Query 007127
Match_columns 617
No_of_seqs 250 out of 1458
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 19:18:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007127.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007127hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2084 Predicted histone tail 99.6 5.7E-14 1.2E-18 150.1 21.8 98 124-272 175-277 (482)
2 PF00856 SET: SET domain; Int 99.5 1.2E-13 2.6E-18 124.2 10.4 68 127-241 95-162 (162)
3 smart00317 SET SET (Su(var)3-9 98.8 3.1E-09 6.6E-14 92.2 3.8 45 151-240 72-116 (116)
4 KOG2589 Histone tail methylase 98.0 5.9E-06 1.3E-10 88.2 5.3 88 124-271 170-257 (453)
5 COG2940 Proteins containing SE 97.5 5.2E-05 1.1E-09 84.4 3.4 51 220-270 428-478 (480)
6 KOG4442 Clathrin coat binding 97.1 0.00054 1.2E-08 78.4 5.1 29 220-248 216-244 (729)
7 KOG1080 Histone H3 (Lys4) meth 96.7 0.00096 2.1E-08 80.0 3.3 26 220-245 962-987 (1005)
8 KOG1082 Histone H3 (Lys9) meth 96.0 0.0041 8.8E-08 67.3 2.9 25 220-244 299-323 (364)
9 KOG1141 Predicted histone meth 94.3 0.023 5E-07 66.5 2.3 40 219-266 1215-1254(1262)
10 KOG1337 N-methyltransferase [G 93.7 0.08 1.7E-06 59.1 5.0 84 123-261 204-291 (472)
11 KOG1083 Putative transcription 91.9 0.14 3E-06 61.7 3.7 23 220-242 1273-1295(1306)
12 KOG1085 Predicted methyltransf 89.1 0.24 5.2E-06 52.5 2.2 26 219-244 355-380 (392)
13 KOG1338 Uncharacterized conser 77.2 13 0.00028 41.5 9.2 71 124-244 182-262 (466)
14 KOG1079 Transcriptional repres 73.9 2.7 5.9E-05 49.1 3.2 23 221-243 689-711 (739)
15 cd05510 Bromo_SPT7_like Bromod 68.6 4 8.8E-05 37.5 2.6 49 487-535 4-57 (112)
16 cd05508 Bromo_RACK7 Bromodomai 64.6 7.1 0.00015 35.1 3.3 85 491-609 4-93 (99)
17 KOG1081 Transcription factor N 52.6 5.9 0.00013 44.8 0.8 26 218-243 392-417 (463)
18 cd05507 Bromo_brd8_like Bromod 50.3 26 0.00057 31.5 4.5 82 493-607 6-92 (104)
19 cd05497 Bromo_Brdt_I_like Brom 50.0 19 0.00042 32.7 3.6 86 489-607 4-96 (107)
20 KOG2461 Transcription factor B 48.9 14 0.0003 41.2 2.9 28 218-245 120-147 (396)
21 TIGR02059 swm_rep_I cyanobacte 42.4 28 0.0006 32.0 3.3 25 220-244 75-99 (101)
22 cd05505 Bromo_WSTF_like Bromod 41.3 27 0.00058 31.3 3.1 79 495-606 5-88 (97)
23 cd05503 Bromo_BAZ2A_B_like Bro 40.8 19 0.00042 31.9 2.1 79 494-605 4-87 (97)
24 smart00317 SET SET (Su(var)3-9 39.0 17 0.00037 31.1 1.4 24 1-25 12-35 (116)
25 cd05516 Bromo_SNF2L2 Bromodoma 36.8 27 0.00059 31.6 2.4 28 508-535 24-56 (107)
26 PF09889 DUF2116: Uncharacteri 36.6 12 0.00025 31.2 -0.0 19 32-50 3-25 (59)
27 cd05494 Bromodomain_1 Bromodom 33.2 30 0.00064 32.0 2.1 40 495-534 5-53 (114)
28 cd05498 Bromo_Brdt_II_like Bro 30.1 36 0.00079 30.2 2.1 82 494-607 4-94 (102)
29 cd05515 Bromo_polybromo_V Brom 29.7 38 0.00083 30.5 2.1 43 493-535 3-55 (105)
30 cd05496 Bromo_WDR9_II Bromodom 29.0 43 0.00094 31.2 2.4 46 489-535 4-54 (119)
31 cd05504 Bromo_Acf1_like Bromod 28.7 39 0.00085 31.1 2.1 81 492-605 14-99 (115)
32 cd05492 Bromo_ZMYND11 Bromodom 26.7 32 0.0007 31.7 1.1 60 518-609 38-97 (109)
33 cd05499 Bromo_BDF1_2_II Bromod 26.3 47 0.001 29.5 2.1 42 494-535 4-54 (102)
34 cd05506 Bromo_plant1 Bromodoma 24.9 51 0.0011 29.0 2.0 42 493-535 3-51 (99)
35 PF08666 SAF: SAF domain; Int 23.1 48 0.001 26.2 1.4 15 223-237 3-17 (63)
36 smart00297 BROMO bromo domain. 21.4 73 0.0016 27.8 2.3 88 488-608 5-97 (107)
37 cd05502 Bromo_tif1_like Bromod 21.3 72 0.0016 28.8 2.3 85 493-607 7-95 (109)
38 cd05495 Bromo_cbp_like Bromodo 20.4 86 0.0019 28.5 2.6 46 490-535 3-55 (108)
No 1
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=99.61 E-value=5.7e-14 Score=150.13 Aligned_cols=98 Identities=30% Similarity=0.504 Sum_probs=81.7
Q ss_pred HHHhhhcceeeeecCCCCc----eeEEEEeccccccccCcCCCCceeeccCCCCCCCcccchhhhccCCcccccCcccCC
Q 007127 124 ALCLVMTNAVEVQDDKTGR----ILGIAVYDKDFSWINHSCSPNACYRFSLSEPNAPSFRNEKKMRIAPHVVFDSTEAET 199 (617)
Q Consensus 124 ~l~~v~tNsf~v~~~~~g~----~lGiavY~P~~S~~NHSC~PNa~~~F~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ 199 (617)
++..+..|++.+.+. ... .+|.|+| |..+++||||.||+...|.
