. ... .. +++.+.++..++. +. ....-
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~-----------~~~~~ 461 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEH-----------AWRYP 461 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHH-----------hhCCc
Confidence 43 46778999999983 66 469999997531 011 12 2344444444442 22 22334
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCC
Q 007122 594 LKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 594 ~~LSGGQrQRlaiARAll~~p~IL 617 (617)
..||||||||++|||||+.+|++|
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~ll 485 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVI 485 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEE
Confidence 579999999999999999999985
No 287
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.94 E-value=2.1e-26 Score=262.05 Aligned_cols=153 Identities=29% Similarity=0.466 Sum_probs=125.2
Q ss_pred ceEEEeEEEeecCC---cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHH---
Q 007122 458 SIQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL--- 531 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~l--- 531 (617)
.|+++|++++|+++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 58999999999742 479999999999999999999999999999999999999999999999999999887664
Q ss_pred -hcceEEEccCCCccc-ccHHHHHhcCCC--CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 007122 532 -RKSIGVVPQDTVLFN-DTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALA 607 (617)
Q Consensus 532 -r~~i~~V~Qd~~LF~-gTIreNI~~g~~--~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiA 607 (617)
|++++|++|++.+|+ .|+.||+.++.. ..+.++ .+..+++.++.+ |++..+.....+|||||+||++||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~-----~~~~~~~~l~~l--gl~~~~~~~~~~LS~Gq~qrv~LA 156 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQ-----RLLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIA 156 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHH-----HHHHHHHHHHHC--CChhhhcCCcccCCHHHHHHHHHH
Confidence 578999999999996 599999986421 112111 122233444443 455555566679999999999999
Q ss_pred HHHhCCCCCC
Q 007122 608 RAFLKAPPIL 617 (617)
Q Consensus 608 RAll~~p~IL 617 (617)
|||+++|++|
T Consensus 157 raL~~~P~lL 166 (648)
T PRK10535 157 RALMNGGQVI 166 (648)
T ss_pred HHHhcCCCEE
Confidence 9999999975
No 288
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.94 E-value=2.9e-26 Score=228.70 Aligned_cols=127 Identities=33% Similarity=0.465 Sum_probs=102.5
Q ss_pred ceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCccc-ccHHHHH
Q 007122 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN-DTIFHNI 553 (617)
Q Consensus 475 L~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~-gTIreNI 553 (617)
|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+.. .+||+|++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~-----~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPD-----RMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh-----heEEecCcccCCCCCHHHHH
Confidence 5799999999999999999999999999999999999999999999998765542 489999999997 6999999
Q ss_pred hcCC----CCCCHHH----HHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 554 RYGR----LSATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 554 ~~g~----~~~~de~----i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
.++. +..++++ +.+.++..++.+. .......||||||||++|||||+.+|++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~al~~~p~ll 136 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEA-----------ADKRPGQLSGGMKQRVAIARALSIRPKVL 136 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHH-----------HcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 7641 2233322 3344444444332 33345679999999999999999999975
No 289
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.2e-26 Score=214.11 Aligned_cols=144 Identities=28% Similarity=0.454 Sum_probs=115.3
Q ss_pred ceEEEeEEEeecCC-cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 007122 458 SIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~ 536 (617)
.+..++++.+|+.. .++|+|+|++|.+||.++++||||||||||+++++||.+|..|+|.+||.++..-..+ =|
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgae-----rg 77 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAE-----RG 77 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCcc-----ce
Confidence 35677889999743 4699999999999999999999999999999999999999999999999988765533 39
Q ss_pred EEccCCCccc-ccHHHHHhcCCC--CCCHHHH----HHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 007122 537 VVPQDTVLFN-DTIFHNIRYGRL--SATEEEV----YDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (617)
Q Consensus 537 ~V~Qd~~LF~-gTIreNI~~g~~--~~~de~i----~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARA 609 (617)
+|+|++-|+. -|+.||+.||-. .++.++. .+.+..++|.++= -..-..||||||||+.||||
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~-----------~~~i~qLSGGmrQRvGiARA 146 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAE-----------HKYIWQLSGGMRQRVGIARA 146 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccccc-----------ccceEeecchHHHHHHHHHH
Confidence 9999999985 589999999842 3343332 3333444544432 12345799999999999999
Q ss_pred HhCCCCCC
Q 007122 610 FLKAPPIL 617 (617)
Q Consensus 610 ll~~p~IL 617 (617)
|..+|+.|
T Consensus 147 La~eP~~L 154 (259)
T COG4525 147 LAVEPQLL 154 (259)
T ss_pred hhcCcceE
Confidence 99999875
No 290
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.93 E-value=9.3e-27 Score=263.75 Aligned_cols=151 Identities=28% Similarity=0.425 Sum_probs=121.3
Q ss_pred ceEEEeEEEeec--------CCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCC---CCeEEECCEeCCCC
Q 007122 458 SIQFDNVHFSYL--------TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQDICEV 526 (617)
Q Consensus 458 ~I~~~nvsF~Y~--------~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~---~G~I~idG~~i~~~ 526 (617)
+++|.++. +++ .++++|+|+|++|+|||.+||+||||||||||+++|+|..+|. +|+|.+||.++.
T Consensus 17 ~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~-- 93 (617)
T TIGR00955 17 DGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID-- 93 (617)
T ss_pred cchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC--
Confidence 45666655 442 2468999999999999999999999999999999999999885 899999999875
Q ss_pred CHHHHhcceEEEccCCCccc-ccHHHHHhcCCC-----CCCHHHHHHHHHHHcHHHHHHh--CCCCccccccCC--CCCC
Q 007122 527 TLESLRKSIGVVPQDTVLFN-DTIFHNIRYGRL-----SATEEEVYDAARRAAIHDTIMN--FPAKYSTVVGER--GLKL 596 (617)
Q Consensus 527 ~~~~lr~~i~~V~Qd~~LF~-gTIreNI~~g~~-----~~~de~i~~a~~~a~l~~~I~~--lp~GldT~vge~--G~~L 596 (617)
...+|+.++||+|++.+|. .|++|||.|+.. +.+.++. ...+++.++. |++..||.+|+. +..|
T Consensus 94 -~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~~L 167 (617)
T TIGR00955 94 -AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEK-----RERVDEVLQALGLRKCANTRIGVPGRVKGL 167 (617)
T ss_pred -HHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHH-----HHHHHHHHHHcCchhcCcCccCCCCCCCCc
Confidence 4678899999999999995 599999987531 1233322 2233444554 455789999985 4789
Q ss_pred ChHHHHHHHHHHHHhCCCCCC
Q 007122 597 SGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 597 SGGQrQRlaiARAll~~p~IL 617 (617)
|||||||++|||||+.+|++|
T Consensus 168 SgGqrkRvsia~aL~~~p~vl 188 (617)
T TIGR00955 168 SGGERKRLAFASELLTDPPLL 188 (617)
T ss_pred CcchhhHHHHHHHHHcCCCEE
Confidence 999999999999999999985
No 291
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.93 E-value=4.9e-26 Score=252.80 Aligned_cols=151 Identities=22% Similarity=0.354 Sum_probs=118.1
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC--CCCeEEECCEeCCCCCHHH-Hhcce
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT--HSGSIRIDGQDICEVTLES-LRKSI 535 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p--~~G~I~idG~~i~~~~~~~-lr~~i 535 (617)
|+++|++++|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++...+... +++++
T Consensus 2 l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 2 LEMKGIVKTFG-GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred EEEEeEEEEeC-CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 78999999996 45799999999999999999999999999999999999987 7999999999998877654 46789
Q ss_pred EEEccCCCccc-ccHHHHHhcCCCC------CCHHHHHHHHHHHcHHHHHHhCCCCccccc-cCCCCCCChHHHHHHHHH
Q 007122 536 GVVPQDTVLFN-DTIFHNIRYGRLS------ATEEEVYDAARRAAIHDTIMNFPAKYSTVV-GERGLKLSGGEKQRVALA 607 (617)
Q Consensus 536 ~~V~Qd~~LF~-gTIreNI~~g~~~------~~de~i~~a~~~a~l~~~I~~lp~GldT~v-ge~G~~LSGGQrQRlaiA 607 (617)
+||||++.+|. -|++||+.++... .+.++..+ .+++.++.+ |++... ......||||||||++||
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~iA 153 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLREL--QLDADNVTRPVGDYGGGQQQLVEIA 153 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccCchhhCCHHHHHHHHHH
Confidence 99999998886 4999999876321 12222211 122334433 222111 122457999999999999
Q ss_pred HHHhCCCCCC
Q 007122 608 RAFLKAPPIL 617 (617)
Q Consensus 608 RAll~~p~IL 617 (617)
|||+.+|++|
T Consensus 154 ~al~~~p~ll 163 (500)
T TIGR02633 154 KALNKQARLL 163 (500)
T ss_pred HHHhhCCCEE
Confidence 9999999975
No 292
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.93 E-value=3.1e-26 Score=253.70 Aligned_cols=146 Identities=27% Similarity=0.283 Sum_probs=121.2
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 3 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRLSD-TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEcCC-eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 3899999999963 569999999999999999999999999999999999999999999999988877777777888999
Q ss_pred EccCCCc---------ccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 007122 538 VPQDTVL---------FNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (617)
Q Consensus 538 V~Qd~~L---------F~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiAR 608 (617)
++|++.+ +..|++||+.++. ..++++.++++..++.+.. ...-..||||||||++|||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~ 148 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEV--KDPARCEQLAQQFGITALL-----------DRRFKYLSTGETRKTLLCQ 148 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccch--hHHHHHHHHHHHcCCHhhh-----------hCCcccCCHHHHHHHHHHH
Confidence 9998753 2468999986542 1234556666666654432 2344679999999999999
Q ss_pred HHhCCCCCC
Q 007122 609 AFLKAPPIL 617 (617)
Q Consensus 609 All~~p~IL 617 (617)
||+.+|++|
T Consensus 149 al~~~p~ll 157 (490)
T PRK10938 149 ALMSEPDLL 157 (490)
T ss_pred HHHcCCCEE
Confidence 999999975
No 293
>PLN03211 ABC transporter G-25; Provisional
Probab=99.93 E-value=9.3e-26 Score=255.76 Aligned_cols=138 Identities=32% Similarity=0.492 Sum_probs=111.7
Q ss_pred CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCC--CCeEEECCEeCCCCCHHHHhcceEEEccCCCccc-c
Q 007122 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH--SGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN-D 547 (617)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~--~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~-g 547 (617)
++++|+|+|+++++||++||+||||||||||+++|+|+.+|+ +|+|.+||.++. ...+++++||+|++.+|. .
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~l 155 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHL 155 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcC
Confidence 356999999999999999999999999999999999999885 999999999874 245678999999999995 5
Q ss_pred cHHHHHhcCC----C-CCCHHHHHHHHHHHcHHHHHH--hCCCCccccccCC-CCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 548 TIFHNIRYGR----L-SATEEEVYDAARRAAIHDTIM--NFPAKYSTVVGER-GLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 548 TIreNI~~g~----~-~~~de~i~~a~~~a~l~~~I~--~lp~GldT~vge~-G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
|++||+.+.. + +.++++..+.+ ++.++ .|++..||.+|++ ...||||||||++|||||+++|+||
T Consensus 156 TV~E~l~~~a~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iL 228 (659)
T PLN03211 156 TVRETLVFCSLLRLPKSLTKQEKILVA-----ESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 228 (659)
T ss_pred CHHHHHHHHHHhCCCCCCCHHHHHHHH-----HHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEE
Confidence 9999998742 2 23444332222 23333 3445569999864 6789999999999999999999985
No 294
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.93 E-value=5.2e-26 Score=254.10 Aligned_cols=149 Identities=26% Similarity=0.445 Sum_probs=117.0
Q ss_pred ceEEEeEEEeecC----------CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCC
Q 007122 458 SIQFDNVHFSYLT----------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT 527 (617)
Q Consensus 458 ~I~~~nvsF~Y~~----------~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~ 527 (617)
.|+++|++++|+. ++++|+|+||+|++||++||+|+||||||||+++|+|++ |++|+|.+||.++.+.+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 5999999999962 357999999999999999999999999999999999998 59999999999998776
Q ss_pred HHH---HhcceEEEccCC--Cccc-ccHHHHHhcCCC----CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCC
Q 007122 528 LES---LRKSIGVVPQDT--VLFN-DTIFHNIRYGRL----SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593 (617)
Q Consensus 528 ~~~---lr~~i~~V~Qd~--~LF~-gTIreNI~~g~~----~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G 593 (617)
... +|++++||||++ .+|. .|++||+.++.. ..+. +++.++++..++.+ .......
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~ 423 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP----------ETRHRYP 423 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCH----------HHHhcCC
Confidence 543 477899999998 3665 599999986421 1121 22333333333321 1233455
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCC
Q 007122 594 LKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 594 ~~LSGGQrQRlaiARAll~~p~IL 617 (617)
.+||||||||++|||||+.+|++|
T Consensus 424 ~~LSgG~~qrv~la~al~~~p~ll 447 (529)
T PRK15134 424 AEFSGGQRQRIAIARALILKPSLI 447 (529)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEE
Confidence 689999999999999999999985
No 295
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.93 E-value=4.7e-26 Score=227.33 Aligned_cols=134 Identities=26% Similarity=0.375 Sum_probs=104.1
Q ss_pred cceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC----CCCeEEECCEeCCCCCHHHHhcceEEEccCCC-ccc--
Q 007122 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT----HSGSIRIDGQDICEVTLESLRKSIGVVPQDTV-LFN-- 546 (617)
Q Consensus 474 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p----~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~-LF~-- 546 (617)
+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.+. +..+++++||+|++. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57999999999999999999999999999999999999 899999999998754 233468999999995 343
Q ss_pred ccHHHHHhcCCC--CC-C---HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 547 DTIFHNIRYGRL--SA-T---EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 547 gTIreNI~~g~~--~~-~---de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
.|+.||+.+... .. . ++++.++++..++. ++ ++........||||||||++||||++++|++|
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vl 147 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLP-------DP-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFL 147 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCC-------ch-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 589999864311 11 1 22344444444443 11 23455667889999999999999999999975
No 296
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.93 E-value=9.3e-26 Score=255.88 Aligned_cols=152 Identities=26% Similarity=0.372 Sum_probs=116.4
Q ss_pred ceEEEeEEEeecC---CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCC----------
Q 007122 458 SIQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC---------- 524 (617)
Q Consensus 458 ~I~~~nvsF~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~---------- 524 (617)
-|+++|++++|+. +.++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 6999999999963 247999999999999999999999999999999999999999999999998552
Q ss_pred CCCHH---HHh-cceEEEccCC--Cccc-ccHHHHHhcCC---CCCCHH----HHHHHHHHHcHHHHHHhCCCCcccccc
Q 007122 525 EVTLE---SLR-KSIGVVPQDT--VLFN-DTIFHNIRYGR---LSATEE----EVYDAARRAAIHDTIMNFPAKYSTVVG 590 (617)
Q Consensus 525 ~~~~~---~lr-~~i~~V~Qd~--~LF~-gTIreNI~~g~---~~~~de----~i~~a~~~a~l~~~I~~lp~GldT~vg 590 (617)
+.+.. .+| ++|+||+|+| .++. -|++|||.++. ...+.+ ++.++++..++. + .+....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~-------~-~~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIP-------E-AQTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCC-------C-hhhHHh
Confidence 22322 333 5799999998 5665 59999998642 112222 233334433331 1 012244
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 591 ERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 591 e~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
..-.+||||||||++|||||+.+|++|
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lL 190 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVL 190 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEE
Confidence 556789999999999999999999985
No 297
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=6.1e-26 Score=223.94 Aligned_cols=133 Identities=38% Similarity=0.579 Sum_probs=118.0
Q ss_pred cceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHH----hcceEEEccCCCcc-ccc
Q 007122 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL----RKSIGVVPQDTVLF-NDT 548 (617)
Q Consensus 474 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~l----r~~i~~V~Qd~~LF-~gT 548 (617)
-++|+||+|+.||+..|.|-||||||||++++.||++|+.|+|++||.|+..++.++| |+++++|+|..-|| .-|
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 3889999999999999999999999999999999999999999999999999998775 45799999999988 679
Q ss_pred HHHHHhcCCC--CCC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 549 IFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 549 IreNI~~g~~--~~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
+.||..||-+ ..+ ++...++++.+||++|=.+.| ..||||++||+.|||||..||+||
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp-----------~eLSGGMqQRVGLARAla~~~~Il 186 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP-----------NELSGGMQQRVGLARALANDPDIL 186 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-----------ccccchHHHHHHHHHHHccCCCEE
Confidence 9999999953 233 344567788889988877766 469999999999999999999986
No 298
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=6.5e-26 Score=220.09 Aligned_cols=130 Identities=34% Similarity=0.560 Sum_probs=116.9
Q ss_pred eeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCC----HHHHhcceEEEccCCCcc-cccHHH
Q 007122 477 GVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT----LESLRKSIGVVPQDTVLF-NDTIFH 551 (617)
Q Consensus 477 ~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~----~~~lr~~i~~V~Qd~~LF-~gTIre 551 (617)
++||+.+.-..+||-|+||||||||+++++|+..|++|.|.+||.-+.|-. ..--+++||||+||.-|| .-|+|-
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 678888887899999999999999999999999999999999998876543 445677999999999999 679999
Q ss_pred HHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 552 NIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 552 NI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
|++||....+.++..+.+..-|+...++++| ..||||||||+||+|||+.+|++|
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LL 150 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELL 150 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCee
Confidence 9999987777788888899889988888877 579999999999999999999986
No 299
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.93 E-value=7.5e-26 Score=252.40 Aligned_cols=154 Identities=27% Similarity=0.440 Sum_probs=115.1
Q ss_pred ceEEEeEEEeecC----CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEEC-CEe---CCCCC--
Q 007122 458 SIQFDNVHFSYLT----ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID-GQD---ICEVT-- 527 (617)
Q Consensus 458 ~I~~~nvsF~Y~~----~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~id-G~~---i~~~~-- 527 (617)
.|+++||+++|++ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++ |.+ +.+.+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999963 2579999999999999999999999999999999999999999999996 643 33332
Q ss_pred -HHHHhcceEEEccCCCccc-ccHHHHHhcCCC-CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHH
Q 007122 528 -LESLRKSIGVVPQDTVLFN-DTIFHNIRYGRL-SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGE 600 (617)
Q Consensus 528 -~~~lr~~i~~V~Qd~~LF~-gTIreNI~~g~~-~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQ 600 (617)
...+|++++||||++.+|. .|++||+.++.. .... +++.++++..++.+. ..+.........|||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~~LSgGq 432 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEE------KAEEILDKYPDELSEGE 432 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCc------cchhhhhCChhhCCHHH
Confidence 2345778999999998886 599999975310 1111 223333333333210 00012334456799999
Q ss_pred HHHHHHHHHHhCCCCCC
Q 007122 601 KQRVALARAFLKAPPIL 617 (617)
Q Consensus 601 rQRlaiARAll~~p~IL 617 (617)
|||++|||||+.+|++|
T Consensus 433 ~qrv~laral~~~p~lL 449 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIV 449 (520)
T ss_pred HHHHHHHHHHhcCCCEE
Confidence 99999999999999975
No 300
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.93 E-value=1.1e-25 Score=251.48 Aligned_cols=152 Identities=28% Similarity=0.455 Sum_probs=117.6
Q ss_pred ceEEEeEEEeecC---CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC-----CCCeEEECCEeCCCCCHH
Q 007122 458 SIQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEVTLE 529 (617)
Q Consensus 458 ~I~~~nvsF~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p-----~~G~I~idG~~i~~~~~~ 529 (617)
.|+++|++++|++ +.++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 5899999999973 25799999999999999999999999999999999999987 799999999999887754
Q ss_pred H---Hh-cceEEEccCCC--cc-cccHHHHHhcCC---CCCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCC
Q 007122 530 S---LR-KSIGVVPQDTV--LF-NDTIFHNIRYGR---LSATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLK 595 (617)
Q Consensus 530 ~---lr-~~i~~V~Qd~~--LF-~gTIreNI~~g~---~~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~ 595 (617)
+ +| ++++||+|++. ++ ..|++||+.++. ...+. +++.++++..++.+.. ........+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhhCCcc
Confidence 3 33 57999999985 44 358999986421 11222 2344444444442210 112345568
Q ss_pred CChHHHHHHHHHHHHhCCCCCC
Q 007122 596 LSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 596 LSGGQrQRlaiARAll~~p~IL 617 (617)
||||||||++|||||+.+|++|
T Consensus 157 LSgGe~qrv~iAraL~~~p~ll 178 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELL 178 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999999985
No 301
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.6e-26 Score=212.26 Aligned_cols=147 Identities=28% Similarity=0.455 Sum_probs=120.3
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|++.+++.+|++-..+++|+||+++.||.++|.|++||||||+++.|+.|..|++|.|.+||.|.... +...|++||++
T Consensus 2 l~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IGVl 80 (245)
T COG4555 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIGVL 80 (245)
T ss_pred eeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhccee
Confidence 68899999998755789999999999999999999999999999999999999999999999998774 56778899999
Q ss_pred ccCCCcc-cccHHHHHhcCCC--CCCHH----HHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh
Q 007122 539 PQDTVLF-NDTIFHNIRYGRL--SATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (617)
Q Consensus 539 ~Qd~~LF-~gTIreNI~~g~~--~~~de----~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll 611 (617)
+-+.-|+ .-|.+|||.|+.. +.++. ++.+.-+..++.+.+ ..+-.+||-|+|||++|||||+
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~-----------~rRv~~~S~G~kqkV~iARAlv 149 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYL-----------DRRVGEFSTGMKQKVAIARALV 149 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHH-----------HHHHhhhchhhHHHHHHHHHHh
Confidence 9887788 4599999987521 22332 333333444444443 3344569999999999999999
Q ss_pred CCCCCC
Q 007122 612 KAPPIL 617 (617)
Q Consensus 612 ~~p~IL 617 (617)
+||+|+
T Consensus 150 h~P~i~ 155 (245)
T COG4555 150 HDPSIL 155 (245)
T ss_pred cCCCeE
Confidence 999975
No 302
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=7.7e-26 Score=251.74 Aligned_cols=150 Identities=22% Similarity=0.359 Sum_probs=115.8
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCH-HHHhcceE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~-~~lr~~i~ 536 (617)
.|+++|+++.|. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +.++++++
T Consensus 265 ~l~~~~l~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~ 341 (510)
T PRK09700 265 VFEVRNVTSRDR---KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA 341 (510)
T ss_pred EEEEeCccccCC---CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcE
Confidence 599999999763 48999999999999999999999999999999999999999999999999876554 45677899
Q ss_pred EEccCC---Cccc-ccHHHHHhcCCCC-----------CCHHHHHHHHHHHcHHHHHHhCCCCcc-ccccCCCCCCChHH
Q 007122 537 VVPQDT---VLFN-DTIFHNIRYGRLS-----------ATEEEVYDAARRAAIHDTIMNFPAKYS-TVVGERGLKLSGGE 600 (617)
Q Consensus 537 ~V~Qd~---~LF~-gTIreNI~~g~~~-----------~~de~i~~a~~~a~l~~~I~~lp~Gld-T~vge~G~~LSGGQ 600 (617)
||||++ .+|. -|++||+.++... ...++. ...+.+.++.+ |+. -.....-..|||||
T Consensus 342 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq 414 (510)
T PRK09700 342 YITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE-----QRTAENQRELL--ALKCHSVNQNITELSGGN 414 (510)
T ss_pred EccCccccCCCcCCCcHHHHhccccccccccccccccccChHHH-----HHHHHHHHHhc--CCCCCCccCccccCChHH
Confidence 999984 5665 5999999875310 011111 11223344443 232 12334445799999
Q ss_pred HHHHHHHHHHhCCCCCC
Q 007122 601 KQRVALARAFLKAPPIL 617 (617)
Q Consensus 601 rQRlaiARAll~~p~IL 617 (617)
|||++|||||+.+|+||
T Consensus 415 ~qrv~lAral~~~p~lL 431 (510)
T PRK09700 415 QQKVLISKWLCCCPEVI 431 (510)
T ss_pred HHHHHHHHHHhcCCCEE
Confidence 99999999999999985
No 303
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=8e-26 Score=251.26 Aligned_cols=153 Identities=26% Similarity=0.397 Sum_probs=119.1
Q ss_pred ceEEEeEEEeecC--CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC-CCCCeEEECCEeCCCCCH-HHHhc
Q 007122 458 SIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-THSGSIRIDGQDICEVTL-ESLRK 533 (617)
Q Consensus 458 ~I~~~nvsF~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~-p~~G~I~idG~~i~~~~~-~~lr~ 533 (617)
.|+++|+++.|+. +.++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++...+. +.++.
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 5999999999952 4579999999999999999999999999999999999999 599999999999875543 35677
Q ss_pred ceEEEccCC---Ccc-cccHHHHHhcCCC-C------CCHHHHHHHHHHHcHHHHHHhCCCCccc-cccCCCCCCChHHH
Q 007122 534 SIGVVPQDT---VLF-NDTIFHNIRYGRL-S------ATEEEVYDAARRAAIHDTIMNFPAKYST-VVGERGLKLSGGEK 601 (617)
Q Consensus 534 ~i~~V~Qd~---~LF-~gTIreNI~~g~~-~------~~de~i~~a~~~a~l~~~I~~lp~GldT-~vge~G~~LSGGQr 601 (617)
.++||+|++ .+| +.|+.||+.++.. . .+.++ ....+++.++.+ |++. ........||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAA-----ELKTILESIQRL--KVKTASPELAIARLSGGNQ 411 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHH-----HHHHHHHHHHhc--CccCCCcccccccCCHHHH
Confidence 899999996 355 5699999986521 0 11111 112234455554 3322 23445578999999
Q ss_pred HHHHHHHHHhCCCCCC
Q 007122 602 QRVALARAFLKAPPIL 617 (617)
Q Consensus 602 QRlaiARAll~~p~IL 617 (617)
||++||||++.+|+||
T Consensus 412 qrv~lA~al~~~p~ll 427 (506)
T PRK13549 412 QKAVLAKCLLLNPKIL 427 (506)
T ss_pred HHHHHHHHHhhCCCEE
Confidence 9999999999999985
No 304
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.93 E-value=1.1e-25 Score=223.51 Aligned_cols=136 Identities=27% Similarity=0.285 Sum_probs=101.5
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
+.++|++.+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++... ....+
T Consensus 23 l~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~-- 94 (224)
T cd03220 23 LGILGRKGEVG-EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGG-- 94 (224)
T ss_pred hhhhhhhhhcC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----ccccc--
Confidence 67778888885 46799999999999999999999999999999999999999999999999876321 11111
Q ss_pred ccCCCcccccHHHHHhcCCC--CCCHHH----HHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhC
Q 007122 539 PQDTVLFNDTIFHNIRYGRL--SATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612 (617)
Q Consensus 539 ~Qd~~LF~gTIreNI~~g~~--~~~de~----i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~ 612 (617)
+..+.|++||+.++.. ..+.++ +.++++..++ ++..++.+ ..||||||||++||||+++
T Consensus 95 ----~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~----~~LSgG~~qrv~laral~~ 159 (224)
T cd03220 95 ----FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSEL-------GDFIDLPV----KTYSSGMKARLAFAIATAL 159 (224)
T ss_pred ----CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------hhhhhCCh----hhCCHHHHHHHHHHHHHhc
Confidence 2235799999986532 122222 2233333333 23333333 5799999999999999999
Q ss_pred CCCCC
Q 007122 613 APPIL 617 (617)
Q Consensus 613 ~p~IL 617 (617)
+|++|
T Consensus 160 ~p~ll 164 (224)
T cd03220 160 EPDIL 164 (224)
T ss_pred CCCEE
Confidence 99975
No 305
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.93 E-value=1.4e-25 Score=240.59 Aligned_cols=150 Identities=33% Similarity=0.429 Sum_probs=117.3
Q ss_pred cceEEEeEEEeecC------C----cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCC
Q 007122 457 GSIQFDNVHFSYLT------E----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~------~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~ 526 (617)
.-++++|++..|.. . ..+++|+||++++||++||||+||||||||+++|+|+.+|++|+|.++|.| -++
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~-~~~ 357 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-LDL 357 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc-ccc
Confidence 35889999999973 1 268999999999999999999999999999999999999999999999987 333
Q ss_pred C---HHHHhcceEEEccCCCcc---cccHHHHHhcC----CCCC---CHHHHHHHHHHHcHHHHHHhCCCCccccccCCC
Q 007122 527 T---LESLRKSIGVVPQDTVLF---NDTIFHNIRYG----RLSA---TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593 (617)
Q Consensus 527 ~---~~~lr~~i~~V~Qd~~LF---~gTIreNI~~g----~~~~---~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G 593 (617)
+ ....|+++-+|+|||+-- ..||.++|.-. .+.. ..+.+.+.++.+++.+. .....-
T Consensus 358 ~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~----------~l~ryP 427 (539)
T COG1123 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE----------FLDRYP 427 (539)
T ss_pred ccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHH----------HHhcCc
Confidence 3 445788999999999843 56999998521 1111 11234455555555431 233455
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCC
Q 007122 594 LKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 594 ~~LSGGQrQRlaiARAll~~p~IL 617 (617)
..||||||||+||||||..+|++|
T Consensus 428 ~elSGGQrQRvaIARALa~~P~ll 451 (539)
T COG1123 428 HELSGGQRQRVAIARALALEPKLL 451 (539)
T ss_pred hhcCcchhHHHHHHHHHhcCCCEE
Confidence 679999999999999999999975
No 306
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.92 E-value=2.2e-25 Score=270.97 Aligned_cols=149 Identities=26% Similarity=0.431 Sum_probs=123.7
Q ss_pred ceEEEeEEEeec---CCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC---CCCCeEEECCEeCCCCCHHHH
Q 007122 458 SIQFDNVHFSYL---TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD---THSGSIRIDGQDICEVTLESL 531 (617)
Q Consensus 458 ~I~~~nvsF~Y~---~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~---p~~G~I~idG~~i~~~~~~~l 531 (617)
.++++||+++|+ .++++|+|+|++|+|||++||+||||||||||+++|+|+.+ |++|+|.+||.++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 479999999995 24589999999999999999999999999999999999997 78899999999985 257
Q ss_pred hcceEEEccCCC-cccccHHHHHhcCC----C-CCCHHH----HHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHH
Q 007122 532 RKSIGVVPQDTV-LFNDTIFHNIRYGR----L-SATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEK 601 (617)
Q Consensus 532 r~~i~~V~Qd~~-LF~gTIreNI~~g~----~-~~~de~----i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQr 601 (617)
|++++||+|++. ++..|++||+.++. | +.++++ +.++++..++ .+-.|+.+|+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L-------~~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEM-------ESYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------hhhCCCeeCCCCCCCCHHHh
Confidence 889999999865 56789999998742 2 234433 3344444444 34579999999999999999
Q ss_pred HHHHHHHHHhCCCC-CC
Q 007122 602 QRVALARAFLKAPP-IL 617 (617)
Q Consensus 602 QRlaiARAll~~p~-IL 617 (617)
||++|||||+.+|+ ||
T Consensus 908 qRl~Ia~aL~~~P~~iL 924 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLL 924 (1394)
T ss_pred hHHHHHHHHHcCCCeEE
Confidence 99999999999997 53
No 307
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.92 E-value=3.5e-25 Score=248.38 Aligned_cols=146 Identities=26% Similarity=0.380 Sum_probs=114.5
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
-|+++|++++|++++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++ +.+|+|
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~~ 72 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVGY 72 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEEE
Confidence 589999999997456899999999999999999999999999999999999999999999975 247999
Q ss_pred EccCCCccc-ccHHHHHhcCCCC-----------------CCH---------HHHHHHHHHHcHH-------HHHHhCCC
Q 007122 538 VPQDTVLFN-DTIFHNIRYGRLS-----------------ATE---------EEVYDAARRAAIH-------DTIMNFPA 583 (617)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~~~-----------------~~d---------e~i~~a~~~a~l~-------~~I~~lp~ 583 (617)
|+|+|.+|+ .|++|||.++... ..+ +++.++++.++.+ +.++.+
T Consensus 73 v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 150 (552)
T TIGR03719 73 LPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL-- 150 (552)
T ss_pred EeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC--
Confidence 999999985 5999999875210 011 1244444444432 233333
Q ss_pred CccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 584 KYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 584 GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
|++ .......+||||||||++|||||+.+|++|
T Consensus 151 ~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lL 183 (552)
T TIGR03719 151 RCP-PWDADVTKLSGGERRRVALCRLLLSKPDML 183 (552)
T ss_pred CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 332 124456789999999999999999999975
No 308
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.92 E-value=1.8e-25 Score=224.81 Aligned_cols=129 Identities=25% Similarity=0.349 Sum_probs=103.9
Q ss_pred EeecCCcccceeeeEEEe-----CCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEcc
Q 007122 466 FSYLTERKILDGVSFVVP-----AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQ 540 (617)
Q Consensus 466 F~Y~~~~~vL~~isl~I~-----~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Q 540 (617)
|+|++..+.++|++|+++ +||+++|+|+||||||||+++|+|+++|++|+|.++|. +|+|+||
T Consensus 1 ~~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~q 68 (246)
T cd03237 1 YTYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKPQ 68 (246)
T ss_pred CCCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEecc
Confidence 689877778999999997 69999999999999999999999999999999999984 6999999
Q ss_pred CCC-cccccHHHHHhcCCCCCC--HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 541 DTV-LFNDTIFHNIRYGRLSAT--EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 541 d~~-LF~gTIreNI~~g~~~~~--de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
++. .++.|++||+.+...... .+...++++..++.+ ........||||||||++|||||+++|+++
T Consensus 69 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~-----------~~~~~~~~LSgGe~qrv~iaraL~~~p~ll 137 (246)
T cd03237 69 YIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQ-----------ILDREVPELSGGELQRVAIAACLSKDADIY 137 (246)
T ss_pred cccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHH-----------HhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 987 578999999976432111 222334444444433 333455679999999999999999999975
No 309
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.92 E-value=1.6e-25 Score=249.80 Aligned_cols=147 Identities=28% Similarity=0.449 Sum_probs=112.8
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCC--CCCCCeEEEC-----------------
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF--DTHSGSIRID----------------- 519 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~--~p~~G~I~id----------------- 519 (617)
|+++|++++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKFD-GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEEC-CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 57899999996 457999999999999999999999999999999999996 7999999997
Q ss_pred ------CEeCC-------CCC---HHHHhcceEEEccC-CCccc-ccHHHHHhcCCC--CCCH----HHHHHHHHHHcHH
Q 007122 520 ------GQDIC-------EVT---LESLRKSIGVVPQD-TVLFN-DTIFHNIRYGRL--SATE----EEVYDAARRAAIH 575 (617)
Q Consensus 520 ------G~~i~-------~~~---~~~lr~~i~~V~Qd-~~LF~-gTIreNI~~g~~--~~~d----e~i~~a~~~a~l~ 575 (617)
|.++. ..+ ...+|+.++||+|+ +.+|. .|++||+.++.. ..+. +++.++++..++.
