Query 007127
Match_columns 617
No_of_seqs 250 out of 1458
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 17:50:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qww_A SET and MYND domain-con 100.0 2.9E-39 1E-43 347.5 20.8 293 1-378 19-353 (433)
2 3n71_A Histone lysine methyltr 100.0 4.2E-39 1.5E-43 351.1 20.1 305 1-378 19-364 (490)
3 3qwp_A SET and MYND domain-con 100.0 1.1E-37 3.8E-42 333.9 16.9 284 1-378 17-342 (429)
4 3rq4_A Histone-lysine N-methyl 99.4 7.9E-14 2.7E-18 140.8 1.2 86 127-272 153-238 (247)
5 3s8p_A Histone-lysine N-methyl 99.2 7E-12 2.4E-16 128.3 3.4 87 125-271 180-266 (273)
6 1n3j_A A612L, histone H3 lysin 99.0 7.3E-11 2.5E-15 105.6 1.9 54 146-247 59-112 (119)
7 2w5y_A Histone-lysine N-methyl 98.9 8E-10 2.8E-14 107.6 4.6 41 220-269 147-189 (192)
8 3qxy_A N-lysine methyltransfer 98.8 2.3E-09 7.7E-14 116.1 4.7 84 124-263 192-278 (449)
9 3ooi_A Histone-lysine N-methyl 98.7 7.3E-09 2.5E-13 103.3 5.8 64 147-265 160-223 (232)
10 3f9x_A Histone-lysine N-methyl 98.7 2.3E-09 7.8E-14 100.5 1.9 37 219-255 129-165 (166)
11 3ope_A Probable histone-lysine 98.7 8.2E-09 2.8E-13 102.1 3.6 43 219-270 168-212 (222)
12 2h21_A Ribulose-1,5 bisphospha 98.6 1.9E-08 6.6E-13 107.7 4.8 91 124-264 167-258 (440)
13 3smt_A Histone-lysine N-methyl 98.6 3.2E-08 1.1E-12 108.6 6.6 84 124-264 246-330 (497)
14 3h6l_A Histone-lysine N-methyl 98.5 4.9E-08 1.7E-12 100.1 3.8 37 220-266 213-249 (278)
15 3hna_A Histone-lysine N-methyl 98.5 5.6E-08 1.9E-12 99.9 3.6 39 219-265 242-280 (287)
16 1ml9_A Histone H3 methyltransf 98.4 1.5E-07 5.2E-12 97.1 4.4 46 220-265 247-293 (302)
17 3bo5_A Histone-lysine N-methyl 98.4 3.6E-07 1.2E-11 94.1 6.9 51 220-270 229-284 (290)
18 2f69_A Histone-lysine N-methyl 98.4 1.6E-07 5.3E-12 95.5 3.7 30 219-248 209-238 (261)
19 2r3a_A Histone-lysine N-methyl 98.3 4.8E-07 1.6E-11 93.6 6.2 47 219-265 241-291 (300)
20 1mvh_A Cryptic LOCI regulator 98.3 3.9E-07 1.3E-11 94.1 5.5 27 219-245 239-265 (299)
21 1h3i_A Histone H3 lysine 4 spe 98.3 3E-07 1E-11 93.8 3.0 27 219-245 263-289 (293)
22 2qpw_A PR domain zinc finger p 97.8 1.1E-05 3.6E-10 75.7 4.2 27 220-246 121-147 (149)
23 3db5_A PR domain zinc finger p 96.2 0.0029 1E-07 59.1 3.7 27 219-245 118-144 (151)
24 3ep0_A PR domain zinc finger p 95.7 0.0061 2.1E-07 58.3 3.7 26 219-244 122-147 (170)
25 3dal_A PR domain zinc finger p 94.8 0.013 4.6E-07 57.2 3.0 25 219-243 152-176 (196)
26 3ihx_A PR domain zinc finger p 93.8 0.03 1E-06 52.5 3.0 26 219-244 117-142 (152)
27 3ray_A PR domain-containing pr 92.5 0.059 2E-06 54.2 3.0 39 219-267 161-199 (237)
28 2odd_A Protein CBFA2T1; MYND z 92.3 0.019 6.4E-07 46.0 -0.7 35 7-51 2-46 (64)
29 3mb3_A PH-interacting protein; 47.3 11 0.00038 33.9 2.9 74 487-585 18-96 (135)
30 3jvl_A Bromodomain-containing 43.7 12 0.0004 33.0 2.5 83 493-607 12-103 (120)
31 3iu5_A Protein polybromo-1; PB 43.5 14 0.00049 32.3 3.0 83 492-606 7-99 (116)
32 3k2j_A Protein polybromo-1; PB 40.0 18 0.00062 32.5 3.2 86 487-604 14-109 (130)
33 2grc_A Probable global transcr 39.0 20 0.00067 32.1 3.2 48 488-535 9-67 (129)
34 2dat_A Possible global transcr 36.3 32 0.0011 30.4 4.1 89 485-605 8-106 (123)
35 3q2e_A Bromodomain and WD repe 34.9 23 0.0008 31.3 3.0 47 488-535 8-59 (123)
36 3p1f_A CREB-binding protein; s 33.8 28 0.00095 30.5 3.3 89 486-606 7-102 (119)
37 4alg_A Bromodomain-containing 33.3 24 0.00083 32.6 3.0 87 485-604 27-120 (154)
38 3mb4_A Protein polybromo-1; PB 33.3 25 0.00087 31.1 3.0 85 489-605 14-108 (124)
39 1n3j_A A612L, histone H3 lysin 32.4 14 0.00046 32.3 1.0 24 1-26 16-39 (119)
40 1wwp_A Hypothetical protein TT 31.7 1.6E+02 0.0055 25.6 7.9 58 317-375 47-106 (119)
41 3uv4_A Second bromodomain of h 31.2 30 0.001 32.2 3.2 86 490-607 29-119 (158)
42 3mqm_A Probable histone-lysine 30.2 32 0.0011 30.4 3.1 85 489-605 8-102 (126)
43 3fkm_X Signaling protein; brom 29.3 36 0.0012 31.8 3.4 47 488-535 19-72 (166)
44 3d7c_A General control of amin 26.7 42 0.0014 29.0 3.2 87 488-607 5-96 (112)
45 3rcw_A Bromodomain-containing 26.2 33 0.0011 30.7 2.5 86 488-606 11-101 (135)
46 2dkw_A Hypothetical protein KI 23.5 43 0.0015 30.2 2.7 47 488-535 10-56 (131)
47 3o36_A Transcription intermedi 23.4 93 0.0032 29.0 5.1 114 462-606 39-170 (184)
48 3f9x_A Histone-lysine N-methyl 22.7 27 0.00091 31.9 1.2 17 1-17 42-58 (166)
49 2oss_A HUNK1 protein, bromodom 22.6 49 0.0017 29.4 2.9 87 488-607 19-112 (127)
50 2d9e_A Peregrin; four-helix bu 21.8 45 0.0016 29.4 2.4 86 489-607 6-96 (121)
51 3ljw_A Protein polybromo-1; al 21.7 55 0.0019 28.7 3.0 87 488-606 6-102 (120)
52 1e6i_A Transcriptional activat 20.6 50 0.0017 29.1 2.5 84 490-606 13-101 (121)
No 1
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=100.00 E-value=2.9e-39 Score=347.51 Aligned_cols=293 Identities=20% Similarity=0.290 Sum_probs=220.5
Q ss_pred CceEEecCCCCCCccccCCCceEEeeccCCccccCCCcCCCCC------------CcCCCCC------------------
Q 007127 1 MEMRASEEIRQGEDITPPLFPLTFAFHDSLLDGHCSSCFSPLP------------SCCSSLP------------------ 50 (617)
Q Consensus 1 ~GL~AtrdI~~Ge~Il~~e~Pla~vL~d~~l~~~Cs~CF~~lp------------YCs~sC~------------------ 50 (617)
.||+|+++|++||+|+. ++|+++++.+.....+|++|+++.+ |||..|+
T Consensus 19 Rgl~A~r~i~~Ge~Il~-e~P~a~~~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~eC~~l~~~~ 97 (433)
T 3qww_A 19 RGLRALRPFHVGDLLFS-CPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKLECSSMVVLG 97 (433)
T ss_dssp EEEEESSCBCTTCEEEE-EECSEEEECGGGTTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHHHHHHTTTHHHHHHSS
T ss_pred CeEEECCCCCCCCEEEe-cCCceEEecccccCCcCCcccccCCCCCCCCCCcceeecChhhhhhhhhHHHHHHHHHHHhC
Confidence 38999999999999998 8999999998899999999998642 8998884
Q ss_pred ---CCCHHHHHHHHHhcCCCCCCCCCCh---hhHhhhhhhHHHhccCCChhHHHHHHHHHHHHHHH-hCC--CCChhHHH
Q 007127 51 ---LSSAELRAALHLLHSPLPTTSLPPP---PRLFGLLTNRDKLMSSSDSDVASKIREGAREMARA-RGN--LSDDVAWE 121 (617)
Q Consensus 51 ---~s~~~~RlaLRlL~~~~~~~s~~s~---~rl~~Lls~~~~L~s~~~~e~~~~i~~~a~~ma~~-r~~--~~d~~~le 121 (617)
.++..+|+++|+|++....+...+. ..+.+|.+|.+++.. +..+.+......+..+ .+. .++...+.
T Consensus 98 ~~~~p~~~~rl~~Ril~~~~~~~~~~~~~~~~~~~~L~sh~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~ 173 (433)
T 3qww_A 98 ENWNPSETVRLTARILAKQKIHPERTPSEKLLAVREFESHLDKLDN----EKKDLIQSDIAALHQFYSKYLEFPDHSSLV 173 (433)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHCCSCCGGGSSCCGGGCCCCGGGCCH----HHHHHHHHHHHHHHHHHTTTCCCCCHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhhhccccCchhhhhhHHHHHhhhhccCh----HHHHHHHHHHHHHHHHHhcccCCCCHHHHH
Confidence 1346799999999875322211222 234556666665532 3233344444444444 332 22333332
Q ss_pred HHHHHhhhcceeeeecCCCCceeEEEEeccccccccCcCCCCceeeccCCCCCCCcccchhhhccCCcccccCcccCCCC
Q 007127 122 EAALCLVMTNAVEVQDDKTGRILGIAVYDKDFSWINHSCSPNACYRFSLSEPNAPSFRNEKKMRIAPHVVFDSTEAETPG 201 (617)
Q Consensus 122 ~~~l~~v~tNsf~v~~~~~g~~lGiavY~P~~S~~NHSC~PNa~~~F~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~ 201 (617)
. +++++.+|+|+|.+. +...+|.||| |.+|+|||||.||+.+.|+
T Consensus 174 ~-~~~~~~~N~f~i~~~-~~~~~g~gl~-p~~s~~NHsC~PN~~~~~~-------------------------------- 218 (433)
T 3qww_A 174 V-LFAQVNCNGFTIEDE-ELSHLGSAIF-PDVALMNHSCCPNVIVTYK-------------------------------- 218 (433)
T ss_dssp H-HHHHHHHHCEEEECT-TCCEEEEEEC-TTGGGSEECSSCSEEEEEE--------------------------------
T ss_pred H-HHHHHcCCceecccC-CccceeEEec-ccccccCCCCCCCceEEEc--------------------------------
Confidence 2 689999999999998 7788999999 9999999999999999884
Q ss_pred CCCccchhccccCcCCCCCEEEEEEecCCCCCCeEEEeccCCCCCHHHHHHHHhcCCCeeEeCcCCCCCCCCchhhhhhh
Q 007127 202 KSDVCISCELKEGSKRHGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRRCSASPPSYVDMALEE 281 (617)
Q Consensus 202 ~~~~~~~~~~~~~~~~~G~~~~VrAir~I~~GEEItisYidll~p~~~Rq~~L~~~y~F~C~C~rC~~~~~~~sD~~l~~ 281 (617)
|.+++|||+|+|++||||||+|+|.++|+.+||+.|++.|+|.|.|.||..+.+ |..+.+
T Consensus 219 -----------------~~~~~~~a~r~I~~Geel~i~Y~~~~~~~~~R~~~L~~~~~F~C~C~~C~~~~~---d~~~~~ 278 (433)
T 3qww_A 219 -----------------GTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFFTCECRECTTKDK---DKAKVE 278 (433)
T ss_dssp -----------------TTEEEEEESSCBCTTCEEEECCSCTTSCHHHHHHHHHHHHSCCCCSHHHHHCTT---HHHHTC
T ss_pred -----------------CCEEEEEeccCcCCCCEEEEeecCCcCCHHHHHHHHhCcCCEEeECCCCCCCCc---chhhhh
Confidence 457899999999999999999999999999999999999999999999999887 666665
Q ss_pred cccCCcccccCCCCcccccHHHHHHHHHHHHHHHHHHhh---cCChhHHHHHHHHHHHhhhhhcchhhhHHHHHHhhhcC
Q 007127 282 TFSSNPEFLSLSSDYNFLKDEANQKLTDWMDEGTSEYLL---VGDPESCCQKLENILTQGLQGELLESEKVKIQLNLRLH 358 (617)
Q Consensus 282 i~~l~~~~~~~~s~s~~~~~~avekL~~~l~eA~~ey~~---~Gdpk~a~~yaelave~gl~e~g~~~edv~~m~~l~lh 358 (617)
+.+.. ..+..+.++.+..+..+.++++.. .|++.+|.+..+.+++ .+.-+++
T Consensus 279 ~~~~~----------~~~~~e~v~~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~---------------i~~~~lg 333 (433)
T 3qww_A 279 VRKLS----------SPPQAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQE---------------KMSSVFE 333 (433)
T ss_dssp BCCCS----------SCCCHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH---------------HHTTTBC
T ss_pred hhhcC----------CCccHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHH---------------HhhCccC
Confidence 54321 123456667776666665555553 4566777766666544 3456789
Q ss_pred cchhhHHHHHHHHHHHHhhh
Q 007127 359 PLHHLSLNAYTTLASAYKIR 378 (617)
Q Consensus 359 P~hH~S~~~~~tLa~aY~~~ 378 (617)
|.|-....++..|+.+|.-.
