Query 007126
Match_columns 617
No_of_seqs 84 out of 86
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 19:17:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007126.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007126hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14932 HAUS-augmin3: HAUS au 100.0 4.8E-56 1E-60 454.3 23.4 250 28-292 1-256 (256)
2 PRK11637 AmiB activator; Provi 93.9 10 0.00023 42.1 22.1 62 99-160 46-107 (428)
3 PF00038 Filament: Intermediat 90.2 24 0.00051 37.2 18.3 81 106-186 53-136 (312)
4 PF14932 HAUS-augmin3: HAUS au 89.4 3.4 7.3E-05 43.0 11.0 131 26-186 12-151 (256)
5 KOG4674 Uncharacterized conser 85.7 1.3E+02 0.0029 39.6 32.5 156 267-428 911-1076(1822)
6 PRK11637 AmiB activator; Provi 84.2 75 0.0016 35.4 18.7 22 318-339 223-244 (428)
7 PF12128 DUF3584: Protein of u 81.2 1.7E+02 0.0036 37.3 31.8 42 394-435 840-881 (1201)
8 PF07888 CALCOCO1: Calcium bin 78.8 1.4E+02 0.003 34.8 20.2 26 413-438 435-460 (546)
9 PF13870 DUF4201: Domain of un 76.9 26 0.00056 34.2 10.6 108 262-385 57-164 (177)
10 PF15397 DUF4618: Domain of un 72.9 1E+02 0.0022 32.6 14.2 81 257-343 138-222 (258)
11 cd07637 BAR_ACAP3 The Bin/Amph 70.6 39 0.00084 34.2 10.3 55 171-229 58-113 (200)
12 cd07603 BAR_ACAPs The Bin/Amph 67.8 44 0.00095 33.7 10.0 55 171-229 58-113 (200)
13 cd07638 BAR_ACAP2 The Bin/Amph 67.7 44 0.00096 33.9 10.0 54 168-230 55-114 (200)
14 cd07602 BAR_RhoGAP_OPHN1-like 66.9 52 0.0011 33.6 10.3 20 172-191 65-84 (207)
15 KOG4674 Uncharacterized conser 62.7 5E+02 0.011 34.6 34.6 31 99-129 688-718 (1822)
16 KOG0804 Cytoplasmic Zn-finger 58.7 73 0.0016 36.1 10.3 82 112-193 373-454 (493)
17 cd07606 BAR_SFC_plant The Bin/ 58.3 82 0.0018 31.9 10.0 17 175-191 64-80 (202)
18 KOG0964 Structural maintenance 58.3 3.6E+02 0.0079 33.7 16.4 29 55-83 208-240 (1200)
19 PF04111 APG6: Autophagy prote 57.0 81 0.0017 34.0 10.3 43 99-141 49-91 (314)
20 COG3883 Uncharacterized protei 56.4 2.7E+02 0.0059 29.6 15.7 79 108-195 39-117 (265)
21 cd07601 BAR_APPL The Bin/Amphi 55.2 1.5E+02 0.0033 30.4 11.4 52 169-229 60-117 (215)
22 PRK10869 recombination and rep 54.2 2.9E+02 0.0062 32.2 14.8 97 263-369 301-397 (553)
23 KOG0161 Myosin class II heavy 53.1 7.3E+02 0.016 33.5 34.2 18 595-612 1421-1438(1930)
24 PF04111 APG6: Autophagy prote 53.1 1.5E+02 0.0033 31.9 11.5 43 99-141 42-84 (314)
25 PF04201 TPD52: Tumour protein 50.8 1.3E+02 0.0029 29.6 9.6 40 97-136 26-65 (162)
26 COG0497 RecN ATPase involved i 48.8 5.1E+02 0.011 30.4 16.3 83 263-349 302-384 (557)
27 PF12718 Tropomyosin_1: Tropom 48.1 2.5E+02 0.0054 26.9 10.9 43 99-141 20-62 (143)
28 PF12325 TMF_TATA_bd: TATA ele 46.8 2E+02 0.0044 26.9 9.8 75 101-179 17-91 (120)
29 KOG0995 Centromere-associated 46.8 5.5E+02 0.012 30.2 24.3 39 5-47 129-172 (581)
30 COG4372 Uncharacterized protei 46.0 2E+02 0.0043 32.2 10.9 74 93-170 71-144 (499)
31 COG4942 Membrane-bound metallo 44.3 5.2E+02 0.011 29.3 19.9 45 100-144 38-82 (420)
32 PF04849 HAP1_N: HAP1 N-termin 43.8 4.6E+02 0.0099 28.5 18.6 268 14-344 16-306 (306)
33 KOG0612 Rho-associated, coiled 43.6 8.3E+02 0.018 31.4 33.2 85 99-187 464-549 (1317)
34 PF14662 CCDC155: Coiled-coil 43.5 2.1E+02 0.0045 29.0 9.9 78 102-187 31-108 (193)
35 PF08232 Striatin: Striatin fa 42.3 1.3E+02 0.0029 28.4 8.0 57 382-438 5-61 (134)
36 PF08317 Spc7: Spc7 kinetochor 41.8 1.6E+02 0.0035 31.7 9.7 41 101-141 210-250 (325)
37 cd07639 BAR_ACAP1 The Bin/Amph 41.3 2.7E+02 0.0059 28.3 10.5 120 169-304 56-182 (200)
38 PRK10884 SH3 domain-containing 40.5 2.6E+02 0.0057 28.4 10.4 22 108-129 94-115 (206)
39 PF04912 Dynamitin: Dynamitin 40.1 3E+02 0.0065 30.3 11.7 115 481-615 263-388 (388)
40 PRK14127 cell division protein 38.5 1.4E+02 0.0031 27.5 7.3 49 88-139 21-69 (109)
41 PF14662 CCDC155: Coiled-coil 37.3 3.7E+02 0.008 27.3 10.5 80 108-187 44-129 (193)
42 PF09730 BicD: Microtubule-ass 36.7 8.5E+02 0.018 29.6 31.3 59 266-335 263-321 (717)
43 PF09727 CortBP2: Cortactin-bi 35.9 4.8E+02 0.01 26.5 11.9 93 342-434 56-152 (192)
44 PF07798 DUF1640: Protein of u 33.8 4.4E+02 0.0096 25.8 10.6 17 2-18 3-19 (177)
45 PF09304 Cortex-I_coil: Cortex 33.6 2.4E+02 0.0053 26.0 7.9 55 104-158 20-74 (107)
46 PF07851 TMPIT: TMPIT-like pro 33.3 3.6E+02 0.0079 29.5 10.6 30 411-442 216-245 (330)
47 COG3074 Uncharacterized protei 33.0 1.8E+02 0.0039 25.0 6.4 49 101-149 26-74 (79)
48 PF13851 GAS: Growth-arrest sp 32.7 3.5E+02 0.0076 27.3 9.8 21 162-182 138-158 (201)
49 COG1579 Zn-ribbon protein, pos 32.5 4.8E+02 0.01 27.3 10.9 49 92-140 30-78 (239)
50 cd07627 BAR_Vps5p The Bin/Amph 32.2 1.6E+02 0.0034 29.8 7.3 100 102-219 6-108 (216)
51 PF03634 TCP: TCP family trans 30.5 22 0.00048 33.4 0.8 26 3-32 29-54 (138)
52 cd07636 BAR_GRAF The Bin/Amphi 29.7 6.3E+02 0.014 25.9 11.6 110 174-304 67-189 (207)
53 PF04740 LXG: LXG domain of WX 29.3 3.2E+02 0.007 26.8 8.9 27 101-127 99-126 (204)
54 KOG1962 B-cell receptor-associ 29.2 1.7E+02 0.0037 30.2 6.9 51 100-150 151-201 (216)
55 PRK15422 septal ring assembly 29.0 4E+02 0.0086 23.4 9.0 35 108-142 5-39 (79)
56 PF12128 DUF3584: Protein of u 28.7 1.3E+03 0.029 29.4 34.2 24 482-505 819-842 (1201)
57 KOG0971 Microtubule-associated 28.6 2.4E+02 0.0053 34.8 8.8 44 102-145 398-441 (1243)
58 PRK10884 SH3 domain-containing 28.2 4.2E+02 0.0092 27.0 9.6 25 100-124 93-117 (206)
59 PF03962 Mnd1: Mnd1 family; I 27.5 6.3E+02 0.014 25.2 10.7 110 98-233 60-176 (188)
60 PF08317 Spc7: Spc7 kinetochor 27.4 8E+02 0.017 26.4 22.4 32 317-352 78-109 (325)
61 COG4026 Uncharacterized protei 27.3 3.9E+02 0.0084 27.9 8.9 75 104-196 132-206 (290)
62 COG1382 GimC Prefoldin, chaper 26.5 1.9E+02 0.0041 27.2 6.1 38 100-137 70-107 (119)
63 PRK09039 hypothetical protein; 26.4 5.1E+02 0.011 28.3 10.4 41 101-141 117-157 (343)
64 PF07106 TBPIP: Tat binding pr 26.3 3.4E+02 0.0074 26.2 8.3 56 282-346 86-141 (169)
65 PF05557 MAD: Mitotic checkpoi 25.7 5.2E+02 0.011 31.0 11.3 124 482-614 499-625 (722)
66 cd08776 DED_Caspase-like_repea 25.6 1E+02 0.0022 26.3 3.9 50 35-86 16-65 (71)
67 PF15619 Lebercilin: Ciliary p 25.5 7.1E+02 0.015 25.1 10.7 87 101-187 20-109 (194)
68 PF03801 Ndc80_HEC: HEC/Ndc80p 25.4 20 0.00044 34.7 -0.4 38 5-46 96-139 (157)
69 PF05103 DivIVA: DivIVA protei 25.2 43 0.00093 30.5 1.7 50 89-141 17-66 (131)
70 PF11559 ADIP: Afadin- and alp 24.2 6.1E+02 0.013 23.9 10.3 16 8-23 9-24 (151)
71 TIGR03752 conj_TIGR03752 integ 23.9 7.1E+02 0.015 28.7 11.1 42 101-142 60-101 (472)
72 PF06120 Phage_HK97_TLTM: Tail 23.1 5.7E+02 0.012 27.7 9.8 35 102-136 76-110 (301)
73 PF09006 Surfac_D-trimer: Lung 22.9 71 0.0015 25.1 2.2 19 598-616 2-20 (46)
74 KOG4360 Uncharacterized coiled 22.7 1.1E+03 0.023 27.7 12.0 36 317-352 162-197 (596)
75 PF15619 Lebercilin: Ciliary p 22.5 8E+02 0.017 24.7 13.0 135 322-520 13-147 (194)
76 TIGR00293 prefoldin, archaeal 22.4 5.3E+02 0.011 23.4 8.4 38 104-141 3-40 (126)
77 PF00038 Filament: Intermediat 22.4 9.1E+02 0.02 25.3 25.0 9 396-404 291-299 (312)
78 cd07664 BAR_SNX2 The Bin/Amphi 22.2 2.6E+02 0.0057 28.9 6.9 102 101-219 23-126 (234)
79 PF07106 TBPIP: Tat binding pr 22.1 3.2E+02 0.007 26.3 7.2 38 98-135 70-107 (169)
80 KOG4010 Coiled-coil protein TP 21.6 8.2E+02 0.018 24.9 9.8 37 98-134 42-78 (208)
81 smart00787 Spc7 Spc7 kinetocho 21.5 6.7E+02 0.014 27.2 10.0 98 100-201 204-303 (312)
82 PRK09039 hypothetical protein; 21.4 3.6E+02 0.0078 29.4 8.1 65 268-343 123-187 (343)
83 PF11559 ADIP: Afadin- and alp 21.0 7E+02 0.015 23.5 11.1 40 101-140 53-92 (151)
84 PHA02562 46 endonuclease subun 20.6 6.5E+02 0.014 28.6 10.4 88 98-186 304-391 (562)
85 TIGR00606 rad50 rad50. This fa 20.4 1.9E+03 0.042 28.3 35.0 53 171-224 650-706 (1311)
86 PF08614 ATG16: Autophagy prot 20.3 5.4E+02 0.012 25.5 8.6 96 73-172 81-177 (194)
87 COG3883 Uncharacterized protei 20.3 5.1E+02 0.011 27.6 8.6 32 110-141 34-65 (265)
88 KOG1655 Protein involved in va 20.2 7.8E+02 0.017 25.3 9.3 87 316-422 28-117 (218)
No 1
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=100.00 E-value=4.8e-56 Score=454.34 Aligned_cols=250 Identities=31% Similarity=0.418 Sum_probs=225.3
Q ss_pred ccCCCCCchhHHHHHhccCCCCCCCCHHHHhHHHHHHhcccCCChhhHHHHHhhcccccCCCCchhhhccchhhhhHHHH
Q 007126 28 WPFQYDDARPILDWICSSLRPSNVLSLSELSQFEQFLQEEKLLEGEDLESAFDSISAFSSRRDDQEAVFGSEEGLKDIRE 107 (617)
Q Consensus 28 Wlf~~~e~~~FL~Wfc~nV~~~NVLS~~EL~~f~~L~~sGkiLeg~~Ld~aL~~i~~~~~~~~~~ed~~~~ee~lE~l~~ 107 (617)
|||++|+++|||+|||+||+++||||++|+++|++|+++||||+|+|||+||++|++++.+..++++ .
