Query 007122
Match_columns 617
No_of_seqs 323 out of 2840
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 17:43:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007122.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007122hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 1E-75 3.4E-80 711.1 61.3 425 192-617 149-576 (1321)
2 4a82_A Cystic fibrosis transme 100.0 2.6E-72 9E-77 631.1 56.4 497 108-617 2-499 (578)
3 3qf4_A ABC transporter, ATP-bi 100.0 3.4E-72 1.2E-76 630.5 57.2 488 110-617 13-501 (587)
4 3qf4_B Uncharacterized ABC tra 100.0 4.2E-72 1.4E-76 631.5 53.1 492 105-617 22-513 (598)
5 3b5x_A Lipid A export ATP-bind 100.0 2.7E-70 9.2E-75 615.6 67.0 491 105-617 10-502 (582)
6 3b60_A Lipid A export ATP-bind 100.0 2.2E-70 7.5E-75 616.3 61.6 490 106-617 11-502 (582)
7 2yl4_A ATP-binding cassette SU 100.0 6.4E-70 2.2E-74 614.1 64.9 494 107-617 6-505 (595)
8 4f4c_A Multidrug resistance pr 100.0 2.9E-71 1E-75 672.0 46.0 424 193-617 808-1239(1321)
9 3g5u_A MCG1178, multidrug resi 100.0 3.3E-68 1.1E-72 643.8 54.5 502 108-617 35-548 (1284)
10 3g5u_A MCG1178, multidrug resi 100.0 8.9E-62 3.1E-66 587.7 48.4 480 127-617 707-1193(1284)
11 3nh6_A ATP-binding cassette SU 100.0 9.9E-50 3.4E-54 410.2 17.3 198 420-617 15-212 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 1.2E-40 4.2E-45 333.9 19.4 161 457-617 6-167 (247)
13 1mv5_A LMRA, multidrug resista 100.0 2.2E-40 7.6E-45 331.6 13.9 159 459-617 2-161 (243)
14 2ghi_A Transport protein; mult 100.0 3.6E-39 1.2E-43 325.8 17.5 160 457-617 16-177 (260)
15 2ixe_A Antigen peptide transpo 100.0 9E-39 3.1E-43 324.6 18.0 161 457-617 15-178 (271)
16 3gd7_A Fusion complex of cysti 100.0 3.7E-38 1.3E-42 334.1 17.4 161 455-617 16-177 (390)
17 2pze_A Cystic fibrosis transme 100.0 2.8E-36 9.6E-41 299.1 17.4 147 457-617 5-152 (229)
18 2cbz_A Multidrug resistance-as 100.0 5.7E-36 1.9E-40 298.3 13.9 146 458-617 3-149 (237)
19 1ji0_A ABC transporter; ATP bi 100.0 2.1E-34 7.2E-39 287.6 15.5 153 458-617 6-161 (240)
20 3tui_C Methionine import ATP-b 100.0 2.8E-34 9.5E-39 300.3 12.7 150 457-617 23-185 (366)
21 3gfo_A Cobalt import ATP-bindi 100.0 7.3E-34 2.5E-38 288.4 15.4 149 458-617 7-165 (275)
22 3tif_A Uncharacterized ABC tra 100.0 1E-33 3.6E-38 281.6 15.3 148 459-617 2-167 (235)
23 2bbs_A Cystic fibrosis transme 100.0 8.2E-34 2.8E-38 290.2 13.9 143 457-617 39-181 (290)
24 1sgw_A Putative ABC transporte 100.0 1.4E-33 4.7E-38 276.1 13.3 143 456-617 8-155 (214)
25 2pcj_A ABC transporter, lipopr 100.0 9E-34 3.1E-38 280.1 10.5 148 458-617 4-162 (224)
26 2yz2_A Putative ABC transporte 100.0 2.8E-33 9.4E-38 283.7 14.1 145 459-617 3-160 (266)
27 4g1u_C Hemin import ATP-bindin 100.0 3E-33 1E-37 283.0 13.4 148 458-617 11-169 (266)
28 1vpl_A ABC transporter, ATP-bi 100.0 2.3E-33 8E-38 282.1 12.2 148 457-617 14-168 (256)
29 2olj_A Amino acid ABC transpor 100.0 1.2E-32 4.2E-37 277.8 16.7 148 458-617 24-181 (263)
30 3fvq_A Fe(3+) IONS import ATP- 100.0 5.7E-33 2E-37 290.3 13.7 148 458-617 4-160 (359)
31 1g6h_A High-affinity branched- 100.0 1.5E-32 5.1E-37 277.1 15.6 152 458-617 7-175 (257)
32 1z47_A CYSA, putative ABC-tran 100.0 4.7E-33 1.6E-37 291.1 11.5 148 457-617 13-167 (355)
33 2ihy_A ABC transporter, ATP-bi 100.0 4.3E-33 1.5E-37 283.7 10.8 148 458-617 21-183 (279)
34 1b0u_A Histidine permease; ABC 100.0 7.8E-33 2.7E-37 279.7 12.3 149 458-617 6-175 (262)
35 3rlf_A Maltose/maltodextrin im 100.0 5E-33 1.7E-37 292.7 10.7 146 458-617 3-155 (381)
36 2yyz_A Sugar ABC transporter, 100.0 1.5E-32 5.1E-37 288.0 14.0 146 458-617 3-155 (359)
37 2it1_A 362AA long hypothetical 100.0 8.2E-33 2.8E-37 290.3 11.0 146 458-617 3-155 (362)
38 3d31_A Sulfate/molybdate ABC t 100.0 1.7E-32 5.8E-37 286.7 12.6 144 459-617 2-149 (348)
39 1oxx_K GLCV, glucose, ABC tran 100.0 1.5E-32 5.2E-37 288.1 11.9 148 458-617 3-162 (353)
40 2qi9_C Vitamin B12 import ATP- 100.0 2.2E-32 7.6E-37 273.8 12.4 141 458-615 4-146 (249)
41 1v43_A Sugar-binding transport 100.0 2.7E-32 9.2E-37 287.4 13.5 146 458-617 11-163 (372)
42 2onk_A Molybdate/tungstate ABC 100.0 2.7E-32 9.2E-37 271.9 12.3 142 459-617 2-148 (240)
43 1g29_1 MALK, maltose transport 100.0 3.9E-32 1.3E-36 286.7 10.7 146 458-617 3-161 (372)
44 2d2e_A SUFC protein; ABC-ATPas 100.0 3.7E-32 1.3E-36 273.0 9.1 149 458-617 3-165 (250)
45 2pjz_A Hypothetical protein ST 100.0 8.8E-32 3E-36 271.5 10.7 142 459-617 2-150 (263)
46 2nq2_C Hypothetical ABC transp 100.0 1.2E-31 4E-36 269.5 10.5 136 458-617 4-150 (253)
47 2zu0_C Probable ATP-dependent 100.0 8.5E-31 2.9E-35 265.5 15.6 152 458-617 20-186 (267)
48 2v9p_A Replication protein E1; 100.0 1.7E-33 5.9E-38 288.4 -10.8 184 388-617 34-219 (305)
49 2f1r_A Molybdopterin-guanine d 99.9 1.4E-26 4.9E-31 218.2 -8.3 110 486-616 3-124 (171)
50 2iw3_A Elongation factor 3A; a 99.9 9.1E-24 3.1E-28 244.4 9.0 85 458-553 671-761 (986)
51 3ozx_A RNAse L inhibitor; ATP 99.9 1.3E-23 4.4E-28 232.3 8.7 136 457-617 268-407 (538)
52 3bk7_A ABC transporter ATP-bin 99.9 1.9E-23 6.6E-28 233.9 7.5 134 458-617 357-493 (607)
53 1yqt_A RNAse L inhibitor; ATP- 99.9 2.2E-23 7.4E-28 231.1 6.7 134 458-617 287-423 (538)
54 3bk7_A ABC transporter ATP-bin 99.9 1.1E-23 3.8E-28 235.9 3.6 145 458-617 83-250 (607)
55 1yqt_A RNAse L inhibitor; ATP- 99.9 2.7E-23 9.4E-28 230.3 2.5 144 459-617 21-180 (538)
56 2gza_A Type IV secretion syste 99.8 1.9E-25 6.6E-30 236.0 -19.2 219 385-609 55-301 (361)
57 3j16_B RLI1P; ribosome recycli 99.8 1.6E-21 5.6E-26 217.9 8.3 133 461-617 349-489 (608)
58 2iw3_A Elongation factor 3A; a 99.8 2.3E-20 7.8E-25 216.2 15.4 135 456-617 433-570 (986)
59 3j16_B RLI1P; ribosome recycli 99.8 4.5E-21 1.5E-25 214.4 4.9 142 463-617 82-243 (608)
60 2npi_A Protein CLP1; CLP1-PCF1 99.8 5.1E-24 1.7E-28 231.0 -18.5 130 457-616 117-258 (460)
61 3ux8_A Excinuclease ABC, A sub 99.8 6.8E-20 2.3E-24 209.1 7.5 138 471-617 30-226 (670)
62 3aez_A Pantothenate kinase; tr 99.8 1.8E-22 6.2E-27 208.6 -13.2 129 456-617 41-198 (312)
63 1z6g_A Guanylate kinase; struc 99.8 1.2E-21 4.1E-26 192.5 -6.8 121 473-616 11-148 (218)
64 3ozx_A RNAse L inhibitor; ATP 99.8 4.3E-20 1.5E-24 204.2 3.8 139 463-617 4-160 (538)
65 2pt7_A CAG-ALFA; ATPase, prote 99.8 2.2E-22 7.4E-27 209.8 -16.2 159 393-617 75-244 (330)
66 3ux8_A Excinuclease ABC, A sub 99.8 1.8E-19 6E-24 205.7 3.4 134 471-615 334-563 (670)
67 2eyu_A Twitching motility prot 99.7 1E-20 3.5E-25 190.7 -8.5 144 459-616 6-191 (261)
68 1lw7_A Transcriptional regulat 99.7 7.2E-21 2.5E-25 201.6 -10.8 142 474-617 157-323 (365)
69 3b85_A Phosphate starvation-in 99.7 8.4E-21 2.9E-25 184.7 -9.6 114 471-617 12-126 (208)
70 4aby_A DNA repair protein RECN 99.7 5.2E-18 1.8E-22 182.7 9.8 83 473-556 49-170 (415)
71 2ewv_A Twitching motility prot 99.7 1.2E-19 4E-24 192.3 -7.4 135 473-616 126-302 (372)
72 2dpy_A FLII, flagellum-specifi 99.7 2.6E-18 8.9E-23 185.3 -0.8 135 457-616 130-275 (438)
73 3sop_A Neuronal-specific septi 99.7 1.7E-19 5.8E-24 182.7 -10.0 110 487-611 4-114 (270)
74 3pih_A Uvrabc system protein A 99.7 4.5E-17 1.5E-21 188.6 8.7 133 472-614 597-824 (916)
75 2vf7_A UVRA2, excinuclease ABC 99.7 1.4E-17 4.9E-22 191.2 4.1 46 457-508 501-547 (842)
76 1tq4_A IIGP1, interferon-induc 99.7 7.6E-19 2.6E-23 187.2 -6.3 116 472-612 36-173 (413)
77 1e69_A Chromosome segregation 99.6 1.7E-16 5.8E-21 165.1 7.2 150 458-617 5-245 (322)
78 2r6f_A Excinuclease ABC subuni 99.6 1.4E-16 4.8E-21 183.1 6.8 140 458-614 629-864 (972)
79 1ye8_A Protein THEP1, hypothet 99.6 1.1E-17 3.9E-22 158.6 -3.3 97 487-617 2-103 (178)
80 4gp7_A Metallophosphoesterase; 99.6 9.4E-17 3.2E-21 151.4 2.0 103 477-617 1-105 (171)
81 2ygr_A Uvrabc system protein A 99.6 6.7E-16 2.3E-20 178.2 8.4 44 457-506 646-689 (993)
82 3b9q_A Chloroplast SRP recepto 99.6 2E-17 6.7E-22 170.1 -6.0 123 476-615 91-221 (302)
83 2jeo_A Uridine-cytidine kinase 99.6 3.2E-17 1.1E-21 163.8 -5.9 120 470-617 10-137 (245)
84 2og2_A Putative signal recogni 99.5 1.1E-16 3.9E-21 167.5 -5.3 123 476-615 148-278 (359)
85 1odf_A YGR205W, hypothetical 3 99.5 3.6E-17 1.2E-21 167.2 -9.7 117 483-617 29-156 (290)
86 2obl_A ESCN; ATPase, hydrolase 99.5 3.8E-15 1.3E-19 155.8 4.9 137 457-616 44-188 (347)
87 3c8u_A Fructokinase; YP_612366 99.5 6.7E-17 2.3E-21 157.3 -11.1 111 482-616 19-133 (208)
88 1htw_A HI0065; nucleotide-bind 99.5 2.4E-16 8.1E-21 146.4 -7.6 89 461-556 10-99 (158)
89 1zp6_A Hypothetical protein AT 99.5 8.4E-16 2.9E-20 146.9 -4.7 123 481-617 5-131 (191)
90 1p9r_A General secretion pathw 99.5 1.1E-16 3.7E-21 171.3 -12.6 140 459-616 144-312 (418)
91 1rj9_A FTSY, signal recognitio 99.5 7.3E-15 2.5E-19 150.9 1.4 115 484-615 101-222 (304)
92 1lvg_A Guanylate kinase, GMP k 99.5 1.9E-16 6.6E-21 152.9 -10.4 113 482-616 1-127 (198)
93 3asz_A Uridine kinase; cytidin 99.4 9.6E-16 3.3E-20 149.1 -6.7 107 482-617 3-115 (211)
94 1pui_A ENGB, probable GTP-bind 99.4 5.5E-15 1.9E-19 143.1 -1.5 142 459-616 4-171 (210)
95 2i3b_A HCR-ntpase, human cance 99.4 2.1E-15 7E-20 144.3 -6.6 105 485-617 1-109 (189)
96 2rcn_A Probable GTPase ENGC; Y 99.4 1.6E-13 5.6E-18 143.1 6.9 124 473-612 204-330 (358)
97 2qag_B Septin-6, protein NEDD5 99.4 4.3E-14 1.5E-18 150.5 -0.1 144 458-616 16-179 (427)
98 2qm8_A GTPase/ATPase; G protei 99.3 3.7E-15 1.3E-19 155.7 -11.0 87 459-546 30-120 (337)
99 1nij_A Hypothetical protein YJ 99.3 2.1E-15 7.1E-20 156.5 -12.9 126 486-617 5-163 (318)
100 1tf7_A KAIC; homohexamer, hexa 99.3 9.8E-16 3.3E-20 169.8 -17.3 129 467-613 20-151 (525)
101 2qag_C Septin-7; cell cycle, c 99.3 2.7E-14 9.1E-19 152.7 -6.1 128 457-615 10-138 (418)
102 1znw_A Guanylate kinase, GMP k 99.3 7.8E-14 2.7E-18 135.4 -3.9 109 471-585 8-135 (207)
103 2yv5_A YJEQ protein; hydrolase 99.3 1.8E-13 6.2E-18 140.7 -1.9 114 481-608 161-300 (302)
104 2qnr_A Septin-2, protein NEDD5 99.2 8.7E-14 3E-18 143.0 -7.5 125 462-610 2-128 (301)
105 3qf7_A RAD50; ABC-ATPase, ATPa 99.2 2.8E-11 9.5E-16 127.7 9.0 31 475-506 14-44 (365)
106 1sq5_A Pantothenate kinase; P- 99.2 5.3E-13 1.8E-17 137.7 -4.3 91 457-555 36-151 (308)
107 2yhs_A FTSY, cell division pro 99.2 4E-12 1.4E-16 137.0 1.8 82 475-556 283-371 (503)
108 1tf7_A KAIC; homohexamer, hexa 99.2 1.3E-11 4.6E-16 136.6 5.1 117 459-617 258-375 (525)
109 1u0l_A Probable GTPase ENGC; p 99.2 4.3E-12 1.5E-16 130.4 0.8 103 480-583 164-290 (301)
110 2x8a_A Nuclear valosin-contain 99.1 3.1E-14 1.1E-18 144.4 -15.4 125 472-617 33-159 (274)
111 4e22_A Cytidylate kinase; P-lo 99.1 1.7E-12 5.8E-17 130.0 -2.6 102 483-591 25-144 (252)
112 1cr0_A DNA primase/helicase; R 99.1 6.7E-12 2.3E-16 128.5 1.0 128 472-617 22-151 (296)
113 2oap_1 GSPE-2, type II secreti 99.1 2.7E-12 9.3E-17 140.8 -2.2 131 473-607 248-412 (511)
114 1ewq_A DNA mismatch repair pro 99.1 2.4E-11 8.1E-16 139.0 5.5 103 457-617 549-659 (765)
115 3szr_A Interferon-induced GTP- 99.1 1.8E-12 6.3E-17 145.6 -3.7 95 458-555 10-120 (608)
116 2o8b_B DNA mismatch repair pro 99.1 1.3E-11 4.5E-16 145.3 2.8 111 457-617 749-872 (1022)
117 1pzn_A RAD51, DNA repair and r 99.1 3.8E-12 1.3E-16 133.5 -2.1 86 462-557 111-204 (349)
118 1cke_A CK, MSSA, protein (cyti 99.1 3.9E-13 1.3E-17 131.9 -9.2 120 484-615 4-142 (227)
119 3euj_A Chromosome partition pr 99.1 3.7E-11 1.3E-15 130.0 4.2 80 460-543 8-95 (483)
120 4a74_A DNA repair and recombin 99.0 1.7E-11 5.8E-16 120.1 -0.6 90 460-558 3-99 (231)
121 3jvv_A Twitching mobility prot 99.0 1E-10 3.4E-15 122.6 2.1 78 462-543 92-178 (356)
122 1t9h_A YLOQ, probable GTPase E 99.0 1.2E-10 4.1E-15 119.3 1.6 73 480-554 168-248 (307)
123 1s96_A Guanylate kinase, GMP k 99.0 3.8E-11 1.3E-15 117.4 -2.0 88 480-571 11-107 (219)
124 3e70_C DPA, signal recognition 99.0 1.9E-10 6.4E-15 119.2 3.0 76 481-556 125-207 (328)
125 3ney_A 55 kDa erythrocyte memb 98.9 9.2E-11 3.1E-15 112.2 0.4 83 479-570 13-108 (197)
126 1iy2_A ATP-dependent metallopr 98.9 1.8E-12 6E-17 131.7 -12.5 133 460-617 51-191 (278)
127 3tr0_A Guanylate kinase, GMP k 98.9 1.5E-10 5.1E-15 111.4 1.4 129 479-611 1-158 (205)
128 3a00_A Guanylate kinase, GMP k 98.9 2.6E-11 8.9E-16 115.4 -4.3 117 485-611 1-154 (186)
129 1qhl_A Protein (cell division 98.9 4E-11 1.4E-15 117.6 -3.2 75 458-541 9-91 (227)
130 2o5v_A DNA replication and rep 98.9 1.7E-09 6E-14 113.2 8.1 33 474-507 16-48 (359)
131 3lnc_A Guanylate kinase, GMP k 98.9 1.6E-10 5.3E-15 113.9 -0.2 58 473-532 15-85 (231)
132 1ixz_A ATP-dependent metallopr 98.9 2.6E-12 8.9E-17 128.5 -14.5 135 458-617 25-167 (254)
133 1kgd_A CASK, peripheral plasma 98.9 1.9E-10 6.6E-15 108.8 -1.1 81 483-570 3-94 (180)
134 1in4_A RUVB, holliday junction 98.8 4E-12 1.4E-16 132.6 -16.7 94 459-554 19-123 (334)
135 1udx_A The GTP-binding protein 98.7 3.3E-10 1.1E-14 120.9 -4.8 123 475-617 147-274 (416)
136 1nlf_A Regulatory protein REPA 98.7 1.1E-08 3.7E-13 103.6 6.0 111 481-617 26-137 (279)
137 2qt1_A Nicotinamide riboside k 98.7 2.8E-09 9.7E-14 102.8 0.3 53 480-558 16-68 (207)
138 2ehv_A Hypothetical protein PH 98.7 1.8E-09 6E-14 107.1 -1.4 82 458-543 6-89 (251)
139 3nwj_A ATSK2; P loop, shikimat 98.6 2.3E-09 8E-14 106.7 -1.2 52 458-509 17-72 (250)
140 2j41_A Guanylate kinase; GMP, 98.6 4.4E-09 1.5E-13 101.1 -0.5 60 480-542 1-60 (207)
141 3lda_A DNA repair protein RAD5 98.6 2.5E-08 8.4E-13 106.0 5.1 114 481-604 174-302 (400)
142 1n0w_A DNA repair protein RAD5 98.6 2.2E-08 7.6E-13 98.6 4.4 81 481-569 20-108 (243)
143 3kta_A Chromosome segregation 98.6 3.1E-09 1E-13 100.3 -2.3 66 476-542 18-89 (182)
144 1vma_A Cell division protein F 98.6 1.2E-08 4E-13 104.6 1.3 46 478-523 97-142 (306)
145 3qkt_A DNA double-strand break 98.6 1.5E-07 5.3E-12 98.0 9.8 34 477-511 16-50 (339)
146 3thx_A DNA mismatch repair pro 98.6 1.6E-07 5.6E-12 109.4 10.9 58 457-514 630-699 (934)
147 3thx_B DNA mismatch repair pro 98.5 2.4E-08 8.3E-13 116.0 2.7 49 457-507 639-695 (918)
148 3uie_A Adenylyl-sulfate kinase 98.5 3.7E-09 1.2E-13 101.6 -4.7 51 473-524 13-65 (200)
149 4eun_A Thermoresistant glucoki 98.5 1.9E-08 6.5E-13 96.6 0.1 69 479-553 23-93 (200)
150 3tau_A Guanylate kinase, GMP k 98.5 1.8E-08 6.3E-13 97.4 -0.2 70 483-556 6-86 (208)
151 2cvh_A DNA repair and recombin 98.4 4.6E-08 1.6E-12 94.7 1.6 47 472-520 6-53 (220)
152 2bbw_A Adenylate kinase 4, AK4 98.4 1.5E-08 5E-13 100.7 -2.3 68 484-555 26-97 (246)
153 2bdt_A BH3686; alpha-beta prot 98.4 3.1E-08 1.1E-12 94.0 -0.0 61 485-554 2-63 (189)
154 2w0m_A SSO2452; RECA, SSPF, un 98.4 3.5E-08 1.2E-12 96.3 0.3 52 471-522 8-60 (235)
155 1zu4_A FTSY; GTPase, signal re 98.4 6E-08 2.1E-12 100.1 2.0 82 474-555 94-186 (320)
156 3ice_A Transcription terminati 98.4 5E-08 1.7E-12 101.4 0.7 53 457-509 132-198 (422)
157 3vaa_A Shikimate kinase, SK; s 98.3 2.6E-07 8.8E-12 88.5 3.2 43 467-509 5-49 (199)
158 1wb9_A DNA mismatch repair pro 98.3 4.8E-07 1.6E-11 104.1 6.0 131 457-611 576-716 (800)
159 2dy1_A Elongation factor G; tr 98.3 4.1E-08 1.4E-12 111.4 -3.6 94 479-574 3-100 (665)
160 2vp4_A Deoxynucleoside kinase; 98.3 4.6E-08 1.6E-12 96.1 -3.1 64 479-546 14-87 (230)
161 2dhr_A FTSH; AAA+ protein, hex 98.2 1.8E-08 6E-13 110.0 -6.7 90 459-553 41-132 (499)
162 3cr8_A Sulfate adenylyltranfer 98.2 6.7E-08 2.3E-12 106.7 -2.9 71 480-555 364-446 (552)
163 1svm_A Large T antigen; AAA+ f 98.2 1.8E-07 6.2E-12 98.5 -1.2 129 472-615 156-302 (377)
164 1ls1_A Signal recognition part 98.1 2.3E-07 7.7E-12 94.7 -2.9 62 459-525 77-138 (295)
165 2kjq_A DNAA-related protein; s 98.0 2.4E-06 8.1E-11 77.9 3.5 48 473-526 29-78 (149)
166 1rz3_A Hypothetical protein rb 98.0 1.2E-06 4E-11 84.1 1.1 47 481-527 18-64 (201)
167 1knq_A Gluconate kinase; ALFA/ 98.0 1.2E-06 4.2E-11 81.6 1.2 53 483-541 6-59 (175)
168 1sxj_E Activator 1 40 kDa subu 97.9 2.8E-06 9.6E-11 88.5 2.1 57 486-544 37-94 (354)
169 3tqc_A Pantothenate kinase; bi 97.9 1.1E-06 3.6E-11 90.5 -2.2 44 472-515 73-124 (321)
170 3t34_A Dynamin-related protein 97.8 4.9E-06 1.7E-10 87.3 2.0 47 472-521 24-72 (360)
171 2pez_A Bifunctional 3'-phospho 97.8 1.8E-06 6.1E-11 80.9 -1.5 41 483-524 3-45 (179)
172 1f6b_A SAR1; gtpases, N-termin 97.8 4.7E-06 1.6E-10 79.4 1.3 58 465-523 6-71 (198)
173 3hr8_A Protein RECA; alpha and 97.8 8E-06 2.7E-10 85.1 2.6 61 481-544 57-118 (356)
174 1oix_A RAS-related protein RAB 97.8 1.1E-05 3.9E-10 76.2 3.4 37 487-523 31-78 (191)
175 3k1j_A LON protease, ATP-depen 97.7 5E-06 1.7E-10 93.4 0.7 67 471-542 46-113 (604)
176 3ec2_A DNA replication protein 97.7 3.4E-06 1.2E-10 79.1 -0.9 37 479-515 32-68 (180)
177 2vf7_A UVRA2, excinuclease ABC 97.7 4.7E-06 1.6E-10 96.0 -0.4 112 493-615 270-399 (842)
178 3pih_A Uvrabc system protein A 97.7 9E-06 3.1E-10 94.4 1.5 95 505-615 388-484 (916)
179 2qtf_A Protein HFLX, GTP-bindi 97.7 2E-05 6.9E-10 82.6 4.0 50 487-542 181-241 (364)
180 3r20_A Cytidylate kinase; stru 97.7 3.7E-06 1.3E-10 82.4 -1.6 71 484-554 8-96 (233)
181 2px0_A Flagellar biosynthesis 97.7 1.7E-05 5.8E-10 80.8 3.2 32 483-514 103-134 (296)
182 1ni3_A YCHF GTPase, YCHF GTP-b 97.6 1.9E-05 6.6E-10 83.3 3.4 41 481-521 16-68 (392)
183 3m6a_A ATP-dependent protease 97.6 6.9E-06 2.4E-10 90.9 -0.3 79 461-541 86-164 (543)
184 2f9l_A RAB11B, member RAS onco 97.6 2.2E-05 7.6E-10 74.5 2.7 37 487-523 7-54 (199)
185 1mky_A Probable GTP-binding pr 97.6 2.8E-05 9.5E-10 83.8 3.4 70 486-555 181-263 (439)
186 4ad8_A DNA repair protein RECN 97.6 2.1E-05 7.1E-10 86.6 2.2 79 458-545 42-159 (517)
187 1w1w_A Structural maintenance 97.6 3.1E-05 1.1E-09 83.1 3.5 49 458-513 6-54 (430)
188 1kag_A SKI, shikimate kinase I 97.5 2.9E-05 1E-09 71.9 2.5 33 484-520 3-35 (173)
189 4eaq_A DTMP kinase, thymidylat 97.5 2.5E-05 8.4E-10 76.5 1.9 44 475-519 13-59 (229)
190 1m7g_A Adenylylsulfate kinase; 97.5 9.1E-06 3.1E-10 78.3 -1.2 43 480-522 20-64 (211)
191 2qor_A Guanylate kinase; phosp 97.5 1.2E-05 4.3E-10 76.9 -0.4 53 481-533 8-71 (204)
192 2p67_A LAO/AO transport system 97.5 1.4E-05 4.8E-10 83.2 -0.8 53 472-524 43-95 (341)
193 2ffh_A Protein (FFH); SRP54, s 97.4 2E-05 6.7E-10 84.1 -0.5 63 459-526 77-139 (425)
194 1uf9_A TT1252 protein; P-loop, 97.4 1.7E-05 5.9E-10 75.4 -1.3 32 485-521 8-39 (203)
195 2jaq_A Deoxyguanosine kinase; 97.4 8.4E-06 2.9E-10 77.6 -3.7 69 487-555 2-86 (205)
196 1f2t_B RAD50 ABC-ATPase; DNA d 97.4 5.6E-05 1.9E-09 68.6 2.0 34 584-617 41-85 (148)
197 1m2o_B GTP-binding protein SAR 97.3 9.9E-05 3.4E-09 69.5 3.5 50 473-523 12-69 (190)
198 2www_A Methylmalonic aciduria 97.3 4.8E-05 1.6E-09 79.3 1.4 42 483-524 72-113 (349)
199 2gj8_A MNME, tRNA modification 97.3 0.00012 4E-09 67.8 3.7 27 483-509 2-28 (172)
200 2dr3_A UPF0273 protein PH0284; 97.3 2.1E-05 7.3E-10 77.1 -2.2 65 473-541 10-79 (247)
201 1y63_A LMAJ004144AAA protein; 97.2 0.00014 4.8E-09 68.3 3.1 32 477-508 2-33 (184)
202 1sxj_C Activator 1 40 kDa subu 97.1 1.6E-05 5.5E-10 82.5 -4.7 70 471-540 30-102 (340)
203 1lv7_A FTSH; alpha/beta domain 97.1 0.00019 6.5E-09 71.1 3.1 46 474-523 36-81 (257)
204 2ius_A DNA translocase FTSK; n 97.1 0.00023 8E-09 77.4 3.5 55 477-531 159-215 (512)
205 2r6a_A DNAB helicase, replicat 97.1 0.00025 8.6E-09 76.6 3.6 122 473-616 191-316 (454)
206 1j8m_F SRP54, signal recogniti 97.0 7.4E-05 2.5E-09 76.0 -0.7 50 476-526 89-139 (297)
207 2r6f_A Excinuclease ABC subuni 97.0 0.00026 9E-09 81.9 3.7 39 458-502 23-61 (972)
208 2ygr_A Uvrabc system protein A 97.0 0.00026 9E-09 82.2 3.7 39 458-502 25-63 (993)
209 2yvu_A Probable adenylyl-sulfa 97.0 0.00019 6.5E-09 67.3 1.9 40 481-520 9-49 (186)
210 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00036 1.2E-08 63.2 3.7 28 478-506 17-44 (149)
211 2qag_A Septin-2, protein NEDD5 97.0 0.0001 3.4E-09 77.2 -0.3 53 457-516 16-68 (361)
212 1jjv_A Dephospho-COA kinase; P 97.0 0.00036 1.2E-08 66.5 3.5 29 487-520 4-32 (206)
213 2p5t_B PEZT; postsegregational 97.0 0.00019 6.4E-09 71.2 1.4 41 481-523 28-68 (253)
214 3kta_B Chromosome segregation 96.9 0.0003 1E-08 65.5 2.4 25 593-617 62-90 (173)
215 3t61_A Gluconokinase; PSI-biol 96.9 0.00019 6.4E-09 68.3 0.9 34 485-522 18-51 (202)
216 1ex7_A Guanylate kinase; subst 96.9 0.00027 9.2E-09 66.6 2.0 45 488-534 4-61 (186)
217 2wji_A Ferrous iron transport 96.9 0.00078 2.7E-08 61.6 4.6 24 486-509 4-27 (165)
218 2ohf_A Protein OLA1, GTP-bindi 96.8 0.00042 1.5E-08 72.9 3.0 41 481-521 18-69 (396)
219 1ypw_A Transitional endoplasmi 96.8 9.3E-05 3.2E-09 85.7 -2.4 61 480-542 233-293 (806)
220 2wjg_A FEOB, ferrous iron tran 96.8 0.00057 1.9E-08 63.6 3.1 37 486-522 8-55 (188)
221 2zej_A Dardarin, leucine-rich 96.7 0.00069 2.4E-08 63.1 3.3 23 487-509 4-26 (184)
222 1np6_A Molybdopterin-guanine d 96.7 0.00041 1.4E-08 64.7 1.7 38 485-522 6-46 (174)
223 2if2_A Dephospho-COA kinase; a 96.7 0.00074 2.5E-08 64.1 3.3 21 487-507 3-23 (204)
224 3qf4_B Uncharacterized ABC tra 96.7 1.1 3.9E-05 49.6 30.5 14 459-472 369-382 (598)
225 4ag6_A VIRB4 ATPase, type IV s 96.7 0.0006 2.1E-08 72.1 2.5 55 464-519 11-69 (392)
226 1qhx_A CPT, protein (chloramph 96.6 0.00097 3.3E-08 61.7 3.5 26 484-509 2-27 (178)
227 3cm0_A Adenylate kinase; ATP-b 96.6 0.00088 3E-08 62.5 2.8 25 483-507 2-26 (186)
228 3ihw_A Centg3; RAS, centaurin, 96.6 0.0019 6.6E-08 60.2 5.1 36 487-522 22-66 (184)
229 2ga8_A Hypothetical 39.9 kDa p 96.5 0.00035 1.2E-08 72.2 -0.5 37 473-509 10-48 (359)
230 4a1f_A DNAB helicase, replicat 96.5 0.00048 1.6E-08 71.1 0.2 36 474-509 35-70 (338)
231 3kb2_A SPBC2 prophage-derived 96.4 0.0015 5E-08 59.9 3.2 24 486-509 2-25 (173)
232 3trf_A Shikimate kinase, SK; a 96.4 0.0016 5.4E-08 60.7 3.3 26 484-509 4-29 (185)
233 4a82_A Cystic fibrosis transme 96.4 1.2 4E-05 49.3 27.1 14 459-472 355-368 (578)
234 1gtv_A TMK, thymidylate kinase 96.4 0.00043 1.5E-08 66.1 -0.7 26 487-512 2-27 (214)
235 1kht_A Adenylate kinase; phosp 96.4 0.0017 5.7E-08 60.6 3.4 26 484-509 2-27 (192)
236 3qks_A DNA double-strand break 96.3 0.002 6.7E-08 61.6 3.7 28 478-506 17-44 (203)
237 2v54_A DTMP kinase, thymidylat 96.3 0.002 6.8E-08 60.9 3.5 27 483-509 2-28 (204)
238 2zr9_A Protein RECA, recombina 96.3 0.0012 4.1E-08 68.7 2.1 60 481-543 57-117 (349)
239 1vht_A Dephospho-COA kinase; s 96.3 0.0023 7.8E-08 61.5 3.9 24 484-507 3-26 (218)
240 1fzq_A ADP-ribosylation factor 96.3 0.0018 6E-08 60.2 2.9 38 485-522 16-61 (181)
241 2rhm_A Putative kinase; P-loop 96.3 0.0017 5.9E-08 60.7 2.8 27 483-509 3-29 (193)
242 1q3t_A Cytidylate kinase; nucl 96.3 0.002 6.7E-08 62.9 3.2 26 482-507 13-38 (236)
243 1ega_A Protein (GTP-binding pr 96.2 0.0014 4.9E-08 66.6 2.2 25 484-508 7-31 (301)
244 1gvn_B Zeta; postsegregational 96.2 0.0022 7.5E-08 64.8 3.4 36 483-520 31-66 (287)
245 3lxx_A GTPase IMAP family memb 96.2 0.0028 9.5E-08 61.8 4.0 28 487-514 31-58 (239)
246 1jal_A YCHF protein; nucleotid 96.2 0.0034 1.2E-07 65.3 4.6 36 485-520 2-48 (363)
247 2z43_A DNA repair and recombin 96.2 0.0014 4.8E-08 67.4 1.6 79 481-569 103-191 (324)
248 3iij_A Coilin-interacting nucl 96.1 0.0016 5.4E-08 60.5 1.8 25 483-507 9-33 (180)
249 3lw7_A Adenylate kinase relate 96.1 0.0025 8.4E-08 58.3 3.0 20 486-505 2-21 (179)
250 3qf4_A ABC transporter, ATP-bi 96.1 2.3 7.8E-05 47.0 33.4 15 458-472 356-370 (587)
251 2c95_A Adenylate kinase 1; tra 96.1 0.0025 8.6E-08 59.7 2.9 27 483-509 7-33 (196)
252 2wwf_A Thymidilate kinase, put 96.1 0.0027 9.1E-08 60.4 3.1 26 483-508 8-33 (212)
253 2plr_A DTMP kinase, probable t 96.1 0.003 1E-07 59.9 3.4 28 484-511 3-30 (213)
254 1nn5_A Similar to deoxythymidy 96.0 0.0029 1E-07 60.2 3.1 27 482-508 6-32 (215)
255 1ko7_A HPR kinase/phosphatase; 95.9 0.0022 7.6E-08 65.2 1.9 34 473-507 133-166 (314)
256 1via_A Shikimate kinase; struc 95.9 0.003 1E-07 58.3 2.6 23 487-509 6-28 (175)
257 2vli_A Antibiotic resistance p 95.9 0.0028 9.6E-08 58.7 2.4 27 483-509 3-29 (183)
258 2ze6_A Isopentenyl transferase 95.9 0.0032 1.1E-07 62.2 2.9 24 486-509 2-25 (253)
259 1xjc_A MOBB protein homolog; s 95.9 0.0021 7.3E-08 59.4 1.3 35 486-520 5-42 (169)
260 1tev_A UMP-CMP kinase; ploop, 95.9 0.0041 1.4E-07 58.1 3.2 26 484-509 2-27 (196)
261 3kl4_A SRP54, signal recogniti 95.9 0.0022 7.5E-08 68.4 1.5 41 484-524 96-136 (433)
262 1ly1_A Polynucleotide kinase; 95.8 0.004 1.4E-07 57.4 3.1 22 486-507 3-24 (181)
263 2bwj_A Adenylate kinase 5; pho 95.8 0.003 1E-07 59.4 2.2 28 482-509 9-36 (199)
264 1aky_A Adenylate kinase; ATP:A 95.7 0.0052 1.8E-07 59.0 3.5 27 483-509 2-28 (220)
265 2lkc_A Translation initiation 95.7 0.013 4.4E-07 53.5 5.9 25 483-507 6-30 (178)
266 1nks_A Adenylate kinase; therm 95.6 0.0046 1.6E-07 57.6 2.7 24 487-510 3-26 (194)
267 2erx_A GTP-binding protein DI- 95.6 0.0095 3.3E-07 53.8 4.7 21 487-507 5-25 (172)
268 2cdn_A Adenylate kinase; phosp 95.6 0.0061 2.1E-07 57.6 3.5 26 484-509 19-44 (201)
269 2iyv_A Shikimate kinase, SK; t 95.6 0.0046 1.6E-07 57.4 2.5 25 485-509 2-26 (184)
270 3cbq_A GTP-binding protein REM 95.6 0.0049 1.7E-07 58.0 2.7 22 487-508 25-46 (195)
271 3cf0_A Transitional endoplasmi 95.6 0.0038 1.3E-07 63.4 1.9 30 480-509 44-73 (301)
272 3fb4_A Adenylate kinase; psych 95.6 0.0057 2E-07 58.4 3.1 23 487-509 2-24 (216)
273 1zuh_A Shikimate kinase; alpha 95.5 0.0067 2.3E-07 55.5 3.3 24 485-508 7-30 (168)
274 1zd8_A GTP:AMP phosphotransfer 95.5 0.0059 2E-07 59.0 3.0 27 483-509 5-31 (227)
275 2grj_A Dephospho-COA kinase; T 95.5 0.0063 2.2E-07 57.5 3.1 24 485-508 12-35 (192)
276 2z0h_A DTMP kinase, thymidylat 95.5 0.0063 2.2E-07 57.0 3.1 23 487-509 2-24 (197)
277 2pt5_A Shikimate kinase, SK; a 95.5 0.0068 2.3E-07 55.3 3.1 22 487-508 2-23 (168)
278 1e6c_A Shikimate kinase; phosp 95.5 0.0058 2E-07 56.0 2.7 24 486-509 3-26 (173)
279 3ake_A Cytidylate kinase; CMP 95.5 0.0061 2.1E-07 57.6 2.9 23 487-509 4-26 (208)
280 1ukz_A Uridylate kinase; trans 95.4 0.0069 2.4E-07 57.2 3.1 26 484-509 14-39 (203)
281 3dl0_A Adenylate kinase; phosp 95.4 0.0068 2.3E-07 57.9 3.1 23 487-509 2-24 (216)
282 1qf9_A UMP/CMP kinase, protein 95.4 0.0058 2E-07 56.9 2.4 26 484-509 5-30 (194)
283 1z0j_A RAB-22, RAS-related pro 95.4 0.01 3.5E-07 53.5 4.0 23 487-509 8-30 (170)
284 3tlx_A Adenylate kinase 2; str 95.4 0.0077 2.6E-07 59.0 3.3 27 483-509 27-53 (243)
285 1z2a_A RAS-related protein RAB 95.4 0.0071 2.4E-07 54.5 2.9 22 487-508 7-28 (168)
286 1a7j_A Phosphoribulokinase; tr 95.4 0.0039 1.3E-07 63.0 1.1 26 484-509 4-29 (290)
287 1zak_A Adenylate kinase; ATP:A 95.4 0.0061 2.1E-07 58.6 2.4 26 484-509 4-29 (222)
288 3q72_A GTP-binding protein RAD 95.3 0.0067 2.3E-07 54.7 2.6 23 487-509 4-26 (166)
289 3lxw_A GTPase IMAP family memb 95.3 0.0078 2.7E-07 59.2 3.2 24 486-509 22-45 (247)
290 2pbr_A DTMP kinase, thymidylat 95.3 0.008 2.7E-07 56.0 3.1 23 487-509 2-24 (195)
291 3a8t_A Adenylate isopentenyltr 95.3 0.0095 3.3E-07 61.1 3.8 28 483-510 38-65 (339)
292 2ew1_A RAS-related protein RAB 95.3 0.014 4.8E-07 55.2 4.8 21 487-507 28-48 (201)
293 2nzj_A GTP-binding protein REM 95.3 0.0089 3E-07 54.4 3.2 23 487-509 6-28 (175)
294 1ksh_A ARF-like protein 2; sma 95.3 0.018 6.1E-07 53.2 5.3 32 483-514 16-51 (186)
295 2fn4_A P23, RAS-related protei 95.3 0.01 3.4E-07 54.3 3.6 22 487-508 11-32 (181)
296 1uj2_A Uridine-cytidine kinase 95.3 0.0082 2.8E-07 59.1 3.1 23 486-508 23-45 (252)
297 3q85_A GTP-binding protein REM 95.3 0.0091 3.1E-07 54.0 3.2 23 487-509 4-26 (169)
298 1kao_A RAP2A; GTP-binding prot 95.2 0.0087 3E-07 53.7 2.9 21 487-507 5-25 (167)
299 4ad8_A DNA repair protein RECN 95.2 0.005 1.7E-07 67.5 1.4 24 594-617 395-421 (517)
300 2dby_A GTP-binding protein; GD 95.2 0.0056 1.9E-07 63.9 1.7 22 487-508 3-24 (368)
301 2dyk_A GTP-binding protein; GT 95.2 0.0092 3.2E-07 53.4 2.9 23 487-509 3-25 (161)
302 2oil_A CATX-8, RAS-related pro 95.2 0.012 4.1E-07 54.8 3.8 21 487-507 27-47 (193)
303 3k53_A Ferrous iron transport 95.2 0.0083 2.8E-07 59.7 2.8 23 487-509 5-27 (271)
304 3clv_A RAB5 protein, putative; 95.2 0.012 4.2E-07 54.7 3.9 23 486-508 8-30 (208)
305 1u8z_A RAS-related protein RAL 95.2 0.0091 3.1E-07 53.6 2.9 21 487-507 6-26 (168)
306 2ged_A SR-beta, signal recogni 95.2 0.009 3.1E-07 55.6 2.9 26 484-509 47-72 (193)
307 3t5d_A Septin-7; GTP-binding p 95.2 0.008 2.7E-07 60.0 2.7 22 487-508 10-31 (274)
308 3a4m_A L-seryl-tRNA(SEC) kinas 95.1 0.01 3.5E-07 58.7 3.4 26 483-508 2-27 (260)
309 1c1y_A RAS-related protein RAP 95.1 0.0095 3.3E-07 53.6 2.9 21 487-507 5-25 (167)
310 2ce2_X GTPase HRAS; signaling 95.1 0.0084 2.9E-07 53.7 2.5 22 487-508 5-26 (166)
311 2qmh_A HPR kinase/phosphorylas 95.1 0.014 4.8E-07 55.1 4.0 35 473-508 23-57 (205)
312 1z08_A RAS-related protein RAB 95.1 0.0097 3.3E-07 53.8 2.9 22 487-508 8-29 (170)
313 3t1o_A Gliding protein MGLA; G 95.1 0.01 3.6E-07 55.0 3.1 25 487-511 16-40 (198)
314 3tw8_B RAS-related protein RAB 95.1 0.01 3.6E-07 54.1 3.0 22 487-508 11-32 (181)
315 1ek0_A Protein (GTP-binding pr 95.1 0.01 3.4E-07 53.5 2.9 21 487-507 5-25 (170)
316 1v5w_A DMC1, meiotic recombina 95.1 0.012 4.1E-07 60.9 3.7 42 481-522 118-166 (343)
317 1ky3_A GTP-binding protein YPT 95.0 0.01 3.5E-07 54.2 2.9 22 487-508 10-31 (182)
318 2ce7_A Cell division protein F 95.0 0.0051 1.7E-07 66.5 0.9 35 473-509 39-73 (476)
319 1wms_A RAB-9, RAB9, RAS-relate 95.0 0.011 3.6E-07 54.0 2.9 21 487-507 9-29 (177)
320 1g16_A RAS-related protein SEC 95.0 0.0092 3.2E-07 53.9 2.5 22 487-508 5-26 (170)
321 3llm_A ATP-dependent RNA helic 95.0 0.0082 2.8E-07 58.4 2.2 25 482-506 73-97 (235)
322 2f6r_A COA synthase, bifunctio 95.0 0.0098 3.4E-07 59.7 2.8 23 485-507 75-97 (281)
323 2bcg_Y Protein YP2, GTP-bindin 95.0 0.02 6.7E-07 53.9 4.7 21 487-507 10-30 (206)
324 1r2q_A RAS-related protein RAB 95.0 0.011 3.8E-07 53.2 2.9 21 487-507 8-28 (170)
325 1svi_A GTP-binding protein YSX 95.0 0.01 3.5E-07 55.2 2.6 24 485-508 23-46 (195)
326 3be4_A Adenylate kinase; malar 94.9 0.011 3.7E-07 56.7 2.8 26 484-509 4-29 (217)
327 3b1v_A Ferrous iron uptake tra 94.9 0.012 4.2E-07 58.7 3.2 24 486-509 4-27 (272)
328 1m7b_A RND3/RHOE small GTP-bin 94.9 0.013 4.4E-07 54.2 3.2 22 487-508 9-30 (184)
329 3pqc_A Probable GTP-binding pr 94.9 0.011 3.7E-07 54.9 2.6 24 486-509 24-47 (195)
330 4fcw_A Chaperone protein CLPB; 94.9 0.0085 2.9E-07 60.5 2.0 36 485-520 47-83 (311)
331 4dsu_A GTPase KRAS, isoform 2B 94.9 0.012 4.2E-07 54.2 2.9 22 487-508 6-27 (189)
332 3kkq_A RAS-related protein M-R 94.8 0.025 8.6E-07 51.9 4.9 21 487-507 20-40 (183)
333 2hxs_A RAB-26, RAS-related pro 94.8 0.014 4.9E-07 53.2 3.2 22 487-508 8-29 (178)
334 3bc1_A RAS-related protein RAB 94.8 0.013 4.3E-07 54.2 2.9 21 487-507 13-33 (195)
335 1r8s_A ADP-ribosylation factor 94.8 0.013 4.5E-07 52.6 2.9 21 487-507 2-22 (164)
336 2cxx_A Probable GTP-binding pr 94.8 0.012 4.1E-07 54.3 2.6 22 487-508 3-24 (190)
337 4dhe_A Probable GTP-binding pr 94.8 0.011 3.7E-07 56.5 2.4 25 485-509 29-53 (223)
338 3t5g_A GTP-binding protein RHE 94.8 0.022 7.5E-07 52.2 4.4 29 487-515 8-41 (181)
339 3auy_A DNA double-strand break 94.7 0.016 5.6E-07 60.5 3.8 30 476-506 17-46 (371)
340 1upt_A ARL1, ADP-ribosylation 94.7 0.014 4.7E-07 52.8 2.9 31 484-514 6-40 (171)
341 4bas_A ADP-ribosylation factor 94.7 0.02 6.8E-07 53.3 4.0 30 485-514 17-52 (199)
342 2g6b_A RAS-related protein RAB 94.7 0.014 4.8E-07 53.4 2.9 21 487-507 12-32 (180)
343 1z0f_A RAB14, member RAS oncog 94.7 0.014 4.9E-07 53.1 2.9 22 487-508 17-38 (179)
344 2y8e_A RAB-protein 6, GH09086P 94.7 0.013 4.4E-07 53.4 2.5 21 487-507 16-36 (179)
345 3con_A GTPase NRAS; structural 94.6 0.015 5.1E-07 53.9 2.9 22 487-508 23-44 (190)
346 1e4v_A Adenylate kinase; trans 94.6 0.014 4.7E-07 55.8 2.7 23 487-509 2-24 (214)
347 2efe_B Small GTP-binding prote 94.6 0.015 5.2E-07 53.1 2.9 22 487-508 14-35 (181)
348 3exa_A TRNA delta(2)-isopenten 94.6 0.017 5.9E-07 58.5 3.5 25 485-509 3-27 (322)
349 2a9k_A RAS-related protein RAL 94.6 0.016 5.3E-07 53.3 2.9 21 487-507 20-40 (187)
350 2gf0_A GTP-binding protein DI- 94.6 0.023 7.9E-07 52.9 4.1 22 486-507 9-30 (199)
351 1wf3_A GTP-binding protein; GT 94.6 0.016 5.5E-07 58.7 3.2 22 487-508 9-30 (301)
352 1ak2_A Adenylate kinase isoenz 94.6 0.019 6.4E-07 55.7 3.5 26 484-509 15-40 (233)
353 3iby_A Ferrous iron transport 94.6 0.015 5.2E-07 57.5 2.8 23 487-509 3-25 (256)
354 2h92_A Cytidylate kinase; ross 94.5 0.012 4.2E-07 56.2 2.1 25 485-509 3-27 (219)
355 2xb4_A Adenylate kinase; ATP-b 94.5 0.017 6E-07 55.6 3.1 23 487-509 2-24 (223)
356 2xtp_A GTPase IMAP family memb 94.5 0.016 5.3E-07 57.1 2.8 24 486-509 23-46 (260)
357 3bos_A Putative DNA replicatio 94.5 0.013 4.4E-07 56.4 2.1 26 484-509 51-76 (242)
358 2gf9_A RAS-related protein RAB 94.5 0.017 5.8E-07 53.5 2.9 22 487-508 24-45 (189)
359 1vg8_A RAS-related protein RAB 94.5 0.017 5.9E-07 54.2 2.9 23 486-508 9-31 (207)
360 1moz_A ARL1, ADP-ribosylation 94.5 0.012 4.2E-07 54.0 1.8 24 484-507 17-40 (183)
361 3n70_A Transport activator; si 94.5 0.02 6.9E-07 51.1 3.2 38 483-520 22-59 (145)
362 3d3q_A TRNA delta(2)-isopenten 94.4 0.018 6.1E-07 59.2 3.1 25 486-510 8-32 (340)
363 2w58_A DNAI, primosome compone 94.4 0.017 5.9E-07 54.4 2.8 31 486-516 55-85 (202)
364 2bme_A RAB4A, RAS-related prot 94.4 0.016 5.4E-07 53.3 2.5 21 487-507 12-32 (186)
365 2bov_A RAla, RAS-related prote 94.4 0.018 6.1E-07 54.0 2.9 29 487-515 16-49 (206)
366 2il1_A RAB12; G-protein, GDP, 94.4 0.019 6.4E-07 53.6 3.0 22 487-508 28-49 (192)
367 1z06_A RAS-related protein RAB 94.4 0.019 6.3E-07 53.3 2.9 21 487-507 22-42 (189)
368 2cjw_A GTP-binding protein GEM 94.4 0.018 6.2E-07 53.8 2.9 21 487-507 8-28 (192)
369 1zbd_A Rabphilin-3A; G protein 94.4 0.02 6.9E-07 53.6 3.2 22 487-508 10-31 (203)
370 1gwn_A RHO-related GTP-binding 94.4 0.024 8.1E-07 53.8 3.6 22 487-508 30-51 (205)
371 2qu8_A Putative nucleolar GTP- 94.4 0.02 6.8E-07 55.1 3.1 23 486-508 30-52 (228)
372 2fg5_A RAB-22B, RAS-related pr 94.3 0.017 5.8E-07 53.8 2.5 28 487-514 25-57 (192)
373 3v9p_A DTMP kinase, thymidylat 94.3 0.017 5.9E-07 56.0 2.6 27 483-509 23-49 (227)
374 3llu_A RAS-related GTP-binding 94.3 0.02 6.9E-07 53.5 3.0 23 487-509 22-44 (196)
375 4edh_A DTMP kinase, thymidylat 94.3 0.022 7.5E-07 54.7 3.3 28 483-510 4-31 (213)
376 3tqf_A HPR(Ser) kinase; transf 94.3 0.03 1E-06 51.6 3.9 33 474-507 6-38 (181)
377 1mh1_A RAC1; GTP-binding, GTPa 94.3 0.02 6.8E-07 52.5 2.9 21 487-507 7-27 (186)
378 1nrj_B SR-beta, signal recogni 94.3 0.02 6.7E-07 54.5 2.9 24 486-509 13-36 (218)
379 3iev_A GTP-binding protein ERA 94.3 0.021 7.1E-07 58.1 3.2 23 486-508 11-33 (308)
380 3oes_A GTPase rhebl1; small GT 94.3 0.018 6.1E-07 54.1 2.5 24 485-508 24-47 (201)
381 3b5x_A Lipid A export ATP-bind 94.3 7.9 0.00027 42.5 39.4 13 459-471 357-369 (582)
382 3i8s_A Ferrous iron transport 94.2 0.02 6.7E-07 57.2 2.9 24 486-509 4-27 (274)
383 3tkl_A RAS-related protein RAB 94.2 0.027 9.1E-07 52.3 3.6 22 487-508 18-39 (196)
384 2a5j_A RAS-related protein RAB 94.2 0.021 7.2E-07 53.0 2.9 22 487-508 23-44 (191)
385 2iwr_A Centaurin gamma 1; ANK 94.2 0.02 6.8E-07 52.3 2.6 22 486-507 8-29 (178)
386 3dz8_A RAS-related protein RAB 94.2 0.019 6.5E-07 53.3 2.5 22 487-508 25-46 (191)
387 2h57_A ADP-ribosylation factor 94.2 0.018 6.3E-07 53.4 2.4 24 486-509 22-45 (190)
388 3ld9_A DTMP kinase, thymidylat 94.2 0.025 8.5E-07 54.7 3.3 28 483-510 19-46 (223)
389 1ypw_A Transitional endoplasmi 94.2 0.0021 7.3E-08 74.3 -5.1 46 478-525 504-549 (806)
390 3a1s_A Iron(II) transport prot 94.2 0.024 8.1E-07 56.1 3.2 23 487-509 7-29 (258)
391 3zvl_A Bifunctional polynucleo 94.2 0.024 8.2E-07 60.2 3.5 37 482-522 255-291 (416)
392 1w1w_A Structural maintenance 94.1 0.021 7.1E-07 60.9 3.0 25 593-617 331-359 (430)
393 2o52_A RAS-related protein RAB 94.1 0.022 7.4E-07 53.6 2.8 22 487-508 27-48 (200)
394 3crm_A TRNA delta(2)-isopenten 94.1 0.025 8.4E-07 57.8 3.3 25 486-510 6-30 (323)
395 3bwd_D RAC-like GTP-binding pr 94.1 0.026 8.8E-07 51.6 3.2 24 484-507 7-30 (182)
396 1jbk_A CLPB protein; beta barr 94.1 0.027 9.4E-07 51.6 3.4 27 483-509 41-67 (195)
397 2atv_A RERG, RAS-like estrogen 94.1 0.023 8E-07 53.0 2.9 31 485-515 28-63 (196)
398 1sky_E F1-ATPase, F1-ATP synth 94.1 0.011 3.9E-07 63.2 0.8 44 474-518 141-184 (473)
399 3reg_A RHO-like small GTPase; 94.1 0.023 7.9E-07 52.9 2.9 22 487-508 25-46 (194)
400 1zj6_A ADP-ribosylation factor 94.1 0.023 7.8E-07 52.6 2.8 24 484-507 15-38 (187)
401 1zd9_A ADP-ribosylation factor 94.1 0.023 7.9E-07 52.7 2.9 22 486-507 23-44 (188)
402 2fv8_A H6, RHO-related GTP-bin 94.1 0.021 7.2E-07 53.9 2.5 23 486-508 26-48 (207)
403 3cph_A RAS-related protein SEC 94.1 0.023 8E-07 53.5 2.9 23 485-507 20-42 (213)
404 1ltq_A Polynucleotide kinase; 94.1 0.024 8.2E-07 57.1 3.1 22 486-507 3-24 (301)
405 2p5s_A RAS and EF-hand domain 94.1 0.024 8.1E-07 53.1 2.9 25 484-508 27-51 (199)
406 3lv8_A DTMP kinase, thymidylat 94.0 0.025 8.4E-07 55.2 3.0 27 484-510 26-52 (236)
407 1x3s_A RAS-related protein RAB 94.0 0.024 8.1E-07 52.5 2.9 23 486-508 16-38 (195)
408 3b9p_A CG5977-PA, isoform A; A 94.0 0.025 8.5E-07 56.8 3.2 27 483-509 52-78 (297)
409 2h17_A ADP-ribosylation factor 94.0 0.02 7E-07 52.6 2.3 22 486-507 22-43 (181)
410 3def_A T7I23.11 protein; chlor 94.0 0.023 7.9E-07 56.2 2.9 23 487-509 38-60 (262)
411 1p5z_B DCK, deoxycytidine kina 94.0 0.018 6.2E-07 56.9 2.1 28 482-509 21-48 (263)
412 2f7s_A C25KG, RAS-related prot 94.0 0.027 9.3E-07 53.4 3.3 22 487-508 27-48 (217)
413 3cnl_A YLQF, putative uncharac 94.0 0.026 8.9E-07 56.0 3.2 30 486-515 100-129 (262)
414 3foz_A TRNA delta(2)-isopenten 94.0 0.028 9.4E-07 56.9 3.3 25 485-509 10-34 (316)
415 2ocp_A DGK, deoxyguanosine kin 94.0 0.025 8.5E-07 55.1 3.0 26 484-509 1-26 (241)
416 4tmk_A Protein (thymidylate ki 94.0 0.027 9.1E-07 54.1 3.1 27 484-510 2-28 (213)
417 1fnn_A CDC6P, cell division co 94.0 0.022 7.4E-07 59.3 2.7 38 483-520 40-81 (389)
418 1h65_A Chloroplast outer envel 94.0 0.024 8.1E-07 56.3 2.8 23 487-509 41-63 (270)
419 2q3h_A RAS homolog gene family 94.0 0.028 9.6E-07 52.5 3.2 25 484-508 19-43 (201)
420 2j1l_A RHO-related GTP-binding 93.9 0.025 8.6E-07 53.8 2.9 21 487-507 36-56 (214)
421 3c5c_A RAS-like protein 12; GD 93.9 0.026 9E-07 52.3 2.9 29 487-515 23-56 (187)
422 1jwy_B Dynamin A GTPase domain 93.9 0.024 8.2E-07 57.4 2.8 23 487-509 26-48 (315)
423 3tmk_A Thymidylate kinase; pho 93.9 0.029 9.8E-07 54.0 3.1 29 483-511 3-31 (216)
424 2fh5_B SR-beta, signal recogni 93.8 0.027 9.2E-07 53.3 2.9 23 485-507 7-29 (214)
425 3b60_A Lipid A export ATP-bind 93.8 9.4 0.00032 41.9 35.8 13 459-471 357-369 (582)
426 2fu5_C RAS-related protein RAB 93.8 0.019 6.6E-07 52.7 1.7 22 487-508 10-31 (183)
427 2e87_A Hypothetical protein PH 93.8 0.029 1E-06 58.2 3.2 25 485-509 167-191 (357)
428 2aka_B Dynamin-1; fusion prote 93.8 0.025 8.4E-07 56.8 2.6 23 487-509 28-50 (299)
429 3r7w_A Gtpase1, GTP-binding pr 93.8 0.033 1.1E-06 56.6 3.5 27 483-509 1-27 (307)
430 2g3y_A GTP-binding protein GEM 93.8 0.032 1.1E-06 53.3 3.2 23 486-508 38-60 (211)
431 3umf_A Adenylate kinase; rossm 93.8 0.026 8.9E-07 54.3 2.6 29 481-509 25-53 (217)
432 2p65_A Hypothetical protein PF 93.7 0.033 1.1E-06 51.0 3.2 28 483-510 41-68 (187)
433 2wsm_A Hydrogenase expression/ 93.7 0.026 8.8E-07 53.8 2.5 23 486-508 31-53 (221)
434 2gco_A H9, RHO-related GTP-bin 93.7 0.026 8.9E-07 53.0 2.5 21 487-507 27-47 (201)
435 4gzl_A RAS-related C3 botulinu 93.7 0.042 1.4E-06 51.8 3.9 24 484-507 29-52 (204)
436 2b6h_A ADP-ribosylation factor 93.7 0.028 9.5E-07 52.5 2.6 25 483-507 27-51 (192)
437 3l0o_A Transcription terminati 93.7 0.014 4.7E-07 60.8 0.5 52 458-509 137-199 (427)
438 4djt_A GTP-binding nuclear pro 93.6 0.018 6E-07 54.8 1.0 21 487-507 13-33 (218)
439 2qby_A CDC6 homolog 1, cell di 93.6 0.016 5.5E-07 60.0 0.8 38 483-520 43-84 (386)
440 4dcu_A GTP-binding protein ENG 93.6 0.028 9.6E-07 60.4 2.7 23 486-508 24-46 (456)
441 3h4m_A Proteasome-activating n 93.5 0.035 1.2E-06 55.3 3.1 28 482-509 48-75 (285)
442 2atx_A Small GTP binding prote 93.5 0.031 1.1E-06 51.9 2.5 22 487-508 20-41 (194)
443 3eph_A TRNA isopentenyltransfe 93.4 0.034 1.2E-06 58.3 3.0 25 485-509 2-26 (409)
444 2x77_A ADP-ribosylation factor 93.4 0.026 9E-07 52.2 1.8 24 484-507 21-44 (189)
445 1l8q_A Chromosomal replication 93.3 0.021 7.3E-07 58.2 1.1 26 484-509 36-61 (324)
446 2zts_A Putative uncharacterize 93.2 0.052 1.8E-06 52.5 3.9 24 482-505 27-50 (251)
447 3bh0_A DNAB-like replicative h 93.2 0.026 8.9E-07 57.5 1.7 35 473-507 56-90 (315)
448 3auy_A DNA double-strand break 93.2 0.034 1.2E-06 58.0 2.5 24 594-617 279-309 (371)
449 2hf9_A Probable hydrogenase ni 93.2 0.036 1.2E-06 53.0 2.5 23 486-508 39-61 (226)
450 2hup_A RAS-related protein RAB 93.1 0.038 1.3E-06 52.0 2.5 21 487-507 31-51 (201)
451 3cpj_B GTP-binding protein YPT 93.1 0.043 1.5E-06 52.5 2.9 22 487-508 15-36 (223)
452 2qz4_A Paraplegin; AAA+, SPG7, 93.1 0.045 1.5E-06 53.5 3.2 27 482-508 36-62 (262)
453 2yc2_C IFT27, small RAB-relate 93.1 0.022 7.4E-07 53.4 0.8 23 486-508 21-43 (208)
454 2i1q_A DNA repair and recombin 93.0 0.047 1.6E-06 55.6 3.3 27 481-507 94-120 (322)
455 3q3j_B RHO-related GTP-binding 93.0 0.045 1.5E-06 52.1 2.9 24 485-508 27-50 (214)
456 1u94_A RECA protein, recombina 92.9 0.039 1.3E-06 57.3 2.4 39 482-520 60-99 (356)
457 2r62_A Cell division protease 92.9 0.015 5.2E-07 57.4 -0.7 29 477-507 38-66 (268)
458 1g8f_A Sulfate adenylyltransfe 92.9 0.043 1.5E-06 59.6 2.8 29 483-511 393-421 (511)
459 1puj_A YLQF, conserved hypothe 92.8 0.058 2E-06 54.0 3.5 30 485-514 120-149 (282)
460 3ec1_A YQEH GTPase; atnos1, at 92.7 0.046 1.6E-06 57.0 2.7 25 484-508 161-185 (369)
461 2j0v_A RAC-like GTP-binding pr 92.5 0.05 1.7E-06 51.3 2.5 22 486-507 10-31 (212)
462 3sr0_A Adenylate kinase; phosp 92.4 0.066 2.3E-06 51.0 3.1 23 487-509 2-24 (206)
463 1njg_A DNA polymerase III subu 92.3 0.068 2.3E-06 50.8 3.2 23 487-509 47-69 (250)
464 4hlc_A DTMP kinase, thymidylat 92.3 0.071 2.4E-06 50.7 3.2 26 485-510 2-27 (205)
465 1m8p_A Sulfate adenylyltransfe 92.3 0.062 2.1E-06 59.4 3.1 37 483-520 394-433 (573)
466 3h2y_A GTPase family protein; 92.3 0.047 1.6E-06 57.0 2.0 25 484-508 159-183 (368)
467 1x6v_B Bifunctional 3'-phospho 92.1 0.07 2.4E-06 59.3 3.3 26 484-509 51-76 (630)
468 2hjg_A GTP-binding protein ENG 92.0 0.062 2.1E-06 57.3 2.7 22 487-508 5-26 (436)
469 1mky_A Probable GTP-binding pr 92.0 0.1 3.4E-06 55.8 4.3 22 487-508 3-24 (439)
470 2x2e_A Dynamin-1; nitration, h 91.9 0.054 1.9E-06 56.1 2.1 23 487-509 33-55 (353)
471 3gj0_A GTP-binding nuclear pro 91.9 0.044 1.5E-06 52.2 1.2 28 487-514 17-49 (221)
472 3th5_A RAS-related C3 botulinu 91.1 0.03 1E-06 52.6 0.0 24 484-507 29-52 (204)
473 2vhj_A Ntpase P4, P4; non- hyd 91.8 0.085 2.9E-06 53.7 3.3 28 480-507 118-145 (331)
474 4dkx_A RAS-related protein RAB 91.8 0.082 2.8E-06 50.7 3.1 28 487-514 15-47 (216)
475 3dm5_A SRP54, signal recogniti 91.8 0.068 2.3E-06 56.9 2.7 35 484-518 99-133 (443)
476 1xzp_A Probable tRNA modificat 91.8 0.042 1.4E-06 59.5 1.1 39 485-523 243-293 (482)
477 3geh_A MNME, tRNA modification 91.8 0.054 1.9E-06 58.2 1.9 45 484-528 223-279 (462)
478 3syl_A Protein CBBX; photosynt 91.8 0.075 2.6E-06 53.4 2.9 26 484-509 66-91 (309)
479 1tue_A Replication protein E1; 91.8 0.067 2.3E-06 50.8 2.3 28 482-509 55-82 (212)
480 4i1u_A Dephospho-COA kinase; s 91.7 0.081 2.8E-06 50.5 2.9 21 487-507 11-31 (210)
481 2v3c_C SRP54, signal recogniti 91.7 0.02 6.9E-07 61.1 -1.6 37 486-522 100-136 (432)
482 1wxq_A GTP-binding protein; st 91.6 0.078 2.7E-06 55.9 2.9 23 487-509 2-24 (397)
483 1xwi_A SKD1 protein; VPS4B, AA 91.5 0.087 3E-06 53.8 3.1 28 482-509 42-69 (322)
484 3uk6_A RUVB-like 2; hexameric 91.5 0.078 2.7E-06 54.8 2.7 40 483-522 68-107 (368)
485 3l0i_B RAS-related protein RAB 91.5 0.021 7.4E-07 53.4 -1.5 22 487-508 35-56 (199)
486 1sxj_D Activator 1 41 kDa subu 91.5 0.036 1.2E-06 56.8 0.1 37 473-509 44-82 (353)
487 4a9a_A Ribosome-interacting GT 91.5 0.094 3.2E-06 54.7 3.2 38 487-524 74-122 (376)
488 1lnz_A SPO0B-associated GTP-bi 91.4 0.1 3.6E-06 53.7 3.5 45 476-520 149-204 (342)
489 3hws_A ATP-dependent CLP prote 91.4 0.08 2.7E-06 54.9 2.7 26 484-509 50-75 (363)
490 3gmt_A Adenylate kinase; ssgci 91.4 0.099 3.4E-06 50.6 3.1 24 486-509 9-32 (230)