T Consensus 334 ~~Hp~~a~~~~nLa~~y~~~ 353 (433)
T 3qww_A 334 DSNVYMLHMMYQAMGVCLYM 353 (433)
T ss_dssp TTSHHHHHHHHHHHHHHHHT
T ss_pred hhchHHHHHHHHHHHHHHhh
Confidence 99999999999999999865
No 2
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=100.00 E-value=4.2e-39 Score=351.09 Aligned_cols=305 Identities=16% Similarity=0.241 Sum_probs=223.8
Q ss_pred CceEEecCCCCCCccccCCCceEEeeccCCccccCCCcCCCCC------------CcCCCCC------------------
Q 007127 1 MEMRASEEIRQGEDITPPLFPLTFAFHDSLLDGHCSSCFSPLP------------SCCSSLP------------------ 50 (617)
Q Consensus 1 ~GL~AtrdI~~Ge~Il~~e~Pla~vL~d~~l~~~Cs~CF~~lp------------YCs~sC~------------------ 50 (617)
.||+|+++|++||+|+. ++|+++++.+.....+|++||++.+ |||..|+
T Consensus 19 R~lvAtr~i~~Ge~Il~-e~P~~~v~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~eC~~~~~~~ 97 (490)
T 3n71_A 19 RGLKATKEFWAADVIFA-ERAYSAVVFDSLINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNECAAIKKYG 97 (490)
T ss_dssp EEEEESSCBCTTCEEEE-ECCSEEEECGGGTTTBCTTTCCBCSCCEECTTTSCCEESSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEeccCCCCCCEEEe-cCCceEEecccccCCcCCCCCCCCCCCCCCCCCCCcCcCCHHHhhhhhhHHHHHhHHHHhcC
Confidence 48999999999999998 9999999999999999999998642 8998884
Q ss_pred -CCCHHHHHHHHHhcCCCCCCCCCC---hhhHhhhhhhHHHhccCCChhHHHHHHHHHHHHHHH-hCCC--CChhHHHHH
Q 007127 51 -LSSAELRAALHLLHSPLPTTSLPP---PPRLFGLLTNRDKLMSSSDSDVASKIREGAREMARA-RGNL--SDDVAWEEA 123 (617)
Q Consensus 51 -~s~~~~RlaLRlL~~~~~~~s~~s---~~rl~~Lls~~~~L~s~~~~e~~~~i~~~a~~ma~~-r~~~--~d~~~le~~ 123 (617)
.++..+|+++|+|++....+...+ ...+..|.+|.+++.+ +..+.++..+..+..+ .+.. .+...+ ..
T Consensus 98 ~~p~~~~rl~lRiL~~~~~~~~~~~~~~~~~~~~L~sh~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ 172 (490)
T 3n71_A 98 KVPNENIRLAARIMWRVEREGTGLTEGCLVSVDDLQNHVEHFGE----EEQKELRVDVDTFLQYWPPQSQQFSMQYI-SH 172 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTSSBCTTCSSBGGGSCCCGGGCCH----HHHHHHHHHHHHHHHHSCTTSCCCCHHHH-HH
T ss_pred cCCCHHHHHHHHHHHHhhccCccCcchhhhHHHHHHhhhhhcCc----hHHHHHHHHHHHHHHHccccccCCCHHHH-HH
Confidence 245689999999987543322222 2245666667666542 3334455555555555 2221 122222 22
Q ss_pred HHHhhhcceeeeecCCC-CceeEEEEeccccccccCcCCCCceeeccCCCCCCCcccchhhhccCCcccccCcccCCCCC
Q 007127 124 ALCLVMTNAVEVQDDKT-GRILGIAVYDKDFSWINHSCSPNACYRFSLSEPNAPSFRNEKKMRIAPHVVFDSTEAETPGK 202 (617)
Q Consensus 124 ~l~~v~tNsf~v~~~~~-g~~lGiavY~P~~S~~NHSC~PNa~~~F~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ 202 (617)
+++++.+|+|+|.+. + ...+|.||| |.+|+|||||.||+.+.|+..+... +. .+
T Consensus 173 ~~~~~~~N~f~i~~~-~g~~~~g~gl~-p~~s~~NHSC~PN~~~~~~~~~~~~------------~~---------~~-- 227 (490)
T 3n71_A 173 IFGVINCNGFTLSDQ-RGLQAVGVGIF-PNLGLVNHDCWPNCTVIFNNGNHEA------------VK---------SM-- 227 (490)
T ss_dssp HHHHHHTTEEEEECT-TSCSEEEEEEC-TTGGGCEECSSCSEEEEEECCCCSS------------SC---------CC--
T ss_pred HHHHHhccCcccccC-CCCccceEEEc-hhhhhcccCCCCCeeEEecCCcccc------------cc---------cc--
Confidence 799999999999987 5 468999999 9999999999999999996432100 00 00
Q ss_pred CCccchhccccCcCCCCCEEEEEEecCCCCCCeEEEeccCCCCCHHHHHHHHhcCCCeeEeCcCCCCCCCCchhhhhhhc
Q 007127 203 SDVCISCELKEGSKRHGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRRCSASPPSYVDMALEET 282 (617)
Q Consensus 203 ~~~~~~~~~~~~~~~~G~~~~VrAir~I~~GEEItisYidll~p~~~Rq~~L~~~y~F~C~C~rC~~~~~~~sD~~l~~i 282 (617)
| ..+.+++|+|+|+|++||||||+|+|.++|+..||+.|++.|+|.|.|.||..+.+ |..+.++
T Consensus 228 --------~-----~~~~~~~v~A~rdI~~GEEltisY~~~~~~~~~R~~~L~~~~~F~C~C~~C~~~~~---~~~~~~~ 291 (490)
T 3n71_A 228 --------F-----HTQMRIELRALGKISEGEELTVSYIDFLHLSEERRRQLKKQYYFDCSCEHCQKGLK---DDLFLAA 291 (490)
T ss_dssp --------G-----GGSCEEEEEESSCBCTTCBCEECSSCSCSCHHHHHHHHHHHHSSCCCCHHHHHTTT---HHHHTCB
T ss_pred --------c-----cccceEEEEECCCCCCCCEEEEeecCCCCCHHHHHHHHHCCCCeEeeCCCCCCCCc---ccchhhc
Confidence 0 01248999999999999999999999999999999999999999999999999886 4444443
Q ss_pred ccCCcccccCCCCcccccHHHHHHHHHHHHH---HHHHHhhcCChhHHHHHHHHHHHhhhhhcchhhhHHHHHHhhhcCc
Q 007127 283 FSSNPEFLSLSSDYNFLKDEANQKLTDWMDE---GTSEYLLVGDPESCCQKLENILTQGLQGELLESEKVKIQLNLRLHP 359 (617)
Q Consensus 283 ~~l~~~~~~~~s~s~~~~~~avekL~~~l~e---A~~ey~~~Gdpk~a~~yaelave~gl~e~g~~~edv~~m~~l~lhP 359 (617)
+ +.+.+..+.+..+.++.++ .+..+...|+...|.+..+.+++ .+.-++.|
T Consensus 292 ---~--------~~~~~s~e~v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~---------------~~~~~lg~ 345 (490)
T 3n71_A 292 ---K--------EDPKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLE---------------KQEPVFAD 345 (490)
T ss_dssp ---C--------SSSCCCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---------------HHTTTBCT
T ss_pred ---c--------cCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---------------HHHHhcCC
Confidence 1 1123455566665555443 44667788999888887777654 34566888
Q ss_pred chhhHHHHHHHHHHHHhhh
Q 007127 360 LHHLSLNAYTTLASAYKIR 378 (617)
Q Consensus 360 ~hH~S~~~~~tLa~aY~~~ 378 (617)
.|-....++..|+.+|.-.
T Consensus 346 ~Hp~~a~~~~nLa~~y~~~ 364 (490)
T 3n71_A 346 TNLYVLRLLSIASEVLSYL 364 (490)
T ss_dssp TSHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 9989999999999999865
No 3
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=100.00 E-value=1.1e-37 Score=333.94 Aligned_cols=284 Identities=21% Similarity=0.336 Sum_probs=208.7
Q ss_pred CceEEecCCCCCCccccCCCceEEeeccCCccccCCCcCCCCC------------CcCCCCC------------------
Q 007127 1 MEMRASEEIRQGEDITPPLFPLTFAFHDSLLDGHCSSCFSPLP------------SCCSSLP------------------ 50 (617)
Q Consensus 1 ~GL~AtrdI~~Ge~Il~~e~Pla~vL~d~~l~~~Cs~CF~~lp------------YCs~sC~------------------ 50 (617)
+||+|+++|++||+|+. +.|+++++.+.....+|++||++.+ |||..|+
T Consensus 17 R~l~Atr~i~~Ge~Il~-e~P~~~~~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~eC~~~~~~~ 95 (429)
T 3qwp_A 17 NGLRAVTPLRPGELLFR-SDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCK 95 (429)
T ss_dssp EEEEESSCBCTTCEEEE-ECCSEEEECGGGBTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHTHHHHHHHHHHHHHTT
T ss_pred CeEEeCCCCCCCCEEEe-cCCceeeeccccCCCcCcCCCCcCCCCCcCCCCCCcccCChhhhhhhhhhhHHhhhhHHhcC
Confidence 48999999999999998 8999999998889999999998542 8998884
Q ss_pred --CCCHHHHHHHHHhcCCCCCCCCCChh---hHhhhhhhHHHhccCCChhHHHHHHHHHHHHHHH-hCCCC------Chh
Q 007127 51 --LSSAELRAALHLLHSPLPTTSLPPPP---RLFGLLTNRDKLMSSSDSDVASKIREGAREMARA-RGNLS------DDV 118 (617)
Q Consensus 51 --~s~~~~RlaLRlL~~~~~~~s~~s~~---rl~~Lls~~~~L~s~~~~e~~~~i~~~a~~ma~~-r~~~~------d~~ 118 (617)
.++..+|+++|+|++..... ...++ .+..|.+|.+++. ++..+.+...+..+..+ .+..+ +.+
T Consensus 96 ~~~~~~~~rl~~rill~~~~~~-~~~~~~~~~~~~L~sh~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 170 (429)
T 3qwp_A 96 PRYPPDSVRLLGRVVFKLMDGA-PSESEKLYSFYDLESNINKLT----EDRKEGLRQLVMTFQHFMREEIQDASQLPPAF 170 (429)
T ss_dssp TCCCCHHHHHHHHHHHHHHHSC-CCGGGSSSCGGGCCCCGGGCC----HHHHHHHHHHHHHHHHHTTTTCCSGGGSCTTC
T ss_pred ccCCChHHHHHHHHHHHHhcCC-CCchhhhhhHHHHhhChhhcC----hhHHHHHHHHHHHHHHHHhhhcCccccCCCHH
Confidence 13356899999988753211 01112 3455666665543 23233444444444444 22221 112
Q ss_pred HHHHHHHHhhhcceeeeecCCCCceeEEEEeccccccccCcCCCCceeeccCCCCCCCcccchhhhccCCcccccCcccC
Q 007127 119 AWEEAALCLVMTNAVEVQDDKTGRILGIAVYDKDFSWINHSCSPNACYRFSLSEPNAPSFRNEKKMRIAPHVVFDSTEAE 198 (617)
Q Consensus 119 ~le~~~l~~v~tNsf~v~~~~~g~~lGiavY~P~~S~~NHSC~PNa~~~F~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 198 (617)
.+.. +++++.+|+|+|.+. ++..+|.|+| |.+|+|||||.||+.+.|+
T Consensus 171 ~~~~-~~~~~~~N~f~i~~~-~~~~~g~~l~-~~~s~~NHsC~PN~~~~~~----------------------------- 218 (429)
T 3qwp_A 171 DLFE-AFAKVICNSFTICNA-EMQEVGVGLY-PSISLLNHSCDPNCSIVFN----------------------------- 218 (429)
T ss_dssp CHHH-HHHHHHHHCEEEECT-TSCEEEEEEC-TTGGGCEECSSCSEEEEEE-----------------------------
T ss_pred HHHH-HHHHHHhcCcccccc-ccccceEEEc-hhhHhhCcCCCCCeEEEEe-----------------------------
Confidence 2222 799999999999987 7788999999 9999999999999999884
Q ss_pred CCCCCCccchhccccCcCCCCCEEEEEEecCCCCCCeEEEeccCCCCCHHHHHHHHhcCCCeeEeCcCCCCCCCCchhhh
Q 007127 199 TPGKSDVCISCELKEGSKRHGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRRCSASPPSYVDMA 278 (617)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~G~~~~VrAir~I~~GEEItisYidll~p~~~Rq~~L~~~y~F~C~C~rC~~~~~~~sD~~ 278 (617)
|.+++|||+|+|++||||||+|+|.++|+..||+.|++.|+|.|.|+||..+.. |..
