BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007126
(617 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q68CZ6|HAUS3_HUMAN HAUS augmin-like complex subunit 3 OS=Homo sapiens GN=HAUS3 PE=1
SV=1
Length = 603
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 124/554 (22%), Positives = 237/554 (42%), Gaps = 59/554 (10%)
Query: 3 GARLCALLCELGYGGADSLDPDSFEWPFQYDDARPILDWICSSLRPSNVLSLSELSQFEQ 62
G L ++GY AD+L+ + F+W F+ + L W C ++ NVLS EL F
Sbjct: 4 GNEFVETLKKIGYPKADNLNGEDFDWLFEGVEDESFLKWFCGNVNEQNVLSERELEAF-S 62
Query: 63 FLQE--EKLLEGEDLESAFDSISAF---SSRRDDQEAVFGSEEGLKDIREATQAYRDEAA 117
LQ+ + +LEG L+ A + + R DD+E E L+D E + +
Sbjct: 63 ILQKSGKPILEGAALDEALKTCKTSDLKTPRLDDKEL-----EKLED--EVQTLLKLKNL 115
Query: 118 QLQRQLRHLQCQF-DMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVL 176
++QR+ + CQ +T+H S + + AT + IL+ ++ + ++ +
Sbjct: 116 KIQRRNK---CQLMASVTSHKSLRLNAKEEE--ATKKLKQSQGILNAMITKISNELQALT 170
Query: 177 GRIASTAQELAHYH--SGDEDGIYLAYSDFHPYLLGDSSSMKELNQWFSKQLDSGPFRLV 234
+ H + G ++L+ YL + S L + KQ G +V
Sbjct: 171 DEVTQLMMFFRHSNLGQGTNPLVFLSQFSLEKYLSQEEQSTAALTLYTKKQFFQGIHEVV 230
Query: 235 AEEGKSKCSWV-----SLGDESNILVRADLEKSHHQRVSELQRLRSVFGTSERQWVEAQV 289
+ + S+ D IL +R E+ RL+ + ++ Q + +
Sbjct: 231 ESSNEDNFQLLDIQTPSICDNQEIL---------EERRLEMARLQLAYICAQHQLIHLKA 281
Query: 290 ENAKQQAILMTLKSQVASDEAYIH------LDFHSLKRKHVELVGELSNLHHKEEKLLSE 343
N+ ++KS + E +H +D +L K L E+ L + ++
Sbjct: 282 SNS-------SMKSSIKWAEESLHSLTSKAVDKENLDAKISSLTSEIMKLEKEVTQIKDR 334
Query: 344 TIPDLCWELAQLQDTYILQGDYDLKVMRQELYISRQKAFINHLINQLARHQFLRLACHLE 403
++P + E AQL + +++GD+DL++ +Q+ Y +RQ+ +N LI Q A + L+L+ +E
Sbjct: 335 SLPAVVRENAQLLNMPVVKGDFDLQIAKQDYYTARQELVLNQLIKQKASFELLQLSYEIE 394
Query: 404 KRNMLAAYSLLKVIESELQGYLSATKSRVGRCLALIEAAS---DVQEQGAVDDRDTFLHG 460
R Y L+ + E LS + + + L ++ S + + +D +D H
Sbjct: 395 LRKHRDIYRQLENLVQE----LSQSNMMLYKQLEMLTDPSVSQQINPRNTIDTKDYSTHR 450
Query: 461 VRDLLSIHSNAQAGLSTYVSAPGIVQQIS---GLRADLTALQSDLENSLPGDRNRCINEL 517
+ +L + + T+ + + +++ L D A+ + + RN+ ++ L
Sbjct: 451 LYQVLEGENKKKELFLTHGNLEEVAEKLKQNISLVQDQLAVSAQEHSFFLSKRNKDVDML 510
Query: 518 C-TLIQSLQQLLFA 530
C TL Q QLL +
Sbjct: 511 CDTLYQGGNQLLLS 524
>sp|Q6DCY9|HAUS3_XENLA HAUS augmin-like complex subunit 3 OS=Xenopus laevis GN=haus3 PE=2
SV=1
Length = 597
Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 146/634 (23%), Positives = 272/634 (42%), Gaps = 66/634 (10%)
Query: 1 MSGA-RLCALLCELGYGGADSLDPDSFEWPFQYDDARPILDWICSSLRPSNVLSLSELSQ 59
MSG R L +L Y LD + F+W F+ D +P LDW CS+ NV+ +L
Sbjct: 1 MSGGDRFVQTLQKLNYPKGAQLDGEDFDWLFEAVDLKPFLDWFCSAASEQNVVPDEKLQA 60
Query: 60 FEQFLQEEK-LLEGEDLESAFDSISAFSSRRDDQEAVFGSEEGLKDIREATQAYRDEAAQ 118
F + K +L+ + L+ + S ++ A+ EE +K A Q
Sbjct: 61 FNTLKESGKPVLDEKALDEVLKTFSISKVPAIEEVAIEKLEEEVK------------ALQ 108
