Query 007126
Match_columns 617
No_of_seqs 84 out of 86
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 17:49:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007126.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007126hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ggwa_ a.39.1.5 (A:) Cdc4p {F 58.5 2.7 0.0002 35.1 3.0 78 2-83 23-106 (140)
2 d2mysc_ a.39.1.5 (C:) Myosin R 55.3 3.5 0.00025 34.3 3.2 77 3-83 23-111 (145)
3 d1wdcb_ a.39.1.5 (B:) Myosin E 41.2 5.3 0.00038 33.2 2.0 76 2-83 25-106 (142)
4 d1wdcc_ a.39.1.5 (C:) Myosin R 26.3 11 0.00078 31.5 1.5 78 3-83 28-112 (152)
5 d1seta1 a.2.7.1 (A:1-110) Sery 24.8 1E+02 0.0073 24.3 7.4 23 165-187 76-98 (110)
6 d2j01f1 c.22.1.1 (F:1-208) Rib 20.6 24 0.0018 31.9 2.8 65 4-78 137-202 (208)
7 d1fxkc_ a.2.5.1 (C:) Prefoldin 18.8 97 0.0071 25.0 6.2 36 101-136 2-37 (133)
8 d2diia1 a.240.1.1 (A:8-55) TFI 16.7 30 0.0022 24.3 1.8 25 567-591 7-31 (48)
9 d2mysb_ a.39.1.5 (B:) Myosin E 13.6 42 0.0031 27.2 2.4 77 2-83 25-107 (145)
10 d2hf5a1 a.39.1.5 (A:81-113) Tr 12.8 60 0.0043 21.0 2.4 30 53-82 1-32 (33)
No 1
>d1ggwa_ a.39.1.5 (A:) Cdc4p {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=58.48 E-value=2.7 Score=35.13 Aligned_cols=78 Identities=13% Similarity=0.067 Sum_probs=55.4
Q ss_pred ChhHHHHHHHhcCCCCCCCCCCCCCcccCC----CCCchhHHHHHhccCCCCCCCCHHHH-hHHHHHHhccc-CCChhhH
Q 007126 2 SGARLCALLCELGYGGADSLDPDSFEWPFQ----YDDARPILDWICSSLRPSNVLSLSEL-SQFEQFLQEEK-LLEGEDL 75 (617)
Q Consensus 2 ~g~~f~e~LkklGyp~a~~L~~e~fdWlf~----~~e~~~FL~Wfc~nV~~~NVLS~~EL-~~f~~L~~sGk-iLeg~~L 75 (617)
+-.+|..+|+.+|++.+ ++.+.-+.. .-.+..|+.|+........--+.+++ ++|..+-..|. .++.++|
T Consensus 23 ~~~el~~~l~~lg~~~t----~~ei~~~~~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~l~~aF~~~D~d~~G~I~~~el 98 (140)
T d1ggwa_ 23 PKTSIGDLLRACGQNPT----LAEITEIESTLPAEVDMEQFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGEL 98 (140)
T ss_dssp CHHHHHHHHHHTSCCCC----HHHHHHHHTTSCSSEEHHHHHHHHCTTSSSSSSCCHHHHHHHHHTTCSSCSSCCCHHHH
T ss_pred CHHHHHHHHHHHHhhhH----HHhhhhhhccccccccchhhhhhhhhhhhcchhhHHHHHHHHHHHHhccCCCcchHHHH
Confidence 34689999999998765 222222221 22368899999877766655566666 46888887887 7888888
Q ss_pred HHHHhhcc
Q 007126 76 ESAFDSIS 83 (617)
Q Consensus 76 d~aL~~i~ 83 (617)
-.+|..+.