T Consensus 219 --------------------~~~~~~~a~r~I~~GeEl~isY~~~~~~~~~R~~~L~~~~~F~C~C~~C~~~~~---~~~ 275 (429)
T 3qwp_A 219 --------------------GPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQDK---DAD 275 (429)
T ss_dssp --------------------TTEEEEEECSCBCTTCEEEECCSCSSCCHHHHHHHHHHHHCCCCCSHHHHHTTT---HHH
T ss_pred --------------------CCEEEEEEeeeECCCCEEEEEecCCCCCHHHHHHHHhccCCeEeeCCCCCCCcc---ccc
Confidence 458999999999999999999999999999999999999999999999998875 332
Q ss_pred hhhcccCCcccccCCCCcccccHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhhhhhcchhhhHHHHHHhhhcC
Q 007127 279 LEETFSSNPEFLSLSSDYNFLKDEANQKLTDWMDEGTSEYLLVGDPESCCQKLENILTQGLQGELLESEKVKIQLNLRLH 358 (617)
Q Consensus 279 l~~i~~l~~~~~~~~s~s~~~~~~avekL~~~l~eA~~ey~~~Gdpk~a~~yaelave~gl~e~g~~~edv~~m~~l~lh 358 (617)
+... + +...+. .+.+-+.++++...|+.+.|.+..+.+++ .+.-+++
T Consensus 276 ~~~~-------------~----~~~~~~-~~~ll~~ie~~~~~g~~~~a~~~~~~~L~---------------~~~~~lg 322 (429)
T 3qwp_A 276 MLTG-------------D----EQVWKE-VQESLKKIEELKAHWKWEQVLAMCQAIIS---------------SNSERLP 322 (429)
T ss_dssp HTCS-------------C----HHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHT---------------CSSCCCC
T ss_pred cccc-------------c----hhhhHH-HHHHHHHHHHHHhhccHHHHHHHHHHHHH---------------hccCcCC
Confidence 2110 0 111111 12222445667778888888777776544 2345689
Q ss_pred cchhhHHHHHHHHHHHHhhh
Q 007127 359 PLHHLSLNAYTTLASAYKIR 378 (617)
Q Consensus 359 P~hH~S~~~~~tLa~aY~~~ 378 (617)
|.|-....++..|+.+|.-.
T Consensus 323 ~~h~~~~~~~~~L~~~y~~~ 342 (429)
T 3qwp_A 323 DINIYQLKVLDCAMDACINL 342 (429)
T ss_dssp TTSHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhh
Confidence 99999999999999999654
No 4
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}
Probab=99.36 E-value=7.9e-14 Score=140.84 Aligned_cols=86 Identities=21% Similarity=0.380 Sum_probs=67.7
Q ss_pred hhhcceeeeecCCCCceeEEEEeccccccccCcCCCCceeeccCCCCCCCcccchhhhccCCcccccCcccCCCCCCCcc
Q 007127 127 LVMTNAVEVQDDKTGRILGIAVYDKDFSWINHSCSPNACYRFSLSEPNAPSFRNEKKMRIAPHVVFDSTEAETPGKSDVC 206 (617)
Q Consensus 127 ~v~tNsf~v~~~~~g~~lGiavY~P~~S~~NHSC~PNa~~~F~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~ 206 (617)
....|.|.+..+... ...++|...++++||||.||+.+.+.
T Consensus 153 ~~~~n~f~i~~~~~~--~~~~l~~~~ar~iNHSC~PN~~~~~~------------------------------------- 193 (247)
T 3rq4_A 153 RAGENDFSIMYSTRK--RSAQLWLGPAAFINHDCKPNCKFVPA------------------------------------- 193 (247)
T ss_dssp CTTTSCTTEEEETTT--TEEEEEESGGGGCEECSSCSEEEEEE-------------------------------------
T ss_pred hccCCcEEEEecCCc--ccceeecchhhhcCCCCCCCEEEEEe-------------------------------------
Confidence 345899999865222 24568843488999999999976653
Q ss_pred chhccccCcCCCCCEEEEEEecCCCCCCeEEEeccCCCCCHHHHHHHHhcCCCeeEeCcCCCCCCC
Q 007127 207 ISCELKEGSKRHGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRRCSASPP 272 (617)
Q Consensus 207 ~~~~~~~~~~~~G~~~~VrAir~I~~GEEItisYidll~p~~~Rq~~L~~~y~F~C~C~rC~~~~~ 272 (617)
.+.++.|+|+|+|++|||||++|++.++ ..++|.|.|.+|..+..
T Consensus 194 -----------~~~~i~v~A~rdI~~GEElt~~Y~~~~~----------~~~~f~C~C~~C~~~~~ 238 (247)
T 3rq4_A 194 -----------DGNAACVKVLRDIEPGDEVTCFYGEGFF----------GEKNEHCECHTCERKGE 238 (247)
T ss_dssp -----------TTTEEEEEESSCBCTTCBCEECCCTTSS----------SGGGTTCCCHHHHHHTC
T ss_pred -----------CCCEEEEEECCcCCCCCEEEEecCchhc----------CCCCCEEECCCCCCCCC
Confidence 2458999999999999999999999866 45789999999987654
No 5
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}
Probab=99.17 E-value=7e-12 Score=128.28 Aligned_cols=87 Identities=22% Similarity=0.362 Sum_probs=65.3
Q ss_pred HHhhhcceeeeecCCCCceeEEEEeccccccccCcCCCCceeeccCCCCCCCcccchhhhccCCcccccCcccCCCCCCC
Q 007127 125 LCLVMTNAVEVQDDKTGRILGIAVYDKDFSWINHSCSPNACYRFSLSEPNAPSFRNEKKMRIAPHVVFDSTEAETPGKSD 204 (617)
Q Consensus 125 l~~v~tNsf~v~~~~~g~~lGiavY~P~~S~~NHSC~PNa~~~F~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~ 204 (617)
+.....|.|.|........ .++|+..++++||||.||+.+.++
T Consensus 180 ~~~~~~~dF~i~~s~~~~~--a~~~g~~arfiNHSC~PN~~~~~~----------------------------------- 222 (273)
T 3s8p_A 180 LLRHGENDFSVMYSTRKNC--AQLWLGPAAFINHDCRPNCKFVST----------------------------------- 222 (273)
T ss_dssp HCCTTTSCTTEEEETTTTE--EEEEESGGGGCEECSSCSEEEEEE-----------------------------------
T ss_pred Hhhhcccccceeccccccc--cceecchHHhhCCCCCCCeEEEEc-----------------------------------
Confidence 4445578888876522222 235556679999999999987653
Q ss_pred ccchhccccCcCCCCCEEEEEEecCCCCCCeEEEeccCCCCCHHHHHHHHhcCCCeeEeCcCCCCCC
Q 007127 205 VCISCELKEGSKRHGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRRCSASP 271 (617)
Q Consensus 205 ~~~~~~~~~~~~~~G~~~~VrAir~I~~GEEItisYidll~p~~~Rq~~L~~~y~F~C~C~rC~~~~ 271 (617)
...++.++|+|+|++|||||++|.+.++. .++|.|.|.+|.-..
T Consensus 223 -------------~~~~i~i~A~RdI~~GEELt~~Y~~~~~~----------~~~f~C~C~~c~crG 266 (273)
T 3s8p_A 223 -------------GRDTACVKALRDIEPGEEISCYYGDGFFG----------ENNEFCECYTCERRG 266 (273)
T ss_dssp -------------ETTEEEEEESSCBCTTCBCEECCCTTTTS----------GGGTTCCCHHHHHHT
T ss_pred -------------CCCEEEEEECceeCCCCEEEEecCchhcC----------CCCeEEECCCCcCCC
Confidence 12489999999999999999999988653 468999999996543
No 6
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*
Probab=99.00 E-value=7.3e-11 Score=105.63 Aligned_cols=54 Identities=31% Similarity=0.324 Sum_probs=45.7
Q ss_pred EEEeccccccccCcCCCCceeeccCCCCCCCcccchhhhccCCcccccCcccCCCCCCCccchhccccCcCCCCCEEEEE
Q 007127 146 IAVYDKDFSWINHSCSPNACYRFSLSEPNAPSFRNEKKMRIAPHVVFDSTEAETPGKSDVCISCELKEGSKRHGPRIIVR 225 (617)
Q Consensus 146 iavY~P~~S~~NHSC~PNa~~~F~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Vr 225 (617)
..++ |.++++||||.||+.+.++. .+.++.++
T Consensus 59 ~~~~-~~~~~~NHsc~pN~~~~~~~-----------------------------------------------~~~~~~~~ 90 (119)
T 1n3j_A 59 AMAL-GFGAIFNHSKDPNARHELTA-----------------------------------------------GLKRMRIF 90 (119)
T ss_dssp EEES-SSHHHHHSCSSCCCEEEECS-----------------------------------------------SSSCEEEE
T ss_pred cccc-CceeeeccCCCCCeeEEEEC-----------------------------------------------CCeEEEEE
Confidence 4456 88999999999999988741 24588999
Q ss_pred EecCCCCCCeEEEeccCCCCCH
Q 007127 226 SIKPINKGEEVTVAYTDLLQPK 247 (617)
Q Consensus 226 Air~I~~GEEItisYidll~p~ 247 (617)
|+|+|++|||||++|.+..+..
T Consensus 91 A~rdI~~GeElt~~Y~~~~~~~ 112 (119)
T 1n3j_A 91 TIKPIAIGEEITISYGDDYWLS 112 (119)
T ss_dssp ECSCBCSSEEECCCCCCCCCCC
T ss_pred EccccCCCCEEEEecCchhhcC
Confidence 9999999999999999988754
No 7
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*
Probab=98.89 E-value=8e-10 Score=107.60 Aligned_cols=41 Identities=24% Similarity=0.621 Sum_probs=30.3
Q ss_pred CEEEEEEecCCCCCCeEEEeccCCCCCHHHHHHHHhcCCCeeEeCc--CCCC
Q 007127 220 PRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCR--RCSA 269 (617)
Q Consensus 220 ~~~~VrAir~I~~GEEItisYidll~p~~~Rq~~L~~~y~F~C~C~--rC~~ 269 (617)
+++.++|+|+|++|||||++|.+..+.. .+.|.|.|. .|..
T Consensus 147 ~~i~i~A~rdI~~GEELt~dY~~~~~~~---------~~~~~C~Cgs~~Crg 189 (192)
T 2w5y_A 147 KHIVIFAMRKIYRGEELTYDYKFPIEDA---------SNKLPCNCGAKKCRK 189 (192)
T ss_dssp EEEEEEESSCBCTTCEEEECCCC----------------CCBCCCCCTTCCS
T ss_pred EEEEEEECcccCCCCEEEEEcCCchhcC---------CCCceeECCCCCCcC
Confidence 5889999999999999999999876531 378999994 6653
No 8
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*
Probab=98.80 E-value=2.3e-09 Score=116.06 Aligned_cols=84 Identities=21% Similarity=0.279 Sum_probs=66.1
Q ss_pred HHHhhhcceeeeecCC---CCceeEEEEeccccccccCcCCCCceeeccCCCCCCCcccchhhhccCCcccccCcccCCC
Q 007127 124 ALCLVMTNAVEVQDDK---TGRILGIAVYDKDFSWINHSCSPNACYRFSLSEPNAPSFRNEKKMRIAPHVVFDSTEAETP 200 (617)
Q Consensus 124 ~l~~v~tNsf~v~~~~---~g~~lGiavY~P~~S~~NHSC~PNa~~~F~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~ 200 (617)
+.+.|.+-+|.+.... +....+.++. |.+.++||+|.||+.+.|+
T Consensus 192 A~~~v~SRsf~~~~~~~~~~~~~~~~~Lv-P~~D~~NH~~~~~~~~~~~------------------------------- 239 (449)
T 3qxy_A 192 LVALVMAYSFQEPLEEEEDEKEPNSPVMV-PAADILNHLANHNANLEYS------------------------------- 239 (449)
T ss_dssp HHHHHHHHCBCCCCC-----CCCCCCBBC-TTGGGCEECSSCSEEEEEC-------------------------------
T ss_pred HHHHHHHHhcccccCcccccccCCceeEe-ecHHHhcCCCCCCeEEEEe-------------------------------
Confidence 7788899999886421 0112345688 9999999999999998873
Q ss_pred CCCCccchhccccCcCCCCCEEEEEEecCCCCCCeEEEeccCCCCCHHHHHHHHhcCCCeeEe
Q 007127 201 GKSDVCISCELKEGSKRHGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCH 263 (617)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~G~~~~VrAir~I~~GEEItisYidll~p~~~Rq~~L~~~y~F~C~ 263 (617)
+..++++|.|+|++||||+|+|++. + +.+|...|||...