491 3fdi_A Uncharacterized protein 91.4 0.097 3.3E-06 49.5 3.0 25 485-509 6-30 (201)
492 2orw_A Thymidine kinase; TMTK, 91.3 0.069 2.4E-06 49.8 1.9 25 484-508 2-27 (184)
493 1d2n_A N-ethylmaleimide-sensit 91.1 0.097 3.3E-06 51.7 2.8 26 483-508 62-87 (272)
494 2chg_A Replication factor C sm 91.0 0.1 3.6E-06 48.9 2.9 22 487-508 40-61 (226)
495 3co5_A Putative two-component 91.0 0.059 2E-06 47.9 1.0 28 483-510 25-52 (143)
496 2bjv_A PSP operon transcriptio 90.9 0.15 5.3E-06 50.0 4.1 36 484-519 28-64 (265)
497 2j69_A Bacterial dynamin-like 90.9 0.1 3.6E-06 59.0 3.2 28 482-509 66-93 (695)
498 2xau_A PRE-mRNA-splicing facto 90.8 0.058 2E-06 62.0 0.9 31 482-512 106-136 (773)
499 2hjg_A GTP-binding protein ENG 90.7 0.12 4E-06 55.2 3.2 44 486-529 176-231 (436)
500 3eie_A Vacuolar protein sortin 90.7 0.12 4.2E-06 52.5 3.2 26 483-508 49-74 (322)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1e-75 Score=711.07 Aligned_cols=425 Identities=25% Similarity=0.350 Sum_probs=370.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 192 ASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVS 271 (617)
Q Consensus 192 ~~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 271 (617)
..++.+++.+++.+++.++..++|.++|+|++++|++||+++++|++.+++++|.+.++..+...+..++..++.++. .
T Consensus 149 ~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~-~ 227 (1321)
T 4f4c_A 149 MWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFIT-G 227 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 356778888999999999999999999999999999999999999999999988888876654444445554444333 2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHHH
Q 007122 272 GILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRR 351 (617)
Q Consensus 272 ~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~ 351 (617)
.++++.++|.+++++++++++++++...+.+...+..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++
T Consensus 228 ~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 307 (1321)
T 4f4c_A 228 FIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEE 307 (1321)
T ss_dssp HHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHH
Confidence 34455678888888777777777777777777777777777888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 352 YEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMK 431 (617)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~~ 431 (617)
..+...+.............++.....+.++++|++++.+|.+|+|+++++..++..+..|+..++..+..++++.++++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ 387 (1321)
T 4f4c_A 308 AKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAAS 387 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877776666555555555555666777888999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccccCCCCC-CCCCCCCcceEEEeEEEeecC--CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcC
Q 007122 432 SMFQLLEEKADIQDRDNA-MPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 432 ri~~~l~~~~~~~~~~~~-~~~~~~~~~I~~~nvsF~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
|+.++++.+++.++.... .......++|+|+||+|+||+ ++++|+|+||+|+|||++|||||||||||||+++|+|+
T Consensus 388 ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 388 GIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp HHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred HHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccc
Confidence 999999887654432221 112223468999999999984 56999999999999999999999999999999999999
Q ss_pred CCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCcccc
Q 007122 509 FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTV 588 (617)
Q Consensus 509 ~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~ 588 (617)
|+|++|+|.+||+|+++++.+++|++|+||||||+||+|||||||+||+|++++|++++||+.|++++||++||+||||+
T Consensus 468 ~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~ 547 (1321)
T 4f4c_A 468 YDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTL 547 (1321)
T ss_dssp SCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSE
T ss_pred cccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 589 VGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 589 vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
|||+|.+||||||||||||||+|+||+||
T Consensus 548 vGe~G~~LSGGQkQRiaiARAl~~~~~Il 576 (1321)
T 4f4c_A 548 VGDRGTQLSGGQKQRIAIARALVRNPKIL 576 (1321)
T ss_dssp ESSSSCCCCHHHHHHHHHHHHHTTCCSEE
T ss_pred ecCCCCCCCHHHHHHHHHHHHHccCCCEE
Confidence 99999999999999999999999999985
No 2
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.6e-72 Score=631.13 Aligned_cols=497 Identities=28% Similarity=0.412 Sum_probs=402.2
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 007122 108 FRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGI 187 (617)
Q Consensus 108 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 187 (617)
+++++++++ ++++.++.++++.++..++.+..|++++.++|.+........ . ..+.......+..++++.
T Consensus 2 ~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~- 71 (578)
T 4a82_A 2 IKRYLQFVK-----PYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTT-D---EKVHHLTIAIGIALFIFV- 71 (578)
T ss_dssp HHHHHHHHG-----GGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCH-H---HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh-h---HHHHHHHHHHHHHHHHHH-
Confidence 456667765 446777777777777888899999999999998754221000 0 001000000111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 007122 188 ARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEI 267 (617)
Q Consensus 188 ~~~~~~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 267 (617)
++..++.+++.++..+++.++..++|.++|+|++++|+.||+++++|++.+++++|.+.++......+..++..++.+
T Consensus 72 --~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~ 149 (578)
T 4a82_A 72 --IVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITI 149 (578)
T ss_dssp --HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233456778888899999999999999999999999999999999999999998888777665443233333333333
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHH
Q 007122 268 SMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDE 347 (617)
Q Consensus 268 ~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~ 347 (617)
++. .++++.++|.++++.++++++++++...+.+...+..++..+..++..+.+.|.++|+++||+|++|+.+.++|++
T Consensus 150 i~~-~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~ 228 (578)
T 4a82_A 150 IIA-LSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDK 228 (578)
T ss_dssp HHH-HHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHH
Confidence 222 2344556777777776666666666666666666666777778888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 348 FLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSL 427 (617)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~ 427 (617)
..+++.+...+..++..........+.....+.+++++++.+.+|.+|+|+++++..++..+..|+..+...+..++++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 308 (578)
T 4a82_A 229 KNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSF 308 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888877766666655555555556666778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccCCCCCCCCCCCCcceEEEeEEEeecC-CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHh
Q 007122 428 VDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (617)
Q Consensus 428 ~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~nvsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~ 506 (617)
.+++|+.++++.+++..+.....+.+...+.|+++||+|+|++ ++++|+|+||+|++||++|||||||||||||+++|+
T Consensus 309 ~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~ 388 (578)
T 4a82_A 309 ASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP 388 (578)
T ss_dssp HHHHHHHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTT
T ss_pred HHHHHHHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHh
Confidence 9999999999877654332222222233468999999999985 568999999999999999999999999999999999
Q ss_pred cCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCcc
Q 007122 507 RSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYS 586 (617)
Q Consensus 507 gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~Gld 586 (617)
|+|+|++|+|.+||+|+++++.+++|++++||||||++|++||+|||.+|+++.++++++++++.++++++++++|+|+|
T Consensus 389 g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~ 468 (578)
T 4a82_A 389 RFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYD 468 (578)
T ss_dssp TSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGG
T ss_pred cCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhh
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 587 TVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 587 T~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
|.+||+|.+||||||||++||||+++||+||
T Consensus 469 t~~~~~g~~LSgGq~Qrv~lAral~~~p~il 499 (578)
T 4a82_A 469 TEVGERGVKLSGGQKQRLSIARIFLNNPPIL 499 (578)
T ss_dssp CBCCGGGTTSCHHHHHHHHHHHHHHHCCSEE
T ss_pred hhhccCCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999999999999999999999999985
No 3
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.4e-72 Score=630.54 Aligned_cols=488 Identities=25% Similarity=0.375 Sum_probs=396.4
Q ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007122 110 TLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIAR 189 (617)
Q Consensus 110 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~ 189 (617)
.++++++ ++++.+++++++.++..++.+..|++++.++|.+.... +.. .+.... ..+++..
T Consensus 13 ~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~-~~~------~~~~~~----~~~~~~~--- 73 (587)
T 3qf4_A 13 TLARYLK-----PYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARG-DFS------LVLKTG----ILMLIVA--- 73 (587)
T ss_dssp CGGGGTG-----GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT-CHH------HHHHHH----HHHHHHH---
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CHH------HHHHHH----HHHHHHH---
Confidence 3455554 34666777777888888999999999999999864321 110 111100 0111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 190 TTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISM 269 (617)
Q Consensus 190 ~~~~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 269 (617)
++..++.+++.++..+.+.++..++|.++|+|++++|..||+++++|++.+++++|.+.++.+.......++..++.++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~ 153 (587)
T 3qf4_A 74 LIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVG 153 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12235566777888899999999999999999999999999999999999999888888777655444444443333222
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHH
Q 007122 270 VSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFL 349 (617)
Q Consensus 270 ~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~ 349 (617)
..++++.++|.+++++++++++++++...+.+...+..++..+..++..+.+.|.++|+++||+|++|+.+.++|.+..
T Consensus 154 -~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~ 232 (587)
T 3qf4_A 154 -GIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKAN 232 (587)
T ss_dssp -HHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHH
Confidence 2234455677777777666666666666666666666677777888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 350 RRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVD 429 (617)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~ 429 (617)
+++.+...+..+...........+.....+.++++|++.+.+|.+|+|+++++..++..+..|+..++..+..++++.++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s 312 (587)
T 3qf4_A 233 ESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASAS 312 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888887777666555555444444555666677888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccCCCCCCCCCCCCcceEEEeEEEeecC-CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcC
Q 007122 430 MKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 430 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~nvsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
++|+.++++.+++.++.....+.+...+.|+++||+|+|++ ++++|+|+||+|++||++|||||||||||||+++|+|+
T Consensus 313 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 313 AKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp HHHHHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred HHHHHHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 99999999876654332222122223468999999999974 56899999999999999999999999999999999999
Q ss_pred CCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCcccc
Q 007122 509 FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTV 588 (617)
Q Consensus 509 ~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~ 588 (617)
|+|++|+|.+||+|+++++.+++|++|+||||||++|++||+|||.+++++.++++++++++.++++++++++|+|+||.
T Consensus 393 ~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~ 472 (587)
T 3qf4_A 393 IDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSR 472 (587)
T ss_dssp SCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCE
T ss_pred ccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhH
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 589 VGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 589 vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
+||+|.+||||||||++||||+++||+||
T Consensus 473 ~~~~~~~LSgGqrQrv~lARal~~~p~il 501 (587)
T 3qf4_A 473 VERGGRNFSGGQKQRLSIARALVKKPKVL 501 (587)
T ss_dssp ECSSSCSSCHHHHHHHHHHHHHHTCCSEE
T ss_pred hcCCCCCcCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999985
No 4
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4.2e-72 Score=631.49 Aligned_cols=492 Identities=26% Similarity=0.392 Sum_probs=401.5
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHH
Q 007122 105 MKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIG 184 (617)
Q Consensus 105 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (617)
...++.++++++ ++++.+++++++.++..++.+..|++++.++|.+..... . ..+.... ..+++
T Consensus 22 ~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~-~------~~~~~~~----~~~~~ 85 (598)
T 3qf4_B 22 TATLRRLLGYLR-----PHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR-F------DLLPRYM----LILGT 85 (598)
T ss_dssp HHHHHHHGGGTG-----GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC-G------GGHHHHH----HHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-H------HHHHHHH----HHHHH
Confidence 344566666665 346777777788888889999999999999998753211 1 1111111 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 007122 185 YGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTI 264 (617)
Q Consensus 185 ~~i~~~~~~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 264 (617)
. .++..++.+++.++..+++.++..++|.++|+|++++|+.||+++++|++.+++++|.+.++......+..++..+
T Consensus 86 ~---~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~ 162 (598)
T 3qf4_B 86 I---YALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGI 162 (598)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1123456777888889999999999999999999999999999999999999998888877776554444444444
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHH
Q 007122 265 LEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQ 344 (617)
Q Consensus 265 ~~~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~ 344 (617)
+.++.. .++++.++|.+++++++++++++++...+.+...+..++..+..++..+.+.|.++|+++||+|++|+.+.++
T Consensus 163 ~~~i~~-~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~ 241 (598)
T 3qf4_B 163 VTLAGA-VIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEK 241 (598)
T ss_dssp HHHHHH-HHHHHHHCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHH
Confidence 433332 2344556777777666666666666666666666666667777788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 345 YDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETV 424 (617)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~ 424 (617)
|++..+++.+...+.............++.....+.+++++++.+.+|.+|+|+++++..++..+..|+..+...+..++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~ 321 (598)
T 3qf4_B 242 FDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQ 321 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888777766655555555555555556666788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccCCCCCCCCCCCCcceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHH
Q 007122 425 QSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRL 504 (617)
Q Consensus 425 ~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~L 504 (617)
++..+++|+.++++.+++.++.. ..+.+...+.|+++||+|+|++++++|+|+||+|++||++|||||||||||||+++
T Consensus 322 ~~~~s~~ri~~~l~~~~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~ 400 (598)
T 3qf4_B 322 MALASAERIFEILDLEEEKDDPD-AVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNL 400 (598)
T ss_dssp HHHHHHHHHHHHTTSCCCCCCSS-CCCCCSCCCCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCC-CCCCCCCCCeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHH
Confidence 99999999999998766533221 11222234689999999999877789999999999999999999999999999999
Q ss_pred HhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCC
Q 007122 505 LFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAK 584 (617)
Q Consensus 505 L~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~G 584 (617)
|+|+|+|++|+|.+||+|+++++.+++|++++||||||++|++||+|||.+++++.++++++++++.++++++++.+|+|
T Consensus 401 l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 480 (598)
T 3qf4_B 401 LMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEG 480 (598)
T ss_dssp HTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTG
T ss_pred HhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred ccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 585 YSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 585 ldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
+||.+||+|.+|||||||||+||||++++|+||
T Consensus 481 ~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~il 513 (598)
T 3qf4_B 481 YETVLTDNGEDLSQGQRQLLAITRAFLANPKIL 513 (598)
T ss_dssp GGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEE
T ss_pred ccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999999999999999985
No 5
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.7e-70 Score=615.64 Aligned_cols=491 Identities=26% Similarity=0.368 Sum_probs=398.7
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHH
Q 007122 105 MKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIG 184 (617)
Q Consensus 105 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (617)
.+.++.++++++ ++++.+++.+++.++..++.+..|++++.++|.+.... +. ..+..+ +..+++
T Consensus 10 ~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~------~~~~~~----~~~~~~ 73 (582)
T 3b5x_A 10 WQTFKRLWTYIR-----LYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNA-ES------NFLRIL----PFMILG 73 (582)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-ch------HHHHHH----HHHHHH
Confidence 344666666665 33556666677777788889999999999999875211 10 001000 011111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 007122 185 YGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTI 264 (617)
Q Consensus 185 ~~i~~~~~~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 264 (617)
.. ++..++.+++.++..+.+.++..++|.++|+|++++|+.||+++++|++.+++++|.+.++......+..++..+
T Consensus 74 ~~---~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~ 150 (582)
T 3b5x_A 74 LM---FVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREG 150 (582)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 123456777888888999999999999999999999999999999999999998888877776554444555544
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHH
Q 007122 265 LEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQ 344 (617)
Q Consensus 265 ~~~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~ 344 (617)
+.+++.+ ++++.++|.+++++++++++++++...+.+...+..++..+..++..+.+.|.++|+++||+|++|+.+.++
T Consensus 151 ~~~i~~~-~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~ 229 (582)
T 3b5x_A 151 ASIIGLL-TLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKR 229 (582)
T ss_pred HHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHH
Confidence 4433332 334446777777666666655555555566666666667777788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 345 YDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETV 424 (617)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~ 424 (617)
|++..+++.+...+..+..........++.....+.++++|++.+.+|.+|+|+++++..++..+..|+..+...+..++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~ 309 (582)
T 3b5x_A 230 FDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQ 309 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888877776666666555555556666778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccCCCCCCCCCCCCcceEEEeEEEeecCC-cccceeeeEEEeCCcEEEEECCCcchHHHHHH
Q 007122 425 QSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILR 503 (617)
Q Consensus 425 ~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~nvsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~ 503 (617)
++..+++|+.++++.+++.++. ..+.+...+.|+++||+|+|+++ +++|+|+||+|++||++|||||||||||||++
T Consensus 310 ~~~~a~~ri~~~l~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~ 387 (582)
T 3b5x_A 310 RGMAACQTLFGLMDLETERDNG--KYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIAN 387 (582)
T ss_pred HHHHHHHHHHHHHcCCCcCCCC--CCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHH
Confidence 9999999999999876543221 11112223579999999999853 68999999999999999999999999999999
Q ss_pred HHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCC-CCCCHHHHHHHHHHHcHHHHHHhCC
Q 007122 504 LLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGR-LSATEEEVYDAARRAAIHDTIMNFP 582 (617)
Q Consensus 504 LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~-~~~~de~i~~a~~~a~l~~~I~~lp 582 (617)
+|+|+|+|++|+|.+||+|+++++.+++|++++||||||++|++|++|||.++. ++.++++++++++.++++++++++|
T Consensus 388 ~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p 467 (582)
T 3b5x_A 388 LFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMP 467 (582)
T ss_pred HHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCc
Confidence 999999999999999999999999999999999999999999999999999997 6788999999999999999999999
Q ss_pred CCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 583 AKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 583 ~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
+|+||.+||+|.+||||||||++||||+++||+||
T Consensus 468 ~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~il 502 (582)
T 3b5x_A 468 QGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVL 502 (582)
T ss_pred ccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999999999985
No 6
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.2e-70 Score=616.35 Aligned_cols=490 Identities=27% Similarity=0.368 Sum_probs=398.7
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHH
Q 007122 106 KIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGY 185 (617)
Q Consensus 106 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (617)
+.++.++++++ ++++.+++.+++.++..++.+..|++++.++|.+... .+ . ..+..+ +..+++.
T Consensus 11 ~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~-~-----~~~~~~----~~~~~~~ 74 (582)
T 3b60_A 11 QTFRRLWPTIA-----PFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGK-TD-R-----SVLLWM----PLVVIGL 74 (582)
T ss_dssp HHHHHHHHHHG-----GGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTS-TT-H-----HHHHHS----HHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-Cc-h-----HHHHHH----HHHHHHH
Confidence 44566667665 3356666677777778888999999999999976421 11 0 001000 0111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 007122 186 GIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTIL 265 (617)
Q Consensus 186 ~i~~~~~~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ 265 (617)
. ++..++.+++.++..+.+.++..++|.++|+|++++|+.||+++++|++.+++++|.+.++......+..++..++
T Consensus 75 ~---~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~ 151 (582)
T 3b60_A 75 M---ILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGA 151 (582)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1234567778888889999999999999999999999999999999999999988888777765544455555444
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHH
Q 007122 266 EISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQY 345 (617)
Q Consensus 266 ~~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~ 345 (617)
.+++.+ ++++.++|.+++++++++++++++...+.+...+..++..+..++..+.+.|.++|+++||+|++|+.+.++|
T Consensus 152 ~~i~~~-~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~ 230 (582)
T 3b60_A 152 SIIGLF-IMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRF 230 (582)
T ss_dssp HHHHHH-HHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHH
T ss_pred HHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHH
Confidence 433333 3344567777777666666665555556666666666777777888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 346 DEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQ 425 (617)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~ 425 (617)
++..+++.+...+..+..........++.....+.++++|++.+.+|.+|+|+++++..++..+..|+..+...+..+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~ 310 (582)
T 3b60_A 231 DKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQR 310 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888777766666665555555556666788888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccCCCCCCCCCCCCcceEEEeEEEeecCC-cccceeeeEEEeCCcEEEEECCCcchHHHHHHH
Q 007122 426 SLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRL 504 (617)
Q Consensus 426 ~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~nvsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~L 504 (617)
+..+++|+.++++.+++.++. ..+.+...+.|+++||+|+|+++ +++|+|+||+|++||++|||||||||||||+++
T Consensus 311 ~~~a~~ri~~~l~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~ 388 (582)
T 3b60_A 311 GMAACQTLFAILDSEQEKDEG--KRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASL 388 (582)
T ss_dssp HHHHHHHHHHHHHSCCSCCCC--CBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCccCC--CCCCCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 999999999999876543221 11112223579999999999854 789999999999999999999999999999999
Q ss_pred HhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCC-CCCCHHHHHHHHHHHcHHHHHHhCCC
Q 007122 505 LFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGR-LSATEEEVYDAARRAAIHDTIMNFPA 583 (617)
Q Consensus 505 L~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~-~~~~de~i~~a~~~a~l~~~I~~lp~ 583 (617)
|+|+|+|++|+|.+||+|+++++.+++|++++||||||++|++|++|||.++. ++.++++++++++.++++++++++|+
T Consensus 389 l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~ 468 (582)
T 3b60_A 389 ITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDN 468 (582)
T ss_dssp HTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTT
T ss_pred HhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999987 67889999999999999999999999
Q ss_pred CccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 584 KYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 584 GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
|+||.+||+|.+||||||||++||||+++||+||
T Consensus 469 g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~il 502 (582)
T 3b60_A 469 GLDTIIGENGVLLSGGQRQRIAIARALLRDSPIL 502 (582)
T ss_dssp GGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEE
T ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 9999999999999999999999999999999985
No 7
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=6.4e-70 Score=614.09 Aligned_cols=494 Identities=27% Similarity=0.367 Sum_probs=393.6
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHH
Q 007122 107 IFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYG 186 (617)
Q Consensus 107 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (617)
.++.++++++ ++++.+++.+++.++..++.++.|++++.++|.+........ . ..+..+. ..+++.
T Consensus 6 ~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~--~--~~~~~~~----~~~~~~- 71 (595)
T 2yl4_A 6 EARKLLGLAY-----PERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDY--S--DNLTRLC----LGLSAV- 71 (595)
T ss_dssp HHHHHHHHHG-----GGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCC--H--HHHHHHH----HHHHHH-
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh--h--HHHHHHH----HHHHHH-
Confidence 3555666665 346666777777777788888999999999998753211000 0 0011110 011111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 007122 187 IARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILE 266 (617)
Q Consensus 187 i~~~~~~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 266 (617)
.++..++.+++.++..+.+.++..++|.++|+|++++|+.||+++++|++.+++++|.+.++......+..++..++.
T Consensus 72 --~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~ 149 (595)
T 2yl4_A 72 --FLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQ 149 (595)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112245567778888899999999999999999999999999999999999999888877775544434444444433
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHH
Q 007122 267 ISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYD 346 (617)
Q Consensus 267 ~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~ 346 (617)
+++.+ ++++.++|.+++++++++++++++...+.+..++..++..+..++..+.+.|.++|+++||+|++|+.+.++|+
T Consensus 150 ~i~~~-~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~ 228 (595)
T 2yl4_A 150 ASVGI-SMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYA 228 (595)
T ss_dssp HHHHH-HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHH
T ss_pred HHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHH
Confidence 33222 33445677777766666665555555566666666677777777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 347 EFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQS 426 (617)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~ 426 (617)
+..+++.+...+..+..........++.....+.++++|++.+.+|.+|+|+++++..++..+..|+..+...+..++++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~ 308 (595)
T 2yl4_A 229 SKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKG 308 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888877766665555554444455556677888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccCCCCCCCCCCCCcc-eEEEeEEEeecC--CcccceeeeEEEeCCcEEEEECCCcchHHHHHH
Q 007122 427 LVDMKSMFQLLEEKADIQDRDNAMPLNLKGGS-IQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILR 503 (617)
Q Consensus 427 ~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~-I~~~nvsF~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~ 503 (617)
..+++|+.++++.+++.++.....+.+...++ |+++||+|+|++ ++++|+|+||+|++||++|||||||||||||++
T Consensus 309 ~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~ 388 (595)
T 2yl4_A 309 LGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLS 388 (595)
T ss_dssp HHHHHHHHHHHTCCCSSCSSCSBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHH
T ss_pred HHHHHHHHHHHcCCCccCCCCCCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 99999999999876543222111111122356 999999999975 357999999999999999999999999999999
Q ss_pred HHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCC---CCHHHHHHHHHHHcHHHHHHh
Q 007122 504 LLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS---ATEEEVYDAARRAAIHDTIMN 580 (617)
Q Consensus 504 LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~---~~de~i~~a~~~a~l~~~I~~ 580 (617)
+|+|+|+|++|+|.+||+|+++++.+++|++|+||||+|++|++|++|||.++.+. .++++++++++.+++++++++
T Consensus 389 ~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 468 (595)
T 2yl4_A 389 LLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRN 468 (595)
T ss_dssp HHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHT
T ss_pred HHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999765 789999999999999999999
Q ss_pred CCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 581 FPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 581 lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
+|+|+||.+||+|.+||||||||++|||||+++|+||
T Consensus 469 l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~il 505 (595)
T 2yl4_A 469 FPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKIL 505 (595)
T ss_dssp SSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred CcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999999999999999999999999999999985
No 8
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.9e-71 Score=672.02 Aligned_cols=424 Identities=27% Similarity=0.322 Sum_probs=336.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc--cCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 193 SAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLS--RETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMV 270 (617)
Q Consensus 193 ~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~--~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 270 (617)
.++.+++.+++...+.++..++|.++|++++++|++||+. +++|++.+++++|.+.++..+...+..++..++.++..
T Consensus 808 ~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ 887 (1321)
T 4f4c_A 808 GICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAG 887 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4566778888999999999999999999999999999985 67999999999888887766554444444444433322
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHH
Q 007122 271 SGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLR 350 (617)
Q Consensus 271 ~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~ 350 (617)
.++++.++|.+++++++++++++++.....+...+...+..+..++......|+++|+++||+|++|+.+.++|.+..+
T Consensus 888 -~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~ 966 (1321)
T 4f4c_A 888 -IGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLD 966 (1321)
T ss_dssp -HHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHH
T ss_pred -eeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHH
Confidence 2334445666666655555444333333222222222223344556667788999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 351 RYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDL--VMVNGLLFQLSLPLNFLGSVYRETVQSLV 428 (617)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l--~~~~~~~~~l~~pl~~l~~~~~~~~~~~~ 428 (617)
...+...+..............+.....+.++++|++++..|..+++.+ +.+..++.....|+..+...+.++.++..
T Consensus 967 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 1046 (1321)
T 4f4c_A 967 IPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATF 1046 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777766655544444333444444555667777787777766544 33333344445677778888899999999
Q ss_pred HHHHHHHHhcccccccCCCCCCCCCCCCcceEEEeEEEeecC--CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHh
Q 007122 429 DMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (617)
Q Consensus 429 ~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~nvsF~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~ 506 (617)
+++|+.++++.+++.++.....+.++..++|+|+||+|+||+ +.|||+|+||+|+|||+|||||+||||||||+++|+
T Consensus 1047 a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~ 1126 (1321)
T 4f4c_A 1047 AGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLE 1126 (1321)
T ss_dssp HHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHT
T ss_pred HHHHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHh
Confidence 999999999887765443333333445578999999999984 458999999999999999999999999999999999
Q ss_pred cCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCC--CCCCHHHHHHHHHHHcHHHHHHhCCCC
Q 007122 507 RSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGR--LSATEEEVYDAARRAAIHDTIMNFPAK 584 (617)
Q Consensus 507 gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~--~~~~de~i~~a~~~a~l~~~I~~lp~G 584 (617)
|+|+|++|+|++||+|++++++++||++|++|||||+||+|||||||+||. ++++|||+++||+.|+++|||++||+|
T Consensus 1127 rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~G 1206 (1321)
T 4f4c_A 1127 RFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEG 1206 (1321)
T ss_dssp TSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTT
T ss_pred cCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCC
Confidence 999999999999999999999999999999999999999999999999994 468999999999999999999999999
Q ss_pred ccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 585 YSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 585 ldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
|||+|||+|.+|||||||||||||||+|||+||
T Consensus 1207 ldT~vge~G~~LSgGQrQriaiARAllr~~~IL 1239 (1321)
T 4f4c_A 1207 FETRVGDRGTQLSGGQKQRIAIARALVRNPKIL 1239 (1321)
T ss_dssp TCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEE
T ss_pred CCCEecCCCcccCHHHHHHHHHHHHHHhCCCEE
Confidence 999999999999999999999999999999986
No 9
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3.3e-68 Score=643.81 Aligned_cols=502 Identities=25% Similarity=0.325 Sum_probs=396.4
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh------hhh---hhhHHHHHHHHH
Q 007122 108 FRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTAT------ALA---ANSTFLALFGTP 178 (617)
Q Consensus 108 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~------~~~---~~~~~~~l~~~~ 178 (617)
++.+++|.. +..+..+++++++.++..+...+.|++++.++|.+........ ... .......-+...
T Consensus 35 ~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (1284)
T 3g5u_A 35 VLTMFRYAG----WLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTY 110 (1284)
T ss_dssp THHHHTCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHH
Confidence 444444432 3345555666666666677777888899999997642110000 000 000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchHHHHHHHhhHHHHHHHHHHHHH
Q 007122 179 AAVLIGYGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVF 258 (617)
Q Consensus 179 ~~~~~~~~i~~~~~~~~~~lr~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~g~l~~~~~~~~~~i~~~~~~~~~ 258 (617)
...+++. .++..++.+++.+++.+.+.++..++|.++|+|++++|+.||+++++|++.+++++|.+.++..+...+.
T Consensus 111 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~ 187 (1284)
T 3g5u_A 111 AYYYTGI---GAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIG 187 (1284)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 1233456778888999999999999999999999999999999999999999999888888777665555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccch
Q 007122 259 NVVPTILEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNE 338 (617)
Q Consensus 259 ~~~~~~~~~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e 338 (617)
.++..++.++. ..++++.++|.+++++++++++++++...+.+...+..++..+..++.+..+.|.++|+++||+|++|
T Consensus 188 ~~~~~~~~~i~-~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e 266 (1284)
T 3g5u_A 188 MFFQAMATFFG-GFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQ 266 (1284)
T ss_dssp HHHHHHHHHHH-HHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCC
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcch
Confidence 55554443332 23445566788888777777776666666666666666667777788888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 339 AFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGS 418 (617)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~ 418 (617)
+.+.++|++..+++.+...+.............++.....+.++++|++++..|.+|+|+++++..++.....|+..+..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~ 346 (1284)
T 3g5u_A 267 KKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASP 346 (1284)
T ss_dssp CSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888777766665555555545555566677788899999999999999888777788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCC-CCCCCCCCCcceEEEeEEEeecC--CcccceeeeEEEeCCcEEEEECCCc
Q 007122 419 VYRETVQSLVDMKSMFQLLEEKADIQDRD-NAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSG 495 (617)
Q Consensus 419 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~I~~~nvsF~Y~~--~~~vL~~isl~I~~G~~vaIVG~SG 495 (617)
.+..++++.++++|+.++++.+++.++.. .....+...+.|+|+||+|+|++ +.++|+|+||+|+|||++|||||||
T Consensus 347 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sG 426 (1284)
T 3g5u_A 347 NIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSG 426 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCC
Confidence 99999999999999999998766543211 11111223468999999999984 3589999999999999999999999
Q ss_pred chHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHH
Q 007122 496 SGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIH 575 (617)
Q Consensus 496 sGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~ 575 (617)
||||||+++|+|+|+|++|+|.+||+|+++++++++|++|+||||||+||++||+|||.+|+++.++++++++++.++++
T Consensus 427 sGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~ 506 (1284)
T 3g5u_A 427 CGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAY 506 (1284)
T ss_dssp SSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 576 DTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 576 ~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
++++++|+|+||.+||+|.+|||||||||||||||++||+||
T Consensus 507 ~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~il 548 (1284)
T 3g5u_A 507 DFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKIL 548 (1284)
T ss_dssp HHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEE
T ss_pred HHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999999999999999999999999985
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=8.9e-62 Score=587.67 Aligned_cols=480 Identities=24% Similarity=0.345 Sum_probs=375.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 127 VITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFSKV 206 (617)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~~~~~ 206 (617)
+++++++.++..+.....|+++..++|.+........ ......... ..+++.+ ++..++.+++.+.+.+.
T Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~------~~~~~l~---i~~~~~~~~~~~~~~~~ 776 (1284)
T 3g5u_A 707 FVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPET-QRQNSNLFS------LLFLILG---IISFITFFLQGFTFGKA 776 (1284)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTH-HHHHHHHHH------HHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchh-hHHHHHHHH------HHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3445555555556666678888888887653211111 000011111 1111111 12234566778888999
Q ss_pred HHHHHHHHHHHHHHHHHcCCcccccc--cCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 007122 207 ALRTIRSVSRKVFSHLHELDLRYHLS--RETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAW 284 (617)
Q Consensus 207 ~~~~~~~l~~~~~~~ll~~~~~~f~~--~~~g~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~~ 284 (617)
+.++..++|.++|++++++|+.||++ +++|++.+++++|...++......+..++..++.++. ..++++.++|.+++
T Consensus 777 ~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~-~~i~~~~~~~~l~l 855 (1284)
T 3g5u_A 777 GEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGT-GIIISLIYGWQLTL 855 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSSCSSSHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHH
Confidence 99999999999999999999999994 7899999999988888877665555545544443332 23445556777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007122 285 ITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLA 364 (617)
Q Consensus 285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (617)
++++++++++++.....+...+...+..+...+......|.+.|+++||+|+.|+.+.++|.+..+...+...+.....+
T Consensus 856 v~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 935 (1284)
T 3g5u_A 856 LLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFG 935 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666655555555555555555556666777788999999999999999999999999988888877777666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 007122 365 FLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQ 444 (617)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 444 (617)
....+...+.....+.++++|++++..|.+++|.++++..++.....|+..+......++++..+++|+.++++.+++..