T Consensus 175 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~~~~~hsC~pn~~~~~~------------------------------ 222 (482)
T KOG2084|consen 175 LFPSLLCNSITNASS-LRVPEPLFLGRGLF-PGSSLFNHSCFPNISVIFD------------------------------ 222 (482)
T ss_pred HHHHHHHhhhhhhhh-hhccccccceeeec-ccchhcccCCCCCeEEEEC------------------------------
Confidence 566666777777665 333 4889999 9999999999999997763
Q ss_pred CCCCCccchhccccCcCCCCCEEEEEEecCCCCCC-eEEEeccCCCCCHHHHHHHHhcCCCeeEeCcCCCCCCC
Q 007127 200 PGKSDVCISCELKEGSKRHGPRIIVRSIKPINKGE-EVTVAYTDLLQPKGMRQSELWSKYQFVCHCRRCSASPP 272 (617)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~G~~~~VrAir~I~~GE-EItisYidll~p~~~Rq~~L~~~y~F~C~C~rC~~~~~ 272 (617)
|....+++...+.+++ |++++|++.++++..||..|+..|.|.|.|+||.++.+
T Consensus 223 -------------------~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~~~l~~~~~f~c~c~rc~d~~~ 277 (482)
T KOG2084|consen 223 -------------------GRGLALLVPAGIDAGEEELTISYTDPLLSTASRQKQLRQSKLFSCQCPRCLDPTE 277 (482)
T ss_pred -------------------CceeEEEeecccCCCCCEEEEeecccccCHHHHHHHHhhccceeeecCCCCCCCc
Confidence 4456677778887776 99999999999999999999999999999999997655
No 2
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.49 E-value=1.2e-13 Score=124.18 Aligned_cols=68 Identities=29% Similarity=0.477 Sum_probs=50.5
Q ss_pred hhhcceeeeecCCCCceeEEEEeccccccccCcCCCCceeeccCCCCCCCcccchhhhccCCcccccCcccCCCCCCCcc
Q 007127 127 LVMTNAVEVQDDKTGRILGIAVYDKDFSWINHSCSPNACYRFSLSEPNAPSFRNEKKMRIAPHVVFDSTEAETPGKSDVC 206 (617)
Q Consensus 127 ~v~tNsf~v~~~~~g~~lGiavY~P~~S~~NHSC~PNa~~~F~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~ 206 (617)
............ .....+.++| |.++++||||.||+.+.|+..
T Consensus 95 ~~~~~~~~~~~~-~~~~~~~~l~-p~~d~~NHsc~pn~~~~~~~~----------------------------------- 137 (162)
T PF00856_consen 95 WTRSDFSSRSFS-EDDRDGIALY-PFADMLNHSCDPNCEVSFDFD----------------------------------- 137 (162)
T ss_dssp HHHHEEEEEEET-TEEEEEEEEE-TGGGGSEEESSTSEEEEEEEE-----------------------------------
T ss_pred ccceeeeccccc-cccccccccC-cHhHheccccccccceeeEee-----------------------------------
Confidence 334444444444 4455678999 999999999999999998521
Q ss_pred chhccccCcCCCCCEEEEEEecCCCCCCeEEEecc
Q 007127 207 ISCELKEGSKRHGPRIIVRSIKPINKGEEVTVAYT 241 (617)
Q Consensus 207 ~~~~~~~~~~~~G~~~~VrAir~I~~GEEItisYi 241 (617)
..+..++|+|.|+|++||||||+|.
T Consensus 138 ----------~~~~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 138 ----------GDGGCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp ----------TTTTEEEEEESS-B-TTSBEEEEST
T ss_pred ----------cccceEEEEECCccCCCCEEEEEEC
Confidence 1356899999999999999999995
No 3
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=98.81 E-value=3.1e-09 Score=92.24 Aligned_cols=45 Identities=36% Similarity=0.631 Sum_probs=38.2
Q ss_pred cccccccCcCCCCceeeccCCCCCCCcccchhhhccCCcccccCcccCCCCCCCccchhccccCcCCCCCEEEEEEecCC
Q 007127 151 KDFSWINHSCSPNACYRFSLSEPNAPSFRNEKKMRIAPHVVFDSTEAETPGKSDVCISCELKEGSKRHGPRIIVRSIKPI 230 (617)
Q Consensus 151 P~~S~~NHSC~PNa~~~F~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~VrAir~I 230 (617)
|.++++||||.||+.+.++... ...++.++|+|+|
T Consensus 72 ~~~~~iNHsc~pN~~~~~~~~~---------------------------------------------~~~~~~~~a~r~I 106 (116)
T smart00317 72 NIARFINHSCEPNCELLFVEVN---------------------------------------------GDSRIVIFALRDI 106 (116)
T ss_pred cHHHeeCCCCCCCEEEEEEEEC---------------------------------------------CCcEEEEEECCCc
Confidence 8899999999999998885210 1127999999999
Q ss_pred CCCCeEEEec
Q 007127 231 NKGEEVTVAY 240 (617)
Q Consensus 231 ~~GEEItisY 240 (617)
++|||||++|
T Consensus 107 ~~GeEi~i~Y 116 (116)
T smart00317 107 KPGEELTIDY 116 (116)
T ss_pred CCCCEEeecC
Confidence 9999999999
No 4
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=98.01 E-value=5.9e-06 Score=88.19 Aligned_cols=88 Identities=24% Similarity=0.349 Sum_probs=61.3
Q ss_pred HHHhhhcceeeeecCCCCceeEEEEeccccccccCcCCCCceeeccCCCCCCCcccchhhhccCCcccccCcccCCCCCC
Q 007127 124 ALCLVMTNAVEVQDDKTGRILGIAVYDKDFSWINHSCSPNACYRFSLSEPNAPSFRNEKKMRIAPHVVFDSTEAETPGKS 203 (617)
Q Consensus 124 ~l~~v~tNsf~v~~~~~g~~lGiavY~P~~S~~NHSC~PNa~~~F~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~ 203 (617)
++-+---|-|.|.-+...+..-. ..+| +++|||+|.||+. |+..
T Consensus 170 ~ll~~g~nDFSvmyStRk~caqL-wLGP-aafINHDCrpnCk--Fvs~-------------------------------- 213 (453)
T KOG2589|consen 170 SLLRGGGNDFSVMYSTRKRCAQL-WLGP-AAFINHDCRPNCK--FVST-------------------------------- 213 (453)
T ss_pred HHHhccCCceeeeeecccchhhh-eecc-HHhhcCCCCCCce--eecC--------------------------------
Confidence 45555578888876622222111 1246 7789999999996 5411
Q ss_pred CccchhccccCcCCCCCEEEEEEecCCCCCCeEEEeccCCCCCHHHHHHHHhcCCCeeEeCcCCCCCC
Q 007127 204 DVCISCELKEGSKRHGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRRCSASP 271 (617)
Q Consensus 204 ~~~~~~~~~~~~~~~G~~~~VrAir~I~~GEEItisYidll~p~~~Rq~~L~~~y~F~C~C~rC~~~~ 271 (617)
++.+.-|+++|||+||||||.=|.+..-. .-.-.|.|.-|....