T Consensus 99 ~~~l~~~g 106 (140)
T d1ggwa_ 99 RYVLTSLG 106 (140)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcC
Confidence 88887765
No 2
>d2mysc_ a.39.1.5 (C:) Myosin Regulatory Chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=55.31 E-value=3.5 Score=34.27 Aligned_cols=77 Identities=9% Similarity=0.146 Sum_probs=54.4
Q ss_pred hhHHHHHHHhcCCCCCCCCCCCCCcccCC----------CCCchhHHHHHhccCCCCCCCCHHHH-hHHHHHHhccc-CC
Q 007126 3 GARLCALLCELGYGGADSLDPDSFEWPFQ----------YDDARPILDWICSSLRPSNVLSLSEL-SQFEQFLQEEK-LL 70 (617)
Q Consensus 3 g~~f~e~LkklGyp~a~~L~~e~fdWlf~----------~~e~~~FL~Wfc~nV~~~NVLS~~EL-~~f~~L~~sGk-iL 70 (617)
-.+|...|+.+|++.+ ++.+..++. .-++..|+.+++....+...-+.+++ .+|..+-..|. .+
T Consensus 23 ~~el~~~l~~lg~~~~----~~e~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~l~~aF~~~D~d~~G~I 98 (145)
T d2mysc_ 23 ASQVGDIARALGQNPT----NAEINKILGNPSKEEMNAAAITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTV 98 (145)
T ss_pred HHHHHHHHHHhhhcch----hhhhHHHHHHHhhcccccCccchhHHHHHHhhhhhccccchHHHHHHHHHHhhcCCCCEE
Confidence 3688999999998754 233333321 13567888888887776655555555 68888888888 78
Q ss_pred ChhhHHHHHhhcc
Q 007126 71 EGEDLESAFDSIS 83 (617)
Q Consensus 71 eg~~Ld~aL~~i~ 83 (617)
+-+++-.++.++.
T Consensus 99 ~~~el~~~l~~~g 111 (145)
T d2mysc_ 99 MGAELRHVLATLG 111 (145)
T ss_pred cHHHHHHHHHHhC
Confidence 8899988888764
No 3
>d1wdcb_ a.39.1.5 (B:) Myosin Essential Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=41.24 E-value=5.3 Score=33.23 Aligned_cols=76 Identities=16% Similarity=0.176 Sum_probs=53.6
Q ss_pred ChhHHHHHHHhcCCCCCCCCCCCCCcccCC----CCCchhHHHHHhccCCCCCCCCHHHHh-HHHHHHhccc-CCChhhH
Q 007126 2 SGARLCALLCELGYGGADSLDPDSFEWPFQ----YDDARPILDWICSSLRPSNVLSLSELS-QFEQFLQEEK-LLEGEDL 75 (617)
Q Consensus 2 ~g~~f~e~LkklGyp~a~~L~~e~fdWlf~----~~e~~~FL~Wfc~nV~~~NVLS~~EL~-~f~~L~~sGk-iLeg~~L 75 (617)
+-.+|..+|+.+|++.+ ++.+.=++. .-.+..|+.|++..+...+ +.+++. +|..+-+.|. -++-++|
T Consensus 25 ~~~el~~~l~~lg~~~~----~~el~~~~~~~~~~i~~~eF~~~~~~~~~~~~--~~~~l~~aF~~~D~d~~G~I~~~el 98 (142)
T d1wdcb_ 25 SKEDIKAISEQLGRAPD----DKELTAMLKEAPGPLNFTMFLSIFSDKLSGTD--SEETIRNAFAMFDEQETKKLNIEYI 98 (142)
T ss_dssp CHHHHHHHHHHHSSCCC----HHHHHHHHTTSSSCCCHHHHHHHHHHHTCSCC--CHHHHHHHHHTTCTTCCSCEEHHHH
T ss_pred ChHHHHHHHHHhhcCCC----HHHHHHHHHhccCccccccccccccccccccc--hhhhHHHhhhhhcccCCCcccHHHH
Confidence 34688999999998765 222333332 3457889999998776654 345554 6888878888 7888888
Q ss_pred HHHHhhcc
Q 007126 76 ESAFDSIS 83 (617)
Q Consensus 76 d~aL~~i~ 83 (617)
-.++.++.