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 33221 111 13467789999998 56775 599999976421 1222 2334444444443
Q ss_pred HHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 576 DTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 576 ~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
+. ....-..||||||||++|||||+.+|++|
T Consensus 160 ~~-----------~~~~~~~LSgGq~qrv~iA~al~~~p~ll 190 (520)
T TIGR03269 160 HR-----------ITHIARDLSGGEKQRVVLARQLAKEPFLF 190 (520)
T ss_pred hh-----------hhcCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 32 33445789999999999999999999985
No 310
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=1.4e-25 Score=220.42 Aligned_cols=119 Identities=31% Similarity=0.586 Sum_probs=101.7
Q ss_pred ceEEEeEEEeecCC--------cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHH
Q 007122 458 SIQFDNVHFSYLTE--------RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE 529 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~--------~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~ 529 (617)
-++++|++..|+.. ..+++|+||+|++||.++|||+|||||||+.++|+||++|++|+|+++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 47899999999732 26899999999999999999999999999999999999999999999999988776
Q ss_pred HHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHH-HHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 007122 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHD-TIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (617)
Q Consensus 530 ~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~-~I~~lp~GldT~vge~G~~LSGGQrQRlaiAR 608 (617)
.+...+++.+.++.+++.+ +..+.| ..||||||||++|||
T Consensus 82 ----------------------------~~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~IAR 122 (268)
T COG4608 82 ----------------------------KEERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGIAR 122 (268)
T ss_pred ----------------------------hhHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHHHH
Confidence 1223567888888888766 444433 579999999999999
Q ss_pred HHhCCCCCC
Q 007122 609 AFLKAPPIL 617 (617)
Q Consensus 609 All~~p~IL 617 (617)
||.-+|+++
T Consensus 123 ALal~P~li 131 (268)
T COG4608 123 ALALNPKLI 131 (268)
T ss_pred HHhhCCcEE
Confidence 999999874
No 311
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.92 E-value=3.1e-25 Score=246.37 Aligned_cols=153 Identities=25% Similarity=0.384 Sum_probs=117.4
Q ss_pred ceEEEeEEEeecC--CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC-CCCeEEECCEeCCCCCH-HHHhc
Q 007122 458 SIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIRIDGQDICEVTL-ESLRK 533 (617)
Q Consensus 458 ~I~~~nvsF~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p-~~G~I~idG~~i~~~~~-~~lr~ 533 (617)
.|+++|++++|+. +.++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 5999999999952 35799999999999999999999999999999999999996 89999999999875543 56788
Q ss_pred ceEEEccCC---Cccc-ccHHHHHhcCCCC-------CCHHHHHHHHHHHcHHHHHHhCCCCccc-cccCCCCCCChHHH
Q 007122 534 SIGVVPQDT---VLFN-DTIFHNIRYGRLS-------ATEEEVYDAARRAAIHDTIMNFPAKYST-VVGERGLKLSGGEK 601 (617)
Q Consensus 534 ~i~~V~Qd~---~LF~-gTIreNI~~g~~~-------~~de~i~~a~~~a~l~~~I~~lp~GldT-~vge~G~~LSGGQr 601 (617)
+++||||++ .+|. .|++||+.++... ...++ ....+.+.++.+ |+.. ........||||||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqk 409 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAA-----ELQIIGSAIQRL--KVKTASPFLPIGRLSGGNQ 409 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHH-----HHHHHHHHHHhc--CccCCCccCccccCCHHHH
Confidence 999999996 3554 6999999875210 11111 112233344443 2211 12334457999999
Q ss_pred HHHHHHHHHhCCCCCC
Q 007122 602 QRVALARAFLKAPPIL 617 (617)
Q Consensus 602 QRlaiARAll~~p~IL 617 (617)
||++||||++.+|++|
T Consensus 410 qrv~la~al~~~p~ll 425 (500)
T TIGR02633 410 QKAVLAKMLLTNPRVL 425 (500)
T ss_pred HHHHHHHHHhhCCCEE
Confidence 9999999999999975
No 312
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=9.3e-26 Score=217.06 Aligned_cols=153 Identities=25% Similarity=0.407 Sum_probs=123.3
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHH-hcceEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIGV 537 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~l-r~~i~~ 537 (617)
++++|++.+|. +-.+++|+||++++||+++|+||+||||||+++++.|+|+|++|+|.++|.|+..+++... |..|+-
T Consensus 5 L~v~~l~k~FG-Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~R 83 (250)
T COG0411 5 LEVRGLSKRFG-GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIAR 83 (250)
T ss_pred eeeccceeecC-CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcccee
Confidence 67899999996 4579999999999999999999999999999999999999999999999999999998875 556999
Q ss_pred EccCCCccc-ccHHHHHhcCCCC-----------CCHHHHHHHHHHH-cHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 007122 538 VPQDTVLFN-DTIFHNIRYGRLS-----------ATEEEVYDAARRA-AIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (617)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~~~-----------~~de~i~~a~~~a-~l~~~I~~lp~GldT~vge~G~~LSGGQrQRl 604 (617)
-+|.+.+|. .|+.||+..+... ....+-.++.++| .+.|++ |++-.-.+...+||+||+.||
T Consensus 84 TFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~v-----gL~~~a~~~A~~LsyG~qR~L 158 (250)
T COG0411 84 TFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV-----GLGELADRPAGNLSYGQQRRL 158 (250)
T ss_pred ecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHc-----CCchhhcchhhcCChhHhHHH
Confidence 999999995 5999999876210 0101112233333 233322 455555667778999999999
Q ss_pred HHHHHHhCCCCCC
Q 007122 605 ALARAFLKAPPIL 617 (617)
Q Consensus 605 aiARAll~~p~IL 617 (617)
.|||||..+|++|
T Consensus 159 EIArALa~~P~lL 171 (250)
T COG0411 159 EIARALATQPKLL 171 (250)
T ss_pred HHHHHHhcCCCEE
Confidence 9999999999986
No 313
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.92 E-value=1.4e-25 Score=226.49 Aligned_cols=144 Identities=23% Similarity=0.283 Sum_probs=109.8
Q ss_pred EeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEE-----------ECCEeCCCCCHHH
Q 007122 462 DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR-----------IDGQDICEVTLES 530 (617)
Q Consensus 462 ~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~-----------idG~~i~~~~~~~ 530 (617)
.||+|+|++.+++|+|+| .+++||+++|+|+||||||||+++|+|+++|++|+|. ++|+++.+...+.
T Consensus 4 ~~~~~~y~~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 378899975557999999 5999999999999999999999999999999999996 8899887764443
Q ss_pred Hhc--ceEEEccCCCcccccHHHHHhcCCCCCC-HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 007122 531 LRK--SIGVVPQDTVLFNDTIFHNIRYGRLSAT-EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALA 607 (617)
Q Consensus 531 lr~--~i~~V~Qd~~LF~gTIreNI~~g~~~~~-de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiA 607 (617)
.+. .+++++|++.++..++.+|+...-.... ++++.++++..+ ++..+.....+||||||||++||
T Consensus 83 ~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LS~G~~qrv~la 151 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLE-----------LRHVLDRNIDQLSGGELQRVAIA 151 (255)
T ss_pred hhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcC-----------CchhhcCChhhCCHHHHHHHHHH
Confidence 433 4788888877776666666543211111 233444444443 44445566779999999999999
Q ss_pred HHHhCCCCCC
Q 007122 608 RAFLKAPPIL 617 (617)
Q Consensus 608 RAll~~p~IL 617 (617)
||++++|+++
T Consensus 152 ral~~~p~il 161 (255)
T cd03236 152 AALARDADFY 161 (255)
T ss_pred HHHHhCCCEE
Confidence 9999999975
No 314
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.92 E-value=5.1e-25 Score=247.13 Aligned_cols=146 Identities=26% Similarity=0.408 Sum_probs=111.5
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++|++++|++++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+++|
T Consensus 6 ~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i~~ 74 (556)
T PRK11819 6 IYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKVGY 74 (556)
T ss_pred EEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEEE
Confidence 589999999997446899999999999999999999999999999999999999999999975 246999
Q ss_pred EccCCCcccc-cHHHHHhcCCCC----------------CCH----------HHHHHHHHHH-------cHHHHHHhCCC
Q 007122 538 VPQDTVLFND-TIFHNIRYGRLS----------------ATE----------EEVYDAARRA-------AIHDTIMNFPA 583 (617)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~~----------------~~d----------e~i~~a~~~a-------~l~~~I~~lp~ 583 (617)
|||+|.+++. |++||+.++... ..+ +++.++++.+ .+.+.++.+
T Consensus 75 v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 152 (556)
T PRK11819 75 LPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL-- 152 (556)
T ss_pred EecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC--
Confidence 9999999865 999999875210 000 1111112111 122333332
Q ss_pred CccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 584 KYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 584 GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
|++ .....-..||||||||++||||++.+|++|
T Consensus 153 gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vl 185 (556)
T PRK11819 153 RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDML 185 (556)
T ss_pred CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEE
Confidence 222 123445679999999999999999999985
No 315
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.92 E-value=2.4e-25 Score=221.01 Aligned_cols=122 Identities=30% Similarity=0.497 Sum_probs=99.3
Q ss_pred EEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCc---ccccHHHHHhcC
Q 007122 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVL---FNDTIFHNIRYG 556 (617)
Q Consensus 480 l~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~L---F~gTIreNI~~g 556 (617)
|+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++. ..+++++|+||++.+ |+.|+.||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998764 356789999999976 468999999765
Q ss_pred CC---------C-CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 557 RL---------S-ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 557 ~~---------~-~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
.. . ..++++.++++..++.++.+ .....||||||||++||||++++|++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~~p~ll 135 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELAD-----------RPVGELSGGQRQRVLVARALATRPSVL 135 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhc-----------CChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 21 1 12244666777777654432 233469999999999999999999985
No 316
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.92 E-value=4.6e-25 Score=268.94 Aligned_cols=149 Identities=23% Similarity=0.397 Sum_probs=123.7
Q ss_pred cceEEEeEEEeec-CCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 007122 457 GSIQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (617)
Q Consensus 457 ~~I~~~nvsF~Y~-~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i 535 (617)
..|+++|+++.|+ +++++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.|+.. +...+|+++
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcE
Confidence 3699999999996 35689999999999999999999999999999999999999999999999999975 566788999
Q ss_pred EEEccCCCccc-ccHHHHHhcCCC--CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 007122 536 GVVPQDTVLFN-DTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (617)
Q Consensus 536 ~~V~Qd~~LF~-gTIreNI~~g~~--~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiAR 608 (617)
|||||++.+|+ .|++|||.++.. ..+. +++.+.++..++ +........+||||||||++|||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL-----------~~~~~~~~~~LSGGqKQRLsLAr 1074 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGL-----------HHKRNEEAQDLSGGMQRKLSVAI 1074 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------chhhcCChhhCCHHHHHHHHHHH
Confidence 99999999996 599999986421 1222 234444444444 33344556789999999999999
Q ss_pred HHhCCCCCC
Q 007122 609 AFLKAPPIL 617 (617)
Q Consensus 609 All~~p~IL 617 (617)
||+.+|++|
T Consensus 1075 ALi~~PkVL 1083 (2272)
T TIGR01257 1075 AFVGDAKVV 1083 (2272)
T ss_pred HHHcCCCEE
Confidence 999999975
No 317
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=7.8e-25 Score=204.98 Aligned_cols=143 Identities=33% Similarity=0.520 Sum_probs=121.1
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|+.+|+|++-. ++.+|+++||+++|||.+||+||+|||||||+|.|+|...|++|++.+||.++.+..+.++-++-++.
T Consensus 2 i~a~nls~~~~-Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl 80 (259)
T COG4559 2 IRAENLSYSLA-GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL 80 (259)
T ss_pred eeeeeeEEEee-cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence 78899987663 67899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCc-ccccHHHHHhcCCC-C-----CCHHH--HHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 007122 539 PQDTVL-FNDTIFHNIRYGRL-S-----ATEEE--VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (617)
Q Consensus 539 ~Qd~~L-F~gTIreNI~~g~~-~-----~~de~--i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARA 609 (617)
||+..| |.-|++|-+.+|+- . ..+++ ..+++..+++..+-. ..=..|||||+||+.+||.
T Consensus 81 pQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~-----------R~y~~LSGGEqQRVqlARv 149 (259)
T COG4559 81 PQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAG-----------RDYRTLSGGEQQRVQLARV 149 (259)
T ss_pred ccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhc-----------cchhhcCchHHHHHHHHHH
Confidence 998875 89999999999852 1 12333 455666666554322 2346799999999999999
Q ss_pred HhCC
Q 007122 610 FLKA 613 (617)
Q Consensus 610 ll~~ 613 (617)
|..-
T Consensus 150 LaQl 153 (259)
T COG4559 150 LAQL 153 (259)
T ss_pred HHHc
Confidence 9764
No 318
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=7.9e-25 Score=244.66 Aligned_cols=145 Identities=23% Similarity=0.403 Sum_probs=110.7
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|+++|++|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. .+++||
T Consensus 2 l~i~~ls~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~ 69 (530)
T PRK15064 2 LSTANITMQFG-AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGKL 69 (530)
T ss_pred EEEEEEEEEeC-CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEEE
Confidence 78999999996 468999999999999999999999999999999999999999999999972 469999
Q ss_pred ccCCCccc-ccHHHHHhcCCCC----------------CCHH---HHHHH----------HHHHcHHHHHHhCCCCcccc
Q 007122 539 PQDTVLFN-DTIFHNIRYGRLS----------------ATEE---EVYDA----------ARRAAIHDTIMNFPAKYSTV 588 (617)
Q Consensus 539 ~Qd~~LF~-gTIreNI~~g~~~----------------~~de---~i~~a----------~~~a~l~~~I~~lp~GldT~ 588 (617)
+|++.+|. -|++||+.++... ...+ .+.+. -....+.+.++.+ |++..
T Consensus 70 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~ 147 (530)
T PRK15064 70 RQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIPEE 147 (530)
T ss_pred eccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCChh
Confidence 99998875 4999999865210 0000 00000 0012233444444 44322
Q ss_pred c-cCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 589 V-GERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 589 v-ge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
. .....+||||||||++|||||+.+|++|
T Consensus 148 ~~~~~~~~LSgGq~qrv~lA~aL~~~p~lL 177 (530)
T PRK15064 148 QHYGLMSEVAPGWKLRVLLAQALFSNPDIL 177 (530)
T ss_pred HhcCchhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 2 2345789999999999999999999975
No 319
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.91 E-value=1.9e-24 Score=230.48 Aligned_cols=150 Identities=31% Similarity=0.437 Sum_probs=123.8
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHH-HhcceE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES-LRKSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~-lr~~i~ 536 (617)
-++++|++.+|+ +.++|+|+||++.+||..|++|+||||||||+|.|+|.|+|++|+|.+||.+..-.++.+ ...-|+
T Consensus 8 ll~~~~i~K~Fg-gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~ 86 (500)
T COG1129 8 LLELRGISKSFG-GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIA 86 (500)
T ss_pred eeeeecceEEcC-CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcE
Confidence 589999999997 458999999999999999999999999999999999999999999999999999888775 455699
Q ss_pred EEccCCCcc-cccHHHHHhcCCCCC------CHHHHHHHHHHHcHHHHHHhCC--CCccccccCCCCCCChHHHHHHHHH
Q 007122 537 VVPQDTVLF-NDTIFHNIRYGRLSA------TEEEVYDAARRAAIHDTIMNFP--AKYSTVVGERGLKLSGGEKQRVALA 607 (617)
Q Consensus 537 ~V~Qd~~LF-~gTIreNI~~g~~~~------~de~i~~a~~~a~l~~~I~~lp--~GldT~vge~G~~LSGGQrQRlaiA 607 (617)
.|.||..|+ +-||.|||-+|++.. +..++.+.++. .+..+- ...+++|+ +||+||||-++||
T Consensus 87 ~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~-----~l~~lg~~~~~~~~v~----~LsiaqrQ~VeIA 157 (500)
T COG1129 87 TVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARE-----LLARLGLDIDPDTLVG----DLSIAQRQMVEIA 157 (500)
T ss_pred EEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHH-----HHHHcCCCCChhhhhh----hCCHHHHHHHHHH
Confidence 999999999 569999999997532 23344333332 233321 22555555 6999999999999
Q ss_pred HHHhCCCCCC
Q 007122 608 RAFLKAPPIL 617 (617)
Q Consensus 608 RAll~~p~IL 617 (617)
||+..+++||
T Consensus 158 rAl~~~arll 167 (500)
T COG1129 158 RALSFDARVL 167 (500)
T ss_pred HHHhcCCCEE
Confidence 9999999875
No 320
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=1.2e-24 Score=192.61 Aligned_cols=146 Identities=28% Similarity=0.476 Sum_probs=123.9
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC---CCCeEEECCEeCCCCCHHHHhcc
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT---HSGSIRIDGQDICEVTLESLRKS 534 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p---~~G~I~idG~~i~~~~~~~lr~~ 534 (617)
.+.++||+.+.+ +.-.|.++|++|.+||++-|.||||||||||+.-+.|...+ .+|++.+|++++..++.. +++
T Consensus 2 ~l~l~nvsl~l~-g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--qRq 78 (213)
T COG4136 2 MLCLKNVSLRLP-GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QRQ 78 (213)
T ss_pred ceeeeeeeecCC-CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--hhh
Confidence 467899997765 56789999999999999999999999999999999999987 589999999999887644 578
Q ss_pred eEEEccCCCccc-ccHHHHHhcCCCC-----CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 007122 535 IGVVPQDTVLFN-DTIFHNIRYGRLS-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (617)
Q Consensus 535 i~~V~Qd~~LF~-gTIreNI~~g~~~-----~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiAR 608 (617)
+|+.+||++||. -++-+||.|.-|. +.....+.|+++.+++++..+-| ..||||||-|+++-|
T Consensus 79 ~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrARvaL~R 147 (213)
T COG4136 79 IGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRARVALLR 147 (213)
T ss_pred eeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHHHHHHH
Confidence 999999999995 5999999987653 22344567777778877766655 579999999999999
Q ss_pred HHhCCCCCC
Q 007122 609 AFLKAPPIL 617 (617)
Q Consensus 609 All~~p~IL 617 (617)
+|+..|+.|
T Consensus 148 ~Lla~Pk~l 156 (213)
T COG4136 148 ALLAQPKAL 156 (213)
T ss_pred HHHhCccee
Confidence 999999864
No 321
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.91 E-value=1.7e-24 Score=199.87 Aligned_cols=92 Identities=35% Similarity=0.645 Sum_probs=86.6
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
++++|++++|++ .++++++||++++||.++|+|+||||||||+++|+|+++|++|+|.+||. ..++|+
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~ 68 (144)
T cd03221 1 IELENLSKTYGG-KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGYF 68 (144)
T ss_pred CEEEEEEEEECC-ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEEE
Confidence 578999999974 47999999999999999999999999999999999999999999999994 479999
Q ss_pred ccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 539 PQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 539 ~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
+| ||+||+||++||||++++|+++
T Consensus 69 ~~-------------------------------------------------------lS~G~~~rv~laral~~~p~il 92 (144)
T cd03221 69 EQ-------------------------------------------------------LSGGEKMRLALAKLLLENPNLL 92 (144)
T ss_pred cc-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 99 9999999999999999999975
No 322
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.91 E-value=1.8e-24 Score=240.18 Aligned_cols=147 Identities=24% Similarity=0.440 Sum_probs=114.8
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHH-HHhcceE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE-SLRKSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~-~lr~~i~ 536 (617)
.|+++|+++ ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. .+|++++
T Consensus 257 ~l~~~~l~~------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 330 (501)
T PRK10762 257 RLKVDNLSG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIV 330 (501)
T ss_pred EEEEeCccc------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCE
Confidence 589999984 379999999999999999999999999999999999999999999999999877653 4677899
Q ss_pred EEccCC---Ccc-cccHHHHHhcCCCC--------CCHHHHHHHHHHHcHHHHHHhCCCCcc-ccccCCCCCCChHHHHH
Q 007122 537 VVPQDT---VLF-NDTIFHNIRYGRLS--------ATEEEVYDAARRAAIHDTIMNFPAKYS-TVVGERGLKLSGGEKQR 603 (617)
Q Consensus 537 ~V~Qd~---~LF-~gTIreNI~~g~~~--------~~de~i~~a~~~a~l~~~I~~lp~Gld-T~vge~G~~LSGGQrQR 603 (617)
||||++ .+| +.|++||+.++... .+.++. ...+.++++.+ |++ .........||||||||
T Consensus 331 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGekqr 403 (501)
T PRK10762 331 YISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDFIRLF--NIKTPSMEQAIGLLSGGNQQK 403 (501)
T ss_pred EecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHHHHhc--CCCCCCccCchhhCCHHHHHH
Confidence 999997 344 57999999874210 111111 11233444443 332 22445566899999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
++||||++.+|++|
T Consensus 404 v~lA~al~~~p~ll 417 (501)
T PRK10762 404 VAIARGLMTRPKVL 417 (501)
T ss_pred HHHHHHHhhCCCEE
Confidence 99999999999975
No 323
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.91 E-value=2.1e-24 Score=225.49 Aligned_cols=157 Identities=27% Similarity=0.398 Sum_probs=125.7
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHH-HHhcceE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE-SLRKSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~-~lr~~i~ 536 (617)
.|+++|++..|| +-.+++|+||+|++||+-||.|++|+|||||++.|.|+|+|++|+|++||.+++=-++. ..|..||
T Consensus 4 ~l~~~~itK~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIG 82 (501)
T COG3845 4 ALEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIG 82 (501)
T ss_pred eEEEeccEEEcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCc
Confidence 589999999998 66789999999999999999999999999999999999999999999999999877765 5777899
Q ss_pred EEccCCCccc-ccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCC
Q 007122 537 VVPQDTVLFN-DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (617)
Q Consensus 537 ~V~Qd~~LF~-gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~ 615 (617)
+|.|.+.|++ -|+.|||.+|.+....-.+..+-....+++..++ -|++-...+.-..||-|||||+.|-+|||++|+
T Consensus 83 MVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~--yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~ 160 (501)
T COG3845 83 MVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSER--YGLPVDPDAKVADLSVGEQQRVEILKALYRGAR 160 (501)
T ss_pred EEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHH--hCCCCCccceeecCCcchhHHHHHHHHHhcCCC
Confidence 9999999995 5999999999753210001111111222333333 244444555666799999999999999999999
Q ss_pred CC
Q 007122 616 IL 617 (617)
Q Consensus 616 IL 617 (617)
||
T Consensus 161 iL 162 (501)
T COG3845 161 LL 162 (501)
T ss_pred EE
Confidence 86
No 324
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.7e-24 Score=240.37 Aligned_cols=137 Identities=26% Similarity=0.461 Sum_probs=112.9
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 319 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i~~ 386 (530)
T PRK15064 319 ALEVENLTKGFDN-GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANIGY 386 (530)
T ss_pred eEEEEeeEEeeCC-ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEEEE
Confidence 6999999999964 57999999999999999999999999999999999999999999999872 47999
Q ss_pred EccCCC--cc-cccHHHHHhcCC-CCCCHHHHHHHHHHHcHH-HHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhC
Q 007122 538 VPQDTV--LF-NDTIFHNIRYGR-LSATEEEVYDAARRAAIH-DTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612 (617)
Q Consensus 538 V~Qd~~--LF-~gTIreNI~~g~-~~~~de~i~~a~~~a~l~-~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~ 612 (617)
|+|++. ++ +.|++||+.+.. +...++++.++++..++. +. .......||||||||++||||++.
T Consensus 387 ~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 387 YAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDD-----------IKKSVKVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred EcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhH-----------hcCcccccCHHHHHHHHHHHHHhc
Confidence 999974 44 369999997532 222345566666666552 22 234456899999999999999999
Q ss_pred CCCCC
Q 007122 613 APPIL 617 (617)
Q Consensus 613 ~p~IL 617 (617)
+|+||
T Consensus 456 ~p~ll 460 (530)
T PRK15064 456 KPNVL 460 (530)
T ss_pred CCCEE
Confidence 99985
No 325
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.91 E-value=3.9e-24 Score=217.01 Aligned_cols=150 Identities=30% Similarity=0.481 Sum_probs=119.6
Q ss_pred cceEEEeEEEeecCC----------cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCC
Q 007122 457 GSIQFDNVHFSYLTE----------RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~----------~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~ 526 (617)
.-++.+||...||-. -.+++++||+.++||+++|||+||||||||...|+|+.+++ |+|.++|.++..+
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~ 353 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGL 353 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccccc
Confidence 468999999999721 13799999999999999999999999999999999999866 9999999999999
Q ss_pred CHHH---HhcceEEEccCCC--c-ccccHHHHHh----cCCCCCC----HHHHHHHHHHHcHHHHHHhCCCCccccccCC
Q 007122 527 TLES---LRKSIGVVPQDTV--L-FNDTIFHNIR----YGRLSAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGER 592 (617)
Q Consensus 527 ~~~~---lr~~i~~V~Qd~~--L-F~gTIreNI~----~g~~~~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~ 592 (617)
+.++ +|+++-+|+|||+ | -..||.+=|. ...|..+ ++.+.+|++.+|++..... .-
T Consensus 354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~----------RY 423 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRN----------RY 423 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhh----------cC
Confidence 9776 6889999999998 1 1335555553 3344554 3456777777777654432 23
Q ss_pred CCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 593 GLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 593 G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
-..+|||||||||||||++-+|+++
T Consensus 424 PhEFSGGQRQRIAIARAliLkP~~i 448 (534)
T COG4172 424 PHEFSGGQRQRIAIARALILKPELI 448 (534)
T ss_pred CcccCcchhhHHHHHHHHhcCCcEE
Confidence 4679999999999999999999853
No 326
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.91 E-value=2.8e-24 Score=262.20 Aligned_cols=149 Identities=19% Similarity=0.313 Sum_probs=122.5
Q ss_pred cceEEEeEEEeecC-CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 007122 457 GSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i 535 (617)
..|+++|++++|++ .+++|+|+||+|++||++||+|+||||||||+|+|+|+.+|++|+|.++|.++.+ +....|++|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 36999999999975 3689999999999999999999999999999999999999999999999999865 456678899
Q ss_pred EEEccCCCccc-ccHHHHHhcCC--CCCCHHH----HHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 007122 536 GVVPQDTVLFN-DTIFHNIRYGR--LSATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (617)
Q Consensus 536 ~~V~Qd~~LF~-gTIreNI~~g~--~~~~de~----i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiAR 608 (617)
|||||++.++. -|++||+.+.. ...++++ +.+.++..++.+.. ......||||||||++|||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~-----------dk~~~~LSGGqKqRLslA~ 2083 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYA-----------DRLAGTYSGGNKRKLSTAI 2083 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHh-----------cCChhhCCHHHHHHHHHHH
Confidence 99999999885 59999997531 1122332 33445555554432 3344679999999999999
Q ss_pred HHhCCCCCC
Q 007122 609 AFLKAPPIL 617 (617)
Q Consensus 609 All~~p~IL 617 (617)
||+.+|+||
T Consensus 2084 ALi~~P~VL 2092 (2272)
T TIGR01257 2084 ALIGCPPLV 2092 (2272)
T ss_pred HHhcCCCEE
Confidence 999999985
No 327
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.91 E-value=1.4e-24 Score=240.52 Aligned_cols=150 Identities=26% Similarity=0.324 Sum_probs=113.4
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC-CCCeEEECCEeCCC-CCHHHHhcc
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIRIDGQDICE-VTLESLRKS 534 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p-~~G~I~idG~~i~~-~~~~~lr~~ 534 (617)
..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. .+...+|++
T Consensus 259 ~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 259 PRIVLNNGVVSYND-RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred ceEEEeceEEEECC-eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence 36999999999963 5699999999999999999999999999999999998876 69999999987632 233456789
Q ss_pred eEEEccCCCccc---ccHHHHHhcCCC-------CCCH---HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHH
Q 007122 535 IGVVPQDTVLFN---DTIFHNIRYGRL-------SATE---EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEK 601 (617)
Q Consensus 535 i~~V~Qd~~LF~---gTIreNI~~g~~-------~~~d---e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQr 601 (617)
++||+|++.++. .|++|++.++.. ...+ +++.++++..++.+. ........||||||
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq~ 407 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR----------TADAPFHSLSWGQQ 407 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh----------hccCchhhCCHHHH
Confidence 999999987643 467777653310 0111 223344444433220 23334567999999
Q ss_pred HHHHHHHHHhCCCCCC
Q 007122 602 QRVALARAFLKAPPIL 617 (617)
Q Consensus 602 QRlaiARAll~~p~IL 617 (617)
||++|||||+.+|++|
T Consensus 408 qrv~la~al~~~p~ll 423 (490)
T PRK10938 408 RLALIVRALVKHPTLL 423 (490)
T ss_pred HHHHHHHHHhcCCCEE
Confidence 9999999999999985
No 328
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1e-24 Score=242.01 Aligned_cols=148 Identities=21% Similarity=0.366 Sum_probs=113.4
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCH-HHHhcceE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~-~~lr~~i~ 536 (617)
.++++|+++. .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. +..+++++
T Consensus 257 ~l~~~~~~~~-----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 331 (501)
T PRK11288 257 RLRLDGLKGP-----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM 331 (501)
T ss_pred EEEEeccccC-----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCE
Confidence 5899999853 48999999999999999999999999999999999999999999999999875543 45678899
Q ss_pred EEccCCC---cc-cccHHHHHhcCCCCC--------CHHHHHHHHHHHcHHHHHHhCCCCcc-ccccCCCCCCChHHHHH
Q 007122 537 VVPQDTV---LF-NDTIFHNIRYGRLSA--------TEEEVYDAARRAAIHDTIMNFPAKYS-TVVGERGLKLSGGEKQR 603 (617)
Q Consensus 537 ~V~Qd~~---LF-~gTIreNI~~g~~~~--------~de~i~~a~~~a~l~~~I~~lp~Gld-T~vge~G~~LSGGQrQR 603 (617)
|+||++. +| +.|+.||+.++.... ...+- ...+.+++..+ |++ ......-..||||||||
T Consensus 332 ~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~qr 404 (501)
T PRK11288 332 LCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWE-----AENADRFIRSL--NIKTPSREQLIMNLSGGNQQK 404 (501)
T ss_pred EcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHH-----HHHHHHHHHhc--CcccCCccCccccCCHHHHHH
Confidence 9999972 55 589999998753110 11111 11223344443 231 12334456899999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
++||||++.+|++|
T Consensus 405 l~la~al~~~p~ll 418 (501)
T PRK11288 405 AILGRWLSEDMKVI 418 (501)
T ss_pred HHHHHHHccCCCEE
Confidence 99999999999975
No 329
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.91 E-value=4.8e-24 Score=229.81 Aligned_cols=136 Identities=27% Similarity=0.354 Sum_probs=106.7
Q ss_pred ceEEEeEEEeecCC--cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 007122 458 SIQFDNVHFSYLTE--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~--~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i 535 (617)
.++++|++|+|+++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 58999999999754 4799999999999999999999999999999999999999999999999751
Q ss_pred EEEccCCCcc-cccHHHHHhcCC--CCCCHHH----HHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 007122 536 GVVPQDTVLF-NDTIFHNIRYGR--LSATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (617)
Q Consensus 536 ~~V~Qd~~LF-~gTIreNI~~g~--~~~~de~----i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiAR 608 (617)
++.+.+.++ ..|++|||.+.. ...++++ +.++++.+++.++++ .....||||||||++|||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld-----------~~~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIY-----------QPVKTYSSGMKSRLGFAI 156 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhh-----------CCcccCCHHHHHHHHHHH
Confidence 222333343 359999997642 1233333 334455555554433 345689999999999999
Q ss_pred HHhCCCCCC
Q 007122 609 AFLKAPPIL 617 (617)
Q Consensus 609 All~~p~IL 617 (617)
||+.+|++|
T Consensus 157 AL~~~P~LL 165 (549)
T PRK13545 157 SVHINPDIL 165 (549)
T ss_pred HHHhCCCEE
Confidence 999999975
No 330
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.91 E-value=4.6e-24 Score=216.68 Aligned_cols=122 Identities=22% Similarity=0.319 Sum_probs=97.3
Q ss_pred cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcc-cccHH
Q 007122 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF-NDTIF 550 (617)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF-~gTIr 550 (617)
+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. +++++|++.++ ..|++
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~-------------~~~~~~~~~~~~~~tv~ 103 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-------------VSVIAISAGLSGQLTGI 103 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE-------------EeEEecccCCCCCCcHH
Confidence 46899999999999999999999999999999999999999999999994 56788888766 46999
Q ss_pred HHHhcCC--CCCCHHHHHHH----HHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 551 HNIRYGR--LSATEEEVYDA----ARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 551 eNI~~g~--~~~~de~i~~a----~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
||+.++. ...+.++..+. ++..++. ..+......||||||||++||||++++|+||
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~Gq~qrv~Laral~~~p~iL 165 (264)
T PRK13546 104 ENIEFKMLCMGFKRKEIKAMTPKIIEFSELG-----------EFIYQPVKKYSSGMRAKLGFSINITVNPDIL 165 (264)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhcCCcccCCHHHHHHHHHHHHHhhCCCEE
Confidence 9997641 12344444332 2222333 3344456789999999999999999999985
No 331
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.90 E-value=8.2e-24 Score=212.31 Aligned_cols=151 Identities=32% Similarity=0.472 Sum_probs=114.5
Q ss_pred eEEEeEEEeecCC---cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC-C----CCCeEEECCEeCCCCCHHH
Q 007122 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-T----HSGSIRIDGQDICEVTLES 530 (617)
Q Consensus 459 I~~~nvsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~-p----~~G~I~idG~~i~~~~~~~ 530 (617)
++++|++..|..+ ..+++|+||+|++||++||||+|||||||+.+.++|+.+ | .+|+|.++|.|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 5789999999742 379999999999999999999999999999999999998 3 6799999999999999875
Q ss_pred Hh----cceEEEccCCC-ccc--ccH----HHHHhcCCCCCC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCC
Q 007122 531 LR----KSIGVVPQDTV-LFN--DTI----FHNIRYGRLSAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLK 595 (617)
Q Consensus 531 lr----~~i~~V~Qd~~-LF~--gTI----reNI~~g~~~~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~ 595 (617)
+| +.|++|+|||. =|| -|| .|-+.......+ .++..+.++.+++.+- +..+..--..