T Consensus 214 --------------g~~tacvkvlRDIePGeEITcFYgs~fFG----------~~N~~CeC~TCER~g 257 (453)
T KOG2589|consen 214 --------------GRDTACVKVLRDIEPGEEITCFYGSGFFG----------ENNEECECVTCERRG 257 (453)
T ss_pred --------------CCceeeeehhhcCCCCceeEEeecccccC----------CCCceeEEeeccccc
Confidence 34688999999999999999999986542 233589999997644
No 5
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=97.54 E-value=5.2e-05 Score=84.35 Aligned_cols=51 Identities=27% Similarity=0.424 Sum_probs=42.3
Q ss_pred CEEEEEEecCCCCCCeEEEeccCCCCCHHHHHHHHhcCCCeeEeCcCCCCC
Q 007127 220 PRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRRCSAS 270 (617)
Q Consensus 220 ~~~~VrAir~I~~GEEItisYidll~p~~~Rq~~L~~~y~F~C~C~rC~~~ 270 (617)
.++.++|+|+|++||||++.|...+.-...+...+...++..|.|.+|+..
T Consensus 428 ~~~~~~~~rDI~~geEl~~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (480)
T COG2940 428 FKISIYAIRDIKAGEELTYDYGPSLEDNRELKKLLEKRWGCACGEDRCSHT 478 (480)
T ss_pred ceeeecccccchhhhhhccccccccccchhhhhhhhhhhccccCCCccCCC
Confidence 478899999999999999999998864443456677788999999999764
No 6
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.00054 Score=78.39 Aligned_cols=29 Identities=28% Similarity=0.246 Sum_probs=23.8
Q ss_pred CEEEEEEecCCCCCCeEEEeccCCCCCHH
Q 007127 220 PRIIVRSIKPINKGEEVTVAYTDLLQPKG 248 (617)
Q Consensus 220 ~~~~VrAir~I~~GEEItisYidll~p~~ 248 (617)
.+|=+-|.|.|+||||||..|--..+.+.
T Consensus 216 lRvGiFakk~I~~GEEITFDYqf~rYGr~ 244 (729)
T KOG4442|consen 216 LRVGIFAKKVIKPGEEITFDYQFDRYGRD 244 (729)
T ss_pred eEEEEeEecccCCCceeeEeccccccccc
Confidence 46778899999999999999987665544
No 7
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=96.72 E-value=0.00096 Score=80.05 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=22.9
Q ss_pred CEEEEEEecCCCCCCeEEEeccCCCC
Q 007127 220 PRIIVRSIKPINKGEEVTVAYTDLLQ 245 (617)
Q Consensus 220 ~~~~VrAir~I~~GEEItisYidll~ 245 (617)
.++++.|.|+|.+|||||..|--...
T Consensus 962 ~~IvIyakr~I~~~EElTYDYkF~~e 987 (1005)
T KOG1080|consen 962 KRIVIYSKRDIAAGEELTYDYKFPTE 987 (1005)
T ss_pred eEEEEEEecccccCceeeeecccccc
Confidence 59999999999999999999976543
No 8
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=96.02 E-value=0.0041 Score=67.26 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.5
Q ss_pred CEEEEEEecCCCCCCeEEEeccCCC
Q 007127 220 PRIIVRSIKPINKGEEVTVAYTDLL 244 (617)
Q Consensus 220 ~~~~VrAir~I~~GEEItisYidll 244 (617)
+++.+-|.++|.||+|+|..|....
T Consensus 299 ~~i~ffa~~~I~p~~ELT~dYg~~~ 323 (364)
T KOG1082|consen 299 LRIGFFALRDISPGEELTLDYGKAY 323 (364)
T ss_pred heeeeeeccccCCCcccchhhcccc
Confidence 4788999999999999999999764
No 9
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=94.33 E-value=0.023 Score=66.46 Aligned_cols=40 Identities=23% Similarity=0.347 Sum_probs=30.4
Q ss_pred CCEEEEEEecCCCCCCeEEEeccCCCCCHHHHHHHHhcCCCeeEeCcC
Q 007127 219 GPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRR 266 (617)
Q Consensus 219 G~~~~VrAir~I~~GEEItisYidll~p~~~Rq~~L~~~y~F~C~C~r 266 (617)
=|+|.+-+-|.|++|+|+|..|-...-.++ .....|+|..
T Consensus 1215 fPwVAFFt~kyVkAgtELTWDY~Ye~g~v~--------~keL~C~CGa 1254 (1262)
T KOG1141|consen 1215 FPWVAFFTRKYVKAGTELTWDYQYEQGQVA--------TKELTCHCGA 1254 (1262)
T ss_pred CchhhhhhhhhhccCceeeeeccccccccc--------cceEEEecCh
Confidence 467778888999999999999987654333 3556888863
No 10
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=93.70 E-value=0.08 Score=59.13 Aligned_cols=84 Identities=20% Similarity=0.196 Sum_probs=59.8
Q ss_pred HHHHhhhcceeeeecCC----CCceeEEEEeccccccccCcCCCCceeeccCCCCCCCcccchhhhccCCcccccCcccC
Q 007127 123 AALCLVMTNAVEVQDDK----TGRILGIAVYDKDFSWINHSCSPNACYRFSLSEPNAPSFRNEKKMRIAPHVVFDSTEAE 198 (617)
Q Consensus 123 ~~l~~v~tNsf~v~~~~----~g~~lGiavY~P~~S~~NHSC~PNa~~~F~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 198 (617)
.+++.+.+.+|...... +...-=.++. |.+-+.||+|.+.... |.
T Consensus 204 w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~-P~~D~~NH~~~~~~~~-~~----------------------------- 252 (472)
T KOG1337|consen 204 WAYSIVNSRAFYLPSLQRLTAGDPDDNEALA-PLIDLLNHSPEVIKAG-YN----------------------------- 252 (472)
T ss_pred HHHHHHhhhhhccccccccccCCCCcchhhh-hhHHhhccCchhcccc-cc-----------------------------
Confidence 37888899999887652 1111113566 9999999999993221 11
Q ss_pred CCCCCCccchhccccCcCCCCCEEEEEEecCCCCCCeEEEeccCCCCCHHHHHHHHhcCCCee
Q 007127 199 TPGKSDVCISCELKEGSKRHGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFV 261 (617)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~G~~~~VrAir~I~~GEEItisYidll~p~~~Rq~~L~~~y~F~ 261 (617)
...+.+.+.+.++|++||||+|+|...- +.+|-..|||.
T Consensus 253 ------------------~~d~~~~l~~~~~v~~geevfi~YG~~~------N~eLL~~YGFv 291 (472)
T KOG1337|consen 253 ------------------QEDEAVELVAERDVSAGEEVFINYGPKS------NAELLLHYGFV 291 (472)
T ss_pred ------------------CCCCcEEEEEeeeecCCCeEEEecCCCc------hHHHHHhcCCC
Confidence 0123788999999999999999999833 34666789997
No 11
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=91.88 E-value=0.14 Score=61.67 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.6
Q ss_pred CEEEEEEecCCCCCCeEEEeccC
Q 007127 220 PRIIVRSIKPINKGEEVTVAYTD 242 (617)
Q Consensus 220 ~~~~VrAir~I~~GEEItisYid 242 (617)
.|+.|.|.|||.+|||||.-|=.