T Consensus 1 Wlf~~~e~~~FL~W~c~~V~~~NvLS~~El~~~~~L~~~GkiLeg~~Ld~aL~~~~~~~~~~~~~~e------------~ 68 (256)
T PF14932_consen 1 WLFDDEEFESFLDWFCSNVNESNVLSEEELQAFEELQKSGKILEGEALDEALKTISAFSPKLLELEE------------E 68 (256)
T ss_pred CCCCCccHHHHHHHHHccCChhccCCHHHHHHHHHHHHcCCcCCHHHHHHHHHHcccccCCccccch------------H
Confidence 9999999999999999999999999999999999999999999999999999999986666555543 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHHhhhhhhhhhhhhhhhhhHHhHHhHHHHHHHHHHHHHHh
Q 007126 108 ATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRIASTAQELA 187 (617)
Q Consensus 108 ~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~~~~~~~~L~~~~~~L~~~n~k~n~~L~~l~~~v~~L~ 187 (617)
++++|+++++.++++++..++++|+|+.+++.+.+....+....+++++.+++....+.+.+.++|++++.+++.|.+++
T Consensus 69 ~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~~l~ 148 (256)
T PF14932_consen 69 DLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQLLGEVSKLA 148 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888999999999999999999999999999999999888888999999999988888877777777777777777665
Q ss_pred hh----ccC--CCCcccccccCChhhhhhcchhHHHHHHHHHhhccCCcccccccccCccccccccCCccccccccchhh
Q 007126 188 HY----HSG--DEDGIYLAYSDFHPYLLGDSSSMKELNQWFSKQLDSGPFRLVAEEGKSKCSWVSLGDESNILVRADLEK 261 (617)
Q Consensus 188 ~~----~s~--~~~gvflsq~~le~Yl~qee~~t~~Lt~y~kKqF~~G~~~lv~~e~~s~~~~~qL~D~~~~l~~~~~e~ 261 (617)
.+ +++ ++||+|||||||++|+++|++||+|||+|||||||+|++++| |+++.++|+ +.|+++|.++|+.++
T Consensus 149 ~~~~~~~~~~~~~~~~flsq~~l~~Y~~~ee~~t~~L~~y~kKqF~~g~~~~~--e~s~~~~~~-lld~~~~~~~~d~~e 225 (256)
T PF14932_consen 149 SELAHAHSGQQQNPPVFLSQMPLEQYLSQEEQFTKYLTSYTKKQFFQGISELV--ESSNEDNFQ-LLDISNPSIRGDEEE 225 (256)
T ss_pred HHHHHhcccccCCCCchhhhCCHHHHHHHHHHHHHHHHHHHHHhcccccchhh--ccccchhhH-HhhccccccccchHH
Confidence 54 454 678899999999999999999999999999999999999999 676667666 788999999988777
Q ss_pred hHHhhHHHHHHhHhhHhhhHHHHHHHHHHHH
Q 007126 262 SHHQRVSELQRLRSVFGTSERQWVEAQVENA 292 (617)
Q Consensus 262 ~~e~r~~EL~RLq~~y~~aq~q~I~a~ae~~ 292 (617)
.+++|+.||+|||++|+||+||||.|+|+++
T Consensus 226 ~~~~~~~EL~rLq~~~~~aq~q~I~~ka~~~ 256 (256)
T PF14932_consen 226 VLEERRSELARLQSAYICAQHQLIQAKAEVA 256 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888999999999999999999999863
No 2
>PRK11637 AmiB activator; Provisional
Probab=93.94 E-value=10 Score=42.09 Aligned_cols=62 Identities=19% Similarity=0.175 Sum_probs=38.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHHhhhhhhhhhhh
Q 007126 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSI 160 (617)
Q Consensus 99 ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~~~~~~~~L~~ 160 (617)
.+.+++++..+..++.++..+++.+.....+++.++.....+..............+..+..
T Consensus 46 ~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~ 107 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDE 107 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777777777777777777777777776666655554433333334444444444
No 3
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=90.20 E-value=24 Score=37.20 Aligned_cols=81 Identities=15% Similarity=0.220 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHHhhhhhhhhhhhh---hhhhhHHhHHhHHHHHHHHHH
Q 007126 106 REATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSIL---DDGLSARNLQMNDVLGRIAST 182 (617)
Q Consensus 106 ~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~~~~~~~~L~~~---~~~L~~~n~k~n~~L~~l~~~ 182 (617)
+.++..++..+.++...+..+..+++++...+..+.............+...+... -+........+.+.++.|-+.
T Consensus 53 e~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eE 132 (312)
T PF00038_consen 53 EEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEE 132 (312)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHH
Confidence 34455555566666666666666666655555444322222222222222222221 122444444555555555554
Q ss_pred HHHH
Q 007126 183 AQEL 186 (617)
Q Consensus 183 v~~L 186 (617)
..-+
T Consensus 133 l~fl 136 (312)
T PF00038_consen 133 LEFL 136 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 4
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=89.39 E-value=3.4 Score=43.05 Aligned_cols=131 Identities=22% Similarity=0.292 Sum_probs=70.3
Q ss_pred CcccCCCCC-----chhHHHHHhccCCCCCCCCHHHHh-HHHHHHhcc-cC--CChhhHHHHHhhcccccCCCCchhhhc
Q 007126 26 FEWPFQYDD-----ARPILDWICSSLRPSNVLSLSELS-QFEQFLQEE-KL--LEGEDLESAFDSISAFSSRRDDQEAVF 96 (617)
Q Consensus 26 fdWlf~~~e-----~~~FL~Wfc~nV~~~NVLS~~EL~-~f~~L~~sG-ki--Leg~~Ld~aL~~i~~~~~~~~~~ed~~ 96 (617)
|+|+|.+.. +..=+.=|-.=+...+||+.++|. ++.+..... +. +++ .+.++.
T Consensus 12 L~W~c~~V~~~NvLS~~El~~~~~L~~~GkiLeg~~Ld~aL~~~~~~~~~~~~~~e-----------------~~le~L- 73 (256)
T PF14932_consen 12 LDWFCSNVNESNVLSEEELQAFEELQKSGKILEGEALDEALKTISAFSPKLLELEE-----------------EDLEAL- 73 (256)
T ss_pred HHHHHccCChhccCCHHHHHHHHHHHHcCCcCCHHHHHHHHHHcccccCCccccch-----------------HHHHHH-
Confidence 677775433 222233333334566799999998 444444321 12 221 223322
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHHhhhhhhhhhhhhhhhhhHHhHHhHHHH
Q 007126 97 GSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVL 176 (617)
Q Consensus 97 ~~ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~~~~~~~~L~~~~~~L~~~n~k~n~~L 176 (617)
+++++.+++..+.++..+..++...+.+.+....|+... .... ...+.......+.++..|..+|.++
T Consensus 74 --e~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~--------~~~~--~~l~~~~~~l~~~~~k~~~~l~~l~ 141 (256)
T PF14932_consen 74 --EEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKE--------EEAQ--KKLKKAQKELSAECSKLNNELNQLL 141 (256)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------HHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666677666666666665555532 1111 1111112223446788888888888
Q ss_pred HHHHHHHHHH
Q 007126 177 GRIASTAQEL 186 (617)
Q Consensus 177 ~~l~~~v~~L 186 (617)
+.+++.+..+
T Consensus 142 ~~v~~l~~~~ 151 (256)
T PF14932_consen 142 GEVSKLASEL 151 (256)
T ss_pred HHHHHHHHHH
Confidence 7777776543
No 5
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=85.71 E-value=1.3e+02 Score=39.56 Aligned_cols=156 Identities=19% Similarity=0.154 Sum_probs=75.9
Q ss_pred HHHHHHhHhhHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhhhhHhhHHHHHHhHHHHHHHhhccc--
Q 007126 267 VSELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLSET-- 344 (617)
Q Consensus 267 ~~EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~D~~~L~~~i~~l~~el~~Le~~i~~l~~~~-- 344 (617)
..+..+|+--+.-|..+.-+-++.+.++..+|..+++...-...-+..++++++.++.++..++..|+.++..+..+-
T Consensus 911 ~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~ 990 (1822)
T KOG4674|consen 911 LEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELEL 990 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345666666666677776666777777776666666554322222223345555566666666666666555554221
Q ss_pred --------chHHHHHHhcccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007126 345 --------IPDLCWELAQLQDTYILQGDYDLKVMRQELYISRQKAFINHLINQLARHQFLRLACHLEKRNMLAAYSLLKV 416 (617)
Q Consensus 345 --------lp~l~~e~AqL~~~pIl~GD~dLqiaRQdyy~srQ~~v~n~Li~Q~ar~elL~la~e~E~r~~~~~~~lL~~ 416 (617)
+-.+++++ ++|+.++-=-..+-.=+-..=..+-+.|-.+.-...=.+==|+-|+-.|.++-..|..
T Consensus 991 ~~k~~e~~~~~~~~e~------~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~k 1064 (1822)
T KOG4674|consen 991 STKGKEDKLLDLSREI------SSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIK 1064 (1822)
T ss_pred cccchhhhHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222 2222222100000000111111123333333333333455677777777777777777
Q ss_pred HHHHHhhhHHHH
Q 007126 417 IESELQGYLSAT 428 (617)
Q Consensus 417 i~~eL~~~~s~~ 428 (617)
+..++-.....+
T Consensus 1065 l~ee~~~~~~e~ 1076 (1822)
T KOG4674|consen 1065 LREEFAKCNDEL 1076 (1822)
T ss_pred HHHHHHHHHHHH
Confidence 666665555444
No 6
>PRK11637 AmiB activator; Provisional
Probab=84.18 E-value=75 Score=35.37 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=9.5
Q ss_pred hhhhhHhhHHHHHHhHHHHHHH
Q 007126 318 SLKRKHVELVGELSNLHHKEEK 339 (617)
Q Consensus 318 ~L~~~i~~l~~el~~Le~~i~~ 339 (617)
.|...+.....++..++.+...
T Consensus 223 ~L~~~~~~~~~~l~~l~~~~~~ 244 (428)
T PRK11637 223 GLESSLQKDQQQLSELRANESR 244 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 7
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=81.15 E-value=1.7e+02 Score=37.28 Aligned_cols=42 Identities=10% Similarity=0.120 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 007126 394 QFLRLACHLEKRNMLAAYSLLKVIESELQGYLSATKSRVGRC 435 (617)
Q Consensus 394 elL~la~e~E~r~~~~~~~lL~~i~~eL~~~~s~~~~r~~~~ 435 (617)
.-+.=.++....++......++....++......+..-+..+
T Consensus 840 ~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~~~l 881 (1201)
T PF12128_consen 840 NQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLRDLLEKL 881 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444444555555555555555555555555555555443
No 8
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=78.81 E-value=1.4e+02 Score=34.85 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhhhh
Q 007126 413 LLKVIESELQGYLSATKSRVGRCLAL 438 (617)
Q Consensus 413 lL~~i~~eL~~~~s~~~~r~~~~~~~ 438 (617)
+|..=.++|-.|.-.+..|+++.++-
T Consensus 435 ql~~EkQeL~~yi~~Le~r~~~~~~~ 460 (546)
T PF07888_consen 435 QLQEEKQELLEYIERLEQRLDKVADE 460 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45555678888888899999987766
No 9
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=76.90 E-value=26 Score=34.23 Aligned_cols=108 Identities=19% Similarity=0.185 Sum_probs=68.7
Q ss_pred hHHhhHHHHHHhHhhHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhhhhHhhHHHHHHhHHHHHHHhh
Q 007126 262 SHHQRVSELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLL 341 (617)
Q Consensus 262 ~~e~r~~EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~D~~~L~~~i~~l~~el~~Le~~i~~l~ 341 (617)
-.+.|..||.+|+..++.+-+.+-+.+-......+-+..++......... ...++..+.....+...++.....+.
