Query 007126
Match_columns 617
No_of_seqs 84 out of 86
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 17:49:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007126.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007126hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8t_A Beclin-1; autophagy, AT 73.5 29 0.00098 29.8 10.3 84 96-179 7-90 (96)
2 2ve7_A Kinetochore protein HEC 69.0 5.4 0.00019 41.3 5.6 37 5-46 72-114 (315)
3 3i5g_C Myosin catalytic light 54.5 12 0.00042 33.8 4.6 77 3-83 30-115 (159)
4 3u1c_A Tropomyosin alpha-1 cha 44.6 92 0.0031 26.8 8.3 42 99-140 29-70 (101)
5 3u59_A Tropomyosin beta chain; 42.0 1.1E+02 0.0036 26.2 8.3 43 99-141 29-71 (101)
6 3mq9_A Bone marrow stromal ant 41.1 1.7E+02 0.0058 30.9 11.6 71 116-187 399-470 (471)
7 2jee_A YIIU; FTSZ, septum, coi 39.8 1.7E+02 0.0057 24.6 9.6 33 109-141 8-40 (81)
8 3bas_A Myosin heavy chain, str 37.8 1.5E+02 0.0053 24.7 8.5 36 101-136 22-57 (89)
9 3i5g_B Myosin regulatory light 35.4 13 0.00045 33.3 1.5 76 2-83 34-115 (153)
10 3oja_B Anopheles plasmodium-re 35.3 1.4E+02 0.0049 32.3 10.1 16 29-44 391-406 (597)
11 1i6z_A BAG-family molecular ch 28.0 3.5E+02 0.012 24.7 10.0 20 205-224 106-125 (135)
12 2ovk_C Myosin catalytic light 27.4 25 0.00085 30.5 1.9 77 3-83 30-115 (159)
13 1go4_E MAD1 (mitotic arrest de 26.7 33 0.0011 29.9 2.5 40 315-366 13-52 (100)
14 2yy0_A C-MYC-binding protein; 25.8 1E+02 0.0034 23.7 4.8 27 109-135 21-47 (53)
15 2jee_A YIIU; FTSZ, septum, coi 25.7 2.3E+02 0.0078 23.7 7.3 41 101-141 28-68 (81)
16 2dfs_A Myosin-5A; myosin-V, in 24.8 3.7E+02 0.013 32.3 11.8 10 124-133 987-996 (1080)
17 3iv1_A Tumor susceptibility ge 23.2 2.7E+02 0.0091 23.1 7.2 40 105-144 16-55 (78)
18 1wdc_B Scallop myosin; calcium 22.9 36 0.0012 29.4 2.0 75 2-82 36-116 (156)
19 3hnw_A Uncharacterized protein 22.9 3.1E+02 0.011 24.8 8.4 31 106-136 74-104 (138)
20 2w83_C C-JUN-amino-terminal ki 22.8 3.1E+02 0.01 22.7 7.3 44 101-144 10-53 (77)
21 2mys_C Myosin; muscle protein, 22.6 65 0.0022 27.1 3.6 76 3-82 27-114 (149)
22 2yy0_A C-MYC-binding protein; 22.4 1.3E+02 0.0045 23.0 4.8 32 101-132 20-51 (53)
23 3hnw_A Uncharacterized protein 22.2 2.7E+02 0.0092 25.2 7.8 39 98-136 73-111 (138)
24 2l5g_A GPS2 protein, G protein 21.6 1.5E+02 0.005 21.4 4.5 29 100-128 8-36 (38)
25 3qrx_A Centrin; calcium-bindin 20.4 69 0.0024 27.8 3.4 76 2-83 46-147 (169)
26 1ggw_A Protein (CDC4P); light 20.4 64 0.0022 27.1 3.1 77 2-82 23-105 (140)
No 1
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=73.50 E-value=29 Score=29.83 Aligned_cols=84 Identities=17% Similarity=0.131 Sum_probs=50.5
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHHhhhhhhhhhhhhhhhhhHHhHHhHHH
Q 007126 96 FGSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDV 175 (617)
Q Consensus 96 ~~~ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~~~~~~~~L~~~~~~L~~~n~k~n~~ 175 (617)
.+.+..+.+++.+-..|-.++..+++....+...+..++..+..+.......-..-.....++-..++.+.+.+.++...