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~--------~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDP--------ERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCH--------HHHHhhCCcc
Confidence 43 37999999975 122 133 333333211101 2345666677666532 1122334568
Q ss_pred CChHHHHHHHHHHHHhCCCCCC
Q 007122 596 LSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 596 LSGGQrQRlaiARAll~~p~IL 617 (617)
||||||||+.||-||..+|++|
T Consensus 154 lSGGMrQRV~IAmala~~P~Ll 175 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLL 175 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEE
Confidence 9999999999999999999985
No 332
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.90 E-value=8.1e-24 Score=227.19 Aligned_cols=151 Identities=30% Similarity=0.432 Sum_probs=117.5
Q ss_pred ceEEEeEEEeecC-C--cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCC----CCeEEECCEeCCCCCHHH
Q 007122 458 SIQFDNVHFSYLT-E--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH----SGSIRIDGQDICEVTLES 530 (617)
Q Consensus 458 ~I~~~nvsF~Y~~-~--~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~----~G~I~idG~~i~~~~~~~ 530 (617)
-++++|++..|.. + .++++|+||+|.+||.+||||+|||||||+++.|+|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999973 2 26999999999999999999999999999999999999988 899999999999999876
Q ss_pred Hh----cceEEEccCCC-cccc--cHHHHH----hcCCCC---CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCC
Q 007122 531 LR----KSIGVVPQDTV-LFND--TIFHNI----RYGRLS---ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKL 596 (617)
Q Consensus 531 lr----~~i~~V~Qd~~-LF~g--TIreNI----~~g~~~---~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~L 596 (617)
+| +.|+||||||. .+|- ||-+-| ...... ...++..+.++.+++.+-... ..--..|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 53 47999999986 5554 555544 222211 122344455555555432222 3345789
Q ss_pred ChHHHHHHHHHHHHhCCCCCC
Q 007122 597 SGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 597 SGGQrQRlaiARAll~~p~IL 617 (617)
|||||||+.||+||..||++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LL 176 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLL 176 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEE
Confidence 999999999999999999975
No 333
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.90 E-value=3.9e-24 Score=195.35 Aligned_cols=148 Identities=28% Similarity=0.410 Sum_probs=115.8
Q ss_pred eEEEeEEE--eecC------CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHH
Q 007122 459 IQFDNVHF--SYLT------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES 530 (617)
Q Consensus 459 I~~~nvsF--~Y~~------~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~ 530 (617)
++++|++. .|.. ...+++.+||++++|+++||+|.+|||||||+|.|+|..+|++|+|++||.++.--+...
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 45666644 4431 235889999999999999999999999999999999999999999999999998777777
Q ss_pred HhcceEEEccCCC-----------cccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChH
Q 007122 531 LRKSIGVVPQDTV-----------LFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGG 599 (617)
Q Consensus 531 lr~~i~~V~Qd~~-----------LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGG 599 (617)
..++|-+++|||- +.++.++-|-.+ .|+...+++.+.++.+|+. |+--+ -.-..||-|
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~-~~~~R~~~i~~TL~~VGL~------Pdhan----~~~~~la~~ 153 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDL-EPEQRRKQIFETLRMVGLL------PDHAN----YYPHMLAPG 153 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccC-ChHHHHHHHHHHHHHhccC------ccccc----cchhhcCch
Confidence 7789999999985 333333333222 2334567788888888875 43222 134679999
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 007122 600 EKQRVALARAFLKAPPIL 617 (617)
Q Consensus 600 QrQRlaiARAll~~p~IL 617 (617)
||||+|+||||+-+|+|+
T Consensus 154 QKQRVaLARALIL~P~iI 171 (267)
T COG4167 154 QKQRVALARALILRPKII 171 (267)
T ss_pred hHHHHHHHHHHhcCCcEE
Confidence 999999999999999974
No 334
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.6e-23 Score=196.46 Aligned_cols=102 Identities=53% Similarity=0.827 Sum_probs=96.1
Q ss_pred EEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc
Q 007122 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP 539 (617)
Q Consensus 460 ~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~ 539 (617)
+++|++|.|++ .++++++||+|++|+.++|+|+||||||||+++|+|+++|++|+|.+||.++.+.....++++++|++
T Consensus 1 ~~~~~~~~~~~-~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 79 (157)
T cd00267 1 EIENLSFRYGG-RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP 79 (157)
T ss_pred CeEEEEEEeCC-eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe
Confidence 36899999974 47999999999999999999999999999999999999999999999999998887888899999999
Q ss_pred cCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 540 QDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 540 Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
| |||||+||++||||++.+|+++
T Consensus 80 q-------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 80 Q-------------------------------------------------------LSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred e-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 9 9999999999999999999874
No 335
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.9e-23 Score=201.12 Aligned_cols=149 Identities=31% Similarity=0.417 Sum_probs=118.4
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCH-HHHhcce
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSI 535 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~-~~lr~~i 535 (617)
.-|+++||++.|. ++++|+|+|++|+|||+.+|+|++|||||||+++++|.+.|++|.+.+.|.....-+. .++|++|
T Consensus 30 ~li~l~~v~v~r~-gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~I 108 (257)
T COG1119 30 PLIELKNVSVRRN-GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRI 108 (257)
T ss_pred ceEEecceEEEEC-CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHh
Confidence 3599999999995 6799999999999999999999999999999999999999999999999999998888 9999999
Q ss_pred EEEccCC---CcccccHHHHHhc------CCC--CCCHHHHHHHH---HHHcHHHHHHhCCCCccccccCCCCCCChHHH
Q 007122 536 GVVPQDT---VLFNDTIFHNIRY------GRL--SATEEEVYDAA---RRAAIHDTIMNFPAKYSTVVGERGLKLSGGEK 601 (617)
Q Consensus 536 ~~V~Qd~---~LF~gTIreNI~~------g~~--~~~de~i~~a~---~~a~l~~~I~~lp~GldT~vge~G~~LSGGQr 601 (617)
|+|+-+- +.=+.+++|=+.= |.. +.++++..+|- +..++.+ ..+..=..||-|||
T Consensus 109 G~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~-----------la~r~~~~LS~Ge~ 177 (257)
T COG1119 109 GLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH-----------LADRPFGSLSQGEQ 177 (257)
T ss_pred CccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh-----------hccCchhhcCHhHH
Confidence 9998532 2335567766531 221 35555543332 2223322 23344467999999
Q ss_pred HHHHHHHHHhCCCCCC
Q 007122 602 QRVALARAFLKAPPIL 617 (617)
Q Consensus 602 QRlaiARAll~~p~IL 617 (617)
||+-|||||+++|++|
T Consensus 178 rrvLiaRALv~~P~LL 193 (257)
T COG1119 178 RRVLIARALVKDPELL 193 (257)
T ss_pred HHHHHHHHHhcCCCEE
Confidence 9999999999999975
No 336
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.90 E-value=1.7e-23 Score=234.86 Aligned_cols=138 Identities=28% Similarity=0.397 Sum_probs=107.9
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++ + .+|+|
T Consensus 324 ~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i~~ 391 (556)
T PRK11819 324 VIEAENLSKSFGD-RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKLAY 391 (556)
T ss_pred EEEEEeEEEEECC-eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEEEE
Confidence 6999999999964 5799999999999999999999999999999999999999999999964 2 15999
Q ss_pred EccCC-Cccc-ccHHHHHhcCCCC--C--CHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh
Q 007122 538 VPQDT-VLFN-DTIFHNIRYGRLS--A--TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (617)
Q Consensus 538 V~Qd~-~LF~-gTIreNI~~g~~~--~--~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll 611 (617)
|||++ .++. -|++||+.++... . .+++..++++..++.+ .........||||||||++||||++
T Consensus 392 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~la~al~ 461 (556)
T PRK11819 392 VDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKG----------GDQQKKVGVLSGGERNRLHLAKTLK 461 (556)
T ss_pred EeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCCh----------hHhcCchhhCCHHHHHHHHHHHHHh
Confidence 99997 5554 5999999875321 1 1222223333333211 0123344679999999999999999
Q ss_pred CCCCCC
Q 007122 612 KAPPIL 617 (617)
Q Consensus 612 ~~p~IL 617 (617)
.+|++|
T Consensus 462 ~~p~ll 467 (556)
T PRK11819 462 QGGNVL 467 (556)
T ss_pred cCCCEE
Confidence 999975
No 337
>PLN03073 ABC transporter F family; Provisional
Probab=99.90 E-value=1.6e-23 Score=238.76 Aligned_cols=139 Identities=26% Similarity=0.361 Sum_probs=111.8
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~ 536 (617)
..|+++||+|+|++++++|+|+||+|++|++++|+|+||||||||+++|+|+.+|++|+|.+++ +.+|+
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~ig 575 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRMA 575 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeEE
Confidence 3699999999997656799999999999999999999999999999999999999999999876 24799
Q ss_pred EEccCCCcccccHHHHHhcC----CCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhC
Q 007122 537 VVPQDTVLFNDTIFHNIRYG----RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612 (617)
Q Consensus 537 ~V~Qd~~LF~gTIreNI~~g----~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~ 612 (617)
|++|++. ...++.+|..+. .+..+++++.++++..++.+.. .......||||||||++||||++.
T Consensus 576 yv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~----------~~~~~~~LSgGqkqRvaLAraL~~ 644 (718)
T PLN03073 576 VFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFK 644 (718)
T ss_pred EEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHH----------hcCCccccCHHHHHHHHHHHHHhc
Confidence 9999873 333566664211 2345567777777777764321 123356899999999999999999
Q ss_pred CCCCC
Q 007122 613 APPIL 617 (617)
Q Consensus 613 ~p~IL 617 (617)
+|++|
T Consensus 645 ~p~lL 649 (718)
T PLN03073 645 KPHIL 649 (718)
T ss_pred CCCEE
Confidence 99975
No 338
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.90 E-value=1.5e-23 Score=233.07 Aligned_cols=147 Identities=18% Similarity=0.324 Sum_probs=113.1
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHH-HhcceE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES-LRKSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~-lr~~i~ 536 (617)
.|+++|++. .+|+|+||+|++|+++||+|+||||||||+++|+|+.+|++|+|.++|.++...+... ++++++
T Consensus 268 ~l~~~~l~~------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 341 (510)
T PRK15439 268 VLTVEDLTG------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341 (510)
T ss_pred eEEEeCCCC------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcE
Confidence 599999984 2699999999999999999999999999999999999999999999999998777654 466899
Q ss_pred EEccCC---Cccc-ccHHHHHhcCC----CC-CCHHHHHHHHHHHcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHH
Q 007122 537 VVPQDT---VLFN-DTIFHNIRYGR----LS-ATEEEVYDAARRAAIHDTIMNFPAKYS-TVVGERGLKLSGGEKQRVAL 606 (617)
Q Consensus 537 ~V~Qd~---~LF~-gTIreNI~~g~----~~-~~de~i~~a~~~a~l~~~I~~lp~Gld-T~vge~G~~LSGGQrQRlai 606 (617)
||||++ .+|. .|+.||+.... +. ...++. +..+.+.++.+ |++ .........||||||||++|
T Consensus 342 ~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl~l 414 (510)
T PRK15439 342 YLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARE-----NAVLERYRRAL--NIKFNHAEQAARTLSGGNQQKVLI 414 (510)
T ss_pred ECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHH-----HHHHHHHHHHc--CCCCCCccCccccCCcHHHHHHHH
Confidence 999986 3665 59999985320 10 011111 11233444443 332 23444556799999999999
Q ss_pred HHHHhCCCCCC
Q 007122 607 ARAFLKAPPIL 617 (617)
Q Consensus 607 ARAll~~p~IL 617 (617)
|||++.+|+||
T Consensus 415 a~al~~~p~lL 425 (510)
T PRK15439 415 AKCLEASPQLL 425 (510)
T ss_pred HHHHhhCCCEE
Confidence 99999999985
No 339
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.90 E-value=8.8e-24 Score=208.20 Aligned_cols=121 Identities=21% Similarity=0.283 Sum_probs=94.0
Q ss_pred cceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEE-ECCEeCCCCCHHHHhcceEEEccCCCcccc-cHHH
Q 007122 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR-IDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFH 551 (617)
Q Consensus 474 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~-idG~~i~~~~~~~lr~~i~~V~Qd~~LF~g-TIre 551 (617)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++|.++ .+.|++.+|.. |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 68999999999999999999999999999999999999999997 777532 13467788875 9999
Q ss_pred HHhcCCC--CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 552 NIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 552 NI~~g~~--~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
||.+... ..+.++..+.+.. ...+++.+++.++ .||||||||++||||++++|+++
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~----~lS~G~~qrv~la~al~~~p~ll 126 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCYQ------LTQLEQCYTDRVS----EYSVTMKTHLAFAINLLLPCRLY 126 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHHH------HhChhHHhhchHh----hcCHHHHHHHHHHHHHhcCCCEE
Confidence 9976421 2344443332211 2344555565554 49999999999999999999974
No 340
>PLN03140 ABC transporter G family member; Provisional
Probab=99.90 E-value=2.3e-23 Score=252.78 Aligned_cols=151 Identities=24% Similarity=0.362 Sum_probs=121.4
Q ss_pred cceEEEeEEEeec--C----------CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC--CCCeEEECCEe
Q 007122 457 GSIQFDNVHFSYL--T----------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT--HSGSIRIDGQD 522 (617)
Q Consensus 457 ~~I~~~nvsF~Y~--~----------~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p--~~G~I~idG~~ 522 (617)
..++++||++..+ . .+.+|+|+|++|+||+.+||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 3699999999874 1 23699999999999999999999999999999999999874 78999999987
Q ss_pred CCCCCHHHHhcceEEEccCCCccc-ccHHHHHhcCC----C-CCCHHH----HHHHHHHHcHHHHHHhCCCCccccccCC
Q 007122 523 ICEVTLESLRKSIGVVPQDTVLFN-DTIFHNIRYGR----L-SATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGER 592 (617)
Q Consensus 523 i~~~~~~~lr~~i~~V~Qd~~LF~-gTIreNI~~g~----~-~~~de~----i~~a~~~a~l~~~I~~lp~GldT~vge~ 592 (617)
.+ ...+++.++||+|++.++. .|++|||.++. | +.++++ +.+.++..++.+ -.|+.+|..
T Consensus 946 ~~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~-------~~~~~vg~~ 1015 (1470)
T PLN03140 946 KK---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN-------LKDAIVGLP 1015 (1470)
T ss_pred CC---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChh-------HhCCccCCC
Confidence 64 3457788999999987775 69999998742 2 233333 445555555543 357888865
Q ss_pred C-CCCChHHHHHHHHHHHHhCCCCCC
Q 007122 593 G-LKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 593 G-~~LSGGQrQRlaiARAll~~p~IL 617 (617)
+ ..||||||||++|||||+.+|+||
T Consensus 1016 ~~~~LSgGerkRvsIa~aL~~~P~lL 1041 (1470)
T PLN03140 1016 GVTGLSTEQRKRLTIAVELVANPSII 1041 (1470)
T ss_pred CCCCcCHHHHHHHHHHHHHhhCCCEE
Confidence 5 579999999999999999999985
No 341
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.7e-23 Score=230.22 Aligned_cols=150 Identities=22% Similarity=0.330 Sum_probs=113.6
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHH-HHhcceE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE-SLRKSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~-~lr~~i~ 536 (617)
.|+++|++++| +++|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++...+.. .+++.++
T Consensus 250 ~i~~~~l~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 326 (491)
T PRK10982 250 ILEVRNLTSLR---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFA 326 (491)
T ss_pred EEEEeCccccc---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCE
Confidence 59999999975 3699999999999999999999999999999999999999999999999999877654 4577899
Q ss_pred EEccCCC---ccc-ccHHHH-----HhcCCC--C-CCHHHHHHHHHHHcHHHHHHhCCCCccc-cccCCCCCCChHHHHH
Q 007122 537 VVPQDTV---LFN-DTIFHN-----IRYGRL--S-ATEEEVYDAARRAAIHDTIMNFPAKYST-VVGERGLKLSGGEKQR 603 (617)
Q Consensus 537 ~V~Qd~~---LF~-gTIreN-----I~~g~~--~-~~de~i~~a~~~a~l~~~I~~lp~GldT-~vge~G~~LSGGQrQR 603 (617)
|+||++. +|. .|+.+| +.+..+ . .+.++.. ..+.+.++.+ |+.. .....-..||||||||
T Consensus 327 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~qr 399 (491)
T PRK10982 327 LVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK-----SDTQWVIDSM--RVKTPGHRTQIGSLSGGNQQK 399 (491)
T ss_pred EcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH-----HHHHHHHHhc--CccCCCcccccccCCcHHHHH
Confidence 9999963 554 577766 332111 1 1111111 1223344444 2211 2345556899999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
++||||++.+|+||
T Consensus 400 v~la~al~~~p~il 413 (491)
T PRK10982 400 VIIGRWLLTQPEIL 413 (491)
T ss_pred HHHHHHHhcCCCEE
Confidence 99999999999985
No 342
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.89 E-value=1.1e-19 Score=183.17 Aligned_cols=273 Identities=21% Similarity=0.315 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 128 ITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFSKVA 207 (617)
Q Consensus 128 ~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~~~~~~ 207 (617)
++++++.++..+..+..|++++.++|.+........ .....+.. .+++..+ +...+.....+...+..
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~ 69 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNN-----SSLISLAF----LLIAIFL---LIFLFSYIYFYLSSRIS 69 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHH-----HHHHHHHH----HHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchh-----hHHHHHHH----HHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 345556666777788899999999998543211100 11111110 0111111 11233334444567888
Q ss_pred HHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 007122 208 LRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWITS 287 (617)
Q Consensus 208 ~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~~i~~ 287 (617)
.++..+++.++++|+++.|..||+++++|++.+++++|.+.++.........++..++.++. ..++++..+|.++++.+
T Consensus 70 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~l~~l 148 (275)
T PF00664_consen 70 QRIRKDLRKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIF-SLILLFFISWKLALILL 148 (275)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhh-hhhcccccccccccccc
Confidence 99999999999999999999999999999999999988888877766555555554443332 23445566888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 288 LSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLN 367 (617)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (617)
++.+++.++.....+..++..++..++.++..+.+.|.++|+++||+|+.|+++.+++++..++..+...+..+......
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (275)
T PF00664_consen 149 IILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLS 228 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777778888888899999999999999999999999999999999999988888887777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhcCCcCHHHHHHHHHHHHHHHHHH
Q 007122 368 FGQNVIFSAALSTAMVLCSHG-ILSGEMTVGDLVMVNGLLFQLSLPL 413 (617)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~-v~~g~lt~G~l~~~~~~~~~l~~pl 413 (617)
.....+.......++++|++. +.+|.+|+|+++++..+...+..|+
T Consensus 229 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 229 SISQFISYLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 666666655566677788888 8999999999999999999998885
No 343
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.89 E-value=3.1e-23 Score=232.72 Aligned_cols=137 Identities=28% Similarity=0.425 Sum_probs=108.0
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+.+|++|+|.+++ + .+|+|
T Consensus 322 ~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i~~ 389 (552)
T TIGR03719 322 VIEAENLSKGFGD-KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKLAY 389 (552)
T ss_pred EEEEeeEEEEECC-eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEEEE
Confidence 5999999999964 5799999999999999999999999999999999999999999999965 2 16999
Q ss_pred EccCCC-cc-cccHHHHHhcCCCC--CC--HHHHHHHHHHHcHHHHHHhCCCCccc-cccCCCCCCChHHHHHHHHHHHH
Q 007122 538 VPQDTV-LF-NDTIFHNIRYGRLS--AT--EEEVYDAARRAAIHDTIMNFPAKYST-VVGERGLKLSGGEKQRVALARAF 610 (617)
Q Consensus 538 V~Qd~~-LF-~gTIreNI~~g~~~--~~--de~i~~a~~~a~l~~~I~~lp~GldT-~vge~G~~LSGGQrQRlaiARAl 610 (617)
|||++. ++ +.|++||+.++.+. .. +++..++ ++.+ |++. ........||||||||++||||+
T Consensus 390 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~~LSgGe~qrv~la~al 458 (552)
T TIGR03719 390 VDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAY---------VGRF--NFKGSDQQKKVGQLSGGERNRVHLAKTL 458 (552)
T ss_pred EeCCccccCCCCcHHHHHHhhccccccCcchHHHHHH---------HHhC--CCChhHhcCchhhCCHHHHHHHHHHHHH
Confidence 999973 55 45999999876421 11 2222222 3332 2322 12344567999999999999999
Q ss_pred hCCCCCC
Q 007122 611 LKAPPIL 617 (617)
Q Consensus 611 l~~p~IL 617 (617)
+.+|++|
T Consensus 459 ~~~p~ll 465 (552)
T TIGR03719 459 KSGGNVL 465 (552)
T ss_pred hhCCCEE
Confidence 9999985
No 344
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.89 E-value=3.3e-23 Score=235.78 Aligned_cols=138 Identities=28% Similarity=0.478 Sum_probs=107.3
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
-|+++||+++|+ ++++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+ |.++ .|+|
T Consensus 319 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~y 386 (635)
T PRK11147 319 VFEMENVNYQID-GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVAY 386 (635)
T ss_pred eEEEeeeEEEEC-CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEEE
Confidence 599999999996 457999999999999999999999999999999999999999999999 4322 5999
Q ss_pred EccCC-Cccc-ccHHHHHhcCCCCC--C--HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh
Q 007122 538 VPQDT-VLFN-DTIFHNIRYGRLSA--T--EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (617)
Q Consensus 538 V~Qd~-~LF~-gTIreNI~~g~~~~--~--de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll 611 (617)
++|++ .++. .|+.||+.++.+.. + ++++.+.++..++.+ +..++ ....||||||||++||||++
T Consensus 387 ~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~----~~~~LSgGekqRl~la~al~ 456 (635)
T PRK11147 387 FDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHP------KRAMT----PVKALSGGERNRLLLARLFL 456 (635)
T ss_pred EeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCH------HHHhC----hhhhCCHHHHHHHHHHHHHh
Confidence 99986 3554 49999998754322 1 222333333333211 11233 34579999999999999999
Q ss_pred CCCCCC
Q 007122 612 KAPPIL 617 (617)
Q Consensus 612 ~~p~IL 617 (617)
.+|++|
T Consensus 457 ~~p~lL 462 (635)
T PRK11147 457 KPSNLL 462 (635)
T ss_pred cCCCEE
Confidence 999975
No 345
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=1.4e-23 Score=197.11 Aligned_cols=146 Identities=27% Similarity=0.436 Sum_probs=126.0
Q ss_pred CCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCC--cc-c
Q 007122 470 TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTV--LF-N 546 (617)
Q Consensus 470 ~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~--LF-~ 546 (617)
.++++|+++|++|++|+++-|+|.+|||||||++.++|-..|++|+|.|||+|+..++.......++-|+|||- .+ +
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~ 96 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE 96 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999997 33 5
Q ss_pred ccHHHHHhcCCCC-----CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 547 DTIFHNIRYGRLS-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 547 gTIreNI~~g~~~-----~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
-||.||+.++... .+. .+ ..=......+-+..+|.|++-.++.+-.-|||||||=|+|+-|.++.|+||
T Consensus 97 lTieENl~la~~Rg~~rgl~~-~l-n~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiL 170 (263)
T COG1101 97 LTIEENLALAESRGKKRGLSS-AL-NERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKIL 170 (263)
T ss_pred ccHHHHHHHHHhcCcccccch-hh-hHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEE
Confidence 6999999886421 221 11 122233455668899999999999999999999999999999999999986
No 346
>PRK13409 putative ATPase RIL; Provisional
Probab=99.89 E-value=3.4e-23 Score=232.06 Aligned_cols=134 Identities=20% Similarity=0.245 Sum_probs=109.7
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.++++|++++|++ ..|+++||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++ .+++|
T Consensus 340 ~l~~~~ls~~~~~--~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~y 404 (590)
T PRK13409 340 LVEYPDLTKKLGD--FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKISY 404 (590)
T ss_pred EEEEcceEEEECC--EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEEE
Confidence 5999999999964 34999999999999999999999999999999999999999999986 15999
Q ss_pred EccCCCc-ccccHHHHHhcCCCCCC-HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCC
Q 007122 538 VPQDTVL-FNDTIFHNIRYGRLSAT-EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (617)
Q Consensus 538 V~Qd~~L-F~gTIreNI~~g~~~~~-de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~ 615 (617)
+||++.+ ++.|++||+.++..... ++.+.++++..++.+.. ...-..||||||||++|||||+++|+
T Consensus 405 ~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~-----------~~~~~~LSGGe~QRvaiAraL~~~p~ 473 (590)
T PRK13409 405 KPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLL-----------DKNVKDLSGGELQRVAIAACLSRDAD 473 (590)
T ss_pred ecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHH-----------hCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 9999875 57799999987632222 23345555555554432 23445799999999999999999999
Q ss_pred CC
Q 007122 616 IL 617 (617)
Q Consensus 616 IL 617 (617)
+|
T Consensus 474 ll 475 (590)
T PRK13409 474 LY 475 (590)
T ss_pred EE
Confidence 85
No 347
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.88 E-value=2.2e-23 Score=218.22 Aligned_cols=115 Identities=38% Similarity=0.563 Sum_probs=92.5
Q ss_pred EECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccc-cHHHHHhcCCC--CCCH----
Q 007122 490 IVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNIRYGRL--SATE---- 562 (617)
Q Consensus 490 IVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~g-TIreNI~~g~~--~~~d---- 562 (617)
|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .+++++||+|++.+|.. |++||+.++.. ..++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999987664 46789999999999965 99999987631 1222
Q ss_pred HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 563 EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 563 e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
+++.++++..++.++. .....+||||||||++|||||+++|++|
T Consensus 79 ~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qRvalaraL~~~p~ll 122 (325)
T TIGR01187 79 PRVLEALRLVQLEEFA-----------DRKPHQLSGGQQQRVALARALVFKPKIL 122 (325)
T ss_pred HHHHHHHHHcCCcchh-----------cCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 2344455555554433 3344689999999999999999999975
No 348
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.88 E-value=6.1e-23 Score=195.14 Aligned_cols=90 Identities=32% Similarity=0.368 Sum_probs=82.1
Q ss_pred EeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccC
Q 007122 462 DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQD 541 (617)
Q Consensus 462 ~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd 541 (617)
.||+++|+ +.+++++ +|+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ++|++|+
T Consensus 4 ~~l~~~~~-~~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~q~ 69 (177)
T cd03222 4 PDCVKRYG-VFFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKPQY 69 (177)
T ss_pred CCeEEEEC-CEEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEccc
Confidence 58889996 4578888 49999999999999999999999999999999999999999963 7899997
Q ss_pred CCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 542 TVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 542 ~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
+. ||||||||++||||++.+|+++
T Consensus 70 ~~----------------------------------------------------LSgGq~qrv~laral~~~p~ll 93 (177)
T cd03222 70 ID----------------------------------------------------LSGGELQRVAIAAALLRNATFY 93 (177)
T ss_pred CC----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 63 9999999999999999999975
No 349
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=3.5e-22 Score=226.99 Aligned_cols=138 Identities=25% Similarity=0.417 Sum_probs=108.0
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++||+++|+ ++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. .+++|
T Consensus 312 ~l~~~~l~~~y~-~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~igy 379 (638)
T PRK10636 312 LLKMEKVSAGYG-DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLGY 379 (638)
T ss_pred eEEEEeeEEEeC-CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEEE
Confidence 699999999996 467999999999999999999999999999999999999999999999741 26999
Q ss_pred EccCC--Ccc-cccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCC
Q 007122 538 VPQDT--VLF-NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (617)
Q Consensus 538 V~Qd~--~LF-~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p 614 (617)
++|++ .+. +.|+.+++....+...++++.+.++..++.+ ..+......||||||||++||||++.+|
T Consensus 380 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGekqRl~La~~l~~~p 449 (638)
T PRK10636 380 FAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQG----------DKVTEETRRFSGGEKARLVLALIVWQRP 449 (638)
T ss_pred ecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCCh----------hHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 99985 344 3488888753222233444555555544421 0122334579999999999999999999
Q ss_pred CCC
Q 007122 615 PIL 617 (617)
Q Consensus 615 ~IL 617 (617)
++|
T Consensus 450 ~lL 452 (638)
T PRK10636 450 NLL 452 (638)
T ss_pred CEE
Confidence 975
No 350
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=2.3e-23 Score=192.92 Aligned_cols=145 Identities=29% Similarity=0.481 Sum_probs=122.8
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|+++||+.+|. ++.|++|+|++|++|+.++|+||+|+|||||+.+++||.++++|+|.+||.++.+.+.+++.+.+++.
T Consensus 2 I~i~nv~K~y~-~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 2 ITIENVSKSYG-TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred eeehhhhHhhC-CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHH
Confidence 78999999996 56899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcc-cccHHHHHhcCCCC-------CCH-HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 007122 539 PQDTVLF-NDTIFHNIRYGRLS-------ATE-EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (617)
Q Consensus 539 ~Qd~~LF-~gTIreNI~~g~~~-------~~d-e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARA 609 (617)
-|+.++- .-|+||=+.||+=. ..| ..+.+|++-.+|.+.=+ .| =..||||||||--||-.
T Consensus 81 kQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~d----ry-------Ld~LSGGQrQRAfIAMV 149 (252)
T COG4604 81 KQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSD----RY-------LDELSGGQRQRAFIAMV 149 (252)
T ss_pred HhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHH----Hh-------HHhcccchhhhhhhhee
Confidence 9999876 55999999998622 222 23566666666544211 12 23599999999999999
Q ss_pred HhCCCC
Q 007122 610 FLKAPP 615 (617)
Q Consensus 610 ll~~p~ 615 (617)
+.+|.+
T Consensus 150 laQdTd 155 (252)
T COG4604 150 LAQDTD 155 (252)
T ss_pred eeccCc
Confidence 888875
No 351
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=6.7e-23 Score=186.85 Aligned_cols=148 Identities=32% Similarity=0.534 Sum_probs=117.8
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCC----------
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT---------- 527 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~---------- 527 (617)
.++++|+..+|.. ..||+++||+-++|+.|.|+|.|||||||+++.+.=|-.|++|.|.++|..++-..