T Consensus 936 ~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 1015 (1284)
T 3g5u_A 936 ITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEID 1015 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 55544444444555666677888888999999999999888888888888888888888899999999999998766543
Q ss_pred CCC-CCCCCCCCCcceEEEeEEEeecCC--cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCE
Q 007122 445 DRD-NAMPLNLKGGSIQFDNVHFSYLTE--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ 521 (617)
Q Consensus 445 ~~~-~~~~~~~~~~~I~~~nvsF~Y~~~--~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~ 521 (617)
+.. ...+.+...+.|+++||+|+|++. .++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+
T Consensus 1016 ~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~ 1095 (1284)
T 3g5u_A 1016 SYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGK 1095 (1284)
T ss_dssp SCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSS
T ss_pred ccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCE
Confidence 211 111122234689999999999853 47999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCC--CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChH
Q 007122 522 DICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGG 599 (617)
Q Consensus 522 ~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~--~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGG 599 (617)
|+++++.+++|++|+||||||.+|++||+|||.++++ ..++++++++++.++++++++++|+||||+|||+|.+||||
T Consensus 1096 ~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgG 1175 (1284)
T 3g5u_A 1096 EIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGG 1175 (1284)
T ss_dssp CTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHH
T ss_pred EcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHH
Confidence 9999999999999999999999999999999999975 36899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 007122 600 EKQRVALARAFLKAPPIL 617 (617)
Q Consensus 600 QrQRlaiARAll~~p~IL 617 (617)
|||||||||||+++|+||
T Consensus 1176 q~Qrv~iARal~~~p~iL 1193 (1284)
T 3g5u_A 1176 QKQRIAIARALVRQPHIL 1193 (1284)
T ss_dssp HHHHHHHHHHHHHCCSSE
T ss_pred HHHHHHHHHHHHcCCCEE
Confidence 999999999999999986
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=9.9e-50 Score=410.23 Aligned_cols=198 Identities=60% Similarity=0.930 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCcceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHH
Q 007122 420 YRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKS 499 (617)
Q Consensus 420 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKS 499 (617)
+..++++.++++|++++++.+++..+.....+.+...+.|+++||+|+|+++.++|+|+||+|++||++|||||||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKS 94 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKS 94 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHH
T ss_pred chhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHH
Confidence 45677888999999999987665433222222222346899999999998777899999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHH
Q 007122 500 TILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIM 579 (617)
Q Consensus 500 TL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~ 579 (617)
||+++|+|+|+|++|+|.+||.|+.+++.+++|++|+||||+|++|++||+|||.++.+..++++++++++.++++++++
T Consensus 95 TLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~ 174 (306)
T 3nh6_A 95 TILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIM 174 (306)
T ss_dssp HHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred hCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 580 NFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 580 ~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
.+|+||+|.+|++|.+|||||||||+|||||+++|+||
T Consensus 175 ~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iL 212 (306)
T 3nh6_A 175 AFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGII 212 (306)
T ss_dssp HSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred hccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999999999999999999999999985
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.2e-40 Score=333.94 Aligned_cols=161 Identities=41% Similarity=0.663 Sum_probs=153.2
Q ss_pred cceEEEeEEEeec-CCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 007122 457 GSIQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (617)
Q Consensus 457 ~~I~~~nvsF~Y~-~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i 535 (617)
.+|+++||+|+|+ +++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++...+|++|
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 4799999999995 356899999999999999999999999999999999999999999999999999999988899999
Q ss_pred EEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCC
Q 007122 536 GVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (617)
Q Consensus 536 ~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~ 615 (617)
+||||+|.+|++|++|||.++.+..+++++.++++.+++.++++.+|.|+++.+++++.+||||||||++|||||+++|+
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999876667888999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 007122 616 IL 617 (617)
Q Consensus 616 IL 617 (617)
+|
T Consensus 166 ll 167 (247)
T 2ff7_A 166 IL 167 (247)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 13
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.2e-40 Score=331.65 Aligned_cols=159 Identities=41% Similarity=0.672 Sum_probs=150.7
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|+++||+|+|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|++|+||
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 81 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEE
Confidence 78999999996556899999999999999999999999999999999999999999999999999988878889999999
Q ss_pred ccCCCcccccHHHHHhcC-CCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 539 PQDTVLFNDTIFHNIRYG-RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 539 ~Qd~~LF~gTIreNI~~g-~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
||++.+|++|++|||.++ .+..+++++.++++.++++++++++|.|++|.+++.+.+||||||||++|||||+++|++|
T Consensus 82 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ll 161 (243)
T 1mv5_A 82 SQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKIL 161 (243)
T ss_dssp CCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred cCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999998 5556788899999999999999999999999999999999999999999999999999975
No 14
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=3.6e-39 Score=325.76 Aligned_cols=160 Identities=48% Similarity=0.862 Sum_probs=150.4
Q ss_pred cceEEEeEEEeecCC--cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 007122 457 GSIQFDNVHFSYLTE--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~--~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~ 534 (617)
..|+++||+|+|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++| +|+|.+||.++.+++...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 369999999999753 4799999999999999999999999999999999999987 8999999999998888889999
Q ss_pred eEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCC
Q 007122 535 IGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (617)
Q Consensus 535 i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p 614 (617)
|+||||+|.+|+.|++|||.++.+..+++++.++++.+++.+++..+|+|+||.+++.+.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999986556778889999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 007122 615 PIL 617 (617)
Q Consensus 615 ~IL 617 (617)
+||
T Consensus 175 ~ll 177 (260)
T 2ghi_A 175 KIV 177 (260)
T ss_dssp SEE
T ss_pred CEE
Confidence 975
No 15
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=9e-39 Score=324.62 Aligned_cols=161 Identities=37% Similarity=0.659 Sum_probs=150.1
Q ss_pred cceEEEeEEEeecC--CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 007122 457 GSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~ 534 (617)
+.|+++||+|+|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999975 2689999999999999999999999999999999999999999999999999998888889999
Q ss_pred eEEEccCCCcccccHHHHHhcCCCCCCH-HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCC
Q 007122 535 IGVVPQDTVLFNDTIFHNIRYGRLSATE-EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (617)
Q Consensus 535 i~~V~Qd~~LF~gTIreNI~~g~~~~~d-e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~ 613 (617)
|+||||++.+|+.|++|||.++.+...+ +++.++++.++++++++.+|+|+++.+++.+.+||||||||++|||||+++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998654444 677888889999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 007122 614 PPIL 617 (617)
Q Consensus 614 p~IL 617 (617)
|+||
T Consensus 175 p~ll 178 (271)
T 2ixe_A 175 PRLL 178 (271)
T ss_dssp CSEE
T ss_pred CCEE
Confidence 9975
No 16
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.7e-38 Score=334.10 Aligned_cols=161 Identities=34% Similarity=0.597 Sum_probs=151.9
Q ss_pred CCcceEEEeEEEeec-CCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhc
Q 007122 455 KGGSIQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533 (617)
Q Consensus 455 ~~~~I~~~nvsF~Y~-~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~ 533 (617)
..+.|+++||+|+|+ ++.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||.|+.+++.+.+|+
T Consensus 16 ~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 16 SGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp SSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHH
T ss_pred CCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhC
Confidence 345799999999997 35689999999999999999999999999999999999998 9999999999999999999999
Q ss_pred ceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCC
Q 007122 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (617)
Q Consensus 534 ~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~ 613 (617)
+|+||+|++.+|+.|++|||.+.. ...+++++++++.+++.++++++|.+++|.++++|.+||||||||+||||||+++
T Consensus 95 ~ig~v~Q~~~lf~~tv~enl~~~~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~ 173 (390)
T 3gd7_A 95 AFGVIPQKVFIFSGTFRKNLDPNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSK 173 (390)
T ss_dssp TEEEESCCCCCCSEEHHHHHCTTC-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEcCCcccCccCHHHHhhhcc-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998654 3578899999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 007122 614 PPIL 617 (617)
Q Consensus 614 p~IL 617 (617)
|++|
T Consensus 174 P~lL 177 (390)
T 3gd7_A 174 AKIL 177 (390)
T ss_dssp CCEE
T ss_pred CCEE
Confidence 9985
No 17
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2.8e-36 Score=299.07 Aligned_cols=147 Identities=27% Similarity=0.492 Sum_probs=135.8
Q ss_pred cceEEEeEEEeecC-CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 007122 457 GSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i 535 (617)
+.|+++||+|+|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 46999999999974 56899999999999999999999999999999999999999999999998 59
Q ss_pred EEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCC
Q 007122 536 GVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (617)
Q Consensus 536 ~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~ 615 (617)
+||||+|.+|++|++|||.++.. ..+....++++.+++.++++.+|.+++|.+++++.+||||||||++|||||+++|+
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 150 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 150 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred EEEecCCcccCCCHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999853 34555667778889999999999999999999999999999999999999999999
Q ss_pred CC
Q 007122 616 IL 617 (617)
Q Consensus 616 IL 617 (617)
+|
T Consensus 151 ll 152 (229)
T 2pze_A 151 LY 152 (229)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 18
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=5.7e-36 Score=298.32 Aligned_cols=146 Identities=36% Similarity=0.589 Sum_probs=134.1
Q ss_pred ceEEEeEEEeecC-CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 007122 458 SIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~ 536 (617)
.|+++||+|+|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+|| +++
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~ 69 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA 69 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence 4899999999974 56899999999999999999999999999999999999999999999999 499
Q ss_pred EEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCC
Q 007122 537 VVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPI 616 (617)
Q Consensus 537 ~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~I 616 (617)
||||+|.+|+.|++|||.++.. ..+++..++++.+++.+.+..+|.|++|.+++.+.+||||||||++|||||+++|+|
T Consensus 70 ~v~Q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l 148 (237)
T 2cbz_A 70 YVPQQAWIQNDSLRENILFGCQ-LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI 148 (237)
T ss_dssp EECSSCCCCSEEHHHHHHTTSC-CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EEcCCCcCCCcCHHHHhhCccc-cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999999753 344556677777888888999999999999999999999999999999999999997
Q ss_pred C
Q 007122 617 L 617 (617)
Q Consensus 617 L 617 (617)
|
T Consensus 149 l 149 (237)
T 2cbz_A 149 Y 149 (237)
T ss_dssp E
T ss_pred E
Confidence 5
No 19
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.1e-34 Score=287.61 Aligned_cols=153 Identities=27% Similarity=0.511 Sum_probs=127.3
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHH-hcceE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~l-r~~i~ 536 (617)
.|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+.+...+ +++++
T Consensus 6 ~l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 84 (240)
T 1ji0_A 6 VLEVQSLHVYYGA-IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA 84 (240)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred eEEEEeEEEEECC-eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEE
Confidence 5899999999964 689999999999999999999999999999999999999999999999999998887765 45699
Q ss_pred EEccCCCcccc-cHHHHHhcCC-CCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCC
Q 007122 537 VVPQDTVLFND-TIFHNIRYGR-LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (617)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~-~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p 614 (617)
||||++.+|.+ |++||+.++. +..++++..+.+ ++.++.++ |++........+||||||||++|||||+++|
T Consensus 85 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p 158 (240)
T 1ji0_A 85 LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL-----EWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMSRP 158 (240)
T ss_dssp EECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHH-----HHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTTCC
T ss_pred EEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHH-----HHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999999987 9999999864 222222222222 23344443 4555566778899999999999999999999
Q ss_pred CCC
Q 007122 615 PIL 617 (617)
Q Consensus 615 ~IL 617 (617)
++|
T Consensus 159 ~ll 161 (240)
T 1ji0_A 159 KLL 161 (240)
T ss_dssp SEE
T ss_pred CEE
Confidence 975
No 20
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.8e-34 Score=300.26 Aligned_cols=150 Identities=31% Similarity=0.474 Sum_probs=125.9
Q ss_pred cceEEEeEEEeecCC---cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHH---
Q 007122 457 GSIQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES--- 530 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~--- 530 (617)
..|+++||+++|+.+ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+.+++.++
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 369999999999742 47999999999999999999999999999999999999999999999999999998765
Q ss_pred HhcceEEEccCCCcccc-cHHHHHhcCC--CCCCHH----HHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 531 LRKSIGVVPQDTVLFND-TIFHNIRYGR--LSATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 531 lr~~i~~V~Qd~~LF~g-TIreNI~~g~--~~~~de----~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
+|++||||||++.+|.. |++|||.++. ...+.+ ++.++++.+++.+. ......+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~-----------~~~~~~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK-----------HDSYPSNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGG-----------TTCCTTTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHHH
Confidence 47899999999999865 9999998752 122333 34555555555432 334456899999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
++|||||+.+|++|
T Consensus 172 VaIArAL~~~P~lL 185 (366)
T 3tui_C 172 VAIARALASNPKVL 185 (366)
T ss_dssp HHHHHHTTTCCSEE
T ss_pred HHHHHHHhcCCCEE
Confidence 99999999999985
No 21
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=7.3e-34 Score=288.43 Aligned_cols=149 Identities=30% Similarity=0.525 Sum_probs=123.8
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCC--CCCHHHHhcce
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC--EVTLESLRKSI 535 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~--~~~~~~lr~~i 535 (617)
.|+++||+|+|++..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. +.+...+|++|
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~i 86 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESI 86 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSE
T ss_pred EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcE
Confidence 5999999999986667999999999999999999999999999999999999999999999999994 33455788999
Q ss_pred EEEccCC--CcccccHHHHHhcCC--CCCCHHH----HHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 007122 536 GVVPQDT--VLFNDTIFHNIRYGR--LSATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALA 607 (617)
Q Consensus 536 ~~V~Qd~--~LF~gTIreNI~~g~--~~~~de~----i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiA 607 (617)
+||||+| .+|..|++|||.++. ...+.++ +.++++..++ +........+||||||||++||
T Consensus 87 g~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L-----------~~~~~~~~~~LSgGqkQRv~iA 155 (275)
T 3gfo_A 87 GIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGI-----------EHLKDKPTHCLSFGQKKRVAIA 155 (275)
T ss_dssp EEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTC-----------GGGTTSBGGGSCHHHHHHHHHH
T ss_pred EEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------chhhcCCcccCCHHHHHHHHHH
Confidence 9999997 588999999998762 1234433 3344444443 3333455678999999999999
Q ss_pred HHHhCCCCCC
Q 007122 608 RAFLKAPPIL 617 (617)
Q Consensus 608 RAll~~p~IL 617 (617)
|||+.+|++|
T Consensus 156 raL~~~P~lL 165 (275)
T 3gfo_A 156 GVLVMEPKVL 165 (275)
T ss_dssp HHHTTCCSEE
T ss_pred HHHHcCCCEE
Confidence 9999999985
No 22
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1e-33 Score=281.59 Aligned_cols=148 Identities=31% Similarity=0.439 Sum_probs=121.7
Q ss_pred eEEEeEEEeecCC---cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHH----
Q 007122 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL---- 531 (617)
Q Consensus 459 I~~~nvsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~l---- 531 (617)
|+++||+|+|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++..++
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 7899999999742 469999999999999999999999999999999999999999999999999999998764
Q ss_pred hcceEEEccCCCcccc-cHHHHHhcCC-----CCCCHHH----HHHHHHHHcHHHHHHhCCCCcccc-ccCCCCCCChHH
Q 007122 532 RKSIGVVPQDTVLFND-TIFHNIRYGR-----LSATEEE----VYDAARRAAIHDTIMNFPAKYSTV-VGERGLKLSGGE 600 (617)
Q Consensus 532 r~~i~~V~Qd~~LF~g-TIreNI~~g~-----~~~~de~----i~~a~~~a~l~~~I~~lp~GldT~-vge~G~~LSGGQ 600 (617)
|++|+||||+|.+|.. |++||+.++. ...+.++ +.++++..++ +.. .......|||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~~LSgGq 150 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL-----------EERFANHKPNQLSGGQ 150 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTC-----------CGGGTTCCGGGSCHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCC-----------ChhhhhCChhhCCHHH
Confidence 4579999999999987 9999997631 1223332 2333333332 222 245677899999
Q ss_pred HHHHHHHHHHhCCCCCC
Q 007122 601 KQRVALARAFLKAPPIL 617 (617)
Q Consensus 601 rQRlaiARAll~~p~IL 617 (617)
|||++|||||+.+|++|
T Consensus 151 ~QRv~iAral~~~p~ll 167 (235)
T 3tif_A 151 QQRVAIARALANNPPII 167 (235)
T ss_dssp HHHHHHHHHHTTCCSEE
T ss_pred HHHHHHHHHHHcCCCEE
Confidence 99999999999999975
No 23
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=8.2e-34 Score=290.25 Aligned_cols=143 Identities=29% Similarity=0.531 Sum_probs=117.8
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~ 536 (617)
+.|+++||+|.| +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+|| +|+
T Consensus 39 ~~l~~~~l~~~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i~ 102 (290)
T 2bbs_A 39 DSLSFSNFSLLG---TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RIS 102 (290)
T ss_dssp -----------C---CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CEE
T ss_pred ceEEEEEEEEcC---ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EEE
Confidence 469999999964 5799999999999999999999999999999999999999999999998 599
Q ss_pred EEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCC
Q 007122 537 VVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPI 616 (617)
Q Consensus 537 ~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~I 616 (617)
||||++.+|++|++|||. +. ...+..+.++++..++.++++.+|.+++|.+++.+.+||||||||++|||||+++|++
T Consensus 103 ~v~Q~~~l~~~tv~enl~-~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~l 180 (290)
T 2bbs_A 103 FCSQNSWIMPGTIKENII-GV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 180 (290)
T ss_dssp EECSSCCCCSSBHHHHHH-TT-CCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSE
T ss_pred EEeCCCccCcccHHHHhh-Cc-ccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCE
Confidence 999999999999999998 53 2345556677788899999999999999999999999999999999999999999997
Q ss_pred C
Q 007122 617 L 617 (617)
Q Consensus 617 L 617 (617)
|
T Consensus 181 l 181 (290)
T 2bbs_A 181 Y 181 (290)
T ss_dssp E
T ss_pred E
Confidence 5
No 24
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-33 Score=276.06 Aligned_cols=143 Identities=20% Similarity=0.360 Sum_probs=121.7
Q ss_pred CcceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 007122 456 GGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (617)
Q Consensus 456 ~~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i 535 (617)
+..|+++||+++|++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++. .+|+++
T Consensus 8 ~~~l~~~~ls~~y~~--~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK--PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp -CEEEEEEEEEESSS--EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred CceEEEEEEEEEeCC--eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 457999999999965 8999999999999999999999999999999999999999999999999986 368899
Q ss_pred EEEccCCCcccc-cHHHHHhcCCC----CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 007122 536 GVVPQDTVLFND-TIFHNIRYGRL----SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (617)
Q Consensus 536 ~~V~Qd~~LF~g-TIreNI~~g~~----~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAl 610 (617)
+||||++.+|.+ |++||+.++.. ...++++.++++..+ ++.. .....+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~-~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVE-----------VLDL-KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTT-----------CCCT-TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcC-----------CCcC-CCChhhCCHHHHHHHHHHHHH
Confidence 999999999986 99999987521 122455555555443 4444 566789999999999999999
Q ss_pred hCCCCCC
Q 007122 611 LKAPPIL 617 (617)
Q Consensus 611 l~~p~IL 617 (617)
+++|++|
T Consensus 149 ~~~p~ll 155 (214)
T 1sgw_A 149 LVNAEIY 155 (214)
T ss_dssp TSCCSEE
T ss_pred HhCCCEE
Confidence 9999975
No 25
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=9e-34 Score=280.09 Aligned_cols=148 Identities=30% Similarity=0.407 Sum_probs=121.3
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHH---Hh-c
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---LR-K 533 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~---lr-~ 533 (617)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+... +| +
T Consensus 4 ~l~~~~l~~~y~~-~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 4 ILRAENIKKVIRG-YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred EEEEEeEEEEECC-EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 4899999999964 68999999999999999999999999999999999999999999999999998887653 34 7
Q ss_pred ceEEEccCCCccc-ccHHHHHhcCCC--CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 007122 534 SIGVVPQDTVLFN-DTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606 (617)
Q Consensus 534 ~i~~V~Qd~~LF~-gTIreNI~~g~~--~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlai 606 (617)
+++||||++.+|. .|++||+.++.. ..+. +++.++++..++ +........+||||||||++|
T Consensus 83 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qrv~l 151 (224)
T 2pcj_A 83 KLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGL-----------GDKLSRKPYELSGGEQQRVAI 151 (224)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC-----------TTCTTCCGGGSCHHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC-----------chhhhCChhhCCHHHHHHHHH
Confidence 8999999999886 599999987521 1222 233444444433 223344556899999999999
Q ss_pred HHHHhCCCCCC
Q 007122 607 ARAFLKAPPIL 617 (617)
Q Consensus 607 ARAll~~p~IL 617 (617)
||||+.+|++|
T Consensus 152 aral~~~p~ll 162 (224)
T 2pcj_A 152 ARALANEPILL 162 (224)
T ss_dssp HHHTTTCCSEE
T ss_pred HHHHHcCCCEE
Confidence 99999999975
No 26
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.8e-33 Score=283.74 Aligned_cols=145 Identities=30% Similarity=0.489 Sum_probs=125.4
Q ss_pred eEEEeEEEeec-CC---cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 007122 459 IQFDNVHFSYL-TE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534 (617)
Q Consensus 459 I~~~nvsF~Y~-~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~ 534 (617)
|+++||+|+|+ ++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+. .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 89999999997 33 5799999999999999999999999999999999999999999999999998642 67889
Q ss_pred eEEEccCC--CcccccHHHHHhcCCC-----CCCHHHHHHHHHHHcHH--HHHHhCCCCccccccCCCCCCChHHHHHHH
Q 007122 535 IGVVPQDT--VLFNDTIFHNIRYGRL-----SATEEEVYDAARRAAIH--DTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605 (617)
Q Consensus 535 i~~V~Qd~--~LF~gTIreNI~~g~~-----~~~de~i~~a~~~a~l~--~~I~~lp~GldT~vge~G~~LSGGQrQRla 605 (617)
|+||||+| .+++.|++||+.++.. ...++++.++++..++. ++.++.| .+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHHH
Confidence 99999996 5788999999988632 12246678888888886 6554433 679999999999
Q ss_pred HHHHHhCCCCCC
Q 007122 606 LARAFLKAPPIL 617 (617)
Q Consensus 606 iARAll~~p~IL 617 (617)
|||||+++|+||
T Consensus 149 lAraL~~~p~ll 160 (266)
T 2yz2_A 149 IASVIVHEPDIL 160 (266)
T ss_dssp HHHHHTTCCSEE
T ss_pred HHHHHHcCCCEE
Confidence 999999999985
No 27
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=3e-33 Score=283.03 Aligned_cols=148 Identities=28% Similarity=0.435 Sum_probs=127.1
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++.+.+.+.+++.++|
T Consensus 11 ~l~~~~l~~~~~-~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~ 89 (266)
T 4g1u_C 11 LLEASHLHYHVQ-QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAV 89 (266)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEEeEEEEeC-CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEE
Confidence 699999999996 5689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCc-ccccHHHHHhcCCCC----CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhC
Q 007122 538 VPQDTVL-FNDTIFHNIRYGRLS----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612 (617)
Q Consensus 538 V~Qd~~L-F~gTIreNI~~g~~~----~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~ 612 (617)
|+|++.+ |+.|++||+.++... ..++++.++++..++.+. ......+||||||||++|||||++
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~QRv~iAraL~~ 158 (266)
T 4g1u_C 90 MRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLAL-----------AQRDYRVLSGGEQQRVQLARVLAQ 158 (266)
T ss_dssp ECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTT-----------TTSBGGGCCHHHHHHHHHHHHHHH
T ss_pred EecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhH-----------hcCCcccCCHHHHHHHHHHHHHhc
Confidence 9999887 678999999887422 223456666666655332 223345799999999999999999
Q ss_pred ------CCCCC
Q 007122 613 ------APPIL 617 (617)
Q Consensus 613 ------~p~IL 617 (617)
+|++|
T Consensus 159 ~~~~~~~p~lL 169 (266)
T 4g1u_C 159 LWQPQPTPRWL 169 (266)
T ss_dssp TCCSSCCCEEE
T ss_pred ccccCCCCCEE
Confidence 99875
No 28
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.3e-33 Score=282.12 Aligned_cols=148 Identities=23% Similarity=0.436 Sum_probs=124.7
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~ 536 (617)
+.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+ ....+|++|+
T Consensus 14 ~~l~i~~l~~~y~-~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i~ 91 (256)
T 1vpl_A 14 GAVVVKDLRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLIS 91 (256)
T ss_dssp CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTEE
T ss_pred CeEEEEEEEEEEC-CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcEE
Confidence 4799999999995 4689999999999999999999999999999999999999999999999999976 5667888999
Q ss_pred EEccCCCcccc-cHHHHHhcCCC--CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 007122 537 VVPQDTVLFND-TIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (617)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~--~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARA 609 (617)
||||++.+|.. |++||+.++.. ..+. +++.++++..++.++ ......+||||||||++||||
T Consensus 92 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~qRv~lAra 160 (256)
T 1vpl_A 92 YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEK-----------IKDRVSTYSKGMVRKLLIARA 160 (256)
T ss_dssp EECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGG-----------GGSBGGGCCHHHHHHHHHHHH
T ss_pred EEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchH-----------hcCChhhCCHHHHHHHHHHHH
Confidence 99999999877 99999987421 1222 345555665555432 233456899999999999999
Q ss_pred HhCCCCCC
Q 007122 610 FLKAPPIL 617 (617)
Q Consensus 610 ll~~p~IL 617 (617)
|+.+|++|
T Consensus 161 L~~~p~ll 168 (256)
T 1vpl_A 161 LMVNPRLA 168 (256)
T ss_dssp HTTCCSEE
T ss_pred HHcCCCEE
Confidence 99999975
No 29
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.2e-32 Score=277.78 Aligned_cols=148 Identities=31% Similarity=0.461 Sum_probs=122.7
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCC--CCCHHHHhcce
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC--EVTLESLRKSI 535 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~--~~~~~~lr~~i 535 (617)
.|+++||+|+|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++. +.+...+|++|
T Consensus 24 ~l~i~~l~~~y~-~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i 102 (263)
T 2olj_A 24 MIDVHQLKKSFG-SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEV 102 (263)
T ss_dssp SEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHE
T ss_pred eEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcE
Confidence 599999999995 457999999999999999999999999999999999999999999999999985 34556778899
Q ss_pred EEEccCCCcccc-cHHHHHhcCC---CCCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 007122 536 GVVPQDTVLFND-TIFHNIRYGR---LSATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALA 607 (617)
Q Consensus 536 ~~V~Qd~~LF~g-TIreNI~~g~---~~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiA 607 (617)
+||||++.+|.. |++||+.++. ...+. +++.++++..++. ........+||||||||++||
T Consensus 103 ~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-----------~~~~~~~~~LSgGqkQRv~lA 171 (263)
T 2olj_A 103 GMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLK-----------DKAHAYPDSLSGGQAQRVAIA 171 (263)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-----------GGTTSCGGGSCHHHHHHHHHH
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-----------hHhcCChhhCCHHHHHHHHHH
Confidence 999999999976 9999998742 12232 2344444444443 233445678999999999999
Q ss_pred HHHhCCCCCC
Q 007122 608 RAFLKAPPIL 617 (617)
Q Consensus 608 RAll~~p~IL 617 (617)
|||+.+|++|
T Consensus 172 raL~~~p~ll 181 (263)
T 2olj_A 172 RALAMEPKIM 181 (263)
T ss_dssp HHHTTCCSEE
T ss_pred HHHHCCCCEE
Confidence 9999999975
No 30
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=5.7e-33 Score=290.27 Aligned_cols=148 Identities=30% Similarity=0.504 Sum_probs=123.0
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCC--CCHHHHhcce
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE--VTLESLRKSI 535 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~--~~~~~lr~~i 535 (617)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+ .+....+++|
T Consensus 4 ~l~i~~ls~~y~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred EEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCE
Confidence 589999999995 5689999999999999999999999999999999999999999999999999833 2233457789
Q ss_pred EEEccCCCccc-ccHHHHHhcCCCC--CC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 007122 536 GVVPQDTVLFN-DTIFHNIRYGRLS--AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (617)
Q Consensus 536 ~~V~Qd~~LF~-gTIreNI~~g~~~--~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiAR 608 (617)
|||+|++.+|. .|++|||.|+... .+ ++++.++++..++.++. ......||||||||++|||
T Consensus 83 g~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~-----------~r~~~~LSGGq~QRValAr 151 (359)
T 3fvq_A 83 GYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELA-----------GRYPHELSGGQQQRAALAR 151 (359)
T ss_dssp EEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGT-----------TSCGGGSCHHHHHHHHHHH
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHh-----------cCChhhCCHHHHHHHHHHH
Confidence 99999999996 5999999997421 12 23456666666654433 3344689999999999999
Q ss_pred HHhCCCCCC
Q 007122 609 AFLKAPPIL 617 (617)
Q Consensus 609 All~~p~IL 617 (617)
||+.+|++|
T Consensus 152 AL~~~P~lL 160 (359)
T 3fvq_A 152 ALAPDPELI 160 (359)
T ss_dssp HHTTCCSEE
T ss_pred HHHcCCCEE
Confidence 999999985
No 31
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.98 E-value=1.5e-32 Score=277.07 Aligned_cols=152 Identities=26% Similarity=0.387 Sum_probs=125.1
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHH-HHhcceE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE-SLRKSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~-~lr~~i~ 536 (617)
.|+++||+|+|+ +.++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+.+.. .+|++|+
T Consensus 7 ~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 85 (257)
T 1g6h_A 7 ILRTENIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 85 (257)
T ss_dssp EEEEEEEEEEET-TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred EEEEeeeEEEEC-CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 599999999996 45799999999999999999999999999999999999999999999999999887754 4677899
Q ss_pred EEccCCCccc-ccHHHHHhcCCCC---------------CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHH
Q 007122 537 VVPQDTVLFN-DTIFHNIRYGRLS---------------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGE 600 (617)
Q Consensus 537 ~V~Qd~~LF~-gTIreNI~~g~~~---------------~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQ 600 (617)
||||++.+|. .|++||+.++... .+.++. ...+.+.++.+ |++........+|||||
T Consensus 86 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgGq 158 (257)
T 1g6h_A 86 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM-----VEKAFKILEFL--KLSHLYDRKAGELSGGQ 158 (257)
T ss_dssp ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHH-----HHHHHHHHHHT--TCGGGTTSBGGGSCHHH
T ss_pred EEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHH-----HHHHHHHHHHc--CCchhhCCCchhCCHHH
Confidence 9999999886 6999999886321 111111 11233444444 55555667778999999
Q ss_pred HHHHHHHHHHhCCCCCC
Q 007122 601 KQRVALARAFLKAPPIL 617 (617)
Q Consensus 601 rQRlaiARAll~~p~IL 617 (617)
|||++|||||+.+|++|
T Consensus 159 kQrv~iAraL~~~p~ll 175 (257)
T 1g6h_A 159 MKLVEIGRALMTNPKMI 175 (257)
T ss_dssp HHHHHHHHHHHTCCSEE
T ss_pred HHHHHHHHHHHcCCCEE
Confidence 99999999999999975
No 32
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.98 E-value=4.7e-33 Score=291.08 Aligned_cols=148 Identities=32% Similarity=0.524 Sum_probs=123.9
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~ 536 (617)
..|+++||+++|+++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .+++|+
T Consensus 13 ~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig 90 (355)
T 1z47_A 13 MTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNVG 90 (355)
T ss_dssp EEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSEE
T ss_pred ceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcEE
Confidence 479999999999545679999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEccCCCcccc-cHHHHHhcCCC--CCC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 007122 537 VVPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (617)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~--~~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARA 609 (617)
||+|++.+|.. |++|||.|+.. ..+ ++++.++++..++.++.+ ..-.+||||||||++||||
T Consensus 91 ~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------r~~~~LSGGq~QRvalArA 159 (355)
T 1z47_A 91 LVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYAN-----------RFPHELSGGQQQRVALARA 159 (355)
T ss_dssp EECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-----------SCGGGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhc-----------CCcccCCHHHHHHHHHHHH
Confidence 99999999975 99999988621 122 234555666665544333 3346899999999999999
Q ss_pred HhCCCCCC
Q 007122 610 FLKAPPIL 617 (617)
Q Consensus 610 ll~~p~IL 617 (617)
|+.+|++|
T Consensus 160 L~~~P~lL 167 (355)
T 1z47_A 160 LAPRPQVL 167 (355)
T ss_dssp HTTCCSEE
T ss_pred HHcCCCEE
Confidence 99999975
No 33
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.98 E-value=4.3e-33 Score=283.75 Aligned_cols=148 Identities=26% Similarity=0.393 Sum_probs=122.1
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCC--CCCHHHHhcce
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC--EVTLESLRKSI 535 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~--~~~~~~lr~~i 535 (617)
.|+++||+|+|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. +.+...+|++|
T Consensus 21 ~l~~~~l~~~y~-~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i 99 (279)
T 2ihy_A 21 LIQLDQIGRMKQ-GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHI 99 (279)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTE
T ss_pred eEEEEeEEEEEC-CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcE
Confidence 599999999996 468999999999999999999999999999999999999999999999999998 77888889999
Q ss_pred EEEccCCCc-ccc--cHHHHHhcCCCC-------CCH---HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 007122 536 GVVPQDTVL-FND--TIFHNIRYGRLS-------ATE---EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQ 602 (617)
Q Consensus 536 ~~V~Qd~~L-F~g--TIreNI~~g~~~-------~~d---e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQ 602 (617)
+||||++.+ |.. |++|||.++... ..+ +++.++++..++ +........+|||||||
T Consensus 100 ~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgGqkq 168 (279)
T 2ihy_A 100 GFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGM-----------SAKAQQYIGYLSTGEKQ 168 (279)
T ss_dssp EEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTC-----------GGGTTSBGGGSCHHHHH
T ss_pred EEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCC-----------hhHhcCChhhCCHHHHH
Confidence 999999875 555 999999986311 122 223344444433 33344556789999999
Q ss_pred HHHHHHHHhCCCCCC
Q 007122 603 RVALARAFLKAPPIL 617 (617)
Q Consensus 603 RlaiARAll~~p~IL 617 (617)
|++|||||+.+|++|
T Consensus 169 Rv~lAraL~~~p~lL 183 (279)
T 2ihy_A 169 RVMIARALMGQPQVL 183 (279)
T ss_dssp HHHHHHHHHTCCSEE
T ss_pred HHHHHHHHhCCCCEE
Confidence 999999999999975
No 34
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.98 E-value=7.8e-33 Score=279.70 Aligned_cols=149 Identities=32% Similarity=0.484 Sum_probs=122.9
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCC----------CCC
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC----------EVT 527 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~----------~~~ 527 (617)
.|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. +++
T Consensus 6 ~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 6 KLHVIDLHKRYG-GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred eEEEeeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 499999999995 458999999999999999999999999999999999999999999999999986 244
Q ss_pred H---HHHhcceEEEccCCCcccc-cHHHHHhcCC---CCCC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCC
Q 007122 528 L---ESLRKSIGVVPQDTVLFND-TIFHNIRYGR---LSAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKL 596 (617)
Q Consensus 528 ~---~~lr~~i~~V~Qd~~LF~g-TIreNI~~g~---~~~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~L 596 (617)
. ..+|++++||||++.+|.. |++|||.++. ...+ ++++.++++..++.+++ ......+|
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~L 154 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERA----------QGKYPVHL 154 (262)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHH----------HTSCGGGS
T ss_pred hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchh----------hcCCcccC
Confidence 3 3567889999999999876 9999998742 1222 23455556666555441 23345689
Q ss_pred ChHHHHHHHHHHHHhCCCCCC
Q 007122 597 SGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 597 SGGQrQRlaiARAll~~p~IL 617 (617)
|||||||++|||||+.+|++|
T Consensus 155 SgGq~qRv~lAraL~~~p~ll 175 (262)
T 1b0u_A 155 SGGQQQRVSIARALAMEPDVL 175 (262)
T ss_dssp CHHHHHHHHHHHHHHTCCSEE
T ss_pred CHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999975
No 35
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.98 E-value=5e-33 Score=292.66 Aligned_cols=146 Identities=27% Similarity=0.468 Sum_probs=122.8
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||.++.+.++. ++.|+|
T Consensus 3 ~l~~~~l~~~yg-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig~ 79 (381)
T 3rlf_A 3 SVQLQNVTKAWG-EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGM 79 (381)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEEE
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEEE
Confidence 489999999996 56899999999999999999999999999999999999999999999999999988765 467999
Q ss_pred EccCCCcccc-cHHHHHhcCCC--CCCHH----HHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 007122 538 VPQDTVLFND-TIFHNIRYGRL--SATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (617)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~--~~~de----~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAl 610 (617)
|+|++.||.. |++|||.|+.. ..+.+ ++.++++..++.+ .....-.+||||||||++|||||
T Consensus 80 VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------~~~r~p~~LSGGqrQRVaiArAL 148 (381)
T 3rlf_A 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-----------LLDRKPKALSGGQRQRVAIGRTL 148 (381)
T ss_dssp ECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGG-----------GTTCCGGGSCHHHHHHHHHHHHH
T ss_pred EecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhHCCHHHHHHHHHHHHH
Confidence 9999999965 99999988621 23333 3444555555443 23344568999999999999999
Q ss_pred hCCCCCC
Q 007122 611 LKAPPIL 617 (617)
Q Consensus 611 l~~p~IL 617 (617)
+.+|++|
T Consensus 149 ~~~P~lL 155 (381)
T 3rlf_A 149 VAEPSVF 155 (381)
T ss_dssp HHCCSEE
T ss_pred HcCCCEE
Confidence 9999975
No 36
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.98 E-value=1.5e-32 Score=288.03 Aligned_cols=146 Identities=36% Similarity=0.554 Sum_probs=123.7
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. +++|+|
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 79 (359)
T 2yyz_A 3 SIRVVNLKKYFG-KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVGM 79 (359)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEE
T ss_pred EEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEEE
Confidence 489999999995 45799999999999999999999999999999999999999999999999999887754 578999
Q ss_pred EccCCCcccc-cHHHHHhcCCC--CCC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 007122 538 VPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (617)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~--~~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAl 610 (617)
|+|++.+|.. |++|||.|+.. ..+ ++++.++++..++.++.++ .-.+||||||||++|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-----------~~~~LSgGq~QRvalArAL 148 (359)
T 2yyz_A 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDR-----------KPTQLSGGQQQRVALARAL 148 (359)
T ss_dssp ECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHHHHHHHHH
Confidence 9999999965 99999998742 122 2345666666666544333 3468999999999999999
Q ss_pred hCCCCCC
Q 007122 611 LKAPPIL 617 (617)
Q Consensus 611 l~~p~IL 617 (617)
+++|++|
T Consensus 149 ~~~P~lL 155 (359)
T 2yyz_A 149 VKQPKVL 155 (359)
T ss_dssp TTCCSEE
T ss_pred HcCCCEE
Confidence 9999975
No 37
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.97 E-value=8.2e-33 Score=290.31 Aligned_cols=146 Identities=31% Similarity=0.529 Sum_probs=122.1
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. +++|+|
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 79 (362)
T 2it1_A 3 EIKLENIVKKFG-NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGL 79 (362)
T ss_dssp CEEEEEEEEESS-SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEE
T ss_pred EEEEEeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEEE
Confidence 489999999995 45799999999999999999999999999999999999999999999999999887754 578999
Q ss_pred EccCCCcccc-cHHHHHhcCCC--CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 007122 538 VPQDTVLFND-TIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (617)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~--~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAl 610 (617)
|+|++.+|.. |++|||.|+.. ..+. +++.++++..++.++. ...-.+||||||||++|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-----------~r~~~~LSGGq~QRvalArAL 148 (362)
T 2it1_A 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLL-----------NRYPWQLSGGQQQRVAIARAL 148 (362)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCT-----------TCCGGGSCHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHh-----------hCChhhCCHHHHHHHHHHHHH
Confidence 9999999975 99999988621 1222 3355555555554332 333468999999999999999
Q ss_pred hCCCCCC
Q 007122 611 LKAPPIL 617 (617)
Q Consensus 611 l~~p~IL 617 (617)
+.+|++|
T Consensus 149 ~~~P~lL 155 (362)
T 2it1_A 149 VKEPEVL 155 (362)
T ss_dssp TTCCSEE
T ss_pred HcCCCEE
Confidence 9999975
No 38
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.97 E-value=1.7e-32 Score=286.66 Aligned_cols=144 Identities=33% Similarity=0.522 Sum_probs=122.6
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|+++||+++|++ . +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .+++|+||
T Consensus 2 l~~~~l~~~y~~-~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~v 77 (348)
T 3d31_A 2 IEIESLSRKWKN-F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAFV 77 (348)
T ss_dssp EEEEEEEEECSS-C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEEE
T ss_pred EEEEEEEEEECC-E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEEE
Confidence 789999999964 4 9999999999999999999999999999999999999999999999999987654 46789999
Q ss_pred ccCCCcccc-cHHHHHhcCCC---CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCC
Q 007122 539 PQDTVLFND-TIFHNIRYGRL---SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (617)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~---~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p 614 (617)
+|++.+|.. |++|||.|+.. ...++++.++++..++.++.++ ...+||||||||++|||||+++|
T Consensus 78 ~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~-----------~~~~LSgGq~QRvalAraL~~~P 146 (348)
T 3d31_A 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDR-----------NPLTLSGGEQQRVALARALVTNP 146 (348)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTS-----------CGGGSCHHHHHHHHHHHHTTSCC
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHHHHHHHHHHcCC
Confidence 999999976 99999988521 1123667777777766543333 34689999999999999999999
Q ss_pred CCC
Q 007122 615 PIL 617 (617)
Q Consensus 615 ~IL 617 (617)
++|
T Consensus 147 ~lL 149 (348)
T 3d31_A 147 KIL 149 (348)
T ss_dssp SEE
T ss_pred CEE
Confidence 975
No 39
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.97 E-value=1.5e-32 Score=288.07 Aligned_cols=148 Identities=30% Similarity=0.453 Sum_probs=122.5
Q ss_pred ceEEEeEEEeecCCcc--cceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCC---HHHHh
Q 007122 458 SIQFDNVHFSYLTERK--ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT---LESLR 532 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~--vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~---~~~lr 532 (617)
.|+++||+++|++ .+ +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ....+
T Consensus 3 ~l~i~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp CEEEEEEEEEEGG-GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECC-EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 4899999999964 46 999999999999999999999999999999999999999999999999986621 23457
Q ss_pred cceEEEccCCCcccc-cHHHHHhcCCC--CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 007122 533 KSIGVVPQDTVLFND-TIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605 (617)
Q Consensus 533 ~~i~~V~Qd~~LF~g-TIreNI~~g~~--~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRla 605 (617)
++|+||+|++.+|.. |++|||.|+.. ..+. +++.++++..++.++.+ ..-.+||||||||++
T Consensus 82 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------~~~~~LSGGq~QRva 150 (353)
T 1oxx_K 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN-----------HFPRELSGAQQQRVA 150 (353)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTT-----------SCGGGSCHHHHHHHH
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhc-----------CChhhCCHHHHHHHH
Confidence 889999999999975 99999998742 1232 34555666666554333 334689999999999
Q ss_pred HHHHHhCCCCCC
Q 007122 606 LARAFLKAPPIL 617 (617)
Q Consensus 606 iARAll~~p~IL 617 (617)
|||||+.+|++|
T Consensus 151 lAraL~~~P~lL 162 (353)
T 1oxx_K 151 LARALVKDPSLL 162 (353)
T ss_dssp HHHHHTTCCSEE
T ss_pred HHHHHHhCCCEE
Confidence 999999999975
No 40
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.97 E-value=2.2e-32 Score=273.83 Aligned_cols=141 Identities=30% Similarity=0.364 Sum_probs=124.1
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++||+|+ ++|+|+||+|++||+++|+||||||||||+++|+|+++|+ |+|.++|.++.+.+...+|++++|
T Consensus 4 ~l~~~~l~~~-----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~ 77 (249)
T 2qi9_C 4 VMQLQDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAY 77 (249)
T ss_dssp EEEEEEEEET-----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEEEceEEE-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEE
Confidence 4899999987 6999999999999999999999999999999999999999 999999999998888899999999
Q ss_pred EccCCCcccc-cHHHHHhcCCC-CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCC
Q 007122 538 VPQDTVLFND-TIFHNIRYGRL-SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (617)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~-~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~ 615 (617)
|||++.+|.+ |++||+.++.. ..+++++.++++..++.++ ......+||||||||++|||||+++|+
T Consensus 78 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~lAraL~~~p~ 146 (249)
T 2qi9_C 78 LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAVVLQITP 146 (249)
T ss_dssp ECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGG-----------TTSBGGGCCHHHHHHHHHHHHHHHHCT
T ss_pred ECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 9999998865 99999998742 2236667777777766543 334567899999999999999999998
No 41
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.97 E-value=2.7e-32 Score=287.40 Aligned_cols=146 Identities=25% Similarity=0.426 Sum_probs=117.8
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. +++|+|
T Consensus 11 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 87 (372)
T 1v43_A 11 EVKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISM 87 (372)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEE
T ss_pred eEEEEEEEEEEC-CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEEE
Confidence 499999999995 46799999999999999999999999999999999999999999999999999887654 578999
Q ss_pred EccCCCcccc-cHHHHHhcCCC--CCCHH----HHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 007122 538 VPQDTVLFND-TIFHNIRYGRL--SATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (617)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~--~~~de----~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAl 610 (617)
|+|++.+|.. |++|||.|+.. ..+.+ ++.++++..++.++. ...-.+||||||||++|||||
T Consensus 88 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-----------~r~~~~LSGGq~QRvalArAL 156 (372)
T 1v43_A 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELL-----------NRYPAQLSGGQRQRVAVARAI 156 (372)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGT-----------TSCTTTCCSSCHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHH
Confidence 9999999964 99999999743 22332 345555555554433 334468999999999999999
Q ss_pred hCCCCCC
Q 007122 611 LKAPPIL 617 (617)
Q Consensus 611 l~~p~IL 617 (617)
+.+|++|
T Consensus 157 ~~~P~lL 163 (372)
T 1v43_A 157 VVEPDVL 163 (372)
T ss_dssp TTCCSEE
T ss_pred hcCCCEE
Confidence 9999975
No 42
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.97 E-value=2.7e-32 Score=271.89 Aligned_cols=142 Identities=32% Similarity=0.530 Sum_probs=117.0
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
|+++||+++|++ +|+|+||+|++ |+++|+||||||||||+++|+|+++|++|+|.+||.++.+.. .+|++|+||
T Consensus 2 l~~~~l~~~y~~---~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~v 75 (240)
T 2onk_A 2 FLKVRAEKRLGN---FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGFV 75 (240)
T ss_dssp CEEEEEEEEETT---EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBCC
T ss_pred EEEEEEEEEeCC---EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEEE
Confidence 789999999953 59999999999 999999999999999999999999999999999999987643 357789999
Q ss_pred ccCCCcccc-cHHHHHhcCCCCCC----HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCC
Q 007122 539 PQDTVLFND-TIFHNIRYGRLSAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (617)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~~~~----de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~ 613 (617)
||++.+|.. |++||+.++..... ++++.++++..++. ........+||||||||++|||||+++
T Consensus 76 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkqRv~lAral~~~ 144 (240)
T 2onk_A 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIA-----------HLLDRKPARLSGGERQRVALARALVIQ 144 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCT-----------TTTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred cCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCH-----------HHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999976 99999998743211 22334444444332 223344568999999999999999999
Q ss_pred CCCC
Q 007122 614 PPIL 617 (617)
Q Consensus 614 p~IL 617 (617)
|++|
T Consensus 145 p~ll 148 (240)
T 2onk_A 145 PRLL 148 (240)
T ss_dssp CSSB
T ss_pred CCEE
Confidence 9986
No 43
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.97 E-value=3.9e-32 Score=286.71 Aligned_cols=146 Identities=26% Similarity=0.428 Sum_probs=121.7
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCC------CCHHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE------VTLESL 531 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~------~~~~~l 531 (617)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+ .+. .
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~--~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP--K 79 (372)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--G
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--h
Confidence 489999999995 4679999999999999999999999999999999999999999999999999876 544 3
Q ss_pred hcceEEEccCCCccc-ccHHHHHhcCCC--CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 007122 532 RKSIGVVPQDTVLFN-DTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (617)
Q Consensus 532 r~~i~~V~Qd~~LF~-gTIreNI~~g~~--~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRl 604 (617)
+++|+||+|++.+|. .|++|||.|+.. ..+. +++.++++..++.++.+ ..-.+||||||||+
T Consensus 80 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------r~~~~LSGGq~QRv 148 (372)
T 1g29_1 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-----------RKPRELSGGQRQRV 148 (372)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTT-----------CCGGGSCHHHHHHH
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-----------CCcccCCHHHHHHH
Confidence 578999999999995 599999988621 1232 34556666666544333 33468999999999
Q ss_pred HHHHHHhCCCCCC
Q 007122 605 ALARAFLKAPPIL 617 (617)
Q Consensus 605 aiARAll~~p~IL 617 (617)
||||||+.+|++|
T Consensus 149 alArAL~~~P~lL 161 (372)
T 1g29_1 149 ALGRAIVRKPQVF 161 (372)
T ss_dssp HHHHHHHTCCSEE
T ss_pred HHHHHHhcCCCEE
Confidence 9999999999975
No 44
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.97 E-value=3.7e-32 Score=273.02 Aligned_cols=149 Identities=27% Similarity=0.380 Sum_probs=114.0
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcC--CCCCCCeEEECCEeCCCCCHHHH-hcc
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--FDTHSGSIRIDGQDICEVTLESL-RKS 534 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl--~~p~~G~I~idG~~i~~~~~~~l-r~~ 534 (617)
.|+++||+|+|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.+||.++.+.+.... +..
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 3 QLEIRDLWASID-GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred eEEEEeEEEEEC-CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 489999999996 46899999999999999999999999999999999999 89999999999999998887765 456
Q ss_pred eEEEccCCCcccc-cHHHHHhcCCC-----CCCH----HHHHHHHHHHcHHHHHHhCCCCccccccCCCCC-CChHHHHH
Q 007122 535 IGVVPQDTVLFND-TIFHNIRYGRL-----SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLK-LSGGEKQR 603 (617)
Q Consensus 535 i~~V~Qd~~LF~g-TIreNI~~g~~-----~~~d----e~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~-LSGGQrQR 603 (617)
++||||+|.+|.+ |++||+.++.. .... +++.++++..++. ++-.+..+ .. ||||||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~------~~~~~~~~----~~~LSgGqkQr 151 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWD------ESYLSRYL----NEGFSGGEKKR 151 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCC------GGGGGSBT----TCC----HHHH
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCC------hhHhcCCc----ccCCCHHHHHH
Confidence 9999999999975 99999976420 1121 2333444444331 01122222 34 99999999
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
++|||||+++|++|
T Consensus 152 v~iAraL~~~p~ll 165 (250)
T 2d2e_A 152 NEILQLLVLEPTYA 165 (250)
T ss_dssp HHHHHHHHHCCSEE
T ss_pred HHHHHHHHcCCCEE
Confidence 99999999999975
No 45
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=8.8e-32 Score=271.55 Aligned_cols=142 Identities=23% Similarity=0.340 Sum_probs=121.0
Q ss_pred eEEEeEEEeecCC---cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 007122 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (617)
Q Consensus 459 I~~~nvsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i 535 (617)
|+++||+++|++. +++|+|+||+|+ ||+++|+||||||||||+++|+|++ |++|+|.++|.++.+. .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999742 689999999999 9999999999999999999999999 9999999999998765 33 7789
Q ss_pred E-EEccCCCcccccHHHHHhcCCC--CCCHHHHHHHHHHHcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHHh
Q 007122 536 G-VVPQDTVLFNDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYS-TVVGERGLKLSGGEKQRVALARAFL 611 (617)
Q Consensus 536 ~-~V~Qd~~LF~gTIreNI~~g~~--~~~de~i~~a~~~a~l~~~I~~lp~Gld-T~vge~G~~LSGGQrQRlaiARAll 611 (617)
+ ||||++.+ +.|++||+.++.+ +..++++.++++..+ ++ ........+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALK-----------LGEEILRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTT-----------CCGGGGGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcC-----------CChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999999 9999999987532 334555655555544 43 4455667899999999999999999
Q ss_pred CCCCCC
Q 007122 612 KAPPIL 617 (617)
Q Consensus 612 ~~p~IL 617 (617)
++|++|
T Consensus 145 ~~p~ll 150 (263)
T 2pjz_A 145 SQPEIV 150 (263)
T ss_dssp TCCSEE
T ss_pred hCCCEE
Confidence 999975
No 46
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.97 E-value=1.2e-31 Score=269.53 Aligned_cols=136 Identities=26% Similarity=0.398 Sum_probs=113.2
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.|+++||+++|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++++++|
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~~ 70 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIGF 70 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEEE
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEEE
Confidence 489999999996346899999999999999999999999999999999999999999998 3568999
Q ss_pred EccCCCcc-cccHHHHHhcCCC---C----CC---HHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 007122 538 VPQDTVLF-NDTIFHNIRYGRL---S----AT---EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606 (617)
Q Consensus 538 V~Qd~~LF-~gTIreNI~~g~~---~----~~---de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlai 606 (617)
|||++.+| ..|++||+.++.. . .. ++++.++++..++.+ .......+||||||||++|
T Consensus 71 v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~l 139 (253)
T 2nq2_C 71 VPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTH-----------LAKREFTSLSGGQRQLILI 139 (253)
T ss_dssp ECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGG-----------GTTSBGGGSCHHHHHHHHH
T ss_pred EcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChH-----------HhcCChhhCCHHHHHHHHH
Confidence 99999988 6799999988631 0 12 233555555555443 2334567899999999999
Q ss_pred HHHHhCCCCCC
Q 007122 607 ARAFLKAPPIL 617 (617)
Q Consensus 607 ARAll~~p~IL 617 (617)
||||+++|++|
T Consensus 140 AraL~~~p~ll 150 (253)
T 2nq2_C 140 ARAIASECKLI 150 (253)
T ss_dssp HHHHHTTCSEE
T ss_pred HHHHHcCCCEE
Confidence 99999999985
No 47
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.97 E-value=8.5e-31 Score=265.48 Aligned_cols=152 Identities=24% Similarity=0.332 Sum_probs=119.7
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcC--CCCCCCeEEECCEeCCCCCHHHH-hcc
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--FDTHSGSIRIDGQDICEVTLESL-RKS 534 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl--~~p~~G~I~idG~~i~~~~~~~l-r~~ 534 (617)
.|+++||+|+|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|.++.+.+...+ +..