T Consensus 240 ------------------~~~~~~~a~~~i~~Geei~~~YG~~--~----n~~ll~~YGF~~~ 278 (449)
T 3qxy_A 240 ------------------ANCLRMVATQPIPKGHEIFNTYGQM--A----NWQLIHMYGFVEP 278 (449)
T ss_dssp ------------------SSEEEEEESSCBCTTCEEEECCSSC--C----HHHHHHHHSCCCC
T ss_pred ------------------CCeEEEEECCCcCCCchhhccCCCC--C----HHHHHHhCCCCCC
Confidence 2368999999999999999999983 2 5677789999984
No 9
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}
Probab=98.74 E-value=7.3e-09 Score=103.25 Aligned_cols=64 Identities=22% Similarity=0.327 Sum_probs=48.8
Q ss_pred EEeccccccccCcCCCCceeeccCCCCCCCcccchhhhccCCcccccCcccCCCCCCCccchhccccCcCCCCCEEEEEE
Q 007127 147 AVYDKDFSWINHSCSPNACYRFSLSEPNAPSFRNEKKMRIAPHVVFDSTEAETPGKSDVCISCELKEGSKRHGPRIIVRS 226 (617)
Q Consensus 147 avY~P~~S~~NHSC~PNa~~~F~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~VrA 226 (617)
..++..+.++||||.||+.+.+... ...+++.++|
T Consensus 160 ~~~Gn~aRfiNHSC~PN~~~~~~~~---------------------------------------------~~~~~i~~~A 194 (232)
T 3ooi_A 160 GPKGNYARFMNHCCQPNCETQKWSV---------------------------------------------NGDTRVGLFA 194 (232)
T ss_dssp EEEECGGGGCEECSSCSEEEEEEEE---------------------------------------------TTEEEEEEEE
T ss_pred cccccccccccccCCCCeEEEEEEE---------------------------------------------CCceEEEEEE
Confidence 3454455678999999998765311 1235899999
Q ss_pred ecCCCCCCeEEEeccCCCCCHHHHHHHHhcCCCeeEeCc
Q 007127 227 IKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCR 265 (617)
Q Consensus 227 ir~I~~GEEItisYidll~p~~~Rq~~L~~~y~F~C~C~ 265 (617)
+|+|++|||||++|....+ ....|.|.|.
T Consensus 195 ~RdI~~GEELT~dY~~~~~----------~~~~~~C~CG 223 (232)
T 3ooi_A 195 LSDIKAGTELTFNYNLECL----------GNGKTVCKCG 223 (232)
T ss_dssp SSCBCTTCBCEECCTTCST----------TCTTCBCCCC
T ss_pred CCccCCCCEEEEECCCCcC----------CCCCcEeECC
Confidence 9999999999999987653 3457999995
No 10
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*
Probab=98.73 E-value=2.3e-09 Score=100.48 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=30.7
Q ss_pred CCEEEEEEecCCCCCCeEEEeccCCCCCHHHHHHHHh
Q 007127 219 GPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELW 255 (617)
Q Consensus 219 G~~~~VrAir~I~~GEEItisYidll~p~~~Rq~~L~ 255 (617)
.+++.+.|+|+|++|||||++|.+.......|+..|+
T Consensus 129 ~~~i~~~A~rdI~~GEELt~dY~~~~~~~~~~~~~L~ 165 (166)
T 3f9x_A 129 VPHLILIASRDIAAGEELLFDYGDRSKASIEAHPWLK 165 (166)
T ss_dssp EEEEEEEESSCBCTTCBCEECCCCCCHHHHHHCGGGG
T ss_pred eeEEEEEECCcCCCCCEEEEEcCCChhhHhhhCchhc
Confidence 3689999999999999999999998766666655553
No 11
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}
Probab=98.66 E-value=8.2e-09 Score=102.09 Aligned_cols=43 Identities=26% Similarity=0.338 Sum_probs=34.2
Q ss_pred CCEEEEEEecCCCCCCeEEEeccCCCCCHHHHHHHHhcCCCeeEeCcC--CCCC
Q 007127 219 GPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRR--CSAS 270 (617)
Q Consensus 219 G~~~~VrAir~I~~GEEItisYidll~p~~~Rq~~L~~~y~F~C~C~r--C~~~ 270 (617)
.+++.++|+|+|++|||||++|.+..+.. ...|.|.|.. |..-
T Consensus 168 ~~~i~~~A~RdI~~GEELT~dY~~~~~~~---------~~~~~C~CGs~~Crg~ 212 (222)
T 3ope_A 168 VYRIGLYALKDMPAGTELTYDYNFHSFNV---------EKQQLCKCGFEKCRGI 212 (222)
T ss_dssp EEEEEEEESSCBCTTCBCEECTTSSBCCC---------SCCCBCCCCCTTCCSB
T ss_pred eEEEEEEECCccCCCCEEEEECCCcccCC---------cCCCEeeCCCcCCCCc
Confidence 46899999999999999999999876532 3468888874 6553
No 12
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*
Probab=98.61 E-value=1.9e-08 Score=107.73 Aligned_cols=91 Identities=19% Similarity=0.204 Sum_probs=61.8
Q ss_pred HHHhhhcceeeeecCCCCceeEEEEeccccccccCcCCCCc-eeeccCCCCCCCcccchhhhccCCcccccCcccCCCCC
Q 007127 124 ALCLVMTNAVEVQDDKTGRILGIAVYDKDFSWINHSCSPNA-CYRFSLSEPNAPSFRNEKKMRIAPHVVFDSTEAETPGK 202 (617)
Q Consensus 124 ~l~~v~tNsf~v~~~~~g~~lGiavY~P~~S~~NHSC~PNa-~~~F~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ 202 (617)
+++.|.+.+|.+... . +.++. |.+.++||+|.||+ .+.|...+.
T Consensus 167 A~~~v~SRaf~~~~~-~----~~~Lv-P~~D~~NH~~~~~~~~~~~~~~~~----------------------------- 211 (440)
T 2h21_A 167 AFGILRSRAFSRLRN-E----NLVVV-PMADLINHSAGVTTEDHAYEVKGA----------------------------- 211 (440)
T ss_dssp HHHHHHHHCBCCC--------CCBCC-SSTTSCEECTTCCCCCCEEEC--------------------------------
T ss_pred HHHHhcccceeccCC-C----ceEEe-echHhhcCCCCcccccceeeecCc-----------------------------
Confidence 788999999986543 2 24577 99999999999984 223321000
Q ss_pred CCccchhccccCcCCCCCEEEEEEecCCCCCCeEEEeccCCCCCHHHHHHHHhcCCCeeEeC
Q 007127 203 SDVCISCELKEGSKRHGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHC 264 (617)
Q Consensus 203 ~~~~~~~~~~~~~~~~G~~~~VrAir~I~~GEEItisYidll~p~~~Rq~~L~~~y~F~C~C 264 (617)
.|.-..+..++++|.++|++||||+|+|++.. + +.+|...|||...-
T Consensus 212 ----------~~~~~~~~~~~l~a~~~i~~Geei~~sYG~~~-~----N~~LL~~YGFv~~~ 258 (440)
T 2h21_A 212 ----------AGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNK-S----NAELALDYGFIEPN 258 (440)
T ss_dssp -----------------CEEEEEESSCBCTTSBCEECSCTTC-C----HHHHHHHSSCCCSC
T ss_pred ----------ccccCCCceEEEEECCCCCCCCEEEEeCCCCC-C----HHHHHHhCCCCcCC
Confidence 00001234789999999999999999999853 1 35677789998753
No 13
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}
Probab=98.60 E-value=3.2e-08 Score=108.58 Aligned_cols=84 Identities=18% Similarity=0.270 Sum_probs=68.0
Q ss_pred HHHhhhcceeeeecCCCCceeEEEEeccccccccCcCCCCc-eeeccCCCCCCCcccchhhhccCCcccccCcccCCCCC
Q 007127 124 ALCLVMTNAVEVQDDKTGRILGIAVYDKDFSWINHSCSPNA-CYRFSLSEPNAPSFRNEKKMRIAPHVVFDSTEAETPGK 202 (617)
Q Consensus 124 ~l~~v~tNsf~v~~~~~g~~lGiavY~P~~S~~NHSC~PNa-~~~F~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ 202 (617)
+++.|.+++|.+... +|...+.+++ |.+.++||+|.||. .|.+
T Consensus 246 A~~~v~SRa~~~~~~-~g~~~~~~Lv-P~~Dm~NH~~~~~~~~~~~---------------------------------- 289 (497)
T 3smt_A 246 AVSSVMTRQNQIPTE-DGSRVTLALI-PLWDMCNHTNGLITTGYNL---------------------------------- 289 (497)
T ss_dssp HHHHHHHHCEEEECT-TSSSEEEEEC-TTGGGCEECSCSEEEEEET----------------------------------
T ss_pred hhheEecccccccCc-ccccccceee-chHHhhcCCCcccceeeec----------------------------------
Confidence 788999999999876 5655677899 99999999999964 3322
Q ss_pred CCccchhccccCcCCCCCEEEEEEecCCCCCCeEEEeccCCCCCHHHHHHHHhcCCCeeEeC
Q 007127 203 SDVCISCELKEGSKRHGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHC 264 (617)
Q Consensus 203 ~~~~~~~~~~~~~~~~G~~~~VrAir~I~~GEEItisYidll~p~~~Rq~~L~~~y~F~C~C 264 (617)
.+..+.++|.++|++||||+|+|++. .+.+|...|||.+.-
T Consensus 290 ---------------~~~~~~~~a~~~i~~Geei~isYG~~------~n~~Ll~~YGFv~~~ 330 (497)
T 3smt_A 290 ---------------EDDRCECVALQDFRAGEQIYIFYGTR------SNAEFVIHSGFFFDN 330 (497)
T ss_dssp ---------------TTTEEEEEESSCBCTTCEEEECCCSC------CHHHHHHHHSCCCTT
T ss_pred ---------------cCCeEEEEeCCccCCCCEEEEeCCCC------ChHHHHHHCCCCCCC
Confidence 12367899999999999999999985 246777899999753
No 14
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing protein 2, S-adenos methionine, structural genomics, structural genomics consor SGC; HET: SAM; 1.99A {Homo sapiens} PDB: 4fmu_A* 4h12_A*
Probab=98.49 E-value=4.9e-08 Score=100.06 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=31.2
Q ss_pred CEEEEEEecCCCCCCeEEEeccCCCCCHHHHHHHHhcCCCeeEeCcC
Q 007127 220 PRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRR 266 (617)
Q Consensus 220 ~~~~VrAir~I~~GEEItisYidll~p~~~Rq~~L~~~y~F~C~C~r 266 (617)
+++.+.|+|+|++|||||++|.... +....|.|.|..
T Consensus 213 ~ri~~fA~RdI~~GEELT~dY~~~~----------~~~~~~~C~CGs 249 (278)
T 3h6l_A 213 LRVGFFTTKLVPSGSELTFDYQFQR----------YGKEAQKCFCGS 249 (278)
T ss_dssp EEEEEEESSCBCTTCBCEECCTTTE----------ECSSCEECCCCC
T ss_pred eEEEEEECCccCCCCEEEEecCCCc----------CCCCCcEeECCC
Confidence 5899999999999999999998653 345679999964
No 15
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*
Probab=98.47 E-value=5.6e-08 Score=99.93 Aligned_cols=39 Identities=28% Similarity=0.502 Sum_probs=30.5
Q ss_pred CCEEEEEEecCCCCCCeEEEeccCCCCCHHHHHHHHhcCCCeeEeCc
Q 007127 219 GPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCR 265 (617)
Q Consensus 219 G~~~~VrAir~I~~GEEItisYidll~p~~~Rq~~L~~~y~F~C~C~ 265 (617)
.+++.+.|+|+|++|||||+.|.+..+. . ....|.|.|.
T Consensus 242 ~~~i~~~A~RdI~~GEELT~dYg~~~~~-------~-~~~~~~C~CG 280 (287)
T 3hna_A 242 FPRIAFFSTRLIEAGEQLGFDYGERFWD-------I-KGKLFSCRCG 280 (287)
T ss_dssp CCEEEEEESSCBCTTCBCEECCCHHHHH-------H-HTTTCCCCCC
T ss_pred ceeEEEEEcceeCCCCeEEEeCCCcccc-------c-CCCcCEeeCC
Confidence 4699999999999999999999863321 1 2357999994
No 16
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Probab=98.39 E-value=1.5e-07 Score=97.07 Aligned_cols=46 Identities=24% Similarity=0.268 Sum_probs=22.0
Q ss_pred CEEEEEEecCCCCCCeEEEeccCCCCCHHH-HHHHHhcCCCeeEeCc
Q 007127 220 PRIIVRSIKPINKGEEVTVAYTDLLQPKGM-RQSELWSKYQFVCHCR 265 (617)
Q Consensus 220 ~~~~VrAir~I~~GEEItisYidll~p~~~-Rq~~L~~~y~F~C~C~ 265 (617)
+++.+.|+|+|++|||||+.|.+.++.... +....+.+..|.|.|.
