BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007127
(617 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 218 HGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRRC 267
+GP +++R+++ I GEE+T+ Y D+L R+ +L +Y F C C RC
Sbjct: 219 NGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRC 268
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 218 HGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRRC 267
+GP +++R+++ I GEE+T+ Y D+L R+ +L +Y F C C RC
Sbjct: 217 NGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRC 266
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 218 HGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRRC 267
+GP +++R+++ I GEE+T+ Y D+L R+ +L +Y F C C RC
Sbjct: 218 NGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRC 267
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 218 HGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRRC 267
+GP +++R+++ I GEE+T+ Y D+L R+ +L +Y F C C RC
Sbjct: 217 NGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRC 266
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 218 HGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRRC 267
+GP +++R+++ I GEE+T+ Y D+L R+ +L +Y F C C RC
Sbjct: 253 NGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRC 302
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 218 HGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRRC 267
+GP +++R+++ I GEE+T+ Y D L R+ +L +Y F C C RC
Sbjct: 218 NGPHLLLRAVRDIEVGEELTICYLDXLXTSEERRKQLRDQYCFECDCFRC 267
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 52/141 (36%), Gaps = 51/141 (36%)
Query: 128 VMTNAVEVQDDKTGRILGIAVYDKDFSWINHSCSPNACYRFSLSEPNAPSFRNEKKMRIA 187
V N ++D++ LG A++ D + +NHSC PN
Sbjct: 179 VNCNGFTIEDEELSH-LGSAIF-PDVALMNHSCCPNVI---------------------- 214
Query: 188 PHVVFDSTEAETPGKSDVCISCELKEGSKRHGPRIIVRSIKPINKGEEVTVAYTDLLQPK 247
V + T AE VR+++ I+ G+EV +Y DLL P
Sbjct: 215 --VTYKGTLAE-------------------------VRAVQEIHPGDEVFTSYIDLLYPT 247
Query: 248 GMRQSELWSKYQFVCHCRRCS 268
R L Y F C CR C+
Sbjct: 248 EDRNDRLRDSYFFTCECRECT 268
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 51/141 (36%), Gaps = 51/141 (36%)
Query: 128 VMTNAVEVQDDKTGRILGIAVYDKDFSWINHSCSPNACYRFSLSEPNAPSFRNEKKMRIA 187
V N ++D++ LG A++ D + +NHSC PN
Sbjct: 179 VNCNGFTIEDEELSH-LGSAIF-PDVALMNHSCCPNVI---------------------- 214
Query: 188 PHVVFDSTEAETPGKSDVCISCELKEGSKRHGPRIIVRSIKPINKGEEVTVAYTDLLQPK 247
V + T AE VR+++ I GEEV +Y DLL P
Sbjct: 215 --VTYKGTLAE-------------------------VRAVQEIKPGEEVFTSYIDLLYPT 247
Query: 248 GMRQSELWSKYQFVCHCRRCS 268
R L Y F C C+ C+
Sbjct: 248 EDRNDRLRDSYFFTCECQECT 268
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 51/141 (36%), Gaps = 51/141 (36%)
Query: 128 VMTNAVEVQDDKTGRILGIAVYDKDFSWINHSCSPNACYRFSLSEPNAPSFRNEKKMRIA 187
V N ++D++ LG A++ D + +NHSC PN
Sbjct: 179 VNCNGFTIEDEELSH-LGSAIF-PDVALMNHSCCPNVI---------------------- 214
Query: 188 PHVVFDSTEAETPGKSDVCISCELKEGSKRHGPRIIVRSIKPINKGEEVTVAYTDLLQPK 247
V + T AE VR+++ I GEEV +Y DLL P
Sbjct: 215 --VTYKGTLAE-------------------------VRAVQEIKPGEEVFTSYIDLLYPT 247
Query: 248 GMRQSELWSKYQFVCHCRRCS 268
R L Y F C C+ C+
Sbjct: 248 EDRNDRLRDSYFFTCECQECT 268
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 51/141 (36%), Gaps = 51/141 (36%)
Query: 128 VMTNAVEVQDDKTGRILGIAVYDKDFSWINHSCSPNACYRFSLSEPNAPSFRNEKKMRIA 187
V N ++D++ LG A++ D + +NHSC PN
Sbjct: 179 VNCNGFTIEDEELSH-LGSAIF-PDVALMNHSCCPNVI---------------------- 214
Query: 188 PHVVFDSTEAETPGKSDVCISCELKEGSKRHGPRIIVRSIKPINKGEEVTVAYTDLLQPK 247
V + T AE VR+++ I GEEV +Y DLL P
Sbjct: 215 --VTYKGTLAE-------------------------VRAVQEIKPGEEVFTSYIDLLYPT 247
Query: 248 GMRQSELWSKYQFVCHCRRCS 268
R L Y F C C+ C+
Sbjct: 248 EDRNDRLRDSYFFTCECQECT 268
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone
Methyltransferase Smyd1
Length = 490
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 221 RIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRRCSASPPSYVDMALE 280
RI +R++ I++GEE+TV+Y D L R+ +L +Y F C C C + +A +
Sbjct: 233 RIELRALGKISEGEELTVSYIDFLHLSEERRRQLKKQYYFDCSCEHCQKGLKDDLFLAAK 292
Query: 281 E 281
E
Sbjct: 293 E 293
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,650,647
Number of Sequences: 62578
Number of extensions: 640766
Number of successful extensions: 1178
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1153
Number of HSP's gapped (non-prelim): 26
length of query: 617
length of database: 14,973,337
effective HSP length: 105
effective length of query: 512
effective length of database: 8,402,647
effective search space: 4302155264
effective search space used: 4302155264
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)