BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007123
(617 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 30 RDVPSDITIDVNGGTFALHKFPLVSRSGRIRKLVAEHRDSDISRIELLNLPGGAETFELA 89
RD+ +D+ I V+ F HK L++ SG + + ++S I L+ E F +
Sbjct: 26 RDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVIN-LDPEINPEGFNIL 84
Query: 90 AKFCYGINFEITSANVAQLCCVSDYLEM 117
F Y + N+ + + YL+M
Sbjct: 85 LDFMYTSRLNLREGNIMAVMATAMYLQM 112
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 30 RDVPSDITIDVNGGTFALHKFPLVSRSGRIRKLVAEHRDSDISRIELLNLPGGAETFELA 89
RD+ +D+ I V+ F HK L++ SG + + ++S I L+ E F +
Sbjct: 29 RDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVIN-LDPEINPEGFCIL 87
Query: 90 AKFCYGINFEITSANVAQLCCVSDYLEM 117
F Y + N+ + + YL+M
Sbjct: 88 LDFMYTSRLNLREGNIMAVMATAMYLQM 115
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 35 DITIDVNGGTFALHKFPLVSRSGRIRKLVAEHRDSDISRIELLNLPGGAETFELAAKFCY 94
D T V+G F HK L + S + L + + D+ +++ N G + E F Y
Sbjct: 27 DCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQK--DVVHLDISNAAGLGQVLE----FMY 80
Query: 95 GINFEITSANVAQLCCVSDYLEMTE 119
++ NV + V+ +L+M +
Sbjct: 81 TAKLSLSPENVDDVLAVATFLQMQD 105
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
Length = 124
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 30 RDVPSDITIDVNGGTFALHKFPLVSRSGRIRKLVAEHRDSDISRIELLNLPG--GAETFE 87
+DV D+TI V G F H+ L + S + D +++ + LP + FE
Sbjct: 26 KDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGELN----ITLPEEVTVKGFE 81
Query: 88 LAAKFCYGINFEITSANVAQLCCVSDYLEM 117
+F Y ++ NV ++C ++L +
Sbjct: 82 PLIQFAYTAKLILSKENVDEVCKCVEFLSV 111
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 30 RDVPSDITIDVNGGTFALHKFPLVSRSGRIRKLVAEHRDSDISRIELLNLPG--GAETFE 87
+DV D+T+ V G F H+ L + S + D++++ + LP + FE
Sbjct: 33 KDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAELT----VTLPEEVTVKGFE 88
Query: 88 LAAKFCYGINFEITSANVAQLCCVSDYLEM 117
+F Y ++ NV ++C ++L +
Sbjct: 89 PLIQFAYTAKLILSKDNVDEVCRCVEFLSV 118
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 35 DITIDVNGGTFALHKFPLVSRSGRIRKLVAEHRDSDISRIELLNLPGGAETFELAAKFCY 94
D T V+G F HK L + S + L + + D+ +++ N G + E F Y
Sbjct: 29 DCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQK--DVVHLDISNAAGLGQVLE----FMY 82
Query: 95 GINFEITSANVAQLCCVSDYLEMTE 119
++ NV + V+ +L+M +
Sbjct: 83 TAKLSLSPENVDDVLAVATFLQMQD 107
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 230 CRGVRPESIGASLMNYAQK-ELTKKSSLWNPTTQAKVDLVSVPSGHERQ---VVETIIGL 285
CR + P S+ A Y K E+ K + NP T AK ++S+P+ + Q V +TI+G
Sbjct: 38 CRQIAP-SLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNVYQGGEVAKTIVGA 96
Query: 286 LP 287
P
Sbjct: 97 KP 98
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 29.3 bits (64), Expect = 6.3, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 258 NPTTQAKVDLVSVPS---GHERQVVETIIGLLPVEKLA 292
NP+T AK +++S+P+ + Q V+ ++G P E LA
Sbjct: 63 NPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLA 100
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 29.3 bits (64), Expect = 6.4, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 258 NPTTQAKVDLVSVPS---GHERQVVETIIGLLPVEKLA 292
NP+T AK +++S+P+ + Q V+ ++G P E LA
Sbjct: 63 NPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLA 100
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 29.3 bits (64), Expect = 6.4, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 258 NPTTQAKVDLVSVPS---GHERQVVETIIGLLPVEKLA 292
NP+T AK +++S+P+ + Q V+ ++G P E LA
Sbjct: 63 NPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLA 100
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 258 NPTTQAKVDLVSVPS---GHERQVVETIIGLLPVEKLA 292
NP+T AK +++S+P+ + Q V+ ++G P E LA
Sbjct: 62 NPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLA 99
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 258 NPTTQAKVDLVSVPS---GHERQVVETIIGLLPVEKLA 292
NP+T AK +++S+P+ + Q V+ ++G P E LA
Sbjct: 62 NPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLA 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,046,481
Number of Sequences: 62578
Number of extensions: 541173
Number of successful extensions: 1177
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1177
Number of HSP's gapped (non-prelim): 15
length of query: 617
length of database: 14,973,337
effective HSP length: 105
effective length of query: 512
effective length of database: 8,402,647
effective search space: 4302155264
effective search space used: 4302155264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)