T Consensus 20 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 98 (267)
T 2zu0_C 20 MLSIKDLHVSVE-DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEG 98 (267)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHT
T ss_pred eEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCC
Confidence 599999999995 46899999999999999999999999999999999999 57999999999999988887665 456
Q ss_pred eEEEccCCCcccc-cHHHHHhcCC---------CCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCC-C-CCChHHHH
Q 007122 535 IGVVPQDTVLFND-TIFHNIRYGR---------LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG-L-KLSGGEKQ 602 (617)
Q Consensus 535 i~~V~Qd~~LF~g-TIreNI~~g~---------~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G-~-~LSGGQrQ 602 (617)
++||+|++.+|.+ |++||+.++. +..++++..+ .+.+.++.+ |+++...++. . +|||||||
T Consensus 99 i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGq~Q 171 (267)
T 2zu0_C 99 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQD-----LMEEKIALL--KMPEDLLTRSVNVGFSGGEKK 171 (267)
T ss_dssp EEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHH-----HHHHHHHHT--TCCTTTTTSBTTTTCCHHHHH
T ss_pred EEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHHHH
Confidence 9999999999876 8999986531 1123322211 122333332 3443333333 2 59999999
Q ss_pred HHHHHHHHhCCCCCC
Q 007122 603 RVALARAFLKAPPIL 617 (617)
Q Consensus 603 RlaiARAll~~p~IL 617 (617)
|++|||||+++|+||
T Consensus 172 Rv~iAraL~~~p~lL 186 (267)
T 2zu0_C 172 RNDILQMAVLEPELC 186 (267)
T ss_dssp HHHHHHHHHHCCSEE
T ss_pred HHHHHHHHHhCCCEE
Confidence 999999999999985
No 48
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.96 E-value=1.7e-33 Score=288.42 Aligned_cols=184 Identities=15% Similarity=0.163 Sum_probs=153.3
Q ss_pred HHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCcceEEEeEEEe
Q 007122 388 GILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFS 467 (617)
Q Consensus 388 ~v~~g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~nvsF~ 467 (617)
....+..+-+.+.+|+.+..+ ..|+..+...+..++++..+.+|+.++++.+++...... ..+...+.|+++||+|+
T Consensus 34 ~~a~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~--~~~~~~~~i~~~~vs~~ 110 (305)
T 2v9p_A 34 EYALAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEG--SWKSILTFFNYQNIELI 110 (305)
T ss_dssp HHHHTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSC--CTHHHHHHHHHTTCCHH
T ss_pred HHHHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC--cccccCCeEEEEEEEEE
Confidence 334566777888888887777 489999999999999999999999999987554322111 11111235999999999
Q ss_pred ecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccc
Q 007122 468 YLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND 547 (617)
Q Consensus 468 Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~g 547 (617)
|+ .++|+|+||+|++|++++||||||||||||+++|+|++ +|+| +++|+|++++|.+
T Consensus 111 y~--~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ 167 (305)
T 2v9p_A 111 TF--INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLA 167 (305)
T ss_dssp HH--HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGG
T ss_pred cC--hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccc
Confidence 97 68999999999999999999999999999999999999 8998 4678999999999
Q ss_pred cHHH-HHhcCCCCCCHHHHHHHHHHHcHHHHHHh-CCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 548 TIFH-NIRYGRLSATEEEVYDAARRAAIHDTIMN-FPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 548 TIre-NI~~g~~~~~de~i~~a~~~a~l~~~I~~-lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
|++| ||.++ ++.++ +++++++. ||+|+| |.+|||||||| |||++++|+||
T Consensus 168 ti~~~ni~~~-~~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iL 219 (305)
T 2v9p_A 168 SLADTRAALV-DDATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLL 219 (305)
T ss_dssp GGTTCSCEEE-EEECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEE
T ss_pred cHHHHhhccC-ccccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEE
Confidence 9998 99987 34443 45678888 999998 78999999999 99999999986
No 49
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.90 E-value=1.4e-26 Score=218.23 Aligned_cols=110 Identities=20% Similarity=0.283 Sum_probs=89.1
Q ss_pred cEEEEECCCcchHHHHHHHHhcCCCCC---CCeEEECCEeCCCCC---HHHHh-cceE----EEccCCCcccccHHHHHh
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQDICEVT---LESLR-KSIG----VVPQDTVLFNDTIFHNIR 554 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl~~p~---~G~I~idG~~i~~~~---~~~lr-~~i~----~V~Qd~~LF~gTIreNI~ 554 (617)
++++|||+||||||||+++|+|+|+|+ .|+|.+||.++.+++ .+.+| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999988887 67888 5788 899999988 221
Q ss_pred cCCCCCCHHHHHHHHHHHcHHHHHHh-CCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCC
Q 007122 555 YGRLSATEEEVYDAARRAAIHDTIMN-FPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPI 616 (617)
Q Consensus 555 ~g~~~~~de~i~~a~~~a~l~~~I~~-lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~I 616 (617)
+ + ++. .++++++++. +| |+||.|+|+ |||||||||+||||++++|+|
T Consensus 77 -~----~-~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 77 -V----S-EEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp -C----C-HHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGG
T ss_pred -C----C-hhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCcc
Confidence 1 1 222 7799999999 99 999999995 999999999999999999986
No 50
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.89 E-value=9.1e-24 Score=244.45 Aligned_cols=85 Identities=21% Similarity=0.397 Sum_probs=72.1
Q ss_pred ceEEEeEEEeecC-CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 007122 458 SIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (617)
Q Consensus 458 ~I~~~nvsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~ 536 (617)
-|+++|++|+|++ ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|. .+++
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I~ 739 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRIA 739 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCEE
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cceE
Confidence 4999999999975 368999999999999999999999999999999999999999999999862 1488
Q ss_pred EEccCCCc-----ccccHHHHH
Q 007122 537 VVPQDTVL-----FNDTIFHNI 553 (617)
Q Consensus 537 ~V~Qd~~L-----F~gTIreNI 553 (617)
||+|++.. ++.|+++|+
T Consensus 740 yv~Q~~~~~l~~~~~~t~~e~i 761 (986)
T 2iw3_A 740 YIKQHAFAHIESHLDKTPSEYI 761 (986)
T ss_dssp EECHHHHHHGGGCTTSCHHHHH
T ss_pred eeccchhhhhhcccccCHHHHH
Confidence 88887631 234555555
No 51
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.88 E-value=1.3e-23 Score=232.35 Aligned_cols=136 Identities=20% Similarity=0.282 Sum_probs=109.0
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~ 536 (617)
..++++|++++|.+ ..|++.||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. .++
T Consensus 268 ~~l~~~~l~~~~~~--~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~i~ 333 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD--FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------------ILS 333 (538)
T ss_dssp EEEEECCEEEEETT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------------CEE
T ss_pred ceEEEcceEEEECC--EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------------eeE
Confidence 36899999999964 4688889999999999999999999999999999999999999998763 689
Q ss_pred EEccCCCc-ccccHHHHHhcCCCCC---CHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhC
Q 007122 537 VVPQDTVL-FNDTIFHNIRYGRLSA---TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612 (617)
Q Consensus 537 ~V~Qd~~L-F~gTIreNI~~g~~~~---~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~ 612 (617)
|+||++.. |..|++||+.+..... ..+.+.++++..++. ........+||||||||++|||||++
T Consensus 334 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSGGq~QRv~iAraL~~ 402 (538)
T 3ozx_A 334 YKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLH-----------RLLESNVNDLSGGELQKLYIAATLAK 402 (538)
T ss_dssp EECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGG-----------GCTTSBGGGCCHHHHHHHHHHHHHHS
T ss_pred eechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCH-----------HHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 99999864 5889999997643221 223344444444443 23344556899999999999999999
Q ss_pred CCCCC
Q 007122 613 APPIL 617 (617)
Q Consensus 613 ~p~IL 617 (617)
+|+||
T Consensus 403 ~p~lL 407 (538)
T 3ozx_A 403 EADLY 407 (538)
T ss_dssp CCSEE
T ss_pred CCCEE
Confidence 99985
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.88 E-value=1.9e-23 Score=233.88 Aligned_cols=134 Identities=22% Similarity=0.295 Sum_probs=106.1
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++ .+++|
T Consensus 357 ~l~~~~l~~~~~~--~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~~i~~ 421 (607)
T 3bk7_A 357 LVEYPRLVKDYGS--FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTVAY 421 (607)
T ss_dssp EEEECCEEEECSS--CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------CCEEE
T ss_pred EEEEeceEEEecc--eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------eEEEE
Confidence 5899999999964 36899999999999999999999999999999999999999999862 36999
Q ss_pred EccCCCc-ccccHHHHHhcC-CCCC-CHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCC
Q 007122 538 VPQDTVL-FNDTIFHNIRYG-RLSA-TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (617)
Q Consensus 538 V~Qd~~L-F~gTIreNI~~g-~~~~-~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p 614 (617)
|||++.+ ++.|+.||+... .+.. .++.+.++++..++. ......-.+||||||||++|||||+++|
T Consensus 422 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSGGe~QRv~iAraL~~~p 490 (607)
T 3bk7_A 422 KPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII-----------DLYDRNVEDLSGGELQRVAIAATLLRDA 490 (607)
T ss_dssp ECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT-----------TTTTSBGGGCCHHHHHHHHHHHHHTSCC
T ss_pred EecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc-----------hHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 9999876 678999998653 1111 123344444444332 2223344679999999999999999999
Q ss_pred CCC
Q 007122 615 PIL 617 (617)
Q Consensus 615 ~IL 617 (617)
++|
T Consensus 491 ~lL 493 (607)
T 3bk7_A 491 DIY 493 (607)
T ss_dssp SEE
T ss_pred CEE
Confidence 975
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.88 E-value=2.2e-23 Score=231.06 Aligned_cols=134 Identities=22% Similarity=0.279 Sum_probs=105.4
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
.++++|++++|.+ ..|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.++ .+|+|
T Consensus 287 ~l~~~~l~~~~~~--~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-------------~~i~~ 351 (538)
T 1yqt_A 287 LVTYPRLVKDYGS--FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-------------LTVAY 351 (538)
T ss_dssp EEEECCEEEEETT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-------------CCEEE
T ss_pred EEEEeeEEEEECC--EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-------------ceEEE
Confidence 5899999999953 46899999999999999999999999999999999999999999862 36999
Q ss_pred EccCCCc-ccccHHHHHhcC-CCCC-CHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCC
Q 007122 538 VPQDTVL-FNDTIFHNIRYG-RLSA-TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (617)
Q Consensus 538 V~Qd~~L-F~gTIreNI~~g-~~~~-~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p 614 (617)
|||++.. ++.|+.||+... .+.. .++.+.++++.. |+.......-..||||||||++|||||+.+|
T Consensus 352 v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p 420 (538)
T 1yqt_A 352 KPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPL-----------GIIDLYDREVNELSGGELQRVAIAATLLRDA 420 (538)
T ss_dssp ECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTT-----------TCGGGTTSBGGGCCHHHHHHHHHHHHHTSCC
T ss_pred EecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc-----------CChhhhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 9999876 678999998643 1111 122222222222 3333344556689999999999999999999
Q ss_pred CCC
Q 007122 615 PIL 617 (617)
Q Consensus 615 ~IL 617 (617)
++|
T Consensus 421 ~lL 423 (538)
T 1yqt_A 421 DIY 423 (538)
T ss_dssp SEE
T ss_pred CEE
Confidence 975
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.87 E-value=1.1e-23 Score=235.88 Aligned_cols=145 Identities=21% Similarity=0.258 Sum_probs=109.8
Q ss_pred ceEE--------EeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeE---------EECC
Q 007122 458 SIQF--------DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI---------RIDG 520 (617)
Q Consensus 458 ~I~~--------~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I---------~idG 520 (617)
.|++ +||+++|++...+|+|+| +|++||++||+||||||||||+++|+|+++|++|++ .++|
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTT
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCC
Confidence 4788 899999965436899999 999999999999999999999999999999999996 4566
Q ss_pred EeCCCCCHHH--HhcceEEEccCCC----cccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCC
Q 007122 521 QDICEVTLES--LRKSIGVVPQDTV----LFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGL 594 (617)
Q Consensus 521 ~~i~~~~~~~--lr~~i~~V~Qd~~----LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~ 594 (617)
.++.+..... .+..+++++|+.. ++.+|++||+.... ..+++.++++..++.+. .| ..-.
T Consensus 162 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~---~~~~~~~~L~~lgL~~~-------~~----~~~~ 227 (607)
T 3bk7_A 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD---EVGKFEEVVKELELENV-------LD----RELH 227 (607)
T ss_dssp STHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC---CSSCHHHHHHHTTCTTG-------GG----SBGG
T ss_pred EehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH---HHHHHHHHHHHcCCCch-------hC----CChh
Confidence 5543321111 2346889998743 45579999997532 12345566666655322 22 2345
Q ss_pred CCChHHHHHHHHHHHHhCCCCCC
Q 007122 595 KLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 595 ~LSGGQrQRlaiARAll~~p~IL 617 (617)
+||||||||++|||||+++|++|
T Consensus 228 ~LSGGekQRvaIAraL~~~P~lL 250 (607)
T 3bk7_A 228 QLSGGELQRVAIAAALLRKAHFY 250 (607)
T ss_dssp GCCHHHHHHHHHHHHHHSCCSEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCEE
Confidence 79999999999999999999985
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.86 E-value=2.7e-23 Score=230.26 Aligned_cols=144 Identities=23% Similarity=0.290 Sum_probs=105.3
Q ss_pred eEE-EeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeE---------EECCEeCCCCCH
Q 007122 459 IQF-DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI---------RIDGQDICEVTL 528 (617)
Q Consensus 459 I~~-~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I---------~idG~~i~~~~~ 528 (617)
.++ +||+++|++...+|+|+| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++.+...
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 455 589999975446899999 999999999999999999999999999999999996 456655433211
Q ss_pred HH--HhcceEEEccCCCc----ccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 007122 529 ES--LRKSIGVVPQDTVL----FNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQ 602 (617)
Q Consensus 529 ~~--lr~~i~~V~Qd~~L----F~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQ 602 (617)
.. .+..+++++|+..+ +.+|++||+.... ..+++.++++..++.+. .+. .-.+|||||||
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~---~~~~~~~~l~~lgl~~~-------~~~----~~~~LSgGekQ 165 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD---ETGKLEEVVKALELENV-------LER----EIQHLSGGELQ 165 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC---SSSCHHHHHHHTTCTTT-------TTS----BGGGCCHHHHH
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh---HHHHHHHHHHHcCCChh-------hhC----ChhhCCHHHHH
Confidence 11 13468899997544 3469999986421 12345566666655321 222 34579999999
Q ss_pred HHHHHHHHhCCCCCC
Q 007122 603 RVALARAFLKAPPIL 617 (617)
Q Consensus 603 RlaiARAll~~p~IL 617 (617)
|++|||||+.+|++|
T Consensus 166 Rv~iAraL~~~P~lL 180 (538)
T 1yqt_A 166 RVAIAAALLRNATFY 180 (538)
T ss_dssp HHHHHHHHHSCCSEE
T ss_pred HHHHHHHHhcCCCEE
Confidence 999999999999985
No 56
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.85 E-value=1.9e-25 Score=236.03 Aligned_cols=219 Identities=12% Similarity=0.043 Sum_probs=154.5
Q ss_pred HHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCC-CCCCcce---
Q 007122 385 CSHGILS-GEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPL-NLKGGSI--- 459 (617)
Q Consensus 385 ~~~~v~~-g~lt~G~l~~~~~~~~~l~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~-~~~~~~I--- 459 (617)
|.+.+.+ |.+|.|++.++..++..+..| .+......+..+..+.+|+.+++ ++..+........ ....+.+
T Consensus 55 G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~itl~ 130 (361)
T 2gza_A 55 SAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTRRTLE 130 (361)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCCCCHH
T ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCCCCHH
Confidence 4444454 789999999998887766655 22222222223334456666665 2211111000000 1112345
Q ss_pred ------EEEeEEEe---ecC-Ccccc---------eeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECC
Q 007122 460 ------QFDNVHFS---YLT-ERKIL---------DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (617)
Q Consensus 460 ------~~~nvsF~---Y~~-~~~vL---------~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG 520 (617)
+|+||+|+ |++ ++++| +++||+|++|+.++|+||||||||||+++|+|+++|++|.|.++|
T Consensus 131 ~l~~~g~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~ 210 (361)
T 2gza_A 131 DYAQQGFFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIED 210 (361)
T ss_dssp HHHHTTTTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEES
T ss_pred HHHhcCCcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECC
Confidence 89999999 974 34566 999999999999999999999999999999999999999999998
Q ss_pred EeCCCCCHHHHhcceEEEc-cCCCc---ccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCC
Q 007122 521 QDICEVTLESLRKSIGVVP-QDTVL---FNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKL 596 (617)
Q Consensus 521 ~~i~~~~~~~lr~~i~~V~-Qd~~L---F~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~L 596 (617)
. .++....+++++++++ |++.+ +..|+++||..+....+|..+..+++.++++++++.+|.|++|.+++-+.+-
T Consensus 211 ~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~ 288 (361)
T 2gza_A 211 V--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGS 288 (361)
T ss_dssp S--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSS
T ss_pred c--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 5 5666666788999999 99886 8999999998875544444444555667788899999999999999988888
Q ss_pred ChHHHHHHHHHHH
Q 007122 597 SGGEKQRVALARA 609 (617)
Q Consensus 597 SGGQrQRlaiARA 609 (617)
..+..+|++....
T Consensus 289 ~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 289 CELTFERLALMVL 301 (361)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987754
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.6e-21 Score=217.93 Aligned_cols=133 Identities=25% Similarity=0.331 Sum_probs=104.4
Q ss_pred EEeEEEeecCCcccceeeeEEEeCC-----cEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 007122 461 FDNVHFSYLTERKILDGVSFVVPAG-----KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (617)
Q Consensus 461 ~~nvsF~Y~~~~~vL~~isl~I~~G-----~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i 535 (617)
.++++|+|++...+++|+||++++| |+++|+||||||||||+++|+|+.+|++|+. +. +..+
T Consensus 349 ~~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i 415 (608)
T 3j16_B 349 SASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNV 415 (608)
T ss_dssp SSSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCE
T ss_pred ccceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcE
Confidence 3678899987667899999999999 7899999999999999999999999999973 11 2369
Q ss_pred EEEccCCC-cccccHHHHHhcCCC--CCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhC
Q 007122 536 GVVPQDTV-LFNDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612 (617)
Q Consensus 536 ~~V~Qd~~-LF~gTIreNI~~g~~--~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~ 612 (617)
+|+||++. .|..|++||+..... ....+...++++..++.+ .....-..||||||||++|||||..
T Consensus 416 ~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~-----------~~~~~~~~LSGGqkQRv~iAraL~~ 484 (608)
T 3j16_B 416 SMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDD-----------IIDQEVQHLSGGELQRVAIVLALGI 484 (608)
T ss_dssp EEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTT-----------TSSSBSSSCCHHHHHHHHHHHHTTS
T ss_pred EEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHHHHh
Confidence 99999965 568899999864211 123444555556555432 2233456799999999999999999
Q ss_pred CCCCC
Q 007122 613 APPIL 617 (617)
Q Consensus 613 ~p~IL 617 (617)
+|+||
T Consensus 485 ~p~lL 489 (608)
T 3j16_B 485 PADIY 489 (608)
T ss_dssp CCSEE
T ss_pred CCCEE
Confidence 99975
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.83 E-value=2.3e-20 Score=216.15 Aligned_cols=135 Identities=24% Similarity=0.328 Sum_probs=104.8
Q ss_pred CcceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 007122 456 GGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (617)
Q Consensus 456 ~~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i 535 (617)
+..|...|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+| |+| +|.+... +.++
T Consensus 433 ~~~L~~~~ls~~yg-~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~ 497 (986)
T 2iw3_A 433 GEDLCNCEFSLAYG-AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRT 497 (986)
T ss_dssp SCEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCE
T ss_pred cceeEEeeEEEEEC-CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeE
Confidence 34688889999996 4689999999999999999999999999999999996 554 5544321 1247
Q ss_pred EEEccCC-C-cccccHHHHHhcCCCCCCHHHHHHHHHHHcH-HHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhC
Q 007122 536 GVVPQDT-V-LFNDTIFHNIRYGRLSATEEEVYDAARRAAI-HDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612 (617)
Q Consensus 536 ~~V~Qd~-~-LF~gTIreNI~~g~~~~~de~i~~a~~~a~l-~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~ 612 (617)
+|++|++ . ..+.|+.||+.+..... ++++.++++..++ .+..++ .-..||||||||++|||||+.
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~-----------~~~~LSGGqkQRvaLArAL~~ 565 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAM-----------PISALSGGWKMKLALARAVLR 565 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHS-----------BGGGCCHHHHHHHHHHHHHHT
T ss_pred EEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcC-----------CcccCCHHHHHHHHHHHHHhc
Confidence 8999985 3 34669999997621112 6778888888877 333332 234699999999999999999
Q ss_pred CCCCC
Q 007122 613 APPIL 617 (617)
Q Consensus 613 ~p~IL 617 (617)
+|+||
T Consensus 566 ~P~lL 570 (986)
T 2iw3_A 566 NADIL 570 (986)
T ss_dssp TCSEE
T ss_pred CCCEE
Confidence 99985
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.81 E-value=4.5e-21 Score=214.38 Aligned_cols=142 Identities=22% Similarity=0.306 Sum_probs=101.1
Q ss_pred eEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeE-----------EECCEeCCCCCHHHH
Q 007122 463 NVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI-----------RIDGQDICEVTLESL 531 (617)
Q Consensus 463 nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I-----------~idG~~i~~~~~~~l 531 (617)
|++++|.+....|++++ ++++||++||+||||||||||+|+|+|+++|++|+| .++|.++.++....+
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence 56888976656788777 689999999999999999999999999999999998 344544433333333
Q ss_pred hcceE--EEccCCCc----cc---ccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 007122 532 RKSIG--VVPQDTVL----FN---DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQ 602 (617)
Q Consensus 532 r~~i~--~V~Qd~~L----F~---gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQ 602 (617)
.+.+. +.+|.... +. .++.+++.... ...++++.++++..++.+. ....-..|||||||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGe~Q 228 (608)
T 3j16_B 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM-EKSPEDVKRYIKILQLENV-----------LKRDIEKLSGGELQ 228 (608)
T ss_dssp HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC-CSCHHHHHHHHHHHTCTGG-----------GGSCTTTCCHHHHH
T ss_pred HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh-hhHHHHHHHHHHHcCCcch-----------hCCChHHCCHHHHH
Confidence 44433 33443221 11 26777765433 2345677777777766433 23344689999999
Q ss_pred HHHHHHHHhCCCCCC
Q 007122 603 RVALARAFLKAPPIL 617 (617)
Q Consensus 603 RlaiARAll~~p~IL 617 (617)
|++|||||+++|++|
T Consensus 229 rv~iAraL~~~p~ll 243 (608)
T 3j16_B 229 RFAIGMSCVQEADVY 243 (608)
T ss_dssp HHHHHHHHHSCCSEE
T ss_pred HHHHHHHHHhCCCEE
Confidence 999999999999975
No 60
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.81 E-value=5.1e-24 Score=231.04 Aligned_cols=130 Identities=16% Similarity=0.096 Sum_probs=102.4
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCC-e-EEECCEeCCCCCHHHHhcc
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG-S-IRIDGQDICEVTLESLRKS 534 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G-~-I~idG~~i~~~~~~~lr~~ 534 (617)
..|+++||+|+|+ ++||++++|++++|+||||||||||+|+|+|++.|++| + |++|| +.++.
T Consensus 117 ~mi~~~nl~~~y~-------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg---------~~~~~ 180 (460)
T 2npi_A 117 TMKYIYNLHFMLE-------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL---------DPQQP 180 (460)
T ss_dssp THHHHHHHHHHHH-------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC---------CTTSC
T ss_pred chhhhhhhhehhh-------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC---------CccCC
Confidence 3588888888884 79999999999999999999999999999999999999 9 99998 13678
Q ss_pred eEEEccCCCccc----ccHHHHHhcCCCC---C-CHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 007122 535 IGVVPQDTVLFN----DTIFHNIRYGRLS---A-TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606 (617)
Q Consensus 535 i~~V~Qd~~LF~----gTIreNI~~g~~~---~-~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlai 606 (617)
+++|||++.+|. .|++||+ ++... . .++.+.++++.. |++.... ..+||||||||++|
T Consensus 181 i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~-----------gl~~~~~--~~~LSgGq~qrlal 246 (460)
T 2npi_A 181 IFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNF-----------GLERINE--NKDLYLECISQLGQ 246 (460)
T ss_dssp SSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCC-----------CSSSGGG--CHHHHHHHHHHHHH
T ss_pred eeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHh-----------CCCcccc--hhhhhHHHHHHHHH
Confidence 999999996554 5899999 75321 1 111122222222 4444332 67899999999999
Q ss_pred HHH--HhCCCCC
Q 007122 607 ARA--FLKAPPI 616 (617)
Q Consensus 607 ARA--ll~~p~I 616 (617)
||| |+.+|++
T Consensus 247 Ara~rL~~~p~i 258 (460)
T 2npi_A 247 VVGQRLHLDPQV 258 (460)
T ss_dssp HHHHHHHHCHHH
T ss_pred HHHHHhccCccc
Confidence 999 9999986
No 61
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.78 E-value=6.8e-20 Score=209.10 Aligned_cols=138 Identities=24% Similarity=0.323 Sum_probs=75.3
Q ss_pred CcccceeeeEEEeCCcEEEEECCCcchHHHHH---------------------HHHhcCCCCC-------CCeEEECCEe
Q 007122 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTIL---------------------RLLFRSFDTH-------SGSIRIDGQD 522 (617)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~---------------------~LL~gl~~p~-------~G~I~idG~~ 522 (617)
..++|+|+||+|++||++||+||||||||||+ +++.|+..|+ .|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45799999999999999999999999999998 8999999998 5566666655
Q ss_pred CCCCCHHHHhcceEEEccCCCcc--------------------cccHHHHHhcCCC-CCCH--HHH-----HHHHHHHcH
Q 007122 523 ICEVTLESLRKSIGVVPQDTVLF--------------------NDTIFHNIRYGRL-SATE--EEV-----YDAARRAAI 574 (617)
Q Consensus 523 i~~~~~~~lr~~i~~V~Qd~~LF--------------------~gTIreNI~~g~~-~~~d--e~i-----~~a~~~a~l 574 (617)
... ..+..+++|+|.+.++ ..|++||+.+... ...+ .+. .++.+..
T Consensus 110 ~~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 183 (670)
T 3ux8_A 110 TSR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-- 183 (670)
T ss_dssp ---------CCBHHHHTTCC-------------------------CC--------------------------CHHHH--
T ss_pred hhc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH--
Confidence 432 2345677777765443 4589999987421 1111 111 1111222
Q ss_pred HHHHHhCCCCcccc-ccCCCCCCChHHHHHHHHHHHHhCCCC--CC
Q 007122 575 HDTIMNFPAKYSTV-VGERGLKLSGGEKQRVALARAFLKAPP--IL 617 (617)
Q Consensus 575 ~~~I~~lp~GldT~-vge~G~~LSGGQrQRlaiARAll~~p~--IL 617 (617)
+.++.+ |++.. .......||||||||++|||||+.+|+ +|
T Consensus 184 -~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lL 226 (670)
T 3ux8_A 184 -GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLY 226 (670)
T ss_dssp -HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEE
T ss_pred -HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEE
Confidence 123332 22211 233456799999999999999999997 64
No 62
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.78 E-value=1.8e-22 Score=208.61 Aligned_cols=129 Identities=16% Similarity=0.207 Sum_probs=102.0
Q ss_pred CcceEEEeEEEeecCCcccceeeeEE-----------------------EeCCcEEEEECCCcchHHHHHHHHhcCCCCC
Q 007122 456 GGSIQFDNVHFSYLTERKILDGVSFV-----------------------VPAGKSVAIVGTSGSGKSTILRLLFRSFDTH 512 (617)
Q Consensus 456 ~~~I~~~nvsF~Y~~~~~vL~~isl~-----------------------I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~ 512 (617)
++.|+++||++.|. |+++++++. +++|+++||+|+||||||||+++|+|+++|+
T Consensus 41 ~~~i~~~~v~~~y~---p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 41 GEQIDLLEVEEVYL---PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp TCCCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred CCeEEeeehhhhhh---hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 34799999999994 667777664 8999999999999999999999999999998
Q ss_pred CCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCC----CCC-CHHHHHHHHHHHcHHHHHHhCCCCcc-
Q 007122 513 SGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGR----LSA-TEEEVYDAARRAAIHDTIMNFPAKYS- 586 (617)
Q Consensus 513 ~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~----~~~-~de~i~~a~~~a~l~~~I~~lp~Gld- 586 (617)
.|. .++++|+||++++..|++||+.+.. |+. +.+. +.++++.+..|..
T Consensus 118 ~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~---------~~~~L~~l~~~~~~ 171 (312)
T 3aez_A 118 DHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRA---------LMRFVTSVKSGSDY 171 (312)
T ss_dssp TTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHH---------HHHHHHHHHTTCSC
T ss_pred CCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHH---------HHHHHHHhCCCccc
Confidence 774 4799999999999999999997532 211 1222 3334444444443
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 587 TVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 587 T~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
..+ ..|||||+||+++|||++.+|+||
T Consensus 172 ~~~----~~lS~G~~qRv~~a~al~~~p~il 198 (312)
T 3aez_A 172 ACA----PVYSHLHYDIIPGAEQVVRHPDIL 198 (312)
T ss_dssp EEE----EEEETTTTEEEEEEEEEECSCSEE
T ss_pred CCc----ccCChhhhhhhhhHHHhccCCCEE
Confidence 333 479999999999999999999975
No 63
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.78 E-value=1.2e-21 Score=192.49 Aligned_cols=121 Identities=18% Similarity=0.228 Sum_probs=82.1
Q ss_pred ccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCH-HHHhcceEEEccCCCccc-----
Q 007122 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIGVVPQDTVLFN----- 546 (617)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~-~~lr~~i~~V~Qd~~LF~----- 546 (617)
.-|+|+||+|++|++++|+||||||||||+++|+|++ | |+|.+ |+++..... ...++.++|++|++.+|.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4699999999999999999999999999999999999 6 99999 877654432 235678999999876553
Q ss_pred ------ccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH-----HHHHhCCCC
Q 007122 547 ------DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL-----ARAFLKAPP 615 (617)
Q Consensus 547 ------gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlai-----ARAll~~p~ 615 (617)
+++.+| .+|. +++++.++++.. ....+. .+||||||||++| ||+++++|+
T Consensus 87 ~~~l~~~~~~~~-~~g~---~~~~i~~~l~~~------------~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~ 147 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGT---LKSEYDKAKEQN------------KICLFE---MNINGVKQLKKSTHIKNALYIFIKPPS 147 (218)
T ss_dssp TCEEEEEEETTE-EEEE---EHHHHHHHHHTT------------CEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred cchhhhhhcccc-cCCC---cHHHHHHHHhCC------------CcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence 445555 4443 244454444432 222232 6899999999999 899999987
Q ss_pred C
Q 007122 616 I 616 (617)
Q Consensus 616 I 616 (617)
+
T Consensus 148 ~ 148 (218)
T 1z6g_A 148 T 148 (218)
T ss_dssp H
T ss_pred H
Confidence 5
No 64
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.78 E-value=4.3e-20 Score=204.20 Aligned_cols=139 Identities=18% Similarity=0.258 Sum_probs=99.4
Q ss_pred eEEEeecCCcccceeeeEEE-eCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeE-----------EECCEeCCCCCHHH
Q 007122 463 NVHFSYLTERKILDGVSFVV-PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI-----------RIDGQDICEVTLES 530 (617)
Q Consensus 463 nvsF~Y~~~~~vL~~isl~I-~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I-----------~idG~~i~~~~~~~ 530 (617)
+++.+|..+. ++-..|.+ ++||.+||+||||||||||+|+|+|+++|++|+| .++|.++..+....
T Consensus 4 ~~~~~~~~~~--f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~ 81 (538)
T 3ozx_A 4 EVIHRYKVNG--FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81 (538)
T ss_dssp CEEEESSTTS--CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHH
T ss_pred CCceecCCCc--eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHH
Confidence 4667886543 45555545 4899999999999999999999999999999999 67776654332221
Q ss_pred H------hcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 007122 531 L------RKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (617)
Q Consensus 531 l------r~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRl 604 (617)
. ...+.+++|.+.++.+|++|++..... .+++.++++..++.+. .|. .-..||||||||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~---~~~~~~~l~~l~l~~~-------~~~----~~~~LSgGe~Qrv 147 (538)
T 3ozx_A 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDE---RGKKDEVKELLNMTNL-------WNK----DANILSGGGLQRL 147 (538)
T ss_dssp HTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCC---SSCHHHHHHHTTCGGG-------TTS----BGGGCCHHHHHHH
T ss_pred hhcccchhhccchhhhhhhhccCcHHHHhhcchh---HHHHHHHHHHcCCchh-------hcC----ChhhCCHHHHHHH
Confidence 1 223455666677788999998864321 2344556666655332 223 3356999999999
Q ss_pred HHHHHHhCCCCCC
Q 007122 605 ALARAFLKAPPIL 617 (617)
Q Consensus 605 aiARAll~~p~IL 617 (617)
+|||||+++|+||
T Consensus 148 ~iA~aL~~~p~il 160 (538)
T 3ozx_A 148 LVAASLLREADVY 160 (538)
T ss_dssp HHHHHHHSCCSEE
T ss_pred HHHHHHHcCCCEE
Confidence 9999999999985
No 65
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.76 E-value=2.2e-22 Score=209.84 Aligned_cols=159 Identities=12% Similarity=0.177 Sum_probs=109.6
Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcccccccCCCCCCCC-CCCCcceE---------E
Q 007122 393 EMTVGDLVMVNGLLFQLSLPLNFLGS-VYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPL-NLKGGSIQ---------F 461 (617)
Q Consensus 393 ~lt~G~l~~~~~~~~~l~~pl~~l~~-~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~-~~~~~~I~---------~ 461 (617)
.+|.|++.++..++..+..| .+.. ....+..+..+.+|+..+++.+.. +........ .+..+.++ |
T Consensus 75 ~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~-~~~~~~~~ir~~~~~~i~l~~l~~~g~~ 151 (330)
T 2pt7_A 75 AFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTV-NDETISISIRIPSKTTYPHSFFEEQGFY 151 (330)
T ss_dssp GGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSS-STTCCEEEEECCCCCCCCHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCcc-CCCCceEEEeCCCCCCCCHHHHHhCCCc
Confidence 68999999888776665543 1221 111122222334566555543221 110000000 11123456 7
Q ss_pred EeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccC
Q 007122 462 DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQD 541 (617)
Q Consensus 462 ~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd 541 (617)
+|++| | ++++++++++|++|+.++|+|+||||||||+++|+|+++|++|.|.++|.+ ++....+++++++++|
T Consensus 152 ~~v~f-y---~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~~g- 224 (330)
T 2pt7_A 152 NLLDN-K---EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLFFG- 224 (330)
T ss_dssp TTSTT-H---HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEECB-
T ss_pred Cchhh-H---HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEEeC-
Confidence 78888 7 579999999999999999999999999999999999999999999999975 3433345666776641
Q ss_pred CCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 542 TVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 542 ~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
|||+||++|||||.++|++|
T Consensus 225 --------------------------------------------------------gg~~~r~~la~aL~~~p~il 244 (330)
T 2pt7_A 225 --------------------------------------------------------GNITSADCLKSCLRMRPDRI 244 (330)
T ss_dssp --------------------------------------------------------TTBCHHHHHHHHTTSCCSEE
T ss_pred --------------------------------------------------------CChhHHHHHHHHhhhCCCEE
Confidence 89999999999999999974
No 66
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.75 E-value=1.8e-19 Score=205.73 Aligned_cols=134 Identities=25% Similarity=0.362 Sum_probs=86.1
Q ss_pred CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHh---------------------cCCCCCCCeEEECCEeCCCCCHH
Q 007122 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF---------------------RSFDTHSGSIRIDGQDICEVTLE 529 (617)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~---------------------gl~~p~~G~I~idG~~i~~~~~~ 529 (617)
..++|+|+||+|++||++||+||||||||||+++++ +-+.+.+|.|.++|.++...+..
T Consensus 334 ~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 334 REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTC
T ss_pred cccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCc
Confidence 357899999999999999999999999999998754 11234456899999888654421
Q ss_pred HHhc-----------------------------------------ceEEEccCCCcc-----------------------
Q 007122 530 SLRK-----------------------------------------SIGVVPQDTVLF----------------------- 545 (617)
Q Consensus 530 ~lr~-----------------------------------------~i~~V~Qd~~LF----------------------- 545 (617)
..+. ..+++.|+..++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 1111 123333333222
Q ss_pred ----------cccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHHhCCC
Q 007122 546 ----------NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYS-TVVGERGLKLSGGEKQRVALARAFLKAP 614 (617)
Q Consensus 546 ----------~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~Gld-T~vge~G~~LSGGQrQRlaiARAll~~p 614 (617)
+.|++||+.+.......++..++ +..+ |+. ........+||||||||++|||||+++|
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p 562 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASIPKIKRKLET---------LYDV--GLGYMKLGQPATTLSGGEAQRVKLAAELHRRS 562 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTCHHHHHHHHH---------HHHT--TCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCC
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHhhhHHHHHHH---------HHHc--CCchhhccCCchhCCHHHHHHHHHHHHHhhCC
Confidence 35889999876421111222222 2232 222 2345677899999999999999999987
Q ss_pred C
Q 007122 615 P 615 (617)
Q Consensus 615 ~ 615 (617)
+
T Consensus 563 ~ 563 (670)
T 3ux8_A 563 N 563 (670)
T ss_dssp C
T ss_pred C
Confidence 4
No 67
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.74 E-value=1e-20 Score=190.68 Aligned_cols=144 Identities=23% Similarity=0.250 Sum_probs=116.8
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCC-CCeEEECCEeCCCCCHHHHhcceEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-SGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~-~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
++++|++|. ++|+|+| +++|+.++|+||||||||||+++|+|+++|+ +|+|.++|.++..+. +..+++
T Consensus 6 ~~l~~l~~~-----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~ 74 (261)
T 2eyu_A 6 PEFKKLGLP-----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSI 74 (261)
T ss_dssp CCGGGSSCC-----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSE
T ss_pred CChHHCCCH-----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCccee
Confidence 456677653 5899999 9999999999999999999999999999998 999999998876543 445678
Q ss_pred Ecc-----CCCcccccHHHHHhcCCCCC-------CHHHHHHHHHHHc-----------------HHHHH----------
Q 007122 538 VPQ-----DTVLFNDTIFHNIRYGRLSA-------TEEEVYDAARRAA-----------------IHDTI---------- 578 (617)
Q Consensus 538 V~Q-----d~~LF~gTIreNI~~g~~~~-------~de~i~~a~~~a~-----------------l~~~I---------- 578 (617)
++| ++..|..+|+.++.. +|+. +.+.+.++++.+. ++..+
T Consensus 75 v~q~~~gl~~~~l~~~la~aL~~-~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~ 153 (261)
T 2eyu_A 75 VNQREVGEDTKSFADALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQ 153 (261)
T ss_dssp EEEEEBTTTBSCHHHHHHHHHHH-CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHH
T ss_pred eeHHHhCCCHHHHHHHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccch
Confidence 888 777788999999987 4554 7777777666542 12222
Q ss_pred --HhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCC
Q 007122 579 --MNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPI 616 (617)
Q Consensus 579 --~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~I 616 (617)
..+++++++.|++++..+||| ||+++||+++.+|+|
T Consensus 154 ~~~~l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i 191 (261)
T 2eyu_A 154 VRIVLSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAI 191 (261)
T ss_dssp HHHHHHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHH
T ss_pred HHHHHHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHH
Confidence 134678999999999999999 999999999999875
No 68
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.73 E-value=7.2e-21 Score=201.63 Aligned_cols=142 Identities=19% Similarity=0.264 Sum_probs=105.7
Q ss_pred cceeeeEEEeC--CcEEEEECCCcchHHHHHHHHhcCCCCCC----CeEEE----CCEeCCCCCHHHHhcceEEEccCCC
Q 007122 474 ILDGVSFVVPA--GKSVAIVGTSGSGKSTILRLLFRSFDTHS----GSIRI----DGQDICEVTLESLRKSIGVVPQDTV 543 (617)
Q Consensus 474 vL~~isl~I~~--G~~vaIVG~SGsGKSTL~~LL~gl~~p~~----G~I~i----dG~~i~~~~~~~lr~~i~~V~Qd~~ 543 (617)
+.+.++++|++ |++++|||+||||||||+++|+|+|+|++ |+|.+ +|.++ .++..++ .+|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45689999999 99999999999999999999999999999 99987 46565 5566666 56999999999
Q ss_pred cccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCC--cccc--------ccCCCCCCChHHHHHHHHHHHH---
Q 007122 544 LFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAK--YSTV--------VGERGLKLSGGEKQRVALARAF--- 610 (617)
Q Consensus 544 LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~G--ldT~--------vge~G~~LSGGQrQRlaiARAl--- 610 (617)
+|.+|++|||.+++.+..+..++.........+++..++.+ ++.. ..++|.++|+||+||++++|+|
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l 314 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKL 314 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHH
T ss_pred HHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHH
Confidence 99999999999987655566666655554555666666543 4442 2367889999999999999999
Q ss_pred hC--CCCCC
Q 007122 611 LK--APPIL 617 (617)
Q Consensus 611 l~--~p~IL 617 (617)
++ +++|+
T Consensus 315 ~~~~~~~il 323 (365)
T 1lw7_A 315 LDKYKVPYI 323 (365)
T ss_dssp HHGGGCCCE
T ss_pred HHHcCCCEE
Confidence 76 67664
No 69
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.73 E-value=8.4e-21 Score=184.68 Aligned_cols=114 Identities=16% Similarity=0.163 Sum_probs=74.4
Q ss_pred CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHH
Q 007122 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIF 550 (617)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIr 550 (617)
++++|+|+ ++||+++|+||||||||||+++|+|+ +|++|+|.. .++.. +...++++++||||++ +
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~-~~~~~~~~ig~v~q~~-------~ 76 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTR-PAVEAGEKLGFLPGTL-------N 76 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEE-CSCCTTCCCCSSCC----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecC-CchhhhcceEEecCCH-------H
Confidence 34689985 89999999999999999999999999 999999953 33321 2234678899999998 6
Q ss_pred HHH-hcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 551 HNI-RYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 551 eNI-~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
||+ .++.+. .+.+........+.+.++. |+ |||||++|||||+.+|++|
T Consensus 77 enl~~~~~~~--~~~~~~~~~~~~~~~~l~~---gl-------------Gq~qrv~lAraL~~~p~ll 126 (208)
T 3b85_A 77 EKIDPYLRPL--HDALRDMVEPEVIPKLMEA---GI-------------VEVAPLAYMRGRTLNDAFV 126 (208)
T ss_dssp ---CTTTHHH--HHHHTTTSCTTHHHHHHHT---TS-------------EEEEEGGGGTTCCBCSEEE
T ss_pred HHHHHHHHHH--HHHHHHhccHHHHHHHHHh---CC-------------chHHHHHHHHHHhcCCCEE
Confidence 777 443110 0000000001122233322 22 9999999999999999975
No 70
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.72 E-value=5.2e-18 Score=182.70 Aligned_cols=83 Identities=17% Similarity=0.199 Sum_probs=70.9
Q ss_pred ccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC--------------------------------------CCCC
Q 007122 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD--------------------------------------THSG 514 (617)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~--------------------------------------p~~G 514 (617)
.++++++|++++| +++|||+||||||||+++|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4789999999999 999999999999999999966653 4578
Q ss_pred eEEECCEeCCCCCHHHHhcc-eEEEccCCCcccccHHHHHhcC
Q 007122 515 SIRIDGQDICEVTLESLRKS-IGVVPQDTVLFNDTIFHNIRYG 556 (617)
Q Consensus 515 ~I~idG~~i~~~~~~~lr~~-i~~V~Qd~~LF~gTIreNI~~g 556 (617)
++++||.++...+..++.+. +++++|++.++-.+-.++..+-
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~l 170 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLL 170 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHH
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHH
Confidence 99999999987777787777 8999999998887776665543
No 71
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.70 E-value=1.2e-19 Score=192.30 Aligned_cols=135 Identities=22% Similarity=0.237 Sum_probs=113.0
Q ss_pred ccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCC-CCeEEECCEeCCCCCHHHHhcceEEEcc-----CCCccc
Q 007122 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-SGSIRIDGQDICEVTLESLRKSIGVVPQ-----DTVLFN 546 (617)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~-~G~I~idG~~i~~~~~~~lr~~i~~V~Q-----d~~LF~ 546 (617)
++|++++ +++|+.++|+|||||||||++++|+|+++|+ +|+|.+.|.++. + .+++++++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 4677765 8999999999999999999999999999998 999987776654 2 36778999999 999999
Q ss_pred ccHHHHHhcCCCCC-------CHHHHHHHHHHHcH-----------------HHHH------------HhCCCCcccccc
Q 007122 547 DTIFHNIRYGRLSA-------TEEEVYDAARRAAI-----------------HDTI------------MNFPAKYSTVVG 590 (617)
Q Consensus 547 gTIreNI~~g~~~~-------~de~i~~a~~~a~l-----------------~~~I------------~~lp~GldT~vg 590 (617)
++|++|+.. +|+. ++++++.+++.++. +..+ ..+++++++.|+
T Consensus 200 ~~l~~~L~~-~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~ 278 (372)
T 2ewv_A 200 DALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 278 (372)
T ss_dssp HHHHHHTTS-CCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHhhh-CcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEE
Confidence 999999987 5666 77878888887643 1221 124679999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCCCC
Q 007122 591 ERGLKLSGGEKQRVALARAFLKAPPI 616 (617)
Q Consensus 591 e~G~~LSGGQrQRlaiARAll~~p~I 616 (617)
+++..+||| ||+++||+++.+|+|
T Consensus 279 qrl~~~~~G--~R~~i~e~l~~~~~i 302 (372)
T 2ewv_A 279 QRLLPKIGG--GRVLAYELLIPNTAI 302 (372)
T ss_dssp EEEEECSSS--SEEEEEEECCCCSHH
T ss_pred EEeEecCCC--CEEEEEEEeeCCHHH
Confidence 999999999 999999999999975
No 72
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.67 E-value=2.6e-18 Score=185.26 Aligned_cols=135 Identities=15% Similarity=0.225 Sum_probs=105.8
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCE---eCCCCC-----H
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ---DICEVT-----L 528 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~---~i~~~~-----~ 528 (617)
..++++|+++.|+.+.++|+++ |+|++|++++|+|+||||||||+++|+|+++|++|.|.++|. ++.++. .
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 4689999999997567899999 999999999999999999999999999999999999999998 554432 3
Q ss_pred HHHhcceEEEccC--CCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccc-cccCCCCCCChHHHHHHH
Q 007122 529 ESLRKSIGVVPQD--TVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYST-VVGERGLKLSGGEKQRVA 605 (617)
Q Consensus 529 ~~lr~~i~~V~Qd--~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT-~vge~G~~LSGGQrQRla 605 (617)
..+++.++||+|+ +....-|+.+|+.+. .+... . .|.+. .+-+...+||+|| ||++
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~------ae~~~------------~--~~~~v~~~ld~l~~lS~g~-qrvs 267 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRI------AEDFR------------D--RGQHVLLIMDSLTRYAMAQ-REIA 267 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHH------HHHHH------------T--TTCEEEEEEECHHHHHHHH-HHHH
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHH------HHHHH------------h--CCCCHHHHHHhHHHHHHHH-HHHH
Confidence 5688899999994 344567888888753 11111 0 11111 1124467899999 9999
Q ss_pred HHHHHhCCCCC
Q 007122 606 LARAFLKAPPI 616 (617)
Q Consensus 606 iARAll~~p~I 616 (617)
|| +++|++
T Consensus 268 lA---l~~p~~ 275 (438)
T 2dpy_A 268 LA---IGEPPA 275 (438)
T ss_dssp HH---TTCCCC
T ss_pred HH---hCCCcc
Confidence 99 888875
No 73
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.67 E-value=1.7e-19 Score=182.69 Aligned_cols=110 Identities=21% Similarity=0.249 Sum_probs=66.1
Q ss_pred EEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccc-cHHHHHhcCCCCCCHHHH
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNIRYGRLSATEEEV 565 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~g-TIreNI~~g~~~~~de~i 565 (617)
.+|||||||||||||+++|+|+..|++|+|.++|.++.. ...++.+++++|++.++.. |+.||+.||..... ++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~-~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN-ENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBC-TTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhccc-HHH
Confidence 489999999999999999999999999999999987743 3456789999999988855 99999999864221 222
Q ss_pred HHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh
Q 007122 566 YDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (617)
Q Consensus 566 ~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll 611 (617)
++.+......++-..++ ..||||||||+++|||+.
T Consensus 80 ~~~i~~~~~~~~~~~~~-----------~~LS~G~~qrv~iaRal~ 114 (270)
T 3sop_A 80 WEPIEKYINEQYEKFLK-----------EEVNIARKKRIPDTRVHC 114 (270)
T ss_dssp SHHHHHHHHHHHHHHHH-----------HHSCTTCCSSCCCCSCCE
T ss_pred HHHHHHHHHHHHHhhhH-----------HhcCcccchhhhhheeee
Confidence 22233222233333222 259999999999999975
No 74
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.67 E-value=4.5e-17 Score=188.56 Aligned_cols=133 Identities=26% Similarity=0.417 Sum_probs=89.7
Q ss_pred cccceeeeEEEeCCcEEEEECCCcchHHHHH---------HHHhcCCCCC------CCe------EEECCEeCCCCCH--
Q 007122 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTIL---------RLLFRSFDTH------SGS------IRIDGQDICEVTL-- 528 (617)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~---------~LL~gl~~p~------~G~------I~idG~~i~~~~~-- 528 (617)
...|+|+||+|++|++++|+|+||||||||+ +++.+...+. +|. |.+|+.++.....
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 4579999999999999999999999999997 4444444333 332 4555555433211
Q ss_pred --------HHHh-------------------------------cceEEEccCCCcc------------------------
Q 007122 529 --------ESLR-------------------------------KSIGVVPQDTVLF------------------------ 545 (617)
Q Consensus 529 --------~~lr-------------------------------~~i~~V~Qd~~LF------------------------ 545 (617)
+..| +..|+++|+..++
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 0111 2357777776654
Q ss_pred ---------cccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCC
Q 007122 546 ---------NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (617)
Q Consensus 546 ---------~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p 614 (617)
+.|+.||+.+.......++..++++++++ |+ ..+|+.+.+|||||||||+|||||+++|
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~vGL---------~~-~~lgq~~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGL---------GY-VKLGQPATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHTTG---------GG-SBTTCCSTTCCHHHHHHHHHHHHHTSCC
T ss_pred ccCCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHcCC---------ch-hhccCCccCCCHHHHHHHHHHHHHhhCC
Confidence 34778888776432223334444444444 33 3478899999999999999999999986
No 75
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.67 E-value=1.4e-17 Score=191.16 Aligned_cols=46 Identities=33% Similarity=0.535 Sum_probs=41.1
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHH-HhcC
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRL-LFRS 508 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~L-L~gl 508 (617)
..|+++|+++ .+|+|+||+|++|+++||+|+||||||||++. |+|+
T Consensus 501 ~~L~v~~l~~------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~ 547 (842)
T 2vf7_A 501 GWLELNGVTR------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDA 547 (842)
T ss_dssp CEEEEEEEEE------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHH
T ss_pred ceEEEEeeee------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHH
Confidence 4699999986 26999999999999999999999999999996 6654
No 76
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.66 E-value=7.6e-19 Score=187.24 Aligned_cols=116 Identities=18% Similarity=0.244 Sum_probs=92.2
Q ss_pred cccceeeeEEEeCCc--------------------EEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHH
Q 007122 472 RKILDGVSFVVPAGK--------------------SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL 531 (617)
Q Consensus 472 ~~vL~~isl~I~~G~--------------------~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~l 531 (617)
+.+|+|+|++|++|+ .+||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 468999999999999 99999999999999999999999999999999998753
Q ss_pred hcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChH--HHHHHHHHHH
Q 007122 532 RKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGG--EKQRVALARA 609 (617)
Q Consensus 532 r~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGG--QrQRlaiARA 609 (617)
| .++++|++...+-|+.||+.++.+ ++.+.+.++..++.+ ++..+ . |||| ||||++||||
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~~---~~~~~~~L~~~~L~~--------~~~~~----~-lS~G~~~kqrv~la~a 170 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGST---NFPPDTYLEKMKFYE--------YDFFI----I-ISATRFKKNDIDIAKA 170 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGGS---SCCHHHHHHHTTGGG--------CSEEE----E-EESSCCCHHHHHHHHH
T ss_pred e--eEEeccccccCCeeehHhhcccch---HHHHHHHHHHcCCCc--------cCCeE----E-eCCCCccHHHHHHHHH
Confidence 1 278999986557899999887743 234555666665432 23222 2 8999 9999999999
Q ss_pred HhC
Q 007122 610 FLK 612 (617)
Q Consensus 610 ll~ 612 (617)
|.+
T Consensus 171 L~~ 173 (413)
T 1tq4_A 171 ISM 173 (413)
T ss_dssp HHH
T ss_pred HHh
Confidence 998
No 77
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.63 E-value=1.7e-16 Score=165.07 Aligned_cols=150 Identities=22% Similarity=0.259 Sum_probs=98.7
Q ss_pred ceEEEeEEE-eecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCC---------------------------
Q 007122 458 SIQFDNVHF-SYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF--------------------------- 509 (617)
Q Consensus 458 ~I~~~nvsF-~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~--------------------------- 509 (617)
.|+++| | +|. +++++++.+| .++|+|+||||||||+++|..+.
T Consensus 5 ~L~i~n--fr~~~------~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~ 75 (322)
T 1e69_A 5 KLYLKG--FKSFG------RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPA 75 (322)
T ss_dssp EEEEES--BTTBC------SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCC
T ss_pred EEEEeC--ceeec------CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCC
Confidence 577887 4 442 2568888899 99999999999999999998442
Q ss_pred -----------------------CCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcc-cccHHHHHhcCCCCC-----
Q 007122 510 -----------------------DTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF-NDTIFHNIRYGRLSA----- 560 (617)
Q Consensus 510 -----------------------~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF-~gTIreNI~~g~~~~----- 560 (617)
.+.+|++++||.+++.-+...+...+++.||+..++ .|++.+|+... |+.
T Consensus 76 ~~~~v~~~f~~~~~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~-p~~rr~~l 154 (322)
T 1e69_A 76 GSAYVELVFEENGEEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS-PEELRLES 154 (322)
T ss_dssp SEEEEEEEEESSSCEEEEEEEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC----------
T ss_pred ceEEEEEEEEeCCeEEEEEEEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc-HHHHHHHH
Confidence 344678999999986656667777899999998766 99999998753 210
Q ss_pred -----------CHHHHHHHHHHH------------cH-HHHHHhCCCCccccccC------CCCCCChHHHHHHHHHHHH
Q 007122 561 -----------TEEEVYDAARRA------------AI-HDTIMNFPAKYSTVVGE------RGLKLSGGEKQRVALARAF 610 (617)
Q Consensus 561 -----------~de~i~~a~~~a------------~l-~~~I~~lp~GldT~vge------~G~~LSGGQrQRlaiARAl 610 (617)
+.+++.+..... .+ .+..+.++.|+++.++. ....||||||||++|||||
T Consensus 155 d~~~~~~~~~~~y~rv~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l 234 (322)
T 1e69_A 155 SKHPTSLVPRGSYQRVNESFNRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLF 234 (322)
T ss_dssp ------------CHHHHHHHHHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHH
Confidence 001122221111 00 01113456677776542 3468999999999999999
Q ss_pred h----CCCCCC
Q 007122 611 L----KAPPIL 617 (617)
Q Consensus 611 l----~~p~IL 617 (617)
. ++|++|
T Consensus 235 ~~~~~~~~~~l 245 (322)
T 1e69_A 235 ALMEIKPSPFY 245 (322)
T ss_dssp HHTTTSCCSEE
T ss_pred HHhccCCCCEE
Confidence 6 788864
No 78
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.63 E-value=1.4e-16 Score=183.15 Aligned_cols=140 Identities=26% Similarity=0.362 Sum_probs=92.7
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHh-cCC-------CCCCC-------------eE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF-RSF-------DTHSG-------------SI 516 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~-gl~-------~p~~G-------------~I 516 (617)
.|+++|++. .+|+|+||+|++|++++|+|+||||||||++.|+ |.. .+..| .|
T Consensus 629 ~L~v~~l~~------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I 702 (972)
T 2r6f_A 629 WLEVVGARE------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVI 702 (972)
T ss_dssp EEEEEEECS------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEE
T ss_pred EEEEecCcc------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEE
Confidence 588888863 3699999999999999999999999999999854 211 12333 37
Q ss_pred EECCEeCCCCC---HH-------HHh---------cceEEEccCCCc---------------------------------
Q 007122 517 RIDGQDICEVT---LE-------SLR---------KSIGVVPQDTVL--------------------------------- 544 (617)
Q Consensus 517 ~idG~~i~~~~---~~-------~lr---------~~i~~V~Qd~~L--------------------------------- 544 (617)
.+||.++..-. +. ..| +.++|++|...+
T Consensus 703 ~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c 782 (972)
T 2r6f_A 703 DIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVC 782 (972)
T ss_dssp EECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTT
T ss_pred EEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccccc
Confidence 88888875321 11 111 346888875321
Q ss_pred ----------------------ccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccc-cccCCCCCCChHHH
Q 007122 545 ----------------------FNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYST-VVGERGLKLSGGEK 601 (617)
Q Consensus 545 ----------------------F~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT-~vge~G~~LSGGQr 601 (617)
.+.|+.||+.+... .. ++.+ ..+.++.+ |+.. ..+.....||||||
T Consensus 783 ~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~-~~--~~~~------~~~~L~~~--gL~~~~l~~~~~~LSGGek 851 (972)
T 2r6f_A 783 HGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS-IP--KIKR------KLETLYDV--GLGYMKLGQPATTLSGGEA 851 (972)
T ss_dssp TTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS-CH--HHHH------HHHHHHHT--TCSSSBTTCCGGGCCHHHH
T ss_pred ccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc-ch--hHHH------HHHHHHHc--CCCcccccCchhhCCHHHH
Confidence 02255666655431 11 1111 12344444 4444 56777889999999
Q ss_pred HHHHHHHHHhCCC
Q 007122 602 QRVALARAFLKAP 614 (617)
Q Consensus 602 QRlaiARAll~~p 614 (617)
|||+|||||+++|
T Consensus 852 QRv~LAraL~~~p 864 (972)
T 2r6f_A 852 QRVKLAAELHRRS 864 (972)
T ss_dssp HHHHHHHHHSSCC
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999875
No 79
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.62 E-value=1.1e-17 Score=158.61 Aligned_cols=97 Identities=20% Similarity=0.232 Sum_probs=69.7
Q ss_pred EEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHH
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVY 566 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~ 566 (617)
+++|+||||||||||+++|+|++. |.++|.+..+......+++++|++|++ |..+|+ ++.-.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~-~~~~~------- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKI-FSSKF------- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEE-EEETT-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHH-HHhhc-------
Confidence 689999999999999999999985 778887765543325678899999987 333343 11100
Q ss_pred HHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH-----HhCCCCCC
Q 007122 567 DAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA-----FLKAPPIL 617 (617)
Q Consensus 567 ~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARA-----ll~~p~IL 617 (617)
.+ .+..+++.+.+||||||||++|||| ++.+|++|
T Consensus 64 --------------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~ll 103 (178)
T 1ye8_A 64 --------------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVI 103 (178)
T ss_dssp --------------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred --------------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEE
Confidence 01 1145677788999999999999996 99999975
No 80
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.61 E-value=9.4e-17 Score=151.36 Aligned_cols=103 Identities=21% Similarity=0.304 Sum_probs=69.7
Q ss_pred eeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCC--cccccHHHHHh
Q 007122 477 GVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTV--LFNDTIFHNIR 554 (617)
Q Consensus 477 ~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~--LF~gTIreNI~ 554 (617)
|+||++++||.++|+||||||||||++++.+ |...+ +.+.+| ++++|++. .+.++..+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVI--------SSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEE--------ccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 22222 233444 67788763 22333222221
Q ss_pred cCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 555 YGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 555 ~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
.. ....+..|+.+.+... ...|||||||++||||+..+|++|
T Consensus 64 ----------------~~----~~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~l 105 (171)
T 4gp7_A 64 ----------------YI----VSKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAV 105 (171)
T ss_dssp ----------------HH----HHHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEE
T ss_pred ----------------HH----HHHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEE
Confidence 11 0112234666666544 456999999999999999999874
No 81
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.60 E-value=6.7e-16 Score=178.19 Aligned_cols=44 Identities=27% Similarity=0.444 Sum_probs=39.2
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHh
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~ 506 (617)
..|+++|++. .+|+|+||+|++|+++||+|+||||||||+++|+
T Consensus 646 ~~L~v~~l~~------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 646 RQLTVVGARE------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp SEEEEEEECS------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred ceEEEecCcc------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3699999863 3799999999999999999999999999999854
No 82
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.58 E-value=2e-17 Score=170.07 Aligned_cols=123 Identities=15% Similarity=0.190 Sum_probs=87.9
Q ss_pred eeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCC----HHHH--hcceEEEccCCC-cc-cc
Q 007122 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT----LESL--RKSIGVVPQDTV-LF-ND 547 (617)
Q Consensus 476 ~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~----~~~l--r~~i~~V~Qd~~-LF-~g 547 (617)
+++||++++|+.++|||+|||||||+++.|+|++.|++|+|.++|.|+.... +..| |.+++||+|++. ++ ..