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~ 86 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYA 86 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666776677777777777777777777777666666655554443333333444445555555666666666655
Q ss_pred HHHH
Q 007126 176 LGRI 179 (617)
Q Consensus 176 L~~l 179 (617)
..+|
T Consensus 87 ~~qL 90 (96)
T 3q8t_A 87 QMQL 90 (96)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 2
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=68.98 E-value=5.4 Score=41.31 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCcccC--CC----CCchhHHHHHhccC
Q 007126 5 RLCALLCELGYGGADSLDPDSFEWPF--QY----DDARPILDWICSSL 46 (617)
Q Consensus 5 ~f~e~LkklGyp~a~~L~~e~fdWlf--~~----~e~~~FL~Wfc~nV 46 (617)
++..+||.||||-. |+. .||. .. |.+-..|.|++.-+
T Consensus 72 ev~~~lK~L~YP~~--isK---S~L~a~g~pHsWp~~Lg~L~WLvel~ 114 (315)
T 2ve7_A 72 EVPRIFKDLGYPFA--LSK---SSMYTVGAPHTWPHIVAALVWLIDCI 114 (315)
T ss_dssp HHHHHHHHTTCSSC--CCH---HHHHTTTSTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCce--eCH---HHhcCCCCCCcHHHHHHHHHHHHHHH
Confidence 57789999999986 543 2443 22 33778899998755
No 3
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=54.51 E-value=12 Score=33.75 Aligned_cols=77 Identities=16% Similarity=0.164 Sum_probs=56.0
Q ss_pred hhHHHHHHHhcCCCCCCCCCCCCCcccCC-------CCCchhHHHHHhccCCCCCCCCHHHH-hHHHHHHhccc-CCChh
Q 007126 3 GARLCALLCELGYGGADSLDPDSFEWPFQ-------YDDARPILDWICSSLRPSNVLSLSEL-SQFEQFLQEEK-LLEGE 73 (617)
Q Consensus 3 g~~f~e~LkklGyp~a~~L~~e~fdWlf~-------~~e~~~FL~Wfc~nV~~~NVLS~~EL-~~f~~L~~sGk-iLeg~ 73 (617)
-.+|...|+.+|+.-+ .+.+.-++. .-++..|+.++.......+.-+.+++ .+|..+-..|. .++-+
T Consensus 30 ~~El~~~lr~lG~~~t----~~el~~~~~~d~~~~g~i~f~eFl~~~~~~~~~~~~~~~~~l~~aF~~fD~d~~G~I~~~ 105 (159)
T 3i5g_C 30 AAKVGDLLRCLGMNPT----EAQVHQHGGTKKMGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSA 105 (159)
T ss_dssp GGGHHHHHHHTTCCCC----HHHHHTTTCCSSTTSCEECHHHHHHHHHHHTTCCTTCCHHHHHHHHHHHCTTSSSEECHH
T ss_pred HHHHHHHHHHcCCCCC----HHHHHHHHcccccCCCcccHHHHHHHHHHhhcccccchHHHHHHHHHHHhcCCCCcCcHH
Confidence 4689999999998654 222222331 12478899999887776667777776 47999988888 78999
Q ss_pred hHHHHHhhcc
Q 007126 74 DLESAFDSIS 83 (617)
Q Consensus 74 ~Ld~aL~~i~ 83 (617)
+|-.++.++.
T Consensus 106 el~~~l~~~g 115 (159)
T 3i5g_C 106 EIRNVLKMLG 115 (159)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHHhC
Confidence 9999988765
No 4
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=44.57 E-value=92 Score=26.75 Aligned_cols=42 Identities=24% Similarity=0.263 Sum_probs=30.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 007126 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTL 140 (617)
Q Consensus 99 ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l 140 (617)
+..+++.+......+.++..|++....+...++.++......