T Consensus 57 kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~----~~~~r~~l~~~k~~r~k~~~~~~~l~ 132 (177)
T PF13870_consen 57 KIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEE----LAKLREELYRVKKERDKLRKQNKKLR 132 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556779999999988888777776666666666666666555433211 23555555555555555555555443
Q ss_pred cccchHHHHHHhcccccccccchhhhhhhhHHHHHHHHHHHHHH
Q 007126 342 SETIPDLCWELAQLQDTYILQGDYDLKVMRQELYISRQKAFINH 385 (617)
Q Consensus 342 ~~~lp~l~~e~AqL~~~pIl~GD~dLqiaRQdyy~srQ~~v~n~ 385 (617)
.-.-+.++|-|--||+-.+ ++....++.|.+|
T Consensus 133 ---------~~~~~~~~P~ll~Dy~~~~---~~~~~l~~~i~~l 164 (177)
T PF13870_consen 133 ---------QQGGLLGVPALLRDYDKTK---EEVEELRKEIKEL 164 (177)
T ss_pred ---------HhcCCCCCcHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3356789999999996555 5555555555444
No 10
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=72.94 E-value=1e+02 Score=32.57 Aligned_cols=81 Identities=25% Similarity=0.343 Sum_probs=36.6
Q ss_pred cchhhhHHhhHHHHHHhHhhHhhhHHHHHHHHHHHH--HHH-HHHH-HHHhhhccccccccccchhhhhhHhhHHHHHHh
Q 007126 257 ADLEKSHHQRVSELQRLRSVFGTSERQWVEAQVENA--KQQ-AILM-TLKSQVASDEAYIHLDFHSLKRKHVELVGELSN 332 (617)
Q Consensus 257 ~~~e~~~e~r~~EL~RLq~~y~~aq~q~I~a~ae~~--~~~-a~L~-~l~~~~~~~~~~~~~D~~~L~~~i~~l~~el~~ 332 (617)
++-+.+.+-|..|++.|-...-..+.++..+-|... .++ +.+. ++.++...++ ...-+.-|..+..+|..
T Consensus 138 dEldel~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~ke------i~~~re~i~el~e~I~~ 211 (258)
T PF15397_consen 138 DELDELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKE------IVQFREEIDELEEEIPQ 211 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 333344444444666666555555555544433332 111 2222 2222222221 12223345666666666
Q ss_pred HHHHHHHhhcc
Q 007126 333 LHHKEEKLLSE 343 (617)
Q Consensus 333 Le~~i~~l~~~ 343 (617)
|+.+|+.+...
T Consensus 212 L~~eV~~L~~~ 222 (258)
T PF15397_consen 212 LRAEVEQLQAQ 222 (258)
T ss_pred HHHHHHHHHHh
Confidence 66666666554
No 11
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=70.65 E-value=39 Score=34.16 Aligned_cols=55 Identities=22% Similarity=0.358 Sum_probs=33.1
Q ss_pred HhHHHHHHHHHHHHHHhhhccCC-CCcccccccCChhhhhhcchhHHHHHHHHHhhccCC
Q 007126 171 QMNDVLGRIASTAQELAHYHSGD-EDGIYLAYSDFHPYLLGDSSSMKELNQWFSKQLDSG 229 (617)
Q Consensus 171 k~n~~L~~l~~~v~~L~~~~s~~-~~gvflsq~~le~Yl~qee~~t~~Lt~y~kKqF~~G 229 (617)
-+++.|++++++.+++..|+... .+--.+.--||.+|+..+-.-.+.. ||.|+..
T Consensus 58 ~i~~~L~kF~~~l~ei~~~~~~l~~q~e~~l~~pL~~F~k~dL~~~KE~----rK~Fdk~ 113 (200)
T cd07637 58 MISECLDKFGDSLQEMVNYHMILFDQAQRSVRQQLHSFVKEDVRKFKET----KKQFDKV 113 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHH
Confidence 57788899999999998776411 0001122347777777666554443 3555544
No 12
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=67.79 E-value=44 Score=33.73 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=32.9
Q ss_pred HhHHHHHHHHHHHHHHhhhccCCC-CcccccccCChhhhhhcchhHHHHHHHHHhhccCC
Q 007126 171 QMNDVLGRIASTAQELAHYHSGDE-DGIYLAYSDFHPYLLGDSSSMKELNQWFSKQLDSG 229 (617)
Q Consensus 171 k~n~~L~~l~~~v~~L~~~~s~~~-~gvflsq~~le~Yl~qee~~t~~Lt~y~kKqF~~G 229 (617)
.+...|.+++++.+++..|+...- +---+--.||+.|+..+-.-.+.. ||+|+..
T Consensus 58 ~i~~~l~kF~~~l~el~~~~~~L~~q~~~~i~~pL~~F~k~dL~~vKE~----kk~Fdk~ 113 (200)
T cd07603 58 LVQNCLNKFIQALQEMNNFHTILLDQAQRTVSTQLQNFVKEDIKKVKES----KKHFEKI 113 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----HHHHHHH
Confidence 556888889999999987764110 001122347777777766555543 3555544
No 13
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=67.71 E-value=44 Score=33.86 Aligned_cols=54 Identities=22% Similarity=0.432 Sum_probs=32.7
Q ss_pred HhHHhHHHHHHHHHHHHHHhhhccCCCCccccccc------CChhhhhhcchhHHHHHHHHHhhccCCc
Q 007126 168 RNLQMNDVLGRIASTAQELAHYHSGDEDGIYLAYS------DFHPYLLGDSSSMKELNQWFSKQLDSGP 230 (617)
Q Consensus 168 ~n~k~n~~L~~l~~~v~~L~~~~s~~~~gvflsq~------~le~Yl~qee~~t~~Lt~y~kKqF~~G~ 230 (617)
...-+...|++++++.+++..|+. +++.|+ ||.+|...+-.-.+. .||+|+...
T Consensus 55 ~De~i~~~l~kF~~~l~ei~~~~~-----~L~~q~~~~l~~~L~~F~k~dl~~vke----~kk~FdK~s 114 (200)
T cd07638 55 KDAVIETSLTKFSDTLQEMINYHT-----ILFDQAQRSIKAQLQTFVKEDLRKFKD----AKKQFDKVS 114 (200)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHh
Confidence 334677899999999999998875 444432 444444433332222 346666553
No 14
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=66.90 E-value=52 Score=33.58 Aligned_cols=20 Identities=5% Similarity=0.145 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHhhhcc
Q 007126 172 MNDVLGRIASTAQELAHYHS 191 (617)
Q Consensus 172 ~n~~L~~l~~~v~~L~~~~s 191 (617)
+...|+++++..+++..|+.
T Consensus 65 i~~~L~kF~~~l~ei~~~r~ 84 (207)
T cd07602 65 IAESLKEFGRLIETVEDERD 84 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999988875
No 15
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=62.75 E-value=5e+02 Score=34.65 Aligned_cols=31 Identities=19% Similarity=0.398 Sum_probs=21.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007126 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQCQ 129 (617)
Q Consensus 99 ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~ 129 (617)
.+.++.|++.++.|+.++.+|..+...++..
T Consensus 688 ~ekle~L~~~ie~~K~e~~tL~er~~~l~~~ 718 (1822)
T KOG4674|consen 688 KEKLENLEKNLELTKEEVETLEERNKNLQST 718 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777888888888777666555443
No 16
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=58.70 E-value=73 Score=36.05 Aligned_cols=82 Identities=11% Similarity=0.182 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHHhhhhhhhhhhhhhhhhhHHhHHhHHHHHHHHHHHHHHhhhcc
Q 007126 112 YRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRIASTAQELAHYHS 191 (617)
Q Consensus 112 Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~~~~~~~~L~~~~~~L~~~n~k~n~~L~~l~~~v~~L~~~~s 191 (617)
++++.+.+++.+..++.++++++............++..-..-.+++++.++.....+......++.|-.-+.+|+.|..
T Consensus 373 ~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le 452 (493)
T KOG0804|consen 373 LEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLE 452 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehh
Confidence 33344444444444444444444444333333344444455555666666667777777777777777777888887765
Q ss_pred CC
Q 007126 192 GD 193 (617)
Q Consensus 192 ~~ 193 (617)
++
T Consensus 453 ~q 454 (493)
T KOG0804|consen 453 AQ 454 (493)
T ss_pred hh
Confidence 43
No 17
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=58.34 E-value=82 Score=31.91 Aligned_cols=17 Identities=24% Similarity=0.546 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhhhcc
Q 007126 175 VLGRIASTAQELAHYHS 191 (617)
Q Consensus 175 ~L~~l~~~v~~L~~~~s 191 (617)
.|.+++.+.+++..|+.
T Consensus 64 ~l~kF~~~l~ei~~~~~ 80 (202)
T cd07606 64 VMTKFTSALREIGSYKE 80 (202)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 79999999999988875
No 18
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=58.28 E-value=3.6e+02 Score=33.68 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=19.0
Q ss_pred HHHhHHHHHHhcccCCCh----hhHHHHHhhcc
Q 007126 55 SELSQFEQFLQEEKLLEG----EDLESAFDSIS 83 (617)
Q Consensus 55 ~EL~~f~~L~~sGkiLeg----~~Ld~aL~~i~ 83 (617)
+||..|..|.+.-+.||= .++.++...+.
T Consensus 208 eeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~ 240 (1200)
T KOG0964|consen 208 EELEKYQKLDKERRSLEYTIYDRELNEINGELE 240 (1200)
T ss_pred HHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHH
Confidence 578899999888776653 34454444433
No 19
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=57.04 E-value=81 Score=34.01 Aligned_cols=43 Identities=19% Similarity=0.321 Sum_probs=25.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 007126 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (617)
Q Consensus 99 ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~ 141 (617)
.++++.++.+.+.+.+++..+++....+..++..|+.....+.
T Consensus 49 ~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 49 EEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666666666555554444
No 20
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.45 E-value=2.7e+02 Score=29.56 Aligned_cols=79 Identities=13% Similarity=0.193 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHHhhhhhhhhhhhhhhhhhHHhHHhHHHHHHHHHHHHHHh
Q 007126 108 ATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRIASTAQELA 187 (617)
Q Consensus 108 ~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~~~~~~~~L~~~~~~L~~~n~k~n~~L~~l~~~v~~L~ 187 (617)
.+..+..+...+|+.+..+..+.+.++.....+.-.-....+......+.++...+.+..++..+..-+- +
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raR---------A 109 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRAR---------A 109 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------H
Confidence 3444455555555555555555554444443333111112233334444444444444444444444333 6
Q ss_pred hhccCCCC
Q 007126 188 HYHSGDED 195 (617)
Q Consensus 188 ~~~s~~~~ 195 (617)
.|.+|...
T Consensus 110 mq~nG~~t 117 (265)
T COG3883 110 MQVNGTAT 117 (265)
T ss_pred HHHcCChh
Confidence 66666555
No 21
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=55.22 E-value=1.5e+02 Score=30.37 Aligned_cols=52 Identities=12% Similarity=0.227 Sum_probs=32.2
Q ss_pred hHHhHHHHHHHHHHHHHHhhhccCCCCcccccc------cCChhhhhhcchhHHHHHHHHHhhccCC
Q 007126 169 NLQMNDVLGRIASTAQELAHYHSGDEDGIYLAY------SDFHPYLLGDSSSMKELNQWFSKQLDSG 229 (617)
Q Consensus 169 n~k~n~~L~~l~~~v~~L~~~~s~~~~gvflsq------~~le~Yl~qee~~t~~Lt~y~kKqF~~G 229 (617)
...+.+.+.+++.+++++..|+. +++.| .||++|+..+-.-.+. .||.|+..
T Consensus 60 De~~~~~l~kFs~~l~El~~~~~-----~L~~q~~~~l~~pL~~F~k~Dl~~vKe----~kK~FdK~ 117 (215)
T cd07601 60 DEILVSTLKQFSKVVDELSTMHS-----TLSSQLADTVLHPISQFMESDLAEIMT----LKELFKAA 117 (215)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHH
Confidence 33444689999999999988876 44333 3666666555443332 34666554
No 22
>PRK10869 recombination and repair protein; Provisional
Probab=54.15 E-value=2.9e+02 Score=32.17 Aligned_cols=97 Identities=16% Similarity=0.182 Sum_probs=48.8
Q ss_pred HHhhHHHHHHhHhhHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhhhhHhhHHHHHHhHHHHHHHhhc
Q 007126 263 HHQRVSELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLS 342 (617)
Q Consensus 263 ~e~r~~EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~D~~~L~~~i~~l~~el~~Le~~i~~l~~ 342 (617)
.+.|...+.+|+.=|+.+--+++.-..+....-..|.-.......- ......+..+...+..+|+..+.+...-+.