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 4678889999999999999999999999999999999999999999886653 2334 457999999987 55 55
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCC
Q 007122 548 TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (617)
Q Consensus 548 TIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~ 615 (617)
|++||+.++.....+. ..++.+++. +-.+..++ .|| |||++||||+..+|+
T Consensus 171 ~v~e~l~~~~~~~~d~---~lldt~gl~-------~~~~~~~~----eLS---kqr~~iaral~~~P~ 221 (302)
T 3b9q_A 171 VLSKAVKRGKEEGYDV---VLCDTSGRL-------HTNYSLME----ELI---ACKKAVGKIVSGAPN 221 (302)
T ss_dssp HHHHHHHHHHHTTCSE---EEECCCCCS-------SCCHHHHH----HHH---HHHHHHHTTSTTCCS
T ss_pred HHHHHHHHHHHcCCcc---hHHhcCCCC-------cchhHHHH----HHH---HHHHHHHHhhccCCC
Confidence 8999997642100000 011111111 11112222 388 999999999999998
No 83
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.57 E-value=3.2e-17 Score=163.82 Aligned_cols=120 Identities=12% Similarity=0.092 Sum_probs=76.8
Q ss_pred CCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccH
Q 007122 470 TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTI 549 (617)
Q Consensus 470 ~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTI 549 (617)
++.++|+|+||++++|+++||+||+|||||||+++|+|++ |.+.+| ..++.+++++||++...-|.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCH
Confidence 3457999999999999999999999999999999999976 666665 35778999999975445699
Q ss_pred HHHHhcCCC--C------CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 550 FHNIRYGRL--S------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 550 reNI~~g~~--~------~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
.+|+.+... . .+.+++.+. ++.+.++.+..+ ..||+||+||+++ +++..+|+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------L~~l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~l 137 (245)
T 2jeo_A 76 EQKAKALKGQYNFDHPDAFDNDLMHRT---------LKNIVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVV 137 (245)
T ss_dssp HHHHHHHTTCCCTTSGGGBCHHHHHHH---------HHHHHTTCCEEE----CCEETTTTEECSS-CEEECCCSEE
T ss_pred hHhhhhhccCCCCCCcccccHHHHHHH---------HHHHHCCCCeec----ccccccccCccCc-eEEecCCCEE
Confidence 999864321 1 112222222 222223444433 4799999999988 6888888763
No 84
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.53 E-value=1.1e-16 Score=167.51 Aligned_cols=123 Identities=15% Similarity=0.190 Sum_probs=89.0
Q ss_pred eeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCC----HHHH--hcceEEEccCCC-cc-cc
Q 007122 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT----LESL--RKSIGVVPQDTV-LF-ND 547 (617)
Q Consensus 476 ~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~----~~~l--r~~i~~V~Qd~~-LF-~g 547 (617)
+++||++++|+.++|||+|||||||+++.|+|++.|++|+|.++|.|+.... +..| |.+++||+|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3578889999999999999999999999999999999999999999886543 2333 567999999987 54 56
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCC
Q 007122 548 TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (617)
Q Consensus 548 TIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~ 615 (617)
|++|||.++.....+. ..++.+++. +-.+..+. .|| |||++||||+..+|+
T Consensus 228 tv~e~l~~~~~~~~d~---~lldt~Gl~-------~~~~~~~~----eLS---kqr~~iaral~~~P~ 278 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDV---VLCDTSGRL-------HTNYSLME----ELI---ACKKAVGKIVSGAPN 278 (359)
T ss_dssp HHHHHHHHHHHTTCSE---EEEECCCCS-------SCCHHHHH----HHH---HHHHHHHHHSTTCCS
T ss_pred hHHHHHHHHHhCCCHH---HHHHhcCCC-------hhhhhHHH----HHH---HHHHHHHHHHhcCCC
Confidence 8999997642110010 011111111 11112222 378 999999999999998
No 85
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.53 E-value=3.6e-17 Score=167.15 Aligned_cols=117 Identities=13% Similarity=0.085 Sum_probs=84.1
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCC---
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS--- 559 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~--- 559 (617)
+++.+|+|+|+||||||||+++|.+++++. | . . ++.+.+|+||+++|+.++++|+.+++++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence 367899999999999999999999999864 2 0 1 4456677999999999999999876321
Q ss_pred CCHHHHHHHHHHHcHHHHHHhCCCCcccc------ccCCCCCCChHHHHHHHHH--HHHhCCCCCC
Q 007122 560 ATEEEVYDAARRAAIHDTIMNFPAKYSTV------VGERGLKLSGGEKQRVALA--RAFLKAPPIL 617 (617)
Q Consensus 560 ~~de~i~~a~~~a~l~~~I~~lp~GldT~------vge~G~~LSGGQrQRlaiA--RAll~~p~IL 617 (617)
......-++.+...+.+++..+++|++|. +.+.+.++||||+||+++| |++ +|+||
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~Il 156 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIF 156 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEE
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEE
Confidence 00000112233456778999999998764 4567889999999999998 665 77764
No 86
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.52 E-value=3.8e-15 Score=155.84 Aligned_cols=137 Identities=18% Similarity=0.258 Sum_probs=99.4
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCC-------CHH
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV-------TLE 529 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~-------~~~ 529 (617)
..++.+++++.|+.+..+|+++ |+|.+|++++|+|+||||||||+++|+|+.+|+.|.|.++|.+.+++ ...
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~ 122 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQS 122 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHH
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhh
Confidence 3589999999997667899999 99999999999999999999999999999999999999998653221 222
Q ss_pred HHhcceEEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccc-cCCCCCCChHHHHHHHHHH
Q 007122 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVV-GERGLKLSGGEKQRVALAR 608 (617)
Q Consensus 530 ~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~v-ge~G~~LSGGQrQRlaiAR 608 (617)
.+++.+.+++|... ...+++..+.....+.++... .|.+..+ -+.-.+||+|| ||+++|
T Consensus 123 ~~~~~v~~~~~~~~----------------~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la- 182 (347)
T 2obl_A 123 TLSKCVLVVTTSDR----------------PALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA- 182 (347)
T ss_dssp HHTTEEEEEECTTS----------------CHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH-
T ss_pred hhhceEEEEECCCC----------------CHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH-
Confidence 34455666665321 113444444444455565443 3444221 24567899999 999999
Q ss_pred HHhCCCCC
Q 007122 609 AFLKAPPI 616 (617)
Q Consensus 609 All~~p~I 616 (617)
+.+|++
T Consensus 183 --l~~p~~ 188 (347)
T 2obl_A 183 --SGEPDV 188 (347)
T ss_dssp --TTCCCC
T ss_pred --cCCCCc
Confidence 688874
No 87
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.49 E-value=6.7e-17 Score=157.29 Aligned_cols=111 Identities=19% Similarity=0.203 Sum_probs=85.2
Q ss_pred EeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcC-CCCC
Q 007122 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYG-RLSA 560 (617)
Q Consensus 482 I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g-~~~~ 560 (617)
.++|++++|+||||||||||+++|+|+++|+ | ..+++|+||.+.++.+..+|+... ..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999886 5 258999999999998888886421 1111
Q ss_pred CHHHHHHHHHHHcHHHHHHhCCCC--ccccccCCCCCCChHHHHHHHHH-HHHhCCCCC
Q 007122 561 TEEEVYDAARRAAIHDTIMNFPAK--YSTVVGERGLKLSGGEKQRVALA-RAFLKAPPI 616 (617)
Q Consensus 561 ~de~i~~a~~~a~l~~~I~~lp~G--ldT~vge~G~~LSGGQrQRlaiA-RAll~~p~I 616 (617)
..+.+...+.+++..++.| +++++.++|..+|+||+||+++| |+++.++.+
T Consensus 80 -----~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~ 133 (208)
T 3c8u_A 80 -----PETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNY 133 (208)
T ss_dssp -----GGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESS
T ss_pred -----CchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCce
Confidence 1112223344555555555 88899999999999999999998 887776654
No 88
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.48 E-value=2.4e-16 Score=146.38 Aligned_cols=89 Identities=15% Similarity=0.167 Sum_probs=73.6
Q ss_pred EEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEcc
Q 007122 461 FDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQ 540 (617)
Q Consensus 461 ~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Q 540 (617)
-+|++++|. +..+++++||+|++|+.++|+||+|||||||+|+|+|++ |++|+|.++|.++.+. ...+ .+++|
T Consensus 10 ~~~~~~~~g-~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~q 82 (158)
T 1htw_A 10 DEFSMLRFG-KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMIY 82 (158)
T ss_dssp SHHHHHHHH-HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEEE
T ss_pred CHHHHHHHH-HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Cccee
Confidence 345566674 357899999999999999999999999999999999999 9999999999877421 1112 28999
Q ss_pred CCCcccccHHHHHh-cC
Q 007122 541 DTVLFNDTIFHNIR-YG 556 (617)
Q Consensus 541 d~~LF~gTIreNI~-~g 556 (617)
++.+|.-|+.||+. +|
T Consensus 83 ~~~l~~ltv~e~l~~~g 99 (158)
T 1htw_A 83 HFDLYRLADPEELEFMG 99 (158)
T ss_dssp EEECTTCSCTTHHHHST
T ss_pred ccccccCCcHHHHHHcC
Confidence 99999889999995 45
No 89
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.47 E-value=8.4e-16 Score=146.91 Aligned_cols=123 Identities=16% Similarity=0.096 Sum_probs=80.9
Q ss_pred EEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCC
Q 007122 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSA 560 (617)
Q Consensus 481 ~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~ 560 (617)
.+++|+.++|+|+||||||||+++|+|. |..|.|.+||.++.+... .++.++|++|++. .+.|+.||+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH---
Confidence 5789999999999999999999999998 789999999876532211 1345688888765 5678888886421
Q ss_pred CHHHHHHHHHHHcHHHHHHhCC--CCcccc--ccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 561 TEEEVYDAARRAAIHDTIMNFP--AKYSTV--VGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 561 ~de~i~~a~~~a~l~~~I~~lp--~GldT~--vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
... . ..+-...++... .+++.. .+.....+|+||+||+++||++.++|+++
T Consensus 77 ---~~~--~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l 131 (191)
T 1zp6_A 77 ---GRY--A-KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL 131 (191)
T ss_dssp ---HHH--H-HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC
T ss_pred ---HHH--h-ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc
Confidence 000 0 000000000000 011110 12234579999999999999999999864
No 90
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.46 E-value=1.1e-16 Score=171.31 Aligned_cols=140 Identities=16% Similarity=0.132 Sum_probs=95.7
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCC----CHHHHhcc
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV----TLESLRKS 534 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~----~~~~lr~~ 534 (617)
++++|++|.|+ ...+|+++ + .++|+.++|+|||||||||++++|+|+++|++|+|.++|.++... +...++.+
T Consensus 144 ~~l~~Lg~~~~-~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~ 220 (418)
T 1p9r_A 144 LDLHSLGMTAH-NHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPR 220 (418)
T ss_dssp CCGGGSCCCHH-HHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGG
T ss_pred CCHHHcCCCHH-HHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccc
Confidence 34455555442 23467777 4 389999999999999999999999999999999999998877421 12234455
Q ss_pred eEEEc---------cCCCcc--c-----ccHHHHHhcCCC--------C-CCHHHHHHHHHHHcHHHHHHhCCCCccccc
Q 007122 535 IGVVP---------QDTVLF--N-----DTIFHNIRYGRL--------S-ATEEEVYDAARRAAIHDTIMNFPAKYSTVV 589 (617)
Q Consensus 535 i~~V~---------Qd~~LF--~-----gTIreNI~~g~~--------~-~~de~i~~a~~~a~l~~~I~~lp~GldT~v 589 (617)
+++++ |+|-++ . .|+.+|+.++.. . .+..+..+.+...++.++.
T Consensus 221 ~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~----------- 289 (418)
T 1p9r_A 221 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL----------- 289 (418)
T ss_dssp GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-----------
T ss_pred cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-----------
Confidence 66644 888763 2 388888865311 1 1122333344444443221
Q ss_pred cCCCCCCChHHHHHHHHHHHHhCCCCC
Q 007122 590 GERGLKLSGGEKQRVALARAFLKAPPI 616 (617)
Q Consensus 590 ge~G~~LSGGQrQRlaiARAll~~p~I 616 (617)
...+|||||+|| ||||+..+|++
T Consensus 290 --~~~~LSgg~~QR--LaraL~~~p~~ 312 (418)
T 1p9r_A 290 --ISSSLLGVLAQR--LVRTLCPDCKE 312 (418)
T ss_dssp --HHHHEEEEEEEE--EEEEECTTTCE
T ss_pred --HHHHHHHHHHHH--hhhhhcCCCCc
Confidence 235799999999 99999999986
No 91
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.46 E-value=7.3e-15 Score=150.94 Aligned_cols=115 Identities=19% Similarity=0.225 Sum_probs=82.8
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCC----HHHH--hcceEEEccCCCccc-ccHHHHHhcC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT----LESL--RKSIGVVPQDTVLFN-DTIFHNIRYG 556 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~----~~~l--r~~i~~V~Qd~~LF~-gTIreNI~~g 556 (617)
+|+.++|||||||||||+++.|+|+++|++|+|.++|.|+.... ...| |..+++|+|++.++. .|++||+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999987654 2233 457999999988765 4788887643
Q ss_pred CCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCC
Q 007122 557 RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (617)
Q Consensus 557 ~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~ 615 (617)
. ..+.+..+-..+...+. ....++..++||.+||||+..+|+
T Consensus 181 ~-------------~~~~d~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~ 222 (304)
T 1rj9_A 181 K-------------ARGYDLLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPK 222 (304)
T ss_dssp H-------------HHTCSEEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCS
T ss_pred H-------------hCCCCEEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCC
Confidence 1 00111001111111111 112256778999999999999998
No 92
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.45 E-value=1.9e-16 Score=152.86 Aligned_cols=113 Identities=24% Similarity=0.373 Sum_probs=86.0
Q ss_pred EeCCcEEEEECCCcchHHHHHHHHhcCCC-------------CCCCeEEECCEeCCCCCHHHHhcceEEEccCCCccccc
Q 007122 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFD-------------THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDT 548 (617)
Q Consensus 482 I~~G~~vaIVG~SGsGKSTL~~LL~gl~~-------------p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gT 548 (617)
+++|+.++||||||||||||+++|+|+++ |..|+ +||+++..++.+.+++.+ +|++++|++|
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999986 88998 699999999999999876 7999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH-HHhCCCCC
Q 007122 549 IFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR-AFLKAPPI 616 (617)
Q Consensus 549 IreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiAR-All~~p~I 616 (617)
+++|+ ||. +++++.++++.....- .+-.|+|+++.... ++ .|| +++++|++
T Consensus 76 ~~~n~-~g~---~~~~i~~~~~~~~~~~-~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~ 127 (198)
T 1lvg_A 76 FSGNL-YGT---SKEAVRAVQAMNRICV-LDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSL 127 (198)
T ss_dssp ETTEE-EEE---EHHHHHHHHHTTCEEE-EECCHHHHHHHTTS-----------SC-CCEEEEEECSCH
T ss_pred ecCcc-CCC---CHHHHHHHHHcCCcEE-EECCHHHHHHHHhc-----------CC-CcEEEEEeCCCH
Confidence 99998 773 6788888887642211 12246677765431 12 566 77877764
No 93
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.44 E-value=9.6e-16 Score=149.10 Aligned_cols=107 Identities=17% Similarity=0.190 Sum_probs=76.4
Q ss_pred EeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccc---cHHHHHhc--C
Q 007122 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND---TIFHNIRY--G 556 (617)
Q Consensus 482 I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~g---TIreNI~~--g 556 (617)
.++|++++|+|+||||||||+++|+|++.| +++||+||+++++. |+++|+.+ +
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 579999999999999999999999999875 58999999999854 57777644 3
Q ss_pred CCC-CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 557 RLS-ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 557 ~~~-~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
.+. .+.+.+.++++..++.+.+.. | .++...|+++. |+||+++||+++.+|+++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~s~g~~~~-----~~~~~~~~~~li~~~~ll 115 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPVEM-P-VYDFRAYTRSP-----RRTPVRPAPVVILEGILV 115 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCEEE-C-CEETTTTEECS-----SCEEECCCSEEEEESTTT
T ss_pred ChhhhhHHHHHHHHHHHHcCCCcCC-C-cccCcccCCCC-----CeEEeCCCcEEEEeehhh
Confidence 332 345667777776665544333 2 33333333221 468999999999998875
No 94
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.44 E-value=5.5e-15 Score=143.12 Aligned_cols=142 Identities=18% Similarity=0.309 Sum_probs=79.1
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCC-----CCCCCeEEE-------CCEeCCCC
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF-----DTHSGSIRI-------DGQDICEV 526 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~-----~p~~G~I~i-------dG~~i~~~ 526 (617)
|+++|++|.|+ .+++++ |++++|.+++|+|++|||||||++.|+|.. .|+.|.+.+ ++..+-+.
T Consensus 4 l~~~~~~~~~~--~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt 79 (210)
T 1pui_A 4 LNYQQTHFVMS--APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDL 79 (210)
T ss_dssp -------CEEE--ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEEC
T ss_pred hhhhhhhheee--cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEEC
Confidence 78999999996 368888 889999999999999999999999999998 889998765 23322211
Q ss_pred C-----------HHHHhcceEEEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccc-cccCCC
Q 007122 527 T-----------LESLRKSIGVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYST-VVGERG 593 (617)
Q Consensus 527 ~-----------~~~lr~~i~~V~Qd~~LF~g-TIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT-~vge~G 593 (617)
+ .+.+++.++++.|+...+++ ++..|+..+. ...++++.+.+ .. .+... .++.+-
T Consensus 80 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~-~~~~~~~~~~~---------~~--~~~~~~~v~nK~ 147 (210)
T 1pui_A 80 PGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL-KDLDQQMIEWA---------VD--SNIAVLVLLTKA 147 (210)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC-CHHHHHHHHHH---------HH--TTCCEEEEEECG
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCC-chhHHHHHHHH---------HH--cCCCeEEEEecc
Confidence 1 13345555555554333332 2222332221 11112222222 21 12322 246666
Q ss_pred CCCChHHHHH-HHHHHHHhCCCCC
Q 007122 594 LKLSGGEKQR-VALARAFLKAPPI 616 (617)
Q Consensus 594 ~~LSGGQrQR-laiARAll~~p~I 616 (617)
-.+|+||||| +..||+++++|++
T Consensus 148 D~~s~~~~~~~~~~~~~~~~~~~~ 171 (210)
T 1pui_A 148 DKLASGARKAQLNMVREAVLAFNG 171 (210)
T ss_dssp GGSCHHHHHHHHHHHHHHHGGGCS
T ss_pred cCCCchhHHHHHHHHHHHHHhcCC
Confidence 6799999999 8999999988763
No 95
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.41 E-value=2.1e-15 Score=144.34 Aligned_cols=105 Identities=22% Similarity=0.248 Sum_probs=81.2
Q ss_pred CcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCCCHHH
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEE 564 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~~de~ 564 (617)
|++++|+|+||||||||+++|+|+++ ++| |.+||.+..++. .++++++|++|+. +++ ++|+.-.....+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~~~~--- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGLEPP--- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCCCCC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcccccCC---
Confidence 78999999999999999999999999 999 999999987654 5788999999986 443 334321110000
Q ss_pred HHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHH-HHHH---HHhCCCCCC
Q 007122 565 VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV-ALAR---AFLKAPPIL 617 (617)
Q Consensus 565 i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRl-aiAR---All~~p~IL 617 (617)
+...+..+|+.|..+|||||+++ +++| |+.++|++|
T Consensus 70 -----------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvl 109 (189)
T 2i3b_A 70 -----------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVC 109 (189)
T ss_dssp -----------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCE
T ss_pred -----------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEE
Confidence 11234589999999999999999 5566 788999875
No 96
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.41 E-value=1.6e-13 Score=143.13 Aligned_cols=124 Identities=13% Similarity=0.074 Sum_probs=83.0
Q ss_pred ccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC-CCCCeEEEC-CEeCCCCCHHHHhcceEEEccCCCcccc-cH
Q 007122 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-THSGSIRID-GQDICEVTLESLRKSIGVVPQDTVLFND-TI 549 (617)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~-p~~G~I~id-G~~i~~~~~~~lr~~i~~V~Qd~~LF~g-TI 549 (617)
.-++++++. .+|++++|+|+||||||||+++|+|+.. |..|+|.++ |.+.. ...+..+++++|++++++. |+
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGV 278 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHH
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccH
Confidence 346677764 4899999999999999999999999999 999999987 76542 2346689999999998865 89
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhC
Q 007122 550 FHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612 (617)
Q Consensus 550 reNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~ 612 (617)
+|+-. ...+.+++.+. +.++++.+ |+.-.....-.+|| ||+||++||++++.
T Consensus 279 ~e~~l---~~l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli~ 330 (358)
T 2rcn_A 279 REFGL---WHLEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAIA 330 (358)
T ss_dssp HTCCC---CCCCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSSC
T ss_pred HHhhh---cCCCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCCC
Confidence 98532 23555554322 22333332 33333344556899 99999999999864
No 97
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.37 E-value=4.3e-14 Score=150.49 Aligned_cols=144 Identities=17% Similarity=0.209 Sum_probs=88.4
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcE--EEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKS--VAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~--vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i 535 (617)
.+++++ +++|++ .+ |+++||+|++|+. +||||+||||||||+++|+|+. ++|.++...++...++.+
T Consensus 16 ~l~~~~-~~~y~~-~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~i 84 (427)
T 2qag_B 16 TVPLAG-HVGFDS-LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQSN 84 (427)
T ss_dssp -CCCCC-CC-CC---C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEEE
T ss_pred eEEEee-EEEECC-ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEeeE
Confidence 466777 788864 45 9999999999999 9999999999999999999983 456665554445556789
Q ss_pred EEEccCCCcc-cccHHHHHhcCCCCCCHHHHHHHHH---HHcHHHHHHhC-------CCCcccc----c---cCCCCCCC
Q 007122 536 GVVPQDTVLF-NDTIFHNIRYGRLSATEEEVYDAAR---RAAIHDTIMNF-------PAKYSTV----V---GERGLKLS 597 (617)
Q Consensus 536 ~~V~Qd~~LF-~gTIreNI~~g~~~~~de~i~~a~~---~a~l~~~I~~l-------p~GldT~----v---ge~G~~LS 597 (617)
+|++|++.++ .-|+.||+.+|.. .+.+.-++.+. ...+.+++... +..-|+. + -+.+..|+
T Consensus 85 ~~v~Q~~~l~~~ltv~D~~~~g~~-~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~ 163 (427)
T 2qag_B 85 TYDLQESNVRLKLTIVSTVGFGDQ-INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK 163 (427)
T ss_dssp EEEEEC--CEEEEEEEEEECCCC--CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C
T ss_pred EEEeecCccccccchhhhhhhhhc-cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC
Confidence 9999999887 6699999999863 44433222211 11233333332 2223333 1 24455677
Q ss_pred hHHHHHHHHHHHHhCCCCC
Q 007122 598 GGEKQRVALARAFLKAPPI 616 (617)
Q Consensus 598 GGQrQRlaiARAll~~p~I 616 (617)
-.+ +.|+|+|..+++|
T Consensus 164 ~~D---ieilk~L~~~~~v 179 (427)
T 2qag_B 164 SLD---LVTMKKLDSKVNI 179 (427)
T ss_dssp HHH---HHHHHHTCSCSEE
T ss_pred HHH---HHHHHHHhhCCCE
Confidence 766 7999999877655
No 98
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.33 E-value=3.7e-15 Score=155.71 Aligned_cols=87 Identities=17% Similarity=0.149 Sum_probs=74.9
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCH----HHHhcc
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL----ESLRKS 534 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~----~~lr~~ 534 (617)
|+++|+++.|. ...+|+++|+++++|+.++|+|++|||||||++.|+|++.|++|+|.+.|.|...... ...|.+
T Consensus 30 ie~~~~~~~~~-~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 30 AESRRADHRAA-VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp HTCSSHHHHHH-HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred HeeCCcccccC-hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 56677777784 3478999999999999999999999999999999999999999999999998854321 235778
Q ss_pred eEEEccCCCccc
Q 007122 535 IGVVPQDTVLFN 546 (617)
Q Consensus 535 i~~V~Qd~~LF~ 546 (617)
+++++|++.+|.
T Consensus 109 i~~v~q~~~~~~ 120 (337)
T 2qm8_A 109 MARLAIDRNAFI 120 (337)
T ss_dssp STTGGGCTTEEE
T ss_pred heeeccCccccc
Confidence 999999999985
No 99
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.33 E-value=2.1e-15 Score=156.49 Aligned_cols=126 Identities=13% Similarity=0.166 Sum_probs=89.1
Q ss_pred cEEEEECCCcchHHHHHHHHhcCC--------CCCCCeEEECCEeCCCCC---------------HHHHhcceEEE---c
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRSF--------DTHSGSIRIDGQDICEVT---------------LESLRKSIGVV---P 539 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl~--------~p~~G~I~idG~~i~~~~---------------~~~lr~~i~~V---~ 539 (617)
+.++|+|++|||||||++.|+|++ .|+.|+|.+||.++.+.+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999998 889999999999998764 35677889988 7
Q ss_pred cCCC-cccccHHHHHhcCCCCCCHHHHHHHH-HHHcHHHHHHhCCCCccccccCC-----CCCCChHHHHHHHHHHHHhC
Q 007122 540 QDTV-LFNDTIFHNIRYGRLSATEEEVYDAA-RRAAIHDTIMNFPAKYSTVVGER-----GLKLSGGEKQRVALARAFLK 612 (617)
Q Consensus 540 Qd~~-LF~gTIreNI~~g~~~~~de~i~~a~-~~a~l~~~I~~lp~GldT~vge~-----G~~LSGGQrQRlaiARAll~ 612 (617)
|++. .|+.++.||+.+++| +.+.+.+ ......+. ..+ ++.-|.++-. -.+||+||+||...+|+++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p----~~~~~~~~~~~~~~~~-~~l-~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADP----GPIIQTFFSHEVLCQR-YLL-DGVIALVDAVHADEQMNQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCH----HHHHHHHHHSHHHHHH-EEE-EEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCH----HHHHHHHhcCccccCe-EEE-CCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEE
Confidence 8876 478999999988754 2222222 00000000 000 1111222210 11589999999999999999
Q ss_pred CCCCC
Q 007122 613 APPIL 617 (617)
Q Consensus 613 ~p~IL 617 (617)
+|+++
T Consensus 159 k~dl~ 163 (318)
T 1nij_A 159 KTDVA 163 (318)
T ss_dssp CTTTC
T ss_pred CcccC
Confidence 98864
No 100
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.32 E-value=9.8e-16 Score=169.85 Aligned_cols=129 Identities=16% Similarity=0.090 Sum_probs=89.6
Q ss_pred eecCCcccceeeeE-EEeCCcEEEEECCCcchHHHHHHH--HhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCC
Q 007122 467 SYLTERKILDGVSF-VVPAGKSVAIVGTSGSGKSTILRL--LFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTV 543 (617)
Q Consensus 467 ~Y~~~~~vL~~isl-~I~~G~~vaIVG~SGsGKSTL~~L--L~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~ 543 (617)
+|+.+.++|+|+++ .|++|+.++|+|+||||||||++. +.|+++|.+|.|+++|.+. ..+....++++++++|++.
T Consensus 20 ~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~ 98 (525)
T 1tf7_A 20 KMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLV 98 (525)
T ss_dssp EECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHH
T ss_pred cccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhh
Confidence 46667789999999 999999999999999999999999 6899999999999999873 2233455678999999975
Q ss_pred cccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCC
Q 007122 544 LFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (617)
Q Consensus 544 LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~ 613 (617)
.. +|+.+...... ++.+++++..++.+.....| ..|||||+|||.|+.+....
T Consensus 99 ~~-----~~l~~~~~~~~-~~~~~~l~~~~l~~~~~~~~-----------~~LS~g~~~~lilDe~t~~~ 151 (525)
T 1tf7_A 99 DE-----GKLFILDASPD-PEGQEVVGGFDLSALIERIN-----------YAIQKYRARRVSIDSVTSVF 151 (525)
T ss_dssp HT-----TSEEEEECCCC-SSCCSCCSSHHHHHHHHHHH-----------HHHHHHTCSEEEEECSTTTS
T ss_pred cc-----CcEEEEecCcc-cchhhhhcccCHHHHHHHHH-----------HHHHHcCCCEEEECCHHHHH
Confidence 31 12221110000 11122334445554444332 34688999998888766543
No 101
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.31 E-value=2.7e-14 Score=152.67 Aligned_cols=128 Identities=19% Similarity=0.214 Sum_probs=74.3
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~ 536 (617)
+.|+++|++++|+ +.++++|++|+| +|||+||||||||++.|+|+..|..| .+|.++... ....+..++
T Consensus 10 ~~l~~~~l~~~y~-~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~i~ 78 (418)
T 2qag_C 10 GYVGFANLPNQVY-RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQSK 78 (418)
T ss_dssp -----CCCCCCTT-TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEEE
T ss_pred CcEEEEecceeEC-CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeeeEE
Confidence 3699999999996 468999999998 99999999999999999999886665 234333211 111245789
Q ss_pred EEccCCCcc-cccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCC
Q 007122 537 VVPQDTVLF-NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (617)
Q Consensus 537 ~V~Qd~~LF-~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~ 615 (617)
+++|++.++ .-||.||+.++.. .+.++.++. +.+++.. .++.+.+||++||||++++|+
T Consensus 79 ~v~q~~~~~~~Ltv~Dt~g~~~~-~~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~d~~ 138 (418)
T 2qag_C 79 VLIKEGGVQLLLTIVDTPGFGDA-VDNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMPDNR 138 (418)
T ss_dssp CC------CEEEEEEECC------------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCCCC-
T ss_pred EEEecCCcccceeeeechhhhhh-ccchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhccCCC
Confidence 999988876 6799999988753 222222222 2223322 234456789999999999998
No 102
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.29 E-value=7.8e-14 Score=135.38 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=62.6
Q ss_pred CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccc-cH
Q 007122 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND-TI 549 (617)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~g-TI 549 (617)
..++++| .+|++||+++|+||||||||||+++|+|+++ +|.+++.....-.....++.++|++|++.+|.. |+
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHh
Confidence 3578999 7999999999999999999999999999986 355554221111112236789999999987753 45
Q ss_pred HHHHhc-----CC-C--CCCHHHHHHH----------HHHHcHHHHHHhCCCCc
Q 007122 550 FHNIRY-----GR-L--SATEEEVYDA----------ARRAAIHDTIMNFPAKY 585 (617)
Q Consensus 550 reNI~~-----g~-~--~~~de~i~~a----------~~~a~l~~~I~~lp~Gl 585 (617)
.||+.. ++ . ..+.+++.+. ++..++.+.....|..+
T Consensus 82 ~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~l 135 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAV 135 (207)
T ss_dssp TTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSE
T ss_pred cCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcE
Confidence 555521 10 0 1223333333 44557777777777643
No 103
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.28 E-value=1.8e-13 Score=140.73 Aligned_cols=114 Identities=15% Similarity=0.081 Sum_probs=78.9
Q ss_pred EEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEE---CCEeCCCCCHHHHh-cceEEEccCCCcc------cccHH
Q 007122 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI---DGQDICEVTLESLR-KSIGVVPQDTVLF------NDTIF 550 (617)
Q Consensus 481 ~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~i---dG~~i~~~~~~~lr-~~i~~V~Qd~~LF------~gTIr 550 (617)
++.+|++++++|+||||||||+++|+ +.+|.+|+|.+ +|.++..... ..+ +.++||+|+|.+. .-|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 45679999999999999999999999 99999999999 9988866442 222 3799999999653 5578
Q ss_pred HHH--hcC---------C----CCCCHHHHHHHHHHHcHHH-HHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 007122 551 HNI--RYG---------R----LSATEEEVYDAARRAAIHD-TIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (617)
Q Consensus 551 eNI--~~g---------~----~~~~de~i~~a~~~a~l~~-~I~~lp~GldT~vge~G~~LSGGQrQRlaiAR 608 (617)
||+ .|+ . .....+.+.++++..++.+ ..++. ...|||.++++++|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~-----------~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSY-----------LKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHH-----------HHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHH-----------HHHHHHHHHHHHHHhc
Confidence 898 443 1 1112345777777777654 33322 2358998888999987
No 104
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.23 E-value=8.7e-14 Score=143.05 Aligned_cols=125 Identities=19% Similarity=0.247 Sum_probs=52.6
Q ss_pred EeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcC-CCCCCCeEEECCEeCCCCCHHHHhcceEEEcc
Q 007122 462 DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS-FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQ 540 (617)
Q Consensus 462 ~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl-~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Q 540 (617)
+|+++.|. ++.++++++|+| +|||+||+|||||++.|+|. ..|++| |.++|.++.. .. . ++.+++++|
T Consensus 2 ~~l~~~~~-~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~~q 70 (301)
T 2qnr_A 2 SNLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVEIE 70 (301)
T ss_dssp -----------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC
T ss_pred CCCcceEC-CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEEec
Confidence 47788885 457999999998 99999999999999999998 889999 9888877653 11 1 456899999
Q ss_pred CCCcc-cccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 007122 541 DTVLF-NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (617)
Q Consensus 541 d~~LF-~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAl 610 (617)
++.++ .-|+.||..++......++....++. +.+. ++..+ .++|||||||+++|||+
T Consensus 71 ~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~-------~~~~~----~~~sgg~rqrv~~ara~ 128 (301)
T 2qnr_A 71 ERGVKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQ-------FERYL----HDESGLNRRHIIDNRVH 128 (301)
T ss_dssp ---CCEEEEEEEEC-----------CTTHHHH--HHHH-------HHHHH----HHHTSSCCTTCCCCCCC
T ss_pred CCCcccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHH-------HHHHH----HHhCHHhhhhhhhhhhh
Confidence 86654 56888888776421111111111111 1111 11222 35899999999999964
No 105
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.19 E-value=2.8e-11 Score=127.71 Aligned_cols=31 Identities=26% Similarity=0.515 Sum_probs=28.4
Q ss_pred ceeeeEEEeCCcEEEEECCCcchHHHHHHHHh
Q 007122 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (617)
Q Consensus 475 L~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~ 506 (617)
++++++++++| .++|+||||||||||+.+|+
T Consensus 14 ~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 14 LKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 56788999999 78899999999999999988
No 106
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.18 E-value=5.3e-13 Score=137.73 Aligned_cols=91 Identities=18% Similarity=0.261 Sum_probs=76.9
Q ss_pred cceEEEeEEEeecCCcccceeeeEEE-------------------eCCcEEEEECCCcchHHHHHHHHhcCCC--CCCCe
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVV-------------------PAGKSVAIVGTSGSGKSTILRLLFRSFD--THSGS 515 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I-------------------~~G~~vaIVG~SGsGKSTL~~LL~gl~~--p~~G~ 515 (617)
+.|+++||++.|. ++++++++++ ++|+++||+|+||||||||+++|+|++. |++|+
T Consensus 36 ~~i~~~~v~~~y~---~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~ 112 (308)
T 1sq5_A 36 EDLSLEEVAEIYL---PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR 112 (308)
T ss_dssp TTCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred cccchHhHHHHHH---HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence 4699999999993 7999999988 8999999999999999999999999998 99999
Q ss_pred EEE---CCEeCCCCCHHHHhcceEEEccCCCcc-cccHHHHHhc
Q 007122 516 IRI---DGQDICEVTLESLRKSIGVVPQDTVLF-NDTIFHNIRY 555 (617)
Q Consensus 516 I~i---dG~~i~~~~~~~lr~~i~~V~Qd~~LF-~gTIreNI~~ 555 (617)
|.+ ||.+.. . ..++.++++ |+..++ .-|+.+|+.+
T Consensus 113 i~vi~~d~~~~~---~-~~~~~~~~v-q~~~~~~~~~~~~~~~~ 151 (308)
T 1sq5_A 113 VELITTDGFLHP---N-QVLKERGLM-KKKGFPESYDMHRLVKF 151 (308)
T ss_dssp EEEEEGGGGBCC---H-HHHHHHTCT-TCTTSGGGBCHHHHHHH
T ss_pred EEEEecCCccCc---H-HHHHhCCEe-ecCCCCCCccHHHHHHH
Confidence 999 987742 2 346678999 766554 4578888754
No 107
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.17 E-value=4e-12 Score=137.01 Aligned_cols=82 Identities=26% Similarity=0.333 Sum_probs=69.6
Q ss_pred ceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCC----HHH--HhcceEEEccCCCcc-cc
Q 007122 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT----LES--LRKSIGVVPQDTVLF-ND 547 (617)
Q Consensus 475 L~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~----~~~--lr~~i~~V~Qd~~LF-~g 547 (617)
-+++||++++|++++|||+||||||||++.|+|++.|++|+|.++|.|..... +.. .|.+++||+|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 35789999999999999999999999999999999999999999887765431 122 377899999998755 67
Q ss_pred cHHHHHhcC
Q 007122 548 TIFHNIRYG 556 (617)
Q Consensus 548 TIreNI~~g 556 (617)
|+++||.++
T Consensus 363 tV~e~l~~a 371 (503)
T 2yhs_A 363 VIFDAIQAA 371 (503)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 899999765
No 108
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.16 E-value=1.3e-11 Score=136.59 Aligned_cols=117 Identities=11% Similarity=0.091 Sum_probs=82.1
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
++.+++++.|+.-+.+|.+ .|++|+.++|+|++|||||||++.++|+..|. |+ +-+.++
T Consensus 258 ~~~~~l~~g~~~ld~vL~g---~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~ 316 (525)
T 1tf7_A 258 SSNVRVSSGVVRLDEMCGG---GFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFA 316 (525)
T ss_dssp CCCCEECCSCHHHHHHTTS---SEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEE
T ss_pred cccceeecChHHHHHHhCC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEE
Confidence 5677888777532234544 89999999999999999999999999998874 54 125677
Q ss_pred ccCCCcccccHHHHHh-cCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 539 PQDTVLFNDTIFHNIR-YGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 539 ~Qd~~LF~gTIreNI~-~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
+|++. .++++|.. ++ .+.++ +.. .|+.......-..|||||+||+++||++..+|++|
T Consensus 317 ~ee~~---~~l~~~~~~~g---~~~~~------------~~~---~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~ll 375 (525)
T 1tf7_A 317 YEESR---AQLLRNAYSWG---MDFEE------------MER---QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARI 375 (525)
T ss_dssp SSSCH---HHHHHHHHTTS---CCHHH------------HHH---TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EeCCH---HHHHHHHHHcC---CCHHH------------HHh---CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEE
Confidence 78762 46666653 22 22221 111 13333333445679999999999999999999874
No 109
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.15 E-value=4.3e-12 Score=130.41 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=69.6
Q ss_pred EEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEE---CCEeCCCCCHHHHhcceEEEccCCCc------------
Q 007122 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI---DGQDICEVTLESLRKSIGVVPQDTVL------------ 544 (617)
Q Consensus 480 l~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~i---dG~~i~~~~~~~lr~~i~~V~Qd~~L------------ 544 (617)
|++.+|+.++|+||||||||||+++|+|+..|++|+|.+ +|.++.........+++++|+|+|.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999999999999999 99988765422112369999999853
Q ss_pred ----c-cccHHHHHhcCCC---CCCHHHHHHHHHHHcH-HHHHHhCCC
Q 007122 545 ----F-NDTIFHNIRYGRL---SATEEEVYDAARRAAI-HDTIMNFPA 583 (617)
Q Consensus 545 ----F-~gTIreNI~~g~~---~~~de~i~~a~~~a~l-~~~I~~lp~ 583 (617)
| +-|+ ||+.|+.- ...++.+.++++..+| .+..++.|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 4 4477 89887521 2234578899999998 466665553
No 110
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.15 E-value=3.1e-14 Score=144.41 Aligned_cols=125 Identities=18% Similarity=0.258 Sum_probs=90.6
Q ss_pred cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCC-Ccc-cccH
Q 007122 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDT-VLF-NDTI 549 (617)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~-~LF-~gTI 549 (617)
+.+++++++++++| ++|+||+|||||||+++|+|.+.+ |.|.++|.++.+....+.++.+++++|++ ..+ .-++
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence 35789999999999 999999999999999999999877 79999999887766667778899999985 333 3466
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 550 FHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 550 reNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
.|||....+...+++. . . ....+.+.-..|||||+||..|++|+..+|++|
T Consensus 109 ~Deid~~~~~r~~~~~-~-----~-----------~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 109 FDEVDALCPRRSDRET-G-----A-----------SVRVVNQLLTEMDGLEARQQVFIMAATNRPDII 159 (274)
T ss_dssp EETCTTTCC--------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS
T ss_pred eehhhhhhcccCCCcc-h-----H-----------HHHHHHHHHHhhhcccccCCEEEEeecCChhhC
Confidence 7787654321111110 0 0 011111122358999999999999999999875
No 111
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.15 E-value=1.7e-12 Score=130.00 Aligned_cols=102 Identities=25% Similarity=0.258 Sum_probs=81.4
Q ss_pred eCCcEEEEECCCcchHHHHHHHHh---cCCCCCCCeEE--------ECCEeC-CCCCHHHHhcceEEEcc------CCCc
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLF---RSFDTHSGSIR--------IDGQDI-CEVTLESLRKSIGVVPQ------DTVL 544 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~---gl~~p~~G~I~--------idG~~i-~~~~~~~lr~~i~~V~Q------d~~L 544 (617)
++|++|+|+|+|||||||++++|+ |++.|++|.|. .+|.++ .......+++++++++| ..++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 99999999999 999998 45668889999999995 4567
Q ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccC
Q 007122 545 FNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGE 591 (617)
Q Consensus 545 F~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge 591 (617)
++.++.+||. .+++.+++..+..++.|......+...+++
T Consensus 105 ~~~~v~~~i~-------~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~ 144 (252)
T 4e22_A 105 EGEDVSNEIR-------TETVGNTASQAAAFPRVREALLRRQRAFRE 144 (252)
T ss_dssp TTEECTTGGG-------SHHHHHHHHHHTTSHHHHHHHHHHHHTTCC
T ss_pred CCeehhHHHH-------HHHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence 8888888875 356666666666666665554444444443
No 112
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.13 E-value=6.7e-12 Score=128.54 Aligned_cols=128 Identities=12% Similarity=0.054 Sum_probs=86.5
Q ss_pred cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCC-eEEECCEeCCCCCHHHHhcceEEEccCCCcccccHH
Q 007122 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG-SIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIF 550 (617)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G-~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIr 550 (617)
.++|+++++.+++|+.++|+|++|||||||++.|+|...|.+| .|.+.+. +.+...+++++..+.|+..+ +..
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~---e~~~~~~~~r~~~~~~~~~~---~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML---EESVEETAEDLIGLHNRVRL---RQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES---SSCHHHHHHHHHHHHTTCCG---GGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC---cCCHHHHHHHHHHHHcCCCh---hhc
Confidence 3579999999999999999999999999999999999999988 7765443 34566777666666655432 233
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHH-HHHHHHHHHHhCCCCCC
Q 007122 551 HNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGE-KQRVALARAFLKAPPIL 617 (617)
Q Consensus 551 eNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQ-rQRlaiARAll~~p~IL 617 (617)
+|+..+. .++++..++++ +.+...+-+ +.+...++|.+| +||+. |+|+..+|+++
T Consensus 96 ~~l~~~~--~~~~~~~~~~~-----~~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~ll 151 (296)
T 1cr0_A 96 DSLKREI--IENGKFDQWFD-----ELFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVI 151 (296)
T ss_dssp HHHHHHH--HHHTHHHHHHH-----HHHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEE
T ss_pred cccccCC--CCHHHHHHHHH-----HHhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEE
Confidence 4554331 22333333222 222222222 333335689999 77777 99999999874
No 113
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.13 E-value=2.7e-12 Score=140.81 Aligned_cols=131 Identities=15% Similarity=0.180 Sum_probs=90.8
Q ss_pred ccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCccc--ccHH
Q 007122 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN--DTIF 550 (617)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~--gTIr 550 (617)
++++++++.+++|+.++|+|||||||||++++|+|+++|++|.|.++|.+--.++ . ++++.++.|+.. .. .|.+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~--~-~~~v~~~~r~~~-~~~~~~~~ 323 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY--H-ENWIAEVTRTGM-GEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC--C-SSEEEEECBCCS-SSCCBCHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC--C-CCeEEEEeeccc-ccCCcCHH
Confidence 5789999999999999999999999999999999999999999999986522222 1 356788888765 33 3777
Q ss_pred HHHhcC---CC------CCCHHHHHHHHHHHc-------------HHHHHHh---CCCCcccccc-------CCCCCCCh
Q 007122 551 HNIRYG---RL------SATEEEVYDAARRAA-------------IHDTIMN---FPAKYSTVVG-------ERGLKLSG 598 (617)
Q Consensus 551 eNI~~g---~~------~~~de~i~~a~~~a~-------------l~~~I~~---lp~GldT~vg-------e~G~~LSG 598 (617)
+++... +| +..++|...+++.+. +.+.+.+ .|.|....+. .....+||
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 776432 23 355556666655542 2233333 2334433322 23345899
Q ss_pred HHHHHHHHH
Q 007122 599 GEKQRVALA 607 (617)
Q Consensus 599 GQrQRlaiA 607 (617)
|||||.++|
T Consensus 404 G~~~R~~~a 412 (511)
T 2oap_1 404 NTRLRRTKE 412 (511)
T ss_dssp SCEEEEEEE
T ss_pred CCceEEEEE
Confidence 999998765
No 114
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.13 E-value=2.4e-11 Score=139.03 Aligned_cols=103 Identities=15% Similarity=0.088 Sum_probs=76.5
Q ss_pred cceEEEeEEEeecC----CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC-CCCCeEEECCEeCCCCCHHHH
Q 007122 457 GSIQFDNVHFSYLT----ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-THSGSIRIDGQDICEVTLESL 531 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~----~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~-p~~G~I~idG~~i~~~~~~~l 531 (617)
+.|++++. ++|- ++.+++|+||+ |+.++|+|||||||||++|+++|+.. |+.|.+.- ..
T Consensus 549 ~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp-----------a~ 612 (765)
T 1ewq_A 549 DRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP-----------AE 612 (765)
T ss_dssp SSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS-----------SS
T ss_pred CcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee-----------hh
Confidence 46889887 4552 35899999999 99999999999999999999999874 78887531 12
Q ss_pred hcceEEEccCCCccc-ccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 007122 532 RKSIGVVPQDTVLFN-DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (617)
Q Consensus 532 r~~i~~V~Qd~~LF~-gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAl 610 (617)
+.++++|+| +|. -|+.||+..+ +|+|++|++.+|+++
T Consensus 613 ~~~i~~v~~---i~~~~~~~d~l~~g---------------------------------------~S~~~~e~~~la~il 650 (765)
T 1ewq_A 613 EAHLPLFDG---IYTRIGASDDLAGG---------------------------------------KSTFMVEMEEVALIL 650 (765)
T ss_dssp EEEECCCSE---EEEECCC------C---------------------------------------CSHHHHHHHHHHHHH
T ss_pred ccceeeHHH---hhccCCHHHHHHhc---------------------------------------ccHHHHHHHHHHHHH
Confidence 457889887 554 3677766432 478899999999998
Q ss_pred --hCCCCCC
Q 007122 611 --LKAPPIL 617 (617)
Q Consensus 611 --l~~p~IL 617 (617)
+.+|+++
T Consensus 651 ~~a~~p~Ll 659 (765)
T 1ewq_A 651 KEATENSLV 659 (765)
T ss_dssp HHCCTTEEE
T ss_pred HhccCCCEE
Confidence 8888764
No 115
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.13 E-value=1.8e-12 Score=145.60 Aligned_cols=95 Identities=20% Similarity=0.243 Sum_probs=60.1
Q ss_pred ceEEEeEEEeecCC-cccceee----------eEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC-CCCeEEECCEeCCC
Q 007122 458 SIQFDNVHFSYLTE-RKILDGV----------SFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIRIDGQDICE 525 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~-~~vL~~i----------sl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p-~~G~I~idG~~i~~ 525 (617)
.|+++|+++.|+.. +++|+.+ ++++|. +||||+||||||||+++|+|++.| ++|.|.++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 58999999999742 3555544 367765 999999999999999999999988 79999999999632
Q ss_pred C---CHHHHhcceEEEccCCCccc-ccHHHHHhc
Q 007122 526 V---TLESLRKSIGVVPQDTVLFN-DTIFHNIRY 555 (617)
Q Consensus 526 ~---~~~~lr~~i~~V~Qd~~LF~-gTIreNI~~ 555 (617)
. ....+|++++|++|++.+++ .|++|||.+
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~ 120 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINK 120 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHH
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHH
Confidence 1 23568899999999998774 589999865
No 116
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.12 E-value=1.3e-11 Score=145.32 Aligned_cols=111 Identities=16% Similarity=0.190 Sum_probs=77.5
Q ss_pred cceEEEe-----EEEeecCCcccceeeeEEEeC-------CcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCC
Q 007122 457 GSIQFDN-----VHFSYLTERKILDGVSFVVPA-------GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524 (617)
Q Consensus 457 ~~I~~~n-----vsF~Y~~~~~vL~~isl~I~~-------G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~ 524 (617)
..|+++| |++.|+++..|++|++|++++ |+.++|+|||||||||++|.+ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------- 814 (1022)
T ss_dssp CCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------------
T ss_pred ceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------------
Confidence 3699999 999996567899999999987 999999999999999999999 98863
Q ss_pred CCCHHHHhcceE-EEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 007122 525 EVTLESLRKSIG-VVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (617)
Q Consensus 525 ~~~~~~lr~~i~-~V~Qd~~LF~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQR 603 (617)
..++| ||||++. .-|+.|||.. + . ++.+.+. .|. ..+|+++++
T Consensus 815 -------~aqiG~~Vpq~~~--~l~v~d~I~~-r--i------------g~~d~~~---~~~--------stf~~em~~- 858 (1022)
T 2o8b_B 815 -------MAQMGCYVPAEVC--RLTPIDRVFT-R--L------------GASDRIM---SGE--------STFFVELSE- 858 (1022)
T ss_dssp -------HHTTTCCEESSEE--EECCCSBEEE-E--C------------C--------------------CHHHHHHHH-
T ss_pred -------HhheeEEeccCcC--CCCHHHHHHH-H--c------------CCHHHHh---hch--------hhhHHHHHH-
Confidence 34677 9999974 6677777732 1 1 1112111 122 356777665
Q ss_pred HHHHHHHhCCCCCC
Q 007122 604 VALARAFLKAPPIL 617 (617)
Q Consensus 604 laiARAll~~p~IL 617 (617)
+++||++..+|+++
T Consensus 859 ~a~al~la~~~sLl 872 (1022)
T 2o8b_B 859 TASILMHATAHSLV 872 (1022)
T ss_dssp HHHHHHHCCTTCEE
T ss_pred HHHHHHhCCCCcEE
Confidence 99999999999864
No 117
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.11 E-value=3.8e-12 Score=133.47 Aligned_cols=86 Identities=22% Similarity=0.253 Sum_probs=69.3
Q ss_pred EeEEEeecCCcccceee-eEEEeCCcEEEEECCCcchHHHHHHHHhcCC--CCCC----Ce-EEECCEeCCCCCHHHHhc
Q 007122 462 DNVHFSYLTERKILDGV-SFVVPAGKSVAIVGTSGSGKSTILRLLFRSF--DTHS----GS-IRIDGQDICEVTLESLRK 533 (617)
Q Consensus 462 ~nvsF~Y~~~~~vL~~i-sl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~--~p~~----G~-I~idG~~i~~~~~~~lr~ 533 (617)
+.+++.++ .|+++ ++.|++|+.++|+||+|||||||++.+++.+ +|++ |. |++|+.+.. .++
T Consensus 111 ~~isTG~~----~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~ 180 (349)
T 1pzn_A 111 GRISTGSK----SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPE 180 (349)
T ss_dssp CEECCSCH----HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHH
T ss_pred CeecCCCH----HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHH
Confidence 34555443 34443 5799999999999999999999999999998 6666 67 899997641 246
Q ss_pred ceEEEccCCCcccccHHHHHhcCC
Q 007122 534 SIGVVPQDTVLFNDTIFHNIRYGR 557 (617)
Q Consensus 534 ~i~~V~Qd~~LF~gTIreNI~~g~ 557 (617)
++++++|++.++..++.|||.+..