T Consensus 99 ~~~l~~~g 106 (142)
T d1wdcb_ 99 KDLLENMG 106 (142)
T ss_dssp HHHHHHSS
T ss_pred HHHHHHcc
Confidence 88887765
No 4
>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=26.31 E-value=11 Score=31.47 Aligned_cols=78 Identities=12% Similarity=0.158 Sum_probs=51.1
Q ss_pred hhHHHHHHHhcCCCCCCC-CCCCCCcccCCC----CCchhHHHHHhccCCCCCCCCHHHH-hHHHHHHhccc-CCChhhH
Q 007126 3 GARLCALLCELGYGGADS-LDPDSFEWPFQY----DDARPILDWICSSLRPSNVLSLSEL-SQFEQFLQEEK-LLEGEDL 75 (617)
Q Consensus 3 g~~f~e~LkklGyp~a~~-L~~e~fdWlf~~----~e~~~FL~Wfc~nV~~~NVLS~~EL-~~f~~L~~sGk-iLeg~~L 75 (617)
-.+|..+|+.+||.-+.. +. .+-+.+.+ -++..|+.|+........ -+.+++ ++|..+-..|. .++-++|
T Consensus 28 ~~el~~~l~~lG~~~t~~e~~--~~~~~~~~~~~~i~~~eFl~~~~~~~~~~~-~~~~~l~~aF~~~D~~~~G~I~~~el 104 (152)
T d1wdcc_ 28 AFKLGDVCRCLGINPRNEDVF--AVGGTHKMGEKSLPFEEFLPAYEGLMDCEQ-GTFADYMEAFKTFDREGQGFISGAEL 104 (152)
T ss_dssp GGGHHHHHHHTTCCCCHHHHH--HTTCCSSTTSCEECHHHHHHHHHHHTTSCC-CCHHHHHHHHHTTCSSSSSEEEHHHH
T ss_pred HHHHHHHHHHhccCccHhhhh--hhhhhhccccccccccccccccccccccch-hHHHhhhhhhhccccccCccchHHHH
Confidence 468999999999975421 11 13344422 246789998877554433 234444 58888877777 7888888
Q ss_pred HHHHhhcc
Q 007126 76 ESAFDSIS 83 (617)
Q Consensus 76 d~aL~~i~ 83 (617)
-.++.++.
T Consensus 105 ~~~l~~~g 112 (152)
T d1wdcc_ 105 RHVLTALG 112 (152)
T ss_dssp HHHHHHSS
T ss_pred HHHHHHcC
Confidence 88887764
No 5
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=24.85 E-value=1e+02 Score=24.33 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=12.4
Q ss_pred hhHHhHHhHHHHHHHHHHHHHHh
Q 007126 165 LSARNLQMNDVLGRIASTAQELA 187 (617)
Q Consensus 165 L~~~n~k~n~~L~~l~~~v~~L~ 187 (617)
+......+...+..+-+....+.
T Consensus 76 lk~~i~~le~~~~~~~~~l~~~l 98 (110)
T d1seta1 76 LGEEAKRLEEALREKEARLEALL 98 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555554
No 6
>d2j01f1 c.22.1.1 (F:1-208) Ribosomal protein L4 {Thermus thermophilus [TaxId: 274]}
Probab=20.63 E-value=24 Score=31.86 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=49.2
Q ss_pred hHHHHHHHhcCCCCCCCCCCCCCcccCCCCCchhHHHHHhccCCCCCCCCHHHHhHHHHHHhccc-CCChhhHHHH
Q 007126 4 ARLCALLCELGYGGADSLDPDSFEWPFQYDDARPILDWICSSLRPSNVLSLSELSQFEQFLQEEK-LLEGEDLESA 78 (617)
Q Consensus 4 ~~f~e~LkklGyp~a~~L~~e~fdWlf~~~e~~~FL~Wfc~nV~~~NVLS~~EL~~f~~L~~sGk-iLeg~~Ld~a 78 (617)
++|++.|+++|+++... =|+.+++ +. +..-|.|+..-+|++..+|..|+-| +.++ +++.++++.-
T Consensus 137 K~~~~~L~~l~l~~~~~-------vl~v~~~-en-~~~s~rNi~~v~v~~~~~lNv~dlL-~~~~lvit~~Al~~L 202 (208)
T d2j01f1 137 KEFLAWAKEAGLDGSES-------VLLVTGN-EL-VRRAARNLPWVVTLAPEGLNVYDIV-RTERLVMDLDAWEVF 202 (208)
T ss_dssp HHHHHHHHHHTCCSSSC-------EEEECSC-HH-HHHHHTTCTTEEEECGGGCCHHHHH-HSSEEEEEHHHHHHH
T ss_pred HHHHHHHHHhccccccc-------eeeccch-hH-HHHHHhCCCCCEEeecCCccHHHHh-cCCcEEEEHHHHHHH
Confidence 58999999999887622 1343332 33 5578899999999999999999887 6777 6888887654
No 7
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=18.76 E-value=97 Score=25.03 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 007126 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAH 136 (617)
Q Consensus 101 ~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~ 136 (617)
+|++|...++.|+.++..++.++..+...+..++..