T Consensus 247 ~~i~~~A~rdI~~GeELt~dY~~~~~~~~~~~~~~~k~~~~~~C~CG 293 (302)
T 1ml9_A 247 HDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLCG 293 (302)
T ss_dssp CEEEEEESSCBCTTCEEEECTTC------------------------
T ss_pred eEEEEEECCCcCCCCEEEEEECCCccccccccccccccCCCcEeeCC
Confidence 589999999999999999999987654321 1111222356899984
No 17
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}
Probab=98.38 E-value=3.6e-07 Score=94.05 Aligned_cols=51 Identities=24% Similarity=0.417 Sum_probs=34.8
Q ss_pred CEEEEEEecCCCCCCeEEEeccCCCCCHHHH--HHHH-hcCCCeeEeCc--CCCCC
Q 007127 220 PRIIVRSIKPINKGEEVTVAYTDLLQPKGMR--QSEL-WSKYQFVCHCR--RCSAS 270 (617)
Q Consensus 220 ~~~~VrAir~I~~GEEItisYidll~p~~~R--q~~L-~~~y~F~C~C~--rC~~~ 270 (617)
+++.++|+|+|++|||||+.|.+..+..... ++.+ ..+..|.|.|. .|..-
T Consensus 229 ~~i~~~A~rdI~~GEELt~dY~~~~~~~~~~~~~~~~~~~~~~~~C~CGs~~CrG~ 284 (290)
T 3bo5_A 229 PKLALFAAKDIVPEEELSYDYSGRYLNLTVSASKERLDHGKLRKPCYCGAKSCTAF 284 (290)
T ss_dssp CEEEEEESSCBCTTCEEEECTTSCTTCCSSSEEEEEEECSSCCCBCCCCCTTCCSB
T ss_pred eEEEEEEccccCCCCEEEEECCCccccccccccccccccCCCCccccCCCcCCCcc
Confidence 5899999999999999999999876532100 0001 11356899995 66543
No 18
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=98.36 E-value=1.6e-07 Score=95.49 Aligned_cols=30 Identities=37% Similarity=0.628 Sum_probs=24.7
Q ss_pred CCEEEEEEecCCCCCCeEEEeccCCCCCHH
Q 007127 219 GPRIIVRSIKPINKGEEVTVAYTDLLQPKG 248 (617)
Q Consensus 219 G~~~~VrAir~I~~GEEItisYidll~p~~ 248 (617)
|+.+.++|+|+|++|||||++|.....+..
T Consensus 209 ~~~i~i~A~RdI~~GEELt~dYg~~~~~~~ 238 (261)
T 2f69_A 209 GPIKCIRTLRAVEADEELTVAYGYDHSPPG 238 (261)
T ss_dssp EEEEEEEESSCBCTTCEEEECCCCCSCCC-
T ss_pred CcEEEEEECcccCCCCEEEEEcCCcccccc
Confidence 445699999999999999999998776443
No 19
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}
Probab=98.32 E-value=4.8e-07 Score=93.61 Aligned_cols=47 Identities=32% Similarity=0.397 Sum_probs=30.6
Q ss_pred CCEEEEEEecCCCCCCeEEEeccCCCCCHHH----HHHHHhcCCCeeEeCc
Q 007127 219 GPRIIVRSIKPINKGEEVTVAYTDLLQPKGM----RQSELWSKYQFVCHCR 265 (617)
Q Consensus 219 G~~~~VrAir~I~~GEEItisYidll~p~~~----Rq~~L~~~y~F~C~C~ 265 (617)
.+++.+.|+|+|++|||||+.|.+......+ ....-+....|.|.|.
T Consensus 241 ~~~i~~~A~rdI~~GEELt~dY~~~~~~~~~~~~~d~~~~~~~~~~~C~CG 291 (300)
T 2r3a_A 241 LPRIALFSTRTINAGEELTFDYQMKGSGDISSDSIDHSPAKKRVRTVCKCG 291 (300)
T ss_dssp SCEEEEEESSCBCTTCEEEECGGGSSCC--------------CCCCBCCCC
T ss_pred ceEEEEEEccCCCCCCEEEEECCCCccccccccccccccccccCCCEeeCC
Confidence 3589999999999999999999987421110 0011122356899994
No 20
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A
Probab=98.31 E-value=3.9e-07 Score=94.11 Aligned_cols=27 Identities=26% Similarity=0.196 Sum_probs=24.5
Q ss_pred CCEEEEEEecCCCCCCeEEEeccCCCC
Q 007127 219 GPRIIVRSIKPINKGEEVTVAYTDLLQ 245 (617)
Q Consensus 219 G~~~~VrAir~I~~GEEItisYidll~ 245 (617)
-+++.++|+|+|++|||||++|.+..+
T Consensus 239 ~~~i~~~A~rdI~~GEELt~dY~~~~~ 265 (299)
T 1mvh_A 239 IYDLAFFAIKDIQPLEELTFDYAGAKD 265 (299)
T ss_dssp SCEEEEEESSCBCTTCBCEECCCTTSS
T ss_pred ceEEEEEEccCcCCCCEEEEEcCCccc
Confidence 358999999999999999999998766
No 21
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=98.26 E-value=3e-07 Score=93.81 Aligned_cols=27 Identities=33% Similarity=0.530 Sum_probs=22.5
Q ss_pred CCEEEEEEecCCCCCCeEEEeccCCCC
Q 007127 219 GPRIIVRSIKPINKGEEVTVAYTDLLQ 245 (617)
Q Consensus 219 G~~~~VrAir~I~~GEEItisYidll~ 245 (617)
++.+.++|+|+|++|||||++|.....
T Consensus 263 ~~~~~~~a~r~I~~geElt~~Yg~~~~ 289 (293)
T 1h3i_A 263 GPIKCIRTLRAVEADEELTVAYGYDHS 289 (293)
T ss_dssp EEEEEEEESSCBCTTCEEEEEEETTBC
T ss_pred CcEEEEEECCccCCCCEEEEecCCCCC
Confidence 434589999999999999999986543
No 22
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*
Probab=97.82 E-value=1.1e-05 Score=75.70 Aligned_cols=27 Identities=37% Similarity=0.564 Sum_probs=24.4
Q ss_pred CEEEEEEecCCCCCCeEEEeccCCCCC
Q 007127 220 PRIIVRSIKPINKGEEVTVAYTDLLQP 246 (617)
Q Consensus 220 ~~~~VrAir~I~~GEEItisYidll~p 246 (617)
.++.++|+|+|++|||||+.|.+-..|
T Consensus 121 ~~I~~~A~RdI~~GEEL~~dY~~~~~~ 147 (149)
T 2qpw_A 121 RAIYYKTLKPIAPGEELLVWYNGEDNP 147 (149)
T ss_dssp TEEEEEESSCBCTTCBCEECCCCCCCC
T ss_pred CEEEEEEccCCCCCCEEEEccCCccCC
Confidence 489999999999999999999987654
No 23
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}
Probab=96.16 E-value=0.0029 Score=59.07 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=22.5
Q ss_pred CCEEEEEEecCCCCCCeEEEeccCCCC
Q 007127 219 GPRIIVRSIKPINKGEEVTVAYTDLLQ 245 (617)
Q Consensus 219 G~~~~VrAir~I~~GEEItisYidll~ 245 (617)
+.++.++|+|+|++||||++.|.+.+.
T Consensus 118 ~~~I~~~a~rdI~pGeELlv~Yg~~y~ 144 (151)
T 3db5_A 118 DGKIFFCTSQDIPPENELLFYYSRDYA 144 (151)
T ss_dssp TTEEEEEESSCBCTTCBCEEEECC---
T ss_pred CCEEEEEEccccCCCCEEEEecCHHHH
Confidence 458999999999999999999998763
No 24
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}
Probab=95.70 E-value=0.0061 Score=58.33 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=22.6
Q ss_pred CCEEEEEEecCCCCCCeEEEeccCCC
Q 007127 219 GPRIIVRSIKPINKGEEVTVAYTDLL 244 (617)
Q Consensus 219 G~~~~VrAir~I~~GEEItisYidll 244 (617)
+.++.++|+|+|++||||++.|.+-+
T Consensus 122 ~~~I~~~a~RdI~pGeELlvwYg~~y 147 (170)
T 3ep0_A 122 GTSIFYKAIEMIPPDQELLVWYGNSH 147 (170)
T ss_dssp TTEEEEEESSCBCTTCBCEEEECC--
T ss_pred CCEEEEEECcCcCCCCEEEEeeCHHH
Confidence 45899999999999999999999954
No 25
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}
Probab=94.79 E-value=0.013 Score=57.23 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=22.7
Q ss_pred CCEEEEEEecCCCCCCeEEEeccCC
Q 007127 219 GPRIIVRSIKPINKGEEVTVAYTDL 243 (617)
Q Consensus 219 G~~~~VrAir~I~~GEEItisYidl 243 (617)
+.++.++|+|+|+|||||++.|.+.
T Consensus 152 ~~~I~y~a~RdI~pGeELlvwYg~~ 176 (196)
T 3dal_A 152 GMNIYFYTIKPIPANQELLVWYCRD 176 (196)
T ss_dssp TTEEEEEESSCBCTTCBCEEEECHH
T ss_pred CCEEEEEECcccCCCCEEEEecCHH
Confidence 4589999999999999999999963
No 26
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens}
Probab=93.79 E-value=0.03 Score=52.49 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.9
Q ss_pred CCEEEEEEecCCCCCCeEEEeccCCC
Q 007127 219 GPRIIVRSIKPINKGEEVTVAYTDLL 244 (617)
Q Consensus 219 G~~~~VrAir~I~~GEEItisYidll 244 (617)
+.++..+++|+|.+|||+++-|.+.+
T Consensus 117 ~~~I~~~~~r~I~pGeELlv~Y~~~y 142 (152)
T 3ihx_A 117 GHHVYYTTIKNVEPKQELKVWYAASY 142 (152)
T ss_dssp SSSEEEEESSCBCTTCBCCEEECHHH
T ss_pred CCeEEEEEeeecCCCCEEEEechHHH
Confidence 45889999999999999999998643
No 27
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}
Probab=92.49 E-value=0.059 Score=54.22 Aligned_cols=39 Identities=21% Similarity=0.257 Sum_probs=25.6
Q ss_pred CCEEEEEEecCCCCCCeEEEeccCCCCCHHHHHHHHhcCCCeeEeCcCC
Q 007127 219 GPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRRC 267 (617)
Q Consensus 219 G~~~~VrAir~I~~GEEItisYidll~p~~~Rq~~L~~~y~F~C~C~rC 267 (617)
+.++.++|+|+|.+|||+++-|.+.+ ++..+-.|.+.-|
T Consensus 161 ~~~Iyy~a~RdI~pGeELlVwYg~~Y----------~~~l~~~~~~~~~ 199 (237)
T 3ray_A 161 SERIYFRACRDIRPGEWLRVWYSEDY----------MKRLHSMSQETIH 199 (237)
T ss_dssp TTEEEEEESSCBCTTCBCEEEECHHH----------HHHHCC-------
T ss_pred CCEEEEEEccccCCCCEEEEeeCHHH----------HHHhcccccchhc
Confidence 45899999999999999999999754 2334445666666
No 28
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=92.34 E-value=0.019 Score=45.98 Aligned_cols=35 Identities=20% Similarity=0.131 Sum_probs=15.5
Q ss_pred cCCCCCCccccCCCceEEeeccCCccccCCCcCCCCC----------CcCCCCCC
Q 007127 7 EEIRQGEDITPPLFPLTFAFHDSLLDGHCSSCFSPLP----------SCCSSLPL 51 (617)
Q Consensus 7 rdI~~Ge~Il~~e~Pla~vL~d~~l~~~Cs~CF~~lp----------YCs~sC~~ 51 (617)
++|++||+|+. +.| ....|..|++... ||+..|+.
T Consensus 2 ~~~~~G~~il~-~~~---------~~~~C~~C~~~~~~~Cs~C~~~~YCs~~CQ~ 46 (64)
T 2odd_A 2 NLYFQGENLYF-QGD---------SSESCWNCGRKASETCSGCNTARYCGSFCQH 46 (64)
T ss_dssp --------------C---------CSSSCTTTSSCCCEEETTTSCCEESSHHHHH
T ss_pred CcCCCCCEEee-CCC---------CCCcCccccCCCcccCCCCCChhhCCHHHHH
Confidence 68999999998 788 2468888887543 88888853
No 29
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=47.33 E-value=11 Score=33.89 Aligned_cols=74 Identities=19% Similarity=0.270 Sum_probs=50.4
Q ss_pred cchhHHHHHHHHhhhhhcccccchhhhc----ccc-hhhhhccCCCccccccccCCccccCcCCcccccccccchhhhhh
Q 007127 487 RNADFQIICNEFLACITNMTRKVWGFLT----HGC-GYLQMLKDPIDFSWLRQSSNLCHTPCCSDEESNKETGYQESICR 561 (617)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~w~fl~----~~~-~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (617)
....++..|++++.-+... ...|+|+. .+. .|.+.||+||||+-+...... ..|.