Query: 119 LQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGR 178
Q+ L H++ + + + +++ T +L L N ++N L
Sbjct: 109 KQKNL-HIRRRNKLQMVESGNRQMCLKSKDKEEETGRAFQEVLH-LLRVTNKKLNHELQS 166
Query: 179 IASTAQELAHYHSGDEDG-------IYLAYSDFHPYLLGDSSSMKELNQWFSKQLDSGPF 231
I + Q L + S E I+L+ YL + S L + + G
Sbjct: 167 IVNGVQTLMSFFSTPETACELSSQPIFLSQLLLDKYLSLEEQSTAALTSFTKEHFFEGMS 226
Query: 232 RLVAEEGKSKCSWVSLGDESNILVRADL-----EKSHHQRVSELQRLRSVFGTSERQWVE 286
+ V EG DE+ LV+ ++ + + + E+ RL+ + ++ + ++
Sbjct: 227 KFV--EG---------SDENFQLVQLNVNSFGEDGTTEDKCKEMMRLQLAYICAKHKLIQ 275
Query: 287 AQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVE-----LVGELSNLHHKEEKLL 341
+ ++A + L Q A + A + D S K ++++ L E + + +
Sbjct: 276 MKAKSASLKVGL-----QWAENNASVVQDKASQKEENLKVRITSLKNETLQIENHTNSIS 330
Query: 342 SETIPDLCWELAQLQDTYILQGDYDLKVMRQELYISRQKAFINHLINQLARHQFLRLACH 401
+E +P L + AQL + I++GDYDL++ Q SRQ +HL+ Q A + L+L
Sbjct: 331 NEKLPGLVRDNAQLLNMPIVKGDYDLQMAHQTSCSSRQDLVCDHLMKQKASFELLQLGYE 390
Query: 402 LEKRNMLAAYSLLKVIESELQGYLSATKSRVGRCLALIEAASDVQEQGAVDDRDTFLHGV 461
LE R Y L I EL+ + R+ L+ + S + + +D +D H +
Sbjct: 391 LELRKHRDVYRELGSIVQELKESGDKLEERL-TMLSDVNLLSASKPRSNIDSKDLTSHRL 449
Query: 462 RDLLSIHSNAQAGLSTYVSAPGIVQQISGLRADLTALQSDLENSLPGDRNRCINELCTLI 521
LL N Q TY + Q++S D+ +++ LE S + + +++L + +
Sbjct: 450 YQLLD-GDNTQKLFRTYDGLESVAQKLS---QDIASMRDQLEVS-EQEHSLLLSKLDSHL 504
Query: 522 QSLQQLLFASSTTAQPILTPRPLMKEL----DEMEKINAKLSVAVEEVTLEHCKKNEIIK 577
+ L+ ++ T +LT L E ++EK+N + VE + K+ +
Sbjct: 505 KELRDFMYPEGNTL--MLTTPELSGEFHQLGSQLEKLN---HITVEILGDLQLKRKMLES 559
Query: 578 HHSQEVGLQRRVFVDFFCNPERLRSQVRELTARV 611
+ Q++ +++++V FF N E+L+S V +L A+
Sbjct: 560 NKLQQI--EKQLYVYFFQNEEQLKSIVGKLEAQT 591
>sp|Q8QZX2|HAUS3_MOUSE HAUS augmin-like complex subunit 3 OS=Mus musculus GN=Haus3 PE=2
SV=1
Length = 570
Score = 82.8 bits (203), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 107/513 (20%), Positives = 222/513 (43%), Gaps = 40/513 (7%)
Query: 3 GARLCALLCELGYGGADSLDPDSFEWPFQYDDARPILDWICSSLRPSNVLSLSELSQFEQ 62
G L ++GY AD L+ + F+W F+ + L W C ++ NVLS EL F
Sbjct: 4 GNEFVETLKKIGYPKADILNGEDFDWLFEDVEDESFLKWFCGNVNEQNVLSEKELEAFSD 63
Query: 63 FLQEEK-LLEGEDLESAFDSISAF---SSRRDDQEAVFGSEEGLKDIREATQAYRDEAAQ 118
+ K +LEG L+ + F + + DD+E +E ++ +++ + +
Sbjct: 64 LQRSGKPILEGTALDEVLRTCKTFDLKTCKLDDKEIQILEDE-VQTLQKLNNSKIQRRNK 122
Query: 119 LQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGR 178
Q + +F L A + + + ++VN LS GL+ ++N+++
Sbjct: 123 YQLMVSETSYRFLALNAKQEEATKKLKQKQGFLNSVNTKLSNELQGLTE---EVNNLMIF 179
Query: 179 IASTAQELAHYHSGDEDGIYLAYSDFHPYLLGDSSSMKELNQWFSKQLDSGPFRLVAEEG 238
+ ++ ++L+ Y+ + S L + KQ G +V
Sbjct: 180 FRN-----SNLSERTNPMVFLSQFPLGKYISQEEQSTAALTLYTKKQFFQGMHEVVESSN 234
Query: 239 KSKCSWVSLGDESNILVRADLEKSHHQRVSELQRLRSVFGTSERQWVEAQVENAKQQAIL 298
+ + + S D E+ +R E+ RL+ ++Q + + N