T Consensus 6 ~l~v~dlHK~~G~-~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 6 ALEVEDLHKRYGE-HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred ceehhHHHhhccc-chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 6899999999963 46999999999999999999999999999999999999999999999999876322
Q ss_pred ---HHHHhcceEEEccCCCcc-cccHHHHHhcCCC---CCCH-HHH---HHHHHHHcHHHHHHhCCCCccccccCCCCCC
Q 007122 528 ---LESLRKSIGVVPQDTVLF-NDTIFHNIRYGRL---SATE-EEV---YDAARRAAIHDTIMNFPAKYSTVVGERGLKL 596 (617)
Q Consensus 528 ---~~~lr~~i~~V~Qd~~LF-~gTIreNI~~g~~---~~~d-e~i---~~a~~~a~l~~~I~~lp~GldT~vge~G~~L 596 (617)
.+-+|.+.++|+|..-|+ ..|+.||+.=..- ..+. |.+ ..-+.++|+.|--+.- -..|
T Consensus 85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~Y-----------P~~L 153 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAY-----------PAHL 153 (256)
T ss_pred HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcC-----------cccc
Confidence 345789999999999998 5699999842210 1222 222 2334455665544333 4679
Q ss_pred ChHHHHHHHHHHHHhCCCCCC
Q 007122 597 SGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 597 SGGQrQRlaiARAll~~p~IL 617 (617)
||||+||+||||||.-+|+++
T Consensus 154 SGGQQQR~aIARaLameP~vm 174 (256)
T COG4598 154 SGGQQQRVAIARALAMEPEVM 174 (256)
T ss_pred CchHHHHHHHHHHHhcCCceE
Confidence 999999999999999999864
No 352
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=1.1e-22 Score=182.17 Aligned_cols=148 Identities=30% Similarity=0.527 Sum_probs=119.5
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEe--CCCCC----HHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD--ICEVT----LESL 531 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~--i~~~~----~~~l 531 (617)
.|+++|++|.|.. ..+|.||+|+.+.||.+.+.||||+|||||++.|-=+--|.+|+..|-|.. .++.. ...+
T Consensus 2 sirv~~in~~yg~-~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l 80 (242)
T COG4161 2 SIQLNGINCFYGA-HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80 (242)
T ss_pred ceEEccccccccc-chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence 5899999999963 478999999999999999999999999999999999999999999997753 33332 4578
Q ss_pred hcceEEEccCCCcc-cccHHHHHhcCC---CCCCHH----HHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 532 RKSIGVVPQDTVLF-NDTIFHNIRYGR---LSATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 532 r~~i~~V~Qd~~LF-~gTIreNI~~g~---~~~~de----~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
|+.+|+|+|.-.|+ .-|+-||+.=.. -..+++ +-.+.+++..+.++-+++| ..|||||.||
T Consensus 81 r~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggqqqr 149 (242)
T COG4161 81 RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQQQR 149 (242)
T ss_pred HHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccchhhh
Confidence 99999999999998 569999984220 012333 2344556667777776666 5699999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
+||||||..+|++|
T Consensus 150 vaiaralmmkpqvl 163 (242)
T COG4161 150 VAIARALMMEPQVL 163 (242)
T ss_pred HHHHHHHhcCCcEE
Confidence 99999999999875
No 353
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.87 E-value=2.2e-22 Score=244.93 Aligned_cols=143 Identities=24% Similarity=0.295 Sum_probs=110.9
Q ss_pred cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCC----CCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCccc-
Q 007122 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF----DTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN- 546 (617)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~----~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~- 546 (617)
+++|+|+|+++++||.++|+||||||||||+|+|+|+. .|.+|+|.+||.++.+.. ..+|+.++||+|++.+|.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 45899999999999999999999999999999999986 579999999999987654 346778999999988776
Q ss_pred ccHHHHHhcCC----C-----CCCHHHHHHHHHHHcHHHHHHhCCCCccccccC-CCCCCChHHHHHHHHHHHHhCCCCC
Q 007122 547 DTIFHNIRYGR----L-----SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGE-RGLKLSGGEKQRVALARAFLKAPPI 616 (617)
Q Consensus 547 gTIreNI~~g~----~-----~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge-~G~~LSGGQrQRlaiARAll~~p~I 616 (617)
-|++||+.++. | +.+.++..+...+.-++. ..|.+-.||.||+ ....||||||||++|||||+.+|+|
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMAT--YGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHH--cCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 59999998751 1 123333222111111111 1345557889986 4567999999999999999999998
Q ss_pred C
Q 007122 617 L 617 (617)
Q Consensus 617 L 617 (617)
|
T Consensus 231 l 231 (1394)
T TIGR00956 231 Q 231 (1394)
T ss_pred E
Confidence 5
No 354
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=6.5e-22 Score=224.79 Aligned_cols=145 Identities=23% Similarity=0.348 Sum_probs=104.9
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|+++||+++|+ ++++|+|+||+|++|+++||||+||||||||+++|+|+++|++|+|.++|.. .++|+
T Consensus 2 i~i~nls~~~g-~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~~~ 69 (638)
T PRK10636 2 IVFSSLQIRRG-VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLAWV 69 (638)
T ss_pred EEEEEEEEEeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEEEE
Confidence 78999999996 4679999999999999999999999999999999999999999999999842 48999
Q ss_pred ccCCCcccccHHHHHhcCCCCC---CH-----------HHHHHH---HH-------HHcHHHHHHhCCCCcc-ccccCCC
Q 007122 539 PQDTVLFNDTIFHNIRYGRLSA---TE-----------EEVYDA---AR-------RAAIHDTIMNFPAKYS-TVVGERG 593 (617)
Q Consensus 539 ~Qd~~LF~gTIreNI~~g~~~~---~d-----------e~i~~a---~~-------~a~l~~~I~~lp~Gld-T~vge~G 593 (617)
+|++..+..|..+.+.-..... +. ..+... .. ...+.+.+..+ |+. ......-
T Consensus 70 ~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~~~ 147 (638)
T PRK10636 70 NQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLERPV 147 (638)
T ss_pred ecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcCch
Confidence 9976656667666553211000 00 000000 00 11223334443 332 1233445
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCC
Q 007122 594 LKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 594 ~~LSGGQrQRlaiARAll~~p~IL 617 (617)
..||||||||++|||||+.+|++|
T Consensus 148 ~~LSgGerqRv~LA~aL~~~P~lL 171 (638)
T PRK10636 148 SDFSGGWRMRLNLAQALICRSDLL 171 (638)
T ss_pred hhcCHHHHHHHHHHHHHccCCCEE
Confidence 679999999999999999999985
No 355
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.5e-22 Score=185.28 Aligned_cols=145 Identities=27% Similarity=0.490 Sum_probs=119.5
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
++.+|++..- ++..++.++||++.+||.+-|+||+|||||||+++|+|+.+|++|+|+++|.+++... +..+..+-|+
T Consensus 3 L~a~~L~~~R-~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~yL 80 (209)
T COG4133 3 LEAENLSCER-GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALLYL 80 (209)
T ss_pred chhhhhhhcc-CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHHHh
Confidence 3445555433 3568999999999999999999999999999999999999999999999999887654 3457778888
Q ss_pred ccCCCcc-cccHHHHHhcCCC---CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCC
Q 007122 539 PQDTVLF-NDTIFHNIRYGRL---SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (617)
Q Consensus 539 ~Qd~~LF-~gTIreNI~~g~~---~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p 614 (617)
...+-+= .-|+.||+.|+.. +.+++.+++|+..++|.++ +.+| + .+||-||+.|+||||-++..+
T Consensus 81 GH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp------~----~~LSAGQqRRvAlArL~ls~~ 149 (209)
T COG4133 81 GHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLP------V----GQLSAGQQRRVALARLWLSPA 149 (209)
T ss_pred hccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccc------h----hhcchhHHHHHHHHHHHcCCC
Confidence 8777665 5699999998753 2467899999999999764 3344 3 369999999999999999988
Q ss_pred CC
Q 007122 615 PI 616 (617)
Q Consensus 615 ~I 616 (617)
|+
T Consensus 150 pL 151 (209)
T COG4133 150 PL 151 (209)
T ss_pred Cc
Confidence 76
No 356
>PRK13409 putative ATPase RIL; Provisional
Probab=99.86 E-value=1.6e-22 Score=226.71 Aligned_cols=141 Identities=21% Similarity=0.276 Sum_probs=109.1
Q ss_pred EeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEE-----------ECCEeCCCCCHHH
Q 007122 462 DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR-----------IDGQDICEVTLES 530 (617)
Q Consensus 462 ~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~-----------idG~~i~~~~~~~ 530 (617)
++++.+|.+...+|++++ ++++|++++|+||||||||||+|+|+|+++|++|+|. ++|.++.++..+.
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 348899975557999999 9999999999999999999999999999999999998 9999886543221
Q ss_pred --Hhcc----eEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 007122 531 --LRKS----IGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (617)
Q Consensus 531 --lr~~----i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRl 604 (617)
.+.+ +.+++|.|.+|.+|++||+...+ ..+++.++++..++.+. ....-.+||||||||+
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~---~~~~~~~~l~~l~l~~~-----------~~~~~~~LSgGe~qrv 221 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD---ERGKLDEVVERLGLENI-----------LDRDISELSGGELQRV 221 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhhh---HHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHH
Confidence 1123 44555677788899999997531 23445556665555432 2233457999999999
Q ss_pred HHHHHHhCCCCCC
Q 007122 605 ALARAFLKAPPIL 617 (617)
Q Consensus 605 aiARAll~~p~IL 617 (617)
+|||||+++|++|
T Consensus 222 ~ia~al~~~p~ll 234 (590)
T PRK13409 222 AIAAALLRDADFY 234 (590)
T ss_pred HHHHHHhcCCCEE
Confidence 9999999999975
No 357
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.86 E-value=2.2e-21 Score=212.31 Aligned_cols=145 Identities=29% Similarity=0.503 Sum_probs=110.9
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++|++++| +++++|+|+||++.+|++|+|||++|||||||+|+|+|..+|++|+|...+. -+++|
T Consensus 3 ~i~~~~ls~~~-g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~~ 70 (530)
T COG0488 3 MITLENLSLAY-GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVGY 70 (530)
T ss_pred eEEEeeeEEee-CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEEE
Confidence 58999999999 5779999999999999999999999999999999999999999999999762 26999
Q ss_pred EccCCCcccc-cHHHHHhcCCCCCCH--HHHHHHHH-------------------------HHcHHHHHHhCCCCccccc
Q 007122 538 VPQDTVLFND-TIFHNIRYGRLSATE--EEVYDAAR-------------------------RAAIHDTIMNFPAKYSTVV 589 (617)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~~~~d--e~i~~a~~-------------------------~a~l~~~I~~lp~GldT~v 589 (617)
++|++.+.+. |++|.+..+.....+ .+..++.. .+.+...+..| |+...
T Consensus 71 l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~~- 147 (530)
T COG0488 71 LSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPDE- 147 (530)
T ss_pred eCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCcc-
Confidence 9999999965 999999877532111 11111110 02222233332 22222
Q ss_pred cCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 590 GERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 590 ge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
...-.+||||||-|++|||||+.+|+||
T Consensus 148 ~~~~~~LSGG~r~Rv~LA~aL~~~pDlL 175 (530)
T COG0488 148 DRPVSSLSGGWRRRVALARALLEEPDLL 175 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 2233579999999999999999999986
No 358
>PLN03140 ABC transporter G family member; Provisional
Probab=99.85 E-value=6.8e-22 Score=239.99 Aligned_cols=143 Identities=24% Similarity=0.344 Sum_probs=110.0
Q ss_pred cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCC---CCeEEECCEeCCCCCHHHHhcceEEEccCCCccc-c
Q 007122 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN-D 547 (617)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~---~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~-g 547 (617)
+++|+|+|++|+|||.++|+||||||||||+|+|+|+++|+ +|+|.+||.++.+... |+.++||+|++.+|. .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVP---RKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcc---cceeEEecccccCCCcC
Confidence 45899999999999999999999999999999999999998 9999999999876543 678999999987774 6
Q ss_pred cHHHHHhcCCC------------CCCHH----------HH---HHHHHHH------cHHHHHH--hCCCCccccccCCC-
Q 007122 548 TIFHNIRYGRL------------SATEE----------EV---YDAARRA------AIHDTIM--NFPAKYSTVVGERG- 593 (617)
Q Consensus 548 TIreNI~~g~~------------~~~de----------~i---~~a~~~a------~l~~~I~--~lp~GldT~vge~G- 593 (617)
|++||+.|+.. +.+.+ ++ .+++... -.++.++ .|.+-.||.||+..
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999987410 01111 11 1111110 1122333 34555689998654
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCC
Q 007122 594 LKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 594 ~~LSGGQrQRlaiARAll~~p~IL 617 (617)
..||||||||++||||++.+|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vl 358 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTL 358 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEE
Confidence 579999999999999999999975
No 359
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.84 E-value=9.1e-21 Score=215.84 Aligned_cols=144 Identities=22% Similarity=0.370 Sum_probs=102.4
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++||+++|+ ++++|+|+||+|++|+++||||+||||||||+++|+|+++|++|+|.++|.. .+++
T Consensus 3 ~l~i~~ls~~~~-~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~~ 70 (635)
T PRK11147 3 LISIHGAWLSFS-DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVAR 70 (635)
T ss_pred EEEEeeEEEEeC-CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEEE
Confidence 489999999996 4679999999999999999999999999999999999999999999998721 3678
Q ss_pred EccCCCc-ccccHHHHHhcCCC------------------CCCHHHHHHHH------H-------HHcHHHHHHhCCCCc
Q 007122 538 VPQDTVL-FNDTIFHNIRYGRL------------------SATEEEVYDAA------R-------RAAIHDTIMNFPAKY 585 (617)
Q Consensus 538 V~Qd~~L-F~gTIreNI~~g~~------------------~~~de~i~~a~------~-------~a~l~~~I~~lp~Gl 585 (617)
++|++.. ..+|+.+++..+.. +..++.+.... . ...+.+.++.+ |+
T Consensus 71 l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl 148 (635)
T PRK11147 71 LQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--GL 148 (635)
T ss_pred eccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--CC
Confidence 8887632 23566666532210 00011110000 0 11233334443 23
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 586 STVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 586 dT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
+ ....-..||||||||++|||||+.+|+||
T Consensus 149 ~--~~~~~~~LSgGekqRv~LAraL~~~P~lL 178 (635)
T PRK11147 149 D--PDAALSSLSGGWLRKAALGRALVSNPDVL 178 (635)
T ss_pred C--CCCchhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 2 12344679999999999999999999985
No 360
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.84 E-value=8.6e-21 Score=213.21 Aligned_cols=153 Identities=35% Similarity=0.497 Sum_probs=122.9
Q ss_pred cceEEEeEEEeecCC----cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC---CCCeEEECCEeCCCCCHH
Q 007122 457 GSIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT---HSGSIRIDGQDICEVTLE 529 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p---~~G~I~idG~~i~~~~~~ 529 (617)
.+++++|++..-+.. +.+|+|+|.+++|||..||.||||||||||++.|+|-.++ .+|+|++|| +..+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG---~~~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNG---RPRDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECC---ccCchh
Confidence 468999999887643 6899999999999999999999999999999999998874 899999999 456678
Q ss_pred HHhcceEEEccCCCcc-cccHHHHHhcCC----C-CCCHHHHHHHHHHHcHHHHHHhCCCC--ccccccC-CCCCCChHH
Q 007122 530 SLRKSIGVVPQDTVLF-NDTIFHNIRYGR----L-SATEEEVYDAARRAAIHDTIMNFPAK--YSTVVGE-RGLKLSGGE 600 (617)
Q Consensus 530 ~lr~~i~~V~Qd~~LF-~gTIreNI~~g~----~-~~~de~i~~a~~~a~l~~~I~~lp~G--ldT~vge-~G~~LSGGQ 600 (617)
.+++..|||+||..++ +-|++|++.|.. | +.+.++..+.++ +.|.+|..- -||.||. ++..+||||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~-----~vi~~LgL~~~~~t~ig~~~~rgiSGGE 175 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVE-----EVISELGLEKCADTLIGNPGIRGLSGGE 175 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHH-----HHHHHcCChhhccceecCCCCCccccch
Confidence 9999999999999988 559999997642 2 224343322222 333333322 5788884 346799999
Q ss_pred HHHHHHHHHHhCCCCCC
Q 007122 601 KQRVALARAFLKAPPIL 617 (617)
Q Consensus 601 rQRlaiARAll~~p~IL 617 (617)
|+|++||--|+.||+||
T Consensus 176 rkRvsia~Ell~~P~iL 192 (613)
T KOG0061|consen 176 RKRVSIALELLTDPSIL 192 (613)
T ss_pred hhHHHHHHHHHcCCCEE
Confidence 99999999999999986
No 361
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.83 E-value=1.1e-20 Score=179.58 Aligned_cols=103 Identities=27% Similarity=0.365 Sum_probs=80.3
Q ss_pred CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHH
Q 007122 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIF 550 (617)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIr 550 (617)
..++|+|+||+|++|++++|+||||||||||+++++ +++|+|.++|.. .. ..+..++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~----~~~~~~~~~~q---------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PK----FSRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-cc----cccccEEEEhH----------
Confidence 357999999999999999999999999999999986 379999998762 11 12445888887
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCC--CCCC
Q 007122 551 HNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA--PPIL 617 (617)
Q Consensus 551 eNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~--p~IL 617 (617)
.+ +++.++-+.. ...+....||||||||++||||++++ |+++
T Consensus 68 ---------------~~---------~l~~~~L~~~-~~~~~~~~LSgGq~qrl~laral~~~~~p~ll 111 (176)
T cd03238 68 ---------------LQ---------FLIDVGLGYL-TLGQKLSTLSGGELQRVKLASELFSEPPGTLF 111 (176)
T ss_pred ---------------HH---------HHHHcCCCcc-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEE
Confidence 12 3333332211 25667789999999999999999999 9874
No 362
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.83 E-value=1.2e-20 Score=191.74 Aligned_cols=152 Identities=28% Similarity=0.455 Sum_probs=119.3
Q ss_pred ceEEEeEEEeec--C-CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC-----CCCeEEECCEeCCCCCHH
Q 007122 458 SIQFDNVHFSYL--T-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEVTLE 529 (617)
Q Consensus 458 ~I~~~nvsF~Y~--~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p-----~~G~I~idG~~i~~~~~~ 529 (617)
-++++|++.+|. + ...+++++||+|++||++|+||+||||||--++.++||++. .+|+|.++|.|+-..+.+
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 478999988885 2 35899999999999999999999999999999999999864 579999999999999988
Q ss_pred HHhc----ceEEEccCCCcc-------cccHHHHHhcCCC---CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCC
Q 007122 530 SLRK----SIGVVPQDTVLF-------NDTIFHNIRYGRL---SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLK 595 (617)
Q Consensus 530 ~lr~----~i~~V~Qd~~LF-------~gTIreNI~~g~~---~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~ 595 (617)
.+|+ +|++|+|||.-= ..-|.|-|.+.+- ..-.+++.+.++.+|+.+ |+ -.+..--..
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~-----p~---~rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPE-----PE---KRLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCc-----hh---hhhhhCCcc
Confidence 8875 799999999621 1224455554321 223455666777776654 21 123445678
Q ss_pred CChHHHHHHHHHHHHhCCCCCC
Q 007122 596 LSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 596 LSGGQrQRlaiARAll~~p~IL 617 (617)
||||||||+.||-||..+|++|
T Consensus 158 LSGGqRQRVMIAMALan~P~lL 179 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLL 179 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeE
Confidence 9999999999999999999986
No 363
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=6.2e-20 Score=174.86 Aligned_cols=150 Identities=27% Similarity=0.394 Sum_probs=120.6
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcC--CCCCCCeEEECCEeCCCCCHHHH-hcc
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--FDTHSGSIRIDGQDICEVTLESL-RKS 534 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl--~~p~~G~I~idG~~i~~~~~~~l-r~~ 534 (617)
.++++|++.+-.+.+++|+++||+|++||..||.||+|||||||.+.|+|. |++++|+|.+||.|+.++++++. |.-
T Consensus 3 ~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~G 82 (251)
T COG0396 3 MLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAG 82 (251)
T ss_pred eeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcC
Confidence 478999988775436999999999999999999999999999999999996 58899999999999999999986 556
Q ss_pred eEEEccCCCcccc-cHHHHHhcCCC------C---CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 007122 535 IGVVPQDTVLFND-TIFHNIRYGRL------S---ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (617)
Q Consensus 535 i~~V~Qd~~LF~g-TIreNI~~g~~------~---~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRl 604 (617)
|.+..|.|.=+.| |+.+=+..+.. . ...+++.++++..++++.. ++..|+ ..+|||||.|.
T Consensus 83 ifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~------l~R~vN---~GFSGGEkKR~ 153 (251)
T COG0396 83 IFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEF------LERYVN---EGFSGGEKKRN 153 (251)
T ss_pred CEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHH------hhcccC---CCcCcchHHHH
Confidence 9999999998887 67776653311 1 1245566666666666522 222333 34999999999
Q ss_pred HHHHHHhCCCCC
Q 007122 605 ALARAFLKAPPI 616 (617)
Q Consensus 605 aiARAll~~p~I 616 (617)
.|+-+++-+|++
T Consensus 154 EilQ~~~lePkl 165 (251)
T COG0396 154 EILQLLLLEPKL 165 (251)
T ss_pred HHHHHHhcCCCE
Confidence 999999999985
No 364
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.81 E-value=3.1e-19 Score=195.47 Aligned_cols=140 Identities=32% Similarity=0.464 Sum_probs=118.3
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~ 536 (617)
.-++++|++|+|++++++++++||.|++|++||||||+|+|||||+|+|+|...|.+|+|.++-. -++|
T Consensus 320 ~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~ig 388 (530)
T COG0488 320 LVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VKIG 388 (530)
T ss_pred eeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eEEE
Confidence 46999999999987789999999999999999999999999999999999999999999998642 2699
Q ss_pred EEccCC-Ccc-cccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCC
Q 007122 537 VVPQDT-VLF-NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (617)
Q Consensus 537 ~V~Qd~-~LF-~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p 614 (617)
|.+|+. .++ +.|+.|++.-..|+..+.++...+.+.++...- +...-..||||||-|+.||+.++.+|
T Consensus 389 yf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~----------~~~~v~~LSGGEk~Rl~La~ll~~~p 458 (530)
T COG0488 389 YFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGED----------QEKPVGVLSGGEKARLLLAKLLLQPP 458 (530)
T ss_pred EEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHH----------HhCchhhcCHhHHHHHHHHHHhccCC
Confidence 999988 344 448999998776666678888888887664322 12334579999999999999999999
Q ss_pred CCC
Q 007122 615 PIL 617 (617)
Q Consensus 615 ~IL 617 (617)
.+|
T Consensus 459 NvL 461 (530)
T COG0488 459 NLL 461 (530)
T ss_pred CEE
Confidence 875
No 365
>PLN03073 ABC transporter F family; Provisional
Probab=99.81 E-value=3.1e-20 Score=212.03 Aligned_cols=158 Identities=22% Similarity=0.295 Sum_probs=107.2
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCC---CCCCCeEEECCEeCC--CCCH---
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF---DTHSGSIRIDGQDIC--EVTL--- 528 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~---~p~~G~I~idG~~i~--~~~~--- 528 (617)
..|+++|++|+|+ ++++|+|+||+|++|+++||||+||||||||+++|+|.. .|.+|+|.+.++++. +.+.
T Consensus 176 ~~I~i~nls~~y~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~ 254 (718)
T PLN03073 176 KDIHMENFSISVG-GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQC 254 (718)
T ss_pred eeEEEceEEEEeC-CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHH
Confidence 3699999999996 456999999999999999999999999999999999864 589999987555432 1111
Q ss_pred ---------HHHhcceEEEccCCCcccccHHHHHhcCC-CCCCH----HHHHHHHHHHcH----------HHHHHhCCCC
Q 007122 529 ---------ESLRKSIGVVPQDTVLFNDTIFHNIRYGR-LSATE----EEVYDAARRAAI----------HDTIMNFPAK 584 (617)
Q Consensus 529 ---------~~lr~~i~~V~Qd~~LF~gTIreNI~~g~-~~~~d----e~i~~a~~~a~l----------~~~I~~lp~G 584 (617)
..++..+++++|++.+...+..+|..... ...+. +++.++++..++ .+.+..+ |
T Consensus 255 v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l--g 332 (718)
T PLN03073 255 VLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL--S 332 (718)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC--C
Confidence 12355688999988765555555543211 01122 223333332222 1222222 2
Q ss_pred cccc-ccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 585 YSTV-VGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 585 ldT~-vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
++.. ....-..||||||||++|||||+.+|++|
T Consensus 333 l~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lL 366 (718)
T PLN03073 333 FTPEMQVKATKTFSGGWRMRIALARALFIEPDLL 366 (718)
T ss_pred CChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 2211 12233579999999999999999999985
No 366
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.79 E-value=6.7e-20 Score=169.71 Aligned_cols=148 Identities=23% Similarity=0.366 Sum_probs=120.8
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECC-EeCCCCCHHHH-hcce
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG-QDICEVTLESL-RKSI 535 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG-~~i~~~~~~~l-r~~i 535 (617)
.++++||+.+++ +-.+|+|+||+|.|||.=+|+||+|+||||++..+.|.-+|++|+++++| .|+..++.... |..|
T Consensus 5 iL~~~~vsVsF~-GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GI 83 (249)
T COG4674 5 ILYLDGVSVSFG-GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGI 83 (249)
T ss_pred eEEEeceEEEEc-ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhcc
Confidence 578999999986 44689999999999999999999999999999999999999999999999 99999997765 5569
Q ss_pred EEEccCCCccc-ccHHHHHhcCCC---C--------C---CHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHH
Q 007122 536 GVVPQDTVLFN-DTIFHNIRYGRL---S--------A---TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGE 600 (617)
Q Consensus 536 ~~V~Qd~~LF~-gTIreNI~~g~~---~--------~---~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQ 600 (617)
|==+|.|..|. -|++||+.+... . . ..+++.+.+...+|.+ ....-...||-||
T Consensus 84 GRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~-----------~~~~~A~~LSHGq 152 (249)
T COG4674 84 GRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGD-----------ERDRLAALLSHGQ 152 (249)
T ss_pred CccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccch-----------hhhhhhhhhccch
Confidence 99999999995 599999966421 0 1 1123444444444433 2334457899999
Q ss_pred HHHHHHHHHHhCCCCCC
Q 007122 601 KQRVALARAFLKAPPIL 617 (617)
Q Consensus 601 rQRlaiARAll~~p~IL 617 (617)
||++.|+--+..+|++|
T Consensus 153 KQwLEIGMll~Q~P~lL 169 (249)
T COG4674 153 KQWLEIGMLLAQDPKLL 169 (249)
T ss_pred hhhhhhheeeccCCcEE
Confidence 99999999999999875
No 367
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.76 E-value=1.5e-18 Score=166.28 Aligned_cols=148 Identities=22% Similarity=0.466 Sum_probs=121.8
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.+++++|+.+|. ++.+++|+||+++||++.+++|++|+||||.+++|+|+.+|++|+|.++|.+++. ..+++|||
T Consensus 2 ~L~ie~vtK~Fg-~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIGy 76 (300)
T COG4152 2 ALEIEGVTKSFG-DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIGY 76 (300)
T ss_pred ceEEecchhccC-ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhccc
Confidence 478999999995 5689999999999999999999999999999999999999999999999988764 56778999
Q ss_pred EccCCCcc-cccHHHHHhcCC--CCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCC
Q 007122 538 VPQDTVLF-NDTIFHNIRYGR--LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (617)
Q Consensus 538 V~Qd~~LF-~gTIreNI~~g~--~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p 614 (617)
.|-|--|+ ..|+.|-|.|.. ...+.+|+.. .+..|++++.-.- .-..+-..||-|-.|+|-+--|++++|
T Consensus 77 LPEERGLy~k~tv~dql~yla~LkGm~~~e~~~-----~~~~wLer~~i~~--~~~~kIk~LSKGnqQKIQfisaviHeP 149 (300)
T COG4152 77 LPEERGLYPKMTVEDQLKYLAELKGMPKAEIQK-----KLQAWLERLEIVG--KKTKKIKELSKGNQQKIQFISAVIHEP 149 (300)
T ss_pred ChhhhccCccCcHHHHHHHHHHhcCCcHHHHHH-----HHHHHHHhccccc--cccchHHHhhhhhhHHHHHHHHHhcCC
Confidence 99999999 569999998753 2355555532 3445677654211 122445679999999999999999999
Q ss_pred CCC
Q 007122 615 PIL 617 (617)
Q Consensus 615 ~IL 617 (617)
+++
T Consensus 150 eLl 152 (300)
T COG4152 150 ELL 152 (300)
T ss_pred CEE
Confidence 874
No 368
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=2.6e-18 Score=166.00 Aligned_cols=124 Identities=31% Similarity=0.376 Sum_probs=95.9
Q ss_pred cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHH
Q 007122 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFH 551 (617)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIre 551 (617)
.++|+||||++++||+++|||++|||||||+|+|+|.|+|++|+|.++|.--.-+.. ..|+- -+-|-||
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~l-----g~Gf~------pelTGre 108 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIEL-----GAGFD------PELTGRE 108 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhc-----ccCCC------cccchHH
Confidence 468999999999999999999999999999999999999999999999942111110 12222 2458899
Q ss_pred HHhcCC--CCCC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 552 NIRYGR--LSAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 552 NI~~g~--~~~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
||.+-. ...+ ++.+.+..+-|+|.||++. | -.+.|-|.+-|||+|=|.--+|+||
T Consensus 109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~-P----------vktYSSGM~aRLaFsia~~~~pdIL 169 (249)
T COG1134 109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQ-P----------VKTYSSGMYARLAFSVATHVEPDIL 169 (249)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhC-c----------hhhccHHHHHHHHHhhhhhcCCCEE
Confidence 995421 1233 4455666777888888754 3 2579999999999999999999986
No 369
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=3.9e-18 Score=154.52 Aligned_cols=147 Identities=32% Similarity=0.474 Sum_probs=100.3
Q ss_pred ceEEEeEEEeec----CC--cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEEC--C--EeCCCCC
Q 007122 458 SIQFDNVHFSYL----TE--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID--G--QDICEVT 527 (617)
Q Consensus 458 ~I~~~nvsF~Y~----~~--~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~id--G--~~i~~~~ 527 (617)
.+.++||+.++. ++ -||++|+||+++.||++.+=||||||||||++.|-+-|.|++|+|.+. | +|+-.-.
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 477888876663 22 389999999999999999999999999999999999999999999983 2 2333333
Q ss_pred HH----HHhcceEEEccCCCcccc-----cHHHHH-hcCCCCCCHHHHH----HHHHHHcHHHHHHhCCCCccccccCCC
Q 007122 528 LE----SLRKSIGVVPQDTVLFND-----TIFHNI-RYGRLSATEEEVY----DAARRAAIHDTIMNFPAKYSTVVGERG 593 (617)
Q Consensus 528 ~~----~lr~~i~~V~Qd~~LF~g-----TIreNI-~~g~~~~~de~i~----~a~~~a~l~~~I~~lp~GldT~vge~G 593 (617)
+. -.|+.||||+|---.... -+.|-+ ..| .+.|.-. +.+.+.+ +|+.+-. ---
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~g---v~~~~a~~~a~~Ll~rLn-------lperLW~---LaP 150 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARG---VPREVARAKAADLLTRLN-------LPERLWS---LAP 150 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcC-------CCHHHhc---CCC
Confidence 33 346679999994332221 122222 223 2222221 1222223 3443322 124
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCC
Q 007122 594 LKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 594 ~~LSGGQrQRlaiARAll~~p~IL 617 (617)
..+||||+||+.|||.++-|-+||
T Consensus 151 aTFSGGEqQRVNIaRgfivd~pIL 174 (235)
T COG4778 151 ATFSGGEQQRVNIARGFIVDYPIL 174 (235)
T ss_pred cccCCchheehhhhhhhhccCceE
Confidence 689999999999999999998775
No 370
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.72 E-value=4.3e-18 Score=146.34 Aligned_cols=76 Identities=29% Similarity=0.280 Sum_probs=72.4
Q ss_pred cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHH
Q 007122 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFH 551 (617)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIre 551 (617)
.++|++++|++++|+.++|+||||||||||++++. +|++.++|.|+..++.++.++.++++||+ +|++||||
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 46899999999999999999999999999999986 89999999999999999999999999998 99999999
Q ss_pred HHhc
Q 007122 552 NIRY 555 (617)
Q Consensus 552 NI~~ 555 (617)
||.+
T Consensus 74 Ni~~ 77 (107)
T cd00820 74 NIFL 77 (107)
T ss_pred hcee
Confidence 9987
No 371
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=2.6e-17 Score=149.68 Aligned_cols=150 Identities=25% Similarity=0.360 Sum_probs=107.7
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECC-----EeCCCCCHHH--
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG-----QDICEVTLES-- 530 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG-----~~i~~~~~~~-- 530 (617)
-++++++|..|.+. .-.+|+||++.|||..+|||+||||||||+++|.+-..|++|+|.++- .|+-.++..+
T Consensus 6 LL~V~~lsk~Yg~~-~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR 84 (258)
T COG4107 6 LLSVSGLSKLYGPG-KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERR 84 (258)
T ss_pred ceeehhhhhhhCCC-cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHH
Confidence 47889999999744 468999999999999999999999999999999999999999999865 3333444333
Q ss_pred --HhcceEEEccCCC--c-c----cccHHHHH-hcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHH
Q 007122 531 --LRKSIGVVPQDTV--L-F----NDTIFHNI-RYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGE 600 (617)
Q Consensus 531 --lr~~i~~V~Qd~~--L-F----~gTIreNI-~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQ 600 (617)
+|..-|+|.|+|- | . .+.|-|-+ ..|...+ --+ ++...+|+++..-. .+.+.+.-..+|||.
T Consensus 85 ~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHY------G~i-R~~a~~WL~~VEI~-~~RiDD~PrtFSGGM 156 (258)
T COG4107 85 RLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHY------GNI-RAEAQDWLEEVEID-LDRIDDLPRTFSGGM 156 (258)
T ss_pred HHhhhccceeecCccccceeeeccCCccchhHHhhhhhhh------hhH-HHHHHHHHHhcccC-cccccCcccccchHH
Confidence 4567899999994 1 0 11122221 1111111 111 22334566654433 245677889999999
Q ss_pred HHHHHHHHHHhCCCCC
Q 007122 601 KQRVALARAFLKAPPI 616 (617)
Q Consensus 601 rQRlaiARAll~~p~I 616 (617)
+||+-|||-|+..|++
T Consensus 157 qQRLQiARnLVt~PrL 172 (258)
T COG4107 157 QQRLQIARNLVTRPRL 172 (258)
T ss_pred HHHHHHHHHhccCCce
Confidence 9999999999999976
No 372
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.71 E-value=1.1e-17 Score=162.91 Aligned_cols=137 Identities=27% Similarity=0.420 Sum_probs=96.2
Q ss_pred ccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc-cCCCcc-cccHH
Q 007122 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP-QDTVLF-NDTIF 550 (617)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~-Qd~~LF-~gTIr 550 (617)
++.+|+||+||||++++++|++|+||||++|+|.|+..|++|.|.++|.+=.+ +.+++-+++++|. |...+. +--+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHhhhhheeeeechhh
Confidence 58999999999999999999999999999999999999999999999987655 3444444666553 332221 11133
Q ss_pred HHHhcCC--CCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 551 HNIRYGR--LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 551 eNI~~g~--~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
|-+.... -+++|++..+- ++.+++-| +++..+-..-..||-|||-|..||-||+++|++|
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r-----~~~l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VL 178 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAER-----LDFLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVL 178 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHH-----HHHHHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEE
Confidence 3222110 03444443222 22223322 3555566667889999999999999999999985
No 373
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.70 E-value=9.4e-18 Score=163.02 Aligned_cols=113 Identities=27% Similarity=0.372 Sum_probs=84.0
Q ss_pred eeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCC---------CeEEECCEeCCCCCHHHHhcceEEEccCCCccc
Q 007122 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS---------GSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN 546 (617)
Q Consensus 476 ~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~---------G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~ 546 (617)
+++++++++| .++|+||||||||||+++|.|+..|.. |++.++|.+... ...+.++++|+|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCc-
Confidence 5789999999 999999999999999999999986653 468888877654 22467899999999888
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh----CCCCCC
Q 007122 547 DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL----KAPPIL 617 (617)
Q Consensus 547 gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll----~~p~IL 617 (617)
++. ..++++.++++. ++-.+ .....||||||||++||||+. ++|+++
T Consensus 89 --------~~~--~~~~~~~~~l~~----------~~~~~----~~~~~LS~G~kqrl~la~~l~~~~~~~~~il 139 (197)
T cd03278 89 --------YSI--ISQGDVSEIIEA----------PGKKV----QRLSLLSGGEKALTALALLFAIFRVRPSPFC 139 (197)
T ss_pred --------eeE--EehhhHHHHHhC----------CCccc----cchhhcCHHHHHHHHHHHHHHHhccCCCCEE
Confidence 221 123444444443 22223 344679999999999999986 456654
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.68 E-value=1.9e-17 Score=166.70 Aligned_cols=141 Identities=26% Similarity=0.350 Sum_probs=92.3
Q ss_pred ceEEEeEEE-eecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHh----------------cCCCCCCC------
Q 007122 458 SIQFDNVHF-SYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF----------------RSFDTHSG------ 514 (617)
Q Consensus 458 ~I~~~nvsF-~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~----------------gl~~p~~G------ 514 (617)
.|+++| | +|. +..++.+++ |++++|+||||||||||+++|+ ++..+.+|
T Consensus 3 ~i~~~n--fksy~-~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~ 74 (243)
T cd03272 3 QVIIQG--FKSYK-DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSA 74 (243)
T ss_pred EEEEeC--ccCcc-cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceE
Confidence 467776 4 354 456777776 8899999999999999999998 44455566
Q ss_pred --eEEECCEeCCCC---CHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHH--HhCCCCcc-
Q 007122 515 --SIRIDGQDICEV---TLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTI--MNFPAKYS- 586 (617)
Q Consensus 515 --~I~idG~~i~~~---~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I--~~lp~Gld- 586 (617)
+|.+++.+-... ....+++.++++||++.++. ...+.+++..+++..++.+.- ..+|+|..