T Consensus 18 ~~~~l~~~~~~il~~l~~~-~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~--------------~~Y~----- 77 (135)
T 3mb3_A 18 DIQAWKKQCEELLNLIFQC-EDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEA--------------GNYE----- 77 (135)
T ss_dssp CSSTHHHHHHHHHHHHHHS-GGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHT--------------TCCS-----
T ss_pred CHHHHHHHHHHHHHHHHhC-CCChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhC--------------CCCC-----
Confidence 3467888888888888765 45899985 344 499999999999966554110 0111
Q ss_pred cccccccccccchhhhhhhHHHhh
Q 007127 562 RVMQRCDGEERITIFQLGVHCIAY 585 (617)
Q Consensus 562 ~~~~~~~~~~~~~~~~l~~~c~~~ 585 (617)
..++-...|-++--.|.+|
T Consensus 78 -----~~~~f~~D~~li~~Na~~y 96 (135)
T 3mb3_A 78 -----SPMELCKDVRLIFSNSKAY 96 (135)
T ss_dssp -----SHHHHHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHHHHHH
Confidence 4455566677777788887
No 30
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=43.69 E-value=12 Score=32.98 Aligned_cols=83 Identities=19% Similarity=0.354 Sum_probs=51.5
Q ss_pred HHHHHHhhhhhcccc--cchhhhc------ccch-hhhhccCCCccccccccCCccccCcCCcccccccccchhhhhhcc
Q 007127 493 IICNEFLACITNMTR--KVWGFLT------HGCG-YLQMLKDPIDFSWLRQSSNLCHTPCCSDEESNKETGYQESICRRV 563 (617)
Q Consensus 493 ~~~~~~~~~~~~~~~--~~w~fl~------~~~~-~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (617)
..|.+++.-+.+... -.|+|+. .|.| |.+.||+||||+-+.+.... ..|
T Consensus 12 ~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~--------------~~Y-------- 69 (120)
T 3jvl_A 12 KCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLES--------------REY-------- 69 (120)
T ss_dssp HHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHT--------------TCC--------
T ss_pred HHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHcc--------------CCC--------
Confidence 455666666654332 2799975 3444 99999999999966554110 011
Q ss_pred cccccccccchhhhhhhHHHhhhcccchhccCCCCchhhhHhhh
Q 007127 564 MQRCDGEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKIKNV 607 (617)
Q Consensus 564 ~~~~~~~~~~~~~~l~~~c~~~~~~l~~~cy~~~~~~~~~~~~~ 607 (617)
+..++-...|-++--.|.+| +||.|.....++.|
T Consensus 70 --~~~~~f~~D~~li~~Na~~y--------N~~~s~~~~~A~~L 103 (120)
T 3jvl_A 70 --RDAQEFGADVRLMFSNCYKY--------NPPDHEVVAMARKL 103 (120)
T ss_dssp --CSHHHHHHHHHHHHHHHHHH--------SCTTSHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHH--------CCCCCHHHHHHHHH
Confidence 14455666677777788887 57777665544443
No 31
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=43.54 E-value=14 Score=32.27 Aligned_cols=83 Identities=18% Similarity=0.200 Sum_probs=53.3
Q ss_pred HHHHHHHhhhhhccc-----ccchhhhc----ccch-hhhhccCCCccccccccCCccccCcCCcccccccccchhhhhh
Q 007127 492 QIICNEFLACITNMT-----RKVWGFLT----HGCG-YLQMLKDPIDFSWLRQSSNLCHTPCCSDEESNKETGYQESICR 561 (617)
Q Consensus 492 ~~~~~~~~~~~~~~~-----~~~w~fl~----~~~~-~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (617)
...|++++.-+.... +-.|+|+. .+.| |.+.||+|||++-+.+. +.. ..|
T Consensus 7 ~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~k-----l~~---------~~Y------ 66 (116)
T 3iu5_A 7 IAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQK-----LKM---------EEY------ 66 (116)
T ss_dssp HHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHH-----HHT---------TCC------
T ss_pred HHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHH-----HHc---------CCC------
Confidence 456677777776653 45899984 3444 99999999999966654 110 011
Q ss_pred cccccccccccchhhhhhhHHHhhhcccchhccCCCCchhhhHhh
Q 007127 562 RVMQRCDGEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKIKN 606 (617)
Q Consensus 562 ~~~~~~~~~~~~~~~~l~~~c~~~~~~l~~~cy~~~~~~~~~~~~ 606 (617)
+..++-...+-++---|.+| +||.|.....++.
T Consensus 67 ----~s~~~f~~D~~li~~Na~~y--------N~~~s~~~~~A~~ 99 (116)
T 3iu5_A 67 ----DDVNLLTADFQLLFNNAKSY--------YKPDSPEYKAACK 99 (116)
T ss_dssp ----CSHHHHHHHHHHHHHHHHHH--------SCTTSHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHHHH--------CCCCCHHHHHHHH
Confidence 14455566677777778877 5777765544443
No 32
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=40.04 E-value=18 Score=32.51 Aligned_cols=86 Identities=14% Similarity=0.143 Sum_probs=52.5
Q ss_pred cchhHHHHHHHHhhhhhcccc-----cchhhhc----ccch-hhhhccCCCccccccccCCccccCcCCcccccccccch
Q 007127 487 RNADFQIICNEFLACITNMTR-----KVWGFLT----HGCG-YLQMLKDPIDFSWLRQSSNLCHTPCCSDEESNKETGYQ 556 (617)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~-----~~w~fl~----~~~~-~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 556 (617)
+-......+++++..|.+..- -.|+|+. .+.| |.+.||+|||++-+.+... . ..|
T Consensus 14 ~~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~-----~---------~~Y- 78 (130)
T 3k2j_A 14 GTENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLK-----N---------QEY- 78 (130)
T ss_dssp HHHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHH-----T---------TCC-
T ss_pred chHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHh-----c---------CCC-
Confidence 344455556666666665532 3899985 4444 8999999999996665411 0 011
Q ss_pred hhhhhcccccccccccchhhhhhhHHHhhhcccchhccCCCCchhhhH
Q 007127 557 ESICRRVMQRCDGEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKI 604 (617)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~~~l~~~cy~~~~~~~~~~ 604 (617)
+..++-...+-++--.|.+| +||.|-....+
T Consensus 79 ---------~s~~ef~~Dv~Lif~Na~~y--------N~~~s~i~~~A 109 (130)
T 3k2j_A 79 ---------ETLDHLECDLNLMFENAKRY--------NVPNSAIYKRV 109 (130)
T ss_dssp ---------SSHHHHHHHHHHHHHHHHHH--------SCTTSHHHHHH
T ss_pred ---------CCHHHHHHHHHHHHHHHHHH--------CCCCCHHHHHH
Confidence 13445556666777778877 56776554433
No 33
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=39.04 E-value=20 Score=32.13 Aligned_cols=48 Identities=10% Similarity=0.325 Sum_probs=36.8
Q ss_pred chhHHHHHHHHhhhhhccc------ccchhhhcc----cc-hhhhhccCCCcccccccc
Q 007127 488 NADFQIICNEFLACITNMT------RKVWGFLTH----GC-GYLQMLKDPIDFSWLRQS 535 (617)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~------~~~w~fl~~----~~-~~~~~~~~p~~~~~l~~~ 535 (617)
-..+...|+++++.+.... +..|+|+.- +. .|.+.||+||||+=+.+.
T Consensus 9 ~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~k 67 (129)
T 2grc_A 9 PPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKER 67 (129)
T ss_dssp CHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHH
Confidence 4567888999999998764 468999862 33 489999999999955554
No 34
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.31 E-value=32 Score=30.43 Aligned_cols=89 Identities=12% Similarity=0.194 Sum_probs=58.9
Q ss_pred cccchhHHHHHHHHhhhhhccc-----ccchhhhc----ccc-hhhhhccCCCccccccccCCccccCcCCccccccccc
Q 007127 485 QSRNADFQIICNEFLACITNMT-----RKVWGFLT----HGC-GYLQMLKDPIDFSWLRQSSNLCHTPCCSDEESNKETG 554 (617)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~-----~~~w~fl~----~~~-~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 554 (617)
+-....+...|+++++-+.... +..|+|+. .+. .|.+.||+||||+=+.+..... .
T Consensus 8 ~~~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~--------------~ 73 (123)
T 2dat_A 8 SPNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNH--------------K 73 (123)
T ss_dssp SCCCHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTT--------------C
T ss_pred CCCCHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCC--------------C
Confidence 3446778888999998887764 46899985 233 4899999999999666652111 1
Q ss_pred chhhhhhcccccccccccchhhhhhhHHHhhhcccchhccCCCCchhhhHh
Q 007127 555 YQESICRRVMQRCDGEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKIK 605 (617)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~~~l~~~cy~~~~~~~~~~~ 605 (617)
|. ..++-...+-++---|.+| +||.|.....++
T Consensus 74 Y~----------s~~~f~~D~~li~~Na~~y--------N~~~s~i~~~A~ 106 (123)
T 2dat_A 74 YR----------SLGDLEKDVMLLCHNAQTF--------NLEGSQIYEDSI 106 (123)
T ss_dssp CC----------SHHHHHHHHHHHHHHHHHH--------SCTTSHHHHHHH
T ss_pred CC----------CHHHHHHHHHHHHHHHHHH--------CCCCCHHHHHHH
Confidence 11 3445556667777778877 566665544433
No 35
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=34.90 E-value=23 Score=31.25 Aligned_cols=47 Identities=19% Similarity=0.437 Sum_probs=35.6
Q ss_pred chhHHHHHHHHhhhhhcccccchhhhcc----cc-hhhhhccCCCcccccccc
Q 007127 488 NADFQIICNEFLACITNMTRKVWGFLTH----GC-GYLQMLKDPIDFSWLRQS 535 (617)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~w~fl~~----~~-~~~~~~~~p~~~~~l~~~ 535 (617)
...|+..|++++.-+.... ..|+|+.- +. .|.+.||+|||++=+.+.
T Consensus 8 ~~~~~~~c~~il~~l~~~~-~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~k 59 (123)
T 3q2e_A 8 ESNWKKQCKELVNLIFQCE-DSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRET 59 (123)
T ss_dssp --CHHHHHHHHHHHHHTSG-GGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC-CcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHH
Confidence 5678899999998887654 58999862 33 499999999999966554
No 36
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=33.79 E-value=28 Score=30.46 Aligned_cols=89 Identities=12% Similarity=0.096 Sum_probs=56.5
Q ss_pred ccchhHHHHHHHHhhhhhcccccchhhhcc-------cchhhhhccCCCccccccccCCccccCcCCcccccccccchhh
Q 007127 486 SRNADFQIICNEFLACITNMTRKVWGFLTH-------GCGYLQMLKDPIDFSWLRQSSNLCHTPCCSDEESNKETGYQES 558 (617)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~w~fl~~-------~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (617)
....+++..+.+.+.-+..-.+..|+|+.- =-.|.+.||+|||++-+.+.... ..|.
T Consensus 7 ~~~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~--------------~~Y~-- 70 (119)
T 3p1f_A 7 FKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDT--------------GQYQ-- 70 (119)
T ss_dssp CCHHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHT--------------TCCS--
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhc--------------CCCC--
Confidence 345667777777777666556788999852 23589999999999966554110 0111
Q ss_pred hhhcccccccccccchhhhhhhHHHhhhcccchhccCCCCchhhhHhh
Q 007127 559 ICRRVMQRCDGEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKIKN 606 (617)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~l~~~c~~~~~~l~~~cy~~~~~~~~~~~~ 606 (617)
..++-...|-++--.|.+| +||.|-....++.
T Consensus 71 --------~~~~f~~D~~li~~Na~~y--------N~~~s~i~~~A~~ 102 (119)
T 3p1f_A 71 --------EPWQYVDDVWLMFNNAWLY--------NRKTSRVYKFCSK 102 (119)
T ss_dssp --------SHHHHHHHHHHHHHHHHHH--------SCTTSHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHHHHHH--------CCCCCHHHHHHHH
Confidence 3445556666777778877 5676655544443
No 37
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=33.31 E-value=24 Score=32.60 Aligned_cols=87 Identities=15% Similarity=0.259 Sum_probs=57.1
Q ss_pred cccchhHHHHHHHHhhhhhcccccchhhhcc------cc-hhhhhccCCCccccccccCCccccCcCCcccccccccchh
Q 007127 485 QSRNADFQIICNEFLACITNMTRKVWGFLTH------GC-GYLQMLKDPIDFSWLRQSSNLCHTPCCSDEESNKETGYQE 557 (617)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~w~fl~~------~~-~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (617)
.-...+++.+++.++.-+..- +..|+|+.- +. .|.+.||+||||+-+.+..... .|.