T Consensus 29 e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 29 EADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667778888888888888888888888776654433
No 5
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=41.96 E-value=1.1e+02 Score=26.20 Aligned_cols=43 Identities=14% Similarity=0.228 Sum_probs=31.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 007126 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (617)
Q Consensus 99 ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~ 141 (617)
+..+++.+......+.++..+++....+...++.++.......
T Consensus 29 e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~ 71 (101)
T 3u59_A 29 EADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQ 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667778888888888888888888887766554443
No 6
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=41.13 E-value=1.7e+02 Score=30.92 Aligned_cols=71 Identities=20% Similarity=0.170 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHHhh-hhhhhhhhhhhhhhhHHhHHhHHHHHHHHHHHHHHh
Q 007126 116 AAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAAT-STVNGHLSILDDGLSARNLQMNDVLGRIASTAQELA 187 (617)
Q Consensus 116 ~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~~-~~~~~~L~~~~~~L~~~n~k~n~~L~~l~~~v~~L~ 187 (617)
...||+++...+..+-.+..+|++-++..-.+-+.- .++...+++++ .+..+.+++|..|+.....|+++.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 399 THLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVE-ELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344777777777777788888888776655554443 23333333333 378888999999999988888764
No 7
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=39.82 E-value=1.7e+02 Score=24.55 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 007126 109 TQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (617)
Q Consensus 109 ~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~ 141 (617)
+++|+.-|+.+-.+...++-.++.|....+.+.
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~ 40 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLS 40 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666666655555544
No 8
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=37.83 E-value=1.5e+02 Score=24.71 Aligned_cols=36 Identities=17% Similarity=0.089 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 007126 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAH 136 (617)
Q Consensus 101 ~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~ 136 (617)
.++.+++.+++-+....+++.....+....|.|..+
T Consensus 22 el~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 22 QMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555555555555555555555554
No 9
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=35.37 E-value=13 Score=33.32 Aligned_cols=76 Identities=13% Similarity=0.218 Sum_probs=51.6
Q ss_pred ChhHHHHHHHhcCCCCCCCCCCCCCcccC----CCCCchhHHHHHhccCCCCCCCCHHHH-hHHHHHHhccc-CCChhhH
Q 007126 2 SGARLCALLCELGYGGADSLDPDSFEWPF----QYDDARPILDWICSSLRPSNVLSLSEL-SQFEQFLQEEK-LLEGEDL 75 (617)
Q Consensus 2 ~g~~f~e~LkklGyp~a~~L~~e~fdWlf----~~~e~~~FL~Wfc~nV~~~NVLS~~EL-~~f~~L~~sGk-iLeg~~L 75 (617)
+-.+|...|+.+|++.+. +.+.-++ ..-++..|+.+++..+...+ +++++ .+|..+-..|. .++.++|
T Consensus 34 ~~~El~~~l~~lg~~~~~----~~~~~~~~~~~~~i~f~ef~~~~~~~~~~~~--~~~~l~~aF~~fD~d~~G~I~~~el 107 (153)
T 3i5g_B 34 GMEDLKDMFSSLGRVPPD----DELNAMLKECPGQLNFTAFLTLFGEKVSGTD--PEDALRNAFSMFDEDGQGFIPEDYL 107 (153)
T ss_dssp CHHHHHHHHHHTTSCCCH----HHHHHHHHTSSSCCCSHHHHHTTTTTTTTCC--CHHHHHHHHHTTCSSCSSCCCHHHH
T ss_pred cHHHHHHHHHHcCCCccH----HHHHHHHHhccCCccHHHHHHHHHhhhcccc--cHHHHHHHHhccccCCCCeEeHHHH
Confidence 346888999999988763 2222222 23457888888887766543 44554 47888877777 7888888
Q ss_pred HHHHhhcc
Q 007126 76 ESAFDSIS 83 (617)
Q Consensus 76 d~aL~~i~ 83 (617)
-.++.++.