T Consensus 75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~-----------~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~ 143 (243)
T cd03272 75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDK-----------KNVTKNDVMNLLESAGFSRSNPYYIVPQGKIN 143 (243)
T ss_pred EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECC-----------eEcCHHHHHHHHHHcCCCCCCCcEEEEcCchH
Confidence 666655322111 12235666888887766543 234566777777766554310 01223322
Q ss_pred ------ccccCCCCCCChHHHHHHHHHHHHh----CCCCCC
Q 007122 587 ------TVVGERGLKLSGGEKQRVALARAFL----KAPPIL 617 (617)
Q Consensus 587 ------T~vge~G~~LSGGQrQRlaiARAll----~~p~IL 617 (617)
....+.+..||||||||++||||++ ++|+++
T Consensus 144 ~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~il 184 (243)
T cd03272 144 SLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFY 184 (243)
T ss_pred HhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEE
Confidence 2245778899999999999999996 357764
No 375
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.66 E-value=5.8e-17 Score=170.76 Aligned_cols=140 Identities=24% Similarity=0.358 Sum_probs=115.6
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~ 536 (617)
..|.+.||+|+|+++..+++++||-|.+++++|+|||+|+|||||+|++.|...|+.|.|.-.-+ .+++
T Consensus 388 pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~~ 456 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKLP 456 (614)
T ss_pred CeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccch
Confidence 37999999999997778999999999999999999999999999999999999999999866432 2344
Q ss_pred EEcc---CCCcccccHHHHHhcCCC-CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhC
Q 007122 537 VVPQ---DTVLFNDTIFHNIRYGRL-SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612 (617)
Q Consensus 537 ~V~Q---d~~LF~gTIreNI~~g~~-~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~ 612 (617)
+-.| +..-.+-|.-|++.---+ .-..|++...+.+.|+....+..|. .+||+|||-||++||.+++
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch----------hhcccccchhHHHHHHHhc
Confidence 4444 344678888899854333 3567888889999999865555443 4799999999999999999
Q ss_pred CCCCC
Q 007122 613 APPIL 617 (617)
Q Consensus 613 ~p~IL 617 (617)
.|.||
T Consensus 527 qP~lL 531 (614)
T KOG0927|consen 527 QPHLL 531 (614)
T ss_pred CCcEE
Confidence 99875
No 376
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.65 E-value=6.1e-17 Score=159.62 Aligned_cols=134 Identities=17% Similarity=0.167 Sum_probs=94.8
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEe-CCcEEEEECCCcchHHHHHHHHh-cCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVP-AGKSVAIVGTSGSGKSTILRLLF-RSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~-~G~~vaIVG~SGsGKSTL~~LL~-gl~~p~~G~I~idG~~i~~~~~~~lr~~i 535 (617)
.|+++|+. +|.+. ++++|+.. +|+.++|+|+||||||||+++|. .+|.+..+....+ .....+.....+..|
T Consensus 5 ~i~l~nf~-~y~~~----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~v 78 (213)
T cd03279 5 KLELKNFG-PFREE----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAEV 78 (213)
T ss_pred EEEEECCc-CcCCc----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEEE
Confidence 68999987 77533 56677654 58999999999999999999999 5777777776654 223444555667789
Q ss_pred EEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCC-ccccccCCCCCCChHHHHHHHHHHHHhCC
Q 007122 536 GVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAK-YSTVVGERGLKLSGGEKQRVALARAFLKA 613 (617)
Q Consensus 536 ~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~G-ldT~vge~G~~LSGGQrQRlaiARAll~~ 613 (617)
++++|++.. ...++.++ ..+.+++.+.+. ++.| +++.+.....+||||||||++||||+..+
T Consensus 79 ~~~f~~~~~----~~~~~r~~--gl~~~~~~~~~~----------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~ 141 (213)
T cd03279 79 SFTFQLGGK----KYRVERSR--GLDYDQFTRIVL----------LPQGEFDRFLARPVSTLSGGETFLASLSLALALS 141 (213)
T ss_pred EEEEEECCe----EEEEEEec--CCCHHHHHHhhh----------hhhcchHHHhcCCccccCHHHHHHHHHHHHHHhH
Confidence 999999843 22333333 455555544321 1222 45556677889999999999999999853
No 377
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.64 E-value=3e-16 Score=184.03 Aligned_cols=150 Identities=24% Similarity=0.407 Sum_probs=123.2
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCC-CHHHHhcce
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV-TLESLRKSI 535 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~-~~~~lr~~i 535 (617)
..+..+|++..|+..+.+.+++|+.|++||+.++-|++||||||+++++.|...|++|++.++|.++..- +.+..++++
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 4789999999998544499999999999999999999999999999999999999999999999999754 455699999
Q ss_pred EEEccCCCccc-ccHHHHHhcCC--CCCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 007122 536 GVVPQDTVLFN-DTIFHNIRYGR--LSATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (617)
Q Consensus 536 ~~V~Qd~~LF~-gTIreNI~~g~--~~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiAR 608 (617)
||+||+..|++ -|.||.+.+.. .+... +.+...++..++.+..+ ++ -.++|||+|.||++|-
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~-------~~----~~~ySgG~kRkLs~ai 711 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYAN-------KQ----VRTYSGGNKRRLSFAI 711 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhc-------cc----hhhCCCcchhhHHHHH
Confidence 99999999885 49999996532 12222 23555555556655433 33 4689999999999999
Q ss_pred HHhCCCCCC
Q 007122 609 AFLKAPPIL 617 (617)
Q Consensus 609 All~~p~IL 617 (617)
|++.+|+++
T Consensus 712 alig~p~vi 720 (885)
T KOG0059|consen 712 ALIGDPSVI 720 (885)
T ss_pred HHhcCCCEE
Confidence 999999874
No 378
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.64 E-value=2.5e-16 Score=156.58 Aligned_cols=133 Identities=24% Similarity=0.313 Sum_probs=72.3
Q ss_pred CCcccceeeeEEEeCCcEEEEECCCcchHHHHH-HHHhcCCCCCCCeEEECC-------EeCCCC---CHHHHhc-ceEE
Q 007122 470 TERKILDGVSFVVPAGKSVAIVGTSGSGKSTIL-RLLFRSFDTHSGSIRIDG-------QDICEV---TLESLRK-SIGV 537 (617)
Q Consensus 470 ~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~-~LL~gl~~p~~G~I~idG-------~~i~~~---~~~~lr~-~i~~ 537 (617)
.+.++|+|+||+|++||+++|+|+||||||||+ ..+. .+|++.+.. ..+..+ .....+. ...+
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAI 80 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceE
Confidence 355899999999999999999999999999996 3332 234432210 011001 0111121 2344
Q ss_pred EccCCCc-cc-----ccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccc-cccCCCCCCChHHHHHHHHHHHH
Q 007122 538 VPQDTVL-FN-----DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYST-VVGERGLKLSGGEKQRVALARAF 610 (617)
Q Consensus 538 V~Qd~~L-F~-----gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT-~vge~G~~LSGGQrQRlaiARAl 610 (617)
..|++.. ++ +++.+...+...-...++..+. .+.++.+ |+.. ........||||||||++||||+
T Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~laral 152 (226)
T cd03270 81 AIDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRER------LGFLVDV--GLGYLTLSRSAPTLSGGEAQRIRLATQI 152 (226)
T ss_pred EecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHH------HHHHHHC--CCCcccccCccCcCCHHHHHHHHHHHHH
Confidence 4454431 11 1222222111000011111111 1233333 2332 25567788999999999999999
Q ss_pred hCCCC
Q 007122 611 LKAPP 615 (617)
Q Consensus 611 l~~p~ 615 (617)
+++|+
T Consensus 153 ~~~p~ 157 (226)
T cd03270 153 GSGLT 157 (226)
T ss_pred HhCCC
Confidence 99984
No 379
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.62 E-value=2.6e-16 Score=158.56 Aligned_cols=134 Identities=22% Similarity=0.331 Sum_probs=81.7
Q ss_pred ccceeeeEEEeCCcEEEEECCCcchHHHHHHHHh-----c-CC----CCCCCe-----------EEECCEeCCCCCHHH-
Q 007122 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF-----R-SF----DTHSGS-----------IRIDGQDICEVTLES- 530 (617)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~-----g-l~----~p~~G~-----------I~idG~~i~~~~~~~- 530 (617)
..|+|++++||.|..++|+|.||||||||++-++ + +. .|..++ |.+|..++..-....
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4699999999999999999999999999998552 1 22 133333 455555543322111
Q ss_pred ---------Hhc----------------ceEEEccCCC-cccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCC
Q 007122 531 ---------LRK----------------SIGVVPQDTV-LFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAK 584 (617)
Q Consensus 531 ---------lr~----------------~i~~V~Qd~~-LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~G 584 (617)
+|+ .+.|..++.. +.+-|+.||+.|.......++..+ .++.+ |
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~---------~L~~v--g 157 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQ---------TLCDV--G 157 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHH---------HHHHc--C
Confidence 111 1223333333 234566666665432111122222 23332 4
Q ss_pred ccc-cccCCCCCCChHHHHHHHHHHHHhCC---CCCC
Q 007122 585 YST-VVGERGLKLSGGEKQRVALARAFLKA---PPIL 617 (617)
Q Consensus 585 ldT-~vge~G~~LSGGQrQRlaiARAll~~---p~IL 617 (617)
++. ..++....||||||||++|||||.++ |+++
T Consensus 158 L~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~ll 194 (261)
T cd03271 158 LGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLY 194 (261)
T ss_pred CchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEE
Confidence 443 36778889999999999999999997 5653
No 380
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.61 E-value=6.7e-15 Score=154.68 Aligned_cols=152 Identities=25% Similarity=0.429 Sum_probs=120.6
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeC-CCCCHHHHhc-c
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI-CEVTLESLRK-S 534 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i-~~~~~~~lr~-~ 534 (617)
.-++++|++..=..+.+.++|+||++++||+++|.|-.|-|-+-|+.+|+|+.+|.+|+|.++|.|+ ...++..+|+ .
T Consensus 256 ~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G 335 (501)
T COG3845 256 VVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLG 335 (501)
T ss_pred eEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcC
Confidence 4689999998654445789999999999999999999999999999999999999999999999997 6778888766 5
Q ss_pred eEEEccCCC----cccccHHHHHhcCCCC---------CCHHHHHHHHHHHcHHHHHHhC---CCCccccccCCCCCCCh
Q 007122 535 IGVVPQDTV----LFNDTIFHNIRYGRLS---------ATEEEVYDAARRAAIHDTIMNF---PAKYSTVVGERGLKLSG 598 (617)
Q Consensus 535 i~~V~Qd~~----LF~gTIreNI~~g~~~---------~~de~i~~a~~~a~l~~~I~~l---p~GldT~vge~G~~LSG 598 (617)
++|||.|-+ ..+-|+.||+.++.-+ .+..++.+.++ +.|+++ +.+-+++ -.+|||
T Consensus 336 ~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~-----~li~~fdVr~~~~~~~----a~~LSG 406 (501)
T COG3845 336 LAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR-----ELIEEFDVRAPSPDAP----ARSLSG 406 (501)
T ss_pred CccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHH-----HHHHHcCccCCCCCcc----hhhcCC
Confidence 999999874 7788999999876422 12233333332 223332 3333333 457999
Q ss_pred HHHHHHHHHHHHhCCCCCC
Q 007122 599 GEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 599 GQrQRlaiARAll~~p~IL 617 (617)
|+.||+-+||-|.++|++|
T Consensus 407 GNqQK~IlaREl~~~p~lL 425 (501)
T COG3845 407 GNQQKLILARELARRPDLL 425 (501)
T ss_pred cceehhhhhhhhccCCCEE
Confidence 9999999999999999985
No 381
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.54 E-value=4e-15 Score=171.59 Aligned_cols=135 Identities=25% Similarity=0.361 Sum_probs=110.6
Q ss_pred CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC--CCCCeEEECCEeCCCCCHHHHhcceEEEcc-CCCcccc
Q 007122 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD--THSGSIRIDGQDICEVTLESLRKSIGVVPQ-DTVLFND 547 (617)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~--p~~G~I~idG~~i~~~~~~~lr~~i~~V~Q-d~~LF~g 547 (617)
.+.+|+|++=-++||..+|++|+||||||||++.|+|=-. ..+|+|++||.+..+ +..++.+|||.| |.++=.-
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence 3489999999999999999999999999999999998643 367999999998775 788999999998 5578788
Q ss_pred cHHHHHhcCC-----CCCCHHHH----HHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCC
Q 007122 548 TIFHNIRYGR-----LSATEEEV----YDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (617)
Q Consensus 548 TIreNI~~g~-----~~~~de~i----~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~ 615 (617)
||||-+.|.. .+.+++|- +++.+..++++. -|..||.-|..||..||.|+.||=-|+.||+
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrLTIgVELvA~P~ 949 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRLTIGVELVANPS 949 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhceeeEEEEEecCCc
Confidence 9999998752 24555553 334444444332 5678999999999999999999999999994
No 382
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.54 E-value=2.3e-15 Score=137.24 Aligned_cols=137 Identities=32% Similarity=0.397 Sum_probs=108.0
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
+.++||+.+ .-|-.+|.++..||.+=+|||+|||||||+.-++|+. |-+|+|.++|.|++..+..++.++=+|.
T Consensus 4 ~qln~v~~~-----tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYL 77 (248)
T COG4138 4 MQLNDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYL 77 (248)
T ss_pred eeecccccc-----ccccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHH
Confidence 567777642 2366789999999999999999999999999999976 6999999999999999999999999998
Q ss_pred ccC-CCcccccHHHHHhcCCCCCC-HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhC
Q 007122 539 PQD-TVLFNDTIFHNIRYGRLSAT-EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612 (617)
Q Consensus 539 ~Qd-~~LF~gTIreNI~~g~~~~~-de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~ 612 (617)
.|+ ...|...+..-+++..|+.+ -+++.+.+...++ |-.++..-..|||||.||+-+|-..+.
T Consensus 78 sQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l-----------~DKL~Rs~~qLSGGEWQRVRLAav~LQ 142 (248)
T COG4138 78 SQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALAL-----------DDKLGRSTNQLSGGEWQRVRLAAVVLQ 142 (248)
T ss_pred hhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcc-----------cchhhhhhhhcCcccceeeEEeEEEEE
Confidence 874 45888899999998876422 1233344444333 334555667899999999988866554
No 383
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.52 E-value=9.8e-15 Score=142.73 Aligned_cols=112 Identities=23% Similarity=0.226 Sum_probs=82.8
Q ss_pred eeEEEeCCcEEEEECCCcchHHHHHHHH----hcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCC-----Cccc-c
Q 007122 478 VSFVVPAGKSVAIVGTSGSGKSTILRLL----FRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDT-----VLFN-D 547 (617)
Q Consensus 478 isl~I~~G~~vaIVG~SGsGKSTL~~LL----~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~-----~LF~-g 547 (617)
.++++.+| +++|+|+||||||||++.| .|...|..|.+..+. +.+.....+..+++++|++ .++. -
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~---~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDP---KLIREGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchH---HHHhCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34566677 9999999999999999998 498888888776222 2222234567899999998 4433 2
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH------HHHHHHHhCCCCCC
Q 007122 548 TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR------VALARAFLKAPPIL 617 (617)
Q Consensus 548 TIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR------laiARAll~~p~IL 617 (617)
|+.||+.++. ++++.+.+ .+....||+||+|| ++||||+..+|+++
T Consensus 92 ~~~~~~~~~~----~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~il 143 (204)
T cd03240 92 AILENVIFCH----QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGIL 143 (204)
T ss_pred hHhhceeeec----hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEE
Confidence 9999997752 33332222 44567899999996 79999999999975
No 384
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.52 E-value=5.2e-15 Score=149.67 Aligned_cols=132 Identities=24% Similarity=0.267 Sum_probs=89.0
Q ss_pred CcEEEEECCCcchHHHHHHHHhcCCCCC-CCeEEECCE-eCCCCC--HHHHhcceEEEccCCCc----------ccccHH
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFRSFDTH-SGSIRIDGQ-DICEVT--LESLRKSIGVVPQDTVL----------FNDTIF 550 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~gl~~p~-~G~I~idG~-~i~~~~--~~~lr~~i~~V~Qd~~L----------F~gTIr 550 (617)
...++||||||||||||+++|+++..|. .|+++..|. |+-... ....+.++.+++|++-. -.-||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 6699999999999999999999998876 568888876 432111 11234589999998621 145788
Q ss_pred HHHhcCCC--------CCCHHHHHHHHHHHcHH----HH------HHhCCCCccccccCCCCCCChHHHHHHHHHHHHh-
Q 007122 551 HNIRYGRL--------SATEEEVYDAARRAAIH----DT------IMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL- 611 (617)
Q Consensus 551 eNI~~g~~--------~~~de~i~~a~~~a~l~----~~------I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll- 611 (617)
+||..+.. ....+++.++++.+++. .+ |.++-+. ..........||||||||++||||+.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNM-GGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHh-HHhhcccccccCHHHHHHHHHHHHHHH
Confidence 77755421 12446777777777763 00 0000000 02234566789999999999999997
Q ss_pred ---CCCCCC
Q 007122 612 ---KAPPIL 617 (617)
Q Consensus 612 ---~~p~IL 617 (617)
.+|+++
T Consensus 184 ~~~~~~~il 192 (251)
T cd03273 184 LLFKPAPMY 192 (251)
T ss_pred hhccCCCEE
Confidence 577764
No 385
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.52 E-value=6e-14 Score=150.48 Aligned_cols=154 Identities=27% Similarity=0.393 Sum_probs=120.4
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHH-HHhcceE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE-SLRKSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~-~lr~~i~ 536 (617)
.++++|++.. ..++|+||++++||+++|.|--|||+|-+++.|+|..++.+|+|.+||.+++--++. ..+..|+
T Consensus 263 ~l~v~~l~~~-----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~ 337 (500)
T COG1129 263 VLEVRNLSGG-----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIA 337 (500)
T ss_pred EEEEecCCCC-----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCE
Confidence 5778887642 258899999999999999999999999999999999889999999999999888765 7788899
Q ss_pred EEccCCC----cccccHHHHHhcCCC-CCCHH-HHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 007122 537 VVPQDTV----LFNDTIFHNIRYGRL-SATEE-EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (617)
Q Consensus 537 ~V~Qd~~----LF~gTIreNI~~g~~-~~~de-~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAl 610 (617)
|||-|=- +..-||++||++..- ....- -+.+..+++-..+++.+|.-.-.. ....-.+||||-+|++.|||.|
T Consensus 338 ~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s-~~~~v~~LSGGNQQKVvlarwL 416 (500)
T COG1129 338 YVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS-PEQPIGTLSGGNQQKVVLARWL 416 (500)
T ss_pred eCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCC-ccchhhcCCchhhhhHHHHHHH
Confidence 9997543 557799999987621 11101 244555666677777776432211 1234457999999999999999
Q ss_pred hCCCCCC
Q 007122 611 LKAPPIL 617 (617)
Q Consensus 611 l~~p~IL 617 (617)
..+|++|
T Consensus 417 ~~~p~vL 423 (500)
T COG1129 417 ATDPKVL 423 (500)
T ss_pred hcCCCEE
Confidence 9999986
No 386
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=2.4e-14 Score=146.83 Aligned_cols=139 Identities=28% Similarity=0.407 Sum_probs=108.0
Q ss_pred CcceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 007122 456 GGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (617)
Q Consensus 456 ~~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i 535 (617)
+.-+-+.||+|.||+.+|.+++++|-|.--++||||||+|.|||||++||.|-++|+.|+.+=+. |-+|
T Consensus 584 PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~i 652 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRI 652 (807)
T ss_pred CCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeee
Confidence 34678999999999999999999999999999999999999999999999999999999987653 4478
Q ss_pred EEEccCCC---cccccHHHHHh-cCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh
Q 007122 536 GVVPQDTV---LFNDTIFHNIR-YGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (617)
Q Consensus 536 ~~V~Qd~~---LF~gTIreNI~-~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll 611 (617)
|+-.|..- --..|-.|-+. .+ +.+.++-..++-..||... -+|. .-..||||||-|+++|---+
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~F--Nlpyq~ARK~LG~fGL~sH-------AHTi---kikdLSGGQKaRValaeLal 720 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKF--NLPYQEARKQLGTFGLASH-------AHTI---KIKDLSGGQKARVALAELAL 720 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhc--CCChHHHHHHhhhhhhhhc-------cceE---eeeecCCcchHHHHHHHHhc
Confidence 88887542 22345555553 22 2455566666666665432 1221 24679999999999999999
Q ss_pred CCCCCC
Q 007122 612 KAPPIL 617 (617)
Q Consensus 612 ~~p~IL 617 (617)
+.|+||
T Consensus 721 ~~PDvl 726 (807)
T KOG0066|consen 721 GGPDVL 726 (807)
T ss_pred CCCCEE
Confidence 999975
No 387
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.48 E-value=6.5e-15 Score=144.79 Aligned_cols=133 Identities=21% Similarity=0.265 Sum_probs=88.6
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHh-cceE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLR-KSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr-~~i~ 536 (617)
.|+++|.. +|. +..+++++++ +.++|+|||||||||++++|. .++|.+.. ..| ++++
T Consensus 5 ~l~l~nfk-~~~-~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-----~~~~~~i~ 62 (212)
T cd03274 5 KLVLENFK-SYA-GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-----KMRQKKLS 62 (212)
T ss_pred EEEEECcc-cCC-CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-----HhhhhhHH
Confidence 57888864 664 5578888887 899999999999999999997 33454332 233 5799
Q ss_pred EEccCCCcccc-cHHHHHhcCCCCCCHHHH-----HHHH-----HHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 007122 537 VVPQDTVLFND-TIFHNIRYGRLSATEEEV-----YDAA-----RRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605 (617)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~~~~de~i-----~~a~-----~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRla 605 (617)
+++|+..+++. |.++++.+.......+.+ .... ....+ ..+..||++.++.+ ..||+|||||++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~-~~~~~L~~~~~~~~----~~lS~G~~~r~~ 137 (212)
T cd03274 63 DLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEV-EQIAQMPKKSWKNI----SNLSGGEKTLSS 137 (212)
T ss_pred HHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcE-EEeeccccccccch----hhcCHHHHHHHH
Confidence 99999877654 777777554321111100 0000 00111 13455688877765 379999999999
Q ss_pred HHHHHhC----CCCCC
Q 007122 606 LARAFLK----APPIL 617 (617)
Q Consensus 606 iARAll~----~p~IL 617 (617)
||||++. +|+++
T Consensus 138 la~al~~~~~~~p~il 153 (212)
T cd03274 138 LALVFALHHYKPTPLY 153 (212)
T ss_pred HHHHHHhcccCCCCEE
Confidence 9999963 46764
No 388
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.4e-13 Score=144.83 Aligned_cols=138 Identities=29% Similarity=0.393 Sum_probs=90.8
Q ss_pred CcceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 007122 456 GGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (617)
Q Consensus 456 ~~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i 535 (617)
+.+|...|.+.+|. ++.+|++-++++..|-++++||++|+|||||++.|.. |.|..-.++ +++|.--
T Consensus 78 ~~Di~~~~fdLa~G-~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g~~ 144 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYG-GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRGDD 144 (582)
T ss_pred ccceeeeeeeeeec-chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheeccc
Confidence 45799999999997 6789999999999999999999999999999999998 443322211 1111111
Q ss_pred EEEccCCCcccccHHHHHhcCCCC----CCHHHHHH-HHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 007122 536 GVVPQDTVLFNDTIFHNIRYGRLS----ATEEEVYD-AARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (617)
Q Consensus 536 ~~V~Qd~~LF~gTIreNI~~g~~~----~~de~i~~-a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAl 610 (617)
....|+ .+-.+|-+.-+..-.+. .+-+|++. ++.-.|..+.....| -..||||=|-|+||||||
T Consensus 145 t~~~~~-~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~p----------t~slSGGWrMrlaLARAl 213 (582)
T KOG0062|consen 145 TEALQS-VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQP----------TKSLSGGWRMRLALARAL 213 (582)
T ss_pred hHHHhh-hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhcc----------ccccCcchhhHHHHHHHH
Confidence 111121 23334444433322110 13344444 444445444444444 246999999999999999
Q ss_pred hCCCCCC
Q 007122 611 LKAPPIL 617 (617)
Q Consensus 611 l~~p~IL 617 (617)
+++||||
T Consensus 214 f~~pDlL 220 (582)
T KOG0062|consen 214 FAKPDLL 220 (582)
T ss_pred hcCCCEE
Confidence 9999986
No 389
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.40 E-value=6.3e-13 Score=137.80 Aligned_cols=130 Identities=25% Similarity=0.367 Sum_probs=91.0
Q ss_pred eEEEeecCCcccceeeeEEEe-----CCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 463 NVHFSYLTERKILDGVSFVVP-----AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 463 nvsF~Y~~~~~vL~~isl~I~-----~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
+.-+.|++-..-+.++.|++. .||.++++||+|-||||++++|+|..+|++|. ..++ +++|
T Consensus 340 ~~lv~y~~~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~vSy 405 (591)
T COG1245 340 DTLVEYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KVSY 405 (591)
T ss_pred ceeeecchheeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eEee
Confidence 334556654445667777765 47889999999999999999999999999998 2222 5899
Q ss_pred EccCCC-cccccHHHHHhcCCCC-CCHHHH-HHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCC
Q 007122 538 VPQDTV-LFNDTIFHNIRYGRLS-ATEEEV-YDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (617)
Q Consensus 538 V~Qd~~-LF~gTIreNI~~g~~~-~~de~i-~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p 614 (617)
=||-.. -|+||+++=+.-..++ ..+.-. .+.++ |-.++-.+...-.+|||||-||+|||-||.+++
T Consensus 406 KPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~-----------pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reA 474 (591)
T COG1245 406 KPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVK-----------PLNLEDLLERPVDELSGGELQRVAIAAALSREA 474 (591)
T ss_pred cceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcC-----------ccchHHHHhcccccCCchhHHHHHHHHHhcccc
Confidence 999432 4899999877533322 111111 12222 333444444455689999999999999999999
Q ss_pred CCC
Q 007122 615 PIL 617 (617)
Q Consensus 615 ~IL 617 (617)
++.
T Consensus 475 DlY 477 (591)
T COG1245 475 DLY 477 (591)
T ss_pred CEE
Confidence 863
No 390
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.38 E-value=1.4e-12 Score=122.14 Aligned_cols=146 Identities=23% Similarity=0.354 Sum_probs=100.3
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCC-CCH-------
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE-VTL------- 528 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~-~~~------- 528 (617)
..|++.++.|+|+...|++-|+|+++|.|++..+||.+|||||||+|+|.|-.-...|.|.+.|.+--. -+.
T Consensus 12 ~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~ 91 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLS 91 (291)
T ss_pred ceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCcee
Confidence 479999999999977799999999999999999999999999999999999888888999999875422 111
Q ss_pred ---HHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 007122 529 ---ESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605 (617)
Q Consensus 529 ---~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRla 605 (617)
.+|++..++-- |..|-.+-=.|-+.+|-...+.++-.+. |.- +|-.+-=+=..+|-|||.|+.
T Consensus 92 YLGgeW~~~~~~ag-evplq~D~sae~mifgV~g~dp~Rre~L---------I~i----LDIdl~WRmHkvSDGqrRRVQ 157 (291)
T KOG2355|consen 92 YLGGEWSKTVGIAG-EVPLQGDISAEHMIFGVGGDDPERREKL---------IDI----LDIDLRWRMHKVSDGQRRRVQ 157 (291)
T ss_pred Eecccccccccccc-cccccccccHHHHHhhccCCChhHhhhh---------hhh----eeccceEEEeeccccchhhhH
Confidence 13444444433 2222222222333344222222222111 111 333344456789999999999
Q ss_pred HHHHHhCCCCC
Q 007122 606 LARAFLKAPPI 616 (617)
Q Consensus 606 iARAll~~p~I 616 (617)
|+--|++.-++
T Consensus 158 icMGLL~PfkV 168 (291)
T KOG2355|consen 158 ICMGLLKPFKV 168 (291)
T ss_pred HHHhcccceeE
Confidence 99999986554
No 391
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.35 E-value=1.8e-12 Score=157.20 Aligned_cols=146 Identities=22% Similarity=0.356 Sum_probs=91.9
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHH---------HHhcCCCCCCC----e----EEECC
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILR---------LLFRSFDTHSG----S----IRIDG 520 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~---------LL~gl~~p~~G----~----I~idG 520 (617)
.|+++|++. ..|+|+|++|++||+++|+|+||||||||++ +|.|...+..+ . |.+|-
T Consensus 600 ~L~l~~~~~------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQ 673 (1809)
T PRK00635 600 TLTLSKATK------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITR 673 (1809)
T ss_pred eEEEecccc------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecC
Confidence 588888762 3799999999999999999999999999999 56664333211 2 34554
Q ss_pred EeCCCCCH----------HHHh---------cc-----eEEEccC------------------C----------------
Q 007122 521 QDICEVTL----------ESLR---------KS-----IGVVPQD------------------T---------------- 542 (617)
Q Consensus 521 ~~i~~~~~----------~~lr---------~~-----i~~V~Qd------------------~---------------- 542 (617)
.++..-.. +++| ++ ..+.+|. +
T Consensus 674 spigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~ 753 (1809)
T PRK00635 674 DLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLP 753 (1809)
T ss_pred CCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCH
Confidence 44432111 1333 11 1122221 1
Q ss_pred ----Ccc-cccHHHHHhcCCCCC-----CHHHHHHHHHHHcHHHHHHhCCCCcccc-ccCCCCCCChHHHHHHHHHHHHh
Q 007122 543 ----VLF-NDTIFHNIRYGRLSA-----TEEEVYDAARRAAIHDTIMNFPAKYSTV-VGERGLKLSGGEKQRVALARAFL 611 (617)
Q Consensus 543 ----~LF-~gTIreNI~~g~~~~-----~de~i~~a~~~a~l~~~I~~lp~GldT~-vge~G~~LSGGQrQRlaiARAll 611 (617)
..+ .-||.||+.++..++ +.+++.+.++ .++.+ |++.. .++...+||||||||++|||||+
T Consensus 754 e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~------~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAraL~ 825 (1809)
T PRK00635 754 QVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIH------ALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAYELL 825 (1809)
T ss_pred HHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHH------HHHHc--CCcchhhcCccccCCHHHHHHHHHHHHHh
Confidence 122 238899998763211 1223333321 22322 56554 67888899999999999999998
Q ss_pred ---CCCCCC
Q 007122 612 ---KAPPIL 617 (617)
Q Consensus 612 ---~~p~IL 617 (617)
++|++|
T Consensus 826 ~~~~~P~LL 834 (1809)
T PRK00635 826 APSKKPTLY 834 (1809)
T ss_pred hcCCCCCEE
Confidence 588875
No 392
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.34 E-value=2.8e-12 Score=135.78 Aligned_cols=154 Identities=20% Similarity=0.284 Sum_probs=92.1
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~ 536 (617)
..|.++|++++|+ +.++++|..|++.+|++++|+|++||||||+++.+.|--.|..-.+.+-=.+ +++.+..+..