T Consensus 301 ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~L----e~e~~~l~~~l~~~A~~LS~~R~~aA~~l~ 376 (553)
T PRK10869 301 LEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETL----ALAVEKHHQQALETAQKLHQSRQRYAKELA 376 (553)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999877666655544333322222111111000 000123444444555555555555554444
Q ss_pred ccchHHHHHHhcccccccccchhhhhh
Q 007126 343 ETIPDLCWELAQLQDTYILQGDYDLKV 369 (617)
Q Consensus 343 ~~lp~l~~e~AqL~~~pIl~GD~dLqi 369 (617)
..|-..+++ ++|| .+.|++.+
T Consensus 377 ~~v~~~L~~----L~m~--~a~f~v~~ 397 (553)
T PRK10869 377 QLITESMHE----LSMP--HGKFTIDV 397 (553)
T ss_pred HHHHHHHHH----cCCC--CcEEEEEE
Confidence 444333333 4555 55555554
No 23
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=53.12 E-value=7.3e+02 Score=33.54 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=10.5
Q ss_pred CCchHHHHHHHHHHHHHh
Q 007126 595 CNPERLRSQVRELTARVR 612 (617)
Q Consensus 595 ~~p~~L~~~V~~Le~~~~ 612 (617)
.|-++.+..++.|+.+.+
T Consensus 1421 ~d~~~~~~~~~~le~k~k 1438 (1930)
T KOG0161|consen 1421 LDLERSRAAVAALEKKQK 1438 (1930)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566666666665544
No 24
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=53.12 E-value=1.5e+02 Score=31.94 Aligned_cols=43 Identities=21% Similarity=0.350 Sum_probs=27.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 007126 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (617)
Q Consensus 99 ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~ 141 (617)
.+.++++.+++++|+.|..++.+.+..+......+......+.
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le 84 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELE 84 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777777776666666655554
No 25
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=50.82 E-value=1.3e+02 Score=29.56 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=33.4
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 007126 97 GSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAH 136 (617)
Q Consensus 97 ~~ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~ 136 (617)
..|++-|.|+.++-+.++||.+|.+-+..+..+...|...
T Consensus 26 LsEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrk 65 (162)
T PF04201_consen 26 LSEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRK 65 (162)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3467889999999999999999999999888876665543
No 26
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=48.75 E-value=5.1e+02 Score=30.44 Aligned_cols=83 Identities=22% Similarity=0.236 Sum_probs=39.7
Q ss_pred HHhhHHHHHHhHhhHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhhhhHhhHHHHHHhHHHHHHHhhc
Q 007126 263 HHQRVSELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLS 342 (617)
Q Consensus 263 ~e~r~~EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~D~~~L~~~i~~l~~el~~Le~~i~~l~~ 342 (617)
++.|+..|.+|.-=|.++=-.++.-..+.. +=|+.|.....+... ...+...+..+.......|+..+++...=+.
T Consensus 302 ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~---~el~~L~~~~~~~~~-Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~ 377 (557)
T COG0497 302 VEERLFALKSLARKYGVTIEDLLEYLDKIK---EELAQLDNSEESLEA-LEKEVKKLKAELLEAAEALSAIRKKAAKELE 377 (557)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HHHHHhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888776555554333322 222222211111100 0111234444445555556666655554444
Q ss_pred ccchHHH
Q 007126 343 ETIPDLC 349 (617)
Q Consensus 343 ~~lp~l~ 349 (617)
..|-..+
T Consensus 378 ~~v~~eL 384 (557)
T COG0497 378 KEVTAEL 384 (557)
T ss_pred HHHHHHH
Confidence 4443333
No 27
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=48.06 E-value=2.5e+02 Score=26.87 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=32.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 007126 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (617)
Q Consensus 99 ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~ 141 (617)
+..+++++......+.+|..|++....+..++++++.......
T Consensus 20 e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 20 EAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777888888888888888888888888777655544
No 28
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=46.80 E-value=2e+02 Score=26.88 Aligned_cols=75 Identities=17% Similarity=0.249 Sum_probs=49.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHHhhhhhhhhhhhhhhhhhHHhHHhHHHHHHH
Q 007126 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRI 179 (617)
Q Consensus 101 ~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~~~~~~~~L~~~~~~L~~~n~k~n~~L~~l 179 (617)
.+|.+...+..++.|+..++.++..+...++.+..-...+.... ....+..+.+......+...+.+-++.|+-+
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~----e~~~~~~~~~~~L~~el~~l~~ry~t~Lell 91 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN----EELRALKKEVEELEQELEELQQRYQTLLELL 91 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788888888889999999999888888888877766665222 2223333444444445555666666555533
No 29
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=46.78 E-value=5.5e+02 Score=30.21 Aligned_cols=39 Identities=21% Similarity=0.431 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCCCCCCC-----CCCCcccCCCCCchhHHHHHhccCC
Q 007126 5 RLCALLCELGYGGADSLD-----PDSFEWPFQYDDARPILDWICSSLR 47 (617)
Q Consensus 5 ~f~e~LkklGyp~a~~L~-----~e~fdWlf~~~e~~~FL~Wfc~nV~ 47 (617)
+.+..||.+|||=...++ +...-| |-+...|.|+.+-++
T Consensus 129 EV~~ilK~L~YPf~~siSs~~a~gspH~W----P~iL~mlhWlvdlI~ 172 (581)
T KOG0995|consen 129 EVVQILKNLKYPFLLSISSLQAAGSPHNW----PHILGMLHWLVDLIR 172 (581)
T ss_pred HHHHHHHhCCCCcccchhhhccCCCCCcc----HHHHHHHHHHHHHHH
Confidence 457889999999775544 112334 568889999986544
No 30
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=46.04 E-value=2e+02 Score=32.22 Aligned_cols=74 Identities=22% Similarity=0.218 Sum_probs=54.2
Q ss_pred hhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHHhhhhhhhhhhhhhhhhhHHhH
Q 007126 93 EAVFGSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNL 170 (617)
Q Consensus 93 ed~~~~ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~~~~~~~~L~~~~~~L~~~n~ 170 (617)
+++| +++||...+++++.|+...+..|......+++...-..+..+.....-....++++++.+++..+.....
T Consensus 71 ~gVf----qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~ 144 (499)
T COG4372 71 SGVF----QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTK 144 (499)
T ss_pred hhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777 8999999999999999999999999999999877766666655444333346666666665554444433
No 31
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=44.34 E-value=5.2e+02 Score=29.29 Aligned_cols=45 Identities=22% Similarity=0.241 Sum_probs=36.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhh
Q 007126 100 EGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGR 144 (617)
Q Consensus 100 e~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~ 144 (617)
..+..++.++++++.++..-+++...++.++..++.-.+.+....
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql 82 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQL 82 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888889999999999999999988888888877766666333
No 32
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=43.82 E-value=4.6e+02 Score=28.49 Aligned_cols=268 Identities=18% Similarity=0.197 Sum_probs=0.0
Q ss_pred CCCCCCC-CCCCCCcccC--CCCCchhHHHHH--hccCCCCCCCCHHHHhHHHHHHhcccCCChhhHHHHHhhcccccCC
Q 007126 14 GYGGADS-LDPDSFEWPF--QYDDARPILDWI--CSSLRPSNVLSLSELSQFEQFLQEEKLLEGEDLESAFDSISAFSSR 88 (617)
Q Consensus 14 Gyp~a~~-L~~e~fdWlf--~~~e~~~FL~Wf--c~nV~~~NVLS~~EL~~f~~L~~sGkiLeg~~Ld~aL~~i~~~~~~ 88 (617)
||+..+- ..+-.-+|.- ..|..+.||++| |++--++--=|-.++.+...|... -+.||..|-+--+.....
T Consensus 16 ~~~~~dw~~p~~~~~~~~~ls~~~~~~~l~y~~Lc~~rv~qmtkty~Didavt~lLeE----kerDLelaA~iGqsLl~~ 91 (306)
T PF04849_consen 16 GYDNQDWLTPAAPPDRRPELSPEQIEETLRYFLLCSDRVSQMTKTYNDIDAVTRLLEE----KERDLELAARIGQSLLEQ 91 (306)
T ss_pred ccccccccCCCCCCCCCCCCCHHHHHHHHHHHHhcccchhhhhcchhhHHHHHHHHHH----HhhhHHHHHHHhHHHHHh
Q ss_pred CCchhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHHhh-----------------
Q 007126 89 RDDQEAVFGSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAAT----------------- 151 (617)
Q Consensus 89 ~~~~ed~~~~ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~~----------------- 151 (617)
+..+ .+..+.+++.+.+-.+.+..|+..++ .++.|-..-+.-....-......
T Consensus 92 N~~L------~~~~~~le~~L~~~~e~v~qLrHeL~----~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (306)
T PF04849_consen 92 NQDL------SERNEALEEQLGAALEQVEQLRHELS----MKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQ 161 (306)
T ss_pred cccH------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhcCcHhhhcccccCCCccccccccccccccchh
Q ss_pred -hhhhhhhhhhhhhhhHHhHHhHHHHHHHHHHHHHHhhhccCCCCcccccccCChhhhhhcchhHHHHHHHHHhhccCCc
Q 007126 152 -STVNGHLSILDDGLSARNLQMNDVLGRIASTAQELAHYHSGDEDGIYLAYSDFHPYLLGDSSSMKELNQWFSKQLDSGP 230 (617)
Q Consensus 152 -~~~~~~L~~~~~~L~~~n~k~n~~L~~l~~~v~~L~~~~s~~~~gvflsq~~le~Yl~qee~~t~~Lt~y~kKqF~~G~ 230 (617)
+...++++. |..+|..+-.+..+|...+ .. -|+.-..-+...+ |||....
T Consensus 162 le~Lq~Klk~----LEeEN~~LR~Ea~~L~~et----------~~--------------~EekEqqLv~dcv-~QL~~An 212 (306)
T PF04849_consen 162 LEALQEKLKS----LEEENEQLRSEASQLKTET----------DT--------------YEEKEQQLVLDCV-KQLSEAN 212 (306)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHhhHHH----------hh--------------ccHHHHHHHHHHH-HHhhhcc
Q ss_pred ccccccccCccccccccCCccccccccchhhhHHhhHHHHHHhHhhHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 007126 231 FRLVAEEGKSKCSWVSLGDESNILVRADLEKSHHQRVSELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEA 310 (617)
Q Consensus 231 ~~lv~~e~~s~~~~~qL~D~~~~l~~~~~e~~~e~r~~EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~ 310 (617)
.+++. |.+--. ...|....++- |+.+|.+=.+-.++..-.--+++..+...|...++.-..-.+
T Consensus 213 ~qia~-----------LseELa----~k~Ee~~rQQE-EIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~a 276 (306)
T PF04849_consen 213 QQIAS-----------LSEELA----RKTEENRRQQE-EITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQA 276 (306)
T ss_pred hhHHH-----------HHHHHH----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred cccccchhhhhhHhhHHHHHHhHHHHHHHhhccc
Q 007126 311 YIHLDFHSLKRKHVELVGELSNLHHKEEKLLSET 344 (617)
Q Consensus 311 ~~~~D~~~L~~~i~~l~~el~~Le~~i~~l~~~~ 344 (617)
=++ .|..|-.++..=+.....++..+.+.+
T Consensus 277 EL~----elqdkY~E~~~mL~EaQEElk~lR~~~ 306 (306)
T PF04849_consen 277 ELQ----ELQDKYAECMAMLHEAQEELKTLRKRT 306 (306)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHhhCCC
No 33
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=43.57 E-value=8.3e+02 Score=31.41 Aligned_cols=85 Identities=22% Similarity=0.246 Sum_probs=56.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhHHHHHHhhhhhHHHHHhhhhhhhhhhhhhhhhhHHhHHhHHHHH
Q 007126 99 EEGLKDIREATQAYRDEAAQLQ-RQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLG 177 (617)
Q Consensus 99 ee~lE~l~~~~e~Le~e~~~lq-k~~~~l~~~~n~L~~~as~l~~~~~~l~~~~~~~~~~L~~~~~~L~~~n~k~n~~L~ 177 (617)
++..+.|++..+.++.+..+++ ++++.++++.+..+.+++......+.+.+.-......| +.+...|..+...+.
T Consensus 464 ~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eel----e~~q~~~~~~~~~~~ 539 (1317)
T KOG0612|consen 464 EEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEEL----EDAQKKNDNAADSLE 539 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 4456677777788888888888 47788888888877776666544443333333333333 346777777777777
Q ss_pred HHHHHHHHHh
Q 007126 178 RIASTAQELA 187 (617)
Q Consensus 178 ~l~~~v~~L~ 187 (617)
++..+-++|-
T Consensus 540 kv~~~rk~le 549 (1317)
T KOG0612|consen 540 KVNSLRKQLE 549 (1317)
T ss_pred hHHHHHHHHH
Confidence 7777766663
No 34
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=43.50 E-value=2.1e+02 Score=29.05 Aligned_cols=78 Identities=19% Similarity=0.241 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHHhhhhhhhhhhhhhhhhhHHhHHhHHHHHHHHH
Q 007126 102 LKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRIAS 181 (617)
Q Consensus 102 lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~~~~~~~~L~~~~~~L~~~n~k~n~~L~~l~~ 181 (617)
++-+++.-.+|..++-+|.++..++++-+....+....+ ++-....+.|++...+|.+.+..++.+.+.|..