T Consensus 1273 ~Rv~L~A~rDi~kGEELtYDYN~ 1295 (1306)
T KOG1083|consen 1273 YRVGLFALRDLPKGEELTYDYNF 1295 (1306)
T ss_pred eeeeeeecCCCCCCceEEEeccc
Confidence 58999999999999999999743
No 12
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=89.07 E-value=0.24 Score=52.53 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=23.5
Q ss_pred CCEEEEEEecCCCCCCeEEEeccCCC
Q 007127 219 GPRIIVRSIKPINKGEEVTVAYTDLL 244 (617)
Q Consensus 219 G~~~~VrAir~I~~GEEItisYidll 244 (617)
-|.+++.|-++|.+|||++..|.|--
T Consensus 355 ~pHLiLvA~rdIa~GEELlYDYGDRS 380 (392)
T KOG1085|consen 355 SPHLILVARRDIAQGEELLYDYGDRS 380 (392)
T ss_pred CceEEEEeccccccchhhhhhccccc
Confidence 46899999999999999999999953
No 13
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.16 E-value=13 Score=41.52 Aligned_cols=71 Identities=20% Similarity=0.136 Sum_probs=47.7
Q ss_pred HHHhhhcceeeeecCC---------CCceeEEEEeccccccccCcCC-CCceeeccCCCCCCCcccchhhhccCCccccc
Q 007127 124 ALCLVMTNAVEVQDDK---------TGRILGIAVYDKDFSWINHSCS-PNACYRFSLSEPNAPSFRNEKKMRIAPHVVFD 193 (617)
Q Consensus 124 ~l~~v~tNsf~v~~~~---------~g~~lGiavY~P~~S~~NHSC~-PNa~~~F~~~~~~~~~~~~~~~~~~~P~~~~~ 193 (617)
+.+.+..=+|.|.-.. +....|-.. .|...++||+=. -|+..+|+
T Consensus 182 ~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m-~p~ad~lNhd~~k~nanl~y~------------------------ 236 (466)
T KOG1338|consen 182 AYALGLAYSFDVEFLLSLDNLEEESEIECNGKLM-TPIADFLNHDGLKANANLRYE------------------------ 236 (466)
T ss_pred HHHHHHHHheeeehhcchhhhhhhhccccCcccc-cchhhhhccchhhcccceecc------------------------
Confidence 5666777778775320 112234333 388999999866 56665653
Q ss_pred CcccCCCCCCCccchhccccCcCCCCCEEEEEEecCCCCCCeEEEeccCCC
Q 007127 194 STEAETPGKSDVCISCELKEGSKRHGPRIIVRSIKPINKGEEVTVAYTDLL 244 (617)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~VrAir~I~~GEEItisYidll 244 (617)
..-+.+.|.|+|.|||||.-+|.--.
T Consensus 237 -------------------------~NcL~mva~r~iekgdev~n~dg~~p 262 (466)
T KOG1338|consen 237 -------------------------DNCLEMVADRNIEKGDEVDNSDGLKP 262 (466)
T ss_pred -------------------------CcceeeeecCCCCCccccccccccCc
Confidence 12568899999999999999997433
No 14
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=73.86 E-value=2.7 Score=49.10 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.4
Q ss_pred EEEEEEecCCCCCCeEEEeccCC
Q 007127 221 RIIVRSIKPINKGEEVTVAYTDL 243 (617)
Q Consensus 221 ~~~VrAir~I~~GEEItisYidl 243 (617)
++=++|.|.|.+|||||..|-.-
T Consensus 689 RIGifAkRaIeagEELffDYrYs 711 (739)
T KOG1079|consen 689 RIGIFAKRAIEAGEELFFDYRYS 711 (739)
T ss_pred ceeeeehhhcccCceeeeeeccC
Confidence 56699999999999999999764
No 15
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=68.57 E-value=4 Score=37.49 Aligned_cols=49 Identities=20% Similarity=0.341 Sum_probs=40.3
Q ss_pred cchhHHHHHHHHhhhhhcccccchhhhcccch-----hhhhccCCCcccccccc
Q 007127 487 RNADFQIICNEFLACITNMTRKVWGFLTHGCG-----YLQMLKDPIDFSWLRQS 535 (617)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~w~fl~~~~~-----~~~~~~~p~~~~~l~~~ 535 (617)
...+|.+.|++++.-+.+.++..|+|+.-..+ |.+.||+||||+=+.+.
T Consensus 4 ~~~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~k 57 (112)
T cd05510 4 GQEEFYESLDKVLNELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKK 57 (112)
T ss_pred cHHHHHHHHHHHHHHHHhcCccccchhcCCChhhcCCHHHHhcCccCHHHHHHH
Confidence 35678889999999998888889999976543 79999999999955554
No 16
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=64.61 E-value=7.1 Score=35.13 Aligned_cols=85 Identities=18% Similarity=0.140 Sum_probs=55.8
Q ss_pred HHHHHHHHhhhhhcccccchhhhcccch-----hhhhccCCCccccccccCCccccCcCCcccccccccchhhhhhcccc
Q 007127 491 FQIICNEFLACITNMTRKVWGFLTHGCG-----YLQMLKDPIDFSWLRQSSNLCHTPCCSDEESNKETGYQESICRRVMQ 565 (617)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~w~fl~~~~~-----~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (617)
+..+-+.++.-+- -+..|+|.--..+ |.+.||+|||++=+.+.... ..|.
T Consensus 4 l~~~L~~~~~~~~--~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~--------------~~Y~--------- 58 (99)
T cd05508 4 LSKLLKFALERMK--QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRK--------------KAYG--------- 58 (99)
T ss_pred HHHHHHHHHHHHh--CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhc--------------CCCC---------
Confidence 3444344444343 3678888764433 89999999999966655111 0122
Q ss_pred cccccccchhhhhhhHHHhhhcccchhccCCCCchhhhHhhhhc
Q 007127 566 RCDGEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKIKNVVQ 609 (617)
Q Consensus 566 ~~~~~~~~~~~~l~~~c~~~~~~l~~~cy~~~~~~~~~~~~~~~ 609 (617)
..++.+..|-++---|.+| +||.|.+....+.+++
T Consensus 59 -s~~ef~~Dv~LI~~Na~~Y--------N~~~s~i~~~A~~l~~ 93 (99)
T cd05508 59 -STDAFLADAKWILHNAIIY--------NGGDHKLTQAAKAIVK 93 (99)
T ss_pred -CHHHHHHHHHHHHHHHHHH--------CCCCCHHHHHHHHHHH
Confidence 5667777777777788887 6788888888877764
No 17
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=52.62 E-value=5.9 Score=44.85 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=22.7
Q ss_pred CCCEEEEEEecCCCCCCeEEEeccCC
Q 007127 218 HGPRIIVRSIKPINKGEEVTVAYTDL 243 (617)
Q Consensus 218 ~G~~~~VrAir~I~~GEEItisYidl 243 (617)
+-+++.+.|.+.|+.|||+|.+|...