T Consensus 181 ~i~~i~q~~~~~~~~v~~ni~~~~ 204 (349)
T 1pzn_A 181 RIREIAQNRGLDPDEVLKHIYVAR 204 (349)
T ss_dssp HHHHHHHTTTCCHHHHGGGEEEEE
T ss_pred HHHHHHHHcCCCHHHHhhCEEEEe
Confidence 788999999999999999998764
No 118
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.10 E-value=3.9e-13 Score=131.93 Aligned_cols=120 Identities=23% Similarity=0.290 Sum_probs=93.8
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcCC---CCCCCeEEE--------CCEeCCC-CCHHHHhcceEEEccCC------Ccc
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRSF---DTHSGSIRI--------DGQDICE-VTLESLRKSIGVVPQDT------VLF 545 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl~---~p~~G~I~i--------dG~~i~~-~~~~~lr~~i~~V~Qd~------~LF 545 (617)
.+.+++|+|++||||||++++|.+.| .++.|++.. +|.++.+ ....++++++++++|++ .++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35789999999999999999999877 788999987 7887753 55678899999999986 567
Q ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCcccccc-CCCCCCChHHHHHHHHHHHHhCCCC
Q 007122 546 NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG-ERGLKLSGGEKQRVALARAFLKAPP 615 (617)
Q Consensus 546 ~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vg-e~G~~LSGGQrQRlaiARAll~~p~ 615 (617)
..++.+++. ++++.+++..+..++.+.....+.++.+. ++|.-++|+ .++++++++++
T Consensus 84 ~~~v~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d 142 (227)
T 1cke_A 84 GEDVSGEIR-------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAP 142 (227)
T ss_dssp TEECHHHHT-------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCS
T ss_pred CeeCchhhC-------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCC
Confidence 778888763 57888999999999999887777766653 456677776 34455555554
No 119
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.08 E-value=3.7e-11 Score=129.98 Aligned_cols=80 Identities=16% Similarity=0.175 Sum_probs=63.6
Q ss_pred EEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHH--------H
Q 007122 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES--------L 531 (617)
Q Consensus 460 ~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~--------l 531 (617)
.+.++++.. .++|+|+||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.++.+.+... +
T Consensus 8 ~l~~l~~~~---~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~r~~~~~~~~ 83 (483)
T 3euj_A 8 KFRSLTLIN---WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYGKL 83 (483)
T ss_dssp EEEEEEEEE---ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCCCSSCCSCGGGS
T ss_pred ceeEEEEec---cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCchhHHhHHHHHhc
Confidence 355555432 3579999999999 999999999999999999999999999999999999987655332 2
Q ss_pred hcceEEEccCCC
Q 007122 532 RKSIGVVPQDTV 543 (617)
Q Consensus 532 r~~i~~V~Qd~~ 543 (617)
+..+.|+.+++.
T Consensus 84 ~~~~~~~~~~~~ 95 (483)
T 3euj_A 84 KAGVCYAVLETV 95 (483)
T ss_dssp CSSEEEEEEEEE
T ss_pred CCCceEEEEehh
Confidence 334567766653
No 120
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.04 E-value=1.7e-11 Score=120.13 Aligned_cols=90 Identities=20% Similarity=0.267 Sum_probs=66.8
Q ss_pred EEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC-------CCCeEEECCEeCCCCCHHHHh
Q 007122 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-------HSGSIRIDGQDICEVTLESLR 532 (617)
Q Consensus 460 ~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p-------~~G~I~idG~~i~~~~~~~lr 532 (617)
+++.+++.++.-..+|.+ -|++|+.++|+||||||||||++.|+|++.| ..|.|++++.+. .. +
T Consensus 3 ~~~~i~tG~~~LD~~l~g---gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~ 73 (231)
T 4a74_A 3 TIGRISTGSKSLDKLLGG---GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----P 73 (231)
T ss_dssp CCCEECCSCHHHHHHTTS---SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----H
T ss_pred cCCccCCCChhHHhHhcC---CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----H
Confidence 345566655432234433 6999999999999999999999999996655 445788887542 11 2
Q ss_pred cceEEEccCCCcccccHHHHHhcCCC
Q 007122 533 KSIGVVPQDTVLFNDTIFHNIRYGRL 558 (617)
Q Consensus 533 ~~i~~V~Qd~~LF~gTIreNI~~g~~ 558 (617)
.++++++|+..++..|+.||+.+..+
T Consensus 74 ~~i~~~~~~~~~~~~~~~~~~~~~~~ 99 (231)
T 4a74_A 74 ERIREIAQNRGLDPDEVLKHIYVARA 99 (231)
T ss_dssp HHHHHHHHHTTSCHHHHHHTEEEEEC
T ss_pred HHHHHHHHHcCCCHHHHhhcEEEEec
Confidence 35778889988888899999988754
No 121
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.98 E-value=1e-10 Score=122.63 Aligned_cols=78 Identities=21% Similarity=0.226 Sum_probs=57.2
Q ss_pred EeEEEeecC-CcccceeeeE-------EEeCCcEEEEECCCcchHHHHHHHHhcCCCCC-CCeEEECCEeCCCCCHHHHh
Q 007122 462 DNVHFSYLT-ERKILDGVSF-------VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-SGSIRIDGQDICEVTLESLR 532 (617)
Q Consensus 462 ~nvsF~Y~~-~~~vL~~isl-------~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~-~G~I~idG~~i~~~~~~~lr 532 (617)
.+++|+|.+ ..+.|+++.+ .+++|+.++|+|||||||||++++|+|+++|+ +|.|...+.++ ++. .+
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~~ 167 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---HE 167 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---CC
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---hh
Confidence 577888853 4467777776 77899999999999999999999999999997 56665544333 222 23
Q ss_pred cceEEEccCCC
Q 007122 533 KSIGVVPQDTV 543 (617)
Q Consensus 533 ~~i~~V~Qd~~ 543 (617)
...++++|...
T Consensus 168 ~~~~~v~q~~~ 178 (356)
T 3jvv_A 168 SKKCLVNQREV 178 (356)
T ss_dssp CSSSEEEEEEB
T ss_pred ccccceeeeee
Confidence 34567777543
No 122
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.95 E-value=1.2e-10 Score=119.26 Aligned_cols=73 Identities=19% Similarity=0.237 Sum_probs=45.3
Q ss_pred EEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEE---CCEeCCCCCHHHHhcceEEEccCCCccc-----ccHHH
Q 007122 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI---DGQDICEVTLESLRKSIGVVPQDTVLFN-----DTIFH 551 (617)
Q Consensus 480 l~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~i---dG~~i~~~~~~~lr~~i~~V~Qd~~LF~-----gTIre 551 (617)
+++.+|++++|+|+||+|||||++.|+|+..|..|+|.+ +|.++.... ..++..+++|+|+|-++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 567799999999999999999999999999999999999 888776532 222223899999997764 578 9
Q ss_pred HHh
Q 007122 552 NIR 554 (617)
Q Consensus 552 NI~ 554 (617)
|+.
T Consensus 246 ~l~ 248 (307)
T 1t9h_A 246 ELG 248 (307)
T ss_dssp HHG
T ss_pred HHH
Confidence 983
No 123
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.95 E-value=3.8e-11 Score=117.36 Aligned_cols=88 Identities=11% Similarity=0.096 Sum_probs=65.0
Q ss_pred EEEeCCcEEEEECCCcchHHHHHHHHhcCCCC--CCCeEEECCEeCCCCCHHHHhcceEEEccCCCccccc-H----HHH
Q 007122 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT--HSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDT-I----FHN 552 (617)
Q Consensus 480 l~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p--~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gT-I----reN 552 (617)
-..++|+.++|+||||||||||+++|+|+++| ..|.|.+++.+.+. ..++.++|++|++.+|... . .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 46789999999999999999999999999986 78999998876543 2356899999999998764 4 478
Q ss_pred HhcCCC--CCCHHHHHHHHHH
Q 007122 553 IRYGRL--SATEEEVYDAARR 571 (617)
Q Consensus 553 I~~g~~--~~~de~i~~a~~~ 571 (617)
+.+... ..+.+++.++++.
T Consensus 87 ~~~~~~~yg~~~~~v~~~l~~ 107 (219)
T 1s96_A 87 AEVFGNYYGTSREAIEQVLAT 107 (219)
T ss_dssp EEETTEEEEEEHHHHHHHHTT
T ss_pred HHHHhccCCCCHHHHHHHHhc
Confidence 765321 1235566666553
No 124
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.95 E-value=1.9e-10 Score=119.20 Aligned_cols=76 Identities=20% Similarity=0.190 Sum_probs=64.1
Q ss_pred EEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHH----HHhcc--eEEEccCCCccc-ccHHHHH
Q 007122 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE----SLRKS--IGVVPQDTVLFN-DTIFHNI 553 (617)
Q Consensus 481 ~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~----~lr~~--i~~V~Qd~~LF~-gTIreNI 553 (617)
..++|+.++|||||||||||+++.|+|++.|++|+|.++|.|+...... .++++ +.+++|+..++. .|++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999999999877643 24444 559999988774 5899999
Q ss_pred hcC
Q 007122 554 RYG 556 (617)
Q Consensus 554 ~~g 556 (617)
.++
T Consensus 205 ~~~ 207 (328)
T 3e70_C 205 QHA 207 (328)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 125
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.94 E-value=9.2e-11 Score=112.23 Aligned_cols=83 Identities=20% Similarity=0.337 Sum_probs=68.5
Q ss_pred eEEEeCCcEEEEECCCcchHHHHHHHHhcCCC-------------CCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcc
Q 007122 479 SFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-------------THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF 545 (617)
Q Consensus 479 sl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~-------------p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF 545 (617)
|+...+|+.++|+||||||||||++.|++.++ |..|+ +||+++.-++.+.+++.+ .|+.+++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 34455899999999999999999999999886 78888 799999999999999875 6999999
Q ss_pred cccHHHHHhcCCCCCCHHHHHHHHH
Q 007122 546 NDTIFHNIRYGRLSATEEEVYDAAR 570 (617)
Q Consensus 546 ~gTIreNI~~g~~~~~de~i~~a~~ 570 (617)
.+++.+|. ||.+ .+.+.++++
T Consensus 88 ~~~~~~n~-YGt~---~~~v~~~l~ 108 (197)
T 3ney_A 88 FGSYQGNM-FGTK---FETVHQIHK 108 (197)
T ss_dssp EEEETTEE-EEEE---HHHHHHHHH
T ss_pred hhhhhcee-cccc---hhhHHHHHh
Confidence 99999994 8854 444555544
No 126
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.94 E-value=1.8e-12 Score=131.69 Aligned_cols=133 Identities=18% Similarity=0.226 Sum_probs=94.0
Q ss_pred EEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc
Q 007122 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP 539 (617)
Q Consensus 460 ~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~ 539 (617)
+++++...|. ...+++++++++++| ++|+||+|||||||++.|++... .|.|.+++.++.+......++.+.+++
T Consensus 51 ~l~~l~~~~~-~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~ 125 (278)
T 1iy2_A 51 ELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLF 125 (278)
T ss_dssp HHHHHHHHHH-CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHH
Confidence 4556666664 346899999999999 99999999999999999999875 899999998776555555666788888
Q ss_pred cCCC-cc-cccHHHHH-hcCCCCC-----CHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh
Q 007122 540 QDTV-LF-NDTIFHNI-RYGRLSA-----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (617)
Q Consensus 540 Qd~~-LF-~gTIreNI-~~g~~~~-----~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll 611 (617)
|++. .+ .-++.||| .++.... .+++..+.+ .+++ ..|||||+||..+|+|+.
T Consensus 126 ~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~-----~~ll---------------~~lsgg~~~~~~i~~a~t 185 (278)
T 1iy2_A 126 ETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL---------------VEMDGFEKDTAIVVMAAT 185 (278)
T ss_dssp HHHHTSCSEEEEEETHHHHHCC--------CHHHHHHH-----HHHH---------------HHHTTCCTTCCEEEEEEE
T ss_pred HHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHH-----HHHH---------------HHHhCCCCCCCEEEEEec
Confidence 8764 33 34667777 3332111 112222221 1122 137899999999999999
Q ss_pred CCCCCC
Q 007122 612 KAPPIL 617 (617)
Q Consensus 612 ~~p~IL 617 (617)
.+|++|
T Consensus 186 ~~p~~l 191 (278)
T 1iy2_A 186 NRPDIL 191 (278)
T ss_dssp SCTTSS
T ss_pred CCchhC
Confidence 999875
No 127
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.93 E-value=1.5e-10 Score=111.43 Aligned_cols=129 Identities=18% Similarity=0.164 Sum_probs=83.1
Q ss_pred eEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccc-cHHHHHhcCC
Q 007122 479 SFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNIRYGR 557 (617)
Q Consensus 479 sl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~g-TIreNI~~g~ 557 (617)
|+++++|+.++|+||||||||||+++|+|+++ .+.+++.++........+..++|++|++.+|.. +..+|+....
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 57788999999999999999999999999973 688998888776666667889999999988765 3344432210
Q ss_pred C------CCCHHHHHHHHHHH----------cHHHHHHhCCCCcc------------ccccCCCCCCChHHHHHHHHHHH
Q 007122 558 L------SATEEEVYDAARRA----------AIHDTIMNFPAKYS------------TVVGERGLKLSGGEKQRVALARA 609 (617)
Q Consensus 558 ~------~~~de~i~~a~~~a----------~l~~~I~~lp~Gld------------T~vge~G~~LSGGQrQRlaiARA 609 (617)
. ....+++.++++.. ++.......|+.+- ..+-++|..-....++|++-++.
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~ 156 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALARE 156 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHH
T ss_pred eeecccccchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 0 11234455554431 33333444444311 12335665555667888888776
Q ss_pred Hh
Q 007122 610 FL 611 (617)
Q Consensus 610 ll 611 (617)
..
T Consensus 157 ~~ 158 (205)
T 3tr0_A 157 EM 158 (205)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 128
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.92 E-value=2.6e-11 Score=115.41 Aligned_cols=117 Identities=22% Similarity=0.393 Sum_probs=62.9
Q ss_pred CcEEEEECCCcchHHHHHHHHhcCCC-------------CCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHH
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFRSFD-------------THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFH 551 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~gl~~-------------p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIre 551 (617)
|+.++|+||||||||||+++|+|+++ |.+|++ +|.++...+.+.+...+ .|+.+++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 67899999999999999999999998 889986 89888877877776653 3677777888777
Q ss_pred HHhcCCCCCCHHHHHHHHHH----------HcHHHHHHh--------------CCCCccccccCCCCCCChHHHHHHHHH
Q 007122 552 NIRYGRLSATEEEVYDAARR----------AAIHDTIMN--------------FPAKYSTVVGERGLKLSGGEKQRVALA 607 (617)
Q Consensus 552 NI~~g~~~~~de~i~~a~~~----------a~l~~~I~~--------------lp~GldT~vge~G~~LSGGQrQRlaiA 607 (617)
|+ ||.+ .+++.++++. .++.. +.. -++-+...+.++|..-....+||++-|
T Consensus 76 ~~-yg~~---~~~i~~~l~~g~~~il~~~~~g~~~-l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~ 150 (186)
T 3a00_A 76 NY-YGST---VASVKQVSKSGKTCILDIDMQGVKS-VKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAA 150 (186)
T ss_dssp EE-EEEE---HHHHHHHHHTTCEEEEECCHHHHHH-HHTCGGGCCEEEEEECSCC-------------------------
T ss_pred ee-ccCc---HHHHHHHHHcCCeEEEEEcHHHHHH-HHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 76 6643 4455555443 12222 222 125666677788888888899999999
Q ss_pred HHHh
Q 007122 608 RAFL 611 (617)
Q Consensus 608 RAll 611 (617)
++-+
T Consensus 151 ~~~~ 154 (186)
T 3a00_A 151 QAEL 154 (186)
T ss_dssp ----
T ss_pred HHHH
Confidence 8755
No 129
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.92 E-value=4e-11 Score=117.57 Aligned_cols=75 Identities=16% Similarity=0.181 Sum_probs=52.8
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCH--------H
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL--------E 529 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~--------~ 529 (617)
.|+++|+...|.. ++++++ +.++|+||||||||||+++|+|++.|++|+|.++|.++...++ .
T Consensus 9 ~l~l~~~~~~~~~--------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (227)
T 1qhl_A 9 SLTLINWNGFFAR--------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHG 79 (227)
T ss_dssp EEEEEEETTEEEE--------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGG
T ss_pred EEEEEeeecccCC--------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhh
Confidence 6889998665531 566667 8999999999999999999999999999999999998844332 2
Q ss_pred HHhcceEEEccC
Q 007122 530 SLRKSIGVVPQD 541 (617)
Q Consensus 530 ~lr~~i~~V~Qd 541 (617)
..+..+++|+|+
T Consensus 80 ~~~~~i~~v~~~ 91 (227)
T 1qhl_A 80 KLKAGVCYSMLD 91 (227)
T ss_dssp GBCSSEEEEEEE
T ss_pred HhhcCcEEEEEe
Confidence 346789999985
No 130
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.90 E-value=1.7e-09 Score=113.18 Aligned_cols=33 Identities=27% Similarity=0.492 Sum_probs=31.1
Q ss_pred cceeeeEEEeCCcEEEEECCCcchHHHHHHHHhc
Q 007122 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 474 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~g 507 (617)
.++++++++++| .++|+|||||||||++++|.+
T Consensus 16 ~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 16 NLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp TCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 578999999999 999999999999999999986
No 131
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.89 E-value=1.6e-10 Score=113.89 Aligned_cols=58 Identities=22% Similarity=0.320 Sum_probs=35.5
Q ss_pred ccceeeeEEEeCCcEEEEECCCcchHHHHHHHHh-cCC------------CCCCCeEEECCEeCCCCCHHHHh
Q 007122 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF-RSF------------DTHSGSIRIDGQDICEVTLESLR 532 (617)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~-gl~------------~p~~G~I~idG~~i~~~~~~~lr 532 (617)
...+++||++++|+.++|+||||||||||+++|+ |++ +|..|++ +|.++...+...+.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~ 85 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFL 85 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhh
Confidence 4578999999999999999999999999999999 999 7777766 66555555555444
No 132
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.86 E-value=2.6e-12 Score=128.50 Aligned_cols=135 Identities=18% Similarity=0.216 Sum_probs=93.7
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~ 537 (617)
..+++++...|. +..+++++++++++| ++|+||+|||||||++.+++... .|.|.++|.++.+......++.+..
T Consensus 25 ~~~l~~l~~~~~-~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 99 (254)
T 1ixz_A 25 KEELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 99 (254)
T ss_dssp HHHHHHHHHHHH-CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHH
Confidence 345677776664 346899999999999 99999999999999999999875 8999999987755554555667888
Q ss_pred EccCCC-cc-cccHHHHH-hcCCCCC-----CHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 007122 538 VPQDTV-LF-NDTIFHNI-RYGRLSA-----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (617)
Q Consensus 538 V~Qd~~-LF-~gTIreNI-~~g~~~~-----~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARA 609 (617)
++|+.. .+ .-++.||| .++.... .+++..+.+ .+.+. .|||||+||..+|+|
T Consensus 100 ~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~-----~~ll~---------------~l~g~~~~~~~i~~a 159 (254)
T 1ixz_A 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------EMDGFEKDTAIVVMA 159 (254)
T ss_dssp HHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHH-----HHHHH---------------HHHTCCTTCCEEEEE
T ss_pred HHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH-----HHHHH---------------HHhCCCCCCCEEEEE
Confidence 888753 23 34566777 3432110 112221211 11121 367899999999999
Q ss_pred HhCCCCCC
Q 007122 610 FLKAPPIL 617 (617)
Q Consensus 610 ll~~p~IL 617 (617)
+..+|++|
T Consensus 160 ~t~~p~~l 167 (254)
T 1ixz_A 160 ATNRPDIL 167 (254)
T ss_dssp EESCGGGS
T ss_pred ccCCchhC
Confidence 98888754
No 133
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.85 E-value=1.9e-10 Score=108.76 Aligned_cols=81 Identities=16% Similarity=0.249 Sum_probs=62.9
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCCCC-CCCeEE----------ECCEeCCCCCHHHHhcceEEEccCCCcccccHHH
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIR----------IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFH 551 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~~p-~~G~I~----------idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIre 551 (617)
.+|+.++|+||||||||||+++|++++++ ..|.|. +||.++..++.+.+++. +.|+.+++.+++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 36999999999999999999999998863 445543 47777777888888763 67899999999999
Q ss_pred HHhcCCCCCCHHHHHHHHH
Q 007122 552 NIRYGRLSATEEEVYDAAR 570 (617)
Q Consensus 552 NI~~g~~~~~de~i~~a~~ 570 (617)
| .+|.+ .+++.++++
T Consensus 80 n-~yg~~---~~~i~~~l~ 94 (180)
T 1kgd_A 80 A-MYGTK---LETIRKIHE 94 (180)
T ss_dssp E-EEEEE---HHHHHHHHH
T ss_pred c-ccccc---HHHHHHHHH
Confidence 9 56643 455555554
No 134
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.79 E-value=4e-12 Score=132.64 Aligned_cols=94 Identities=14% Similarity=0.216 Sum_probs=70.9
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCC-------cEEEEECCCcchHHHHHHHHhcCC----CCCCCeEEECCEeCCCCC
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAG-------KSVAIVGTSGSGKSTILRLLFRSF----DTHSGSIRIDGQDICEVT 527 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G-------~~vaIVG~SGsGKSTL~~LL~gl~----~p~~G~I~idG~~i~~~~ 527 (617)
++.++++..|. .+.+++++++.|++| +.++|+||+|+|||||++++++.. .|.+|.+..++.++.++.
T Consensus 19 lr~~~l~~~~g-~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~ 97 (334)
T 1in4_A 19 LRPKSLDEFIG-QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAIL 97 (334)
T ss_dssp TSCSSGGGCCS-CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHH
T ss_pred cCCccHHHccC-cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHH
Confidence 44455555554 457899999999887 899999999999999999999988 678888877766553321
Q ss_pred HHHHhcceEEEccCCCcccccHHHHHh
Q 007122 528 LESLRKSIGVVPQDTVLFNDTIFHNIR 554 (617)
Q Consensus 528 ~~~lr~~i~~V~Qd~~LF~gTIreNI~ 554 (617)
....+..|.+++|...++. |+.|++.
T Consensus 98 ~~~~~~~v~~iDE~~~l~~-~~~e~L~ 123 (334)
T 1in4_A 98 TSLERGDVLFIDEIHRLNK-AVEELLY 123 (334)
T ss_dssp HHCCTTCEEEEETGGGCCH-HHHHHHH
T ss_pred HHccCCCEEEEcchhhcCH-HHHHHHH
Confidence 1112457999999877765 7888774
No 135
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.72 E-value=3.3e-10 Score=120.90 Aligned_cols=123 Identities=19% Similarity=0.148 Sum_probs=72.8
Q ss_pred ceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHh
Q 007122 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIR 554 (617)
Q Consensus 475 L~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~ 554 (617)
-++++|++++|+.++|||++|||||||++.|++..+ .+.+.+... +...+++|+|+.. ..-++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT-----l~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT-----LSPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS-----SCCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce-----ecceeeEEEecCc-ceEEEEeccc
Confidence 579999999999999999999999999999999743 344444332 3345777777641 1122333221
Q ss_pred cCC-----CCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 555 YGR-----LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 555 ~g~-----~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
+.. .....+ ..+..+.+ +..+.- +|-. .+.-.+||+||+||+++||||..+|.||
T Consensus 215 li~~a~~~~~L~~~-fl~~~era--~~lL~v----vDls-~~~~~~ls~g~~el~~la~aL~~~P~IL 274 (416)
T 1udx_A 215 IIEGASEGKGLGLE-FLRHIART--RVLLYV----LDAA-DEPLKTLETLRKEVGAYDPALLRRPSLV 274 (416)
T ss_dssp CCCCGGGSCCSCHH-HHHHHTSS--SEEEEE----EETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEE
T ss_pred cccchhhhhhhhHH-HHHHHHHH--HhhhEE----eCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEE
Confidence 110 001111 11111111 000100 1100 1122369999999999999999999864
No 136
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.70 E-value=1.1e-08 Score=103.63 Aligned_cols=111 Identities=16% Similarity=0.173 Sum_probs=70.6
Q ss_pred EEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHh-cCCCC
Q 007122 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIR-YGRLS 559 (617)
Q Consensus 481 ~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~-~g~~~ 559 (617)
.+++|+.++|+|++|||||||++.+++... .|++.. |.+..+ +..+.|+..+... ..+.+++. ++. +
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~-g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-~ 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLL-EVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-H 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTT-CCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT-T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcC-CCccCC------CccEEEEECCCCH--HHHHHHHHHHHh-h
Confidence 488999999999999999999999998654 576643 443321 2467788776543 33434432 232 2
Q ss_pred CCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 007122 560 ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (617)
Q Consensus 560 ~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~~p~IL 617 (617)
..+++..+.++... +....+.....||+||+|++ |+++++|+++
T Consensus 94 ~~~~~~~~~~~~l~-----------l~~~~~~~~~~ls~g~~~~i---~~l~~~~~li 137 (279)
T 1nlf_A 94 LSAEERQAVADGLL-----------IQPLIGSLPNIMAPEWFDGL---KRAAEGRRLM 137 (279)
T ss_dssp SCHHHHHHHHHHEE-----------ECCCTTSCCCTTSHHHHHHH---HHHHTTCSEE
T ss_pred cChhhhhhccCceE-----------EeecCCCCcccCCHHHHHHH---HHhcCCCCEE
Confidence 34443333333332 22233455678999998865 7888999864
No 137
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.66 E-value=2.8e-09 Score=102.82 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=45.6
Q ss_pred EEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCC
Q 007122 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL 558 (617)
Q Consensus 480 l~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~ 558 (617)
=++++|+.++|+|++||||||++++|.+.++ .+.+++||++++++ +|+.++.+
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~~~ 68 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETDKN 68 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBCTT
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcccc
Confidence 3688999999999999999999999999875 37899999999987 67766543
No 138
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.66 E-value=1.8e-09 Score=107.06 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=59.6
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHh--cCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF--RSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~--gl~~p~~G~I~idG~~i~~~~~~~lr~~i 535 (617)
.++++++++.|+.-..++.+ .|++|+.++|+||||||||||++.|+ |+.++.+|.+.+++.+..+ .....++++
T Consensus 6 ~~~~~~i~tg~~~lD~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 81 (251)
T 2ehv_A 6 YQPVRRVKSGIPGFDELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMASF 81 (251)
T ss_dssp --CCCEECCSCTTTGGGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHTT
T ss_pred ccccceeecCCHhHHHHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHHc
Confidence 46677788777653345554 79999999999999999999999999 7757788888887743221 122344678
Q ss_pred EEEccCCC
Q 007122 536 GVVPQDTV 543 (617)
Q Consensus 536 ~~V~Qd~~ 543 (617)
++++|+..
T Consensus 82 g~~~~~~~ 89 (251)
T 2ehv_A 82 GWDFEKYE 89 (251)
T ss_dssp TCCHHHHH
T ss_pred CCChHHHh
Confidence 88888753
No 139
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.64 E-value=2.3e-09 Score=106.68 Aligned_cols=52 Identities=31% Similarity=0.489 Sum_probs=36.0
Q ss_pred ceEEEeE-EEeecCCcccceeeeEEEeC---CcEEEEECCCcchHHHHHHHHhcCC
Q 007122 458 SIQFDNV-HFSYLTERKILDGVSFVVPA---GKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 458 ~I~~~nv-sF~Y~~~~~vL~~isl~I~~---G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
.|+++|+ +|+|.++.++|+|+||+|++ |+.++|+|++||||||++++|++.+
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6899999 99995566899999999999 9999999999999999999998854
No 140
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.60 E-value=4.4e-09 Score=101.10 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=39.5
Q ss_pred EEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCC
Q 007122 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDT 542 (617)
Q Consensus 480 l~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~ 542 (617)
++|++|+.++|+|+|||||||++++|++++.|+.| +.+ +....+... ..+..++|++|++
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~~-~~~~~~~~~~~~~ 60 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMRE-GEVDGVDYFFKTR 60 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCCT-TCCBTTTBEECCH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCCC-CccCCCceEEcCH
Confidence 46899999999999999999999999999977655 222 222222211 1123467777764
No 141
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.59 E-value=2.5e-08 Score=105.98 Aligned_cols=114 Identities=19% Similarity=0.254 Sum_probs=68.6
Q ss_pred EEeCCcEEEEECCCcchHHHHHHH--HhcCCCCCCC-----eEEECCEeC-CCCCHHHHhcceEEEccCCCcccccHHHH
Q 007122 481 VVPAGKSVAIVGTSGSGKSTILRL--LFRSFDTHSG-----SIRIDGQDI-CEVTLESLRKSIGVVPQDTVLFNDTIFHN 552 (617)
Q Consensus 481 ~I~~G~~vaIVG~SGsGKSTL~~L--L~gl~~p~~G-----~I~idG~~i-~~~~~~~lr~~i~~V~Qd~~LF~gTIreN 552 (617)
-|++|+.++|+||||||||||++. +.++.+|+.| .|++++.+. .......+++++++.+| ++.||
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 589999999999999999999994 4577766444 889998753 22223345667787766 68899
Q ss_pred HhcCCCCCCHHHHHHHHHHHcHHHHHHhC-CC--CccccccCCCCCCCh----HHHHHH
Q 007122 553 IRYGRLSATEEEVYDAARRAAIHDTIMNF-PA--KYSTVVGERGLKLSG----GEKQRV 604 (617)
Q Consensus 553 I~~g~~~~~de~i~~a~~~a~l~~~I~~l-p~--GldT~vge~G~~LSG----GQrQRl 604 (617)
+.+..+ .+.++..+.++.+ .+.+... |. -+|.+-.--...+|| |||||.
T Consensus 247 i~~~~~-~~~~~~~~~l~~~--~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~ 302 (400)
T 3lda_A 247 VAYARA-YNADHQLRLLDAA--AQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMH 302 (400)
T ss_dssp EEEEEC-CSHHHHHHHHHHH--HHHHHHSCEEEEEEETGGGGCC------CCHHHHHHH
T ss_pred EEEecc-CChHHHHHHHHHH--HHHHHhcCCceEEecchhhhCchhhcCccchHHHHHH
Confidence 988754 3444444444332 2233332 11 133333333345664 888884
No 142
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.59 E-value=2.2e-08 Score=98.58 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=58.3
Q ss_pred EEeCCcEEEEECCCcchHHHHHHHHhc--CCCC-----CCCeEEECCEeCCC-CCHHHHhcceEEEccCCCcccccHHHH
Q 007122 481 VVPAGKSVAIVGTSGSGKSTILRLLFR--SFDT-----HSGSIRIDGQDICE-VTLESLRKSIGVVPQDTVLFNDTIFHN 552 (617)
Q Consensus 481 ~I~~G~~vaIVG~SGsGKSTL~~LL~g--l~~p-----~~G~I~idG~~i~~-~~~~~lr~~i~~V~Qd~~LF~gTIreN 552 (617)
-|++|+.++|+||+|||||||++.+++ ..+| .+|.+++++.+... -....+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 589999999999999999999999999 5655 67889999865211 1133455678887765 6788
Q ss_pred HhcCCCCCCHHHHHHHH
Q 007122 553 IRYGRLSATEEEVYDAA 569 (617)
Q Consensus 553 I~~g~~~~~de~i~~a~ 569 (617)
+.+..+ .+.++..+.+
T Consensus 93 ~~~~~~-~~~~~~~~~~ 108 (243)
T 1n0w_A 93 VAYARA-FNTDHQTQLL 108 (243)
T ss_dssp EEEEEC-CSHHHHHHHH
T ss_pred eEEEec-CCHHHHHHHH
Confidence 876543 3445544443
No 143
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.57 E-value=3.1e-09 Score=100.29 Aligned_cols=66 Identities=21% Similarity=0.212 Sum_probs=47.4
Q ss_pred eeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCE--eCCCCC----HHHHhcceEEEccCC
Q 007122 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ--DICEVT----LESLRKSIGVVPQDT 542 (617)
Q Consensus 476 ~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~--~i~~~~----~~~lr~~i~~V~Qd~ 542 (617)
+++++++.+| .++|+|+||||||||+++|.++..+..|...-.+. ++-... ....+..|.++.|++
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 5788999999 99999999999999999999988887775433221 110000 002345789999985
No 144
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.56 E-value=1.2e-08 Score=104.64 Aligned_cols=46 Identities=22% Similarity=0.306 Sum_probs=41.0
Q ss_pred eeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeC
Q 007122 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI 523 (617)
Q Consensus 478 isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i 523 (617)
++++.++|+.++|+|++||||||+++.|++++.+..|+|.+.+.|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 3555778999999999999999999999999999999999887765
No 145
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.55 E-value=1.5e-07 Score=97.99 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=24.7
Q ss_pred eeeEEEeCCcEEEEECCCcchHHHHHHHH-hcCCCC
Q 007122 477 GVSFVVPAGKSVAIVGTSGSGKSTILRLL-FRSFDT 511 (617)
Q Consensus 477 ~isl~I~~G~~vaIVG~SGsGKSTL~~LL-~gl~~p 511 (617)
+..++..+| ..+|+||||||||||+.+| .++|.+
T Consensus 16 ~~~i~f~~~-~~~i~G~NGsGKS~lleAi~~~l~~~ 50 (339)
T 3qkt_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVGLYWP 50 (339)
T ss_dssp EEEEECCSE-EEEEECCTTSSHHHHHHHHHHHHHCS
T ss_pred CeEEcCCCC-eEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 344455554 8899999999999999976 344443
No 146
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.55 E-value=1.6e-07 Score=109.36 Aligned_cols=58 Identities=22% Similarity=0.210 Sum_probs=45.9
Q ss_pred cceEEEeEEEeecC----CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHH--------hcCCCCCCC
Q 007122 457 GSIQFDNVHFSYLT----ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLL--------FRSFDTHSG 514 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~----~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL--------~gl~~p~~G 514 (617)
+.|++++...-+-. ++.|++|++|++++|+.++|+|||||||||++|.+ .|.+-|.++
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~ 699 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES 699 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEE
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccc
Confidence 35888876433311 34799999999999999999999999999999999 666655543
No 147
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.52 E-value=2.4e-08 Score=115.97 Aligned_cols=49 Identities=14% Similarity=0.202 Sum_probs=41.1
Q ss_pred cceEEEeEEEeec--------CCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhc
Q 007122 457 GSIQFDNVHFSYL--------TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 457 ~~I~~~nvsF~Y~--------~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~g 507 (617)
+.|++++.. +| +++.|++|++|++++|+.++|+|||||||||++|.+.+
T Consensus 639 ~~i~i~~~r--HP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 639 RKIVIKNGR--HPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CEEEEEEEC--CHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CcEEEEecc--chhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 357777643 33 24689999999999999999999999999999999875
No 148
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.48 E-value=3.7e-09 Score=101.62 Aligned_cols=51 Identities=27% Similarity=0.421 Sum_probs=44.9
Q ss_pred ccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeE--EECCEeCC
Q 007122 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI--RIDGQDIC 524 (617)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I--~idG~~i~ 524 (617)
...+..++..++|+.++|+|+|||||||++++|++.+. ..|.+ ++||.++.
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 45677788889999999999999999999999999987 78998 89986654
No 149
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.47 E-value=1.9e-08 Score=96.55 Aligned_cols=69 Identities=19% Similarity=0.164 Sum_probs=49.0
Q ss_pred eEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHH-HhcceEEEccCCCcccc-cHHHHH
Q 007122 479 SFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES-LRKSIGVVPQDTVLFND-TIFHNI 553 (617)
Q Consensus 479 sl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~-lr~~i~~V~Qd~~LF~g-TIreNI 553 (617)
.++.++|+.++|+|++||||||++++|++.+ |.+.+||.++.. ... .+..+++++|++..+.. ++.+|+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 93 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS--PENIATMQRGIPLTDEDRWPWLRSLAEW 93 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC--HHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc--HHHHHHHhcCCCCCCcccccHHHHHHHH
Confidence 3667899999999999999999999999987 999999977652 222 22357888888655432 455555
No 150
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.46 E-value=1.8e-08 Score=97.37 Aligned_cols=70 Identities=29% Similarity=0.385 Sum_probs=53.5
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCCCC-CCCeEE----------ECCEeCCCCCHHHHhcceEEEccCCCcccccHHH
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIR----------IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFH 551 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~~p-~~G~I~----------idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIre 551 (617)
++|+.++|+||||||||||++.|++.++| ..+.+. .+|++...++.+.+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 68999999999999999999999999976 333332 457777777777777654 5777777777666
Q ss_pred HHhcC
Q 007122 552 NIRYG 556 (617)
Q Consensus 552 NI~~g 556 (617)
| .||
T Consensus 83 ~-~yg 86 (208)
T 3tau_A 83 N-YYG 86 (208)
T ss_dssp E-EEE
T ss_pred c-cCC
Confidence 6 354
No 151
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.42 E-value=4.6e-08 Score=94.75 Aligned_cols=47 Identities=21% Similarity=0.111 Sum_probs=35.9
Q ss_pred cccceeeeE-EEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECC
Q 007122 472 RKILDGVSF-VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (617)
Q Consensus 472 ~~vL~~isl-~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG 520 (617)
-+.|+++.. .+++|+.++|+|++|||||||++.+++ .+..+.++++.
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~ 53 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDT 53 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEES
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEEC
Confidence 345666554 699999999999999999999999999 33334445443
No 152
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.41 E-value=1.5e-08 Score=100.66 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=54.5
Q ss_pred CCcEEEEECCCcchHHHHHHHHh---cCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcc-cccHHHHHhc
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLF---RSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF-NDTIFHNIRY 555 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~---gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF-~gTIreNI~~ 555 (617)
++++++|+|++||||||++++|+ |+..|+.|+|.++|.+.. ..+...+..++|++.++ +.|+.+|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~ 97 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMS 97 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 47999999999999999999999 999999999999876532 13445566777877655 4588998853
No 153
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.41 E-value=3.1e-08 Score=93.99 Aligned_cols=61 Identities=28% Similarity=0.214 Sum_probs=46.4
Q ss_pred CcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcc-cccHHHHHh
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF-NDTIFHNIR 554 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF-~gTIreNI~ 554 (617)
|+.++|+|+|||||||+++.|++ |.+|.+.+||.++.+. ..+++++|+...+ ..|+++|+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~ 63 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNIT 63 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHH
Confidence 78999999999999999999997 7789999998654321 2467788765332 446777764
No 154
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.41 E-value=3.5e-08 Score=96.32 Aligned_cols=52 Identities=15% Similarity=0.126 Sum_probs=45.4
Q ss_pred CcccceeeeE-EEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEe
Q 007122 471 ERKILDGVSF-VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD 522 (617)
Q Consensus 471 ~~~vL~~isl-~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~ 522 (617)
+-+.|+++.. .+++|+.++|+||+|||||||++.+++...+.+|.|.+.+.+
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 4467888887 899999999999999999999999999888888888876543
No 155
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.40 E-value=6e-08 Score=100.07 Aligned_cols=82 Identities=17% Similarity=0.204 Sum_probs=64.9
Q ss_pred cceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCH----HHH-----hcceEEE-ccCCC
Q 007122 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL----ESL-----RKSIGVV-PQDTV 543 (617)
Q Consensus 474 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~----~~l-----r~~i~~V-~Qd~~ 543 (617)
++++++|++++|+.++++|++|+||||++..|++.+.+..|+|.+.+.|...... ..| +..+.++ +|+..
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 3467888899999999999999999999999999999999999998888765432 345 6689999 77755
Q ss_pred cccc-cHHHHHhc
Q 007122 544 LFND-TIFHNIRY 555 (617)
Q Consensus 544 LF~g-TIreNI~~ 555 (617)
.... ++.+|+..
T Consensus 174 ~~p~~~~~~~l~~ 186 (320)
T 1zu4_A 174 ADPASVVFDAIKK 186 (320)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 5433 56788754
No 156
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.38 E-value=5e-08 Score=101.37 Aligned_cols=53 Identities=21% Similarity=0.299 Sum_probs=50.4
Q ss_pred cceEEEeEEEeecCCcccce--------------eeeEEEeCCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 457 GSIQFDNVHFSYLTERKILD--------------GVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~--------------~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+.|+|+||+|.||+++.+|+ |+++.|.+|++++|+|++|+|||||++.|++..
T Consensus 132 ~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 132 NKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 58999999999998888999 999999999999999999999999999999975
No 157
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.29 E-value=2.6e-07 Score=88.48 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=24.8
Q ss_pred eecC--CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 467 SYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 467 ~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+|++ ..+.++|+||++++|+.++|+|++||||||+++.|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3553 458999999999999999999999999999999999765
No 158
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.29 E-value=4.8e-07 Score=104.09 Aligned_cols=131 Identities=20% Similarity=0.185 Sum_probs=70.5
Q ss_pred cceEEEeEEEeec------CCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCC-CCCCeEEECCEeCCCCCHH
Q 007122 457 GSIQFDNVHFSYL------TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-THSGSIRIDGQDICEVTLE 529 (617)
Q Consensus 457 ~~I~~~nvsF~Y~------~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~-p~~G~I~idG~~i~~~~~~ 529 (617)
+.|++++. ++| +++.+++|++|+ ++|+.++|+|||||||||++|+++|+.- .+.|. .+..
T Consensus 576 ~~i~i~~~--rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEG--RHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA---- 642 (800)
T ss_dssp SCEEEEEE--CCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS----
T ss_pred CCEEEEec--cccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch----
Confidence 35777764 344 245799999999 9999999999999999999999999743 23332 1111
Q ss_pred HHhcceEEEccCCCcc-cccHHHHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHH--HH
Q 007122 530 SLRKSIGVVPQDTVLF-NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV--AL 606 (617)
Q Consensus 530 ~lr~~i~~V~Qd~~LF-~gTIreNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRl--ai 606 (617)
-+..+++++| +| .-++.||+..+....+. +..+.. ..+....+.---.+.|=|..++.-.+..+ ++
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~~stf~~-e~~~~~------~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~l 711 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASGRSTFMV-EMTETA------NILHNATEYSLVLMDEIGRGTSTYDGLSLAWAC 711 (800)
T ss_dssp -SEEEECCCCE---EEEEEC-----------CHH-HHHHHH------HHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHH
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhhhhhhhH-HHHHHH------HHHHhccCCCEEEEECCCCCCChhHHHHHHHHH
Confidence 1246777776 45 34788998776433322 222211 12222222212234566666666544433 44
Q ss_pred HHHHh
Q 007122 607 ARAFL 611 (617)
Q Consensus 607 ARAll 611 (617)
.+.+.
T Consensus 712 l~~l~ 716 (800)
T 1wb9_A 712 AENLA 716 (800)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 45444
No 159
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.26 E-value=4.1e-08 Score=111.36 Aligned_cols=94 Identities=21% Similarity=0.145 Sum_probs=76.1
Q ss_pred eEEEeCCcEEEEECCCcchHHHHHHHHhcCCCC--CCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHh--
Q 007122 479 SFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT--HSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIR-- 554 (617)
Q Consensus 479 sl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p--~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~-- 554 (617)
++++++|.+++|+|++|+|||||++.|++...+ ..|+| .+|.++.+....+.++.+++.+|.+.++..+++.||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 467889999999999999999999999987655 78999 8999999999999999999999999999999988884
Q ss_pred cCCCCCCHHHHHHHHHHHcH
Q 007122 555 YGRLSATEEEVYDAARRAAI 574 (617)
Q Consensus 555 ~g~~~~~de~i~~a~~~a~l 574 (617)
.|..+. ..++..+++.+..
T Consensus 82 pG~~~f-~~~~~~~l~~ad~ 100 (665)
T 2dy1_A 82 PGYGDF-VGEIRGALEAADA 100 (665)
T ss_dssp CCSGGG-HHHHHHHHHHCSE
T ss_pred CCccch-HHHHHHHHhhcCc
Confidence 454332 2556666666543
No 160
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.25 E-value=4.6e-08 Score=96.14 Aligned_cols=64 Identities=22% Similarity=0.112 Sum_probs=49.8
Q ss_pred eEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCC------CHHH----HhcceEEEccCCCccc
Q 007122 479 SFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV------TLES----LRKSIGVVPQDTVLFN 546 (617)
Q Consensus 479 sl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~------~~~~----lr~~i~~V~Qd~~LF~ 546 (617)
+.+.++|+.++|+|++||||||++++|.++ .|+|.+++.|.... .... .++.+++++|++.++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 345689999999999999999999999997 79999999876422 1211 2456889999876654
No 161
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.25 E-value=1.8e-08 Score=110.00 Aligned_cols=90 Identities=16% Similarity=0.169 Sum_probs=68.3
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V 538 (617)
.+++++...|. +..+++++++++++| +.|+||+|+|||||+++|++... .|.|.++|.++.+.......+++..+
T Consensus 41 ~~l~~lv~~l~-~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~l 115 (499)
T 2dhr_A 41 EELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 115 (499)
T ss_dssp HHHHHHHHHHH-CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHH
T ss_pred HHHHHHHHHhh-chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHH
Confidence 34555544443 345789999999999 99999999999999999999874 78999999888766555566677788
Q ss_pred ccCCC-cc-cccHHHHH
Q 007122 539 PQDTV-LF-NDTIFHNI 553 (617)
Q Consensus 539 ~Qd~~-LF-~gTIreNI 553 (617)
+|+.. .. .-.+.|+|
T Consensus 116 fq~a~~~~p~il~IDEI 132 (499)
T 2dhr_A 116 FETAKRHAPCIVFIDEI 132 (499)
T ss_dssp TTTSSSSSSCEEEEECG
T ss_pred HHHHHhcCCCEEEEehH
Confidence 88764 23 23456777
No 162
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.22 E-value=6.7e-08 Score=106.69 Aligned_cols=71 Identities=27% Similarity=0.331 Sum_probs=54.5
Q ss_pred EEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCC-eEE-ECCEeCCC-------CCH---HHHhcceEEEccCCCcccc
Q 007122 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG-SIR-IDGQDICE-------VTL---ESLRKSIGVVPQDTVLFND 547 (617)
Q Consensus 480 l~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G-~I~-idG~~i~~-------~~~---~~lr~~i~~V~Qd~~LF~g 547 (617)
..+++|+.++|+|+||||||||+++|++.+.|++| +|. +||.++.+ ++. ..+++.+++|+|+.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l----- 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI----- 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----
Confidence 35789999999999999999999999999999987 784 99977643 232 23456788998872
Q ss_pred cHHHHHhc
Q 007122 548 TIFHNIRY 555 (617)
Q Consensus 548 TIreNI~~ 555 (617)
+..+|+.+
T Consensus 439 ~~~~~ivi 446 (552)
T 3cr8_A 439 TKNRGIAI 446 (552)
T ss_dssp HHTTCEEE
T ss_pred HhcCCEEE
Confidence 44556544
No 163
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.16 E-value=1.8e-07 Score=98.46 Aligned_cols=129 Identities=15% Similarity=0.176 Sum_probs=78.8
Q ss_pred cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHH
Q 007122 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFH 551 (617)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIre 551 (617)
.++++++++++++|+.++|+||+|||||||+++|+|. .+|++..-+ .+.+.++..+++++|...+| .|
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~-----~~~~~~~~~lg~~~q~~~~l----~d 223 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN-----LPLDRLNFELGVAIDQFLVV----FE 223 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS-----SCTTTHHHHHGGGTTCSCEE----ET
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe-----ccchhHHHHHHHhcchhHHH----HH
Confidence 3689999999999999999999999999999999995 468776511 11122344588999987653 34
Q ss_pred HHhcCCC---CCC-HHHHHHHHHHHcHHHHHHh---------CCCCcc-----ccccCCCCCCChHHHHHHHHHHHHhCC
Q 007122 552 NIRYGRL---SAT-EEEVYDAARRAAIHDTIMN---------FPAKYS-----TVVGERGLKLSGGEKQRVALARAFLKA 613 (617)
Q Consensus 552 NI~~g~~---~~~-de~i~~a~~~a~l~~~I~~---------lp~Gld-----T~vge~G~~LSGGQrQRlaiARAll~~ 613 (617)
++....+ ... .+.+. ....+.+.+.. .|+-++ -.+.++-..+++|.+||++.+.+++.+
T Consensus 224 d~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~ 300 (377)
T 1svm_A 224 DVKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPK 300 (377)
T ss_dssp TCCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCC
T ss_pred HHHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCC
Confidence 4443321 010 01110 12233333321 011111 023345566899999999887666555
Q ss_pred CC
Q 007122 614 PP 615 (617)
Q Consensus 614 p~ 615 (617)
|+
T Consensus 301 pD 302 (377)
T 1svm_A 301 DY 302 (377)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 164
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.05 E-value=2.3e-07 Score=94.73 Aligned_cols=62 Identities=16% Similarity=0.094 Sum_probs=53.5
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCC
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE 525 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~ 525 (617)
+.++++++.|++.. ++++|+ +|+.++++|++|+||||++..|++++.+..|+|.+.+.|.+.
T Consensus 77 ~~~~~l~~~~~~~~---~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 77 TVYEALKEALGGEA---RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (295)
T ss_dssp HHHHHHHHHTTSSC---CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred HHHHHHHHHHCCCC---ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence 56677778885332 678888 999999999999999999999999999999999999888765
No 165
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.01 E-value=2.4e-06 Score=77.94 Aligned_cols=48 Identities=23% Similarity=0.318 Sum_probs=40.6
Q ss_pred ccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCC--eEEECCEeCCCC
Q 007122 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG--SIRIDGQDICEV 526 (617)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G--~I~idG~~i~~~ 526 (617)
.+|+++ +|+.++|+||+|||||||++++++.+.+ +| .+++++.++.+.
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~ 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH
Confidence 356666 8999999999999999999999999987 68 888888766543
No 166
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.00 E-value=1.2e-06 Score=84.06 Aligned_cols=47 Identities=23% Similarity=0.169 Sum_probs=40.3
Q ss_pred EEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCC
Q 007122 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT 527 (617)
Q Consensus 481 ~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~ 527 (617)
..++|+.++|+|++||||||+++.|.+++++..|.|.+.+.|....+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 35789999999999999999999999999989999988766654443
No 167
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.00 E-value=1.2e-06 Score=81.61 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=39.7
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhc-ceEEEccC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK-SIGVVPQD 541 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~-~i~~V~Qd 541 (617)
++|+.++|+|++||||||+++.|++.+ |.+.+|+.++.. ...+++ .+++++|+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~ 59 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLND 59 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCc
Confidence 469999999999999999999999875 889999866543 122222 35555554
No 168
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.90 E-value=2.8e-06 Score=88.54 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=36.1
Q ss_pred cEEEEECCCcchHHHHHHHHhc-CCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCc
Q 007122 486 KSVAIVGTSGSGKSTILRLLFR-SFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVL 544 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~g-l~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~L 544 (617)
..+.|+||+|+||||+++.++| ++.|..|.|.++|.+...... .+..+++++|++++
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~ 94 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHL 94 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceE
Confidence 3499999999999999999999 899999999999988764333 26789999998875
No 169
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.85 E-value=1.1e-06 Score=90.47 Aligned_cols=44 Identities=23% Similarity=0.319 Sum_probs=36.5
Q ss_pred cccceeeeEEEeCCc------EEEEECCCcchHHHHHHHHhcCCCC--CCCe
Q 007122 472 RKILDGVSFVVPAGK------SVAIVGTSGSGKSTILRLLFRSFDT--HSGS 515 (617)
Q Consensus 472 ~~vL~~isl~I~~G~------~vaIVG~SGsGKSTL~~LL~gl~~p--~~G~ 515 (617)
.+.|++++..+.+++ .+||+|+|||||||+++.|.+++++ .+|.
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~ 124 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN 124 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe
Confidence 456777777777776 8999999999999999999999874 4554
No 170
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.81 E-value=4.9e-06 Score=87.29 Aligned_cols=47 Identities=26% Similarity=0.333 Sum_probs=36.7
Q ss_pred cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhc--CCCCCCCeEEECCE
Q 007122 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR--SFDTHSGSIRIDGQ 521 (617)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~g--l~~p~~G~I~idG~ 521 (617)
..+|++++++++ .|+|||++|||||||++.|.| +.++.+|.+.-...