T Consensus 31 ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEl--------edLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~ 102 (193)
T PF14662_consen 31 VETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEEL--------EDLKTLAKSLEEENRSLLAQARQLEKEQQSLVA 102 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555555443222222221111 111223334444445666677777777777777
Q ss_pred HHHHHh
Q 007126 182 TAQELA 187 (617)
Q Consensus 182 ~v~~L~ 187 (617)
.+..|.
T Consensus 103 ~i~~Lq 108 (193)
T PF14662_consen 103 EIETLQ 108 (193)
T ss_pred HHHHHH
Confidence 766664
No 35
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=42.26 E-value=1.3e+02 Score=28.42 Aligned_cols=57 Identities=16% Similarity=0.110 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhh
Q 007126 382 FINHLINQLARHQFLRLACHLEKRNMLAAYSLLKVIESELQGYLSATKSRVGRCLAL 438 (617)
Q Consensus 382 v~n~Li~Q~ar~elL~la~e~E~r~~~~~~~lL~~i~~eL~~~~s~~~~r~~~~~~~ 438 (617)
|+++|=.+++||+-=+.+-++|+..|+.--..|+.=...++.-...+..|+.||--.
T Consensus 5 Vl~fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~a 61 (134)
T PF08232_consen 5 VLHFLQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYA 61 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999888888888888999999887655
No 36
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=41.79 E-value=1.6e+02 Score=31.70 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 007126 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (617)
Q Consensus 101 ~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~ 141 (617)
.++.++.++.++..++..+++.+..++.++..++.....+.
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~ 250 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELE 250 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555544444443
No 37
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=41.35 E-value=2.7e+02 Score=28.29 Aligned_cols=120 Identities=13% Similarity=0.148 Sum_probs=56.8
Q ss_pred hHHhHHHHHHHHHHHHHHhhhccCC-CCcccccccCChhhhhhcchhHHHHHHHHHhhccCCcccccccccCcccccccc
Q 007126 169 NLQMNDVLGRIASTAQELAHYHSGD-EDGIYLAYSDFHPYLLGDSSSMKELNQWFSKQLDSGPFRLVAEEGKSKCSWVSL 247 (617)
Q Consensus 169 n~k~n~~L~~l~~~v~~L~~~~s~~-~~gvflsq~~le~Yl~qee~~t~~Lt~y~kKqF~~G~~~lv~~e~~s~~~~~qL 247 (617)
+..+.+.+.++++..+++..|+..- .+--.+---||++|+..+-.-.+. .||+|+....+. .+-
T Consensus 56 D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~~~~l~~~L~~F~k~dl~~vKe----~kK~FdK~s~~~-----------d~a 120 (200)
T cd07639 56 DPMMAECLEKFSDGLNHILDSHAELLEATQFSFKQQLQLLVKEDLRGFRD----ARKEFERGAESL-----------EAA 120 (200)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----HhhhHhhcchhH-----------HHH
Confidence 3347778888888888887665310 000112223555555544433332 347777653321 111
Q ss_pred CCccccccccchhhhHHhhHHHHHHhHhhHhh------hHHHHHHHHHHHHHHHHHHHHHHhh
Q 007126 248 GDESNILVRADLEKSHHQRVSELQRLRSVFGT------SERQWVEAQVENAKQQAILMTLKSQ 304 (617)
Q Consensus 248 ~D~~~~l~~~~~e~~~e~r~~EL~RLq~~y~~------aq~q~I~a~ae~~~~~a~L~~l~~~ 304 (617)
++....+..+....+.+-.. +|..-+..|-. .+++.|+++-...-+++++..+..+
T Consensus 121 l~K~~~~~k~k~~e~~Ea~~-~l~~~R~~F~~~~ldYV~~in~iq~kKkfefle~ll~~m~a~ 182 (200)
T cd07639 121 LQHNAETPRRKAQEVEEAAA-ALLGARATFRDRALDYALQINVIEDKKKFDILEFMLQLMEAQ 182 (200)
T ss_pred HHHHhhccccchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111222222323222 55555555533 3555566666666666666666433
No 38
>PRK10884 SH3 domain-containing protein; Provisional
Probab=40.47 E-value=2.6e+02 Score=28.42 Aligned_cols=22 Identities=9% Similarity=0.237 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 007126 108 ATQAYRDEAAQLQRQLRHLQCQ 129 (617)
Q Consensus 108 ~~e~Le~e~~~lqk~~~~l~~~ 129 (617)
-+.+++.++.+++..++.+..+
T Consensus 94 rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH
Confidence 3445555555555444444433
No 39
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=40.12 E-value=3e+02 Score=30.34 Aligned_cols=115 Identities=17% Similarity=0.321 Sum_probs=67.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhc-CCcchhhhHHHHHHHHHHHHHhhhccCCCCCCccCChhhhHHHHHHHHHH----
Q 007126 481 APGIVQQISGLRADLTALQSDLENS-LPGDRNRCINELCTLIQSLQQLLFASSTTAQPILTPRPLMKELDEMEKIN---- 555 (617)
Q Consensus 481 ~~~L~~~~~~L~~dl~~lq~~L~~~-~~e~~~~~~~~L~~~~~~l~ql~~~~s~~~q~~Lt~~el~~~l~~le~l~---- 555 (617)
..++......|..++..+...-... .......-|++||..+..++.+ .=.=|.+.+-|-.|..++
T Consensus 263 Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~----------~~~lP~lv~RL~tL~~lH~~a~ 332 (388)
T PF04912_consen 263 LDSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPY----------APSLPSLVERLKTLKSLHEEAA 332 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHH----------hhhhhHHHHHHHHHHHHHHHHH
Confidence 3667777777777776655333322 1112234577888877777665 111244444444444443
Q ss_pred ------HHHHHHHHHHHHHHHhHHHhhhcCChhhhhhhhhhhhccCCchHHHHHHHHHHHHHhhhc
Q 007126 556 ------AKLSVAVEEVTLEHCKKNEIIKHHSQEVGLQRRVFVDFFCNPERLRSQVRELTARVRALQ 615 (617)
Q Consensus 556 ------~~L~~~l~dv~~~~~~Kr~~L~~~~~~~~~eR~lyV~Ff~~p~~L~~~V~~Le~~~~a~~ 615 (617)
..|.....++...++.=...|.. +|.. |=.|-..+.+.|+.|+.|+.+||
T Consensus 333 ~~~~~l~~le~~q~~l~~~l~~~~~~L~~------ve~~----~~~N~~~i~~n~~~le~Ri~~L~ 388 (388)
T PF04912_consen 333 EFSQTLSELESQQSDLQSQLKKWEELLNK------VEEK----FKENMETIEKNVKKLEERIAKLQ 388 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH----HHHHHHHHHHHHHHHHHHHhccC
Confidence 34555555555555454455543 2222 77889999999999999999875
No 40
>PRK14127 cell division protein GpsB; Provisional
Probab=38.51 E-value=1.4e+02 Score=27.50 Aligned_cols=49 Identities=33% Similarity=0.399 Sum_probs=38.3
Q ss_pred CCCchhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 007126 88 RRDDQEAVFGSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHAST 139 (617)
Q Consensus 88 ~~~~~ed~~~~ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~ 139 (617)
.+++.++|. +=|..+-.++++|.+++.+|+.+...+..++..++...+.
T Consensus 21 RGYd~~EVD---~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 21 RGYDQDEVD---KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred CCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 467777663 5677777789999999999999999888888887776543
No 41
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=37.26 E-value=3.7e+02 Score=27.31 Aligned_cols=80 Identities=19% Similarity=0.215 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHH---HhhhhhhHHHHHHhhhhhHHHHHhhhhhh---hhhhhhhhhhhHHhHHhHHHHHHHHH
Q 007126 108 ATQAYRDEAAQLQRQLRHL---QCQFDMLTAHASTLMQGRRARVAATSTVN---GHLSILDDGLSARNLQMNDVLGRIAS 181 (617)
Q Consensus 108 ~~e~Le~e~~~lqk~~~~l---~~~~n~L~~~as~l~~~~~~l~~~~~~~~---~~L~~~~~~L~~~n~k~n~~L~~l~~ 181 (617)
+..+|+..+..+|+.++.- ...+..|...+.++....+.+.+...... ..|...=+.|+..|.++......+.+
T Consensus 44 e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~ 123 (193)
T PF14662_consen 44 EITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKK 123 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHH
Confidence 3444444444444333222 33444444455555544444444432211 12222223466667777666666666
Q ss_pred HHHHHh
Q 007126 182 TAQELA 187 (617)
Q Consensus 182 ~v~~L~ 187 (617)
..++|.
T Consensus 124 ~~~eL~ 129 (193)
T PF14662_consen 124 RSKELA 129 (193)
T ss_pred HHHHHH
Confidence 666654
No 42
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=36.72 E-value=8.5e+02 Score=29.56 Aligned_cols=59 Identities=20% Similarity=0.309 Sum_probs=39.3
Q ss_pred hHHHHHHhHhhHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhhhhHhhHHHHHHhHHH
Q 007126 266 RVSELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHH 335 (617)
Q Consensus 266 r~~EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~D~~~L~~~i~~l~~el~~Le~ 335 (617)
...|+..|+ .|+.++..+...+.+.|+..+.+...... .....+.+|..|...+..+..
T Consensus 263 ~~~EiqKL~-------qQL~qve~EK~~L~~~L~e~Q~qLe~a~~----als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 263 NLSEIQKLK-------QQLLQVEREKSSLLSNLQESQKQLEHAQG----ALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred chHHHHHHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhh
Confidence 466888876 78888888888888888888777643321 123445555556555555544
No 43
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=35.91 E-value=4.8e+02 Score=26.46 Aligned_cols=93 Identities=16% Similarity=0.114 Sum_probs=66.7
Q ss_pred cccchHHHHHHhcccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007126 342 SETIPDLCWELAQLQDTYILQGDYDLKVMRQELYISRQKAFINHLINQLA----RHQFLRLACHLEKRNMLAAYSLLKVI 417 (617)
Q Consensus 342 ~~~lp~l~~e~AqL~~~pIl~GD~dLqiaRQdyy~srQ~~v~n~Li~Q~a----r~elL~la~e~E~r~~~~~~~lL~~i 417 (617)
+.++-++-++....-+.+-...-|.-.++-.+-....|+..=..++.|++ ||.-+-.=++-|.|+|......=..+
T Consensus 56 ~dp~~ALqRD~~~~~~~~~~~~v~~~pl~~Le~l~~~qk~~q~Rm~~qL~~aE~rhrr~i~eLe~EKrkh~~~~aqgDD~ 135 (192)
T PF09727_consen 56 NDPFLALQRDSEAAGGEKEEEDVYENPLAELEKLMEHQKKMQRRMLEQLAAAEKRHRRTIQELEEEKRKHAEDMAQGDDF 135 (192)
T ss_pred CcHHHHHHhHHHhcCCCCccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence 34455555555444433334444788888888888888887666666654 77777777888899999888888888
Q ss_pred HHHHhhhHHHHHHHHhh
Q 007126 418 ESELQGYLSATKSRVGR 434 (617)
Q Consensus 418 ~~eL~~~~s~~~~r~~~ 434 (617)
+.-|++.-..+.+-++.
T Consensus 136 t~lLEkEReRLkq~lE~ 152 (192)
T PF09727_consen 136 TNLLEKERERLKQQLEQ 152 (192)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888877777764
No 44
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=33.82 E-value=4.4e+02 Score=25.79 Aligned_cols=17 Identities=12% Similarity=0.204 Sum_probs=13.8
Q ss_pred ChhHHHHHHHhcCCCCC
Q 007126 2 SGARLCALLCELGYGGA 18 (617)
Q Consensus 2 ~g~~f~e~LkklGyp~a 18 (617)
|--.|+..|.+-|||..
T Consensus 3 DT~~~v~~Le~~Gft~~ 19 (177)
T PF07798_consen 3 DTHKFVKRLEAAGFTEE 19 (177)
T ss_pred cHHHHHHHHHHCCCCHH
Confidence 34578999999999986
No 45
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=33.62 E-value=2.4e+02 Score=26.01 Aligned_cols=55 Identities=15% Similarity=0.168 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHHhhhhhhhhh
Q 007126 104 DIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHL 158 (617)
Q Consensus 104 ~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~~~~~~~~L 158 (617)
.|..+++.++....+|.+++.-|....+.|+.+..+..+....+-+...++-+.|
T Consensus 20 ~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 20 SLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444455544555555555555555544444444444444433
No 46
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=33.31 E-value=3.6e+02 Score=29.52 Aligned_cols=30 Identities=23% Similarity=0.133 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhh
Q 007126 411 YSLLKVIESELQGYLSATKSRVGRCLALIEAA 442 (617)
Q Consensus 411 ~~lL~~i~~eL~~~~s~~~~r~~~~~~~sq~~ 442 (617)
+...-.+++-|+.+-+ .+|+-++.++...+
T Consensus 216 f~~~~~~vq~lQ~~YQ--~~~Ly~l~AlG~~~ 245 (330)
T PF07851_consen 216 FSLYQSVVQFLQYRYQ--RGCLYRLRALGKRH 245 (330)
T ss_pred HHHHHHHHHHHHHHHH--HhHHHHHHHhccCc
Confidence 5556677777776554 36777777886544
No 47
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.96 E-value=1.8e+02 Score=24.97 Aligned_cols=49 Identities=16% Similarity=0.246 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHH
Q 007126 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVA 149 (617)
Q Consensus 101 ~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~ 149 (617)
++|.|++.-..|..|+++++.....+..+-+-|+..-+..+.+.|.+++
T Consensus 26 EieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 26 EIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555555555555544444444444444444444443
No 48
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=32.74 E-value=3.5e+02 Score=27.27 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=8.9
Q ss_pred hhhhhHHhHHhHHHHHHHHHH
Q 007126 162 DDGLSARNLQMNDVLGRIAST 182 (617)
Q Consensus 162 ~~~L~~~n~k~n~~L~~l~~~ 182 (617)
+....-.|.=+-.-+..+...