T Consensus 27 ~r~t~~l~~~~~~il~~l~~~-~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~--------------~Y~- 90 (154)
T 4alg_A 27 GRVTNQLQYLHKVVMKALWKH-QFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENN--------------YYW- 90 (154)
T ss_dssp CCCBHHHHHHHHTHHHHHHTS-TTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTT--------------CCS-
T ss_pred CcchHHHHHHHHHHHHHHHhC-cCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcC--------------CCC-
Confidence 345678888888888877664 678999851 33 4999999999999665541110 111
Q ss_pred hhhhcccccccccccchhhhhhhHHHhhhcccchhccCCCCchhhhH
Q 007127 558 SICRRVMQRCDGEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKI 604 (617)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~l~~~c~~~~~~l~~~cy~~~~~~~~~~ 604 (617)
..++-...|-++---|.+| ++|.|-....+
T Consensus 91 ---------s~~ef~~Dv~Lif~Na~~Y--------N~~~s~i~~~A 120 (154)
T 4alg_A 91 ---------AASECMQDFNTMFTNCYIY--------NKPTDDIVLMA 120 (154)
T ss_dssp ---------SHHHHHHHHHHHHHHHHHH--------SCTTSHHHHHH
T ss_pred ---------CHHHHHHHHHHHHHHHHHH--------CCCCCHHHHHH
Confidence 3445555666677778887 56666544433
No 38
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=33.26 E-value=25 Score=31.06 Aligned_cols=85 Identities=20% Similarity=0.167 Sum_probs=53.3
Q ss_pred hhHHHHHHHHhhhhhccc-----ccchhhhc----ccch-hhhhccCCCccccccccCCccccCcCCcccccccccchhh
Q 007127 489 ADFQIICNEFLACITNMT-----RKVWGFLT----HGCG-YLQMLKDPIDFSWLRQSSNLCHTPCCSDEESNKETGYQES 558 (617)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~-----~~~w~fl~----~~~~-~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (617)
..++..+++++..+.... +-.|+|+. .+.| |.+.||+|||++=+.+... . ..|
T Consensus 14 ~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~-----~---------~~Y--- 76 (124)
T 3mb4_A 14 TPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMM-----A---------NKY--- 76 (124)
T ss_dssp CHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHH-----T---------TCC---
T ss_pred hHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHH-----c---------CCC---
Confidence 356777888888877653 34699985 3443 9999999999995554411 0 011
Q ss_pred hhhcccccccccccchhhhhhhHHHhhhcccchhccCCCCchhhhHh
Q 007127 559 ICRRVMQRCDGEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKIK 605 (617)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~l~~~c~~~~~~l~~~cy~~~~~~~~~~~ 605 (617)
+..++-...+-++--.|.+| +||.|-....++
T Consensus 77 -------~~~~~f~~D~~li~~Na~~y--------N~~~s~i~~~A~ 108 (124)
T 3mb4_A 77 -------QDIDSMVEDFVMMFNNACTY--------NEPESLIYKDAL 108 (124)
T ss_dssp -------CSHHHHHHHHHHHHHHHHHH--------SCTTSHHHHHHH
T ss_pred -------CCHHHHHHHHHHHHHHHHHH--------CCCCCHHHHHHH
Confidence 13445556666777778877 356665544333
No 39
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*
Probab=32.37 E-value=14 Score=32.27 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=18.7
Q ss_pred CceEEecCCCCCCccccCCCceEEee
Q 007127 1 MEMRASEEIRQGEDITPPLFPLTFAF 26 (617)
Q Consensus 1 ~GL~AtrdI~~Ge~Il~~e~Pla~vL 26 (617)
.||+|+++|++|+.|.. .|-..+.
T Consensus 16 ~GvfA~~~I~~G~~I~e--y~g~vi~ 39 (119)
T 1n3j_A 16 YGVFARKSFEKGELVEE--CLCIVRH 39 (119)
T ss_dssp CEEEECCCBCSCEEECC--CCCEEEC
T ss_pred eEEEECCcCCCCCEEEE--eeEEEEC
Confidence 48999999999999984 5554433
No 40
>1wwp_A Hypothetical protein TTHA0636; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 2.11A {Thermus thermophilus HB8}
Probab=31.72 E-value=1.6e+02 Score=25.57 Aligned_cols=58 Identities=14% Similarity=-0.055 Sum_probs=44.9
Q ss_pred HHhhcCChhHHHHHHHHHHHhhhhhcch--hhhHHHHHHhhhcCcchhhHHHHHHHHHHHH
Q 007127 317 EYLLVGDPESCCQKLENILTQGLQGELL--ESEKVKIQLNLRLHPLHHLSLNAYTTLASAY 375 (617)
Q Consensus 317 ey~~~Gdpk~a~~yaelave~gl~e~g~--~~edv~~m~~l~lhP~hH~S~~~~~tLa~aY 375 (617)
++...+ |..-.+..+.|.+.|++..+. .+-+....|++..|-+.............-|
T Consensus 47 ~~~g~~-~~s~rd~~r~a~~~glI~~~~~~~w~~m~~~RN~~vH~Y~~~~~~~v~~~i~~~ 106 (119)
T 1wwp_A 47 EKEGLE-GASPKGVIRLAREVGLLRDEEARLALGMVDDRSLTVHTYNEPLARAIFRRLPDY 106 (119)
T ss_dssp HHHCCC-CCSHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHH
T ss_pred HhhCCC-CCCHHHHHHHHHHcCCCCchHHHHHHHHHHHhhHhcccccHhhHHHHHHHHHHH
Confidence 555666 888889999999999998885 5667888888999988887766655554444
No 41
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=31.24 E-value=30 Score=32.24 Aligned_cols=86 Identities=16% Similarity=0.329 Sum_probs=50.9
Q ss_pred hHHHHHHHHhhhhhcccccchhhhc----ccc-hhhhhccCCCccccccccCCccccCcCCcccccccccchhhhhhccc
Q 007127 490 DFQIICNEFLACITNMTRKVWGFLT----HGC-GYLQMLKDPIDFSWLRQSSNLCHTPCCSDEESNKETGYQESICRRVM 564 (617)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~w~fl~----~~~-~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (617)
.|..+.++++.--..-.+..|+|+. ... .|.+.||+||||+-+.+..... .|.
T Consensus 29 ~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~--------------~Y~-------- 86 (158)
T 3uv4_A 29 AFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKH--------------KYQ-------- 86 (158)
T ss_dssp HHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTT--------------CCS--------
T ss_pred HHHHHHHHHHHHHHHcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcC--------------CCC--------
Confidence 4455544444332222466899984 333 4999999999999776651110 111
Q ss_pred ccccccccchhhhhhhHHHhhhcccchhccCCCCchhhhHhhh
Q 007127 565 QRCDGEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKIKNV 607 (617)
Q Consensus 565 ~~~~~~~~~~~~~l~~~c~~~~~~l~~~cy~~~~~~~~~~~~~ 607 (617)
..++-..-|-++--.|.+| +||.|.....++.+
T Consensus 87 --s~~ef~~Dv~Lif~Na~~y--------N~~~s~i~~~A~~L 119 (158)
T 3uv4_A 87 --SRESFLDDVNLILANSVKY--------NGPESQYTKTAQEI 119 (158)
T ss_dssp --SHHHHHHHHHHHHHHHHHH--------HCTTCHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHHH--------CCCCCHHHHHHHHH
Confidence 3455566677777788887 35666555444433
No 42
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=30.16 E-value=32 Score=30.43 Aligned_cols=85 Identities=16% Similarity=0.185 Sum_probs=52.1
Q ss_pred hhHHHHHHHHhhhhhccc-----ccchhhhc----ccc-hhhhhccCCCccccccccCCccccCcCCcccccccccchhh
Q 007127 489 ADFQIICNEFLACITNMT-----RKVWGFLT----HGC-GYLQMLKDPIDFSWLRQSSNLCHTPCCSDEESNKETGYQES 558 (617)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~-----~~~w~fl~----~~~-~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (617)
..++..+++.++-+.... +-.|+|+. .+. .|.+.||+|||++=+.+.... ..|
T Consensus 8 ~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~--------------~~Y--- 70 (126)
T 3mqm_A 8 ARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILT--------------GYY--- 70 (126)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHH--------------TCC---
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHc--------------CCC---
Confidence 455666666666665543 34899984 343 499999999999955544110 011
Q ss_pred hhhcccccccccccchhhhhhhHHHhhhcccchhccCCCCchhhhHh
Q 007127 559 ICRRVMQRCDGEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKIK 605 (617)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~l~~~c~~~~~~l~~~cy~~~~~~~~~~~ 605 (617)
+..++-...+-++--.|.+| +||.|-....++
T Consensus 71 -------~s~~~f~~D~~li~~Na~~y--------N~~~s~~~~~A~ 102 (126)
T 3mqm_A 71 -------KTVEAFDADMLKVFRNAEKY--------YGRKSPVGRDVC 102 (126)
T ss_dssp -------CSHHHHHHHHHHHHHHHHHH--------HCTTSHHHHHHH
T ss_pred -------CCHHHHHHHHHHHHHHHHHH--------CCCCCHHHHHHH
Confidence 14455566677777778877 456665544443
No 43
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=29.27 E-value=36 Score=31.84 Aligned_cols=47 Identities=19% Similarity=0.528 Sum_probs=36.9
Q ss_pred chhHHHHHHHHhhhhhcccccchhhhcc------cc-hhhhhccCCCcccccccc
Q 007127 488 NADFQIICNEFLACITNMTRKVWGFLTH------GC-GYLQMLKDPIDFSWLRQS 535 (617)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~w~fl~~------~~-~~~~~~~~p~~~~~l~~~ 535 (617)
..+|+..|++++.-+... ...|+|+.- +. .|.+.||+||||+-+.+.
T Consensus 19 ~~~~~~~~~~il~~L~~~-~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~k 72 (166)
T 3fkm_X 19 NKQWYLLANQLILSLSKY-EGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTK 72 (166)
T ss_dssp THHHHHHHHHHHHHHTTS-TTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhC-CCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHH
Confidence 578899999999988764 568999764 23 489999999999966554
No 44
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=26.73 E-value=42 Score=29.04 Aligned_cols=87 Identities=16% Similarity=0.256 Sum_probs=55.9
Q ss_pred chhHHHHHHHHhhhhhcccccchhhhcc----c-chhhhhccCCCccccccccCCccccCcCCcccccccccchhhhhhc
Q 007127 488 NADFQIICNEFLACITNMTRKVWGFLTH----G-CGYLQMLKDPIDFSWLRQSSNLCHTPCCSDEESNKETGYQESICRR 562 (617)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~w~fl~~----~-~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (617)
...++..|++++.-+.+. ...|+|+.- + -.|.+.||+||||+=+.+..... .|.
T Consensus 5 ~~~l~~~~~~il~~l~~~-~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~--------------~Y~------ 63 (112)
T 3d7c_A 5 PDQLYTTLKNLLAQIKSH-PSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSR--------------YYV------ 63 (112)
T ss_dssp HHHHHHHHHHHHHHHHHS-GGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTT--------------CCC------
T ss_pred HHHHHHHHHHHHHHHHcC-CCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCC--------------CCc------
Confidence 467788888888877664 467999863 3 35899999999999665541100 111
Q ss_pred ccccccccccchhhhhhhHHHhhhcccchhccCCCCchhhhHhhh
Q 007127 563 VMQRCDGEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKIKNV 607 (617)
Q Consensus 563 ~~~~~~~~~~~~~~~l~~~c~~~~~~l~~~cy~~~~~~~~~~~~~ 607 (617)
..++-...|-++---|.+|- ||.|.....++.+
T Consensus 64 ----s~~~f~~Dv~li~~Na~~yN--------~~~s~~~~~A~~L 96 (112)
T 3d7c_A 64 ----TRKLFVADLQRVIANCREYN--------PPDSEYCRCASAL 96 (112)
T ss_dssp ----SHHHHHHHHHHHHHHHHHHS--------CTTSHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHHHHHC--------CCCCHHHHHHHHH
Confidence 34555566667777788774 5666555444433
No 45
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=26.19 E-value=33 Score=30.71 Aligned_cols=86 Identities=16% Similarity=0.267 Sum_probs=54.8
Q ss_pred chhHHHHHHHHhhhhhcccccchhhhc----ccc-hhhhhccCCCccccccccCCccccCcCCcccccccccchhhhhhc
Q 007127 488 NADFQIICNEFLACITNMTRKVWGFLT----HGC-GYLQMLKDPIDFSWLRQSSNLCHTPCCSDEESNKETGYQESICRR 562 (617)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~w~fl~----~~~-~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (617)
-..++..|++.+.-+.. ....|+|+. .+. .|.+.||+||||+=+.+.... ..|
T Consensus 11 ~~~l~~~l~~il~~l~~-~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~--------------~~Y------- 68 (135)
T 3rcw_A 11 LTPLTVLLRSVLDQLQD-KDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEA--------------QGY------- 68 (135)
T ss_dssp CCHHHHHHHHHHHHHHH-TCTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHT--------------TCC-------
T ss_pred chHHHHHHHHHHHHHHh-CCcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhc--------------CCC-------
Confidence 44577888888777755 345788875 333 499999999999955554110 011
Q ss_pred ccccccccccchhhhhhhHHHhhhcccchhccCCCCchhhhHhh
Q 007127 563 VMQRCDGEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKIKN 606 (617)
Q Consensus 563 ~~~~~~~~~~~~~~~l~~~c~~~~~~l~~~cy~~~~~~~~~~~~ 606 (617)
+..++-...+-++--.|.+| +||.|.....++.