T Consensus 392 ~~t~~~~~a~~~i~~g~e~t~~~n~~ 417 (463)
T KOG1081|consen 392 GDTRVGLFAPRQIEAGEELTFNYNGN 417 (463)
T ss_pred cccccccccccccccchhhhheeecc
Confidence 34678899999999999999999865
No 18
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=50.28 E-value=26 Score=31.52 Aligned_cols=82 Identities=13% Similarity=0.109 Sum_probs=49.8
Q ss_pred HHHHHHhhhhhcccccchhhhcc----cch-hhhhccCCCccccccccCCccccCcCCcccccccccchhhhhhcccccc
Q 007127 493 IICNEFLACITNMTRKVWGFLTH----GCG-YLQMLKDPIDFSWLRQSSNLCHTPCCSDEESNKETGYQESICRRVMQRC 567 (617)
Q Consensus 493 ~~~~~~~~~~~~~~~~~w~fl~~----~~~-~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (617)
..+.+++.-+.+ ....|+|+.- +.| |.+.||+||||+=+.+....- .| ++
T Consensus 6 ~~~~~il~~l~~-~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~--------------~Y----------~s 60 (104)
T cd05507 6 KAILLVYRTLAS-HRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENG--------------TI----------RS 60 (104)
T ss_pred HHHHHHHHHHHc-CCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcC--------------CC----------CC
Confidence 333344443332 3447888853 344 899999999999665541111 11 25
Q ss_pred cccccchhhhhhhHHHhhhcccchhccCCCCchhhhHhhh
Q 007127 568 DGEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKIKNV 607 (617)
Q Consensus 568 ~~~~~~~~~~l~~~c~~~~~~l~~~cy~~~~~~~~~~~~~ 607 (617)
.++.+..+.++---|.+| +||.|......+.+
T Consensus 61 ~~ef~~D~~li~~Na~~y--------N~~~s~v~~~A~~l 92 (104)
T cd05507 61 TAEFQRDVLLMFQNAIMY--------NSSDHDVYLMAVEM 92 (104)
T ss_pred HHHHHHHHHHHHHHHHHH--------CCCCCHHHHHHHHH
Confidence 667777777777778887 56776665555544
No 19
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=49.98 E-value=19 Score=32.68 Aligned_cols=86 Identities=15% Similarity=0.262 Sum_probs=54.5
Q ss_pred hhHHHHHHHHhhhhhcccccchhhhcc------cch-hhhhccCCCccccccccCCccccCcCCcccccccccchhhhhh
Q 007127 489 ADFQIICNEFLACITNMTRKVWGFLTH------GCG-YLQMLKDPIDFSWLRQSSNLCHTPCCSDEESNKETGYQESICR 561 (617)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~w~fl~~------~~~-~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (617)
++.+-+.++.+.-+.. .+..|+|+-- |.| |.+.||+||||+=+.+....- .|.
T Consensus 4 ~q~~~~~~~il~~l~~-~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~--------------~Y~----- 63 (107)
T cd05497 4 NQLQYLLKVVLKALWK-HKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENN--------------YYW----- 63 (107)
T ss_pred HHHHHHHHHHHHHHHh-CCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCC--------------CCC-----
Confidence 4455555555555544 4568999832 444 899999999999666551110 122
Q ss_pred cccccccccccchhhhhhhHHHhhhcccchhccCCCCchhhhHhhh
Q 007127 562 RVMQRCDGEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKIKNV 607 (617)
Q Consensus 562 ~~~~~~~~~~~~~~~~l~~~c~~~~~~l~~~cy~~~~~~~~~~~~~ 607 (617)
..++....+-++---|..| .||.|......+.+
T Consensus 64 -----s~~ef~~D~~li~~Na~~y--------N~~~s~i~~~A~~l 96 (107)
T cd05497 64 -----SASECIQDFNTMFTNCYIY--------NKPGDDVVLMAQTL 96 (107)
T ss_pred -----CHHHHHHHHHHHHHHHHHH--------CCCCCHHHHHHHHH
Confidence 5566777777777778887 56777665554443
No 20
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=48.86 E-value=14 Score=41.20 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=25.1
Q ss_pred CCCEEEEEEecCCCCCCeEEEeccCCCC
Q 007127 218 HGPRIIVRSIKPINKGEEVTVAYTDLLQ 245 (617)
Q Consensus 218 ~G~~~~VrAir~I~~GEEItisYidll~ 245 (617)
+|..+..|++|+|++||||.|-|.+-..
T Consensus 120 ~~~~Ifyrt~r~I~p~eELlVWY~~e~~ 147 (396)
T KOG2461|consen 120 IGENIFYRTIRDIRPNEELLVWYGSEYA 147 (396)
T ss_pred ccCceEEEecccCCCCCeEEEEeccchH
Confidence 5678999999999999999999998653
No 21
>TIGR02059 swm_rep_I cyanobacterial long protein repeat. This domain appears in 29 copies in a large (10000 amino protein in Synechococcus sp. WH8102 associated with a novel flagellar system, as one of three different repeats. Similar domains are found in two different large (<3500) proteins of Synechocystis PCC6803.
Probab=42.39 E-value=28 Score=31.99 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.8
Q ss_pred CEEEEEEecCCCCCCeEEEeccCCC
Q 007127 220 PRIIVRSIKPINKGEEVTVAYTDLL 244 (617)
Q Consensus 220 ~~~~VrAir~I~~GEEItisYidll 244 (617)
..+.+.=.++|..||+|+++|.+.-
T Consensus 75 ktVTLTL~~~V~~Gq~VTVsYt~ps 99 (101)
T TIGR02059 75 TTITLTLAQVVEDGDEVTLSYTKNS 99 (101)
T ss_pred cEEEEEecccccCCCEEEEEeeCCC
Confidence 3788888899999999999999863
No 22
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=41.26 E-value=27 Score=31.25 Aligned_cols=79 Identities=19% Similarity=0.285 Sum_probs=48.9
Q ss_pred HHHHhhhhhcccccchhhhcccch-----hhhhccCCCccccccccCCccccCcCCcccccccccchhhhhhcccccccc
Q 007127 495 CNEFLACITNMTRKVWGFLTHGCG-----YLQMLKDPIDFSWLRQSSNLCHTPCCSDEESNKETGYQESICRRVMQRCDG 569 (617)
Q Consensus 495 ~~~~~~~~~~~~~~~w~fl~~~~~-----~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (617)
|+++++-+.+ -+..|+|+.-..+ |.+.||+||||+=+.+.... ..|. ..+
T Consensus 5 c~~il~~l~~-~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~--------------~~Y~----------s~~ 59 (97)
T cd05505 5 CEEILSKILK-YRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSC--------------GSYS----------SVQ 59 (97)
T ss_pred HHHHHHHHHh-CCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcC--------------CCCC----------CHH
Confidence 4444444433 2456888866553 89999999999965554111 0111 456
Q ss_pred cccchhhhhhhHHHhhhcccchhccCCCCchhhhHhh
Q 007127 570 EERITIFQLGVHCIAYGGYLANICYGPNSHWPCKIKN 606 (617)
Q Consensus 570 ~~~~~~~~l~~~c~~~~~~l~~~cy~~~~~~~~~~~~ 606 (617)
+....+-++---|..| +||.|+.....+.