T Consensus 138 qQk~~~kn~lLEkKl~~l~~~ 158 (201)
T PF13851_consen 138 QQKTGLKNLLLEKKLQALSEQ 158 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444
No 49
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=32.51 E-value=4.8e+02 Score=27.33 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=32.9
Q ss_pred hhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 007126 92 QEAVFGSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTL 140 (617)
Q Consensus 92 ~ed~~~~ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l 140 (617)
+++.......++.+.+.+++++.++.++++++..++..+.++.......
T Consensus 30 ~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~ 78 (239)
T COG1579 30 RKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRA 78 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566777777777888888888888777777666665554443
No 50
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=32.20 E-value=1.6e+02 Score=29.80 Aligned_cols=100 Identities=14% Similarity=0.176 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHHhhhhhhhhhhhhhhhhhH--HhHHhHHHHHHH
Q 007126 102 LKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSA--RNLQMNDVLGRI 179 (617)
Q Consensus 102 lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~~~~~~~~L~~~~~~L~~--~n~k~n~~L~~l 179 (617)
.++.+..++.|+.-+..+.+....+..++..|..-...+ ...+.. |+. .+.-++..|.++
T Consensus 6 F~~~k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~ef--------------a~~~~~----L~~~E~~~~l~~~l~~~ 67 (216)
T cd07627 6 FIEKKQYLDSLESQLKQLYKSLELVSSQRKELASATEEF--------------AETLEA----LSSLELSKSLSDLLAAL 67 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHH----HHHhhcchHhHHHHHHH
Confidence 445556677777777777776666666555544333222 222222 222 245666777777
Q ss_pred HHHHHHHhhhccCCCCccccccc-CChhhhhhcchhHHHHH
Q 007126 180 ASTAQELAHYHSGDEDGIYLAYS-DFHPYLLGDSSSMKELN 219 (617)
Q Consensus 180 ~~~v~~L~~~~s~~~~gvflsq~-~le~Yl~qee~~t~~Lt 219 (617)
++...+++..+..+...-++... ||+.|+.-+.+.-..|+
T Consensus 68 a~~~~~~~~~~~~~a~~e~~~l~~~L~ey~r~~~Svk~~~~ 108 (216)
T cd07627 68 AEVQKRIKESLERQALQDVLTLGVTLDEYIRSIGSVRAAFA 108 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776554433322333333 56666655555544444
No 51
>PF03634 TCP: TCP family transcription factor; InterPro: IPR005333 The TCP transcription factor family was named after: teosinte branched 1 (tb1, Zea mays (Maize)) [], cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) [] and PCF in rice (Oryza sativa) [, ]. The TCP proteins code for structurally related proteins implicated in the evolution of key morphological traits []. However, the biochemical function of CYC and TB1 proteins remains to be demonstrated. One of the conserved regions is predicted to form a non-canonical basic-Helix-Loop-Helix (bHLP) structure. This domain is also found in two rice DNA-binding proteins, PCF1 and PCF2, where it has been shown to be involved in DNA-binding and dimerization. This family of transcription factors are exclusive to higher plants. They can be divided into two groups, TCP-C and TCP-P, that appear to have separated following an early gene duplication event []. This duplication event may have led to functional divergence and it has been proposed that that the TCP-P subfamily are transcriptional repressors, while the TPC-C subfamily are transcription activators [].
Probab=30.45 E-value=22 Score=33.40 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=22.8
Q ss_pred hhHHHHHHHhcCCCCCCCCCCCCCcccCCC
Q 007126 3 GARLCALLCELGYGGADSLDPDSFEWPFQY 32 (617)
Q Consensus 3 g~~f~e~LkklGyp~a~~L~~e~fdWlf~~ 32 (617)
..+|+++=..||||++ ..-+||||.-
T Consensus 29 Ar~FFdLQDmLGfDKa----SKTveWLL~k 54 (138)
T PF03634_consen 29 ARKFFDLQDMLGFDKA----SKTVEWLLTK 54 (138)
T ss_pred HHHHHHHHHHhcCCCC----CchHHHHHHh
Confidence 4689999999999999 7889999954
No 52
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=29.74 E-value=6.3e+02 Score=25.89 Aligned_cols=110 Identities=14% Similarity=0.120 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHhhhccCCCCcccccc------cCChhhhhhcchhHHHHHHHHHhhccCCcccccccccCcccccccc
Q 007126 174 DVLGRIASTAQELAHYHSGDEDGIYLAY------SDFHPYLLGDSSSMKELNQWFSKQLDSGPFRLVAEEGKSKCSWVSL 247 (617)
Q Consensus 174 ~~L~~l~~~v~~L~~~~s~~~~gvflsq------~~le~Yl~qee~~t~~Lt~y~kKqF~~G~~~lv~~e~~s~~~~~qL 247 (617)
..|.+++++.+++..|+. .++.| -||+.|....-.-.+. .||+|+....+.- +-
T Consensus 67 ~~L~kF~~~L~ei~~~r~-----~L~~qa~~~l~~~L~~F~kedi~~~Ke----~kK~FdK~se~~~-----------~a 126 (207)
T cd07636 67 RSLQEFAAVLRNLEDERT-----RMIENASEVLITPLEKFRKEQIGAAKE----AKKKYDKETEKYC-----------AV 126 (207)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhHhhhhhHHH-----------HH
Confidence 678888888888877754 22222 3444443332221111 3477776643222 11
Q ss_pred CCcccccc-ccchhhhHHhhHHHHHHhHhhHhh------hHHHHHHHHHHHHHHHHHHHHHHhh
Q 007126 248 GDESNILV-RADLEKSHHQRVSELQRLRSVFGT------SERQWVEAQVENAKQQAILMTLKSQ 304 (617)
Q Consensus 248 ~D~~~~l~-~~~~e~~~e~r~~EL~RLq~~y~~------aq~q~I~a~ae~~~~~a~L~~l~~~ 304 (617)
.+....+. .+....+.|-.. .|..-+..|-. -+++.|+++-.-.-+..+|..+...
T Consensus 127 l~k~~~ls~k~K~~~~eEA~~-~L~~~r~~F~~~sLdYV~qi~~vq~rKkfefle~llsfm~a~ 189 (207)
T cd07636 127 LEKHLNLSSKKKESQLHEADS-QVDLVRQHFYEVSLEYVFKVQEVQERKMFEFVEPLLAFLQGL 189 (207)
T ss_pred HHHHhcCcccCCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111122 122223333322 45555555533 3566666666666666666666433
No 53
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=29.30 E-value=3.2e+02 Score=26.78 Aligned_cols=27 Identities=11% Similarity=0.342 Sum_probs=12.0
Q ss_pred hhh-HHHHHHHHHHHHHHHHHHHHHHHH
Q 007126 101 GLK-DIREATQAYRDEAAQLQRQLRHLQ 127 (617)
Q Consensus 101 ~lE-~l~~~~e~Le~e~~~lqk~~~~l~ 127 (617)
.|+ +++..+..+...+..+....+...
T Consensus 99 ~L~~el~~~l~~~~~~~~~~~~~~~~~~ 126 (204)
T PF04740_consen 99 FLESELKKKLNQLKEQIEDLQDEINSIL 126 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 444 444444444444444444443333
No 54
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=29.18 E-value=1.7e+02 Score=30.18 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=33.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHHh
Q 007126 100 EGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAA 150 (617)
Q Consensus 100 e~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~ 150 (617)
+...++.+++.+|++++...++.+...+.+...|..++..++.....+.++
T Consensus 151 ~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee 201 (216)
T KOG1962|consen 151 EENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEE 201 (216)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 344555566777777777777777777777777777766666554444433
No 55
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=28.97 E-value=4e+02 Score=23.37 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 007126 108 ATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQ 142 (617)
Q Consensus 108 ~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~ 142 (617)
-+++|+.-|+..--+...|+..++.|......+.+
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~ 39 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666667777766777777777776666555553
No 56
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=28.66 E-value=1.3e+03 Score=29.42 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhc
Q 007126 482 PGIVQQISGLRADLTALQSDLENS 505 (617)
Q Consensus 482 ~~L~~~~~~L~~dl~~lq~~L~~~ 505 (617)
+.+....+.+.+.+..++.++...
T Consensus 819 ~~l~~~~~~~~~~~~~l~~~~~~~ 842 (1201)
T PF12128_consen 819 PELEEQLRDLEQELQELEQELNQL 842 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666655433
No 57
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=28.63 E-value=2.4e+02 Score=34.80 Aligned_cols=44 Identities=16% Similarity=0.232 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhH
Q 007126 102 LKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRR 145 (617)
Q Consensus 102 lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~ 145 (617)
.-.+.+++|..+.|+.++.+++..|..+++.+++....+..-..
T Consensus 398 ~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 398 HQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456789999999999999999999999998888777764333
No 58
>PRK10884 SH3 domain-containing protein; Provisional
Probab=28.24 E-value=4.2e+02 Score=26.96 Aligned_cols=25 Identities=8% Similarity=0.259 Sum_probs=15.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q 007126 100 EGLKDIREATQAYRDEAAQLQRQLR 124 (617)
Q Consensus 100 e~lE~l~~~~e~Le~e~~~lqk~~~ 124 (617)
+.+..++.++.++++++..+....+
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWN 117 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3566666677777766666655544
No 59
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=27.45 E-value=6.3e+02 Score=25.20 Aligned_cols=110 Identities=10% Similarity=0.218 Sum_probs=0.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHHhhhhhhhhhhhhhhhhh-------HHhH
Q 007126 98 SEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLS-------ARNL 170 (617)
Q Consensus 98 ~ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~~~~~~~~L~~~~~~L~-------~~n~ 170 (617)
..+....++..++.|.+++..++.....+..++... .....-...+..++...++....++.....+. ....
T Consensus 60 ps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~-~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~ 138 (188)
T PF03962_consen 60 PSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA-KKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIE 138 (188)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Q ss_pred HhHHHHHHHHHHHHHHhhhccCCCCcccccccCChhhhhhcchhHHHHHHHHHhhccCCcccc
Q 007126 171 QMNDVLGRIASTAQELAHYHSGDEDGIYLAYSDFHPYLLGDSSSMKELNQWFSKQLDSGPFRL 233 (617)
Q Consensus 171 k~n~~L~~l~~~v~~L~~~~s~~~~gvflsq~~le~Yl~qee~~t~~Lt~y~kKqF~~G~~~l 233 (617)
++...+..+.+.+.... +. +|+ |..|++++|.-...++
T Consensus 139 ~~~~~~~~~~~~anrwT------DN-I~~------------------l~~~~~~k~~~~~~~i 176 (188)
T PF03962_consen 139 KLKEEIKIAKEAANRWT------DN-IFS------------------LKSYLKKKFGMDEEDI 176 (188)
T ss_pred HHHHHHHHHHHHHHHHH------hh-HHH------------------HHHHHHHhcCCCHHHH
No 60
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=27.39 E-value=8e+02 Score=26.38 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=21.9
Q ss_pred hhhhhhHhhHHHHHHhHHHHHHHhhcccchHHHHHH
Q 007126 317 HSLKRKHVELVGELSNLHHKEEKLLSETIPDLCWEL 352 (617)
Q Consensus 317 ~~L~~~i~~l~~el~~Le~~i~~l~~~~lp~l~~e~ 352 (617)
..|...|++...-+..++.++ ... -|++.++.