T Consensus 108 ~~~l~~~g 115 (153)
T 3i5g_B 108 KDLLENMG 115 (153)
T ss_dssp HHHHHSSS
T ss_pred HHHHHHcC
Confidence 88887654
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=35.31 E-value=1.4e+02 Score=32.34 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=9.1
Q ss_pred cCCCCCchhHHHHHhc
Q 007126 29 PFQYDDARPILDWICS 44 (617)
Q Consensus 29 lf~~~e~~~FL~Wfc~ 44 (617)
+|+.+...|++.++..
T Consensus 391 ~cc~~~~~~~~~~~~~ 406 (597)
T 3oja_B 391 LCCKESDKPYLDRLLQ 406 (597)
T ss_dssp EEEECCSSHHHHHHHH
T ss_pred ccccCCCccchhHHHH
Confidence 3444566777765443
No 11
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=28.02 E-value=3.5e+02 Score=24.69 Aligned_cols=20 Identities=10% Similarity=0.023 Sum_probs=15.2
Q ss_pred hhhhhhcchhHHHHHHHHHh
Q 007126 205 HPYLLGDSSSMKELNQWFSK 224 (617)
Q Consensus 205 e~Yl~qee~~t~~Lt~y~kK 224 (617)
+.|+.+||.-.+.++.|+.+
T Consensus 106 Q~~L~~~D~l~~~~~~~~~~ 125 (135)
T 1i6z_A 106 QVFLAECDTVEQYICQETER 125 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888888754
No 12
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=27.44 E-value=25 Score=30.54 Aligned_cols=77 Identities=16% Similarity=0.159 Sum_probs=47.8
Q ss_pred hhHHHHHHHhcCCCCCCCCCCCCCcccCCC-------CCchhHHHHHhccCCCCCCCCHHHHh-HHHHHHhccc-CCChh
Q 007126 3 GARLCALLCELGYGGADSLDPDSFEWPFQY-------DDARPILDWICSSLRPSNVLSLSELS-QFEQFLQEEK-LLEGE 73 (617)
Q Consensus 3 g~~f~e~LkklGyp~a~~L~~e~fdWlf~~-------~e~~~FL~Wfc~nV~~~NVLS~~EL~-~f~~L~~sGk-iLeg~ 73 (617)
-.+|...|+.+|++.+ .+.+..+|.. -++..|+.++.........-..+++. +|..+-..|. .++.+
T Consensus 30 ~~el~~~l~~lg~~~~----~~~~~~l~~~~d~~~g~i~~~eF~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~ 105 (159)
T 2ovk_C 30 AAKVGDLLRCLGMNPT----EAQVHQHGGTKKMGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSA 105 (159)
T ss_dssp GGGHHHHHHHTTCCCC----HHHHHHTTCCSSTTSCEEEHHHHHHHHHHHTTCSTTCCHHHHHHHHHHTCTTSSSEECHH
T ss_pred HHHHHHHHHHcCCCCC----HHHHHHHHHHhcCCCCeEcHHHHHHHHHHHhhccCCCcHHHHHHHHHHHCCCCCCcCcHH
Confidence 4689999999998654 4445555521 23677888875433333333444443 5666666666 67777
Q ss_pred hHHHHHhhcc
Q 007126 74 DLESAFDSIS 83 (617)
Q Consensus 74 ~Ld~aL~~i~ 83 (617)
++-.++..+.
T Consensus 106 El~~~l~~~g 115 (159)
T 2ovk_C 106 EIRNVLKMLG 115 (159)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHHhC
Confidence 7777776653
No 13
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=26.67 E-value=33 Score=29.87 Aligned_cols=40 Identities=48% Similarity=0.623 Sum_probs=0.0
Q ss_pred cchhhhhhHhhHHHHHHhHHHHHHHhhcccchHHHHHHhcccccccccchhh
Q 007126 315 DFHSLKRKHVELVGELSNLHHKEEKLLSETIPDLCWELAQLQDTYILQGDYD 366 (617)
Q Consensus 315 D~~~L~~~i~~l~~el~~Le~~i~~l~~~~lp~l~~e~AqL~~~pIl~GD~d 366 (617)
...+|+.+|.+|..|...|+.+++.+ + ++|.... ++||||
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~L--E---------~~Le~~~-l~Gd~~ 52 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRML--E---------AQLERRA-LQGDYD 52 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--H---------HHHHHSS-CCSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--H---------HHHHHHh-hccccC
No 14
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=25.83 E-value=1e+02 Score=23.67 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 007126 109 TQAYRDEAAQLQRQLRHLQCQFDMLTA 135 (617)
Q Consensus 109 ~e~Le~e~~~lqk~~~~l~~~~n~L~~ 135 (617)
.++|+.|..+|+.....+..+..+|..