T Consensus 69 ---~~~~~f~~D~~li~~Na~~y--------N~~~s~~~~~A~~ 101 (135)
T 3rcw_A 69 ---KNLHEFEEDFDLIIDNCMKY--------NARDTVFYRAAVR 101 (135)
T ss_dssp ---SSHHHHHHHHHHHHHHHHHH--------SCTTSHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHHHH--------CCCCCHHHHHHHH
Confidence 14455566677777788887 3676655544443
No 46
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.46 E-value=43 Score=30.17 Aligned_cols=47 Identities=15% Similarity=0.299 Sum_probs=34.7
Q ss_pred chhHHHHHHHHhhhhhcccccchhhhcccchhhhhccCCCcccccccc
Q 007127 488 NADFQIICNEFLACITNMTRKVWGFLTHGCGYLQMLKDPIDFSWLRQS 535 (617)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~w~fl~~~~~~~~~~~~p~~~~~l~~~ 535 (617)
..+++..|+.++.-+..- ...|+|+.---.|.+.||+||||+-+.+.
T Consensus 10 ~~~L~~~~~~il~~l~~~-~~~~~F~~P~pdY~~iIk~PmDL~tI~~k 56 (131)
T 2dkw_A 10 LRELRLFLRDVTKRLATD-KRFNIFSKPVSDYLEVIKEPMDLSTVITK 56 (131)
T ss_dssp HHHHHHHHHHHHHHHHHS-GGGCTTSSCCSSCTTSCSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-ccchhhcCcCccHHhHcCCCcCHHHHHHH
Confidence 456777777777766553 45799987544589999999999966665
No 47
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=23.41 E-value=93 Score=29.04 Aligned_cols=114 Identities=13% Similarity=0.160 Sum_probs=66.2
Q ss_pred CcccccccccccccccccCc-----cccc---------ccchhHHHHHHHHhhhhhcccccchhhhc----ccchhhhhc
Q 007127 462 SPEIHECSKCSLVDRLQVNP-----FLSQ---------SRNADFQIICNEFLACITNMTRKVWGFLT----HGCGYLQML 523 (617)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~-----~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~w~fl~----~~~~~~~~~ 523 (617)
+.....|..|.-....+... -+++ --...-+..|++++.-+..- ...|+|+. .--.|.+.|
T Consensus 39 p~~~W~C~~C~~~~~~~~e~dc~~~~~~s~~~~~~~~~~l~~~~~~~c~~il~~l~~~-~~s~~F~~Pv~~~~pdY~~iI 117 (184)
T 3o36_A 39 PSGEWICTFCRDLSKPEVEYDCDAPSHNSEKKKTEGLVKLTPIDKRKCERLLLFLYCH-EMSLAFQDPVPLTVPDYYKII 117 (184)
T ss_dssp CSSCCCCTTTSCSSSCSSCCGGGCCSSCTTTSCCTTCCCCCHHHHHHHHHHHHHHHHS-TTCHHHHSCCCTTSTTHHHHC
T ss_pred CCCCEECccccCccccccccccccccccccccccccccccCHHHHHHHHHHHHHHHhc-hhhhhhccccccCCCchhhhc
Confidence 45668899998765433211 1100 11234566777777776554 46788873 233588999
Q ss_pred cCCCccccccccCCccccCcCCcccccccccchhhhhhcccccccccccchhhhhhhHHHhhhcccchhccCCCCchhhh
Q 007127 524 KDPIDFSWLRQSSNLCHTPCCSDEESNKETGYQESICRRVMQRCDGEERITIFQLGVHCIAYGGYLANICYGPNSHWPCK 603 (617)
Q Consensus 524 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~~~l~~~cy~~~~~~~~~ 603 (617)
|+||||+-+.+. +.. +...|. ..++-...|-++--.|.+| +||.|-....
T Consensus 118 k~PmdL~tI~~k-----l~~-------~~~~Y~----------s~~ef~~Dv~li~~Na~~y--------N~~~s~v~~~ 167 (184)
T 3o36_A 118 KNPMDLSTIKKR-----LQE-------DYSMYS----------KPEDFVADFRLIFQNCAEF--------NEPDSEVANA 167 (184)
T ss_dssp SSCCCHHHHHHH-----HHS-------TTCSCC----------SHHHHHHHHHHHHHHHHHH--------SCTTCHHHHH
T ss_pred CCCCCHHHHHHH-----HHh-------cCCCCC----------CHHHHHHHHHHHHHHHHHH--------CCCCCHHHHH
Confidence 999999977665 111 000111 3445556666666778877 5666655544
Q ss_pred Hhh
Q 007127 604 IKN 606 (617)
Q Consensus 604 ~~~ 606 (617)
++.
T Consensus 168 a~~ 170 (184)
T 3o36_A 168 GIK 170 (184)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 48
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*
Probab=22.72 E-value=27 Score=31.87 Aligned_cols=17 Identities=12% Similarity=0.261 Sum_probs=14.6
Q ss_pred CceEEecCCCCCCcccc
Q 007127 1 MEMRASEEIRQGEDITP 17 (617)
Q Consensus 1 ~GL~AtrdI~~Ge~Il~ 17 (617)
.||+|+++|++|+.|..
T Consensus 42 ~Gl~A~~~I~~G~~I~e 58 (166)
T 3f9x_A 42 RGVIATKQFSRGDFVVE 58 (166)
T ss_dssp EEEEESSCBCTTCEEEE
T ss_pred eEEEECCCcCCCCEEEE
Confidence 38999999999999875
No 49
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=22.61 E-value=49 Score=29.42 Aligned_cols=87 Identities=15% Similarity=0.239 Sum_probs=55.3
Q ss_pred chhHHHHHHHHhhhhhcccccchhhhcc------c-chhhhhccCCCccccccccCCccccCcCCcccccccccchhhhh
Q 007127 488 NADFQIICNEFLACITNMTRKVWGFLTH------G-CGYLQMLKDPIDFSWLRQSSNLCHTPCCSDEESNKETGYQESIC 560 (617)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~w~fl~~------~-~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (617)
..+++..++.++.-+..- ...|+|+.- + -.|.+.||+||||+-+.+..... .|.
T Consensus 19 ~~~l~~~~~~il~~L~~~-~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~--------------~Y~---- 79 (127)
T 2oss_A 19 TNQLQYLLRVVLKTLWKH-QFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENN--------------YYW---- 79 (127)
T ss_dssp CHHHHHHHHTHHHHHHTS-TTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTT--------------CCS----
T ss_pred HHHHHHHHHHHHHHHHhC-ccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcC--------------CCC----
Confidence 567778888777776553 568999742 3 35899999999999666541110 111
Q ss_pred hcccccccccccchhhhhhhHHHhhhcccchhccCCCCchhhhHhhh
Q 007127 561 RRVMQRCDGEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKIKNV 607 (617)
Q Consensus 561 ~~~~~~~~~~~~~~~~~l~~~c~~~~~~l~~~cy~~~~~~~~~~~~~ 607 (617)
..++-...+-++---|.+| +||.|.....++.|
T Consensus 80 ------s~~ef~~D~~li~~Na~~y--------N~~~s~i~~~A~~L 112 (127)
T 2oss_A 80 ------NAQECIQDFNTMFTNCYIY--------NKPGDDIVLMAEAL 112 (127)
T ss_dssp ------SHHHHHHHHHHHHHHHHHH--------SCTTCHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHHHHHHH--------CCCCCHHHHHHHHH
Confidence 3455556666666778887 45666555444433
No 50
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.76 E-value=45 Score=29.42 Aligned_cols=86 Identities=16% Similarity=0.213 Sum_probs=53.6
Q ss_pred hhHHHHHHHHhhhhhcccccchhhhc----cc-chhhhhccCCCccccccccCCccccCcCCcccccccccchhhhhhcc
Q 007127 489 ADFQIICNEFLACITNMTRKVWGFLT----HG-CGYLQMLKDPIDFSWLRQSSNLCHTPCCSDEESNKETGYQESICRRV 563 (617)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~w~fl~----~~-~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (617)
..|+..+++++.-+... ...|+|+. .+ -.|.+.||+||||+=+.+..... .|.
T Consensus 6 ~pl~~~l~~il~~l~~~-~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~--------------~Y~------- 63 (121)
T 2d9e_A 6 SGFLILLRKTLEQLQEK-DTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAY--------------RYL------- 63 (121)
T ss_dssp CHHHHHHHHHHHHHHHH-CSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTT--------------CCC-------
T ss_pred cHHHHHHHHHHHHHHcC-CccHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcC--------------CCC-------
Confidence 45667777777777654 45788875 23 34899999999999555541110 111
Q ss_pred cccccccccchhhhhhhHHHhhhcccchhccCCCCchhhhHhhh
Q 007127 564 MQRCDGEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKIKNV 607 (617)
Q Consensus 564 ~~~~~~~~~~~~~~l~~~c~~~~~~l~~~cy~~~~~~~~~~~~~ 607 (617)
..++-...+-++---|.+| +||.|.....++.+
T Consensus 64 ---s~~ef~~D~~li~~Na~~y--------N~~~s~~~~~A~~L 96 (121)
T 2d9e_A 64 ---NFDDFEEDFNLIVSNCLKY--------NAKDTIFYRAAVRL 96 (121)
T ss_dssp ---SHHHHHHHHHHHHHHHHHH--------SCTTSHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHHHH--------CCCCCHHHHHHHHH
Confidence 4455566666777778877 45666555444433
No 51
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=21.69 E-value=55 Score=28.67 Aligned_cols=87 Identities=21% Similarity=0.203 Sum_probs=56.7
Q ss_pred chhHHHHHHHHhhhhhccccc-----chhhhc----ccc-hhhhhccCCCccccccccCCccccCcCCcccccccccchh
Q 007127 488 NADFQIICNEFLACITNMTRK-----VWGFLT----HGC-GYLQMLKDPIDFSWLRQSSNLCHTPCCSDEESNKETGYQE 557 (617)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~-----~w~fl~----~~~-~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (617)
-..++.++++++.-+....-. .|+|+. .+. .|.+.||+|||++-+.+... . ..|
T Consensus 6 p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~-----~---------~~Y-- 69 (120)
T 3ljw_A 6 PAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQ-----N---------GSY-- 69 (120)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHH-----H---------TCC--
T ss_pred HHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHc-----c---------CCC--
Confidence 456777888888877665332 788874 333 48999999999997766511 0 011
Q ss_pred hhhhcccccccccccchhhhhhhHHHhhhcccchhccCCCCchhhhHhh
Q 007127 558 SICRRVMQRCDGEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKIKN 606 (617)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~l~~~c~~~~~~l~~~cy~~~~~~~~~~~~ 606 (617)
+..++-...+-++--.|.+| +||.|-....++.
T Consensus 70 --------~s~~~f~~D~~li~~Na~~y--------N~~~s~~~~~A~~ 102 (120)
T 3ljw_A 70 --------KSIHAMAKDIDLLAKNAKTY--------NEPGSQVFKDANS 102 (120)
T ss_dssp --------CSHHHHHHHHHHHHHHHHHH--------SCTTSHHHHHHHH
T ss_pred --------CCHHHHHHHHHHHHHHHHHH--------CCCCCHHHHHHHH
Confidence 14455666677777788887 5677755544443
No 52
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=20.64 E-value=50 Score=29.07 Aligned_cols=84 Identities=19% Similarity=0.264 Sum_probs=52.0
Q ss_pred hHHHHHHHHhhhhhcccccchhhhcc-----cchhhhhccCCCccccccccCCccccCcCCcccccccccchhhhhhccc
Q 007127 490 DFQIICNEFLACITNMTRKVWGFLTH-----GCGYLQMLKDPIDFSWLRQSSNLCHTPCCSDEESNKETGYQESICRRVM 564 (617)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~w~fl~~-----~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (617)
.....|.+++.-+.+- ...|+|+.- =-.|.+.||+||||+=+.+.... ..|.
T Consensus 13 ~~~~~~~~il~~l~~~-~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~--------------~~Y~-------- 69 (121)
T 1e6i_A 13 PHDAAIQNILTELQNH-AAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLES--------------NKYQ-------- 69 (121)
T ss_dssp TTHHHHHHHHHHHHHS-TTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHT--------------TCCS--------
T ss_pred HHHHHHHHHHHHHHcC-CCchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhc--------------CCCC--------
Confidence 3445677777776653 568999763 23589999999999966554111 0111
Q ss_pred ccccccccchhhhhhhHHHhhhcccchhccCCCCchhhhHhh
Q 007127 565 QRCDGEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKIKN 606 (617)
Q Consensus 565 ~~~~~~~~~~~~~l~~~c~~~~~~l~~~cy~~~~~~~~~~~~ 606 (617)
..++-...+-++---|.+| +||.|.....++.
T Consensus 70 --s~~~f~~D~~li~~Na~~y--------N~~~s~i~~~A~~ 101 (121)
T 1e6i_A 70 --KMEDFIYDARLVFNNCRMY--------NGENTSYYKYANR 101 (121)
T ss_dssp --SHHHHHHHHHHHHHHHHHH--------SCTTSHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHHH--------CCCCCHHHHHHHH
Confidence 3455556666666778777 4666655544443
Done!