T Consensus 78 ~EL~~~I~egr~~~~~~E~~~---~~~-nPpLf~EY 109 (325)
T PF08317_consen 78 RELKKYISEGRQIFEEIEEET---YES-NPPLFREY 109 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---hhc-CCHHHHHH
Confidence 467777777877777777663 223 47788775
No 61
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=27.27 E-value=3.9e+02 Score=27.90 Aligned_cols=75 Identities=20% Similarity=0.345 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHHhhhhhhhhhhhhhhhhhHHhHHhHHHHHHHHHHH
Q 007126 104 DIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRIASTA 183 (617)
Q Consensus 104 ~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~~~~~~~~L~~~~~~L~~~n~k~n~~L~~l~~~v 183 (617)
|+++.++.++.-++++++.+..+..++..|+... ++.+..|+. |..+|..++..+.++-+.|
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~--------------ee~~erlk~----le~E~s~LeE~~~~l~~ev 193 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEY--------------EEVQERLKR----LEVENSRLEEMLKKLPGEV 193 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHH----HHHHHHHHHHHHHhchhHH
Confidence 4445555555556666665555555444444332 333444444 7888999999999999999
Q ss_pred HHHhhhccCCCCc
Q 007126 184 QELAHYHSGDEDG 196 (617)
Q Consensus 184 ~~L~~~~s~~~~g 196 (617)
..|..-.+...||
T Consensus 194 ~~L~~r~~ELe~~ 206 (290)
T COG4026 194 YDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHhccc
Confidence 9987666555554
No 62
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=26.52 E-value=1.9e+02 Score=27.15 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=31.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 007126 100 EGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHA 137 (617)
Q Consensus 100 e~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~a 137 (617)
+.+++|++-++.|+..+.+|+++-..+..++.+|+...
T Consensus 70 ~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 70 EAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777778888888888999888888888888887764
No 63
>PRK09039 hypothetical protein; Validated
Probab=26.40 E-value=5.1e+02 Score=28.29 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 007126 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (617)
Q Consensus 101 ~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~ 141 (617)
.+..+..++...+.+..+...+...|..++..|..+...+.
T Consensus 117 ~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le 157 (343)
T PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALE 157 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666666666666666666654444
No 64
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=26.30 E-value=3.4e+02 Score=26.17 Aligned_cols=56 Identities=30% Similarity=0.338 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhhhhHhhHHHHHHhHHHHHHHhhcccch
Q 007126 282 RQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLSETIP 346 (617)
Q Consensus 282 ~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~D~~~L~~~i~~l~~el~~Le~~i~~l~~~~lp 346 (617)
-++...+.+.....+-|..|...+.. +.|...|..+..++..++.+++.+.+..-|
T Consensus 86 ~el~~l~~~~k~l~~eL~~L~~~~t~---------~el~~~i~~l~~e~~~l~~kL~~l~~~~~~ 141 (169)
T PF07106_consen 86 EELAELKKEVKSLEAELASLSSEPTN---------EELREEIEELEEEIEELEEKLEKLRSGSKP 141 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 56677777788888888888665542 578999999999999999999998876533
No 65
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=25.70 E-value=5.2e+02 Score=30.95 Aligned_cols=124 Identities=15% Similarity=0.175 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhcCCcchhhhHHHHHHHHHHHH-HhhhccCCCCCCccCChhhhHHHHHHHHHHHHHHH
Q 007126 482 PGIVQQISGLRADLTALQSDLENSLPGDRNRCINELCTLIQSLQ-QLLFASSTTAQPILTPRPLMKELDEMEKINAKLSV 560 (617)
Q Consensus 482 ~~L~~~~~~L~~dl~~lq~~L~~~~~e~~~~~~~~L~~~~~~l~-ql~~~~s~~~q~~Lt~~el~~~l~~le~l~~~L~~ 560 (617)
..+.+....|+.++..|+..++ .+...+..|..-+..++ +-.|.+++|.=+.|+.-|+++....-..-...|.+
T Consensus 499 ~~~~e~~~~L~~~~~~Le~e~~-----~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~ 573 (722)
T PF05557_consen 499 SSLSEELNELQKEIEELERENE-----RLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQA 573 (722)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHH
Confidence 3455666678888888777665 33455666665544322 23566777777889998888877333333333333
Q ss_pred HHHHHHHHHHhHHHhhhcCCh-hhh-hhhhhhhhccCCchHHHHHHHHHHHHHhhh
Q 007126 561 AVEEVTLEHCKKNEIIKHHSQ-EVG-LQRRVFVDFFCNPERLRSQVRELTARVRAL 614 (617)
Q Consensus 561 ~l~dv~~~~~~Kr~~L~~~~~-~~~-~eR~lyV~Ff~~p~~L~~~V~~Le~~~~a~ 614 (617)
-..+++ .+-+.|+.... ... .-...|.-...+-..|+..|+.++++...+
T Consensus 574 En~~L~----~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RL 625 (722)
T PF05557_consen 574 ENEDLL----ARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRL 625 (722)
T ss_dssp HHHHHH----HHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----HHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333 33333433211 000 001112112223367899999999888765
No 66
>cd08776 DED_Caspase-like_repeat1 Death effector domain, repeat 1, of initator caspase-like proteins. Death Effector Domain (DED), first repeat, found in initator caspase-like proteins, like caspase-8 and -10 and c-FLIP. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-8 and -10 are the initiators of death receptor mediated apoptosis. Together with FADD and the pseudo-caspase c-FLIP, they form the death-inducing signaling complex (DISC), whose formation is triggered by the activation of type 1 tumor necrosis factor (TNF) receptors such as Fas, TNF receptor 1, and TRAIL receptor. Caspase-8 and -10 also play important functions in cell adhesion and motility. c-FLIP is a catalytically inactive homolog of the initator procaspases-8 and -10. It negatively influences apoptotic signaling by interfering with the efficient formation of DI
Probab=25.57 E-value=1e+02 Score=26.28 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=39.2
Q ss_pred chhHHHHHhccCCCCCCCCHHHHhHHHHHHhcccCCChhhHHHHHhhccccc
Q 007126 35 ARPILDWICSSLRPSNVLSLSELSQFEQFLQEEKLLEGEDLESAFDSISAFS 86 (617)
Q Consensus 35 ~~~FL~Wfc~nV~~~NVLS~~EL~~f~~L~~sGkiLeg~~Ld~aL~~i~~~~ 86 (617)
...-++|+|..+=|.+.+.. =...|..|+..|++ +-.-|.|.|-.|...+
T Consensus 16 e~~~lkFLC~d~ip~~~le~-~~~lf~~L~e~~~L-~~~fL~ElL~~I~R~D 65 (71)
T cd08776 16 EREVLLFLLNVFIPQPTLAQ-LIGALRALKEEGRL-TLPLLAECLYRAGRRD 65 (71)
T ss_pred HHHHHHHHcccccccccchh-HHHHHHHHHHcCCC-CHHHHHHHHHHhCHHH
Confidence 34568999998888877755 56679999999998 4477888888887643
No 67
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=25.48 E-value=7.1e+02 Score=25.10 Aligned_cols=87 Identities=13% Similarity=0.140 Sum_probs=55.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHHhhhhhhhhhhhhhh---hhhHHhHHhHHHHH
Q 007126 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDD---GLSARNLQMNDVLG 177 (617)
Q Consensus 101 ~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~~~~~~~~L~~~~~---~L~~~n~k~n~~L~ 177 (617)
.+.++...++.+..|...|++.-.....-++++....+.+.+--.....+.-.....|....+ .++....+.+.++.
T Consensus 20 ~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~ 99 (194)
T PF15619_consen 20 ELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELL 99 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888899999999888887777777777777666664443333333445555555433 34444455566666
Q ss_pred HHHHHHHHHh
Q 007126 178 RIASTAQELA 187 (617)
Q Consensus 178 ~l~~~v~~L~ 187 (617)
++-+.++.|.
T Consensus 100 k~~~~l~~L~ 109 (194)
T PF15619_consen 100 KTKDELKHLK 109 (194)
T ss_pred HHHHHHHHHH
Confidence 6555554443
No 68
>PF03801 Ndc80_HEC: HEC/Ndc80p family; InterPro: IPR005550 Members of this family are components of the mitotic spindle. It has been shown that Ndc80 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle.; PDB: 3IZ0_E 2VE7_B 2IGP_A.
Probab=25.41 E-value=20 Score=34.72 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=23.8
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCcccC--CC----CCchhHHHHHhccC
Q 007126 5 RLCALLCELGYGGADSLDPDSFEWPF--QY----DDARPILDWICSSL 46 (617)
Q Consensus 5 ~f~e~LkklGyp~a~~L~~e~fdWlf--~~----~e~~~FL~Wfc~nV 46 (617)
++..+||.||||-+ +|+.. ||. .. |..-..|.|+|.-+
T Consensus 96 ev~~~lK~L~YP~~-~isKS---~L~a~gs~hsWP~lL~~L~WLv~l~ 139 (157)
T PF03801_consen 96 EVPFLLKALGYPFA-TISKS---SLQAPGSPHSWPHLLGALHWLVELI 139 (157)
T ss_dssp HHHHHHHHTT-SS-----HH---HHHSTTSTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcc-ccCHH---HccCCCCcccHHHHHHHHHHHHHHH
Confidence 67889999999996 66643 443 12 44778999999743
No 69
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=25.16 E-value=43 Score=30.55 Aligned_cols=50 Identities=24% Similarity=0.361 Sum_probs=30.7
Q ss_pred CCchhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 007126 89 RDDQEAVFGSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (617)
Q Consensus 89 ~~~~ed~~~~ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~ 141 (617)
+++.++|. .-|+.+..+++.|..++..|+.+...+..++..+......+.
T Consensus 17 GYd~~eVD---~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~ 66 (131)
T PF05103_consen 17 GYDPDEVD---DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQ 66 (131)
T ss_dssp EEEHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------
T ss_pred CcCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 67777663 578888888888889999998888888887777766555554
No 70
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=24.16 E-value=6.1e+02 Score=23.89 Aligned_cols=16 Identities=25% Similarity=0.177 Sum_probs=11.1
Q ss_pred HHHHhcCCCCCCCCCC
Q 007126 8 ALLCELGYGGADSLDP 23 (617)
Q Consensus 8 e~LkklGyp~a~~L~~ 23 (617)
.+|-..|||....+.+
T Consensus 9 ~~L~s~G~~~~~~~~~ 24 (151)
T PF11559_consen 9 QQLLSRGYPSDGLLFD 24 (151)
T ss_pred HHHHHCCCCCCCccCc
Confidence 5677889999744443
No 71
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=23.90 E-value=7.1e+02 Score=28.66 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 007126 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQ 142 (617)
Q Consensus 101 ~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~ 142 (617)
.+..|...+.+++++++.+.++-..+..+-+.|......+.+
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~ 101 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQ 101 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 455555666677777777776666666666666555555543
No 72
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=23.09 E-value=5.7e+02 Score=27.66 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 007126 102 LKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAH 136 (617)
Q Consensus 102 lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~ 136 (617)
+-++++++.+.++.+.++++....+...+..++.+
T Consensus 76 ~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~ 110 (301)
T PF06120_consen 76 IAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQ 110 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666666666555444
No 73
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=22.93 E-value=71 Score=25.13 Aligned_cols=19 Identities=42% Similarity=0.576 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHhhhcc
Q 007126 598 ERLRSQVRELTARVRALQV 616 (617)
Q Consensus 598 ~~L~~~V~~Le~~~~a~~~ 616 (617)
+-|+.+|+.|+.|++.+|.
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~ 20 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQA 20 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999864
No 74
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=22.72 E-value=1.1e+03 Score=27.71 Aligned_cols=36 Identities=28% Similarity=0.154 Sum_probs=29.7
Q ss_pred hhhhhhHhhHHHHHHhHHHHHHHhhcccchHHHHHH
Q 007126 317 HSLKRKHVELVGELSNLHHKEEKLLSETIPDLCWEL 352 (617)
Q Consensus 317 ~~L~~~i~~l~~el~~Le~~i~~l~~~~lp~l~~e~ 352 (617)
+.|+.|...+.+|.-.++.+...|+.+++..-.|+.
T Consensus 162 EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq 197 (596)
T KOG4360|consen 162 EALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQ 197 (596)
T ss_pred HHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHH
Confidence 456666667888888899999999999988888886
No 75
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=22.55 E-value=8e+02 Score=24.70 Aligned_cols=135 Identities=22% Similarity=0.212 Sum_probs=87.7
Q ss_pred hHhhHHHHHHhHHHHHHHhhcccchHHHHHHhcccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007126 322 KHVELVGELSNLHHKEEKLLSETIPDLCWELAQLQDTYILQGDYDLKVMRQELYISRQKAFINHLINQLARHQFLRLACH 401 (617)
Q Consensus 322 ~i~~l~~el~~Le~~i~~l~~~~lp~l~~e~AqL~~~pIl~GD~dLqiaRQdyy~srQ~~v~n~Li~Q~ar~elL~la~e 401 (617)
+|-.|..++..+...++.+..+- ++.|+-. .||+..|+.+.+.-+.+-=+--...