T Consensus 74 ~dvk~~sls~s~~-g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls-~e~~ps~~~a--- 148 (614)
T KOG0927|consen 74 RDVKIESLSLSFH-GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLS-REIEPSEKQA--- 148 (614)
T ss_pred ccceeeeeeeccC-CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhc-ccCCCchHHH---
Confidence 4799999999996 5688999999999999999999999999999999999888866555331110 1222221111
Q ss_pred EEccCCCcccccHH-------HHHhcCCCCCCHHH---HHHHHHHHcHHHHH----HhC-CCCcccccc-CCCCCCChHH
Q 007122 537 VVPQDTVLFNDTIF-------HNIRYGRLSATEEE---VYDAARRAAIHDTI----MNF-PAKYSTVVG-ERGLKLSGGE 600 (617)
Q Consensus 537 ~V~Qd~~LF~gTIr-------eNI~~g~~~~~de~---i~~a~~~a~l~~~I----~~l-p~GldT~vg-e~G~~LSGGQ 600 (617)
-|....+..+-+ |++.-..++...++ +++-+...+.+.+= +-| ..|+....- ..-.+|||||
T Consensus 149 --v~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGw 226 (614)
T KOG0927|consen 149 --VQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGW 226 (614)
T ss_pred --HHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchH
Confidence 011111222222 22222212212122 22222221111110 011 124433332 3457899999
Q ss_pred HHHHHHHHHHhCCCCCC
Q 007122 601 KQRVALARAFLKAPPIL 617 (617)
Q Consensus 601 rQRlaiARAll~~p~IL 617 (617)
|.|++|||||+.+|++|
T Consensus 227 rmR~aLAr~Lf~kP~LL 243 (614)
T KOG0927|consen 227 RMRAALARALFQKPDLL 243 (614)
T ss_pred HHHHHHHHHHhcCCCEE
Confidence 99999999999999975
No 393
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.34 E-value=2.9e-13 Score=136.51 Aligned_cols=132 Identities=20% Similarity=0.209 Sum_probs=86.3
Q ss_pred cEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEe-C------CCCCHHHHhcceEEEccCC--CcccccHHHHH-h-
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD-I------CEVTLESLRKSIGVVPQDT--VLFNDTIFHNI-R- 554 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~-i------~~~~~~~lr~~i~~V~Qd~--~LF~gTIreNI-~- 554 (617)
..++|+||+|||||||+.+|.++..+..|++..++.+ + ...+.....-.+.+..|++ .++..+++++- .
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999988888888765421 1 0111223344556665653 34555555542 1
Q ss_pred -cCCCCCCHHHHHHHHHHHcHHHHHHh--CCCCccccccCCC---------CCCChHHHHHHHHHHHHhCC----CCCC
Q 007122 555 -YGRLSATEEEVYDAARRAAIHDTIMN--FPAKYSTVVGERG---------LKLSGGEKQRVALARAFLKA----PPIL 617 (617)
Q Consensus 555 -~g~~~~~de~i~~a~~~a~l~~~I~~--lp~GldT~vge~G---------~~LSGGQrQRlaiARAll~~----p~IL 617 (617)
+.....+.+++.+.++..+++.+... +++|.-+.+.+.. ..||||||||++||||++.+ |+++
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~l 181 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFF 181 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEE
Confidence 12234677888888888888533211 2444444444332 67999999999999999754 7664
No 394
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.32 E-value=1.7e-12 Score=151.18 Aligned_cols=43 Identities=30% Similarity=0.483 Sum_probs=37.7
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHh
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~ 506 (617)
.|+++|++. ..|+|+|++|++|+.++|+|.||||||||++-++
T Consensus 614 ~L~v~~l~~------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l 656 (943)
T PRK00349 614 FLKLKGARE------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETL 656 (943)
T ss_pred eEEecCCcc------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHH
Confidence 588888852 3599999999999999999999999999998653
No 395
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=4.1e-12 Score=133.83 Aligned_cols=140 Identities=24% Similarity=0.337 Sum_probs=112.2
Q ss_pred CcceEEEeEEEeecCCc-ccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 007122 456 GGSIQFDNVHFSYLTER-KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534 (617)
Q Consensus 456 ~~~I~~~nvsF~Y~~~~-~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~ 534 (617)
+..+++.+|+|.|+++. +.+.+++++++.-+++++||++|+||||++|++.+-..|..|.+-+.+ |.+
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 34799999999998776 899999999999999999999999999999999999999999998876 568
Q ss_pred eEEEccCCCcc-cccHH--HHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCC-CCCChHHHHHHHHHHHH
Q 007122 535 IGVVPQDTVLF-NDTIF--HNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG-LKLSGGEKQRVALARAF 610 (617)
Q Consensus 535 i~~V~Qd~~LF-~gTIr--eNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G-~~LSGGQrQRlaiARAl 610 (617)
|+|-.|.-.=| +-.+. |-..-..|..++||+.+.|...|+...+ .-.. ..||||||-|+++|-..
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~l-----------a~~si~~LSGGQKsrvafA~~~ 497 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGEL-----------ALQSIASLSGGQKSRVAFAACT 497 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchh-----------hhccccccCCcchhHHHHHHHh
Confidence 99998865422 22221 1111123566899999998887665443 3334 56999999999999999
Q ss_pred hCCCCCC
Q 007122 611 LKAPPIL 617 (617)
Q Consensus 611 l~~p~IL 617 (617)
..+|.+|
T Consensus 498 ~~~PhlL 504 (582)
T KOG0062|consen 498 WNNPHLL 504 (582)
T ss_pred cCCCcEE
Confidence 9999865
No 396
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.27 E-value=8.3e-12 Score=125.05 Aligned_cols=129 Identities=22% Similarity=0.329 Sum_probs=83.1
Q ss_pred EEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEE--ECCEeCCCCCHHHHhcce--EEEccCCCcccccHHHHHhc
Q 007122 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR--IDGQDICEVTLESLRKSI--GVVPQDTVLFNDTIFHNIRY 555 (617)
Q Consensus 480 l~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~--idG~~i~~~~~~~lr~~i--~~V~Qd~~LF~gTIreNI~~ 555 (617)
+.|.+||+++|+|++|+|||||++.+.+..+...+++. +-...-+..+..++.+.+ .+|-.+ ++.+-...+..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~---~~~~~~~~~~~ 87 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIAST---FDEPPERHVQV 87 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEec---CCCCHHHHHHH
Confidence 57899999999999999999999999998877644433 222222224555555554 000000 00011111110
Q ss_pred CCCCCCHHHHHHHHHHH---c-----HHHHHHhCCCCccccccCCCCCCChHH--------HHHHHHHHHHhCCCCCC
Q 007122 556 GRLSATEEEVYDAARRA---A-----IHDTIMNFPAKYSTVVGERGLKLSGGE--------KQRVALARAFLKAPPIL 617 (617)
Q Consensus 556 g~~~~~de~i~~a~~~a---~-----l~~~I~~lp~GldT~vge~G~~LSGGQ--------rQRlaiARAll~~p~IL 617 (617)
. ..+.+.++.. | +-|.+.++|+++++.+++.|.++|||| +||+++||+++++++|.
T Consensus 88 ~------~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt 159 (249)
T cd01128 88 A------EMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLT 159 (249)
T ss_pred H------HHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceE
Confidence 0 0111111111 1 224578999999999999999999999 99999999999999873
No 397
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.26 E-value=3.7e-12 Score=147.53 Aligned_cols=140 Identities=26% Similarity=0.463 Sum_probs=110.6
Q ss_pred ccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC---CCCeEEECCEeCCCCCHHHHhcceEEEccCCCcc-ccc
Q 007122 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT---HSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF-NDT 548 (617)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p---~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF-~gT 548 (617)
++|+|++.-++||+.+.+.||.|||||||+|.|+|-.+- ..|+|.+||++.+++.. ++.++|++|+..-| .-|
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEeccccccccceeE
Confidence 699999999999999999999999999999999997754 35699999999999887 77899999866655 779
Q ss_pred HHHHHhcCC----C-----CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCC-CCChHHHHHHHHHHHHhCCCCCC
Q 007122 549 IFHNIRYGR----L-----SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGL-KLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 549 IreNI~~g~----~-----~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~-~LSGGQrQRlaiARAll~~p~IL 617 (617)
+||-|.|.. | +.+.+|-.++..+.-+ -|-.|....||.||.+.. ..|||||.|+++|-+++.+++++
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~l--kilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~ 282 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLL--KILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASIL 282 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHH--HHhCchhhccceecccccccccCcccceeeeeeeeecCccee
Confidence 999997742 1 2333332221122112 244667789999997664 59999999999999999998864
No 398
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.25 E-value=1.2e-11 Score=126.99 Aligned_cols=123 Identities=25% Similarity=0.508 Sum_probs=89.9
Q ss_pred ccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcC--------CCCCCCeEEECCEeCCCCCHHHHhcceEEEcc--CC
Q 007122 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--------FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQ--DT 542 (617)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl--------~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Q--d~ 542 (617)
.+|+|+||+|+||+.++|||+|||||||++++++|. |.|++|.|.+--..+. +.+|- ||
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~-----------a~iPge~Ep 465 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS-----------ALIPGEYEP 465 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchh-----------hccCccccc
Confidence 379999999999999999999999999999999986 5899999987543222 34443 44
Q ss_pred CcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 543 VLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 543 ~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
.+=.-||.|-+. ...-+-..-.+.+..+++.|.+.- - ..=..||-|||-|..||+++...|.++
T Consensus 466 ~f~~~tilehl~--s~tGD~~~AveILnraGlsDAvly-----R----r~f~ELStGQKeR~KLAkllaerpn~~ 529 (593)
T COG2401 466 EFGEVTILEHLR--SKTGDLNAAVEILNRAGLSDAVLY-----R----RKFSELSTGQKERAKLAKLLAERPNVL 529 (593)
T ss_pred ccCchhHHHHHh--hccCchhHHHHHHHhhccchhhhh-----h----ccHhhcCcchHHHHHHHHHHhcCCCcE
Confidence 444557888763 111111223467788888775542 1 223569999999999999999998753
No 399
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.20 E-value=2e-11 Score=118.77 Aligned_cols=118 Identities=19% Similarity=0.160 Sum_probs=70.5
Q ss_pred eeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCC-HHHHhcceEEEccCCCcccccHHHHHh
Q 007122 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT-LESLRKSIGVVPQDTVLFNDTIFHNIR 554 (617)
Q Consensus 476 ~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~-~~~lr~~i~~V~Qd~~LF~gTIreNI~ 554 (617)
+++++++.+| ..+|+|+||||||||+..|.-.+..... ....|..+.++- ...-...|.+++|+.-++. |
T Consensus 13 ~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~-- 83 (198)
T cd03276 13 RHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N-- 83 (198)
T ss_pred eeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C--
Confidence 5667777776 7799999999999999998743322211 001122111110 0112456788888766555 2
Q ss_pred cCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH----hCCCCCC
Q 007122 555 YGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF----LKAPPIL 617 (617)
Q Consensus 555 ~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAl----l~~p~IL 617 (617)
+ ..+.+ ++.+.++++. .+- ..+...+||||||||++||||+ +.+|+++
T Consensus 84 ---~-~~~~~------~~~~~~~l~~-~~~----~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~il 135 (198)
T cd03276 84 ---P-LCVLS------QDMARSFLTS-NKA----AVRDVKTLSGGERSFSTVCLLLSLWEVMESPFR 135 (198)
T ss_pred ---c-CCHHH------HHHHHHHhcc-ccc----cCCcccccChhHHHHHHHHHHHHHhcccCCCEE
Confidence 1 22211 1233344443 222 3345568999999999999999 6899875
No 400
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.15 E-value=1.2e-10 Score=135.58 Aligned_cols=40 Identities=30% Similarity=0.501 Sum_probs=36.5
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILR 503 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~ 503 (617)
.|+++|++. ..|+|+||+|++|+.++|+|+||||||||++
T Consensus 612 ~l~l~~~~~------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~ 651 (924)
T TIGR00630 612 FLTLKGARE------NNLKNITVSIPLGLFTCITGVSGSGKSTLIN 651 (924)
T ss_pred eEEEEeCcc------CCcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence 589999863 3599999999999999999999999999998
No 401
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.11 E-value=4.7e-11 Score=127.12 Aligned_cols=67 Identities=19% Similarity=0.225 Sum_probs=57.7
Q ss_pred ccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCC-eEEECCEeCCCCCHHHHhcceEEEccCC
Q 007122 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG-SIRIDGQDICEVTLESLRKSIGVVPQDT 542 (617)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G-~I~idG~~i~~~~~~~lr~~i~~V~Qd~ 542 (617)
++|+++|++|++||.++|+||||||||||++ .|+.+|++| +|.+||.++.+.+..++..-= +|.|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHhh
Confidence 6899999999999999999999999999999 788888888 799999999987765543321 888864
No 402
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=99.01 E-value=1e-09 Score=115.16 Aligned_cols=83 Identities=22% Similarity=0.283 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhcccccccCCCCCCCCCCCCcceEEEeEEEeecCCcccce-----------eeeEEEeCCcEEEEECC
Q 007122 425 QSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILD-----------GVSFVVPAGKSVAIVGT 493 (617)
Q Consensus 425 ~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~nvsF~Y~~~~~vL~-----------~isl~I~~G~~vaIVG~ 493 (617)
++..+.+|++++++.++.... .+. ...+.|+|+||+|.||+++++|+ |+++.|.+|++++||||
T Consensus 102 R~~~~~ER~~~Ll~v~~vn~~----~~e-~~~~ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~ 176 (415)
T TIGR00767 102 RSPKEGERYFALLKVESVNGD----DPE-KAKNRVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAP 176 (415)
T ss_pred eccccHhHHHHHhCCCccCCC----Ccc-ccCCCeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECC
Confidence 344577899999987654211 111 12358999999999998778997 99999999999999999
Q ss_pred CcchHHHHHHHHhcCCCCC
Q 007122 494 SGSGKSTILRLLFRSFDTH 512 (617)
Q Consensus 494 SGsGKSTL~~LL~gl~~p~ 512 (617)
+|||||||+++|.+.+...
T Consensus 177 ~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 177 PKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCChhHHHHHHHHhhccc
Confidence 9999999999999988644
No 403
>PRK11098 microcin B17 transporter; Reviewed
Probab=99.00 E-value=1.1e-05 Score=86.12 Aligned_cols=96 Identities=14% Similarity=0.201 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 341 EAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVY 420 (617)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~ 420 (617)
..++|++..+++.+...+. ...+............+.+++.+.....|++|.|.+......+.++...++.+.+.+
T Consensus 301 L~~~F~~V~~N~~rl~~~~----~~l~~f~~~y~~~~~i~P~iv~aP~y~aG~ItlG~l~Q~~~AF~~V~~als~~v~sy 376 (409)
T PRK11098 301 VRELFSNVRKNYFRLYFHY----MYFNIARILYLQVDNVFGLFLLFPSIVAGTITLGLMTQITNVFGQVRGSFQYLINSW 376 (409)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555444444333222 223333333333333444455667788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 007122 421 RETVQSLVDMKSMFQLLEEK 440 (617)
Q Consensus 421 ~~~~~~~~~~~ri~~~l~~~ 440 (617)
.++.+-.+..+|+.++.+.-
T Consensus 377 ~~lael~A~~~RL~~F~~~l 396 (409)
T PRK11098 377 TTIVELLSIYKRLRSFEAAL 396 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999886653
No 404
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.99 E-value=5e-10 Score=105.42 Aligned_cols=148 Identities=26% Similarity=0.388 Sum_probs=106.4
Q ss_pred EEEeEEEeec--CC-cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC----CCCCeEEECCEeCCCCCHHHHh
Q 007122 460 QFDNVHFSYL--TE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD----THSGSIRIDGQDICEVTLESLR 532 (617)
Q Consensus 460 ~~~nvsF~Y~--~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~----p~~G~I~idG~~i~~~~~~~lr 532 (617)
.++|++..+. .+ ..+++++|++.+.||.-++||+||||||-++|.++|..+ .+.-..++|++|+-+++++..|
T Consensus 5 DIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RR 84 (330)
T COG4170 5 DIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERR 84 (330)
T ss_pred cccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhh
Confidence 4455554443 33 378999999999999999999999999999999999864 3556778999999999999887
Q ss_pred c----ceEEEccCCCccc---cc----HHHHHhcCCC--------CCCHHHHHHHHHHHcHHH--HHHhCCCCccccccC
Q 007122 533 K----SIGVVPQDTVLFN---DT----IFHNIRYGRL--------SATEEEVYDAARRAAIHD--TIMNFPAKYSTVVGE 591 (617)
Q Consensus 533 ~----~i~~V~Qd~~LF~---gT----IreNI~~g~~--------~~~de~i~~a~~~a~l~~--~I~~lp~GldT~vge 591 (617)
+ .|++++|||.--- .+ +-+||-.+.- .....+-.+.+.++|+.| +|++ .|
T Consensus 85 k~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~---SY------ 155 (330)
T COG4170 85 KLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR---SY------ 155 (330)
T ss_pred hhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH---hC------
Confidence 6 4679999997432 22 4456633210 122344556677777754 3332 12
Q ss_pred CCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 592 RGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 592 ~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
-..|--||=|++.||-|+..+|++|
T Consensus 156 -P~ElTeGE~QKVMIA~A~AnqPrLL 180 (330)
T COG4170 156 -PYELTEGECQKVMIAIALANQPRLL 180 (330)
T ss_pred -cchhccCcceeeeeehhhccCCceE
Confidence 2335568889999999999999875
No 405
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.96 E-value=7.2e-10 Score=105.92 Aligned_cols=34 Identities=35% Similarity=0.394 Sum_probs=29.7
Q ss_pred HHhCCCCccccccCCCCCCChHHHHHHHHHHHHh----CCCCCC
Q 007122 578 IMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL----KAPPIL 617 (617)
Q Consensus 578 I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll----~~p~IL 617 (617)
+..+|+|..|++ ||||||||++||||+. .+|+++
T Consensus 83 ~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~ll 120 (178)
T cd03239 83 YFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFY 120 (178)
T ss_pred eEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 667899999998 9999999999999985 688764
No 406
>PRK12369 putative transporter; Reviewed
Probab=98.92 E-value=2.9e-05 Score=81.13 Aligned_cols=64 Identities=11% Similarity=0.204 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007122 376 AALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEE 439 (617)
Q Consensus 376 ~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 439 (617)
....+..++.+.....|+++.|.+......+.++...++.+...+.++.+-.+.++|+.++.+.
T Consensus 258 ~~~i~p~li~aP~y~sg~i~lG~l~Q~~~AF~~v~~als~~v~~y~~la~~~A~~~RL~~f~~~ 321 (326)
T PRK12369 258 MMVIVPYLIMAPGLFAGVITLGVLMQISNAFSQVRSSFSVFIRNWTTITELRSIYKRLKEFEKN 321 (326)
T ss_pred HHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444556677789999999999999999999999999999999999999999999987653
No 407
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.86 E-value=1.3e-09 Score=106.77 Aligned_cols=78 Identities=28% Similarity=0.443 Sum_probs=65.0
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCCC------------CCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHH
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSFD------------THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIF 550 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~~------------p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIr 550 (617)
++|+.++|+||||||||||++.|++.++ |..|+ ++|.|+..++.+++++. +.|+.+++.+|+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEM---IENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHH---HHcCCcEEEEEEC
Confidence 5899999999999999999999999986 88899 69999999999988875 4578889999998
Q ss_pred HHHhcCCCCCCHHHHHHHH
Q 007122 551 HNIRYGRLSATEEEVYDAA 569 (617)
Q Consensus 551 eNI~~g~~~~~de~i~~a~ 569 (617)
+|. ||. +.+++.+++
T Consensus 78 ~~~-y~~---~~~~i~~~l 92 (205)
T PRK00300 78 GNY-YGT---PRSPVEEAL 92 (205)
T ss_pred Ccc-ccC---cHHHHHHHH
Confidence 884 653 345555554
No 408
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.84 E-value=2.9e-09 Score=111.01 Aligned_cols=140 Identities=23% Similarity=0.280 Sum_probs=86.2
Q ss_pred eEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEE-----------ECCEeCCCCCHHHH
Q 007122 463 NVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR-----------IDGQDICEVTLESL 531 (617)
Q Consensus 463 nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~-----------idG~~i~~~~~~~l 531 (617)
++.-+|..+.-.|..+- +.++|+.++|+|++|-||||-+|+|+|...|.=|+-. +-|..+.++=.+-.
T Consensus 79 e~vHRYg~NgFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~ 157 (591)
T COG1245 79 EVVHRYGVNGFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLY 157 (591)
T ss_pred cceeeccCCceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHH
Confidence 34456753322232222 3568999999999999999999999999999877621 12222222111111
Q ss_pred hc------ceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 007122 532 RK------SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605 (617)
Q Consensus 532 r~------~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRla 605 (617)
-. ++-||.-=|-.+.||++|=+.--++. ....+.+++.+|.+ .+..+-..|||||-||+|
T Consensus 158 ~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~---g~~devve~l~L~n-----------vl~r~v~~LSGGELQr~a 223 (591)
T COG1245 158 EGELRAVHKPQYVDLIPKVVKGKVGELLKKVDER---GKFDEVVERLGLEN-----------VLDRDVSELSGGELQRVA 223 (591)
T ss_pred cCCcceecchHHHHHHHHHhcchHHHHHHhhhhc---CcHHHHHHHhcchh-----------hhhhhhhhcCchHHHHHH
Confidence 11 23344445667788888766532211 12223344444443 344456789999999999
Q ss_pred HHHHHhCCCCCC
Q 007122 606 LARAFLKAPPIL 617 (617)
Q Consensus 606 iARAll~~p~IL 617 (617)
||-|++|+++++
T Consensus 224 Iaa~l~rdADvY 235 (591)
T COG1245 224 IAAALLRDADVY 235 (591)
T ss_pred HHHHHhccCCEE
Confidence 999999999863
No 409
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.82 E-value=3.1e-09 Score=103.73 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=32.8
Q ss_pred ceeeeEEEeCCc-EEEEECCCcchHHHHHHHHh--------cCCCCC
Q 007122 475 LDGVSFVVPAGK-SVAIVGTSGSGKSTILRLLF--------RSFDTH 512 (617)
Q Consensus 475 L~~isl~I~~G~-~vaIVG~SGsGKSTL~~LL~--------gl~~p~ 512 (617)
+-++|+++.+|+ .++|+||+|||||||++.+. |++-|.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~ 63 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPA 63 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccc
Confidence 457899999996 69999999999999999998 666554
No 410
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=98.82 E-value=5.5e-05 Score=77.83 Aligned_cols=223 Identities=17% Similarity=0.136 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 132 GFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFSKVALRTI 211 (617)
Q Consensus 132 ~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~~~~~~~~~~ 211 (617)
++.++...+++....+.+.+.|.+..... . .+...+....+..+ ....+.....++...+..+..
T Consensus 34 ~l~l~~~~lsv~~~~~~g~~~~aL~~~d~--~------~f~~~l~~~~~l~~-------~~~~l~~~~~yl~~~L~l~wR 98 (281)
T PF06472_consen 34 LLLLARVYLSVRINFWNGDFYNALQQKDL--Q------AFWRLLLLFLLLAI-------ASALLNSILKYLRQRLALRWR 98 (281)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhcCH--H------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 33344556666677777888887754211 1 11111110011111 112333344455555666666
Q ss_pred HHHHHHHHHHHHcCCcccccc-cCchHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 007122 212 RSVSRKVFSHLHELDLRYHLS-RETGAL---NRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWITS 287 (617)
Q Consensus 212 ~~l~~~~~~~ll~~~~~~f~~-~~~g~l---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~~i~~ 287 (617)
..|.+.+.++.++-. .||.- ...+++ -+|+++|.+........+...++..+++++....++.-..++...|.++
T Consensus 99 ~~Lt~~~~~~yl~~~-~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~ 177 (281)
T PF06472_consen 99 EWLTRHLHDRYLSNR-TYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWSISGWLGPWAAL 177 (281)
T ss_pred HHHHHHHHHHHcCCc-hhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 667777777777666 55543 223334 3444444433333333444455555555554444443333332222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 288 LSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLN 367 (617)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (617)
+..++...+...+.+...+...+.++.+++....+....++.|.|-.++.|+.+.++.++..++..+...+........+
T Consensus 178 ~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~~~~~~~~~~ 257 (281)
T PF06472_consen 178 IYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNWRRLIRRRLRLG 257 (281)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444455555555556666677777788888999999999999999999998888777766655555444444
Q ss_pred HHH
Q 007122 368 FGQ 370 (617)
Q Consensus 368 ~~~ 370 (617)
...
T Consensus 258 ~~~ 260 (281)
T PF06472_consen 258 FFT 260 (281)
T ss_pred HHH
Confidence 443
No 411
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.82 E-value=8.1e-09 Score=110.65 Aligned_cols=97 Identities=26% Similarity=0.345 Sum_probs=78.8
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEEC---CEeCCCCCHHHH--
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID---GQDICEVTLESL-- 531 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~id---G~~i~~~~~~~l-- 531 (617)
+.++.++++..|..+..+++.++ +|.+||+++|+|+||||||||++.|+|+.+|+.|.|.+. |.++.++..+.+
T Consensus 138 ~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~ 216 (450)
T PRK06002 138 PAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLAD 216 (450)
T ss_pred CCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHH
Confidence 46899999999987778998886 999999999999999999999999999999999999885 566665544433
Q ss_pred --hcceEEEccCCC---------cccccHHHHHh
Q 007122 532 --RKSIGVVPQDTV---------LFNDTIFHNIR 554 (617)
Q Consensus 532 --r~~i~~V~Qd~~---------LF~gTIreNI~ 554 (617)
++.|++|+|... ....||.|...
T Consensus 217 ~r~rtI~vV~qsd~~~~~r~~~~~~a~~iAEyfr 250 (450)
T PRK06002 217 NLKKAVAVVATSDESPMMRRLAPLTATAIAEYFR 250 (450)
T ss_pred hhCCeEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 357999999653 22346777764
No 412
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.82 E-value=1e-08 Score=106.12 Aligned_cols=129 Identities=25% Similarity=0.441 Sum_probs=95.5
Q ss_pred EeecCCcccceeeeEEEeCCc-----EEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEcc
Q 007122 466 FSYLTERKILDGVSFVVPAGK-----SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQ 540 (617)
Q Consensus 466 F~Y~~~~~vL~~isl~I~~G~-----~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Q 540 (617)
++||..+.-+-++.|.|+.|+ .+...|++|.||||++++++|..+|++|. ++..+ .++|=||
T Consensus 343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~l-------nVSykpq 409 (592)
T KOG0063|consen 343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVL-------NVSYKPQ 409 (592)
T ss_pred eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccccc-------ceecccc
Confidence 678877778899999999985 57889999999999999999999998762 12222 4788888
Q ss_pred CCC-cccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCC
Q 007122 541 DTV-LFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPI 616 (617)
Q Consensus 541 d~~-LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~I 616 (617)
... =|.+|+|+=+ .+.++++-..-.+..++++ |-..+..+++.-.+||||+.||+|||-+|=+.+++
T Consensus 410 kispK~~~tvR~ll--------~~kIr~ay~~pqF~~dvmk-pL~ie~i~dqevq~lSggelQRval~KOGGKpAdv 477 (592)
T KOG0063|consen 410 KISPKREGTVRQLL--------HTKIRDAYMHPQFVNDVMK-PLQIENIIDQEVQGLSGGELQRVALALCLGKPADV 477 (592)
T ss_pred ccCccccchHHHHH--------HHHhHhhhcCHHHHHhhhh-hhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCce
Confidence 543 5788888754 2334444444444444444 44555566777889999999999999998777765
No 413
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.76 E-value=2.6e-08 Score=101.87 Aligned_cols=140 Identities=16% Similarity=0.213 Sum_probs=81.8
Q ss_pred eeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC-----------------------------------------CCC
Q 007122 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----------------------------------------HSG 514 (617)
Q Consensus 476 ~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p-----------------------------------------~~G 514 (617)
++.++++.+| ..+|+|+|||||||++..|.-+... ...
T Consensus 13 ~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~~ 91 (270)
T cd03242 13 AELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGGR 91 (270)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCce
Confidence 4556777676 6889999999999998776432210 111
Q ss_pred eEEECCEeCCC-CCHHHHhcceEEEccCCCcccccHHHHHhcCCC---CCC--HHHHHHHHHHH--cHHHHHHhCCCCcc
Q 007122 515 SIRIDGQDICE-VTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL---SAT--EEEVYDAARRA--AIHDTIMNFPAKYS 586 (617)
Q Consensus 515 ~I~idG~~i~~-~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~---~~~--de~i~~a~~~a--~l~~~I~~lp~Gld 586 (617)
.+.+||..++. -+...+-..|.+.|++..|+.++-.+-..+-+. ... -.+.++..+++ ...+ +.+-|+..|
T Consensus 92 ~~~ing~~~~~l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~~~~-~~~g~~~d~ 170 (270)
T cd03242 92 KARLNGIKVRRLSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQRNA-LLKGPHRDD 170 (270)
T ss_pred EEEECCeeccCHHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HhCCCChhh
Confidence 35577776654 122233445777788888886544443333221 111 11222222222 1112 222477666
Q ss_pred ccccCCCCC----CChHHHHHHHHHHHHh---------CCCCCC
Q 007122 587 TVVGERGLK----LSGGEKQRVALARAFL---------KAPPIL 617 (617)
Q Consensus 587 T~vge~G~~----LSGGQrQRlaiARAll---------~~p~IL 617 (617)
..+.-++.. +|+||||+++|||+|. .+|+++
T Consensus 171 l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~il 214 (270)
T cd03242 171 LLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVL 214 (270)
T ss_pred eEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEE
Confidence 666554544 8999999999999974 788764
No 414
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.74 E-value=2.5e-10 Score=129.98 Aligned_cols=163 Identities=12% Similarity=0.126 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHccHHHHHhccchHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007122 316 NDASTRAIDSLINYETVKYFNNEAFEAEQY-----DEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGIL 390 (617)
Q Consensus 316 ~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 390 (617)
....+.+.|.+.++.+||..+.|......| .....+..+...+..........+...+......+++++|++.++
T Consensus 40 ~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~~~~~il~ig~~~v~ 119 (644)
T PRK10733 40 EVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFISWFPMLLLIGVWIFF 119 (644)
T ss_pred HHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888999999999988766666 444444444433332222222222222333444556667888899
Q ss_pred cCCcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCcceEEEeEEEe
Q 007122 391 SGEMTVG---DLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFS 467 (617)
Q Consensus 391 ~g~lt~G---~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~nvsF~ 467 (617)
.|.++.| .+++|..+...+..| ..+...+..+.......+|+.++.+...+..
T Consensus 120 ~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~----------------------- 175 (644)
T PRK10733 120 MRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEYLREPS----------------------- 175 (644)
T ss_pred HhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHHhhCHH-----------------------
Confidence 9999998 788887777777766 5555566666666666677766654321100
Q ss_pred ecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC
Q 007122 468 YLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (617)
Q Consensus 468 Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~ 510 (617)
..+++...+++| +.|+||+|+||||+++.+++...
T Consensus 176 ------~~~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 176 ------RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred ------HHHhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence 001122256667 99999999999999999998654
No 415
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.69 E-value=1.9e-08 Score=99.01 Aligned_cols=127 Identities=19% Similarity=0.212 Sum_probs=68.4
Q ss_pred eeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCC---ccccc----
Q 007122 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTV---LFNDT---- 548 (617)
Q Consensus 476 ~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~---LF~gT---- 548 (617)
+++.++..+| ..+|+|++|||||||+..|.-..-..... .. +.-..+++.++ + .++.. -|+..
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~---~~---r~~~~~~~i~~-g--~~~~~v~~~~~~~~~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKL---LG---RAKKVGEFVKR-G--CDEGTIEIELYGNPGNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccc---cc---cccCHHHHhhC-C--CCcEEEEEEEEeCCCcc
Confidence 3445555444 66899999999999999876443211110 00 00011111110 0 01100 11111
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH----hCCCCCC
Q 007122 549 IFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF----LKAPPIL 617 (617)
Q Consensus 549 IreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAl----l~~p~IL 617 (617)
-.+|+.+. .+.+.+.+++..... |.+..+|.+.+.. ..+...||||||||+++|+++ +.+|+++
T Consensus 85 ~~~n~~~~---~~q~~~~~~~~~~~~-e~l~~~~~~~~~~-~~~~~~LS~G~~q~~~i~~~la~~~~~~p~ll 152 (213)
T cd03277 85 QVDNLCQF---LPQDRVGEFAKLSPI-ELLVKFREGEQLQ-ELDPHHQSGGERSVSTMLYLLSLQELTRCPFR 152 (213)
T ss_pred ccCCceEE---EchHHHHHHHhCChH-hHheeeecCCCcc-ccchhhccccHHHHHHHHHHHHHHhccCCCEE
Confidence 23444422 244555556555444 5566777766532 456778999999998877554 5788864
No 416
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.68 E-value=1.9e-08 Score=102.11 Aligned_cols=67 Identities=22% Similarity=0.338 Sum_probs=57.1
Q ss_pred cEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCC-HHHHhcceEEEccCCCcccccHHHH
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT-LESLRKSIGVVPQDTVLFNDTIFHN 552 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~-~~~lr~~i~~V~Qd~~LF~gTIreN 552 (617)
+.++|+|++|||||||++.|+|++.|.+|+|.++|.++..++ ..++...++++||...--..++.||
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~ 179 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDG 179 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccccccccccccc
Confidence 689999999999999999999999999999999999998775 5688888999999764333345554
No 417
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.67 E-value=4e-08 Score=100.85 Aligned_cols=31 Identities=26% Similarity=0.500 Sum_probs=25.8
Q ss_pred ceeeeEEEeCCcEEEEECCCcchHHHHHHHHh
Q 007122 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (617)
Q Consensus 475 L~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~ 506 (617)
++++.++..+| ..+|+|++||||||++.+|.