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence 358999999998 999999999999999999999 77888887754443
No 171
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.80 E-value=1.8e-06 Score=80.93 Aligned_cols=41 Identities=32% Similarity=0.438 Sum_probs=33.7
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCCCCCCC--eEEECCEeCC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG--SIRIDGQDIC 524 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G--~I~idG~~i~ 524 (617)
++|+.++|+|++||||||++++|.+.+++ .| .|.+|+..++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHH
Confidence 47999999999999999999999998766 66 6777765443
No 172
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.79 E-value=4.7e-06 Score=79.39 Aligned_cols=58 Identities=21% Similarity=0.374 Sum_probs=41.0
Q ss_pred EEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhc----CC----CCCCCeEEECCEeC
Q 007122 465 HFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR----SF----DTHSGSIRIDGQDI 523 (617)
Q Consensus 465 sF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~g----l~----~p~~G~I~idG~~i 523 (617)
+|+|++..+++++++++.+++ +++++|++|+|||||++.+.+ .| .++.+.+.++|.++
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l 71 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEE
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEE
Confidence 567887778999999998887 689999999999999999986 22 34557777877554
No 173
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.76 E-value=8e-06 Score=85.09 Aligned_cols=61 Identities=25% Similarity=0.313 Sum_probs=46.9
Q ss_pred EEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeE-EECCEeCCCCCHHHHhcceEEEccCCCc
Q 007122 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI-RIDGQDICEVTLESLRKSIGVVPQDTVL 544 (617)
Q Consensus 481 ~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I-~idG~~i~~~~~~~lr~~i~~V~Qd~~L 544 (617)
-+++|+.+.|.||+|||||||+..+++...+..|.+ ++|+.+.. ...+.+++++.+|+..+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~---~~~ra~rlgv~~~~l~i 118 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL---DPVYAKNLGVDLKSLLI 118 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC---CHHHHHHHTCCGGGCEE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc---chHHHHHcCCchhhhhh
Confidence 489999999999999999999999999888888876 66654322 22355678887776443
No 174
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.76 E-value=1.1e-05 Score=76.22 Aligned_cols=37 Identities=38% Similarity=0.591 Sum_probs=32.9
Q ss_pred EEEEECCCcchHHHHHHHHhcCCCC-----------CCCeEEECCEeC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSFDT-----------HSGSIRIDGQDI 523 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~~p-----------~~G~I~idG~~i 523 (617)
+++|+|++|||||||++.++|...| .+|+|.++|.++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 7999999999999999999998765 578999999765
No 175
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.74 E-value=5e-06 Score=93.37 Aligned_cols=67 Identities=18% Similarity=0.222 Sum_probs=57.4
Q ss_pred CcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCC-CeEEECCEeCCCCCHHHHhcceEEEccCC
Q 007122 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS-GSIRIDGQDICEVTLESLRKSIGVVPQDT 542 (617)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~-G~I~idG~~i~~~~~~~lr~~i~~V~Qd~ 542 (617)
...+++++++.+++|+.+.|+||+|+|||||++.|+++.++.. |.+.+++.+.... ...++++||..
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~ 113 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQ 113 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecch
Confidence 4578999999999999999999999999999999999999887 8888888766543 44688888754
No 176
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.72 E-value=3.4e-06 Score=79.07 Aligned_cols=37 Identities=24% Similarity=0.469 Sum_probs=33.5
Q ss_pred eEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCe
Q 007122 479 SFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGS 515 (617)
Q Consensus 479 sl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~ 515 (617)
++++++|+.++|+||+|+|||||++.+++.+.|.+|.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~ 68 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI 68 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC
Confidence 4678899999999999999999999999999877773
No 177
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.69 E-value=4.7e-06 Score=95.96 Aligned_cols=112 Identities=17% Similarity=0.232 Sum_probs=71.7
Q ss_pred CCcchHHHHHHHHhcC---------CCCCCCeEEECCEeCCC---CCHHHHhcceEEEccCCCcccccHHHHHhcCCCCC
Q 007122 493 TSGSGKSTILRLLFRS---------FDTHSGSIRIDGQDICE---VTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSA 560 (617)
Q Consensus 493 ~SGsGKSTL~~LL~gl---------~~p~~G~I~idG~~i~~---~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~ 560 (617)
.|..||+++.+.+... |.|..|+|.++|.++.+ ++..++...+.-++|++..+. | +...+..
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~-~--~~~~~~~--- 343 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGH-A--ERVKNRP--- 343 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCS-T--TSSSSCS---
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcc-c--chhhcch---
Confidence 5778999998887652 46788999999999988 566666666666666554332 2 1222221
Q ss_pred CHHHHH-----HHHHHHcHHHHHHhCCCCcccc-ccCCCCCCChHHHHHHHHHHHHhCCCC
Q 007122 561 TEEEVY-----DAARRAAIHDTIMNFPAKYSTV-VGERGLKLSGGEKQRVALARAFLKAPP 615 (617)
Q Consensus 561 ~de~i~-----~a~~~a~l~~~I~~lp~GldT~-vge~G~~LSGGQrQRlaiARAll~~p~ 615 (617)
.+.++. +..++. +.+..+ |++.. .+..-..|||||||||+|||||..+|+
T Consensus 344 ~~~~i~~~i~~ei~~rl---~~L~~v--GL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~ 399 (842)
T 2vf7_A 344 EQAIALQRMAADLVKRL---DVLLHL--GLGYLGLDRSTPTLSPGELQRLRLATQLYSNLF 399 (842)
T ss_dssp SHHHHHHHHHHHHHHHH---HHHHHT--TCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCC
T ss_pred hhHHHHHHHHHHHHHHH---HHHHhC--CCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCC
Confidence 222222 122222 134443 44422 456667899999999999999999984
No 178
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.67 E-value=9e-06 Score=94.42 Aligned_cols=95 Identities=19% Similarity=0.259 Sum_probs=53.5
Q ss_pred HhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccccHHHHHhcCCCCC-CHHHHHHHHHHHcHHHHHHhCCC
Q 007122 505 LFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSA-TEEEVYDAARRAAIHDTIMNFPA 583 (617)
Q Consensus 505 L~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~gTIreNI~~g~~~~-~de~i~~a~~~a~l~~~I~~lp~ 583 (617)
.-+.+.|..|+|+++|.++.++....+...++++.+ +.+...+. .-.++.+..+. ..+++..+
T Consensus 388 ~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~------------~~l~~~~~~~~~~~~~~~~~--~~~~L~~v-- 451 (916)
T 3pih_A 388 GGRRLNREALSVKINGLNIHEFTELSISEELEFLKN------------LNLTEREREIVGELLKEIEK--RLEFLVDV-- 451 (916)
T ss_dssp CSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHS------------CCCCTTTTTTHHHHHHHHHH--HHHHHHTT--
T ss_pred ccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHh------------ccCcHHHHHHHHhhHHHHHH--HHHHHHHc--
Confidence 345688999999999998865433333333333221 11110000 01112121111 22345443
Q ss_pred Ccccc-ccCCCCCCChHHHHHHHHHHHHhCCCC
Q 007122 584 KYSTV-VGERGLKLSGGEKQRVALARAFLKAPP 615 (617)
Q Consensus 584 GldT~-vge~G~~LSGGQrQRlaiARAll~~p~ 615 (617)
|++.. .......||||||||++|||||..+|+
T Consensus 452 gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~ 484 (916)
T 3pih_A 452 GLEYLTLSRSATTLSGGESQRIRLATQIGSGLT 484 (916)
T ss_dssp TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCC
T ss_pred CCccccccCCcccCCHHHHHHHHHHHHHhhCCC
Confidence 44332 455567899999999999999999886
No 179
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.67 E-value=2e-05 Score=82.62 Aligned_cols=50 Identities=26% Similarity=0.394 Sum_probs=38.0
Q ss_pred EEEEECCCcchHHHHHHHHhcCCC-----------CCCCeEEECCEeCCCCCHHHHhcceEEEccCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSFD-----------THSGSIRIDGQDICEVTLESLRKSIGVVPQDT 542 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~~-----------p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~ 542 (617)
.++|||++|||||||++.|+|... |..|.|.++|.++. +....|++.|.|
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp 241 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIP 241 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCC
Confidence 499999999999999999999775 67799999997652 223466666544
No 180
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.66 E-value=3.7e-06 Score=82.44 Aligned_cols=71 Identities=23% Similarity=0.321 Sum_probs=50.8
Q ss_pred CCcEEEEECCCcchHHHHHHHHh---cCCCCCCCeE--------EECCEeCCCCC-HHHHhcceEEEc------cCCCcc
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLF---RSFDTHSGSI--------RIDGQDICEVT-LESLRKSIGVVP------QDTVLF 545 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~---gl~~p~~G~I--------~idG~~i~~~~-~~~lr~~i~~V~------Qd~~LF 545 (617)
+.-.++|+|++||||||+++.|+ |+...+.|.+ .-.|++..+.. ...+..++.++. |+.+|+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~ 87 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLA 87 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEEC
Confidence 34589999999999999999998 6555667776 34577766643 445666666666 566677
Q ss_pred cccHHHHHh
Q 007122 546 NDTIFHNIR 554 (617)
Q Consensus 546 ~gTIreNI~ 554 (617)
...+.+||.
T Consensus 88 g~~v~~~ir 96 (233)
T 3r20_A 88 GEDVSSEIR 96 (233)
T ss_dssp TEECTTGGG
T ss_pred Ceehhhhhc
Confidence 777766654
No 181
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.66 E-value=1.7e-05 Score=80.79 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=30.1
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCCCCCCC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG 514 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G 514 (617)
++|+.++++|++||||||++..|++.+.+.+|
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G 134 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH 134 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999999988888
No 182
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.64 E-value=1.9e-05 Score=83.27 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=37.6
Q ss_pred EEeCCcEEEEECCCcchHHHHHHHHhc------------CCCCCCCeEEECCE
Q 007122 481 VVPAGKSVAIVGTSGSGKSTILRLLFR------------SFDTHSGSIRIDGQ 521 (617)
Q Consensus 481 ~I~~G~~vaIVG~SGsGKSTL~~LL~g------------l~~p~~G~I~idG~ 521 (617)
++++|.+++|||++|+|||||++.|+| ..+|+.|.|.++|.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~ 68 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDE 68 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCc
Confidence 567899999999999999999999999 67899999999873
No 183
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.63 E-value=6.9e-06 Score=90.92 Aligned_cols=79 Identities=18% Similarity=0.280 Sum_probs=48.5
Q ss_pred EEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEcc
Q 007122 461 FDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQ 540 (617)
Q Consensus 461 ~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Q 540 (617)
++++...|. +..+++++++++ +|+.+.|+||+|+|||||++.|++...+..|+|.++|..-..--....++.+++++|
T Consensus 86 ~~~vk~~i~-~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~ 163 (543)
T 3m6a_A 86 LEKVKERIL-EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPG 163 (543)
T ss_dssp CHHHHHHHH-HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------
T ss_pred HHHHHHHHH-HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCch
Confidence 344444442 234678888888 899999999999999999999999999999999988854322222233455666665
Q ss_pred C
Q 007122 541 D 541 (617)
Q Consensus 541 d 541 (617)
.
T Consensus 164 ~ 164 (543)
T 3m6a_A 164 R 164 (543)
T ss_dssp C
T ss_pred H
Confidence 4
No 184
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.59 E-value=2.2e-05 Score=74.53 Aligned_cols=37 Identities=38% Similarity=0.650 Sum_probs=31.0
Q ss_pred EEEEECCCcchHHHHHHHHhcCC-----CCC------CCeEEECCEeC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSF-----DTH------SGSIRIDGQDI 523 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~-----~p~------~G~I~idG~~i 523 (617)
+++|+|++|||||||++.++|.. .|+ .|+|.++|.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 68999999999999999999974 243 57899999765
No 185
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.57 E-value=2.8e-05 Score=83.80 Aligned_cols=70 Identities=26% Similarity=0.386 Sum_probs=44.1
Q ss_pred cEEEEECCCcchHHHHHHHHhcCCC------------CCCCeEEECCEeCCCCCHHHHhcceEEEccCCCcccc-cHHHH
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRSFD------------THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHN 552 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl~~------------p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~~LF~g-TIreN 552 (617)
-+++|||++|+|||||++.|+|... |.+|.+.++|.++.-++..-.++...+.+|....|.. +..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 4799999999999999999999853 7889999999987666655556666666676655532 23445
Q ss_pred Hhc
Q 007122 553 IRY 555 (617)
Q Consensus 553 I~~ 555 (617)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
No 186
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.55 E-value=2.1e-05 Score=86.63 Aligned_cols=79 Identities=20% Similarity=0.345 Sum_probs=58.6
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcC----------------------C-C----
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS----------------------F-D---- 510 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl----------------------~-~---- 510 (617)
.|+++|+ ..++++++++.+| ..+|+|+||||||||+..|..+ + +
T Consensus 42 ~L~i~nf--------~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~~ 112 (517)
T 4ad8_A 42 RLEIRNL--------ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDES 112 (517)
T ss_dssp EEEEESB--------TTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC------
T ss_pred eeecccc--------cceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCCC
Confidence 4677763 2467889999999 9999999999999999999544 4 2
Q ss_pred -----------CCCCeEEECCEeCCCCCHHHHhc-ceEEEccCCCcc
Q 007122 511 -----------THSGSIRIDGQDICEVTLESLRK-SIGVVPQDTVLF 545 (617)
Q Consensus 511 -----------p~~G~I~idG~~i~~~~~~~lr~-~i~~V~Qd~~LF 545 (617)
...+.+++||.++..-++.++-. .+.+++|+-.++
T Consensus 113 ~~~~i~r~~~~~g~~~~~ing~~v~~~~l~~~~~~li~i~~q~~~~~ 159 (517)
T 4ad8_A 113 EADSASRRLSSAGRGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVS 159 (517)
T ss_dssp --CEEEEEEETTSCCEEESSSSBCCHHHHHHHHTTTEEEESGGGGGT
T ss_pred CeEEEEEEEecCCCcEEEECCEECCHHHHHHHhhhheEEeCCchHHh
Confidence 33678999998876544555544 468889975443
No 187
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.55 E-value=3.1e-05 Score=83.11 Aligned_cols=49 Identities=22% Similarity=0.329 Sum_probs=39.0
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCC
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS 513 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~ 513 (617)
.|+++|+ .+|.+. . .+++.+|+.++|+||||||||||+++|.++..|.+
T Consensus 6 ~l~~~~~-~~~~~~----~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 6 GLELSNF-KSYRGV----T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp EEEEESC-SSCCSE----E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred EEEEeCE-EEECCc----e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 6888888 577421 1 25577899999999999999999999999888765
No 188
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.52 E-value=2.9e-05 Score=71.87 Aligned_cols=33 Identities=33% Similarity=0.458 Sum_probs=28.2
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG 520 (617)
.|+.++|+|++||||||++++|++.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 5789999999999999999999997753 56664
No 189
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.51 E-value=2.5e-05 Score=76.50 Aligned_cols=44 Identities=16% Similarity=0.317 Sum_probs=32.2
Q ss_pred ceeeeEEEe---CCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEEC
Q 007122 475 LDGVSFVVP---AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519 (617)
Q Consensus 475 L~~isl~I~---~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~id 519 (617)
|.+.|++++ +|..++|.|++||||||+++.|...+.+ .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 344444444 8999999999999999999999999887 6777543
No 190
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.51 E-value=9.1e-06 Score=78.34 Aligned_cols=43 Identities=28% Similarity=0.374 Sum_probs=37.9
Q ss_pred EEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCC--eEEECCEe
Q 007122 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG--SIRIDGQD 522 (617)
Q Consensus 480 l~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G--~I~idG~~ 522 (617)
+.+++|..++|+|++||||||+++.|.+.+.|..| .+.+||.+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 45788999999999999999999999999988888 88888643
No 191
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.50 E-value=1.2e-05 Score=76.92 Aligned_cols=53 Identities=23% Similarity=0.389 Sum_probs=36.3
Q ss_pred EEeCCcEEEEECCCcchHHHHHHHHhcCCCC-CCCeE----------EECCEeCCCCCHHHHhc
Q 007122 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSI----------RIDGQDICEVTLESLRK 533 (617)
Q Consensus 481 ~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p-~~G~I----------~idG~~i~~~~~~~lr~ 533 (617)
...+|..++|+|+|||||||+++.|...++. ....+ .+||.+..-++.+.+..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~ 71 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFER 71 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHH
Confidence 4568999999999999999999999876632 11111 13555555566666553
No 192
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.45 E-value=1.4e-05 Score=83.16 Aligned_cols=53 Identities=21% Similarity=0.232 Sum_probs=46.2
Q ss_pred cccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCC
Q 007122 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524 (617)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~ 524 (617)
..+++++++++++|..++|+|++|+||||+++.|++.+.+..|+|.+-+.|..
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 35788999999999999999999999999999999998888888877665553
No 193
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.40 E-value=2e-05 Score=84.07 Aligned_cols=63 Identities=16% Similarity=0.083 Sum_probs=51.0
Q ss_pred eEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCC
Q 007122 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526 (617)
Q Consensus 459 I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~ 526 (617)
+..++++..|++.. ++++++ +|+.++++|++||||||++..|++.+.+..|+|.+.+.|....
T Consensus 77 ~v~~~L~~~~~~~~---~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~ 139 (425)
T 2ffh_A 77 TVYEALKEALGGEA---RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP 139 (425)
T ss_dssp HHHHHHHHHTTSSC---CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCH
T ss_pred HHHHHHHHHhCCCc---ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCc
Confidence 44455666665332 567777 8999999999999999999999999999999999988777653
No 194
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.37 E-value=1.7e-05 Score=75.40 Aligned_cols=32 Identities=38% Similarity=0.391 Sum_probs=27.2
Q ss_pred CcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCE
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ 521 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~ 521 (617)
...|+|+|++||||||+.++|... |-..+|.-
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEccc
Confidence 457999999999999999999985 77777653
No 195
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.35 E-value=8.4e-06 Score=77.57 Aligned_cols=69 Identities=19% Similarity=0.298 Sum_probs=38.6
Q ss_pred EEEEECCCcchHHHHHHHHhc------CCCCCCCeEEECCE--eCCCCCH--------HHHhcceEEEccCCCcccccHH
Q 007122 487 SVAIVGTSGSGKSTILRLLFR------SFDTHSGSIRIDGQ--DICEVTL--------ESLRKSIGVVPQDTVLFNDTIF 550 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~g------l~~p~~G~I~idG~--~i~~~~~--------~~lr~~i~~V~Qd~~LF~gTIr 550 (617)
.|+|+|++||||||+++.|+. +.+|..|...++.. +-...+. +.++.....+.|+..+++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 689999999999999999998 33444443322211 0000000 0022233566777789999888
Q ss_pred HHHhc
Q 007122 551 HNIRY 555 (617)
Q Consensus 551 eNI~~ 555 (617)
+|+.+
T Consensus 82 ~~~~~ 86 (205)
T 2jaq_A 82 EDPIF 86 (205)
T ss_dssp THHHH
T ss_pred hhHHH
Confidence 87765
No 196
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=97.35 E-value=5.6e-05 Score=68.61 Aligned_cols=34 Identities=29% Similarity=0.253 Sum_probs=27.6
Q ss_pred Cccccc-----cCCCCCCChHHHHHHHHH------HHHhCCCCCC
Q 007122 584 KYSTVV-----GERGLKLSGGEKQRVALA------RAFLKAPPIL 617 (617)
Q Consensus 584 GldT~v-----ge~G~~LSGGQrQRlaiA------RAll~~p~IL 617 (617)
+|++.+ .....+||||||||++|| ||++.+|++|
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~ll 85 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLL 85 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEE
Confidence 677765 234578999999999876 9999999875
No 197
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.33 E-value=9.9e-05 Score=69.52 Aligned_cols=50 Identities=20% Similarity=0.403 Sum_probs=29.2
Q ss_pred ccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhc----CCCCC----CCeEEECCEeC
Q 007122 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR----SFDTH----SGSIRIDGQDI 523 (617)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~g----l~~p~----~G~I~idG~~i 523 (617)
.++++++++.++. +++++|++|+|||||++.+.+ .+.|+ .+.+.++|..+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~ 69 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKF 69 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEE
Confidence 4788999988776 899999999999999999987 33333 45666777544
No 198
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.32 E-value=4.8e-05 Score=79.34 Aligned_cols=42 Identities=21% Similarity=0.360 Sum_probs=36.6
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~ 524 (617)
+++..++|+|++|||||||++.|+|.+.+.+|+|.+.+.|..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 457899999999999999999999999889999988776654
No 199
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.31 E-value=0.00012 Score=67.85 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=23.6
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
++|.+++|||++|+|||||++.|++..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999999864
No 200
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.25 E-value=2.1e-05 Score=77.09 Aligned_cols=65 Identities=15% Similarity=0.210 Sum_probs=42.6
Q ss_pred ccceee-eEEEeCCcEEEEECCCcchHHHHHH-HHhcCCCCCCCeEEECCEeCCCCCHHHH---hcceEEEccC
Q 007122 473 KILDGV-SFVVPAGKSVAIVGTSGSGKSTILR-LLFRSFDTHSGSIRIDGQDICEVTLESL---RKSIGVVPQD 541 (617)
Q Consensus 473 ~vL~~i-sl~I~~G~~vaIVG~SGsGKSTL~~-LL~gl~~p~~G~I~idG~~i~~~~~~~l---r~~i~~V~Qd 541 (617)
+.|+++ .--+++|+.++|+|++|||||||+. ++....+...+.+++++. .+.+.+ ..++++.+|+
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e----~~~~~~~~~~~~~g~~~~~ 79 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE----EHPVQVRQNMAQFGWDVKP 79 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS----SCHHHHHHHHHTTTCCCHH
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc----CCHHHHHHHHHHcCCCHHH
Confidence 445554 5579999999999999999999964 555555544555566643 233333 2346666654
No 201
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.21 E-value=0.00014 Score=68.32 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=26.5
Q ss_pred eeeEEEeCCcEEEEECCCcchHHHHHHHHhcC
Q 007122 477 GVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 477 ~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999865
No 202
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.14 E-value=1.6e-05 Score=82.54 Aligned_cols=70 Identities=19% Similarity=0.265 Sum_probs=52.7
Q ss_pred CcccceeeeEEEeCCcE--EEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCC-CCHHHHhcceEEEcc
Q 007122 471 ERKILDGVSFVVPAGKS--VAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE-VTLESLRKSIGVVPQ 540 (617)
Q Consensus 471 ~~~vL~~isl~I~~G~~--vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~-~~~~~lr~~i~~V~Q 540 (617)
.+.+++.++..|+.|+. +.+.||+|+||||+++.+++...+..+.+.+.+.+..+ ...+.+|..+..++|
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~ 102 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFAS 102 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHh
Confidence 34688899999999988 99999999999999999999887777766555555443 345556655544443
No 203
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.11 E-value=0.00019 Score=71.06 Aligned_cols=46 Identities=24% Similarity=0.434 Sum_probs=30.6
Q ss_pred cceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeC
Q 007122 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI 523 (617)
Q Consensus 474 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i 523 (617)
.++++++.+++| +.|+||+|+||||+++.+++.+... -+.+++.++
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~ 81 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHH
Confidence 344555555555 9999999999999999999876432 366666544
No 204
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.07 E-value=0.00023 Score=77.39 Aligned_cols=55 Identities=18% Similarity=0.183 Sum_probs=46.4
Q ss_pred eeeEEEeCCcEEEEECCCcchHHHHHHHHhc--CCCCCCCeEEECCEeCCCCCHHHH
Q 007122 477 GVSFVVPAGKSVAIVGTSGSGKSTILRLLFR--SFDTHSGSIRIDGQDICEVTLESL 531 (617)
Q Consensus 477 ~isl~I~~G~~vaIVG~SGsGKSTL~~LL~g--l~~p~~G~I~idG~~i~~~~~~~l 531 (617)
.+++++.++.++.|+|.|||||||+++.|.. ++.++.|++.+.++|.+......+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~ 215 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVY 215 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGG
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhh
Confidence 4678889999999999999999999998876 677888999998888876544444
No 205
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.06 E-value=0.00025 Score=76.62 Aligned_cols=122 Identities=13% Similarity=0.123 Sum_probs=71.5
Q ss_pred ccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCC-eEEECCEeCCCCCHHHHhcce-EEEccCCCcccccHH
Q 007122 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG-SIRIDGQDICEVTLESLRKSI-GVVPQDTVLFNDTIF 550 (617)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G-~I~idG~~i~~~~~~~lr~~i-~~V~Qd~~LF~gTIr 550 (617)
+.|+++..-+++|+.+.|.|++|+|||||+.-+++...+..| .|.+-+. +.+...+..++ +....- . .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~~------~-~ 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGNI------N-A 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHTC------C-H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcCC------C-H
Confidence 467777777999999999999999999999999887766555 5655442 34555555442 111100 0 1
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhC--CCCC
Q 007122 551 HNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK--APPI 616 (617)
Q Consensus 551 eNI~~g~~~~~de~i~~a~~~a~l~~~I~~lp~GldT~vge~G~~LSGGQrQRlaiARAll~--~p~I 616 (617)
+.+.-| ..++++..+..+.+ +.+...|- .+- .-..+|++|.+ +.||++.+ +|++
T Consensus 261 ~~l~~g--~l~~~~~~~~~~a~---~~l~~~~l----~i~-d~~~~s~~~i~--~~~~~l~~~~~~~l 316 (454)
T 2r6a_A 261 QNLRTG--KLTPEDWGKLTMAM---GSLSNAGI----YID-DTPSIRVSDIR--AKCRRLKQESGLGM 316 (454)
T ss_dssp HHHHTS--CCCHHHHHHHHHHH---HHHHSSCE----EEE-CCTTCCHHHHH--HHHHHHHTTTCCCE
T ss_pred HHHhcC--CCCHHHHHHHHHHH---HHHhcCCE----EEE-CCCCCCHHHHH--HHHHHHHHHcCCCE
Confidence 123223 34566554333322 22333221 122 23478999876 67788773 4554
No 206
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.04 E-value=7.4e-05 Score=76.01 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=43.3
Q ss_pred ee-eeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCC
Q 007122 476 DG-VSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526 (617)
Q Consensus 476 ~~-isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~ 526 (617)
++ ++++.+ |+.++++|++|+||||++..|++.+.+..|+|.+.+.|...-
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 35 677776 999999999999999999999999999999999887776543
No 207
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.04 E-value=0.00026 Score=81.90 Aligned_cols=39 Identities=33% Similarity=0.542 Sum_probs=33.7
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTIL 502 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~ 502 (617)
.|++++.. ..=|+|||++||+++.|+|+|.||||||||+
T Consensus 23 ~I~i~gar------~hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 23 KIIVKGAR------AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp EEEEEEEC------SSSCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred eEEEeccc------cccCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence 57777642 3459999999999999999999999999997
No 208
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.04 E-value=0.00026 Score=82.18 Aligned_cols=39 Identities=26% Similarity=0.424 Sum_probs=33.6
Q ss_pred ceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHH
Q 007122 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTIL 502 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~ 502 (617)
.|++++. ...=|||||++||+++.|+|+|.||||||||+
T Consensus 25 ~I~i~ga------r~hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 25 RLIVKGA------REHNLRSVDLDLPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp EEEEEEE------CSSSCCSEEEEEESSSEEEEEESTTSSHHHHH
T ss_pred cEEEecc------cccccCceeeeccCCCEEEEECCCCCcHHHHH
Confidence 5777764 23459999999999999999999999999997
No 209
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.02 E-value=0.00019 Score=67.33 Aligned_cols=40 Identities=30% Similarity=0.427 Sum_probs=33.8
Q ss_pred EEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeE-EECC
Q 007122 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI-RIDG 520 (617)
Q Consensus 481 ~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I-~idG 520 (617)
..++|..+.|+|++||||||+++.|++.+.+..|.+ .+|+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 346799999999999999999999999888777776 4554
No 210
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.01 E-value=0.00036 Score=63.25 Aligned_cols=28 Identities=32% Similarity=0.538 Sum_probs=22.8
Q ss_pred eeEEEeCCcEEEEECCCcchHHHHHHHHh
Q 007122 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (617)
Q Consensus 478 isl~I~~G~~vaIVG~SGsGKSTL~~LL~ 506 (617)
..+++.+| ..+|+||+||||||++..|.
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34455554 89999999999999999876
No 211
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.99 E-value=0.0001 Score=77.25 Aligned_cols=53 Identities=30% Similarity=0.446 Sum_probs=36.5
Q ss_pred cceEEEeEEEeecCCcccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeE
Q 007122 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI 516 (617)
Q Consensus 457 ~~I~~~nvsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I 516 (617)
+.|.++|++..|. .+.++++++|+| +|||++|+|||||++.|++...+..|.+
T Consensus 16 ~~v~~~~l~~~~~-~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~ 68 (361)
T 2qag_A 16 GYVGFANLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVI 68 (361)
T ss_dssp -----CCHHHHHH-THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------
T ss_pred ceEEeccchHHhC-CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcc
Confidence 5689999988875 456889999877 9999999999999999998765554443
No 212
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.98 E-value=0.00036 Score=66.54 Aligned_cols=29 Identities=38% Similarity=0.516 Sum_probs=24.9
Q ss_pred EEEEECCCcchHHHHHHHHhcCCCCCCCeEEECC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG 520 (617)
.++|+|++||||||+.+.|+++ |...+|+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccch
Confidence 6899999999999999999983 6666654
No 213
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.96 E-value=0.00019 Score=71.19 Aligned_cols=41 Identities=29% Similarity=0.484 Sum_probs=33.7
Q ss_pred EEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeC
Q 007122 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI 523 (617)
Q Consensus 481 ~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i 523 (617)
..+++..+.|+|++||||||+++.|.+.+. .|.+.+|+-.+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 456788999999999999999999998764 35677887544
No 214
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=96.93 E-value=0.0003 Score=65.49 Aligned_cols=25 Identities=44% Similarity=0.518 Sum_probs=20.6
Q ss_pred CCCCChHHHHHHHHHHHHh----CCCCCC
Q 007122 593 GLKLSGGEKQRVALARAFL----KAPPIL 617 (617)
Q Consensus 593 G~~LSGGQrQRlaiARAll----~~p~IL 617 (617)
...||||||||++||||+. ++|+++
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~l 90 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFY 90 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEE
Confidence 3679999999999999995 556653
No 215
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.92 E-value=0.00019 Score=68.32 Aligned_cols=34 Identities=32% Similarity=0.495 Sum_probs=27.7
Q ss_pred CcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEe
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD 522 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~ 522 (617)
...|+|+|++||||||+++.|.+.+ |...+|+-+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~ 51 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDA 51 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCc
Confidence 5689999999999999999998865 555665533
No 216
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.91 E-value=0.00027 Score=66.64 Aligned_cols=45 Identities=33% Similarity=0.697 Sum_probs=35.1
Q ss_pred EEEECCCcchHHHHHHHHhcCC-------------CCCCCeEEECCEeCCCCCHHHHhcc
Q 007122 488 VAIVGTSGSGKSTILRLLFRSF-------------DTHSGSIRIDGQDICEVTLESLRKS 534 (617)
Q Consensus 488 vaIVG~SGsGKSTL~~LL~gl~-------------~p~~G~I~idG~~i~~~~~~~lr~~ 534 (617)
|.|+||||||||||++.|+.-+ +|-.|+ .||+|..-++.++..+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE--~~G~dY~Fvs~~eF~~~ 61 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSM 61 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC--cCCceeEeecHHHHHHH
Confidence 7899999999999999886432 456776 48888888887776543
No 217
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.86 E-value=0.00078 Score=61.58 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.7
Q ss_pred cEEEEECCCcchHHHHHHHHhcCC
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
-+++|+|++|+|||||++.+.|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999853
No 218
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.85 E-value=0.00042 Score=72.92 Aligned_cols=41 Identities=24% Similarity=0.402 Sum_probs=34.4
Q ss_pred EEeCCcEEEEECCCcchHHHHHHHHhcC-----------CCCCCCeEEECCE
Q 007122 481 VVPAGKSVAIVGTSGSGKSTILRLLFRS-----------FDTHSGSIRIDGQ 521 (617)
Q Consensus 481 ~I~~G~~vaIVG~SGsGKSTL~~LL~gl-----------~~p~~G~I~idG~ 521 (617)
.++.|.+++|||++|+|||||++.|.|. .+|..|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4678899999999999999999999998 6788888887663
No 219
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.83 E-value=9.3e-05 Score=85.66 Aligned_cols=61 Identities=16% Similarity=0.255 Sum_probs=47.9
Q ss_pred EEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCC
Q 007122 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDT 542 (617)
Q Consensus 480 l~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~~~~~~lr~~i~~V~Qd~ 542 (617)
+.+++|+.+.|+||+|||||||+++|++.+.+. -+.+++.++......+..+++..+.|++
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~--~i~v~~~~l~~~~~g~~~~~l~~vf~~a 293 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESESNLRKAFEEA 293 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE--EEEEEHHHHSSSSTTHHHHHHHHHHHHH
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc--EEEEEchHhhhhhhhhHHHHHHHHHHHH
Confidence 468999999999999999999999999987644 4778887776555555555666666654
No 220
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.78 E-value=0.00057 Score=63.61 Aligned_cols=37 Identities=27% Similarity=0.534 Sum_probs=28.3
Q ss_pred cEEEEECCCcchHHHHHHHHhcC-----------CCCCCCeEEECCEe
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRS-----------FDTHSGSIRIDGQD 522 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl-----------~~p~~G~I~idG~~ 522 (617)
-+++++|++|+|||||++.|++- .++..|.+.++|..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 55 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK 55 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcE
Confidence 37999999999999999999984 23345566666543
No 221
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.74 E-value=0.00069 Score=63.13 Aligned_cols=23 Identities=43% Similarity=0.768 Sum_probs=21.0
Q ss_pred EEEEECCCcchHHHHHHHHhcCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+++|||++|+|||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999964
No 222
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.74 E-value=0.00041 Score=64.70 Aligned_cols=38 Identities=29% Similarity=0.402 Sum_probs=30.0
Q ss_pred CcEEEEECCCcchHHHHHHHHhcCCCCC---CCeEEECCEe
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQD 522 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~gl~~p~---~G~I~idG~~ 522 (617)
-..++|+|+||||||||++.|++.+.+. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 4689999999999999999999876543 3677777654
No 223
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.70 E-value=0.00074 Score=64.12 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=20.4
Q ss_pred EEEEECCCcchHHHHHHHHhc
Q 007122 487 SVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~g 507 (617)
+++|+|++||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 224
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.67 E-value=1.1 Score=49.56 Aligned_cols=14 Identities=7% Similarity=0.197 Sum_probs=10.0
Q ss_pred eEEEeEEEeecCCc
Q 007122 459 IQFDNVHFSYLTER 472 (617)
Q Consensus 459 I~~~nvsF~Y~~~~ 472 (617)
-.++|++|.-++++
T Consensus 369 ~~l~~isl~i~~G~ 382 (598)
T 3qf4_B 369 PVLKDITFHIKPGQ 382 (598)
T ss_dssp CSCCSEEEECCTTC
T ss_pred ccccceEEEEcCCC
Confidence 35789999876543
No 225
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.66 E-value=0.0006 Score=72.06 Aligned_cols=55 Identities=15% Similarity=0.165 Sum_probs=40.8
Q ss_pred EEEeec-CCcccceeeeEEE---eCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEEC
Q 007122 464 VHFSYL-TERKILDGVSFVV---PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519 (617)
Q Consensus 464 vsF~Y~-~~~~vL~~isl~I---~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~id 519 (617)
+.+.+. .+.|++-|+ +.. ..+..++|+|+|||||||+++.|+..+.+..+.|.+-
T Consensus 11 ~~~G~~~~g~~v~~d~-~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 11 IVLGKDRDGGLVLVDI-WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp EEEEECTTSCEEEECT-TCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cEEEEeCCCCeEEEec-ccCcCccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 444453 245666665 222 2678899999999999999999998777888888774
No 226
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.64 E-value=0.00097 Score=61.71 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=23.2
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
.|..+.|+|+|||||||+.+.|+..+
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 36789999999999999999999754
No 227
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.58 E-value=0.00088 Score=62.46 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=22.5
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhc
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~g 507 (617)
.+|..++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999984
No 228
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.56 E-value=0.0019 Score=60.19 Aligned_cols=36 Identities=39% Similarity=0.564 Sum_probs=28.6
Q ss_pred EEEEECCCcchHHHHHHH-HhcC----CCCCCC----eEEECCEe
Q 007122 487 SVAIVGTSGSGKSTILRL-LFRS----FDTHSG----SIRIDGQD 522 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~L-L~gl----~~p~~G----~I~idG~~ 522 (617)
+++|+|++|+|||||++- +.+. +.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 799999999999999964 4454 677877 67778754
No 229
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.50 E-value=0.00035 Score=72.20 Aligned_cols=37 Identities=32% Similarity=0.421 Sum_probs=33.5
Q ss_pred ccceeeeEEEeCCcE--EEEECCCcchHHHHHHHHhcCC
Q 007122 473 KILDGVSFVVPAGKS--VAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 473 ~vL~~isl~I~~G~~--vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
.+++++++.+++|+. ++|+|++||||||++++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 578889999999999 9999999999999999998754
No 230
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.46 E-value=0.00048 Score=71.11 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=29.2
Q ss_pred cceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 474 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.-.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 355544468999999999999999999998776543
No 231
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.42 E-value=0.0015 Score=59.92 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=21.1
Q ss_pred cEEEEECCCcchHHHHHHHHhcCC
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
..++|+|++||||||+++.|...+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998654
No 232
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.40 E-value=0.0016 Score=60.70 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=22.4
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 47789999999999999999997644
No 233
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.38 E-value=1.2 Score=49.25 Aligned_cols=14 Identities=7% Similarity=0.119 Sum_probs=10.8
Q ss_pred eEEEeEEEeecCCc
Q 007122 459 IQFDNVHFSYLTER 472 (617)
Q Consensus 459 I~~~nvsF~Y~~~~ 472 (617)
-.++|++|.-++++
T Consensus 355 ~~l~~isl~i~~G~ 368 (578)
T 4a82_A 355 PILKDINLSIEKGE 368 (578)
T ss_dssp CSEEEEEEEECTTC
T ss_pred cceeeeEEEECCCC
Confidence 46899999887554
No 234
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.38 E-value=0.00043 Score=66.14 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=23.2
Q ss_pred EEEEECCCcchHHHHHHHHhcCCCCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSFDTH 512 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~~p~ 512 (617)
.|+|+|++||||||+++.|.+.+++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999887643
No 235
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.37 E-value=0.0017 Score=60.63 Aligned_cols=26 Identities=27% Similarity=0.472 Sum_probs=22.5
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+|..+.|+|++||||||+++.|...+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998643
No 236
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.35 E-value=0.002 Score=61.56 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=22.4
Q ss_pred eeEEEeCCcEEEEECCCcchHHHHHHHHh
Q 007122 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (617)
Q Consensus 478 isl~I~~G~~vaIVG~SGsGKSTL~~LL~ 506 (617)
.++++.+ ...+|+||+||||||++..|.
T Consensus 17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 3445555 489999999999999999774
No 237
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.31 E-value=0.002 Score=60.93 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=24.7
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
.+|..|+|+|++||||||+++.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999876
No 238
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.31 E-value=0.0012 Score=68.67 Aligned_cols=60 Identities=23% Similarity=0.364 Sum_probs=39.7
Q ss_pred EEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeE-EECCEeCCCCCHHHHhcceEEEccCCC
Q 007122 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI-RIDGQDICEVTLESLRKSIGVVPQDTV 543 (617)
Q Consensus 481 ~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I-~idG~~i~~~~~~~lr~~i~~V~Qd~~ 543 (617)
-+++|+.+.|.|++|||||||+..++.......|.+ +++... ..+. .+.+++++.+|+..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~l~ 117 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDSLL 117 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGGCE
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHHeE
Confidence 588999999999999999999877775554445554 455432 2222 23445666555543
No 239
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.29 E-value=0.0023 Score=61.47 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=22.0
Q ss_pred CCcEEEEECCCcchHHHHHHHHhc
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~g 507 (617)
++..|+|+|++||||||+++.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 240
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.28 E-value=0.0018 Score=60.19 Aligned_cols=38 Identities=24% Similarity=0.462 Sum_probs=30.1
Q ss_pred CcEEEEECCCcchHHHHHHHHhcC----CCCCCC----eEEECCEe
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFRS----FDTHSG----SIRIDGQD 522 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~gl----~~p~~G----~I~idG~~ 522 (617)
.-+++++|++|+|||||++.+.+- +.|+.| .+.+++..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~ 61 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFK 61 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEE
Confidence 457999999999999999999976 467777 55555543
No 241
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.26 E-value=0.0017 Score=60.71 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=23.8
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+++..|.|+|++||||||+++.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 468899999999999999999998643
No 242
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.25 E-value=0.002 Score=62.92 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=23.3
Q ss_pred EeCCcEEEEECCCcchHHHHHHHHhc
Q 007122 482 VPAGKSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 482 I~~G~~vaIVG~SGsGKSTL~~LL~g 507 (617)
=++|.+++|+|++||||||+++.|++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999999986
No 243
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.23 E-value=0.0014 Score=66.60 Aligned_cols=25 Identities=40% Similarity=0.477 Sum_probs=22.5
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
++.+++|||++|+|||||++.|+|.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3448999999999999999999985
No 244
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.21 E-value=0.0022 Score=64.75 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=28.9
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG 520 (617)
++|..+.|+|+|||||||+++.|+.-++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 3467899999999999999999987543 36677765
No 245
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.20 E-value=0.0028 Score=61.84 Aligned_cols=28 Identities=32% Similarity=0.488 Sum_probs=24.0
Q ss_pred EEEEECCCcchHHHHHHHHhcCCCCCCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSFDTHSG 514 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~~p~~G 514 (617)
+|+|||++|+|||||++.|+|...+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999997665554
No 246
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.17 E-value=0.0034 Score=65.29 Aligned_cols=36 Identities=28% Similarity=0.529 Sum_probs=31.2
Q ss_pred CcEEEEECCCcchHHHHHHHHhc-----------CCCCCCCeEEECC
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFR-----------SFDTHSGSIRIDG 520 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~g-----------l~~p~~G~I~idG 520 (617)
|-+++|||.+|+|||||++.|.+ -.+|+.|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 3468888887765
No 247
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.16 E-value=0.0014 Score=67.39 Aligned_cols=79 Identities=19% Similarity=0.264 Sum_probs=48.2
Q ss_pred EEeCCcEEEEECCCcchHHHHHHHHhcC-CCC------CCCeEEECCEeCCCCCHHHHh---cceEEEccCCCcccccHH
Q 007122 481 VVPAGKSVAIVGTSGSGKSTILRLLFRS-FDT------HSGSIRIDGQDICEVTLESLR---KSIGVVPQDTVLFNDTIF 550 (617)
Q Consensus 481 ~I~~G~~vaIVG~SGsGKSTL~~LL~gl-~~p------~~G~I~idG~~i~~~~~~~lr---~~i~~V~Qd~~LF~gTIr 550 (617)
-+++|+.+.|.|++|||||||+.-++.- ..| ..+.++++.... ++.+.++ +++++-++ .+.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~--~~~~~l~~~~~~~g~~~~-------~~~ 173 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT--FRWERIENMAKALGLDID-------NVM 173 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CCHHHHHHHHHHTTCCHH-------HHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC--CCHHHHHHHHHHhCCCHH-------HHh
Confidence 5899999999999999999999877754 334 344566765431 3344332 23343222 355
Q ss_pred HHHhcCCCCCCHHHHHHHH
Q 007122 551 HNIRYGRLSATEEEVYDAA 569 (617)
Q Consensus 551 eNI~~g~~~~~de~i~~a~ 569 (617)
+||.+.++ .+.++..+.+
T Consensus 174 ~~l~~~~~-~~~~~~~~~l 191 (324)
T 2z43_A 174 NNIYYIRA-INTDHQIAIV 191 (324)
T ss_dssp HTEEEEEC-CSHHHHHHHH
T ss_pred ccEEEEeC-CCHHHHHHHH
Confidence 78776654 3444443333
No 248
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.14 E-value=0.0016 Score=60.52 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.6
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhc
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~g 507 (617)
.++..+.|+|++||||||+++.|..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4678899999999999999999984
No 249
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.13 E-value=0.0025 Score=58.26 Aligned_cols=20 Identities=50% Similarity=0.762 Sum_probs=18.6
Q ss_pred cEEEEECCCcchHHHHHHHH
Q 007122 486 KSVAIVGTSGSGKSTILRLL 505 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL 505 (617)
..++|+|++||||||+++.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 250
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.10 E-value=2.3 Score=46.97 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=11.5
Q ss_pred ceEEEeEEEeecCCc
Q 007122 458 SIQFDNVHFSYLTER 472 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~ 472 (617)
.-.++|++|+-++++
T Consensus 356 ~~~l~~isl~i~~Ge 370 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGS 370 (587)
T ss_dssp CCSEEEEEEEECTTC
T ss_pred CcceeceEEEEcCCC
Confidence 456899999987654
No 251
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.08 E-value=0.0025 Score=59.73 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=23.9
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+++..|+|+|++||||||+++.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998644
No 252
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.08 E-value=0.0027 Score=60.44 Aligned_cols=26 Identities=38% Similarity=0.451 Sum_probs=23.6
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
++|..|+|+|++||||||+++.|...
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 56889999999999999999999864
No 253
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.05 E-value=0.003 Score=59.88 Aligned_cols=28 Identities=36% Similarity=0.430 Sum_probs=24.6
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcCCCC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRSFDT 511 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl~~p 511 (617)
+|..|+|.|++||||||+++.|...+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5789999999999999999999876553
No 254
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.02 E-value=0.0029 Score=60.24 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=23.6
Q ss_pred EeCCcEEEEECCCcchHHHHHHHHhcC
Q 007122 482 VPAGKSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 482 I~~G~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
.++|..|+|+|++||||||+++.|...
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999999853
No 255
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.94 E-value=0.0022 Score=65.18 Aligned_cols=34 Identities=41% Similarity=0.461 Sum_probs=29.9
Q ss_pred ccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhc
Q 007122 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~g 507 (617)
..+++..+++ .|.-++|+|+||+||||++..|.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4677877777 799999999999999999998886
No 256
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.93 E-value=0.003 Score=58.32 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=20.8
Q ss_pred EEEEECCCcchHHHHHHHHhcCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
.+.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 69999999999999999998654
No 257
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.91 E-value=0.0028 Score=58.73 Aligned_cols=27 Identities=22% Similarity=0.253 Sum_probs=18.4
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
.++..|.|+|++||||||+++.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999998543
No 258
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.90 E-value=0.0032 Score=62.22 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=21.0
Q ss_pred cEEEEECCCcchHHHHHHHHhcCC
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+.++|+|++|||||||++.|++-+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999998643
No 259
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.88 E-value=0.0021 Score=59.38 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=26.7
Q ss_pred cEEEEECCCcchHHHHHHHHhcCCCCCC---CeEEECC
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRSFDTHS---GSIRIDG 520 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl~~p~~---G~I~idG 520 (617)
..++|+|++|||||||+..|++.+.... |.|..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 4799999999999999999988765332 4455444
No 260
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.86 E-value=0.0041 Score=58.06 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=22.0
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
++..|+|+|++||||||+.+.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999987543
No 261
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.86 E-value=0.0022 Score=68.37 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=36.5
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~ 524 (617)
++..++++|++||||||++..|++.+.+..++|.+-+.|..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 57899999999999999999999999999999988666653
No 262
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.85 E-value=0.004 Score=57.37 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=20.4
Q ss_pred cEEEEECCCcchHHHHHHHHhc
Q 007122 486 KSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~g 507 (617)
..+.|+|++||||||+++.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999987
No 263
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.84 E-value=0.003 Score=59.36 Aligned_cols=28 Identities=32% Similarity=0.475 Sum_probs=24.6
Q ss_pred EeCCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 482 VPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 482 I~~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
++++..|+|+|++||||||+.+.|...+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999998754
No 264
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.74 E-value=0.0052 Score=59.05 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=23.4
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
++|..|.|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998654
No 265
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.69 E-value=0.013 Score=53.47 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=22.3
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhc
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~g 507 (617)
++.-+|+++|++|+|||||++.+.+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3566899999999999999999976
No 266
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.65 E-value=0.0046 Score=57.57 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.3
Q ss_pred EEEEECCCcchHHHHHHHHhcCCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSFD 510 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~~ 510 (617)
.|.|.|++||||||+++.|..-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987553
No 267
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.64 E-value=0.0095 Score=53.83 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=19.8
Q ss_pred EEEEECCCcchHHHHHHHHhc
Q 007122 487 SVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~g 507 (617)
+++++|++|+|||||++.+++
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999987
No 268
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.64 E-value=0.0061 Score=57.59 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.5
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
++..|.|+|++||||||+++.|...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998643
No 269
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.61 E-value=0.0046 Score=57.44 Aligned_cols=25 Identities=44% Similarity=0.600 Sum_probs=21.4
Q ss_pred CcEEEEECCCcchHHHHHHHHhcCC
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+.+|+|+|++||||||+.+.|...+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3469999999999999999997643
No 270
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.59 E-value=0.0049 Score=57.99 Aligned_cols=22 Identities=41% Similarity=0.468 Sum_probs=20.2
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
++++||++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999754
No 271
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.58 E-value=0.0038 Score=63.37 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=27.0
Q ss_pred EEEeCCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 480 l~I~~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+.++++..+.|.||+|+|||||++.+++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 457889999999999999999999999865
No 272
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.57 E-value=0.0057 Score=58.41 Aligned_cols=23 Identities=22% Similarity=0.576 Sum_probs=20.1
Q ss_pred EEEEECCCcchHHHHHHHHhcCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+++|+|++||||||+++.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999996543
No 273
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.53 E-value=0.0067 Score=55.47 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=20.9
Q ss_pred CcEEEEECCCcchHHHHHHHHhcC
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
-+.++|+|..||||||+.+.|+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999753
No 274
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.52 E-value=0.0059 Score=59.00 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=22.5
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
.++..|.|+|++||||||+++.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456889999999999999999998544
No 275
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.51 E-value=0.0063 Score=57.47 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.3
Q ss_pred CcEEEEECCCcchHHHHHHHHhcC
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
...++|+|.+||||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 347999999999999999999864
No 276
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.51 E-value=0.0063 Score=56.96 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=20.9
Q ss_pred EEEEECCCcchHHHHHHHHhcCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
.|+|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998755
No 277
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.48 E-value=0.0068 Score=55.25 Aligned_cols=22 Identities=45% Similarity=0.530 Sum_probs=20.1
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+|+|+|++||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 278
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.48 E-value=0.0058 Score=55.98 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=21.0
Q ss_pred cEEEEECCCcchHHHHHHHHhcCC
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
..|.|+|++||||||+++.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998643
No 279
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.47 E-value=0.0061 Score=57.64 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=20.9
Q ss_pred EEEEECCCcchHHHHHHHHhcCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
.++|.|++||||||+.+.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998743
No 280
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.44 E-value=0.0069 Score=57.21 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=22.1
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+...|+|+|++||||||+.+.|+..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34579999999999999999998543
No 281
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.44 E-value=0.0068 Score=57.94 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.2
Q ss_pred EEEEECCCcchHHHHHHHHhcCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+++|+|++||||||+++.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997544
No 282
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.41 E-value=0.0058 Score=56.91 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=22.2
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
.+..|+|+|++||||||+++.|...+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999997543
No 283
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.39 E-value=0.01 Score=53.54 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.5
Q ss_pred EEEEECCCcchHHHHHHHHhcCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999988653
No 284
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.38 E-value=0.0077 Score=59.05 Aligned_cols=27 Identities=30% Similarity=0.308 Sum_probs=23.2
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+++..++|.|++||||||+++.|+.-+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999997544
No 285
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.38 E-value=0.0071 Score=54.53 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=20.0
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+++++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999998753
No 286
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.37 E-value=0.0039 Score=62.99 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=19.6
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
++-.|+|.|+|||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998744
No 287
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.36 E-value=0.0061 Score=58.64 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=22.7
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
++..|.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998644
No 288
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.35 E-value=0.0067 Score=54.72 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.5
Q ss_pred EEEEECCCcchHHHHHHHHhcCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 68999999999999999998754
No 289
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.34 E-value=0.0078 Score=59.17 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.4
Q ss_pred cEEEEECCCcchHHHHHHHHhcCC
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
=+|+|||++|+|||||++.|+|--
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999999754
No 290
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.31 E-value=0.008 Score=56.03 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=20.8
Q ss_pred EEEEECCCcchHHHHHHHHhcCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
.++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 291
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.31 E-value=0.0095 Score=61.12 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=24.5
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCCC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~~ 510 (617)
+++..+.|+||||||||||...|+.-+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3567899999999999999999997663
No 292
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.31 E-value=0.014 Score=55.21 Aligned_cols=21 Identities=24% Similarity=0.670 Sum_probs=19.1
Q ss_pred EEEEECCCcchHHHHHHHHhc
Q 007122 487 SVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~g 507 (617)
+++|+|++|+|||||++.+.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999997764
No 293
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.29 E-value=0.0089 Score=54.36 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.6
Q ss_pred EEEEECCCcchHHHHHHHHhcCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+++|+|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 69999999999999999998754
No 294
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.28 E-value=0.018 Score=53.15 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=25.2
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcC----CCCCCC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRS----FDTHSG 514 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl----~~p~~G 514 (617)
++.=+++++|++|+|||||++.+.+- +.|+-|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~ 51 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLG 51 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCc
Confidence 45568999999999999999999863 445555
No 295
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.28 E-value=0.01 Score=54.25 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.2
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+++++|++|+|||||++.+++-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999998864
No 296
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.26 E-value=0.0082 Score=59.06 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.7
Q ss_pred cEEEEECCCcchHHHHHHHHhcC
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
-.|+|.|++||||||+.+.|...