T Consensus 2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~ 37 (133)
T d1fxkc_ 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEIL 37 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777666655554444
No 8
>d2diia1 a.240.1.1 (A:8-55) TFIIH basal transcription factor complex p62 subunit, BTF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.69 E-value=30 Score=24.30 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=20.2
Q ss_pred HHHHhHHHhhhcCChhhhhhhhhhh
Q 007126 567 LEHCKKNEIIKHHSQEVGLQRRVFV 591 (617)
Q Consensus 567 ~~~~~Kr~~L~~~~~~~~~eR~lyV 591 (617)
+|.+.|.++|+.||-+.|.=|.|-|
T Consensus 7 keLeEKnr~L~enp~L~qLYkdLVv 31 (48)
T d2diia1 7 KELEEKNRMLQEDPVLFQLYKDLVV 31 (48)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHT
T ss_pred HHHHHHhhccccCHHHHHHHHHHHH
Confidence 4677999999999888877676655
No 9
>d2mysb_ a.39.1.5 (B:) Myosin Essential Chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=13.64 E-value=42 Score=27.22 Aligned_cols=77 Identities=10% Similarity=0.092 Sum_probs=47.6
Q ss_pred ChhHHHHHHHhcCCCCCCCCCCCCCcccC----CCCCchhHHHHHhccCCCCCCCCHHHH-hHHHHHHhccc-CCChhhH
Q 007126 2 SGARLCALLCELGYGGADSLDPDSFEWPF----QYDDARPILDWICSSLRPSNVLSLSEL-SQFEQFLQEEK-LLEGEDL 75 (617)
Q Consensus 2 ~g~~f~e~LkklGyp~a~~L~~e~fdWlf----~~~e~~~FL~Wfc~nV~~~NVLS~~EL-~~f~~L~~sGk-iLeg~~L 75 (617)
+..+|..+|+.+|+.... ++.++=.+ ..-++..|+.++.......+ +++++ .+|..+-..|+ .++-+++
T Consensus 25 ~~~e~~~~l~~lg~~~~~---~~~~~~~~~~~~g~i~~~eF~~~~~~~~~~~~--~~~~l~~aF~~fD~~~~g~I~~~el 99 (145)
T d2mysb_ 25 DKDDLRETFAAMGRLNVK---NEELDAMIKEASGPINFTVFLTMFGEKLKGAD--PEDVIMGAFKVLDPDGKGSIKKSFL 99 (145)
T ss_pred CHHHHHHHHHHhCCCcch---HHHHHHHHHhccCceeechhhhhhhhcccccc--hHHHHHHHHHhhhhcccchhhHHHH
Confidence 456888899999864431 12121111 12346788887776544322 33333 47888878888 7888888
Q ss_pred HHHHhhcc
Q 007126 76 ESAFDSIS 83 (617)
Q Consensus 76 d~aL~~i~ 83 (617)
-.++.++.
T Consensus 100 ~~~l~~~g 107 (145)
T d2mysb_ 100 EELLTTGG 107 (145)
T ss_pred HHHHHHcC
Confidence 88887765
No 10
>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}
Probab=12.77 E-value=60 Score=20.96 Aligned_cols=30 Identities=17% Similarity=0.389 Sum_probs=22.0
Q ss_pred CHHHH-hHHHHHHhccc-CCChhhHHHHHhhc
Q 007126 53 SLSEL-SQFEQFLQEEK-LLEGEDLESAFDSI 82 (617)
Q Consensus 53 S~~EL-~~f~~L~~sGk-iLeg~~Ld~aL~~i 82 (617)
|++|+ ++|..+-+.|. ..+..+|-.++.++
T Consensus 1 seeel~eAF~~FDkDg~G~Is~~EL~~vm~~l 32 (33)
T d2hf5a1 1 SEEEIREAFRVFDKDGNGYISAAELRHVMTNL 32 (33)
T ss_dssp CHHHHHHHHHHHSSSCCSCBCHHHHHHHTTSC
T ss_pred CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHc
Confidence 45555 47888888888 78888888777653
Done!