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555554444433
No 15
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=25.70 E-value=2.3e+02 Score=23.72 Aligned_cols=41 Identities=15% Similarity=0.257 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 007126 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (617)
Q Consensus 101 ~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~ 141 (617)
+++.|++.-..|..+.++++.....+..+.+.|...-+...
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq 68 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544444444444444443333333
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=24.78 E-value=3.7e+02 Score=32.30 Aligned_cols=10 Identities=30% Similarity=0.212 Sum_probs=3.6
Q ss_pred HHHHhhhhhh
Q 007126 124 RHLQCQFDML 133 (617)
Q Consensus 124 ~~l~~~~n~L 133 (617)
..++.+...+
T Consensus 987 ~~L~~e~~~l 996 (1080)
T 2dfs_A 987 LSLQEEIAKL 996 (1080)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 17
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=23.18 E-value=2.7e+02 Score=23.15 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhh
Q 007126 105 IREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGR 144 (617)
Q Consensus 105 l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~ 144 (617)
+++.......|++.|.++.+-|..-..+|..+.+.+....
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~ 55 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEV 55 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3455777778888888888877777777777776666443
No 18
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=22.94 E-value=36 Score=29.39 Aligned_cols=75 Identities=16% Similarity=0.184 Sum_probs=43.3
Q ss_pred ChhHHHHHHHhcCCCCCCCCCCCCCcccCCC----CCchhHHHHHhccCCCCCCCCHHHH-hHHHHHHhccc-CCChhhH
Q 007126 2 SGARLCALLCELGYGGADSLDPDSFEWPFQY----DDARPILDWICSSLRPSNVLSLSEL-SQFEQFLQEEK-LLEGEDL 75 (617)
Q Consensus 2 ~g~~f~e~LkklGyp~a~~L~~e~fdWlf~~----~e~~~FL~Wfc~nV~~~NVLS~~EL-~~f~~L~~sGk-iLeg~~L 75 (617)
+-.+|...|+.+|++.+ .+.+..+|.+ -++..|+.++...+...+ +.+++ .+|..+-..|. .++.+++
T Consensus 36 ~~~el~~~l~~~g~~~~----~~~~~~~~~~~~g~i~~~eF~~~~~~~~~~~~--~~~~l~~~F~~~D~d~~G~I~~~el 109 (156)
T 1wdc_B 36 SKEDIKAISEQLGRAPD----DKELTAMLKEAPGPLNFTMFLSIFSDKLSGTD--SEETIRNAFAMFDEQETKKLNIEYI 109 (156)
T ss_dssp CHHHHHHHHHHHSSCCC----HHHHHHHHTTSSSCCCHHHHHHHHHHHTCSCC--CHHHHHHHHHTTCTTCCSCEEHHHH
T ss_pred cHHHHHHHHHHhCCCCC----HHHHHHHHHhCCCcCcHHHHHHHHHHHhcCCC--hHHHHHHHHHHHCcCCCCccCHHHH
Confidence 34688888888887644 4455666632 346777777765443221 23333 24555555555 5666666
Q ss_pred HHHHhhc
Q 007126 76 ESAFDSI 82 (617)
Q Consensus 76 d~aL~~i 82 (617)
-.++..+
T Consensus 110 ~~~l~~~ 116 (156)
T 1wdc_B 110 KDLLENM 116 (156)
T ss_dssp HHHHHHS
T ss_pred HHHHHHh
Confidence 6666554
No 19
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=22.90 E-value=3.1e+02 Score=24.83 Aligned_cols=31 Identities=3% Similarity=0.118 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 007126 106 REATQAYRDEAAQLQRQLRHLQCQFDMLTAH 136 (617)
Q Consensus 106 ~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~ 136 (617)
+...+.|+.++.++.+....+.+++..++..