T Consensus 12 ~~~~~i~~~~~-~~~i~G~nGsGKS~il~ai~ 42 (276)
T cd03241 12 IEELELDFEEG-LTVLTGETGAGKSILLDALS 42 (276)
T ss_pred eeeeEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 35667777666 89999999999999998875
No 418
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.64 E-value=2.9e-08 Score=98.29 Aligned_cols=95 Identities=22% Similarity=0.196 Sum_probs=67.9
Q ss_pred CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceE-EEccCCCcccccH
Q 007122 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG-VVPQDTVLFNDTI 549 (617)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~-~V~Qd~~LF~gTI 549 (617)
.+.+.+|+++++++|+.+.|+|||||||||+++.+.- -.+..++| +||.+...+. +
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~ 72 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--I 72 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--c
Confidence 4578999999999999999999999999999999981 24455676 7887753222 1
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH--hCCCCCC
Q 007122 550 FHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF--LKAPPIL 617 (617)
Q Consensus 550 reNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAl--l~~p~IL 617 (617)
.|.| ++..++.+. . ..++|.|++|+..+|+++ +.+|+++
T Consensus 73 ~~~i---------------l~~~~l~d~-----------~---~~~lS~~~~e~~~~a~il~~~~~~sLv 113 (222)
T cd03285 73 VDCI---------------LARVGASDS-----------Q---LKGVSTFMAEMLETAAILKSATENSLI 113 (222)
T ss_pred ccee---------------Eeeeccccc-----------h---hcCcChHHHHHHHHHHHHHhCCCCeEE
Confidence 1111 111122111 1 356999999999999999 8888764
No 419
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.62 E-value=5.7e-08 Score=93.66 Aligned_cols=79 Identities=22% Similarity=0.207 Sum_probs=58.8
Q ss_pred cceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCC--cc-cccHH
Q 007122 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTV--LF-NDTIF 550 (617)
Q Consensus 474 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~--LF-~gTIr 550 (617)
..+-+.+.+++|+.++|+|++||||||+++.|+++++|+.|.|.+.+.+-..++ .+..+.++.|+.. .+ .-|..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecCCCCCCCccCHH
Confidence 444556789999999999999999999999999999999999999775433321 2345666665543 22 35778
Q ss_pred HHHhc
Q 007122 551 HNIRY 555 (617)
Q Consensus 551 eNI~~ 555 (617)
+++..
T Consensus 91 ~~l~~ 95 (186)
T cd01130 91 DLLRS 95 (186)
T ss_pred HHHHH
Confidence 87743
No 420
>PRK01889 GTPase RsgA; Reviewed
Probab=98.62 E-value=2e-08 Score=106.43 Aligned_cols=81 Identities=23% Similarity=0.383 Sum_probs=67.8
Q ss_pred ceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHh
Q 007122 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIR 554 (617)
Q Consensus 475 L~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~ 554 (617)
++.+.-.+++|++++|+|+||+|||||++.|+|...|..|+|.+++..-.. ...++++.+++|+.++|+.+-..|+.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~~ 261 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMRELQ 261 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhhc
Confidence 555566688999999999999999999999999999999999998754322 23456899999999999988888888
Q ss_pred cCCC
Q 007122 555 YGRL 558 (617)
Q Consensus 555 ~g~~ 558 (617)
+.++
T Consensus 262 l~~~ 265 (356)
T PRK01889 262 LWDA 265 (356)
T ss_pred ccCc
Confidence 7753
No 421
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.59 E-value=4.1e-08 Score=120.82 Aligned_cols=69 Identities=25% Similarity=0.282 Sum_probs=64.3
Q ss_pred cccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHH------HHHHHHHHhCCCCCC
Q 007122 544 LFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQ------RVALARAFLKAPPIL 617 (617)
Q Consensus 544 LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQ------RlaiARAll~~p~IL 617 (617)
.|+||++|||.+ +|+++++ +.+++.++.++|+..+|.| ||+++.+| .||||||| |++||||++.+|++|
T Consensus 1153 ~~~~~~~~~i~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~il 1227 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RSDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGII 1227 (1311)
T ss_pred HcCccHHHHhhc-CCCCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCEE
Confidence 689999999999 8888877 6899999999999999999 99999886 89999999 999999999999975
No 422
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.56 E-value=5e-08 Score=104.57 Aligned_cols=82 Identities=21% Similarity=0.316 Sum_probs=64.2
Q ss_pred cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCe---EEECCEeCCCCCHHHH------hcceEEEccCC
Q 007122 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGS---IRIDGQDICEVTLESL------RKSIGVVPQDT 542 (617)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~---I~idG~~i~~~~~~~l------r~~i~~V~Qd~ 542 (617)
..+++++ ++|.+|++++|+|+||+|||||+++|+|+++|+.+. |-.+|.+++++..+.+ |+.+++++||.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 4589999 999999999999999999999999999999988643 3445555555443433 55799999998
Q ss_pred Ccc-cccHHHHHh
Q 007122 543 VLF-NDTIFHNIR 554 (617)
Q Consensus 543 ~LF-~gTIreNI~ 554 (617)
..+ .-+..+|..
T Consensus 222 s~~~rl~a~e~a~ 234 (434)
T PRK07196 222 SPLMRIKATELCH 234 (434)
T ss_pred ChhhhHHHHHHHH
Confidence 766 446777764
No 423
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.54 E-value=1e-07 Score=92.75 Aligned_cols=119 Identities=17% Similarity=0.219 Sum_probs=72.0
Q ss_pred CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcc-cccH
Q 007122 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF-NDTI 549 (617)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF-~gTI 549 (617)
+++|++|++++ +|+.++|+||||||||||+|.|.+..- +..+|.++... .++.|...+| .-|+
T Consensus 13 ~~~v~n~i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~ 76 (199)
T cd03283 13 EKRVANDIDME--KKNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRV 76 (199)
T ss_pred CCeecceEEEc--CCcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccc
Confidence 34688887766 479999999999999999999987432 22356554321 2566654455 6699
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCC--CCccccccCCCCCCChHHHHHH--HHHHHHhC
Q 007122 550 FHNIRYGRLSATEEEVYDAARRAAIHDTIMNFP--AKYSTVVGERGLKLSGGEKQRV--ALARAFLK 612 (617)
Q Consensus 550 reNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp--~GldT~vge~G~~LSGGQrQRl--aiARAll~ 612 (617)
+||+.++.. ...++.. .+.+.++.+. +--=-.+.|-...++-..++.+ ++.+.+.+
T Consensus 77 ~d~l~~~~s-~~~~e~~------~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~ 136 (199)
T cd03283 77 SDDLRDGIS-YFYAELR------RLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN 136 (199)
T ss_pred hhccccccC-hHHHHHH------HHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHH
Confidence 999988753 2222221 1223333322 1112234576677777766654 34555543
No 424
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.54 E-value=3e-07 Score=102.44 Aligned_cols=29 Identities=38% Similarity=0.653 Sum_probs=28.2
Q ss_pred cceeeeEEEeCCcEEEEECCCcchHHHHH
Q 007122 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTIL 502 (617)
Q Consensus 474 vL~~isl~I~~G~~vaIVG~SGsGKSTL~ 502 (617)
=|+||+.+||-|..++|.|-||||||||+
T Consensus 616 NLkni~v~iPLg~~t~VTGVSGSGKSTLI 644 (935)
T COG0178 616 NLKNIDVEIPLGVFTCVTGVSGSGKSTLI 644 (935)
T ss_pred CcccceeecccccEEEEEecCCCCHHHhH
Confidence 49999999999999999999999999999
No 425
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.52 E-value=1.1e-07 Score=102.62 Aligned_cols=83 Identities=29% Similarity=0.439 Sum_probs=66.6
Q ss_pred CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECC---EeCCC-----CCHHHHhcceEEEcc--
Q 007122 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG---QDICE-----VTLESLRKSIGVVPQ-- 540 (617)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG---~~i~~-----~~~~~lr~~i~~V~Q-- 540 (617)
+..+++++ +++.+|++++|+|+||+|||||+++|+|+++|+.|.|.+.| .++.+ ++...+++.+.+|.+
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 45689999 99999999999999999999999999999999999999954 44443 455668889999965
Q ss_pred CCCc-------ccccHHHHHh
Q 007122 541 DTVL-------FNDTIFHNIR 554 (617)
Q Consensus 541 d~~L-------F~gTIreNI~ 554 (617)
+|.+ -..|+.|...
T Consensus 224 ~~~~~r~~~~~~a~~iAEyfr 244 (438)
T PRK07721 224 QPALMRIKGAYTATAIAEYFR 244 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 4332 2346777764
No 426
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.52 E-value=1.4e-07 Score=88.87 Aligned_cols=39 Identities=31% Similarity=0.401 Sum_probs=28.6
Q ss_pred eEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEE
Q 007122 479 SFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517 (617)
Q Consensus 479 sl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~ 517 (617)
++.+.++..+.|+||+||||||+++.+.-..-..+|.+.
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~ 53 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATR 53 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344555679999999999999999997655444544443
No 427
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.46 E-value=5.5e-07 Score=110.45 Aligned_cols=55 Identities=27% Similarity=0.306 Sum_probs=41.2
Q ss_pred ccceeeeEEEeCCcEEEEECCCcchHHHHHHHHh------cC---CCCCCCeEEECCEeCCCCC
Q 007122 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF------RS---FDTHSGSIRIDGQDICEVT 527 (617)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~------gl---~~p~~G~I~idG~~i~~~~ 527 (617)
.=|+|++++||-|..++|.|-||||||||++=.+ .+ .+.-+--|.+|-.||..-+
T Consensus 1504 nNLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~ 1567 (1809)
T PRK00635 1504 HTIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQ 1567 (1809)
T ss_pred ccCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCC
Confidence 3489999999999999999999999999997443 11 1333445777777765443
No 428
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=6.7e-07 Score=92.84 Aligned_cols=137 Identities=26% Similarity=0.377 Sum_probs=88.0
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhc--CCCCCCCeEEECCEeCCCCCHHHHhcce
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR--SFDTHSGSIRIDGQDICEVTLESLRKSI 535 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~g--l~~p~~G~I~idG~~i~~~~~~~lr~~i 535 (617)
+|.++|.+.+- .++..+-|-||+|-.|.++++|||+|-|||||++-|+- |--|..=. +
T Consensus 264 DIKiEnF~ISA-~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnID-------------------v 323 (807)
T KOG0066|consen 264 DIKIENFDISA-QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNID-------------------V 323 (807)
T ss_pred cceeeeeeeec-ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCc-------------------e
Confidence 57778766554 35678889999999999999999999999999998763 22233222 4
Q ss_pred EEEccCCCcccccHHHHHhc---------------------CCCCCCHH---HHHHHHHHHcHH-------HHHHhCCCC
Q 007122 536 GVVPQDTVLFNDTIFHNIRY---------------------GRLSATEE---EVYDAARRAAIH-------DTIMNFPAK 584 (617)
Q Consensus 536 ~~V~Qd~~LF~gTIreNI~~---------------------g~~~~~de---~i~~a~~~a~l~-------~~I~~lp~G 584 (617)
-+|.|+..-=+.|--+-+.- |+..+ .| ++.+-++..|++ ..+.. -|
T Consensus 324 LlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~ta-aErl~~v~~ELraiGA~sAEarARRILAG--LG 400 (807)
T KOG0066|consen 324 LLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTA-AERLKEVADELRAIGADSAEARARRILAG--LG 400 (807)
T ss_pred EeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHH-HHHHHHHHHHHHHhccccchhHHHHHHhh--cC
Confidence 56666655444443333321 11111 11 122222222221 12222 37
Q ss_pred ccccccCCCC-CCChHHHHHHHHHHHHhCCCCCC
Q 007122 585 YSTVVGERGL-KLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 585 ldT~vge~G~-~LSGGQrQRlaiARAll~~p~IL 617 (617)
++-++-++-. .+|||=|-|++|||||+-.|-+|
T Consensus 401 FskEMQ~rPt~kFSGGWRMRvSLARALflEPTLL 434 (807)
T KOG0066|consen 401 FSKEMQERPTTKFSGGWRMRVSLARALFLEPTLL 434 (807)
T ss_pred CChhHhcCCccccCCceeeehhHHHHHhcCceee
Confidence 8888888775 59999999999999999999764
No 429
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.42 E-value=3.9e-07 Score=96.42 Aligned_cols=87 Identities=26% Similarity=0.315 Sum_probs=64.8
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCCCC--CCC-eEEECCEeCCCCCHHHHhcceEEEccCC-----CcccccHHHHHh
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDT--HSG-SIRIDGQDICEVTLESLRKSIGVVPQDT-----VLFNDTIFHNIR 554 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~~p--~~G-~I~idG~~i~~~~~~~lr~~i~~V~Qd~-----~LF~gTIreNI~ 554 (617)
++|..++|+||+||||||+++.|++++.+ .++ .|.....|+ ++..+.++...++|+|.. .-|..++++++.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 58999999999999999999999999843 334 565555555 577777777778888864 368899999887
Q ss_pred cCCCCC-------CHHHHHHHHHH
Q 007122 555 YGRLSA-------TEEEVYDAARR 571 (617)
Q Consensus 555 ~g~~~~-------~de~i~~a~~~ 571 (617)
. +|+. +.|.+..|++.
T Consensus 211 ~-~Pd~i~vGEiRd~et~~~al~a 233 (358)
T TIGR02524 211 R-KPHAILVGEARDAETISAALEA 233 (358)
T ss_pred c-CCCEEeeeeeCCHHHHHHHHHH
Confidence 6 4542 34445566666
No 430
>PRK08149 ATP synthase SpaL; Validated
Probab=98.41 E-value=2.5e-07 Score=99.15 Aligned_cols=69 Identities=19% Similarity=0.386 Sum_probs=60.9
Q ss_pred cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCC---CeEEECCEeCCCCCHHHHh----cceEEEccC
Q 007122 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS---GSIRIDGQDICEVTLESLR----KSIGVVPQD 541 (617)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~---G~I~idG~~i~~~~~~~lr----~~i~~V~Qd 541 (617)
..+++++ +++.+||+++|+|+||+|||||++.|+++.+++. |.|-.+|.++.++..+.++ +++++|...
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 4689999 9999999999999999999999999999999988 9999999999888776665 567777653
No 431
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.38 E-value=3.9e-07 Score=87.82 Aligned_cols=56 Identities=25% Similarity=0.334 Sum_probs=48.5
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDT 542 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~ 542 (617)
.|+.++|+||||||||||+++|++...| .+.+++..+........++.+++++|+.
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 3889999999999999999999998776 5888888888776667778899999984
No 432
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.37 E-value=6.3e-07 Score=87.23 Aligned_cols=104 Identities=18% Similarity=0.271 Sum_probs=68.2
Q ss_pred EEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCC--CHHH
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSA--TEEE 564 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~--~de~ 564 (617)
+++|+|++|||||||++.+++.+.+..| +.+-..|.......++....++++|+..+. +..| |.+.. .++-
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~---g~~~~~~~~~~ 75 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERILG---VETG---GCPHTAIREDA 75 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCceeh---hhcC---CCccceeccCH
Confidence 7899999999999999999999887655 555455666656667767789999987652 1011 11111 1111
Q ss_pred HHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHH
Q 007122 565 VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGE 600 (617)
Q Consensus 565 i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQ 600 (617)
+....++.+++.++|++..+.|+..|..+|.-.
T Consensus 76 ---~~~~~~L~~l~~~~~~~D~iiIEt~G~~l~~~~ 108 (199)
T TIGR00101 76 ---SMNLEAVAEMEARFPPLEMVFIESGGDNLSATF 108 (199)
T ss_pred ---HHHHHHHHHHHhcCCCCCEEEEECCCCCccccc
Confidence 112334556667777777778888887666543
No 433
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.35 E-value=6.8e-07 Score=87.04 Aligned_cols=81 Identities=25% Similarity=0.281 Sum_probs=58.5
Q ss_pred EEEEECCCcchHHHHHHHHhcCCCCC-CCeEEECCEeCCCCCHHHHhcceEEEcc-----CCCcccccHHHHHhcCCCCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSFDTH-SGSIRIDGQDICEVTLESLRKSIGVVPQ-----DTVLFNDTIFHNIRYGRLSA 560 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~~p~-~G~I~idG~~i~~~~~~~lr~~i~~V~Q-----d~~LF~gTIreNI~~g~~~~ 560 (617)
.+.|+||+||||||+++.|++.+++. .|.|..-+.++. +... ....++.| ++..|...++.++... |+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~~---~~~~~i~q~~vg~~~~~~~~~i~~aLr~~-pd~ 77 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVHE---SKRSLINQREVGLDTLSFENALKAALRQD-PDV 77 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-cccc---CccceeeecccCCCccCHHHHHHHHhcCC-cCE
Confidence 58999999999999999999888754 678776665653 2222 23355665 5678999999999874 554
Q ss_pred -------CHHHHHHHHHHH
Q 007122 561 -------TEEEVYDAARRA 572 (617)
Q Consensus 561 -------~de~i~~a~~~a 572 (617)
++|.+..+++.+
T Consensus 78 ii~gEird~e~~~~~l~~a 96 (198)
T cd01131 78 ILVGEMRDLETIRLALTAA 96 (198)
T ss_pred EEEcCCCCHHHHHHHHHHH
Confidence 666666666655
No 434
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.34 E-value=3.1e-07 Score=87.87 Aligned_cols=77 Identities=30% Similarity=0.430 Sum_probs=54.0
Q ss_pred CcEEEEECCCcchHHHHHHHHhcCCC------------CCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHH
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFRSFD------------THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHN 552 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~gl~~------------p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreN 552 (617)
|+.++|+||||||||||++.|++.++ |..|+ .+|.+..-++.+.+.+.+ +++.++..+++.+|
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 75 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEEFEEMI---AAGEFLEWAEVHGN 75 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHHHHHHH---HcCCcEEEEEECCe
Confidence 78999999999999999999999763 44444 466666666666666543 56777777777777
Q ss_pred HhcCCCCCCHHHHHHHHH
Q 007122 553 IRYGRLSATEEEVYDAAR 570 (617)
Q Consensus 553 I~~g~~~~~de~i~~a~~ 570 (617)
. || .+.+.+.++++
T Consensus 76 ~-y~---~~~~~i~~~~~ 89 (180)
T TIGR03263 76 Y-YG---TPKSPVEEALA 89 (180)
T ss_pred e-eC---CcHHHHHHHHH
Confidence 3 55 33444554443
No 435
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.31 E-value=5.8e-07 Score=85.73 Aligned_cols=66 Identities=33% Similarity=0.403 Sum_probs=46.8
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhc-ceEEEccCCC-cccccHHHHHhc
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK-SIGVVPQDTV-LFNDTIFHNIRY 555 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~-~i~~V~Qd~~-LF~gTIreNI~~ 555 (617)
+|+.++|+|+|||||||+++.|+++..| +.+||.++.. ...+|+ ..++.+|+.. +...+..+|+.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~--~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHP--AKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCC--HhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999999876 6899988743 233333 3456666532 233455555544
No 436
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.29 E-value=6.6e-07 Score=88.21 Aligned_cols=39 Identities=31% Similarity=0.524 Sum_probs=33.2
Q ss_pred EEEEECCCcchHHHHH-HHHhcCCCC-----------------CCCeEEECCEeCCC
Q 007122 487 SVAIVGTSGSGKSTIL-RLLFRSFDT-----------------HSGSIRIDGQDICE 525 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~-~LL~gl~~p-----------------~~G~I~idG~~i~~ 525 (617)
+++++|++|||||||+ +++.|.+++ ..|.+.+++.|+..
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g 67 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAG 67 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCC
Confidence 7999999999999999 689998765 56888888888753
No 437
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.28 E-value=7.2e-07 Score=96.00 Aligned_cols=101 Identities=21% Similarity=0.355 Sum_probs=72.2
Q ss_pred ccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC-CCCeEEE---CCEeCCCCCHHHHh---cceEEE-----cc
Q 007122 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIRI---DGQDICEVTLESLR---KSIGVV-----PQ 540 (617)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p-~~G~I~i---dG~~i~~~~~~~lr---~~i~~V-----~Q 540 (617)
.+++++ ++|.+|++++|+|+||+|||||++.|+|+.++ ..|.|.+ +|.++.++..+.++ .+.++| +|
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q 231 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQ 231 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCC
Confidence 378887 99999999999999999999999999998844 4466666 55777666666554 235555 99
Q ss_pred CCC------cccccHHHHHhcCCCCC-----CHHHHHHHHHHHcH
Q 007122 541 DTV------LFNDTIFHNIRYGRLSA-----TEEEVYDAARRAAI 574 (617)
Q Consensus 541 d~~------LF~gTIreNI~~g~~~~-----~de~i~~a~~~a~l 574 (617)
+|. ....+|.|.+.....+. +..+..+|++.+++
T Consensus 232 ~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L 276 (442)
T PRK06315 232 SSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGL 276 (442)
T ss_pred CHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCc
Confidence 774 34557888885432221 23456667777766
No 438
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.25 E-value=3.2e-07 Score=83.81 Aligned_cols=72 Identities=32% Similarity=0.523 Sum_probs=56.0
Q ss_pred EEEECCCcchHHHHHHHHhcCCCC-------------CCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHh
Q 007122 488 VAIVGTSGSGKSTILRLLFRSFDT-------------HSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIR 554 (617)
Q Consensus 488 vaIVG~SGsGKSTL~~LL~gl~~p-------------~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~ 554 (617)
++|+||||||||||++.|++.+++ ..|+ .+|++..-++.+++.+ .+.|+.++..++..+| .
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~~~~---~~~~~~f~e~~~~~~~-~ 75 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEEFER---LIENGEFLEWAEFHGN-Y 75 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHHHHH---HHHcCCeEEEEEEcCE-E
Confidence 789999999999999999998753 4455 5888888888888876 4568888998899888 4
Q ss_pred cCCCCCCHHHHHHH
Q 007122 555 YGRLSATEEEVYDA 568 (617)
Q Consensus 555 ~g~~~~~de~i~~a 568 (617)
||.+ .+++.++
T Consensus 76 yg~~---~~~i~~~ 86 (137)
T cd00071 76 YGTS---KAAVEEA 86 (137)
T ss_pred ecCc---HHHHHHH
Confidence 6643 4444443
No 439
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.25 E-value=1.6e-06 Score=82.88 Aligned_cols=63 Identities=21% Similarity=0.316 Sum_probs=50.1
Q ss_pred CcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEE-----------CCEeCCCCCHHHHh-----cceEEEccCCCccccc
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI-----------DGQDICEVTLESLR-----KSIGVVPQDTVLFNDT 548 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~i-----------dG~~i~~~~~~~lr-----~~i~~V~Qd~~LF~gT 548 (617)
|+.++|+|+|||||||+++.|++.+.+. |.+.+ +|.++...+.+++. +.++.+.|...++.|+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 79 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGI 79 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccC
Confidence 6789999999999999999999987654 65554 77777777766653 3589999998777664
No 440
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=98.24 E-value=0.0058 Score=59.80 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007122 122 EFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTT 157 (617)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~ 157 (617)
++++++.+...+.+...++.+..|++.+..||.+..
T Consensus 7 ~~~~kl~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~ 42 (237)
T PF13748_consen 7 RHRKKLALTFLLVLAENVLLLLYPLFIGFAINALLN 42 (237)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 557888999999899999999999999999999864
No 441
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.21 E-value=1.1e-06 Score=85.71 Aligned_cols=38 Identities=24% Similarity=0.228 Sum_probs=35.4
Q ss_pred CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcC
Q 007122 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
++.+.+|+++++++|+.++|+|||||||||+++.+.++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999999999999999876
No 442
>PRK15494 era GTPase Era; Provisional
Probab=98.21 E-value=8.1e-07 Score=93.76 Aligned_cols=54 Identities=26% Similarity=0.268 Sum_probs=49.9
Q ss_pred CcceEEEeEEEeecCCcccceeeeEEEeCCc-------EEEEECCCcchHHHHHHHHhcCC
Q 007122 456 GGSIQFDNVHFSYLTERKILDGVSFVVPAGK-------SVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 456 ~~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~-------~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
.+.+++++++|+|++..++++++++++++|+ +++|||++|+|||||++.|.|-.
T Consensus 16 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 16 KGDTEALAAAVREDASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred CCccccccccccCCCCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3689999999999977789999999999999 99999999999999999998753
No 443
>PLN02796 D-glycerate 3-kinase
Probab=98.20 E-value=5.2e-07 Score=93.60 Aligned_cols=63 Identities=21% Similarity=0.248 Sum_probs=53.5
Q ss_pred CcccceeeeEEE---eCCcE-----EEEECCCcchHHHHHHHHhcCCCCC---CCeEEECCEeCCCCCHHHHhc
Q 007122 471 ERKILDGVSFVV---PAGKS-----VAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQDICEVTLESLRK 533 (617)
Q Consensus 471 ~~~vL~~isl~I---~~G~~-----vaIVG~SGsGKSTL~~LL~gl~~p~---~G~I~idG~~i~~~~~~~lr~ 533 (617)
...+++++++++ ++|+. +||+|++|||||||++.|.+++++. .|.|.+||..+.......+++
T Consensus 78 ~~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 78 YLWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 346888999888 67887 9999999999999999999999875 688999999887766666665
No 444
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.14 E-value=1.1e-06 Score=86.14 Aligned_cols=29 Identities=38% Similarity=0.686 Sum_probs=27.1
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCCCC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDT 511 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~~p 511 (617)
++|+.++|+|+||||||||++.|.+++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 67999999999999999999999998864
No 445
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.13 E-value=1.9e-06 Score=83.95 Aligned_cols=56 Identities=27% Similarity=0.394 Sum_probs=44.4
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCCCC-CCCeEEECCEeCCCCCHHHHhcceEEEccCC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIRIDGQDICEVTLESLRKSIGVVPQDT 542 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~~p-~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~ 542 (617)
++|+.++|+|.||||||||+++|.+.+.+ ..|.+.+||.++++ .+...++|.+|+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~----~~~~~~~~~~~~~ 78 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH----GLCSDLGFSDADR 78 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh----hhhhcCCcCcccH
Confidence 57999999999999999999999986644 45689999977652 2333577888775
No 446
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.10 E-value=2e-06 Score=89.67 Aligned_cols=74 Identities=23% Similarity=0.308 Sum_probs=54.6
Q ss_pred eeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccC--CCcccccHHHHHh
Q 007122 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQD--TVLFNDTIFHNIR 554 (617)
Q Consensus 478 isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd--~~LF~gTIreNI~ 554 (617)
+++.+++|+.++|+|++||||||+++.|+++++|..|.+.++ |..++.... ++.+.++.|. ..--..|..+.+.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~-~~~~~l~~~~~~~~~~~~~~~~~l~ 212 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH-PNYVHLFYSKGGQGLAKVTPKDLLQ 212 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC-CCEEEEEecCCCCCcCccCHHHHHH
Confidence 457788999999999999999999999999999999999986 455555443 4455555432 2222346666653
No 447
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.09 E-value=3e-06 Score=91.03 Aligned_cols=58 Identities=33% Similarity=0.448 Sum_probs=51.5
Q ss_pred ecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCC
Q 007122 468 YLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526 (617)
Q Consensus 468 Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~ 526 (617)
|..+..+++++ +++.+|++++|+|++|+|||||+++|++..+++.|.|.+.|...+++
T Consensus 121 ~~tGi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~~ev 178 (413)
T TIGR03497 121 LETGIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGREV 178 (413)
T ss_pred ccccceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccchHHH
Confidence 44455789999 99999999999999999999999999999999999999888766553
No 448
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.09 E-value=5.3e-06 Score=81.48 Aligned_cols=68 Identities=24% Similarity=0.408 Sum_probs=47.2
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccc---cH--HHHHhcCC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND---TI--FHNIRYGR 557 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~g---TI--reNI~~g~ 557 (617)
+++..|+|+|+||||||||++.|.+.+. ...+.+++||.+.++. +. +.++.++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~---------------------~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~ 62 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG---------------------DESIAVIPQDSYYKDQSHLSFEERVKTNYDH 62 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---------------------CCceEEEeCCccccCcccCCHHHhcccCccC
Confidence 4788999999999999999999999872 1257888999887754 23 33444555
Q ss_pred CCC-CHHHHHHHHHH
Q 007122 558 LSA-TEEEVYDAARR 571 (617)
Q Consensus 558 ~~~-~de~i~~a~~~ 571 (617)
|+. +.+.+.+.++.
T Consensus 63 ~~~~~~~~l~~~l~~ 77 (209)
T PRK05480 63 PDAFDHDLLIEHLKA 77 (209)
T ss_pred cccccHHHHHHHHHH
Confidence 543 33444444433
No 449
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.07 E-value=4.7e-06 Score=86.58 Aligned_cols=57 Identities=30% Similarity=0.430 Sum_probs=49.1
Q ss_pred ecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCC
Q 007122 468 YLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE 525 (617)
Q Consensus 468 Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~ 525 (617)
|..+..+++++ +++.+|++++|+|++|+|||||++.|+|+.+|+.|.+..-|.+-++
T Consensus 53 l~tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~~e 109 (326)
T cd01136 53 LPTGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERGRE 109 (326)
T ss_pred cCCCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCCcc
Confidence 44456789999 9999999999999999999999999999999999888776644443
No 450
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.03 E-value=3.4e-06 Score=90.67 Aligned_cols=68 Identities=26% Similarity=0.362 Sum_probs=59.3
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCC
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~ 526 (617)
.++.++++-.+..+..+++++ ++|.+|++++|+|++|+|||||++.|+|+.+++.|.+.+.|..-+++
T Consensus 129 ~~~r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeRgrEv 196 (433)
T PRK07594 129 AMVRQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV 196 (433)
T ss_pred ceeccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCCchHH
Confidence 577788877777677899999 99999999999999999999999999999999999888877654443
No 451
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.01 E-value=5.2e-06 Score=81.10 Aligned_cols=36 Identities=28% Similarity=0.352 Sum_probs=28.5
Q ss_pred eEEEeCCcEEEEECCCcchHHHHHHHHh-cCCCCCCC
Q 007122 479 SFVVPAGKSVAIVGTSGSGKSTILRLLF-RSFDTHSG 514 (617)
Q Consensus 479 sl~I~~G~~vaIVG~SGsGKSTL~~LL~-gl~~p~~G 514 (617)
++++.+|++++|+||+||||||+++.+. +.+.+..|
T Consensus 23 ~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g 59 (202)
T cd03243 23 DINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIG 59 (202)
T ss_pred eEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcC
Confidence 4556689999999999999999999999 33333444
No 452
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.99 E-value=9.4e-06 Score=87.24 Aligned_cols=68 Identities=24% Similarity=0.373 Sum_probs=57.2
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCC
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~ 526 (617)
.++-++++-.|..+..+++++ +++.+|++++|+|++|+|||||++.|+|..+|+.|.|.+.|..-++.
T Consensus 130 ~~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~ev 197 (432)
T PRK06793 130 AFEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREV 197 (432)
T ss_pred chheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcccH
Confidence 456666766666556788875 99999999999999999999999999999999999998887765544
No 453
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.98 E-value=8.2e-06 Score=94.60 Aligned_cols=51 Identities=24% Similarity=0.329 Sum_probs=39.5
Q ss_pred ceEEEeEEEeecCCcccce-----eeeEEEeCC-cEEEEECCCcchHHHHHHHHhcC-CCCCCC
Q 007122 458 SIQFDNVHFSYLTERKILD-----GVSFVVPAG-KSVAIVGTSGSGKSTILRLLFRS-FDTHSG 514 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~-----~isl~I~~G-~~vaIVG~SGsGKSTL~~LL~gl-~~p~~G 514 (617)
.|.++++.. |+++ .+|+++.++ +.++|+||||+||||++|.+.+. +.+..|
T Consensus 295 ~i~l~~~rh------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G 352 (771)
T TIGR01069 295 KIILENARH------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG 352 (771)
T ss_pred CEEEccccC------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC
Confidence 577777653 3333 368888877 99999999999999999999987 455555
No 454
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.97 E-value=6.4e-06 Score=90.48 Aligned_cols=65 Identities=12% Similarity=0.224 Sum_probs=57.2
Q ss_pred EEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCC
Q 007122 461 FDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526 (617)
Q Consensus 461 ~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~ 526 (617)
++|++..|+ .+.+++++++.+..|+.+.++|++|||||||++.|.|+.+|.+|++.+++..+.++
T Consensus 187 ~~d~~~v~G-q~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~ 251 (506)
T PRK09862 187 QHDLSDVIG-QEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSL 251 (506)
T ss_pred ccCeEEEEC-cHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhh
Confidence 457777774 45689999999999999999999999999999999999999999999998777543
No 455
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.95 E-value=1.5e-05 Score=78.76 Aligned_cols=73 Identities=25% Similarity=0.205 Sum_probs=50.7
Q ss_pred CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC-CCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccH
Q 007122 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTI 549 (617)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p-~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTI 549 (617)
.+.+.+|+++++++ +.++|+|||||||||+++.+.+..-. ..|. .++ ..+.+++++.|- ...-+.
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~---------~vp--~~~~~i~~~~~i--~~~~~~ 82 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGS---------FVP--ASKAEIGVVDRI--FTRIGA 82 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCC---------eec--cccceecceeeE--eccCCc
Confidence 34588999999887 99999999999999999999764311 2221 111 123467777652 234578
Q ss_pred HHHHhcCC
Q 007122 550 FHNIRYGR 557 (617)
Q Consensus 550 reNI~~g~ 557 (617)
.||+..|.