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999763
No 297
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.26 E-value=0.0091 Score=54.00 Aligned_cols=23 Identities=39% Similarity=0.410 Sum_probs=20.1
Q ss_pred EEEEECCCcchHHHHHHHHhcCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999997643
No 298
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.22 E-value=0.0087 Score=53.73 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=19.2
Q ss_pred EEEEECCCcchHHHHHHHHhc
Q 007122 487 SVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~g 507 (617)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999988874
No 299
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.20 E-value=0.005 Score=67.52 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.4
Q ss_pred CCC-ChHHHHHHHHHHHHhCCC--CCC
Q 007122 594 LKL-SGGEKQRVALARAFLKAP--PIL 617 (617)
Q Consensus 594 ~~L-SGGQrQRlaiARAll~~p--~IL 617 (617)
..| |||||||++||||++.+| ++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~l 421 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSV 421 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEE
Confidence 456 999999999999999999 764
No 300
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.20 E-value=0.0056 Score=63.94 Aligned_cols=22 Identities=45% Similarity=0.659 Sum_probs=20.5
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+++|||++|+|||||++.|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 301
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.17 E-value=0.0092 Score=53.41 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.7
Q ss_pred EEEEECCCcchHHHHHHHHhcCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
No 302
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.17 E-value=0.012 Score=54.77 Aligned_cols=21 Identities=38% Similarity=0.706 Sum_probs=19.7
Q ss_pred EEEEECCCcchHHHHHHHHhc
Q 007122 487 SVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~g 507 (617)
+++|+|++|+|||||++.|++
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 689999999999999999886
No 303
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.17 E-value=0.0083 Score=59.72 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=21.6
Q ss_pred EEEEECCCcchHHHHHHHHhcCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+++++|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999875
No 304
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.17 E-value=0.012 Score=54.70 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.9
Q ss_pred cEEEEECCCcchHHHHHHHHhcC
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
=+++++|++|+|||||++.|++-
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999875
No 305
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.16 E-value=0.0091 Score=53.65 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.5
Q ss_pred EEEEECCCcchHHHHHHHHhc
Q 007122 487 SVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~g 507 (617)
+++++|++|+|||||++.+.+
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999875
No 306
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.009 Score=55.56 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=22.5
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+.-+++++|++|+|||||++.|++-.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34489999999999999999998754
No 307
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.16 E-value=0.008 Score=59.99 Aligned_cols=22 Identities=45% Similarity=0.771 Sum_probs=20.0
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
++++||++|+|||||++.|++-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998764
No 308
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.12 E-value=0.01 Score=58.71 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.6
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
.++..|.|+|++||||||+++.|...
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999864
No 309
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.12 E-value=0.0095 Score=53.61 Aligned_cols=21 Identities=24% Similarity=0.558 Sum_probs=19.5
Q ss_pred EEEEECCCcchHHHHHHHHhc
Q 007122 487 SVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~g 507 (617)
+++++|++|+|||||++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999875
No 310
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.12 E-value=0.0084 Score=53.67 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=19.9
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+++++|++|+|||||++.+++-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998754
No 311
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.12 E-value=0.014 Score=55.14 Aligned_cols=35 Identities=34% Similarity=0.440 Sum_probs=27.6
Q ss_pred ccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcC
Q 007122 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
..++..-+++ .|..+.|+|+||||||||+..|+.-
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3455655554 6889999999999999999888753
No 312
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.11 E-value=0.0097 Score=53.82 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=20.0
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999998854
No 313
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.08 E-value=0.01 Score=55.00 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.3
Q ss_pred EEEEECCCcchHHHHHHHHhcCCCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSFDT 511 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~~p 511 (617)
+++++|++|+|||||++.+.|-+.+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 6899999999999999999987643
No 314
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.07 E-value=0.01 Score=54.14 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=20.2
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+++++|++|+|||||++.|.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 315
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.07 E-value=0.01 Score=53.54 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=19.2
Q ss_pred EEEEECCCcchHHHHHHHHhc
Q 007122 487 SVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~g 507 (617)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999988874
No 316
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.06 E-value=0.012 Score=60.87 Aligned_cols=42 Identities=17% Similarity=0.167 Sum_probs=32.3
Q ss_pred EEeCCcEEEEECCCcchHHHHHHHHhcC--CCC-----CCCeEEECCEe
Q 007122 481 VVPAGKSVAIVGTSGSGKSTILRLLFRS--FDT-----HSGSIRIDGQD 522 (617)
Q Consensus 481 ~I~~G~~vaIVG~SGsGKSTL~~LL~gl--~~p-----~~G~I~idG~~ 522 (617)
-+++|+.+.|.|++|||||||+.-++.. .++ ..+.++++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 5899999999999999999999888764 222 33456777643
No 317
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.04 E-value=0.01 Score=54.21 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=19.7
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+++++|++|+|||||++.+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999888753
No 318
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.04 E-value=0.0051 Score=66.48 Aligned_cols=35 Identities=23% Similarity=0.483 Sum_probs=29.7
Q ss_pred ccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
..++++++.+++| +.|+||+|+|||||++.+++..
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 4566777788877 8999999999999999999754
No 319
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.03 E-value=0.011 Score=54.03 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=19.5
Q ss_pred EEEEECCCcchHHHHHHHHhc
Q 007122 487 SVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~g 507 (617)
+++++|++|+|||||++.+.+
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999875
No 320
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.03 E-value=0.0092 Score=53.88 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=19.9
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999998853
No 321
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.00 E-value=0.0082 Score=58.37 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=21.8
Q ss_pred EeCCcEEEEECCCcchHHHHHHHHh
Q 007122 482 VPAGKSVAIVGTSGSGKSTILRLLF 506 (617)
Q Consensus 482 I~~G~~vaIVG~SGsGKSTL~~LL~ 506 (617)
+..|+.+.++|+|||||||++.+.+
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 4579999999999999999887664
No 322
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.00 E-value=0.0098 Score=59.69 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.9
Q ss_pred CcEEEEECCCcchHHHHHHHHhc
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~g 507 (617)
...|+|+|++||||||+++.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999984
No 323
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.96 E-value=0.02 Score=53.94 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=19.6
Q ss_pred EEEEECCCcchHHHHHHHHhc
Q 007122 487 SVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~g 507 (617)
+|+|+|++|+|||||++.|.+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999999875
No 324
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.96 E-value=0.011 Score=53.21 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=19.5
Q ss_pred EEEEECCCcchHHHHHHHHhc
Q 007122 487 SVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~g 507 (617)
+++++|++|+|||||++.+++
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999998885
No 325
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.95 E-value=0.01 Score=55.24 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.5
Q ss_pred CcEEEEECCCcchHHHHHHHHhcC
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
--+++++|++|+|||||++.|++-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999874
No 326
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.94 E-value=0.011 Score=56.70 Aligned_cols=26 Identities=23% Similarity=0.546 Sum_probs=22.9
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+|..|.|+|+.||||||+++.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999997644
No 327
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.92 E-value=0.012 Score=58.70 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=21.7
Q ss_pred cEEEEECCCcchHHHHHHHHhcCC
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
-+++++|++|+|||||++.|.|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 379999999999999999999853
No 328
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.90 E-value=0.013 Score=54.18 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=20.0
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988864
No 329
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.89 E-value=0.011 Score=54.86 Aligned_cols=24 Identities=46% Similarity=0.618 Sum_probs=21.4
Q ss_pred cEEEEECCCcchHHHHHHHHhcCC
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
-+++++|++|+|||||++.+++-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 389999999999999999998753
No 330
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.88 E-value=0.0085 Score=60.54 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=29.5
Q ss_pred CcEEEEECCCcchHHHHHHHHhcCCCCCCCeE-EECC
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI-RIDG 520 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I-~idG 520 (617)
...+.|+||+|+||||+++.+++...+.+|.+ .+|.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~ 83 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 83 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEG
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeec
Confidence 35799999999999999999999887777754 4443
No 331
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.88 E-value=0.012 Score=54.17 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.0
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+++++|++|+|||||++.|.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999853
No 332
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.83 E-value=0.025 Score=51.88 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=19.3
Q ss_pred EEEEECCCcchHHHHHHHHhc
Q 007122 487 SVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~g 507 (617)
+++++|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998884
No 333
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.83 E-value=0.014 Score=53.19 Aligned_cols=22 Identities=18% Similarity=0.484 Sum_probs=20.0
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+++++|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999998853
No 334
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.82 E-value=0.013 Score=54.22 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.7
Q ss_pred EEEEECCCcchHHHHHHHHhc
Q 007122 487 SVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~g 507 (617)
+++|+|++|+|||||++.+++
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 335
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.81 E-value=0.013 Score=52.64 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=19.2
Q ss_pred EEEEECCCcchHHHHHHHHhc
Q 007122 487 SVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~g 507 (617)
+++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999998874
No 336
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.78 E-value=0.012 Score=54.33 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.3
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+++++|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999999874
No 337
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.78 E-value=0.011 Score=56.45 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.2
Q ss_pred CcEEEEECCCcchHHHHHHHHhcCC
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
.-+|+|+|++|+|||||++.|++-.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3489999999999999999999864
No 338
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.78 E-value=0.022 Score=52.19 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=23.2
Q ss_pred EEEEECCCcchHHHHHHHHhc-----CCCCCCCe
Q 007122 487 SVAIVGTSGSGKSTILRLLFR-----SFDTHSGS 515 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~g-----l~~p~~G~ 515 (617)
+++++|++|+|||||++.+.+ -++|+.|.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~ 41 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIEN 41 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCE
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccc
Confidence 799999999999999998882 34555553
No 339
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.75 E-value=0.016 Score=60.48 Aligned_cols=30 Identities=37% Similarity=0.540 Sum_probs=24.7
Q ss_pred eeeeEEEeCCcEEEEECCCcchHHHHHHHHh
Q 007122 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (617)
Q Consensus 476 ~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~ 506 (617)
++..+++.+ ...+|+|+||||||||+..|.
T Consensus 17 ~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 17 VNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred cceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 456666666 489999999999999998775
No 340
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.74 E-value=0.014 Score=52.82 Aligned_cols=31 Identities=32% Similarity=0.371 Sum_probs=24.2
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcC----CCCCCC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRS----FDTHSG 514 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl----~~p~~G 514 (617)
+.-+++++|++|+|||||++.+.+- +.|+-|
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~ 40 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIG 40 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCc
Confidence 3457999999999999999998752 345555
No 341
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.72 E-value=0.02 Score=53.32 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=24.7
Q ss_pred CcEEEEECCCcchHHHHHHHHhc------CCCCCCC
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFR------SFDTHSG 514 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~g------l~~p~~G 514 (617)
.-+|+|+|++|+|||||++.+++ -|.|+-|
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~ 52 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG 52 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc
Confidence 34789999999999999999987 4456666
No 342
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.72 E-value=0.014 Score=53.35 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=19.5
Q ss_pred EEEEECCCcchHHHHHHHHhc
Q 007122 487 SVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~g 507 (617)
+++++|++|+|||||++.+.+
T Consensus 12 ~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 799999999999999998875
No 343
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.69 E-value=0.014 Score=53.05 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.0
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+++++|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998853
No 344
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.67 E-value=0.013 Score=53.38 Aligned_cols=21 Identities=14% Similarity=0.457 Sum_probs=19.5
Q ss_pred EEEEECCCcchHHHHHHHHhc
Q 007122 487 SVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~g 507 (617)
+++++|++|+|||||++.+++
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999874
No 345
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.65 E-value=0.015 Score=53.91 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=19.9
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+|+++|++|+|||||++.|++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7999999999999999998753
No 346
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.64 E-value=0.014 Score=55.76 Aligned_cols=23 Identities=17% Similarity=0.511 Sum_probs=20.3
Q ss_pred EEEEECCCcchHHHHHHHHhcCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
++.|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997644
No 347
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.64 E-value=0.015 Score=53.15 Aligned_cols=22 Identities=23% Similarity=0.590 Sum_probs=20.1
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+++++|++|+|||||++.+++-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999988864
No 348
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.64 E-value=0.017 Score=58.52 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=22.0
Q ss_pred CcEEEEECCCcchHHHHHHHHhcCC
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+..++|+||||||||||+..|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 5679999999999999999998654
No 349
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.60 E-value=0.016 Score=53.26 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.5
Q ss_pred EEEEECCCcchHHHHHHHHhc
Q 007122 487 SVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~g 507 (617)
+|+++|++|+|||||++.+++
T Consensus 20 ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 699999999999999999885
No 350
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.59 E-value=0.023 Score=52.88 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=20.2
Q ss_pred cEEEEECCCcchHHHHHHHHhc
Q 007122 486 KSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~g 507 (617)
=+|+++|++|+|||||++.+.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 4799999999999999999986
No 351
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.59 E-value=0.016 Score=58.74 Aligned_cols=22 Identities=50% Similarity=0.599 Sum_probs=20.6
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+++|||++|+|||||++.|+|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999984
No 352
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.57 E-value=0.019 Score=55.71 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=22.8
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
++..|.|+|+.||||||+++.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998654
No 353
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.55 E-value=0.015 Score=57.47 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=21.5
Q ss_pred EEEEECCCcchHHHHHHHHhcCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+++++|.+|||||||++.|.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999874
No 354
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.55 E-value=0.012 Score=56.16 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.9
Q ss_pred CcEEEEECCCcchHHHHHHHHhcCC
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+..++|+|++||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998743
No 355
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.52 E-value=0.017 Score=55.57 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.4
Q ss_pred EEEEECCCcchHHHHHHHHhcCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
.+.|+|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997644
No 356
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.52 E-value=0.016 Score=57.14 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.3
Q ss_pred cEEEEECCCcchHHHHHHHHhcCC
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
-+|+|+|++|+|||||++.|+|-.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998743
No 357
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.49 E-value=0.013 Score=56.41 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=23.1
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
++..+.|+||+|+||||+++.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999987543
No 358
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.48 E-value=0.017 Score=53.54 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.9
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+++|+|++|+|||||++.+++-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999988753
No 359
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.48 E-value=0.017 Score=54.20 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.5
Q ss_pred cEEEEECCCcchHHHHHHHHhcC
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
-+++|+|++|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 37999999999999999998764
No 360
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.47 E-value=0.012 Score=53.98 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=21.3
Q ss_pred CCcEEEEECCCcchHHHHHHHHhc
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~g 507 (617)
+.-+++++|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 455899999999999999999984
No 361
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.47 E-value=0.02 Score=51.05 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=28.4
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG 520 (617)
+.+.-+.|.||+|+|||++++.+........+...+|.
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~ 59 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRE 59 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEEC
Confidence 34566899999999999999999987654444433443
No 362
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.44 E-value=0.018 Score=59.23 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=21.9
Q ss_pred cEEEEECCCcchHHHHHHHHhcCCC
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRSFD 510 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl~~ 510 (617)
..++|+||||||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999887553
No 363
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.43 E-value=0.017 Score=54.38 Aligned_cols=31 Identities=23% Similarity=0.332 Sum_probs=25.6
Q ss_pred cEEEEECCCcchHHHHHHHHhcCCCCCCCeE
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSI 516 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I 516 (617)
..+.|.||+|+|||||++.++.........+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~ 85 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSS 85 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 7899999999999999999998665444444
No 364
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.42 E-value=0.016 Score=53.35 Aligned_cols=21 Identities=29% Similarity=0.670 Sum_probs=19.5
Q ss_pred EEEEECCCcchHHHHHHHHhc
Q 007122 487 SVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~g 507 (617)
+++++|++|+|||||++.+.+
T Consensus 12 ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 789999999999999998875
No 365
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.41 E-value=0.018 Score=53.99 Aligned_cols=29 Identities=24% Similarity=0.507 Sum_probs=23.1
Q ss_pred EEEEECCCcchHHHHHHHHhcC-----CCCCCCe
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS-----FDTHSGS 515 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl-----~~p~~G~ 515 (617)
+|+|+|++|+|||||++.+.+- |.|+.|.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~ 49 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD 49 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccce
Confidence 6899999999999999998743 3455554
No 366
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.41 E-value=0.019 Score=53.59 Aligned_cols=22 Identities=27% Similarity=0.606 Sum_probs=19.7
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+|+++|++|+|||||++.|.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 367
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.40 E-value=0.019 Score=53.29 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=19.3
Q ss_pred EEEEECCCcchHHHHHHHHhc
Q 007122 487 SVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~g 507 (617)
+|+++|++|+|||||++.+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999998874
No 368
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.39 E-value=0.018 Score=53.84 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=19.9
Q ss_pred EEEEECCCcchHHHHHHHHhc
Q 007122 487 SVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~g 507 (617)
+++|||++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999999986
No 369
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.38 E-value=0.02 Score=53.64 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.0
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+++|+|++|+|||||++.+++-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998864
No 370
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.37 E-value=0.024 Score=53.75 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=20.4
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+++++|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999864
No 371
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.35 E-value=0.02 Score=55.10 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=21.0
Q ss_pred cEEEEECCCcchHHHHHHHHhcC
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
-+|+++|++|+|||||++.+++-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999874
No 372
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.35 E-value=0.017 Score=53.81 Aligned_cols=28 Identities=29% Similarity=0.565 Sum_probs=23.0
Q ss_pred EEEEECCCcchHHHHHHHHhcC-----CCCCCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS-----FDTHSG 514 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl-----~~p~~G 514 (617)
+|+|+|++|+|||||++.+++- +.|+.|
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~ 57 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIG 57 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 6899999999999999988753 455555
No 373
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.34 E-value=0.017 Score=55.95 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=21.4
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
.+|..|.|.|++||||||+++.|...+
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999988654
No 374
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.34 E-value=0.02 Score=53.54 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=21.2
Q ss_pred EEEEECCCcchHHHHHHHHhcCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+++++|++|+|||||++.+.+-+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 79999999999999999999854
No 375
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.33 E-value=0.022 Score=54.66 Aligned_cols=28 Identities=32% Similarity=0.384 Sum_probs=24.2
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCCC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~~ 510 (617)
.+|..|.|.|++||||||+++.|...++
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999976554
No 376
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.31 E-value=0.03 Score=51.63 Aligned_cols=33 Identities=24% Similarity=0.217 Sum_probs=25.1
Q ss_pred cceeeeEEEeCCcEEEEECCCcchHHHHHHHHhc
Q 007122 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 474 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~g 507 (617)
.++..-++ -.|.-+.|.|+||+||||++..|..
T Consensus 6 ~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34443333 4689999999999999999987753
No 377
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.30 E-value=0.02 Score=52.54 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=19.2
Q ss_pred EEEEECCCcchHHHHHHHHhc
Q 007122 487 SVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~g 507 (617)
+++++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 789999999999999988873
No 378
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.28 E-value=0.02 Score=54.47 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.1
Q ss_pred cEEEEECCCcchHHHHHHHHhcCC
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
-+++++|++|+|||||++.|.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999988643
No 379
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.27 E-value=0.021 Score=58.07 Aligned_cols=23 Identities=48% Similarity=0.606 Sum_probs=21.2
Q ss_pred cEEEEECCCcchHHHHHHHHhcC
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
-+|||+|++|+|||||++.|+|-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 37999999999999999999985
No 380
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.27 E-value=0.018 Score=54.12 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.2
Q ss_pred CcEEEEECCCcchHHHHHHHHhcC
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
.=+++|+|++|+|||||++.+.+-
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 447999999999999999998864
No 381
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.26 E-value=7.9 Score=42.53 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=9.0
Q ss_pred eEEEeEEEeecCC
Q 007122 459 IQFDNVHFSYLTE 471 (617)
Q Consensus 459 I~~~nvsF~Y~~~ 471 (617)
-.++|++|.-+++
T Consensus 357 ~~l~~i~l~i~~G 369 (582)
T 3b5x_A 357 PALSHVSFSIPQG 369 (582)
T ss_pred cccccceEEECCC
Confidence 3578888887543
No 382
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.24 E-value=0.02 Score=57.20 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.7
Q ss_pred cEEEEECCCcchHHHHHHHHhcCC
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
-+++++|.+|||||||++.|+|-.
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999854
No 383
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.23 E-value=0.027 Score=52.28 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.1
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+++|+|++|+|||||++.+.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999998863
No 384
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.22 E-value=0.021 Score=53.05 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.9
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+++|+|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999988853
No 385
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.20 E-value=0.02 Score=52.31 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=19.9
Q ss_pred cEEEEECCCcchHHHHHHHHhc
Q 007122 486 KSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~g 507 (617)
=+++++|++|+|||||++-+.+
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3799999999999999998875
No 386
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.17 E-value=0.019 Score=53.35 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.1
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+|+|+|++|+|||||++.+.+-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 6899999999999999998863
No 387
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.17 E-value=0.018 Score=53.35 Aligned_cols=24 Identities=38% Similarity=0.378 Sum_probs=21.2
Q ss_pred cEEEEECCCcchHHHHHHHHhcCC
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
=+|+++|++|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999998643
No 388
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.16 E-value=0.025 Score=54.66 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=24.4
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCCC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~~ 510 (617)
++|..|++.|.+||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999986543
No 389
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.16 E-value=0.0021 Score=74.29 Aligned_cols=46 Identities=22% Similarity=0.429 Sum_probs=37.4
Q ss_pred eeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEeCCC
Q 007122 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE 525 (617)
Q Consensus 478 isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~i~~ 525 (617)
.++.+++|+.+.++||+|+|||||++.|++... .+-+.+++.++.+
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLT 549 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSSTT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhhh
Confidence 466788999999999999999999999999874 3466677666543
No 390
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.15 E-value=0.024 Score=56.09 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=21.1
Q ss_pred EEEEECCCcchHHHHHHHHhcCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+++++|.+|+|||||++.|+|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999854
No 391
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.15 E-value=0.024 Score=60.23 Aligned_cols=37 Identities=30% Similarity=0.470 Sum_probs=28.4
Q ss_pred EeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEe
Q 007122 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD 522 (617)
Q Consensus 482 I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~ 522 (617)
=++.+.+.|+|++||||||+++.|+.-+ |-..++.-+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~----~~~~i~~D~ 291 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHVNRDT 291 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG----TCEECCGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc----CcEEEccch
Confidence 3567899999999999999999988643 445555433
No 392
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=94.15 E-value=0.021 Score=60.93 Aligned_cols=25 Identities=44% Similarity=0.533 Sum_probs=21.4
Q ss_pred CCCCChHHHHHHHHHHHHh----CCCCCC
Q 007122 593 GLKLSGGEKQRVALARAFL----KAPPIL 617 (617)
Q Consensus 593 G~~LSGGQrQRlaiARAll----~~p~IL 617 (617)
...||||||||++|||+|. ++|++|
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~l 359 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFF 359 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEE
Confidence 3469999999999999998 678764
No 393
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.14 E-value=0.022 Score=53.55 Aligned_cols=22 Identities=27% Similarity=0.668 Sum_probs=19.6
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+|+|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6999999999999999998853
No 394
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.12 E-value=0.025 Score=57.77 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=22.1
Q ss_pred cEEEEECCCcchHHHHHHHHhcCCC
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRSFD 510 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl~~ 510 (617)
..+.|+||+|||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999997553
No 395
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.12 E-value=0.026 Score=51.63 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=21.0
Q ss_pred CCcEEEEECCCcchHHHHHHHHhc
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~g 507 (617)
+-=+++++|++|+|||||++.+.+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999998875
No 396
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.10 E-value=0.027 Score=51.63 Aligned_cols=27 Identities=22% Similarity=0.430 Sum_probs=23.3
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
..+..+.|+|++|+||||+++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 446789999999999999999988765
No 397
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.09 E-value=0.023 Score=52.99 Aligned_cols=31 Identities=29% Similarity=0.483 Sum_probs=24.3
Q ss_pred CcEEEEECCCcchHHHHHHHHhcC-----CCCCCCe
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFRS-----FDTHSGS 515 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~gl-----~~p~~G~ 515 (617)
.-+++++|++|+|||||++.+++- |+|+.|.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~ 63 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLES 63 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCc
Confidence 447999999999999999988753 3455553
No 398
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.09 E-value=0.011 Score=63.21 Aligned_cols=44 Identities=20% Similarity=0.456 Sum_probs=33.6
Q ss_pred cceeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEE
Q 007122 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI 518 (617)
Q Consensus 474 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~i 518 (617)
+++.+ ..+-+|++++|+|+||+|||||++.|++-.....|.|.+
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 44444 577899999999999999999999988765544455443
No 399
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.09 E-value=0.023 Score=52.87 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=20.1
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7999999999999999998863
No 400
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.08 E-value=0.023 Score=52.56 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=21.1
Q ss_pred CCcEEEEECCCcchHHHHHHHHhc
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~g 507 (617)
+.-+++++|++|+|||||++.+.+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999884
No 401
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.08 E-value=0.023 Score=52.67 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.9
Q ss_pred cEEEEECCCcchHHHHHHHHhc
Q 007122 486 KSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~g 507 (617)
=+++|+|++|+|||||++.+++
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999984
No 402
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.06 E-value=0.021 Score=53.94 Aligned_cols=23 Identities=26% Similarity=0.561 Sum_probs=20.8
Q ss_pred cEEEEECCCcchHHHHHHHHhcC
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
-+|+++|++|+|||||++.+.+-
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999999863
No 403
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.05 E-value=0.023 Score=53.53 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.5
Q ss_pred CcEEEEECCCcchHHHHHHHHhc
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~g 507 (617)
.=+|+|+|++|+|||||++.+++
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 44799999999999999998884
No 404
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.05 E-value=0.024 Score=57.07 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=20.4
Q ss_pred cEEEEECCCcchHHHHHHHHhc
Q 007122 486 KSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~g 507 (617)
..+.|+|++||||||+++.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 405
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.05 E-value=0.024 Score=53.14 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=21.1
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+.=+|+|+|++|+|||||++.+++-
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3458999999999999999988753
No 406
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.05 E-value=0.025 Score=55.21 Aligned_cols=27 Identities=30% Similarity=0.564 Sum_probs=24.3
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcCCC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRSFD 510 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl~~ 510 (617)
+|..|+|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999987554
No 407
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.04 E-value=0.024 Score=52.51 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.4
Q ss_pred cEEEEECCCcchHHHHHHHHhcC
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
-+++++|++|+|||||++.|.+-
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 37999999999999999998753
No 408
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.04 E-value=0.025 Score=56.77 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=24.0
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
.++..+.|.||+|+||||+++.+++.+
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998754
No 409
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.03 E-value=0.02 Score=52.63 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=20.1
Q ss_pred cEEEEECCCcchHHHHHHHHhc
Q 007122 486 KSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~g 507 (617)
=+++++|++|+|||||++.+.+
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3789999999999999999985
No 410
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.02 E-value=0.023 Score=56.18 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.8
Q ss_pred EEEEECCCcchHHHHHHHHhcCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+++++|++|+|||||++.|+|--
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999744
No 411
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.02 E-value=0.018 Score=56.90 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=24.1
Q ss_pred EeCCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 482 VPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 482 I~~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
.+++..|+|.|..||||||+++.|...+
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578899999999999999999998765
No 412
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.02 E-value=0.027 Score=53.42 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+|+|+|++|+|||||++.|++-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 413
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.01 E-value=0.026 Score=55.96 Aligned_cols=30 Identities=37% Similarity=0.464 Sum_probs=23.1
Q ss_pred cEEEEECCCcchHHHHHHHHhcCCCCCCCe
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGS 515 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~ 515 (617)
.++++||.+|+|||||++.|.|-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 589999999999999999999876544443
No 414
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.99 E-value=0.028 Score=56.94 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.9
Q ss_pred CcEEEEECCCcchHHHHHHHHhcCC
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
...+.|+||||||||||+..|+.-+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999998654
No 415
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.99 E-value=0.025 Score=55.07 Aligned_cols=26 Identities=31% Similarity=0.594 Sum_probs=23.2
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+|..|+|.|..||||||+++.|...+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998655
No 416
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.98 E-value=0.027 Score=54.05 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=24.2
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcCCC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRSFD 510 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl~~ 510 (617)
+|..|.+.|++||||||+++.|...++
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999987654
No 417
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.97 E-value=0.022 Score=59.31 Aligned_cols=38 Identities=26% Similarity=0.601 Sum_probs=30.1
Q ss_pred eCCc--EEEEECCCcchHHHHHHHHhcCCCCCC--CeEEECC
Q 007122 483 PAGK--SVAIVGTSGSGKSTILRLLFRSFDTHS--GSIRIDG 520 (617)
Q Consensus 483 ~~G~--~vaIVG~SGsGKSTL~~LL~gl~~p~~--G~I~idG 520 (617)
+++. .+.|+||+|+||||+++.+++...+.. .-+.++.
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~ 81 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYING 81 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEET
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeC
Confidence 3456 899999999999999999999887653 3455553
No 418
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.96 E-value=0.024 Score=56.35 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.9
Q ss_pred EEEEECCCcchHHHHHHHHhcCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+++++|++|+|||||++.|++-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998744
No 419
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.96 E-value=0.028 Score=52.55 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=20.6
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+.=+++++|++|+|||||++.+.+-
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999988753
No 420
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.94 E-value=0.025 Score=53.78 Aligned_cols=21 Identities=33% Similarity=0.676 Sum_probs=19.8
Q ss_pred EEEEECCCcchHHHHHHHHhc
Q 007122 487 SVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~g 507 (617)
+++++|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 799999999999999999986
No 421
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.92 E-value=0.026 Score=52.33 Aligned_cols=29 Identities=28% Similarity=0.547 Sum_probs=23.1
Q ss_pred EEEEECCCcchHHHHHHHHhc-----CCCCCCCe
Q 007122 487 SVAIVGTSGSGKSTILRLLFR-----SFDTHSGS 515 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~g-----l~~p~~G~ 515 (617)
+|+++|++|+|||||++-+.+ -|.|+-|.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~ 56 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKRFISEYDPNLED 56 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCcccCCCccc
Confidence 799999999999999987764 24566653
No 422
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.92 E-value=0.024 Score=57.41 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=21.4
Q ss_pred EEEEECCCcchHHHHHHHHhcCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
.++|||++|+|||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999864
No 423
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.88 E-value=0.029 Score=53.96 Aligned_cols=29 Identities=28% Similarity=0.509 Sum_probs=25.9
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCCCC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDT 511 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~~p 511 (617)
++|..|.+-|++||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47999999999999999999999876654
No 424
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.84 E-value=0.027 Score=53.31 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.0
Q ss_pred CcEEEEECCCcchHHHHHHHHhc
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~g 507 (617)
--+++++|++|+|||||++.+++
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34799999999999999998875
No 425
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.84 E-value=9.4 Score=41.90 Aligned_cols=13 Identities=8% Similarity=0.153 Sum_probs=9.8
Q ss_pred eEEEeEEEeecCC
Q 007122 459 IQFDNVHFSYLTE 471 (617)
Q Consensus 459 I~~~nvsF~Y~~~ 471 (617)
-.++|++|.-+++
T Consensus 357 ~~l~~v~~~i~~G 369 (582)
T 3b60_A 357 PALRNINLKIPAG 369 (582)
T ss_dssp CSEEEEEEEECTT
T ss_pred ccccceeEEEcCC
Confidence 4689999987644
No 426
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.83 E-value=0.019 Score=52.69 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=9.5
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999988753
No 427
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.79 E-value=0.029 Score=58.21 Aligned_cols=25 Identities=36% Similarity=0.432 Sum_probs=22.4
Q ss_pred CcEEEEECCCcchHHHHHHHHhcCC
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
.-++++||++|+|||||++.|+|..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3489999999999999999999864
No 428
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.78 E-value=0.025 Score=56.78 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.4
Q ss_pred EEEEECCCcchHHHHHHHHhcCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+|+|||++|+|||||++.|+|--
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999854
No 429
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.77 E-value=0.033 Score=56.56 Aligned_cols=27 Identities=37% Similarity=0.834 Sum_probs=23.1
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+++-+++++|++|+|||||++.+++-+
T Consensus 1 ~~~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 1 PLGSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC
Confidence 356789999999999999999987653
No 430
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.77 E-value=0.032 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.8
Q ss_pred cEEEEECCCcchHHHHHHHHhcC
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
-+|+|||++|+|||||++.+.|.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999999864
No 431
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.77 E-value=0.026 Score=54.31 Aligned_cols=29 Identities=31% Similarity=0.500 Sum_probs=24.9
Q ss_pred EEeCCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 481 ~I~~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
..++.+.|.|.||.||||+|.++.|+.-|
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34667789999999999999999998655
No 432
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.74 E-value=0.033 Score=51.01 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=23.7
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCCC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~~ 510 (617)
..+..+.|+||+|+||||+++.++....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 4467789999999999999999987653
No 433
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.74 E-value=0.026 Score=53.80 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.4
Q ss_pred cEEEEECCCcchHHHHHHHHhcC
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
-+++|+|++|+|||||++-|++-
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999888764
No 434
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.73 E-value=0.026 Score=53.01 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=19.7
Q ss_pred EEEEECCCcchHHHHHHHHhc
Q 007122 487 SVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~g 507 (617)
+++++|++|+|||||++.+.+
T Consensus 27 ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999999986
No 435
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.70 E-value=0.042 Score=51.78 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=20.0
Q ss_pred CCcEEEEECCCcchHHHHHHHHhc
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~g 507 (617)
+.=+++++|++|+|||||++.+.+
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEECcCCCCHHHHHHHHHh
Confidence 345899999999999999977763
No 436
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.69 E-value=0.028 Score=52.48 Aligned_cols=25 Identities=32% Similarity=0.374 Sum_probs=21.8
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhc
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~g 507 (617)
++.-+++++|++|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3456899999999999999999874
No 437
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.69 E-value=0.014 Score=60.79 Aligned_cols=52 Identities=31% Similarity=0.454 Sum_probs=39.2
Q ss_pred ceEEEeEEEeecCCcccce-----------eeeEEEeCCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 458 SIQFDNVHFSYLTERKILD-----------GVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 458 ~I~~~nvsF~Y~~~~~vL~-----------~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
.+.|++++--||.++.-++ |.=+.|-+|++.+|+|++|+|||||++.|++..
T Consensus 137 r~~fe~l~Pi~P~~R~~le~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 137 RVNFDNLTPDYPRERFILETDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp CCCGGGSCEECCCSBCCCCCSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred ccccccCCCCCchhhccccccchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 4556666555654444444 556788999999999999999999999888753
No 438
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.60 E-value=0.018 Score=54.81 Aligned_cols=21 Identities=24% Similarity=0.631 Sum_probs=19.5
Q ss_pred EEEEECCCcchHHHHHHHHhc
Q 007122 487 SVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~g 507 (617)
+|+|+|++|+|||||++.|++
T Consensus 13 ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998885
No 439
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.57 E-value=0.016 Score=60.02 Aligned_cols=38 Identities=16% Similarity=0.426 Sum_probs=30.1
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCCCCC----CCeEEECC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTH----SGSIRIDG 520 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~----~G~I~idG 520 (617)
+++..+.|.||+|+|||||++.+++...+. ...+.+++
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 457899999999999999999999877553 23455654
No 440
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=93.56 E-value=0.028 Score=60.43 Aligned_cols=23 Identities=43% Similarity=0.524 Sum_probs=21.1
Q ss_pred cEEEEECCCcchHHHHHHHHhcC
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
-+|+|||++|+|||||++.|+|-
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 38999999999999999999983
No 441
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.49 E-value=0.035 Score=55.27 Aligned_cols=28 Identities=18% Similarity=0.407 Sum_probs=24.7
Q ss_pred EeCCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 482 VPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 482 I~~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
++++..+.|.||+|+|||||++.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4677889999999999999999998654
No 442
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.47 E-value=0.031 Score=51.90 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.9
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999988853
No 443
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.43 E-value=0.034 Score=58.34 Aligned_cols=25 Identities=40% Similarity=0.582 Sum_probs=21.4
Q ss_pred CcEEEEECCCcchHHHHHHHHhcCC
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
...++|+||||||||||+..|+.-+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3578999999999999999888644
No 444
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.36 E-value=0.026 Score=52.17 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.9
Q ss_pred CCcEEEEECCCcchHHHHHHHHhc
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~g 507 (617)
+.=+++++|++|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 445799999999999999999864
No 445
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.26 E-value=0.021 Score=58.19 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.9
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
++..+.|.||+|+|||||++.+++..
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 35689999999999999999998755
No 446
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.25 E-value=0.052 Score=52.51 Aligned_cols=24 Identities=33% Similarity=0.686 Sum_probs=21.9
Q ss_pred EeCCcEEEEECCCcchHHHHHHHH
Q 007122 482 VPAGKSVAIVGTSGSGKSTILRLL 505 (617)
Q Consensus 482 I~~G~~vaIVG~SGsGKSTL~~LL 505 (617)
+++|+.+.|.|++|+|||||+.-+
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHH
Confidence 899999999999999999998543
No 447
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.23 E-value=0.026 Score=57.55 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=29.0
Q ss_pred ccceeeeEEEeCCcEEEEECCCcchHHHHHHHHhc
Q 007122 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~g 507 (617)
+-|+++.--+++|+.+.|.|++|+|||||+.-++.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 44666655689999999999999999999877663
No 448
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=93.17 E-value=0.034 Score=58.02 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=20.8
Q ss_pred CCCChHHHHHH------HHHHHHhCC-CCCC
Q 007122 594 LKLSGGEKQRV------ALARAFLKA-PPIL 617 (617)
Q Consensus 594 ~~LSGGQrQRl------aiARAll~~-p~IL 617 (617)
..|||||+||+ ++|||+..+ |++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~l 309 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECI 309 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeE
Confidence 47999999987 678999999 9874
No 449
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.15 E-value=0.036 Score=52.95 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.0
Q ss_pred cEEEEECCCcchHHHHHHHHhcC
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
-+++|+|.+|+|||||++-+++-
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999877753
No 450
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.13 E-value=0.038 Score=51.96 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=19.3
Q ss_pred EEEEECCCcchHHHHHHHHhc
Q 007122 487 SVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~g 507 (617)
+++|+|++|+|||||++.+.+
T Consensus 31 ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhh
Confidence 689999999999999998874
No 451
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.11 E-value=0.043 Score=52.47 Aligned_cols=22 Identities=32% Similarity=0.665 Sum_probs=20.0
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+|+|+|++|+|||||++.+.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7999999999999999988853
No 452
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.10 E-value=0.045 Score=53.54 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=22.5
Q ss_pred EeCCcEEEEECCCcchHHHHHHHHhcC
Q 007122 482 VPAGKSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 482 I~~G~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+++..-+.|.||+|+||||+++.++..
T Consensus 36 ~~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 36 AKVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 344566899999999999999999864
No 453
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.10 E-value=0.022 Score=53.42 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=5.0
Q ss_pred cEEEEECCCcchHHHHHHHHhcC
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
=+|+++|++|+|||||++.+++-
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999988764
No 454
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.04 E-value=0.047 Score=55.65 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=24.4
Q ss_pred EEeCCcEEEEECCCcchHHHHHHHHhc
Q 007122 481 VVPAGKSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 481 ~I~~G~~vaIVG~SGsGKSTL~~LL~g 507 (617)
-+++|+.+.|.|++|||||||+.-++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999999987764
No 455
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.00 E-value=0.045 Score=52.10 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=20.7
Q ss_pred CcEEEEECCCcchHHHHHHHHhcC
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
.=+++|+|++|+|||||++.+.+-
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 347999999999999999988753
No 456
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.92 E-value=0.039 Score=57.30 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=29.8
Q ss_pred EeCCcEEEEECCCcchHHHHHHHHhcCCCCC-CCeEEECC
Q 007122 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-SGSIRIDG 520 (617)
Q Consensus 482 I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~-~G~I~idG 520 (617)
+++|+.+.|.|++|+|||||+.-++.-.... ...++++.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 8899999999999999999997766443222 33456665
No 457
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.89 E-value=0.015 Score=57.42 Aligned_cols=29 Identities=28% Similarity=0.583 Sum_probs=23.0
Q ss_pred eeeEEEeCCcEEEEECCCcchHHHHHHHHhc
Q 007122 477 GVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 477 ~isl~I~~G~~vaIVG~SGsGKSTL~~LL~g 507 (617)
++....++| +.|.||+|+||||+++.+++
T Consensus 38 ~~~~~~~~~--vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 38 NLGAKIPKG--VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp HHSCCCCSC--CCCBCSSCSSHHHHHHHHHH
T ss_pred HCCCCCCce--EEEECCCCCcHHHHHHHHHH
Confidence 334444455 88999999999999999986
No 458
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.87 E-value=0.043 Score=59.59 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=25.3
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCCCC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDT 511 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~~p 511 (617)
+.|-.+.++|.|||||||+.++|+.-+..
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 56788999999999999999999876653
No 459
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=92.83 E-value=0.058 Score=54.04 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=23.4
Q ss_pred CcEEEEECCCcchHHHHHHHHhcCCCCCCC
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSG 514 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G 514 (617)
+-++++||.+|+|||||++.|.|-.....|
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~ 149 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTG 149 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecC
Confidence 447999999999999999999986643333
No 460
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=92.69 E-value=0.046 Score=57.04 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=23.3
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
++..+++||.+|+|||||++.|+|-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 5788999999999999999999986
No 461
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.55 E-value=0.05 Score=51.33 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.8
Q ss_pred cEEEEECCCcchHHHHHHHHhc
Q 007122 486 KSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~g 507 (617)
=+++++|++|+|||||++.+.+
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3799999999999999998874
No 462
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.37 E-value=0.066 Score=50.96 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.6
Q ss_pred EEEEECCCcchHHHHHHHHhcCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
.+.|.||.||||+|.++.|+.-|
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998765
No 463
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.33 E-value=0.068 Score=50.85 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=20.5
Q ss_pred EEEEECCCcchHHHHHHHHhcCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
.+.|+||+|+||||+++.++..+
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999987543
No 464
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.30 E-value=0.071 Score=50.69 Aligned_cols=26 Identities=23% Similarity=0.505 Sum_probs=23.0
Q ss_pred CcEEEEECCCcchHHHHHHHHhcCCC
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFRSFD 510 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~gl~~ 510 (617)
|+.|+|=|.-||||||++++|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999987553
No 465
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.28 E-value=0.062 Score=59.44 Aligned_cols=37 Identities=27% Similarity=0.406 Sum_probs=27.9
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCCCCCCC---eEEECC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG---SIRIDG 520 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G---~I~idG 520 (617)
++|..|.|+|.+||||||+++.|...+. ..| .+.+|+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~-~~G~~~~~~lD~ 433 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN-QQGGRSVSLLLG 433 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH-HHCSSCEEEEEH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc-ccCCceEEEECc
Confidence 4567899999999999999999987543 223 355654
No 466
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=92.26 E-value=0.047 Score=56.98 Aligned_cols=25 Identities=36% Similarity=0.648 Sum_probs=23.4
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
++..+++||.+|+|||||++.|+|-
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 6789999999999999999999985
No 467
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.12 E-value=0.07 Score=59.34 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=23.1
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+|..|.|+|.+||||||+++.|...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 47789999999999999999998654
No 468
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=92.03 E-value=0.062 Score=57.33 Aligned_cols=22 Identities=45% Similarity=0.557 Sum_probs=20.7
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+|+|||++|+|||||++.|+|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999874
No 469
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=92.02 E-value=0.1 Score=55.75 Aligned_cols=22 Identities=41% Similarity=0.632 Sum_probs=20.1
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+|+|||++++|||||++-|.|-
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~ 24 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKK 24 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999875
No 470
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=91.94 E-value=0.054 Score=56.05 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.3
Q ss_pred EEEEECCCcchHHHHHHHHhcCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+|+|||++|+|||||++.|+|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
No 471
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=91.91 E-value=0.044 Score=52.21 Aligned_cols=28 Identities=29% Similarity=0.577 Sum_probs=22.2
Q ss_pred EEEEECCCcchHHHHHHH-HhcC----CCCCCC
Q 007122 487 SVAIVGTSGSGKSTILRL-LFRS----FDTHSG 514 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~L-L~gl----~~p~~G 514 (617)
+++++|++|+|||||++. +.|- +.|+.|
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~ 49 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG 49 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHHTCEEETTTT
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc
Confidence 689999999999999997 5443 456666
No 472
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=91.14 E-value=0.03 Score=52.60 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=20.3
Q ss_pred CCcEEEEECCCcchHHHHHHHHhc
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~g 507 (617)
+.=+++++|++|+|||||++.+.+
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 345799999999999999977764
No 473
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=91.85 E-value=0.085 Score=53.66 Aligned_cols=28 Identities=25% Similarity=0.216 Sum_probs=25.3
Q ss_pred EEEeCCcEEEEECCCcchHHHHHHHHhc
Q 007122 480 FVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 480 l~I~~G~~vaIVG~SGsGKSTL~~LL~g 507 (617)
--+++|..+.|.||+|+|||||+..++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3688999999999999999999998874
No 474
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=91.83 E-value=0.082 Score=50.67 Aligned_cols=28 Identities=18% Similarity=0.519 Sum_probs=18.9
Q ss_pred EEEEECCCcchHHHHHHHHh-cC----CCCCCC
Q 007122 487 SVAIVGTSGSGKSTILRLLF-RS----FDTHSG 514 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~-gl----~~p~~G 514 (617)
+|+|||.+|+|||||++-+. +- |.|+-|
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig 47 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 47 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC--------
T ss_pred EEEEECcCCcCHHHHHHHHHhCCCCCCcCCccc
Confidence 79999999999999998665 33 456656
No 475
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.83 E-value=0.068 Score=56.92 Aligned_cols=35 Identities=29% Similarity=0.429 Sum_probs=28.3
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEE
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI 518 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~i 518 (617)
++..++++|++|+||||++.-|+..+....-+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 56799999999999999999888777655445544
No 476
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=91.81 E-value=0.042 Score=59.45 Aligned_cols=39 Identities=38% Similarity=0.452 Sum_probs=30.0
Q ss_pred CcEEEEECCCcchHHHHHHHHhcCC------------CCCCCeEEECCEeC
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFRSF------------DTHSGSIRIDGQDI 523 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~gl~------------~p~~G~I~idG~~i 523 (617)
|=+|+|||++|+|||||++.|++-- ++..+.+.++|.++
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~ 293 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILF 293 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEE
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEE
Confidence 4579999999999999999998752 23456777777643
No 477
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=91.79 E-value=0.054 Score=58.24 Aligned_cols=45 Identities=29% Similarity=0.423 Sum_probs=31.8
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcC----CCCCCC--------eEEECCEeCCCCCH
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRS----FDTHSG--------SIRIDGQDICEVTL 528 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl----~~p~~G--------~I~idG~~i~~~~~ 528 (617)
.|=+|+|||++|+|||||++.|++- ..+..| .+.++|.++.=++.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT 279 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDT 279 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC-
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEEC
Confidence 3456999999999999999999874 222223 46778876654443
No 478
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.78 E-value=0.075 Score=53.42 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=21.4
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
++..+.|.||+|+||||+++.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999998776543
No 479
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.78 E-value=0.067 Score=50.77 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=25.5
Q ss_pred EeCCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 482 VPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 482 I~~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+|+...+.|.||.|+||||++..|+..+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 7777789999999999999999999875
No 480
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=91.75 E-value=0.081 Score=50.47 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=19.6
Q ss_pred EEEEECCCcchHHHHHHHHhc
Q 007122 487 SVAIVGTSGSGKSTILRLLFR 507 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~g 507 (617)
-|+|+|..||||||+.+.|..
T Consensus 11 ~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 481
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.68 E-value=0.02 Score=61.06 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=28.5
Q ss_pred cEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEe
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD 522 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~ 522 (617)
..++++|++|+||||++.-|++.+......|.+-..|
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 5899999999999999999998776444455543333
No 482
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=91.63 E-value=0.078 Score=55.86 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.0
Q ss_pred EEEEECCCcchHHHHHHHHhcCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
+++|||.+++|||||++.|.|--
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999853
No 483
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.54 E-value=0.087 Score=53.76 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=24.2
Q ss_pred EeCCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 482 VPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 482 I~~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
.+|..-+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3566789999999999999999999754
No 484
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.51 E-value=0.078 Score=54.75 Aligned_cols=40 Identities=28% Similarity=0.459 Sum_probs=31.2
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCCCCCCCeEEECCEe
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD 522 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~I~idG~~ 522 (617)
.+|..+.|.||+|+||||+++.++........-+.+++..
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 4577899999999999999999998776444455555443
No 485
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=91.49 E-value=0.021 Score=53.44 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.0
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
+|+++|++|+|||||++.|++-
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988864
No 486
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.48 E-value=0.036 Score=56.80 Aligned_cols=37 Identities=14% Similarity=0.296 Sum_probs=27.8
Q ss_pred ccceeeeEEEeCC--cEEEEECCCcchHHHHHHHHhcCC
Q 007122 473 KILDGVSFVVPAG--KSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 473 ~vL~~isl~I~~G--~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
.+++.+.-.+..| ..+.|.||+|+||||+++.+++.+
T Consensus 44 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 44 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455554445555 449999999999999999998764
No 487
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=91.45 E-value=0.094 Score=54.71 Aligned_cols=38 Identities=42% Similarity=0.463 Sum_probs=31.0
Q ss_pred EEEEECCCcchHHHHHHHHhcCC-----------CCCCCeEEECCEeCC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRSF-----------DTHSGSIRIDGQDIC 524 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl~-----------~p~~G~I~idG~~i~ 524 (617)
.|||||.+-+|||||++.|.|-- +|..|.+.++|..+.
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~ 122 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQ 122 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEE
Confidence 79999999999999999999854 355577888876543
No 488
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=91.43 E-value=0.1 Score=53.71 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=33.7
Q ss_pred eeeeEEEeCCcEEEEECCCcchHHHHHHHHhcCC-----------CCCCCeEEECC
Q 007122 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF-----------DTHSGSIRIDG 520 (617)
Q Consensus 476 ~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~gl~-----------~p~~G~I~idG 520 (617)
..+.++++---.|+|||.+++|||||++.|.+-- +|+-|.+.+++
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~ 204 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD 204 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC
Confidence 4566666666689999999999999999998642 34556666654
No 489
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=91.43 E-value=0.08 Score=54.88 Aligned_cols=26 Identities=27% Similarity=0.542 Sum_probs=22.3
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
++..+.|.||+|+||||+++.|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34567899999999999999999765
No 490
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.42 E-value=0.099 Score=50.59 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=21.1
Q ss_pred cEEEEECCCcchHHHHHHHHhcCC
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
-..||.|+.||||||+.+.|+.-|
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999997654
No 491
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=91.39 E-value=0.097 Score=49.54 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.6
Q ss_pred CcEEEEECCCcchHHHHHHHHhcCC
Q 007122 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 485 G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
.-.|+|.|+.||||||+.+.|+..+
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999997533
No 492
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.31 E-value=0.069 Score=49.80 Aligned_cols=25 Identities=36% Similarity=0.360 Sum_probs=20.9
Q ss_pred CCcEEEEECCCcchHHHHH-HHHhcC
Q 007122 484 AGKSVAIVGTSGSGKSTIL-RLLFRS 508 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~-~LL~gl 508 (617)
+|+.+.++|+.||||||++ +++.++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5889999999999999997 565443
No 493
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.11 E-value=0.097 Score=51.74 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=22.5
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
++...+.|.||+|+||||+++.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45668999999999999999998763
No 494
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.02 E-value=0.1 Score=48.87 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.5
Q ss_pred EEEEECCCcchHHHHHHHHhcC
Q 007122 487 SVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~gl 508 (617)
.+.|.||+|+||||+++.++..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988753
No 495
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.00 E-value=0.059 Score=47.85 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=23.6
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcCCC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl~~ 510 (617)
+.+.-+.|.|++|+|||++++.+.....
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 3456689999999999999999987654
No 496
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=90.95 E-value=0.15 Score=50.00 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=27.7
Q ss_pred CCcEEEEECCCcchHHHHHHHHhcCCCCCCCe-EEEC
Q 007122 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGS-IRID 519 (617)
Q Consensus 484 ~G~~vaIVG~SGsGKSTL~~LL~gl~~p~~G~-I~id 519 (617)
.+.-+.|.|++|+|||++++.+........+. +.+|
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~ 64 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEE
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEe
Confidence 45678999999999999999999876544333 4444
No 497
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=90.90 E-value=0.1 Score=59.05 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=24.3
Q ss_pred EeCCcEEEEECCCcchHHHHHHHHhcCC
Q 007122 482 VPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (617)
Q Consensus 482 I~~G~~vaIVG~SGsGKSTL~~LL~gl~ 509 (617)
.+++-+|+|||++|+|||||++.|+|--
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456789999999999999999999853
No 498
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=90.81 E-value=0.058 Score=61.96 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=25.5
Q ss_pred EeCCcEEEEECCCcchHHHHHHHHhcCCCCC
Q 007122 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFDTH 512 (617)
Q Consensus 482 I~~G~~vaIVG~SGsGKSTL~~LL~gl~~p~ 512 (617)
+..|+.+.|+|||||||||++.++++...+.
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~ 136 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMP 136 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHCG
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhccc
Confidence 5679999999999999999888887654443
No 499
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=90.74 E-value=0.12 Score=55.22 Aligned_cols=44 Identities=16% Similarity=0.267 Sum_probs=30.5
Q ss_pred cEEEEECCCcchHHHHHHHHhcCCC----CC--------CCeEEECCEeCCCCCHH
Q 007122 486 KSVAIVGTSGSGKSTILRLLFRSFD----TH--------SGSIRIDGQDICEVTLE 529 (617)
Q Consensus 486 ~~vaIVG~SGsGKSTL~~LL~gl~~----p~--------~G~I~idG~~i~~~~~~ 529 (617)
-++++||++|+|||||++.|+|-.. +. .+.+.++|..+.=+|..
T Consensus 176 ~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~ 231 (436)
T 2hjg_A 176 IQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTA 231 (436)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHH
T ss_pred cEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECC
Confidence 3899999999999999999997532 22 23456677655444443
No 500
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=90.66 E-value=0.12 Score=52.53 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=22.8
Q ss_pred eCCcEEEEECCCcchHHHHHHHHhcC
Q 007122 483 PAGKSVAIVGTSGSGKSTILRLLFRS 508 (617)
Q Consensus 483 ~~G~~vaIVG~SGsGKSTL~~LL~gl 508 (617)
.+..-+.|.||+|+|||+|++.++..
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45677999999999999999999864
Done!