T Consensus 13 ki~~L~n~l~elq~~l~~l~~EN-----------------------k~Lk~lq--~Rq~kAL~k~e~~e~~Lpqll~~h~ 67 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKEN-----------------------KTLKQLQ--KRQEKALQKYEDTEAELPQLLQRHN 67 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 45677777777777766665552 1222222 2788888888888887776667778
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhcccccCCCCCCchhhHHHHHHHhcCCCCcccccccccCh
Q 007126 402 LEKRNMLAAYSLLKVIESELQGYLSATKSRVGRCLALIEAASDVQEQGAVDDRDTFLHGVRDLLSIHSNAQAGLSTYVSA 481 (617)
Q Consensus 402 ~E~r~~~~~~~lL~~i~~eL~~~~s~~~~r~~~~~~~sq~~~~~~~~~~Id~rD~~~~rl~~lL~~~~~~q~~f~ty~s~ 481 (617)
-|.|.++.-++-...-...++.........+....+ .+.+|.++.+.
T Consensus 68 eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~-------------------~l~~L~~L~~d-------------- 114 (194)
T PF15619_consen 68 EEVRVLRERLRKSQEQERELERKLKDKDEELLKTKD-------------------ELKHLKKLSED-------------- 114 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHc--------------
Confidence 888888888888888888777777777776654221 33345555443
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhcCCcchhhhHHHHHHH
Q 007126 482 PGIVQQISGLRADLTALQSDLENSLPGDRNRCINELCTL 520 (617)
Q Consensus 482 ~~L~~~~~~L~~dl~~lq~~L~~~~~e~~~~~~~~L~~~ 520 (617)
.+|.+ ..+|...|+.+...++.. ++.+..|...
T Consensus 115 knL~e-ReeL~~kL~~~~~~l~~~-----~~ki~~Lek~ 147 (194)
T PF15619_consen 115 KNLAE-REELQRKLSQLEQKLQEK-----EKKIQELEKQ 147 (194)
T ss_pred CCchh-HHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 23433 356777777777777744 3455565554
No 76
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=22.42 E-value=5.3e+02 Score=23.44 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 007126 104 DIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (617)
Q Consensus 104 ~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~ 141 (617)
.+....+.|..++..++.++..+...+..+......+.
T Consensus 3 ql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~ 40 (126)
T TIGR00293 3 QLAAELQILQQQVESLQAQIAALRALIAELETAIETLE 40 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666777777777777766666666666555553
No 77
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=22.40 E-value=9.1e+02 Score=25.26 Aligned_cols=9 Identities=33% Similarity=0.375 Sum_probs=4.7
Q ss_pred HHHHHHHHH
Q 007126 396 LRLACHLEK 404 (617)
Q Consensus 396 L~la~e~E~ 404 (617)
++|++++|.
T Consensus 291 ~K~~Ld~EI 299 (312)
T PF00038_consen 291 VKLALDAEI 299 (312)
T ss_dssp HHHHHHHHH
T ss_pred HHHhHHHHH
Confidence 345555554
No 78
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=22.22 E-value=2.6e+02 Score=28.91 Aligned_cols=102 Identities=12% Similarity=0.236 Sum_probs=54.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHHhhhhhhhhhhhhhhhhhHHhHHhHHHHHHHH
Q 007126 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRIA 180 (617)
Q Consensus 101 ~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~~~~~~~~L~~~~~~L~~~n~k~n~~L~~l~ 180 (617)
--++.+..++.|+.-+..+.+....+..++..|-...... ++-+...- -...+.-+...|.+++
T Consensus 23 ~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~ef--------------a~s~~~L~--~~E~~~~ls~~l~~la 86 (234)
T cd07664 23 WFEEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAF--------------AKSAAMLG--NSEDHTALSRALSQLA 86 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH--cCcccchHHHHHHHHH
Confidence 3556666677777777777766666666665544433333 22222100 0113445666777777
Q ss_pred HHHHHHhhhccCCCC-ccc-ccccCChhhhhhcchhHHHHH
Q 007126 181 STAQELAHYHSGDED-GIY-LAYSDFHPYLLGDSSSMKELN 219 (617)
Q Consensus 181 ~~v~~L~~~~s~~~~-gvf-lsq~~le~Yl~qee~~t~~Lt 219 (617)
+...++..-+..+.. ..+ |+ -||+.|+.-..+....|.
T Consensus 87 ev~~ki~~~~~~qa~~d~~~l~-e~L~eYiR~i~svK~~f~ 126 (234)
T cd07664 87 EVEEKIDQLHQDQAFADFYLFS-ELLGDYIRLIAAVKGVFD 126 (234)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH-hhHHHHHHHHHHHHHHHH
Confidence 777776655443322 111 22 367777776666655554
No 79
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=22.14 E-value=3.2e+02 Score=26.34 Aligned_cols=38 Identities=24% Similarity=0.502 Sum_probs=25.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 007126 98 SEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTA 135 (617)
Q Consensus 98 ~ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~ 135 (617)
..+++.++..++..|++++..++.....+...++.|..
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567777667777777777777777776665555444
No 80
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=21.64 E-value=8.2e+02 Score=24.90 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=30.2
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 007126 98 SEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLT 134 (617)
Q Consensus 98 ~ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~ 134 (617)
.+++-|.|+.++.++|+||.+|..-+...+.+..+|.
T Consensus 42 Se~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELK 78 (208)
T KOG4010|consen 42 SEEEKEELRTELAKVEEEIVTLRQVLAAKERHAAELK 78 (208)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999998888877555544
No 81
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=21.47 E-value=6.7e+02 Score=27.16 Aligned_cols=98 Identities=12% Similarity=0.137 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHHhhhhhhhhhhhhhhhhhHHhHHhHHHHHHH
Q 007126 100 EGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRI 179 (617)
Q Consensus 100 e~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~~~~~~~~L~~~~~~L~~~n~k~n~~L~~l 179 (617)
+.+..+++.+.....++..+.+....++.++..+...............+...++.+.+++ +..-...--..|..-
T Consensus 204 ~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~----~r~~t~~Ei~~Lk~~ 279 (312)
T smart00787 204 TELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ----CRGFTFKEIEKLKEQ 279 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCHHHHHHHHHH
Q ss_pred HHHHHHHhhh--ccCCCCcccccc
Q 007126 180 ASTAQELAHY--HSGDEDGIYLAY 201 (617)
Q Consensus 180 ~~~v~~L~~~--~s~~~~gvflsq 201 (617)
.+..+++.+. .+..++.+-|.+
T Consensus 280 ~~~Le~l~g~~~~~~~~~~l~~~~ 303 (312)
T smart00787 280 LKLLQSLTGWKITKLSGNTLSMTY 303 (312)
T ss_pred HHHHHHHhCCeeEeccCCeEEEEe
No 82
>PRK09039 hypothetical protein; Validated
Probab=21.36 E-value=3.6e+02 Score=29.43 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=44.1
Q ss_pred HHHHHhHhhHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhhhhHhhHHHHHHhHHHHHHHhhcc
Q 007126 268 SELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLSE 343 (617)
Q Consensus 268 ~EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~D~~~L~~~i~~l~~el~~Le~~i~~l~~~ 343 (617)
.+|...+..|.-+..++..++.+.+.+++-|..+..... ....+..+...++..++..++..+-+
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~-----------~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALD-----------ASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488888999999999998888888887776666655442 33344455555555555555555433
No 83
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=21.05 E-value=7e+02 Score=23.46 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=19.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 007126 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTL 140 (617)
Q Consensus 101 ~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l 140 (617)
..|++......++.++..++.....+..++..++......
T Consensus 53 ~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~ 92 (151)
T PF11559_consen 53 QREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASA 92 (151)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555554444444444333
No 84
>PHA02562 46 endonuclease subunit; Provisional
Probab=20.58 E-value=6.5e+02 Score=28.58 Aligned_cols=88 Identities=9% Similarity=0.156 Sum_probs=0.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHHhhhhhhhhhhhhhhhhhHHhHHhHHHHH
Q 007126 98 SEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLG 177 (617)
Q Consensus 98 ~ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~~~~~~~~L~~~~~~L~~~n~k~n~~L~ 177 (617)
....+.+|+..+..+++.+.+++...........++...-..+. ..+.-+.........++..-+.|..++.+.+.+|.
T Consensus 304 l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~-~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~ 382 (562)
T PHA02562 304 IKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKIS-TNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELA 382 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Q ss_pred HHHHHHHHH
Q 007126 178 RIASTAQEL 186 (617)
Q Consensus 178 ~l~~~v~~L 186 (617)
.+.+...++
T Consensus 383 ~l~~~l~~~ 391 (562)
T PHA02562 383 KLQDELDKI 391 (562)
T ss_pred HHHHHHHHH
No 85
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.38 E-value=1.9e+03 Score=28.30 Aligned_cols=53 Identities=6% Similarity=0.008 Sum_probs=24.6
Q ss_pred HhHHHHHHHHHHHHHHhhhc--c--CCCCcccccccCChhhhhhcchhHHHHHHHHHh
Q 007126 171 QMNDVLGRIASTAQELAHYH--S--GDEDGIYLAYSDFHPYLLGDSSSMKELNQWFSK 224 (617)
Q Consensus 171 k~n~~L~~l~~~v~~L~~~~--s--~~~~gvflsq~~le~Yl~qee~~t~~Lt~y~kK 224 (617)
+....++.+..+..-+..|. . ...+--.++.=+|..==. ...|++.|..-+.+
T Consensus 650 ~~~~~~~~~~~~~~~~~k~ie~a~~~~~~~C~LC~R~f~~eee-~~~f~~~L~~~~~~ 706 (1311)
T TIGR00606 650 KSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAE-LQEFISDLQSKLRL 706 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCChhH-HHHHHHHHHHHHhc
Confidence 33334444444444444442 1 223335666666654111 13566666666544
No 86
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=20.35 E-value=5.4e+02 Score=25.46 Aligned_cols=96 Identities=16% Similarity=0.208 Sum_probs=0.0
Q ss_pred hhHHHHHhhcccccCC-CCchhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHHhh
Q 007126 73 EDLESAFDSISAFSSR-RDDQEAVFGSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAAT 151 (617)
Q Consensus 73 ~~Ld~aL~~i~~~~~~-~~~~ed~~~~ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~~ 151 (617)
++|.+++++++..... ..--...-..+..+......+..|+.++..|+.....+...+.........+.-..-.+....
T Consensus 81 ~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~ 160 (194)
T PF08614_consen 81 EELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQL 160 (194)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhhhhhhhHHhHHh
Q 007126 152 STVNGHLSILDDGLSARNLQM 172 (617)
Q Consensus 152 ~~~~~~L~~~~~~L~~~n~k~ 172 (617)
......+.. +..+|.++
T Consensus 161 ~~~e~k~~~----l~~En~~L 177 (194)
T PF08614_consen 161 NMLEEKLRK----LEEENREL 177 (194)
T ss_dssp HHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHH
No 87
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.25 E-value=5.1e+02 Score=27.58 Aligned_cols=32 Identities=16% Similarity=0.317 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 007126 110 QAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (617)
Q Consensus 110 e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~ 141 (617)
..=..++..+++.+.-++.+++.|...+..++
T Consensus 34 ~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~ 65 (265)
T COG3883 34 QNQDSKLSELQKEKKNIQNEIESLDNQIEEIQ 65 (265)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555544444
No 88
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.23 E-value=7.8e+02 Score=25.27 Aligned_cols=87 Identities=17% Similarity=0.168 Sum_probs=57.0
Q ss_pred chhhhhhHhhHHHHHHhHHHHHHHhhcccchHHHHHHhcccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHH--HH
Q 007126 316 FHSLKRKHVELVGELSNLHHKEEKLLSETIPDLCWELAQLQDTYILQGDYDLKVMRQELYISRQKAFINHLINQLA--RH 393 (617)
Q Consensus 316 ~~~L~~~i~~l~~el~~Le~~i~~l~~~~lp~l~~e~AqL~~~pIl~GD~dLqiaRQdyy~srQ~~v~n~Li~Q~a--r~ 393 (617)
..|+..||+.|-.||..++.++.++...+--..||.-| +.|| +|+++...-..++. +|
T Consensus 28 ~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrA----lrVL----------------kQKK~yE~q~d~L~~Qsf 87 (218)
T KOG1655|consen 28 SDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRA----LRVL----------------KQKKMYENQKDSLDQQSF 87 (218)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHH----HHHH----------------HHHHHHHHHHHHHHHhcc
Confidence 36899999999999999999999999998888887754 3455 55554333222222 56
Q ss_pred HHHHHHHHHHHH-hHHHHHHHHHHHHHHHh
Q 007126 394 QFLRLACHLEKR-NMLAAYSLLKVIESELQ 422 (617)
Q Consensus 394 elL~la~e~E~r-~~~~~~~lL~~i~~eL~ 422 (617)
.+=+-.+..|.- .-..+..-|+.-..+++
T Consensus 88 NMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK 117 (218)
T KOG1655|consen 88 NMEQANFTAESLKDTQATVAAMKDTNKEMK 117 (218)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666643 33344444444444444
Done!