T Consensus 83 ~~~ls~g~ 90 (216)
T cd03284 83 SDDLAGGR 90 (216)
T ss_pred hhhhccCc
Confidence 99998774
No 456
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.95 E-value=7.5e-06 Score=88.45 Aligned_cols=56 Identities=29% Similarity=0.457 Sum_probs=49.6
Q ss_pred CCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCC
Q 007122 470 TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526 (617)
Q Consensus 470 ~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~ 526 (617)
.+..+++++ +++.+|++++|+|++|+|||||++.|+|+.+|+.|.+...|.+-+++
T Consensus 131 tG~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev 186 (422)
T TIGR02546 131 TGVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREV 186 (422)
T ss_pred CCceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCH
Confidence 345689999 99999999999999999999999999999999999998866655554
No 457
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.93 E-value=2.8e-06 Score=92.49 Aligned_cols=61 Identities=18% Similarity=0.273 Sum_probs=49.4
Q ss_pred eeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcC
Q 007122 477 GVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYG 556 (617)
Q Consensus 477 ~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g 556 (617)
+.+..+++|+.+++|||+|+||||++..|++.+.+..|.. ++++|++|+ |.-+..||+.++
T Consensus 248 ~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~-----------------kV~LI~~Dt--~RigA~EQLr~~ 308 (484)
T PRK06995 248 SEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS-----------------KVALLTTDS--YRIGGHEQLRIY 308 (484)
T ss_pred CccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC-----------------eEEEEeCCc--cchhHHHHHHHH
Confidence 3344566799999999999999999999999887777642 578999998 667789998653
No 458
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.91 E-value=1.2e-05 Score=80.17 Aligned_cols=55 Identities=24% Similarity=0.393 Sum_probs=40.5
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCCCCCCCe----EEECCEeCCCCCHHHHhcceEEEccC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGS----IRIDGQDICEVTLESLRKSIGVVPQD 541 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~----I~idG~~i~~~~~~~lr~~i~~V~Qd 541 (617)
++...++|.|+||||||||++.|.++..+.+|. |.+|+.. . ....+...+++++.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~---~-~~~~~~~~g~~~~~ 89 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH---L-DNAVLDAHGLRPRK 89 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc---C-CHHHHHhccccccc
Confidence 346799999999999999999999999999998 4445421 1 22334445666654
No 459
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.90 E-value=8.9e-06 Score=84.80 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=55.9
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCC------CHHHHhcceEEEccCCCccc-ccHHHHHh
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV------TLESLRKSIGVVPQDTVLFN-DTIFHNIR 554 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~------~~~~lr~~i~~V~Qd~~LF~-gTIreNI~ 554 (617)
++|+.+++|||+||||||++.-|++.+.+..|+|.+.+.|.... ....-+..+.+++|+..... .++.+++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~ 190 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQ 190 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999999999999999999989999988887432 22334667899998654443 34567654
No 460
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.90 E-value=1.4e-05 Score=61.69 Aligned_cols=36 Identities=31% Similarity=0.440 Sum_probs=27.9
Q ss_pred eeeEEEeC-CcEEEEECCCcchHHHHHHHHhcCCCCC
Q 007122 477 GVSFVVPA-GKSVAIVGTSGSGKSTILRLLFRSFDTH 512 (617)
Q Consensus 477 ~isl~I~~-G~~vaIVG~SGsGKSTL~~LL~gl~~p~ 512 (617)
+-.+++.+ |+.+.|+|+||||||||+.++.=+.-|.
T Consensus 14 ~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 14 GETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred CeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 34566765 6799999999999999998887544443
No 461
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.90 E-value=3.4e-05 Score=76.28 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=44.2
Q ss_pred CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhc-CCCCCCCeEEEC
Q 007122 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR-SFDTHSGSIRID 519 (617)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~g-l~~p~~G~I~id 519 (617)
++.+.+|+++++++|++++|+||+|+||||+++.+++ .+.++.|.....
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a 66 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA 66 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc
Confidence 3578999999999999999999999999999999999 778899987654
No 462
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=97.88 E-value=0.042 Score=56.16 Aligned_cols=94 Identities=14% Similarity=0.143 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 340 FEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSV 419 (617)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~ 419 (617)
...+.|.+..+++.+...+.... +...............++.+..+..|.+|.|.+......+.++..+++.+...
T Consensus 218 tl~eLF~~Vr~Ny~rly~hy~yf----ni~~~~y~q~~~i~~~i~l~Psi~ag~iTLG~~~Qi~~aF~~V~~sfq~lv~~ 293 (315)
T PF05992_consen 218 TLRELFSNVRRNYFRLYFHYMYF----NIARISYLQFDVIFPYIILIPSIVAGAITLGVLQQISNAFGQVRSSFQYLVNS 293 (315)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666555555544443332 22222222333333444455667789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 007122 420 YRETVQSLVDMKSMFQLL 437 (617)
Q Consensus 420 ~~~~~~~~~~~~ri~~~l 437 (617)
++++.+-....+|+.++-
T Consensus 294 W~tivEL~Si~kRL~~FE 311 (315)
T PF05992_consen 294 WTTIVELRSIYKRLRAFE 311 (315)
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 999999999999998763
No 463
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.86 E-value=1.2e-05 Score=88.30 Aligned_cols=61 Identities=23% Similarity=0.285 Sum_probs=49.9
Q ss_pred cEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccc-cHHHHHh
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNIR 554 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~g-TIreNI~ 554 (617)
-.|+|.|+||||||||++.|+++. |..|.|.+||... ....+.+.+|+|.+|+. ++.+||.
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~~-------~~~~i~~nfD~P~a~D~d~L~enL~ 127 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYND-------SSRIIDGNFDDPRLTDYDTLLDNIH 127 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEcceec-------chhhhCccCCChhhcchhHHHHHHH
Confidence 589999999999999999999987 6789999999742 11246788899988864 7888873
No 464
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.85 E-value=1.3e-05 Score=81.90 Aligned_cols=55 Identities=29% Similarity=0.399 Sum_probs=42.0
Q ss_pred EEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTV 543 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~ 543 (617)
.++|+|+|||||||+++.|+++..+..|.+...+ ++..++... |+..++.+|+|.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~D-d~~~~~~~~-r~~~g~~~~~p~ 55 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLD-DYHSLDRKG-RKETGITALDPR 55 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECc-ccccCCHHH-HHHhhccccccc
Confidence 3799999999999999999999998877654433 565555554 456777777763
No 465
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.85 E-value=8e-05 Score=66.68 Aligned_cols=45 Identities=47% Similarity=0.719 Sum_probs=35.7
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcCCCCCC-CeEEECCEeCCCCCH
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHS-GSIRIDGQDICEVTL 528 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~-G~I~idG~~i~~~~~ 528 (617)
++..+.|+||+|+||||+++.|++...... +.+.++.........
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 46 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVL 46 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCH
Confidence 478899999999999999999999887665 677777665544433
No 466
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.84 E-value=9.5e-06 Score=94.09 Aligned_cols=64 Identities=28% Similarity=0.373 Sum_probs=57.9
Q ss_pred cEEEEECCCcchHHHHHHHHhcCC----------------------------------------------------CCCC
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRSF----------------------------------------------------DTHS 513 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl~----------------------------------------------------~p~~ 513 (617)
..|||.||+||||||++++|++.+ +|.+
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGIDLDAELVDEQVVTEAVGEFFTGLHFDISVDPDS 81 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHHHHHHhcCCCcchhhhhhhhhHHHHHHHHhCCcEEEecCCCC
Confidence 479999999999999999999885 2778
Q ss_pred CeEEECCEeCC-CCCHHHHhcceEEEccCCCcccccHHHHHh
Q 007122 514 GSIRIDGQDIC-EVTLESLRKSIGVVPQDTVLFNDTIFHNIR 554 (617)
Q Consensus 514 G~I~idG~~i~-~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~ 554 (617)
|.|++||.|+. .+..++++++++.|.|.|. ||+|+.
T Consensus 82 ~~i~~~~~~v~~~i~~~~v~~~~s~ia~~~~-----vr~~l~ 118 (712)
T PRK09518 82 PGVFADGEDISEEIRSPEVSSHVSAVAAIPP-----VRNVLI 118 (712)
T ss_pred cEEEECCeEchHhhCcHHHHHHHHHHhCCHH-----HHHHHH
Confidence 89999999998 8999999999999999998 888873
No 467
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.83 E-value=1.6e-05 Score=85.41 Aligned_cols=68 Identities=22% Similarity=0.320 Sum_probs=54.6
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCC
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT 527 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~ 527 (617)
.+-+.++-.|..+..+++.+ ++|.+|++++|+|++|+|||||++.|+++.+|+.+.+...|..-+++.
T Consensus 112 ~~R~~~~~~~~tGi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGer~~ev~ 179 (411)
T TIGR03496 112 LKRAPIDEPLDVGVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGERGREVK 179 (411)
T ss_pred HhccCcceEeeeeEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEecChHHHH
Confidence 34444555555556789888 999999999999999999999999999999999888777766544433
No 468
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.83 E-value=1.2e-05 Score=87.22 Aligned_cols=57 Identities=32% Similarity=0.482 Sum_probs=49.2
Q ss_pred CCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCC
Q 007122 470 TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT 527 (617)
Q Consensus 470 ~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~ 527 (617)
.+..+++++ ++|.+|++++|+|+||+|||||++.|+|+.+|+.|.+...|..-+++.
T Consensus 149 TGi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~ 205 (440)
T TIGR01026 149 TGVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVR 205 (440)
T ss_pred ceeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHH
Confidence 345789999 999999999999999999999999999999999988877666555443
No 469
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=97.82 E-value=9.5e-06 Score=87.21 Aligned_cols=68 Identities=22% Similarity=0.369 Sum_probs=52.3
Q ss_pred cceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCC---CeEEECCEeCCCCCHHHH---hcceEEEccCC
Q 007122 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS---GSIRIDGQDICEVTLESL---RKSIGVVPQDT 542 (617)
Q Consensus 474 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~---G~I~idG~~i~~~~~~~l---r~~i~~V~Qd~ 542 (617)
+++.+ ++|.+|++++|+|++|+|||||++.|+|+.+|+. |.|-.+|.++.++-.+.+ ..+.++|.|++
T Consensus 165 aID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ 238 (455)
T PRK07960 165 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAP 238 (455)
T ss_pred eeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEEC
Confidence 45444 9999999999999999999999999999999986 899999998865321111 12456666643
No 470
>PRK07261 topology modulation protein; Provisional
Probab=97.82 E-value=1.2e-05 Score=76.26 Aligned_cols=65 Identities=22% Similarity=0.326 Sum_probs=44.6
Q ss_pred cEEEEECCCcchHHHHHHHHhcCCCC---CCCeEEECCEeCCCCCHHHHhcc-eEEEccCCCcccccHHH
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRSFDT---HSGSIRIDGQDICEVTLESLRKS-IGVVPQDTVLFNDTIFH 551 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl~~p---~~G~I~idG~~i~~~~~~~lr~~-i~~V~Qd~~LF~gTIre 551 (617)
++|+|+|+||||||||++.|++.+.. ..+.+.+.. +..+.+.+++.+. -.++.|+.++++|+-..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~wIidg~~~~ 69 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP-NWQERDDDDMIADISNFLLKHDWIIDGNYSW 69 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc-ccccCCHHHHHHHHHHHHhCCCEEEcCcchh
Confidence 47999999999999999999977643 223333321 1234455444443 45788999999999654
No 471
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.80 E-value=1.4e-05 Score=85.81 Aligned_cols=56 Identities=30% Similarity=0.408 Sum_probs=49.2
Q ss_pred CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCC
Q 007122 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT 527 (617)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~ 527 (617)
+..+++ .++++.+|++++|+|+||+|||||++.|+++.+|+.|.|.+.|..-+++.
T Consensus 127 Gi~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~~ev~ 182 (418)
T TIGR03498 127 GVRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERGREVR 182 (418)
T ss_pred ccEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeechHHH
Confidence 334664 69999999999999999999999999999999999999999888766554
No 472
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.77 E-value=2.1e-05 Score=84.89 Aligned_cols=55 Identities=27% Similarity=0.464 Sum_probs=49.0
Q ss_pred CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCC
Q 007122 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526 (617)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~ 526 (617)
+..+++++ +++.+|++++|+|++|+|||||++.++|+.+++.|.|.+.|..-+++
T Consensus 150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer~~ev 204 (441)
T PRK09099 150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERGREV 204 (441)
T ss_pred Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccChHHH
Confidence 34689999 99999999999999999999999999999999999998888654443
No 473
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.77 E-value=1.8e-05 Score=85.07 Aligned_cols=60 Identities=22% Similarity=0.371 Sum_probs=51.9
Q ss_pred eecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCC
Q 007122 467 SYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT 527 (617)
Q Consensus 467 ~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~ 527 (617)
.+..+..+++++ +++.+|++++|+|+||+|||||++.|++..+++.+.|...|..-++..
T Consensus 140 ~l~tgi~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergrev~ 199 (434)
T PRK08472 140 VFSVGVKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIP 199 (434)
T ss_pred eccchhHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccchhHH
Confidence 333344589999 999999999999999999999999999999999999998888777654
No 474
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=97.70 E-value=1.8e-05 Score=85.40 Aligned_cols=40 Identities=23% Similarity=0.495 Sum_probs=37.3
Q ss_pred cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCC
Q 007122 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH 512 (617)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~ 512 (617)
..+++++ ++|.+|++++|+|++|+|||||+++|+|+.+|+
T Consensus 156 i~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~d 195 (451)
T PRK05688 156 IRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAD 195 (451)
T ss_pred eeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4589999 999999999999999999999999999998876
No 475
>PRK00023 cmk cytidylate kinase; Provisional
Probab=97.69 E-value=3.1e-05 Score=76.94 Aligned_cols=70 Identities=26% Similarity=0.372 Sum_probs=54.9
Q ss_pred CcEEEEECCCcchHHHHHHHHh---cCCCCCCCeE--------EECCEeCCCC-CHHHHhcceEEEc------cCCCccc
Q 007122 485 GKSVAIVGTSGSGKSTILRLLF---RSFDTHSGSI--------RIDGQDICEV-TLESLRKSIGVVP------QDTVLFN 546 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~---gl~~p~~G~I--------~idG~~i~~~-~~~~lr~~i~~V~------Qd~~LF~ 546 (617)
.-.|+|+|++||||||+.++|+ |+-.++.|.+ .-+|.|..+. ...++.+++.+.+ |+.++++
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAVALAALRHGVDLEDEEALVALAAHLDISFESDPGGQRVFLNG 83 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHHHHHHHHcCCCCCCHHHHHHHHhcCCeEEecCCCcceEEECC
Confidence 3579999999999999999998 4447888986 4578888776 3556666777776 6778888
Q ss_pred ccHHHHHh
Q 007122 547 DTIFHNIR 554 (617)
Q Consensus 547 gTIreNI~ 554 (617)
..+.+||.
T Consensus 84 ~~i~~~lr 91 (225)
T PRK00023 84 EDVTDEIR 91 (225)
T ss_pred cchHHhhC
Confidence 88888764
No 476
>PRK05922 type III secretion system ATPase; Validated
Probab=97.68 E-value=7.2e-05 Score=80.49 Aligned_cols=55 Identities=24% Similarity=0.382 Sum_probs=46.7
Q ss_pred CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCC
Q 007122 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526 (617)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~ 526 (617)
+-.+++.+ ++|.+|++++|+|++|+|||||++.|+|..+++.|.+...|..-++.
T Consensus 144 GIr~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGerg~ev 198 (434)
T PRK05922 144 GIKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGERGREV 198 (434)
T ss_pred Cceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCCCCchH
Confidence 33567775 99999999999999999999999999999999999987766554443
No 477
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.68 E-value=4.4e-05 Score=78.32 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=34.9
Q ss_pred EEEEECCCcchHHHHHHHHhcCCC--CCCCeEEECCEeCCCCCHHHH
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSFD--THSGSIRIDGQDICEVTLESL 531 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~~--p~~G~I~idG~~i~~~~~~~l 531 (617)
.|||.|+|||||||+++.|.++.. |.+|+|.+-+.|--..+.+.+
T Consensus 64 IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l 110 (290)
T TIGR00554 64 IISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVL 110 (290)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHH
Confidence 799999999999999999999987 778887765554444444433
No 478
>PRK00098 GTPase RsgA; Reviewed
Probab=97.65 E-value=7.4e-05 Score=77.51 Aligned_cols=35 Identities=40% Similarity=0.607 Sum_probs=33.4
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEE
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI 518 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~i 518 (617)
+|+.++++|+||+|||||++.|+|...+..|+|..
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~ 197 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISE 197 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceec
Confidence 59999999999999999999999999999999976
No 479
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.62 E-value=4.1e-05 Score=78.94 Aligned_cols=67 Identities=27% Similarity=0.389 Sum_probs=46.2
Q ss_pred eeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEE---CCEeCCCCCHHHHhc-ceEEEccCCCc
Q 007122 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI---DGQDICEVTLESLRK-SIGVVPQDTVL 544 (617)
Q Consensus 476 ~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~i---dG~~i~~~~~~~lr~-~i~~V~Qd~~L 544 (617)
+.+...++ +++++++|+||+|||||++.|+|...+..|+|.. .|.....- ...++- ..+++.+.|-+
T Consensus 153 ~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~-~~~~~~~~~~~liDtPG~ 223 (287)
T cd01854 153 DELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTH-RELFPLPGGGLLIDTPGF 223 (287)
T ss_pred HHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccce-EEEEEcCCCCEEEECCCC
Confidence 34444454 5899999999999999999999999999999875 23222111 111221 25678887766
No 480
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.62 E-value=9.2e-05 Score=72.89 Aligned_cols=117 Identities=17% Similarity=0.168 Sum_probs=66.9
Q ss_pred ccceeeeEEEeCCcEEEEECCCcchHHHHHHHHh--cCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCccc--cc
Q 007122 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF--RSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN--DT 548 (617)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~--gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~--gT 548 (617)
.|-+|++++=..+.+++|+||+|+||||++|.+. ... +..|...... ...++|..|...-++ +|
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~s 84 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRES 84 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccC
Confidence 4556666542223799999999999999999998 333 5677765532 235788888765443 46
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCCh--HHHHHHHHHHHHhC
Q 007122 549 IFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSG--GEKQRVALARAFLK 612 (617)
Q Consensus 549 IreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSG--GQrQRlaiARAll~ 612 (617)
+.+++..+ ..|+.+..... ....+.---.+.|=+..+.- |+..-.++.+.+.+
T Consensus 85 i~~~~S~f-----~~el~~l~~~l------~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~ 139 (213)
T cd03281 85 VSSGQSAF-----MIDLYQVSKAL------RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLK 139 (213)
T ss_pred hhhccchH-----HHHHHHHHHHH------HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh
Confidence 66665321 23333333221 11122222345566666653 54444456666654
No 481
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=97.60 E-value=2.4e-05 Score=77.39 Aligned_cols=32 Identities=34% Similarity=0.410 Sum_probs=24.5
Q ss_pred eeeEEEeCCcEEEEECCCcchHHHHHHHH-hcCC
Q 007122 477 GVSFVVPAGKSVAIVGTSGSGKSTILRLL-FRSF 509 (617)
Q Consensus 477 ~isl~I~~G~~vaIVG~SGsGKSTL~~LL-~gl~ 509 (617)
...+.+. +..++|+||+||||||++..| .-|.
T Consensus 17 ~~~~~~~-~~~~~i~G~NGsGKS~ileAi~~~l~ 49 (220)
T PF02463_consen 17 NAELSFS-PGLNVIVGPNGSGKSNILEAIEFVLG 49 (220)
T ss_dssp EEEEETT-SSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred eEEEecC-CCCEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4444554 459999999999999999998 3444
No 482
>PRK06820 type III secretion system ATPase; Validated
Probab=97.59 E-value=5.3e-05 Score=81.71 Aligned_cols=51 Identities=25% Similarity=0.454 Sum_probs=43.2
Q ss_pred CCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCE
Q 007122 470 TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ 521 (617)
Q Consensus 470 ~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~ 521 (617)
.+..+++++ +++.+||+++|+|++|+|||||++.+++..+|+.+.+-.-|.
T Consensus 149 TGi~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~V~~~iGe 199 (440)
T PRK06820 149 TGIRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVMVLALIGE 199 (440)
T ss_pred CCCceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCCCCEEEEEEEcc
Confidence 345689999 999999999999999999999999999999888754433343
No 483
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=97.58 E-value=4.1e-05 Score=79.91 Aligned_cols=119 Identities=23% Similarity=0.271 Sum_probs=72.2
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCC------------C----HHHHhc--ceEEEccCCCc
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV------------T----LESLRK--SIGVVPQDTVL 544 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~------------~----~~~lr~--~i~~V~Qd~~L 544 (617)
+||+..++||.+|-||||-+|.|+|-.+|.-|.- -++-+..++ - .+.++. +.-||.|=|-.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~-~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRY-DNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCC-CCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 5899999999999999999999999999987752 111111111 1 111111 12344444445
Q ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCC
Q 007122 545 FNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPI 616 (617)
Q Consensus 545 F~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~I 616 (617)
-.+++.+++.--++. +...++++.-+|....+ .+-..||||+-||.+||-+.+.++++
T Consensus 177 ~k~~v~~~l~~~~~r---~~~~~~~~~~~L~~~~~-----------re~~~lsggelqrfaia~~~vq~adv 234 (592)
T KOG0063|consen 177 VKGTVGSLLDRKDER---DNKEEVCDQLDLNNLLD-----------REVEQLSGGELQRFAIAMVCVQKADV 234 (592)
T ss_pred HHHHHHHHHHHHhhc---ccHHHHHHHHHHhhHHH-----------hhhhhcccchhhhhhhhhhhhhhcce
Confidence 556666665422111 12233343333333222 23457999999999999999998876
No 484
>PTZ00035 Rad51 protein; Provisional
Probab=97.56 E-value=9e-05 Score=78.01 Aligned_cols=83 Identities=19% Similarity=0.270 Sum_probs=59.4
Q ss_pred EEeCCcEEEEECCCcchHHHHHHHHhcCCC-C-----CCCeE-EECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHH
Q 007122 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFD-T-----HSGSI-RIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNI 553 (617)
Q Consensus 481 ~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~-p-----~~G~I-~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI 553 (617)
=|++|+.+.|+|++|||||||+..++.... | .+|.+ +||+.+. ++++. +..+.|.+-+...++.+||
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~--f~~er----i~~ia~~~g~~~~~~l~nI 187 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGT--FRPER----IVQIAERFGLDPEDVLDNI 187 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCC--CCHHH----HHHHHHHhCCChHhHhhce
Confidence 589999999999999999999998886554 3 56666 7887543 44443 3334566666777899999
Q ss_pred hcCCCCCCHHHHHHHHH
Q 007122 554 RYGRLSATEEEVYDAAR 570 (617)
Q Consensus 554 ~~g~~~~~de~i~~a~~ 570 (617)
.+.++ .+.++..+.+.
T Consensus 188 ~~~~~-~~~e~~~~~l~ 203 (337)
T PTZ00035 188 AYARA-YNHEHQMQLLS 203 (337)
T ss_pred EEEcc-CCHHHHHHHHH
Confidence 88864 44455545443
No 485
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.56 E-value=0.0001 Score=71.65 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=30.9
Q ss_pred EEEEECCCcchHHHHHHHHhcCCCCCCCeEEECC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG 520 (617)
+++|+|++|+|||||++.|+|...+.+|.+..+.
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~ 36 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEEGAAPTGV 36 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCccccCc
Confidence 5899999999999999999999888888887764
No 486
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.53 E-value=0.0001 Score=69.47 Aligned_cols=40 Identities=28% Similarity=0.502 Sum_probs=35.1
Q ss_pred CcEEEEECCCcchHHHHHHHHhcC----CCCCCC----eEEECCEeCC
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFRS----FDTHSG----SIRIDGQDIC 524 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~gl----~~p~~G----~I~idG~~i~ 524 (617)
.-+++|+|++|||||||++.+.|. +.|+.| .+.++|.++.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~ 61 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLN 61 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEE
Confidence 457999999999999999999997 779999 8888887763
No 487
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.52 E-value=9e-05 Score=91.73 Aligned_cols=79 Identities=23% Similarity=0.350 Sum_probs=53.7
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHH----hcCCCCC-CCeEEECCEeCCCCCHHHHh
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLL----FRSFDTH-SGSIRIDGQDICEVTLESLR 532 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL----~gl~~p~-~G~I~idG~~i~~~~~~~lr 532 (617)
.+.++|+- +|.+++.=-.-|.|. + ..++||||||||||||+.+| .|..+|. .|.+++.|.++..- ...+
T Consensus 5 kl~i~g~r-Sf~~~~~~~~~I~F~--~-~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~~~~--~~~~ 78 (1311)
T TIGR00606 5 KMSILGVR-SFGIEDKDKQIIDFF--S-PLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKVAQE--TDVR 78 (1311)
T ss_pred eeeeecee-cCCCccccceeeecc--c-ceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCcCcc--Hhhh
Confidence 57777761 444211101123443 3 49999999999999999998 5999995 79988877655432 4566
Q ss_pred cceEEEccCC
Q 007122 533 KSIGVVPQDT 542 (617)
Q Consensus 533 ~~i~~V~Qd~ 542 (617)
..|.+++++.
T Consensus 79 a~V~l~F~~~ 88 (1311)
T TIGR00606 79 AQIRLQFRDV 88 (1311)
T ss_pred heeEEEEEcC
Confidence 7788887654
No 488
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.52 E-value=0.00036 Score=73.41 Aligned_cols=116 Identities=20% Similarity=0.324 Sum_probs=68.5
Q ss_pred EEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE-ccCCC-cccccHHHHH----h
Q 007122 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV-PQDTV-LFNDTIFHNI----R 554 (617)
Q Consensus 481 ~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V-~Qd~~-LF~gTIreNI----~ 554 (617)
-++++..+.|+|++||||||+++.|++..++.++-|.+.+. .++.... ..++.+. +++.. .=.-|..+.+ +
T Consensus 158 ~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~--~El~l~~-~~~v~l~~~~~~~~~~~~t~~~ll~~~LR 234 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDT--LELVIPH-ENHVRLLYSKNGAGLGAVTAEHLLQASLR 234 (344)
T ss_pred HHHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCC--ccccCCC-CCEEEEEeeccccCcCccCHHHHHHHHhc
Confidence 36789999999999999999999999999999998887654 2333221 2233322 22111 1012333333 2
Q ss_pred cCCCC------CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 007122 555 YGRLS------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (617)
Q Consensus 555 ~g~~~------~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiAR 608 (617)
+ +|+ ..++|.+++++.+ ....+.++-|. .+.+.+.+..+...+++
T Consensus 235 ~-~pD~IivGEiR~~ea~~~l~a~-----~tGh~G~ltTi---Ha~s~~~a~~Rl~~l~~ 285 (344)
T PRK13851 235 M-RPDRILLGEMRDDAAWAYLSEV-----VSGHPGSISTI---HGANPVQGFKKLFSLVK 285 (344)
T ss_pred C-CCCeEEEEeeCcHHHHHHHHHH-----HhCCCcEEECC---CCCCHHHHHHHHHHHHh
Confidence 2 233 3455556665544 22334445443 45666777777766665
No 489
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.52 E-value=6.7e-05 Score=72.12 Aligned_cols=50 Identities=20% Similarity=0.385 Sum_probs=40.4
Q ss_pred cceeeeEEEeCCcEEEEECCCcchHHHHHHHHhc--------CCCCCCCeEEECCEeCC
Q 007122 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR--------SFDTHSGSIRIDGQDIC 524 (617)
Q Consensus 474 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~g--------l~~p~~G~I~idG~~i~ 524 (617)
+|++++++.++++ ++|+|++|||||||++.+.+ -..|..+++.+++.++.
T Consensus 9 ~~~~~~~~~~~~k-i~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~ 66 (190)
T cd00879 9 VLSSLGLYNKEAK-ILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFK 66 (190)
T ss_pred HHHHhhcccCCCE-EEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEE
Confidence 6888898876655 59999999999999999987 44566788888886653
No 490
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.50 E-value=7e-05 Score=79.32 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=38.8
Q ss_pred EEEEECCCcchHHHHHHHHhcCCCCC---CCeEEECCEeCCCCCHHHHhcc
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQDICEVTLESLRKS 534 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~~p~---~G~I~idG~~i~~~~~~~lr~~ 534 (617)
.|||.|++|||||||++.|.++.++. .|.|.+||..+..-....+++.
T Consensus 214 IIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt~eer~kL~~~ 264 (460)
T PLN03046 214 VIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAELRER 264 (460)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCChHHHHHHHhh
Confidence 68999999999999999999998776 7889999988654444444443
No 491
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.49 E-value=6e-05 Score=76.54 Aligned_cols=63 Identities=25% Similarity=0.384 Sum_probs=41.4
Q ss_pred eEEEeEEEeecCC-cccceeeeEEEe-------CCcEEEEECCCcchHHHHHHHHhcCCCC---CCCeEEECCE
Q 007122 459 IQFDNVHFSYLTE-RKILDGVSFVVP-------AGKSVAIVGTSGSGKSTILRLLFRSFDT---HSGSIRIDGQ 521 (617)
Q Consensus 459 I~~~nvsF~Y~~~-~~vL~~isl~I~-------~G~~vaIVG~SGsGKSTL~~LL~gl~~p---~~G~I~idG~ 521 (617)
+.|+++++.|+.. +.+++++++.++ +|++++++|++|+||||+++.|++.+.. ..|-|..|+.
T Consensus 41 i~f~~~~~~~~~vl~~v~~~l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ 114 (270)
T PRK06731 41 VKFENATMITEEVIEYILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 114 (270)
T ss_pred EEecCCCccccHHHHHHhcccEEeeCCcccccCCCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 4555555544321 244555555554 5699999999999999999999887643 3344445543
No 492
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.46 E-value=7.6e-05 Score=82.39 Aligned_cols=57 Identities=16% Similarity=0.291 Sum_probs=52.4
Q ss_pred CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCC
Q 007122 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT 527 (617)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~ 527 (617)
...+.+++++.+..|+.+.++|++|+||||+++.+.++++|.+|++.+++..+.++.
T Consensus 197 q~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 197 QQHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred cHHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 456889999999999999999999999999999999999999999999988887653
No 493
>PRK14530 adenylate kinase; Provisional
Probab=97.46 E-value=9.7e-05 Score=72.88 Aligned_cols=72 Identities=22% Similarity=0.254 Sum_probs=44.8
Q ss_pred CcEEEEECCCcchHHHHHHHHhcCCCC---CCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCC
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFRSFDT---HSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSAT 561 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~gl~~p---~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~ 561 (617)
|.+|.|+|++||||||+.+.|+..|.. +.|++ +|..+..-.++..--.+++++++..|.. .+
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~--------------lr~~~~~~~~~~~~~~~~~~~~~~~g~~-~~ 67 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDA--------------LRANKQMDISDMDTEYDTPGEYMDAGEL-VP 67 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHH--------------HHHhccCCcccccchHHHHHHHHHcCCC-CC
Confidence 668999999999999999999987753 22322 3333322112222223678999988753 45
Q ss_pred HHHHHHHHHH
Q 007122 562 EEEVYDAARR 571 (617)
Q Consensus 562 de~i~~a~~~ 571 (617)
++.+.+.++.
T Consensus 68 d~~~~~~l~~ 77 (215)
T PRK14530 68 DAVVNEIVEE 77 (215)
T ss_pred HHHHHHHHHH
Confidence 5555444443
No 494
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.44 E-value=6.9e-05 Score=74.14 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=23.1
Q ss_pred EEEEECCCcchHHHHHHHHhcCCCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSFDT 511 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~~p 511 (617)
.+||.|+|||||||+++.|.+.+.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 4899999999999999999999875
No 495
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.44 E-value=0.00012 Score=78.53 Aligned_cols=46 Identities=22% Similarity=0.406 Sum_probs=38.5
Q ss_pred ccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCE
Q 007122 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ 521 (617)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~ 521 (617)
.+++.+ ++|.+|++++|+|+||+|||||++.|+|..+++ .+.+.++
T Consensus 151 ~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d--v~Vi~lI 196 (444)
T PRK08972 151 RAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD--VIVVGLV 196 (444)
T ss_pred eeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC--EEEEEEE
Confidence 467777 999999999999999999999999999988774 4444433
No 496
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.43 E-value=6e-05 Score=70.96 Aligned_cols=46 Identities=26% Similarity=0.375 Sum_probs=32.4
Q ss_pred ECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhc-ceEEEccCC
Q 007122 491 VGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK-SIGVVPQDT 542 (617)
Q Consensus 491 VG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~-~i~~V~Qd~ 542 (617)
+|+|||||||+++.|.+.+ |.+.+||-.+. .....|+ ..++++|+.
T Consensus 1 ~G~sGsGKSTla~~la~~l----~~~~~~~d~~~--~~~~~~~~~~g~~~~~~ 47 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL----HAAFLDGDFLH--PRRNIEKMASGEPLNDD 47 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh----CCeEEeCccCC--chhhhccccCCCCCChh
Confidence 5999999999999999877 67899983321 1222333 356777763
No 497
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.42 E-value=8.1e-05 Score=70.83 Aligned_cols=38 Identities=34% Similarity=0.519 Sum_probs=32.6
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEE-ECC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR-IDG 520 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~-idG 520 (617)
++|+.++++|.+||||||+++.|.+.+.+..+.+. +|+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~ 40 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDG 40 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcC
Confidence 57999999999999999999999998876666654 665
No 498
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.41 E-value=0.00013 Score=68.94 Aligned_cols=36 Identities=31% Similarity=0.450 Sum_probs=31.0
Q ss_pred cEEEEECCCcchHHHHHHHHhcCCCCCC---CeEEECCE
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRSFDTHS---GSIRIDGQ 521 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl~~p~~---G~I~idG~ 521 (617)
..++|||+||||||||++-|.+...+.. |.|..++.
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~ 45 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 4799999999999999999998887644 89998666
No 499
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.40 E-value=6e-05 Score=71.84 Aligned_cols=41 Identities=37% Similarity=0.627 Sum_probs=34.4
Q ss_pred EeCCcEEEEECCCcchHHHHHHHHhcCCC-CCCCeEEECCEe
Q 007122 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFD-THSGSIRIDGQD 522 (617)
Q Consensus 482 I~~G~~vaIVG~SGsGKSTL~~LL~gl~~-p~~G~I~idG~~ 522 (617)
.++|..+.++|++||||||+++.|.+.+. +..|.+.+||.+
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~ 45 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE 45 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH
Confidence 56899999999999999999999987664 567888887643
No 500
>PRK07429 phosphoribulokinase; Provisional
Probab=97.39 E-value=0.00015 Score=75.90 Aligned_cols=53 Identities=26% Similarity=0.376 Sum_probs=39.7
Q ss_pred EEEEECCCcchHHHHHHHHhcCCCCCCCeE-EECCEeCCCCCHHHHhcceEEEccCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSFDTHSGSI-RIDGQDICEVTLESLRKSIGVVPQDT 542 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I-~idG~~i~~~~~~~lr~~i~~V~Qd~ 542 (617)
.|+|.|+|||||||+++.|.+++.+..+.+ ..|+ ...++.+ .|+.+++.+++|
T Consensus 10 IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd--~~~~~~~-~r~~~g~~~l~p 63 (327)
T PRK07429 10 LLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDD--YHSYDRK-QRKELGITALDP 63 (327)
T ss_pred EEEEECCCCCCHHHHHHHHHhHhccCceEEEEecc--cccCCHH-HHHhcCCcccCc
Confidence 799999999999999999999998887654 4554 3344433 356677766665
Done!