T Consensus 74 ~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k 104 (138)
T 3hnw_A 74 KKMADSLSLDIENKDKEIYDLKHELIAAQIK 104 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444
No 20
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=22.77 E-value=3.1e+02 Score=22.74 Aligned_cols=44 Identities=14% Similarity=0.113 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhh
Q 007126 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGR 144 (617)
Q Consensus 101 ~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~ 144 (617)
++|.|-.+-..|-.-...+.-.++.|+.+.+.|+..-..+....
T Consensus 10 evEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El 53 (77)
T 2w83_C 10 EVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGEL 53 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45555555555555555555556667777777777666665333
No 21
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=22.59 E-value=65 Score=27.06 Aligned_cols=76 Identities=9% Similarity=0.150 Sum_probs=37.3
Q ss_pred hhHHHHHHHhcCCCCCCCCCCCCCcccC----------CCCCchhHHHHHhccCCCCCCCCHHHH-hHHHHHHhccc-CC
Q 007126 3 GARLCALLCELGYGGADSLDPDSFEWPF----------QYDDARPILDWICSSLRPSNVLSLSEL-SQFEQFLQEEK-LL 70 (617)
Q Consensus 3 g~~f~e~LkklGyp~a~~L~~e~fdWlf----------~~~e~~~FL~Wfc~nV~~~NVLS~~EL-~~f~~L~~sGk-iL 70 (617)
-.+|...|+.+|++.+ ++.+..+| ..-++..|+.+++......+--+..++ ..|..+-..|. .+
T Consensus 27 ~~el~~~l~~~~~~~~----~~~~~~l~~~~~~~d~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i 102 (149)
T 2mys_C 27 ASQVGDIARALGQNPT----NAEINKILGNPSKEEMNAAAITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTV 102 (149)
T ss_pred HHHHHHHHHHhCCCCC----HHHHHHHHHHhhhccccCCcCcHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCCceE
Confidence 3577778888877643 33344444 112455566655553111111122222 24555555555 56
Q ss_pred ChhhHHHHHhhc
Q 007126 71 EGEDLESAFDSI 82 (617)
Q Consensus 71 eg~~Ld~aL~~i 82 (617)
+.+++-.++..+
T Consensus 103 ~~~el~~~l~~~ 114 (149)
T 2mys_C 103 MGAELRHVLATL 114 (149)
T ss_pred cHHHHHHHHHHh
Confidence 666666665554
No 22
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=22.36 E-value=1.3e+02 Score=23.02 Aligned_cols=32 Identities=6% Similarity=0.193 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007126 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDM 132 (617)
Q Consensus 101 ~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~ 132 (617)
.+|.|+.+...|+..+..|+++..-+..++++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56778888888888888888888777777664
No 23
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=22.17 E-value=2.7e+02 Score=25.23 Aligned_cols=39 Identities=10% Similarity=0.068 Sum_probs=20.9
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 007126 98 SEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAH 136 (617)
Q Consensus 98 ~ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~ 136 (617)
..+..+.++..++.+.+|+.+++..+...+-+.+.+...
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e 111 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKE 111 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555555554443
No 24
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.62 E-value=1.5e+02 Score=21.37 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=23.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007126 100 EGLKDIREATQAYRDEAAQLQRQLRHLQC 128 (617)
Q Consensus 100 e~lE~l~~~~e~Le~e~~~lqk~~~~l~~ 128 (617)
..+++.++.+..|+..+..|++-++.+=.