T Consensus 60 ef~~D~~li~~Na~~y--------N~~~s~i~~~a~~ 88 (97)
T cd05505 60 EFLDDMKLVFSNAEKY--------YENGSYVLSCMRK 88 (97)
T ss_pred HHHHHHHHHHHHHHHH--------CCCCCHHHHHHHH
Confidence 6666777776678877 5677776655443
No 23
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=40.81 E-value=19 Score=31.89 Aligned_cols=79 Identities=20% Similarity=0.323 Sum_probs=48.4
Q ss_pred HHHHHhhhhhcccccchhhhccc----ch-hhhhccCCCccccccccCCccccCcCCcccccccccchhhhhhccccccc
Q 007127 494 ICNEFLACITNMTRKVWGFLTHG----CG-YLQMLKDPIDFSWLRQSSNLCHTPCCSDEESNKETGYQESICRRVMQRCD 568 (617)
Q Consensus 494 ~~~~~~~~~~~~~~~~w~fl~~~----~~-~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (617)
.|++++.-+... +..|+|+.-. .| |.+.||+||||+=+.+..... .| ...
T Consensus 4 ~c~~il~~l~~~-~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~--------------~Y----------~s~ 58 (97)
T cd05503 4 LCETILDEMEAH-EDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESG--------------QY----------KTL 58 (97)
T ss_pred HHHHHHHHHHcC-CCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccC--------------CC----------CCH
Confidence 456666666553 5668888433 23 899999999999555441110 11 245
Q ss_pred ccccchhhhhhhHHHhhhcccchhccCCCCchhhhHh
Q 007127 569 GEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKIK 605 (617)
Q Consensus 569 ~~~~~~~~~l~~~c~~~~~~l~~~cy~~~~~~~~~~~ 605 (617)
++-...+-++-.-|..| +||.|......+
T Consensus 59 ~ef~~D~~li~~Na~~y--------N~~~s~i~~~a~ 87 (97)
T cd05503 59 EEFAEDVRLVFDNCETF--------NEDDSEVGRAGH 87 (97)
T ss_pred HHHHHHHHHHHHHHHHH--------CCCCCHHHHHHH
Confidence 56666777777778877 566665544333
No 24
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=39.04 E-value=17 Score=31.11 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=19.3
Q ss_pred CceEEecCCCCCCccccCCCceEEe
Q 007127 1 MEMRASEEIRQGEDITPPLFPLTFA 25 (617)
Q Consensus 1 ~GL~AtrdI~~Ge~Il~~e~Pla~v 25 (617)
.|++|+++|++|+.|+. ..+.+..
T Consensus 12 ~gl~a~~~i~~g~~i~~-~~g~~~~ 35 (116)
T smart00317 12 WGVRATEDIPKGEFIGE-YVGEIIT 35 (116)
T ss_pred EEEEECCccCCCCEEEE-EEeEEEC
Confidence 38999999999999987 5655544
No 25
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=36.84 E-value=27 Score=31.65 Aligned_cols=28 Identities=18% Similarity=0.491 Sum_probs=21.7
Q ss_pred cchhhhc----ccch-hhhhccCCCcccccccc
Q 007127 508 KVWGFLT----HGCG-YLQMLKDPIDFSWLRQS 535 (617)
Q Consensus 508 ~~w~fl~----~~~~-~~~~~~~p~~~~~l~~~ 535 (617)
-.|+|+. .+.| |.+.||+||||+=+.+.
T Consensus 24 ~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~k 56 (107)
T cd05516 24 LAEVFIQLPSRKELPEYYELIRKPVDFKKIKER 56 (107)
T ss_pred eeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHH
Confidence 3789985 3555 89999999999966655
No 26
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=36.59 E-value=12 Score=31.24 Aligned_cols=19 Identities=32% Similarity=0.833 Sum_probs=17.0
Q ss_pred cccCCCcCCCCC----CcCCCCC
Q 007127 32 DGHCSSCFSPLP----SCCSSLP 50 (617)
Q Consensus 32 ~~~Cs~CF~~lp----YCs~sC~ 50 (617)
+.||-.|-+++| |||..|.
T Consensus 3 HkHC~~CG~~Ip~~~~fCS~~C~ 25 (59)
T PF09889_consen 3 HKHCPVCGKPIPPDESFCSPKCR 25 (59)
T ss_pred CCcCCcCCCcCCcchhhhCHHHH
Confidence 689999999987 9999994
No 27
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=33.25 E-value=30 Score=31.96 Aligned_cols=40 Identities=23% Similarity=0.494 Sum_probs=27.7
Q ss_pred HHHHhhhhhccc--ccchhhhc------ccc-hhhhhccCCCccccccc
Q 007127 495 CNEFLACITNMT--RKVWGFLT------HGC-GYLQMLKDPIDFSWLRQ 534 (617)
Q Consensus 495 ~~~~~~~~~~~~--~~~w~fl~------~~~-~~~~~~~~p~~~~~l~~ 534 (617)
+++++.-+..+. .-.|+|+- .|. .|.+.||+|+||+=...