Sbjct: 235 EDNFQLLDIQTPS----ICDNEEILRERRLEMARLQMACICVQKQIIYLKTSN------- 283
Query: 299 MTLKSQVASDEAYIH------LDFHSLKRKHVELVGELSNLHHKEEKLLSETIPDLCWEL 352
+++KS + E ++ +D +L + L E+ L + + + +P + E
Sbjct: 284 LSMKSSIKWAEENLNRLTNEVIDKENLDAEISSLNSEILKLEEQITHIKDKVLPAVVKEY 343
Query: 353 AQLQDTYILQGDYDLKVMRQELYISRQKAFINHLINQLARHQFLRLACHLEKRNMLAAYS 412
AQL + +++GD++L++ +Q+ Y +RQ+ +N LI Q A + ++L+ +E R Y
Sbjct: 344 AQLLNMPVVKGDFELQIAKQDYYTARQELVLNELIKQKASFELVQLSYEIELRKHWDTY- 402
Query: 413 LLKVIESELQGYLSATKSRVGRCLAL---IEAASDVQEQGAVDDRDTFLHGVRDLLSIHS 469
+ +ES +Q LS + + + LA+ I A+ + + +D +D H + +LL
Sbjct: 403 --RQLESLVQQ-LSQRNTVLCQHLAVLSDIPASEQLTSRTPIDTKDHSTHRLYELLE-GD 458
Query: 470 NAQAGLSTYVSAPGIVQQISGLRADLTALQSDL 502
N + L +++ + + L+ D++ +Q L
Sbjct: 459 NKKKEL--FITHEHLEEVAEKLKQDVSVIQDQL 489
>sp|Q7MYZ0|PNP_PHOLL Polyribonucleotide nucleotidyltransferase OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=pnp PE=3
SV=1
Length = 709
Score = 37.0 bits (84), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 12/94 (12%)
Query: 233 LVAEEGKSKCSWVSLGDESNILVRADLEKSHHQRVSEL--QRLRSVFGTSERQWVEAQVE 290
L AE GK K +WV ES + ++ H RV+ L RL + +E+Q AQV+
Sbjct: 222 LAAEAGKEKWNWVP---ES-------VNQALHDRVAGLAEDRLGDAYRITEKQERYAQVD 271
Query: 291 NAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHV 324
K++ L+ A +EA IH SL++K V
Sbjct: 272 AIKEEVTAALLEQDEALEEAEIHEILGSLEKKVV 305
>sp|B2UNE3|GSA_AKKM8 Glutamate-1-semialdehyde 2,1-aminomutase OS=Akkermansia muciniphila
(strain ATCC BAA-835) GN=hemL PE=3 SV=1
Length = 426
Score = 35.8 bits (81), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 15/131 (11%)
Query: 454 RDTFLHGVR------DLLSIHSNAQAGLSTYVSAPGIVQQISGLRADLTALQSDLENSLP 507
++ FLH +R D L I G APG VQQ+ G+ DLT + + LP
Sbjct: 216 QNDFLHFLREITLRHDTLLIFDEVMTGFRV---APGGVQQLYGITPDLTCMGKVIGGGLP 272
Query: 508 GDRNRCINELCTLIQSLQQLLFASSTTAQPILTPRPLMKELDEMEKINA-----KLSVAV 562
+E+ + L + A + + P+ L +L E+ K NA +L +
Sbjct: 273 VGAFGGRSEIMDCLSPLGPVYQAGTLSGNPVAMAAGL-AQLRELLKGNAYERLEQLGARM 331
Query: 563 EEVTLEHCKKN 573
EE E KK+
Sbjct: 332 EEGIREALKKH 342
>sp|Q04DS4|GLMU_OENOB Bifunctional protein GlmU OS=Oenococcus oeni (strain ATCC BAA-331 /
PSU-1) GN=glmU PE=3 SV=1
Length = 426
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 11/110 (10%)
Query: 24 DSFEWPFQYDDARPILDWICSSLR---PSNVLSL----SELSQF--EQFLQEEKLLEGED 74
D P P+L+WIC ++R P N++++ + S + E +Q+E+L +
Sbjct: 19 DDLSKPLHKVAGLPMLEWICRAVRKFNPKNIIAVQGADEDFSSYVDETVVQKEQLGSADA 78
Query: 75 LESAFDSISAFSSRRDDQEAVFGSEEGLKDIREATQAYRDEAAQLQRQLR 124
L AF I A + + +E L D+ E + + +AA L L+
Sbjct: 79 LRCAFPKIDAEKLIVINADMPLMTENDLVDLVEKGEGF--DAALLTADLK 126
>sp|Q54FB7|XDH_DICDI Xanthine dehydrogenase OS=Dictyostelium discoideum GN=xdh PE=3 SV=1
Length = 1358
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 14/101 (13%)