T Consensus 8 mTLeEtkeQi~~l~~kl~~LkeEKHQLFl 36 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQEEKHQLFL 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888889999999999888876543
No 25
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=20.40 E-value=69 Score=27.77 Aligned_cols=76 Identities=13% Similarity=0.194 Sum_probs=41.6
Q ss_pred ChhHHHHHHHhcCCCCCCCCCCCCCcccCC--C------CCchhHHHHHhccC------------------CCCCCCCHH
Q 007126 2 SGARLCALLCELGYGGADSLDPDSFEWPFQ--Y------DDARPILDWICSSL------------------RPSNVLSLS 55 (617)
Q Consensus 2 ~g~~f~e~LkklGyp~a~~L~~e~fdWlf~--~------~e~~~FL~Wfc~nV------------------~~~NVLS~~ 55 (617)
+-.+|...|+.+|++.+ .+.+.++|. + -++..|+.++.... +.+..+|.+
T Consensus 46 ~~~el~~~l~~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~ 121 (169)
T 3qrx_A 46 DAKELKVAMRALGFEPK----KEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIK 121 (169)
T ss_dssp CHHHHHHHHHHTSCCCC----HHHHHHHHHHHCSSSSSSEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSBCHH
T ss_pred cHHHHHHHHHHcCCCCC----HHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHhcccCcHHHHHHHHHHhCCCCCCcCCHH
Confidence 34688888999988654 445555551 1 12566776665422 344455555
Q ss_pred HHhHHHHHHhcccCCChhhHHHHHhhcc
Q 007126 56 ELSQFEQFLQEEKLLEGEDLESAFDSIS 83 (617)
Q Consensus 56 EL~~f~~L~~sGkiLeg~~Ld~aL~~i~ 83 (617)
|+..+ |..-|..+..++++..++.+.
T Consensus 122 el~~~--l~~~g~~~~~~~~~~~~~~~D 147 (169)
T 3qrx_A 122 DLRRV--AKELGENLTEEELQEMIAEAD 147 (169)
T ss_dssp HHHHH--HHHTTCCCCHHHHHHHHHHHC
T ss_pred HHHHH--HHHcCCCCCHHHHHHHHHHhC
Confidence 55442 223344455555555555544
No 26
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Probab=20.39 E-value=64 Score=27.05 Aligned_cols=77 Identities=13% Similarity=0.069 Sum_probs=37.1
Q ss_pred ChhHHHHHHHhcCCCCCCCCCCCCCcccCCC----CCchhHHHHHhccCCCCCCCCHHH-HhHHHHHHhccc-CCChhhH
Q 007126 2 SGARLCALLCELGYGGADSLDPDSFEWPFQY----DDARPILDWICSSLRPSNVLSLSE-LSQFEQFLQEEK-LLEGEDL 75 (617)
Q Consensus 2 ~g~~f~e~LkklGyp~a~~L~~e~fdWlf~~----~e~~~FL~Wfc~nV~~~NVLS~~E-L~~f~~L~~sGk-iLeg~~L 75 (617)
+-.+|...|+.+|++.+ ++.+..+|.+ -++..|+.++.......+--...+ ..+|..+-..|. .++.+++
T Consensus 23 ~~~el~~~l~~~g~~~~----~~~~~~~~~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~el 98 (140)
T 1ggw_A 23 PKTSIGDLLRACGQNPT----LAEITEIESTLPAEVDMEQFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGEL 98 (140)
T ss_dssp CHHHHHHHHHHTSCCCC----HHHHHHHHTTSCSSEEHHHHHHHHCTTSSSSSSCCHHHHHHHHHTTCSSCSSCCCHHHH
T ss_pred CHHHHHHHHHHcCCCCC----HHHHHHHHhCCCCcCcHHHHHHHHHHHhcccCcccHHHHHHHHHHhCCCCCCcEeHHHH
Confidence 34678889999987643 3344445431 124556666554432211111122 223444444444 4555555
Q ss_pred HHHHhhc
Q 007126 76 ESAFDSI 82 (617)
Q Consensus 76 d~aL~~i 82 (617)
-.++..+
T Consensus 99 ~~~l~~~ 105 (140)
T 1ggw_A 99 RYVLTSL 105 (140)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 5555443
Done!