T Consensus 5 ~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~ 53 (114)
T cd05494 5 LERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVN 53 (114)
T ss_pred HHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHH
Confidence 455555555555 46799983 344 48999999999984443
No 28
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=30.13 E-value=36 Score=30.15 Aligned_cols=82 Identities=18% Similarity=0.357 Sum_probs=48.0
Q ss_pred HHHHHhhhhhccc--ccchhhhc------ccch-hhhhccCCCccccccccCCccccCcCCcccccccccchhhhhhccc
Q 007127 494 ICNEFLACITNMT--RKVWGFLT------HGCG-YLQMLKDPIDFSWLRQSSNLCHTPCCSDEESNKETGYQESICRRVM 564 (617)
Q Consensus 494 ~~~~~~~~~~~~~--~~~w~fl~------~~~~-~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (617)
.|.++++-+.+.- +-.|+|.- .++| |.+.|++||||+=+.+....-. |
T Consensus 4 ~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~--------------Y--------- 60 (102)
T cd05498 4 FCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNRE--------------Y--------- 60 (102)
T ss_pred HHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCC--------------C---------
Confidence 4566666555532 45788884 1343 8999999999995555411100 1
Q ss_pred ccccccccchhhhhhhHHHhhhcccchhccCCCCchhhhHhhh
Q 007127 565 QRCDGEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKIKNV 607 (617)
Q Consensus 565 ~~~~~~~~~~~~~l~~~c~~~~~~l~~~cy~~~~~~~~~~~~~ 607 (617)
+...+-...+-++---|..| +||.|-...-.+.+
T Consensus 61 -~s~~ef~~D~~li~~Na~~y--------n~~~s~i~~~a~~l 94 (102)
T cd05498 61 -ADAQEFAADVRLMFSNCYKY--------NPPDHPVHAMARKL 94 (102)
T ss_pred -CCHHHHHHHHHHHHHHHHHH--------CCCCCHHHHHHHHH
Confidence 14445555555555557664 67776665554443
No 29
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=29.68 E-value=38 Score=30.54 Aligned_cols=43 Identities=26% Similarity=0.368 Sum_probs=29.6
Q ss_pred HHHHHHhhhhhccc-----ccchhhhccc----c-hhhhhccCCCcccccccc
Q 007127 493 IICNEFLACITNMT-----RKVWGFLTHG----C-GYLQMLKDPIDFSWLRQS 535 (617)
Q Consensus 493 ~~~~~~~~~~~~~~-----~~~w~fl~~~----~-~~~~~~~~p~~~~~l~~~ 535 (617)
..+++++..|.+.. +-.|+|+.=. . .|.+.||+||||+=+.+.
T Consensus 3 ~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~k 55 (105)
T cd05515 3 QKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSK 55 (105)
T ss_pred HHHHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHH
Confidence 45666666666654 3468887532 2 379999999999966655
No 30
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=28.97 E-value=43 Score=31.18 Aligned_cols=46 Identities=15% Similarity=0.364 Sum_probs=33.3
Q ss_pred hhHHHHHHHHhhhhhcccccchhhhcccc-----hhhhhccCCCcccccccc
Q 007127 489 ADFQIICNEFLACITNMTRKVWGFLTHGC-----GYLQMLKDPIDFSWLRQS 535 (617)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~w~fl~~~~-----~~~~~~~~p~~~~~l~~~ 535 (617)
.+++..|++.+.-+-+. ...|+|..-.. .|.+.||+||||+=+.+.
T Consensus 4 ~~w~~~c~~il~~l~~~-~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~k 54 (119)
T cd05496 4 SDWKKQCKELVNLMWDC-EDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKET 54 (119)
T ss_pred HHHHHHHHHHHHHHHhC-CccccccCCCChhhcCcHHHHhCCcccHHHHHHH
Confidence 45667777777776654 45788986544 489999999999955554
No 31
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=28.68 E-value=39 Score=31.10 Aligned_cols=81 Identities=19% Similarity=0.286 Sum_probs=51.5
Q ss_pred HHHHHHHhhhhhcccccchhhhcccc-----hhhhhccCCCccccccccCCccccCcCCcccccccccchhhhhhccccc
Q 007127 492 QIICNEFLACITNMTRKVWGFLTHGC-----GYLQMLKDPIDFSWLRQSSNLCHTPCCSDEESNKETGYQESICRRVMQR 566 (617)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~w~fl~~~~-----~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (617)
...|.+++.-+..- +..|+|+--.. .|.+.|++||||+=+.+....- .|.
T Consensus 14 ~~~c~~il~~l~~~-~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~--------------~Y~---------- 68 (115)
T cd05504 14 LSALEQLLVEIVKH-KDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMG--------------EYK---------- 68 (115)
T ss_pred HHHHHHHHHHHHhC-CCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccC--------------CCC----------
Confidence 45677888877764 56799975553 3899999999999666652110 111
Q ss_pred ccccccchhhhhhhHHHhhhcccchhccCCCCchhhhHh
Q 007127 567 CDGEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKIK 605 (617)
Q Consensus 567 ~~~~~~~~~~~l~~~c~~~~~~l~~~cy~~~~~~~~~~~ 605 (617)
..++....+-++---|.+| +||.|.+...+.
T Consensus 69 s~~~f~~Dv~LI~~Na~~y--------N~~~s~i~~~A~ 99 (115)
T cd05504 69 LAEEFLSDIQLVFSNCFLY--------NPEHTSVYKAGT 99 (115)
T ss_pred CHHHHHHHHHHHHHHHHHH--------CCCCCHHHHHHH
Confidence 3445555666666667776 566666554443
No 32
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=26.75 E-value=32 Score=31.70 Aligned_cols=60 Identities=10% Similarity=0.029 Sum_probs=43.8
Q ss_pred hhhhhccCCCccccccccCCccccCcCCcccccccccchhhhhhcccccccccccchhhhhhhHHHhhhcccchhccCCC
Q 007127 518 GYLQMLKDPIDFSWLRQSSNLCHTPCCSDEESNKETGYQESICRRVMQRCDGEERITIFQLGVHCIAYGGYLANICYGPN 597 (617)
Q Consensus 518 ~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~~~l~~~cy~~~ 597 (617)
.|.+.||+|||||=+.+..+. +.=+..+|....+..+---|.+| |||.
T Consensus 38 dY~~iIk~PmDL~tI~~kl~~------------------------~~Y~s~~ef~~Dv~LI~~N~~~y--------Ng~~ 85 (109)
T cd05492 38 KRRRLIHTHLDVADIQEKINS------------------------EKYTSLEEFKADALLLLHNTAIF--------HGAD 85 (109)
T ss_pred CHHHHhCCCCcHHHHHHHHHc------------------------CCCCCHHHHHHHHHHHHHHHHHH--------CCCC
Confidence 379999999999966554111 11126778888888888889888 6788
Q ss_pred CchhhhHhhhhc
Q 007127 598 SHWPCKIKNVVQ 609 (617)
Q Consensus 598 ~~~~~~~~~~~~ 609 (617)
|-...-++.++.
T Consensus 86 s~~~~~A~~l~~ 97 (109)
T cd05492 86 SEQYDAARWLYR 97 (109)
T ss_pred CHHHHHHHHHHH
Confidence 888777777764
No 33
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=26.31 E-value=47 Score=29.53 Aligned_cols=42 Identities=24% Similarity=0.572 Sum_probs=29.0
Q ss_pred HHHHHhhhhhcc--cccchhhhcc------cch-hhhhccCCCcccccccc
Q 007127 494 ICNEFLACITNM--TRKVWGFLTH------GCG-YLQMLKDPIDFSWLRQS 535 (617)
Q Consensus 494 ~~~~~~~~~~~~--~~~~w~fl~~------~~~-~~~~~~~p~~~~~l~~~ 535 (617)
.|.++++-+... .+-.|+|+-- +.| |.+.|++||||+=+.+.