Query: 414 LKVIESELQGYLSATKSRVGRCLALIEAASDVQEQGAVDDRDTFLHGVRDLLSIHSNAQA 473
+++ + G L + G + IE ++ D LH +++ +S +S +Q
Sbjct: 79 FRIVHRAVNGCLYPLCALDGMAVTTIEGLGNI---------DKGLHSIQERISENSGSQC 129
Query: 474 GLSTYVSAPGIVQQISG-LRADLTALQSDLENSLPGDRNRC 513
G T PGI+ + LR++ + Q D+E + G+ RC
Sbjct: 130 GFCT----PGIIMALYAFLRSNPNSTQKDIEQNFDGNLCRC 166
>sp|Q4A172|SYS_STAS1 Serine--tRNA ligase OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=serS
PE=3 SV=1
Length = 427
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 114 DEAAQLQRQLRHLQCQFDMLTAH----ASTLMQGRRAR------VAATSTVNGHLSILDD 163
DE +L Q R L Q + + A + + Q +R + +AA + + +LDD
Sbjct: 29 DEVLELDEQRRQLISQAEEMKAERNKVSGEIAQKKRNKEDADDAIAAMRNLGDEIKVLDD 88
Query: 164 GLSARNLQMNDVLGRIASTAQELAHYHSGDEDGI 197
L+ ++ +ND L RI + + + DED I
Sbjct: 89 TLNQVDVDLNDKLSRIPNIIHDDVPEGATDEDNI 122
>sp|Q3JCY9|RECO_NITOC DNA repair protein RecO OS=Nitrosococcus oceani (strain ATCC 19707
/ NCIMB 11848) GN=recO PE=3 SV=1
Length = 246
Score = 34.7 bits (78), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 198 YLAYSDFHPYLLGDSSSMKELNQWFSKQLDSGPFRLVAEE 237
YL Y Y G S + E QW+S QL+ GP RL++E+
Sbjct: 141 YLGYGLILKYEAGTSRPI-EAGQWYSYQLEKGPVRLLSED 179
>sp|P41121|PNP_PHOLU Polyribonucleotide nucleotidyltransferase OS=Photorhabdus
luminescens GN=pnp PE=1 SV=1
Length = 709
Score = 34.7 bits (78), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 233 LVAEEGKSKCSWVSLGDESNILVRADLEKSHHQRVSEL--QRLRSVFGTSERQWVEAQVE 290
L AE GK K WV + ++ H RV+EL RL + +E+Q AQV+
Sbjct: 222 LAAEAGKEKWDWVP----------EPVNQALHDRVAELAESRLGDAYRITEKQERYAQVD 271
Query: 291 NAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHV 324
K + L+ +EA IH SL++ V
Sbjct: 272 AIKDEVTAALLEQDETLEEAEIHEILGSLEKNVV 305
>sp|P22290|PVDR_PLAVS Duffy receptor OS=Plasmodium vivax (strain Salvador I) GN=PVDR PE=1
SV=2
Length = 1070
Score = 32.7 bits (73), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 244 WVSLGDESNILVRADLEKSHHQRVSELQRLRSVFGTSE------RQW---VEAQVENAKQ 294
W SLGD +I++ D+E + +V E LRS+FGT E +QW +AQ+ A
Sbjct: 305 W-SLGDFGDIIMGTDMEGIGYSKVVE-NNLRSIFGTDEKAQQRRKQWWNESKAQIWTAMM 362
Query: 295 QAILMTLKSQ 304
++ LK
Sbjct: 363 YSVKKRLKGN 372
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 209,623,183
Number of Sequences: 539616
Number of extensions: 8400423
Number of successful extensions: 28825
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 117
Number of HSP's that attempted gapping in prelim test: 28696
Number of HSP's gapped (non-prelim): 268
length of query: 617
length of database: 191,569,459
effective HSP length: 124
effective length of query: 493
effective length of database: 124,657,075
effective search space: 61455937975
effective search space used: 61455937975
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)