T Consensus 4 ~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~k 54 (102)
T cd05499 4 FCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKK 54 (102)
T ss_pred HHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHH
Confidence 466666666553 2457999632 344 89999999999966655
No 34
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=24.86 E-value=51 Score=29.00 Aligned_cols=42 Identities=21% Similarity=0.528 Sum_probs=29.2
Q ss_pred HHHHHHhhhhhcccccchhhhcc------cch-hhhhccCCCcccccccc
Q 007127 493 IICNEFLACITNMTRKVWGFLTH------GCG-YLQMLKDPIDFSWLRQS 535 (617)
Q Consensus 493 ~~~~~~~~~~~~~~~~~w~fl~~------~~~-~~~~~~~p~~~~~l~~~ 535 (617)
..|++++..+.. .+..|+|.-= +.| |.+.+++||||+=+.+.
T Consensus 3 ~~c~~il~~l~~-~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~k 51 (99)
T cd05506 3 KQCGTLLRKLMK-HKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKK 51 (99)
T ss_pred HHHHHHHHHHHh-CCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHH
Confidence 346667766665 3457888732 333 89999999999966655
No 35
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=23.13 E-value=48 Score=26.20 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=11.3
Q ss_pred EEEEecCCCCCCeEE
Q 007127 223 IVRSIKPINKGEEVT 237 (617)
Q Consensus 223 ~VrAir~I~~GEEIt 237 (617)
++.|.++|++|+.|+
T Consensus 3 vvVA~~di~~G~~i~ 17 (63)
T PF08666_consen 3 VVVAARDIPAGTVIT 17 (63)
T ss_dssp EEEESSTB-TT-BEC
T ss_pred EEEEeCccCCCCEEc
Confidence 578999999999984
No 36
>smart00297 BROMO bromo domain.
Probab=21.44 E-value=73 Score=27.82 Aligned_cols=88 Identities=20% Similarity=0.308 Sum_probs=55.7
Q ss_pred chhHHHHHHHHhhhhhcccccchhhhccc----c-hhhhhccCCCccccccccCCccccCcCCcccccccccchhhhhhc
Q 007127 488 NADFQIICNEFLACITNMTRKVWGFLTHG----C-GYLQMLKDPIDFSWLRQSSNLCHTPCCSDEESNKETGYQESICRR 562 (617)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~w~fl~~~----~-~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (617)
...+.+++.+++..+.+- +..|.|+--. . .|.+.+++||||+=+.+....- .|
T Consensus 5 ~~~~~~~~~~i~~~~~~~-~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~--------------~Y------- 62 (107)
T smart00297 5 QKKLQSLLKAVLDKLDSH-RLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENG--------------KY------- 62 (107)
T ss_pred HHHHHHHHHHHHHHHHhC-ccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcC--------------CC-------
Confidence 345777788888777653 6678887321 2 4899999999999665541110 01
Q ss_pred ccccccccccchhhhhhhHHHhhhcccchhccCCCCchhhhHhhhh
Q 007127 563 VMQRCDGEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKIKNVV 608 (617)
Q Consensus 563 ~~~~~~~~~~~~~~~l~~~c~~~~~~l~~~cy~~~~~~~~~~~~~~ 608 (617)
+..++-...+-++---|..| |||.|.....++.+.
T Consensus 63 ---~s~~ef~~D~~li~~Na~~~--------n~~~s~~~~~a~~l~ 97 (107)
T smart00297 63 ---SSVEEFVADVQLMFSNAKTY--------NGPDSEVYKDAKKLE 97 (107)
T ss_pred ---CCHHHHHHHHHHHHHHHHHH--------CCCCCHHHHHHHHHH
Confidence 13445555566666666664 778877776666554
No 37
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=21.31 E-value=72 Score=28.81 Aligned_cols=85 Identities=16% Similarity=0.225 Sum_probs=49.2
Q ss_pred HHHHHHhhhhhcccccchhhhcc---cc-hhhhhccCCCccccccccCCccccCcCCcccccccccchhhhhhccccccc
Q 007127 493 IICNEFLACITNMTRKVWGFLTH---GC-GYLQMLKDPIDFSWLRQSSNLCHTPCCSDEESNKETGYQESICRRVMQRCD 568 (617)
Q Consensus 493 ~~~~~~~~~~~~~~~~~w~fl~~---~~-~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (617)
..|.+++.=+-+- ...|+|.-= +. .|.+.||+||||+=+.+....-. ...|. ..
T Consensus 7 ~~c~~il~~l~~~-~~s~~F~~pv~~~~p~Y~~iI~~PmdL~tI~~kL~~~~-----------~~~Y~----------s~ 64 (109)
T cd05502 7 RKCERLLLELYCH-ELSLPFHEPVSPSVPNYYKIIKTPMDLSLIRKKLQPKS-----------PQHYS----------SP 64 (109)
T ss_pred HHHHHHHHHHHhC-CCChhhcCCCCCCCCCHHHHCCCCccHHHHHHHHhcCC-----------CCCCC----------CH
Confidence 3455555544442 668888742 22 37899999999996655522110 00111 44
Q ss_pred ccccchhhhhhhHHHhhhcccchhccCCCCchhhhHhhh
Q 007127 569 GEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKIKNV 607 (617)
Q Consensus 569 ~~~~~~~~~l~~~c~~~~~~l~~~cy~~~~~~~~~~~~~ 607 (617)
++....+-++---|..| +||.|......+.+
T Consensus 65 ~~f~~D~~li~~Na~~y--------N~~~s~i~~~a~~l 95 (109)
T cd05502 65 EEFVADVRLMFKNCYKF--------NEEDSEVAQAGKEL 95 (109)
T ss_pred HHHHHHHHHHHHHHHHH--------CCCCCHHHHHHHHH
Confidence 55566666666668887 56776655544444
No 38
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=20.37 E-value=86 Score=28.50 Aligned_cols=46 Identities=20% Similarity=0.366 Sum_probs=29.2
Q ss_pred hHHHHHHHHhhhhhcccccchhhhcc------cc-hhhhhccCCCcccccccc
Q 007127 490 DFQIICNEFLACITNMTRKVWGFLTH------GC-GYLQMLKDPIDFSWLRQS 535 (617)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~w~fl~~------~~-~~~~~~~~p~~~~~l~~~ 535 (617)
+++..+.+.+.=+...-...|+|.-- +. .|.+.||+||||+=+.+.
T Consensus 3 ~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~k 55 (108)
T cd05495 3 ELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRK 55 (108)
T ss_pred HHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHH
Confidence 34444444444444444667888842 33 479999999999966555
Done!